1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 127843d17aSBarry Smith { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 144e879edeSHong Zhang PetscInt i,*idxb = NULL,m = A->rmap->n,bs = A->cmap->bs; 154e879edeSHong Zhang PetscScalar *va,*vv; 164e879edeSHong Zhang Vec vB,vA; 174e879edeSHong Zhang const PetscScalar *vb; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 209566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vA)); 219566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A,vA,idx)); 224e879edeSHong Zhang 239566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA,&va)); 24985db425SBarry Smith if (idx) { 254e879edeSHong Zhang for (i=0; i<m; i++) { 2626fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2726fbe8dcSKarl Rupp } 28985db425SBarry Smith } 297843d17aSBarry Smith 309566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vB)); 319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&idxb)); 329566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B,vB,idxb)); 337843d17aSBarry Smith 349566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v,&vv)); 359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB,&vb)); 364e879edeSHong Zhang for (i=0; i<m; i++) { 3726fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 384e879edeSHong Zhang vv[i] = vb[i]; 394e879edeSHong Zhang if (idx) idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs); 404e879edeSHong Zhang } else { 414e879edeSHong Zhang vv[i] = va[i]; 4243359b5eSHong Zhang if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs*a->garray[idxb[i]/bs] + (idxb[i] % bs)) 434e879edeSHong Zhang idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs); 4426fbe8dcSKarl Rupp } 457843d17aSBarry Smith } 469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA,&vv)); 479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA,&va)); 489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB,&vb)); 499566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 527843d17aSBarry Smith PetscFunctionReturn(0); 537843d17aSBarry Smith } 547843d17aSBarry Smith 557087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 567fc3c18eSBarry Smith { 577fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 587fc3c18eSBarry Smith 597fc3c18eSBarry Smith PetscFunctionBegin; 609566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 619566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 627fc3c18eSBarry Smith PetscFunctionReturn(0); 637fc3c18eSBarry Smith } 647fc3c18eSBarry Smith 657087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 667fc3c18eSBarry Smith { 677fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 687fc3c18eSBarry Smith 697fc3c18eSBarry Smith PetscFunctionBegin; 709566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 719566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 727fc3c18eSBarry Smith PetscFunctionReturn(0); 737fc3c18eSBarry Smith } 747fc3c18eSBarry Smith 75537820f0SBarry Smith /* 76537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 78e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7957b952d6SSatish Balay length of colmap equals the global matrix length. 8057b952d6SSatish Balay */ 81ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8257b952d6SSatish Balay { 8357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 8457b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 85d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8657b952d6SSatish Balay 87d64ed03dSBarry Smith PetscFunctionBegin; 88aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 899566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap)); 9048e59246SSatish Balay for (i=0; i<nbs; i++) { 919566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES)); 9248e59246SSatish Balay } 9348e59246SSatish Balay #else 949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs+1,&baij->colmap)); 959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt))); 96928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9748e59246SSatish Balay #endif 983a40ed3dSBarry Smith PetscFunctionReturn(0); 9957b952d6SSatish Balay } 10057b952d6SSatish Balay 101d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 10280c1aa95SSatish Balay { \ 10380c1aa95SSatish Balay brow = row/bs; \ 10480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 105ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10680c1aa95SSatish Balay bcol = col/bs; \ 10780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 108ab26458aSBarry Smith low = 0; high = nrow; \ 109ab26458aSBarry Smith while (high-low > 3) { \ 110ab26458aSBarry Smith t = (low+high)/2; \ 111ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 112ab26458aSBarry Smith else low = t; \ 113ab26458aSBarry Smith } \ 114ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 118eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 119eada6651SSatish Balay else *bap = value; \ 120ac7a638eSSatish Balay goto a_noinsert; \ 12180c1aa95SSatish Balay } \ 12280c1aa95SSatish Balay } \ 12389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1245f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 125fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12680c1aa95SSatish Balay N = nrow++ - 1; \ 12780c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1289566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\ 1299566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \ 1309566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 13180c1aa95SSatish Balay rp[_i] = bcol; \ 13280c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 133ac7a638eSSatish Balay a_noinsert:; \ 13480c1aa95SSatish Balay ailen[brow] = nrow; \ 13580c1aa95SSatish Balay } 13657b952d6SSatish Balay 137d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 138ac7a638eSSatish Balay { \ 139ac7a638eSSatish Balay brow = row/bs; \ 140ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 141ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 142ac7a638eSSatish Balay bcol = col/bs; \ 143ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 144ac7a638eSSatish Balay low = 0; high = nrow; \ 145ac7a638eSSatish Balay while (high-low > 3) { \ 146ac7a638eSSatish Balay t = (low+high)/2; \ 147ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 148ac7a638eSSatish Balay else low = t; \ 149ac7a638eSSatish Balay } \ 150ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 151ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 152ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 153ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 154ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 155ac7a638eSSatish Balay else *bap = value; \ 156ac7a638eSSatish Balay goto b_noinsert; \ 157ac7a638eSSatish Balay } \ 158ac7a638eSSatish Balay } \ 15989280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 1605f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 161fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 162ac7a638eSSatish Balay N = nrow++ - 1; \ 163ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 1649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\ 1659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1)));\ 1669566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 167ac7a638eSSatish Balay rp[_i] = bcol; \ 168ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 169ac7a638eSSatish Balay b_noinsert:; \ 170ac7a638eSSatish Balay bilen[brow] = nrow; \ 171ac7a638eSSatish Balay } 172ac7a638eSSatish Balay 173b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 17457b952d6SSatish Balay { 17557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 17693fea6afSBarry Smith MatScalar value; 177ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 178b24ad042SBarry Smith PetscInt i,j,row,col; 179d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 180d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 181d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 18257b952d6SSatish Balay 183eada6651SSatish Balay /* Some Variables required in the macro */ 18480c1aa95SSatish Balay Mat A = baij->A; 18580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 186b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1873eda8832SBarry Smith MatScalar *aa =a->a; 188ac7a638eSSatish Balay 189ac7a638eSSatish Balay Mat B = baij->B; 190ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 191b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 1923eda8832SBarry Smith MatScalar *ba =b->a; 193ac7a638eSSatish Balay 194b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 195b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 1963eda8832SBarry Smith MatScalar *ap,*bap; 19780c1aa95SSatish Balay 198d64ed03dSBarry Smith PetscFunctionBegin; 19957b952d6SSatish Balay for (i=0; i<m; i++) { 2005ef9f2a5SBarry Smith if (im[i] < 0) continue; 2015f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 20257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 20357b952d6SSatish Balay row = im[i] - rstart_orig; 20457b952d6SSatish Balay for (j=0; j<n; j++) { 20557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 20657b952d6SSatish Balay col = in[j] - cstart_orig; 207db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 208db4deed7SKarl Rupp else value = v[i+j*m]; 209d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 21073959e64SBarry Smith } else if (in[j] < 0) continue; 2115f80ce2aSJacob Faibussowitsch else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 2129245e749SBarry Smith else { 21357b952d6SSatish Balay if (mat->was_assembled) { 214905e6a2fSBarry Smith if (!baij->colmap) { 2159566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 216905e6a2fSBarry Smith } 217aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2189566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col)); 219bba1ac68SSatish Balay col = col - 1; 22048e59246SSatish Balay #else 221bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 22248e59246SSatish Balay #endif 223c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 2249566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2258295de27SSatish Balay col = in[j]; 2269bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2279bf004c3SSatish Balay B = baij->B; 2289bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2299bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2309bf004c3SSatish Balay ba =b->a; 2315f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 232c9ef50b2SBarry Smith else col += in[j]%bs; 2338295de27SSatish Balay } else col = in[j]; 234db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 235db4deed7SKarl Rupp else value = v[i+j*m]; 236d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 2379566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 23857b952d6SSatish Balay } 23957b952d6SSatish Balay } 240d64ed03dSBarry Smith } else { 2415f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 24290f02eecSBarry Smith if (!baij->donotstash) { 2435080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 244ff2fd236SBarry Smith if (roworiented) { 2459566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE)); 246ff2fd236SBarry Smith } else { 2479566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE)); 24857b952d6SSatish Balay } 24957b952d6SSatish Balay } 25057b952d6SSatish Balay } 25190f02eecSBarry Smith } 2523a40ed3dSBarry Smith PetscFunctionReturn(0); 25357b952d6SSatish Balay } 25457b952d6SSatish Balay 2559fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 256880c6e6aSBarry Smith { 257880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2588ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 259880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2608ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 261880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 262880c6e6aSBarry Smith const PetscScalar *value = v; 263880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 264880c6e6aSBarry Smith 265880c6e6aSBarry Smith PetscFunctionBegin; 266880c6e6aSBarry Smith rp = aj + ai[row]; 267880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 268880c6e6aSBarry Smith rmax = imax[row]; 269880c6e6aSBarry Smith nrow = ailen[row]; 2708ab52850SBarry Smith value = v; 2718ab52850SBarry Smith low = 0; 2728ab52850SBarry Smith high = nrow; 273880c6e6aSBarry Smith while (high-low > 7) { 274880c6e6aSBarry Smith t = (low+high)/2; 275880c6e6aSBarry Smith if (rp[t] > col) high = t; 276880c6e6aSBarry Smith else low = t; 277880c6e6aSBarry Smith } 278880c6e6aSBarry Smith for (i=low; i<high; i++) { 279880c6e6aSBarry Smith if (rp[i] > col) break; 280880c6e6aSBarry Smith if (rp[i] == col) { 281880c6e6aSBarry Smith bap = ap + bs2*i; 282880c6e6aSBarry Smith if (roworiented) { 283880c6e6aSBarry Smith if (is == ADD_VALUES) { 2848ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 285880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 286880c6e6aSBarry Smith bap[jj] += *value++; 287880c6e6aSBarry Smith } 288880c6e6aSBarry Smith } 289880c6e6aSBarry Smith } else { 2908ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 291880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 292880c6e6aSBarry Smith bap[jj] = *value++; 293880c6e6aSBarry Smith } 294880c6e6aSBarry Smith } 295880c6e6aSBarry Smith } 296880c6e6aSBarry Smith } else { 297880c6e6aSBarry Smith if (is == ADD_VALUES) { 2988ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 299880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 300880c6e6aSBarry Smith bap[jj] += value[jj]; 301880c6e6aSBarry Smith } 302880c6e6aSBarry Smith bap += bs; 303880c6e6aSBarry Smith } 304880c6e6aSBarry Smith } else { 3058ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 306880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 307880c6e6aSBarry Smith bap[jj] = value[jj]; 308880c6e6aSBarry Smith } 309880c6e6aSBarry Smith bap += bs; 310880c6e6aSBarry Smith } 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith } 313880c6e6aSBarry Smith goto noinsert2; 314880c6e6aSBarry Smith } 315880c6e6aSBarry Smith } 316880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3175f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 318880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 319880c6e6aSBarry Smith N = nrow++ - 1; high++; 320880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3219566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 3229566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 323880c6e6aSBarry Smith rp[i] = col; 324880c6e6aSBarry Smith bap = ap + bs2*i; 325880c6e6aSBarry Smith if (roworiented) { 3268ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 327880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 328880c6e6aSBarry Smith bap[jj] = *value++; 329880c6e6aSBarry Smith } 330880c6e6aSBarry Smith } 331880c6e6aSBarry Smith } else { 3328ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 333880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 334880c6e6aSBarry Smith *bap++ = *value++; 335880c6e6aSBarry Smith } 336880c6e6aSBarry Smith } 337880c6e6aSBarry Smith } 338880c6e6aSBarry Smith noinsert2:; 339880c6e6aSBarry Smith ailen[row] = nrow; 340880c6e6aSBarry Smith PetscFunctionReturn(0); 341880c6e6aSBarry Smith } 342880c6e6aSBarry Smith 3438ab52850SBarry Smith /* 3448ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3458ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3468ab52850SBarry Smith */ 34797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 348ab26458aSBarry Smith { 349ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 350dd6ea824SBarry Smith const PetscScalar *value; 351f15d580aSBarry Smith MatScalar *barray = baij->barray; 352ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 353899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 354899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 355d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 356ab26458aSBarry Smith 357b16ae2b1SBarry Smith PetscFunctionBegin; 35830793edcSSatish Balay if (!barray) { 3599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 36082502324SSatish Balay baij->barray = barray; 36130793edcSSatish Balay } 36230793edcSSatish Balay 36326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 36426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 36526fbe8dcSKarl Rupp 366ab26458aSBarry Smith for (i=0; i<m; i++) { 3675ef9f2a5SBarry Smith if (im[i] < 0) continue; 3686bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 369ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 370ab26458aSBarry Smith row = im[i] - rstart; 371ab26458aSBarry Smith for (j=0; j<n; j++) { 37215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 37315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 374f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 37515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 376f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 37715b57d14SSatish Balay } else { /* Here a copy is required */ 378ab26458aSBarry Smith if (roworiented) { 37953ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 380ab26458aSBarry Smith } else { 38153ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 382abef11f7SSatish Balay } 38353ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 38426fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 38553ef36baSBarry Smith barray += bs; 38647513183SBarry Smith } 38730793edcSSatish Balay barray -= bs2; 38815b57d14SSatish Balay } 389abef11f7SSatish Balay 390abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 391abef11f7SSatish Balay col = in[j] - cstart; 3929566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 39326fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3946bdcaf15SBarry Smith else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 3959245e749SBarry Smith else { 396ab26458aSBarry Smith if (mat->was_assembled) { 397ab26458aSBarry Smith if (!baij->colmap) { 3989566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 399ab26458aSBarry Smith } 400a5eb4965SSatish Balay 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 402aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 403b24ad042SBarry Smith { PetscInt data; 4049566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 40508401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 406fa46199cSSatish Balay } 40748e59246SSatish Balay #else 40808401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 409a5eb4965SSatish Balay #endif 41048e59246SSatish Balay #endif 411aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4129566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 413fa46199cSSatish Balay col = (col - 1)/bs; 41448e59246SSatish Balay #else 415a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 41648e59246SSatish Balay #endif 4170e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 4189566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 419ab26458aSBarry Smith col = in[j]; 4205f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix",im[i],in[j]); 421db4deed7SKarl Rupp } else col = in[j]; 4229566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 423ab26458aSBarry Smith } 424ab26458aSBarry Smith } 425d64ed03dSBarry Smith } else { 4265f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 427ab26458aSBarry Smith if (!baij->donotstash) { 428ff2fd236SBarry Smith if (roworiented) { 4299566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 430ff2fd236SBarry Smith } else { 4319566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 432ff2fd236SBarry Smith } 433abef11f7SSatish Balay } 434ab26458aSBarry Smith } 435ab26458aSBarry Smith } 4363a40ed3dSBarry Smith PetscFunctionReturn(0); 437ab26458aSBarry Smith } 4386fa18ffdSBarry Smith 4390bdbc534SSatish Balay #define HASH_KEY 0.6180339887 440b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 441b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 442b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 44397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4440bdbc534SSatish Balay { 4450bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 446ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 447b24ad042SBarry Smith PetscInt i,j,row,col; 448d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 449d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 450d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 451329f5518SBarry Smith PetscReal tmp; 4523eda8832SBarry Smith MatScalar **HD = baij->hd,value; 453b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4540bdbc534SSatish Balay 4550bdbc534SSatish Balay PetscFunctionBegin; 4560bdbc534SSatish Balay for (i=0; i<m; i++) { 45776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 4585f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 4595f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 46076bd3646SJed Brown } 4610bdbc534SSatish Balay row = im[i]; 462c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4630bdbc534SSatish Balay for (j=0; j<n; j++) { 4640bdbc534SSatish Balay col = in[j]; 465db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 466db4deed7SKarl Rupp else value = v[i+j*m]; 467b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 468c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 469c2760754SSatish Balay h1 = HASH(size,key,tmp); 4700bdbc534SSatish Balay 471c2760754SSatish Balay idx = h1; 47276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 473187ce0cbSSatish Balay insert_ct++; 474187ce0cbSSatish Balay total_ct++; 475187ce0cbSSatish Balay if (HT[idx] != key) { 476187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 477187ce0cbSSatish Balay if (idx == size) { 478187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 4795f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 480187ce0cbSSatish Balay } 481187ce0cbSSatish Balay } 48276bd3646SJed Brown } else if (HT[idx] != key) { 483c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 484c2760754SSatish Balay if (idx == size) { 485c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 4865f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 487c2760754SSatish Balay } 488c2760754SSatish Balay } 489c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 490c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 491c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4920bdbc534SSatish Balay } 49326fbe8dcSKarl Rupp } else if (!baij->donotstash) { 494ff2fd236SBarry Smith if (roworiented) { 4959566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE)); 496ff2fd236SBarry Smith } else { 4979566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE)); 4980bdbc534SSatish Balay } 4990bdbc534SSatish Balay } 5000bdbc534SSatish Balay } 50176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 502abf3b562SBarry Smith baij->ht_total_ct += total_ct; 503abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 50476bd3646SJed Brown } 5050bdbc534SSatish Balay PetscFunctionReturn(0); 5060bdbc534SSatish Balay } 5070bdbc534SSatish Balay 50897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5090bdbc534SSatish Balay { 5100bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 511ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 512b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 513899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 514d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 515b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 516329f5518SBarry Smith PetscReal tmp; 5173eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 518dd6ea824SBarry Smith const PetscScalar *v_t,*value; 519b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5200bdbc534SSatish Balay 521d0a41580SSatish Balay PetscFunctionBegin; 52226fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 52326fbe8dcSKarl Rupp else stepval = (m-1)*bs; 52426fbe8dcSKarl Rupp 5250bdbc534SSatish Balay for (i=0; i<m; i++) { 52676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5275f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %" PetscInt_FMT,im[i]); 5285f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 52976bd3646SJed Brown } 5300bdbc534SSatish Balay row = im[i]; 531ab715e2cSSatish Balay v_t = v + i*nbs2; 532c2760754SSatish Balay if (row >= rstart && row < rend) { 5330bdbc534SSatish Balay for (j=0; j<n; j++) { 5340bdbc534SSatish Balay col = in[j]; 5350bdbc534SSatish Balay 5360bdbc534SSatish Balay /* Look up into the Hash Table */ 537c2760754SSatish Balay key = row*Nbs+col+1; 538c2760754SSatish Balay h1 = HASH(size,key,tmp); 5390bdbc534SSatish Balay 540c2760754SSatish Balay idx = h1; 54176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 542187ce0cbSSatish Balay total_ct++; 543187ce0cbSSatish Balay insert_ct++; 544187ce0cbSSatish Balay if (HT[idx] != key) { 545187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 546187ce0cbSSatish Balay if (idx == size) { 547187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 5485f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 549187ce0cbSSatish Balay } 550187ce0cbSSatish Balay } 55176bd3646SJed Brown } else if (HT[idx] != key) { 552c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 553c2760754SSatish Balay if (idx == size) { 554c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 5555f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 556c2760754SSatish Balay } 557c2760754SSatish Balay } 558c2760754SSatish Balay baij_a = HD[idx]; 5590bdbc534SSatish Balay if (roworiented) { 560c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 561187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 562187ce0cbSSatish Balay value = v_t; 563187ce0cbSSatish Balay v_t += bs; 564fef45726SSatish Balay if (addv == ADD_VALUES) { 565c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 566c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 567fef45726SSatish Balay baij_a[jj] += *value++; 568b4cc0f5aSSatish Balay } 569b4cc0f5aSSatish Balay } 570fef45726SSatish Balay } else { 571c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 572c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 573fef45726SSatish Balay baij_a[jj] = *value++; 574fef45726SSatish Balay } 575fef45726SSatish Balay } 576fef45726SSatish Balay } 5770bdbc534SSatish Balay } else { 5780bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 579fef45726SSatish Balay if (addv == ADD_VALUES) { 580b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5810bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 582fef45726SSatish Balay baij_a[jj] += *value++; 583fef45726SSatish Balay } 584fef45726SSatish Balay } 585fef45726SSatish Balay } else { 586fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 587fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 588fef45726SSatish Balay baij_a[jj] = *value++; 589fef45726SSatish Balay } 590b4cc0f5aSSatish Balay } 5910bdbc534SSatish Balay } 5920bdbc534SSatish Balay } 5930bdbc534SSatish Balay } 5940bdbc534SSatish Balay } else { 5950bdbc534SSatish Balay if (!baij->donotstash) { 5960bdbc534SSatish Balay if (roworiented) { 5979566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 5980bdbc534SSatish Balay } else { 5999566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6000bdbc534SSatish Balay } 6010bdbc534SSatish Balay } 6020bdbc534SSatish Balay } 6030bdbc534SSatish Balay } 60476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 605abf3b562SBarry Smith baij->ht_total_ct += total_ct; 606abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 60776bd3646SJed Brown } 6080bdbc534SSatish Balay PetscFunctionReturn(0); 6090bdbc534SSatish Balay } 610133cdb44SSatish Balay 611b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 612d6de1c52SSatish Balay { 613d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 614d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 615d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 616d6de1c52SSatish Balay 617133cdb44SSatish Balay PetscFunctionBegin; 618d6de1c52SSatish Balay for (i=0; i<m; i++) { 61954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 62054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 621d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 622d6de1c52SSatish Balay row = idxm[i] - bsrstart; 623d6de1c52SSatish Balay for (j=0; j<n; j++) { 62454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 62554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 626d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 627d6de1c52SSatish Balay col = idxn[j] - bscstart; 6289566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j)); 629d64ed03dSBarry Smith } else { 630905e6a2fSBarry Smith if (!baij->colmap) { 6319566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 632905e6a2fSBarry Smith } 633aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6349566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data)); 635fa46199cSSatish Balay data--; 63648e59246SSatish Balay #else 63748e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 63848e59246SSatish Balay #endif 63948e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 640d9d09a02SSatish Balay else { 64148e59246SSatish Balay col = data + idxn[j]%bs; 6429566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j)); 643d6de1c52SSatish Balay } 644d6de1c52SSatish Balay } 645d6de1c52SSatish Balay } 646f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 647d6de1c52SSatish Balay } 6483a40ed3dSBarry Smith PetscFunctionReturn(0); 649d6de1c52SSatish Balay } 650d6de1c52SSatish Balay 651dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 652d6de1c52SSatish Balay { 653d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 654d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 655d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 656329f5518SBarry Smith PetscReal sum = 0.0; 6573eda8832SBarry Smith MatScalar *v; 658d6de1c52SSatish Balay 659d64ed03dSBarry Smith PetscFunctionBegin; 660d6de1c52SSatish Balay if (baij->size == 1) { 6619566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A,type,nrm)); 662d6de1c52SSatish Balay } else { 663d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 664d6de1c52SSatish Balay v = amat->a; 6658a62d963SHong Zhang nz = amat->nz*bs2; 6668a62d963SHong Zhang for (i=0; i<nz; i++) { 667329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 668d6de1c52SSatish Balay } 669d6de1c52SSatish Balay v = bmat->a; 6708a62d963SHong Zhang nz = bmat->nz*bs2; 6718a62d963SHong Zhang for (i=0; i<nz; i++) { 672329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 673d6de1c52SSatish Balay } 6741c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 6758f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6768a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6778a62d963SHong Zhang PetscReal *tmp,*tmp2; 678899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 6799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N,&tmp)); 6809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N,&tmp2)); 6818a62d963SHong Zhang v = amat->a; jj = amat->j; 6828a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6838a62d963SHong Zhang for (j=0; j<bs; j++) { 6848a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6858a62d963SHong Zhang for (row=0; row<bs; row++) { 6868a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6878a62d963SHong Zhang } 6888a62d963SHong Zhang } 6898a62d963SHong Zhang jj++; 6908a62d963SHong Zhang } 6918a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6928a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6938a62d963SHong Zhang for (j=0; j<bs; j++) { 6948a62d963SHong Zhang col = bs*garray[*jj] + j; 6958a62d963SHong Zhang for (row=0; row<bs; row++) { 6968a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6978a62d963SHong Zhang } 6988a62d963SHong Zhang } 6998a62d963SHong Zhang jj++; 7008a62d963SHong Zhang } 7011c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 7028a62d963SHong Zhang *nrm = 0.0; 703d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7048a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7058a62d963SHong Zhang } 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7079566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7088a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 709577dd1f9SKris Buschelman PetscReal *sums; 7109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&sums)); 7118a62d963SHong Zhang sum = 0.0; 7128a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7138a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7148a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7158a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7168a62d963SHong Zhang for (i=0; i<nz; i++) { 7178a62d963SHong Zhang for (col=0; col<bs; col++) { 7188a62d963SHong Zhang for (row=0; row<bs; row++) { 7198a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7208a62d963SHong Zhang } 7218a62d963SHong Zhang } 7228a62d963SHong Zhang } 7238a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7248a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7258a62d963SHong Zhang for (i=0; i<nz; i++) { 7268a62d963SHong Zhang for (col=0; col<bs; col++) { 7278a62d963SHong Zhang for (row=0; row<bs; row++) { 7288a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7298a62d963SHong Zhang } 7308a62d963SHong Zhang } 7318a62d963SHong Zhang } 7328a62d963SHong Zhang for (row=0; row<bs; row++) { 7338a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7348a62d963SHong Zhang } 7358a62d963SHong Zhang } 7361c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat))); 7379566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 738ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 739d64ed03dSBarry Smith } 7403a40ed3dSBarry Smith PetscFunctionReturn(0); 741d6de1c52SSatish Balay } 74257b952d6SSatish Balay 743fef45726SSatish Balay /* 744fef45726SSatish Balay Creates the hash table, and sets the table 745fef45726SSatish Balay This table is created only once. 746fef45726SSatish Balay If new entried need to be added to the matrix 747fef45726SSatish Balay then the hash table has to be destroyed and 748fef45726SSatish Balay recreated. 749fef45726SSatish Balay */ 750dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 751596b8d2eSBarry Smith { 752596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 753596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 754596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 755b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 756fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 757899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 758b24ad042SBarry Smith PetscInt *HT,key; 7593eda8832SBarry Smith MatScalar **HD; 760329f5518SBarry Smith PetscReal tmp; 7616cf91177SBarry Smith #if defined(PETSC_USE_INFO) 762b24ad042SBarry Smith PetscInt ct=0,max=0; 7634a15367fSSatish Balay #endif 764fef45726SSatish Balay 765d64ed03dSBarry Smith PetscFunctionBegin; 766fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 767fef45726SSatish Balay 768fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 769fca92195SBarry Smith ht_size = baij->ht_size; 7700bdbc534SSatish Balay 771fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7729566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht)); 773b9e4cc15SSatish Balay HD = baij->hd; 774a07cd24cSSatish Balay HT = baij->ht; 775b9e4cc15SSatish Balay 776596b8d2eSBarry Smith /* Loop Over A */ 7770bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 778596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7790bdbc534SSatish Balay row = i+rstart; 7800bdbc534SSatish Balay col = aj[j]+cstart; 781596b8d2eSBarry Smith 782187ce0cbSSatish Balay key = row*Nbs + col + 1; 783fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 784fca92195SBarry Smith for (k=0; k<ht_size; k++) { 785fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 786fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 787fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 788596b8d2eSBarry Smith break; 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay } else { 791187ce0cbSSatish Balay ct++; 792187ce0cbSSatish Balay #endif 793596b8d2eSBarry Smith } 794187ce0cbSSatish Balay } 7956cf91177SBarry Smith #if defined(PETSC_USE_INFO) 796187ce0cbSSatish Balay if (k> max) max = k; 797187ce0cbSSatish Balay #endif 798596b8d2eSBarry Smith } 799596b8d2eSBarry Smith } 800596b8d2eSBarry Smith /* Loop Over B */ 8010bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 802596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8030bdbc534SSatish Balay row = i+rstart; 8040bdbc534SSatish Balay col = garray[bj[j]]; 805187ce0cbSSatish Balay key = row*Nbs + col + 1; 806fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 807fca92195SBarry Smith for (k=0; k<ht_size; k++) { 808fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 809fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 810fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 811596b8d2eSBarry Smith break; 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay } else { 814187ce0cbSSatish Balay ct++; 815187ce0cbSSatish Balay #endif 816596b8d2eSBarry Smith } 817187ce0cbSSatish Balay } 8186cf91177SBarry Smith #if defined(PETSC_USE_INFO) 819187ce0cbSSatish Balay if (k> max) max = k; 820187ce0cbSSatish Balay #endif 821596b8d2eSBarry Smith } 822596b8d2eSBarry Smith } 823596b8d2eSBarry Smith 824596b8d2eSBarry Smith /* Print Summary */ 8256cf91177SBarry Smith #if defined(PETSC_USE_INFO) 826fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 82726fbe8dcSKarl Rupp if (HT[i]) j++; 828c38d4ed2SBarry Smith } 8299566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Average Search = %5.2g,max search = %" PetscInt_FMT "\n",(!j) ? (double)0.0:(double)(((PetscReal)(ct+j))/(double)j),max)); 830187ce0cbSSatish Balay #endif 8313a40ed3dSBarry Smith PetscFunctionReturn(0); 832596b8d2eSBarry Smith } 83357b952d6SSatish Balay 834dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 835bbb85fb3SSatish Balay { 836bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 837b24ad042SBarry Smith PetscInt nstash,reallocs; 838bbb85fb3SSatish Balay 839bbb85fb3SSatish Balay PetscFunctionBegin; 84026fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 841bbb85fb3SSatish Balay 8429566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 8439566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs)); 8449566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 8459566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 8469566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs)); 8479566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 848bbb85fb3SSatish Balay PetscFunctionReturn(0); 849bbb85fb3SSatish Balay } 850bbb85fb3SSatish Balay 851dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 852bbb85fb3SSatish Balay { 853bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85491c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 855b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 856e44c0bd4SBarry Smith PetscInt *row,*col; 857ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8583eda8832SBarry Smith MatScalar *val; 859b24ad042SBarry Smith PetscMPIInt n; 860bbb85fb3SSatish Balay 861bbb85fb3SSatish Balay PetscFunctionBegin; 8625fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8634cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 864a2d1c673SSatish Balay while (1) { 8659566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 866a2d1c673SSatish Balay if (!flg) break; 867a2d1c673SSatish Balay 868bbb85fb3SSatish Balay for (i=0; i<n;) { 869bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87026fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 87126fbe8dcSKarl Rupp if (row[j] != rstart) break; 87226fbe8dcSKarl Rupp } 873bbb85fb3SSatish Balay if (j < n) ncols = j-i; 874bbb85fb3SSatish Balay else ncols = n-i; 875bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8769566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 877bbb85fb3SSatish Balay i = j; 878bbb85fb3SSatish Balay } 879bbb85fb3SSatish Balay } 8809566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 881a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 882a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 883a2d1c673SSatish Balay restore the original flags */ 884a2d1c673SSatish Balay r1 = baij->roworiented; 885a2d1c673SSatish Balay r2 = a->roworiented; 88691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 88726fbe8dcSKarl Rupp 8887c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8897c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89026fbe8dcSKarl Rupp 89191c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 892a2d1c673SSatish Balay while (1) { 8939566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg)); 894a2d1c673SSatish Balay if (!flg) break; 895a2d1c673SSatish Balay 896a2d1c673SSatish Balay for (i=0; i<n;) { 897a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 89826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 89926fbe8dcSKarl Rupp if (row[j] != rstart) break; 90026fbe8dcSKarl Rupp } 901a2d1c673SSatish Balay if (j < n) ncols = j-i; 902a2d1c673SSatish Balay else ncols = n-i; 9039566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode)); 904a2d1c673SSatish Balay i = j; 905a2d1c673SSatish Balay } 906a2d1c673SSatish Balay } 9079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 90826fbe8dcSKarl Rupp 909a2d1c673SSatish Balay baij->roworiented = r1; 910a2d1c673SSatish Balay a->roworiented = r2; 91126fbe8dcSKarl Rupp 91291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 913bbb85fb3SSatish Balay } 914bbb85fb3SSatish Balay 9159566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A,mode)); 9169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A,mode)); 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 919bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 920bbb85fb3SSatish Balay /* 921bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 922bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 923bbb85fb3SSatish Balay */ 924bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 926bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 9279566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 928bbb85fb3SSatish Balay } 929bbb85fb3SSatish Balay } 930bbb85fb3SSatish Balay 931bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 9329566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 933bbb85fb3SSatish Balay } 9349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B,mode)); 9359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B,mode)); 936bbb85fb3SSatish Balay 9376cf91177SBarry Smith #if defined(PETSC_USE_INFO) 938bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9399566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct)); 94026fbe8dcSKarl Rupp 941bbb85fb3SSatish Balay baij->ht_total_ct = 0; 942bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 943bbb85fb3SSatish Balay } 944bbb85fb3SSatish Balay #endif 945bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9469566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact)); 94726fbe8dcSKarl Rupp 948bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 949bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 950bbb85fb3SSatish Balay } 951bbb85fb3SSatish Balay 9529566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 95326fbe8dcSKarl Rupp 954f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9554f9cfa9eSBarry Smith 9564f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9574f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 958e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 9591c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 960e56f5c9eSBarry Smith } 961bbb85fb3SSatish Balay PetscFunctionReturn(0); 962bbb85fb3SSatish Balay } 96357b952d6SSatish Balay 9647da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9659804daf3SBarry Smith #include <petscdraw.h> 9666849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96757b952d6SSatish Balay { 96857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9697da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 970d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 971ace3abfcSBarry Smith PetscBool iascii,isdraw; 972b0a32e0cSBarry Smith PetscViewer sviewer; 973f3ef73ceSBarry Smith PetscViewerFormat format; 97457b952d6SSatish Balay 975d64ed03dSBarry Smith PetscFunctionBegin; 9769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 9779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 97832077d6dSBarry Smith if (iascii) { 9799566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 980456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9814e220ebcSLois Curfman McInnes MatInfo info; 9829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 9839566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 9849566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", 9865f80ce2aSJacob Faibussowitsch rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory)); 9879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info)); 9889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 9899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info)); 9909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 9919566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 9949566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx,viewer)); 9953a40ed3dSBarry Smith PetscFunctionReturn(0); 996fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," block size is %" PetscInt_FMT "\n",bs)); 9983a40ed3dSBarry Smith PetscFunctionReturn(0); 99904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 100004929863SHong Zhang PetscFunctionReturn(0); 100157b952d6SSatish Balay } 100257b952d6SSatish Balay } 100357b952d6SSatish Balay 10040f5bd95cSBarry Smith if (isdraw) { 1005b0a32e0cSBarry Smith PetscDraw draw; 1006ace3abfcSBarry Smith PetscBool isnull; 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 10089566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 100945f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 101057b952d6SSatish Balay } 101157b952d6SSatish Balay 10127da1fb6eSBarry Smith { 101357b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101457b952d6SSatish Balay Mat A; 101557b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1016d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10173eda8832SBarry Smith MatScalar *a; 10183e219373SBarry Smith const char *matname; 101957b952d6SSatish Balay 1020f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1021f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 1023dd400576SPatrick Sanan if (rank == 0) { 10249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 1025d64ed03dSBarry Smith } else { 10269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 102757b952d6SSatish Balay } 10289566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIBAIJ)); 10299566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL)); 10309566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 10319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 103257b952d6SSatish Balay 103357b952d6SSatish Balay /* copy over the A part */ 103457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 10369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 103757b952d6SSatish Balay 103857b952d6SSatish Balay for (i=0; i<mbs; i++) { 1039899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 104157b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1042899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 104357b952d6SSatish Balay for (k=0; k<bs; k++) { 10449566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 1045cee3aa6bSSatish Balay col++; a += bs; 104657b952d6SSatish Balay } 104757b952d6SSatish Balay } 104857b952d6SSatish Balay } 104957b952d6SSatish Balay /* copy over the B part */ 105057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 105157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 105257b952d6SSatish Balay for (i=0; i<mbs; i++) { 1053899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 105426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 105557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105757b952d6SSatish Balay for (k=0; k<bs; k++) { 10589566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 1059cee3aa6bSSatish Balay col++; a += bs; 106057b952d6SSatish Balay } 106157b952d6SSatish Balay } 106257b952d6SSatish Balay } 10639566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 10659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 106655843e3eSBarry Smith /* 106755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1068b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106955843e3eSBarry Smith */ 10709566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 10719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat,&matname)); 1072dd400576SPatrick Sanan if (rank == 0) { 10739566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname)); 10749566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer)); 107557b952d6SSatish Balay } 10769566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 10779566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 107957b952d6SSatish Balay } 10803a40ed3dSBarry Smith PetscFunctionReturn(0); 108157b952d6SSatish Balay } 108257b952d6SSatish Balay 1083618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1084b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1085660746e0SBarry Smith { 1086b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 1087b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)aij->A->data; 1088b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)aij->B->data; 1089b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1090b51a4376SLisandro Dalcin PetscInt header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l; 1091b51a4376SLisandro Dalcin PetscInt *rowlens,*colidxs; 1092b51a4376SLisandro Dalcin PetscScalar *matvals; 1093660746e0SBarry Smith 1094660746e0SBarry Smith PetscFunctionBegin; 10959566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1096b51a4376SLisandro Dalcin 1097b51a4376SLisandro Dalcin M = mat->rmap->N; 1098b51a4376SLisandro Dalcin N = mat->cmap->N; 1099b51a4376SLisandro Dalcin m = mat->rmap->n; 1100b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1101b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1102b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1103b51a4376SLisandro Dalcin nz = bs*bs*(A->nz + B->nz); 1104b51a4376SLisandro Dalcin 1105b51a4376SLisandro Dalcin /* write matrix header */ 1106660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1107b51a4376SLisandro Dalcin header[1] = M; header[2] = N; header[3] = nz; 11089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat))); 11099566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT)); 1110660746e0SBarry Smith 1111b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rowlens)); 1113b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1114b51a4376SLisandro Dalcin for (j=0; j<bs; j++) 1115b51a4376SLisandro Dalcin rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]); 11169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT)); 11179566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1118660746e0SBarry Smith 1119b51a4376SLisandro Dalcin /* fill in and store column indices */ 11209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&colidxs)); 1121b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1122b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1123b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1124b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1125b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1126b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1127660746e0SBarry Smith } 1128b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1129b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1130b51a4376SLisandro Dalcin colidxs[cnt++] = bs*A->j[ja] + l + cs; 1131b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1132b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1133b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1134660746e0SBarry Smith } 1135660746e0SBarry Smith } 11365f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz); 11379566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT)); 11389566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1139660746e0SBarry Smith 1140b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&matvals)); 1142b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1143b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1144b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1145b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1146b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1147b51a4376SLisandro Dalcin matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1148660746e0SBarry Smith } 1149b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1150b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1151b51a4376SLisandro Dalcin matvals[cnt++] = A->a[bs*(bs*ja + l) + k]; 1152b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1153b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1154d21b9a37SPierre Jolivet matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1155660746e0SBarry Smith } 1156b51a4376SLisandro Dalcin } 11579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR)); 11589566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1159660746e0SBarry Smith 1160b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 11619566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat,viewer)); 1162660746e0SBarry Smith PetscFunctionReturn(0); 1163660746e0SBarry Smith } 1164660746e0SBarry Smith 1165dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 116657b952d6SSatish Balay { 1167ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 116857b952d6SSatish Balay 1169d64ed03dSBarry Smith PetscFunctionBegin; 11709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 11719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 11729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 11739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 1174660746e0SBarry Smith if (iascii || isdraw || issocket) { 11759566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer)); 1176660746e0SBarry Smith } else if (isbinary) { 11779566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_Binary(mat,viewer)); 117857b952d6SSatish Balay } 11793a40ed3dSBarry Smith PetscFunctionReturn(0); 118057b952d6SSatish Balay } 118157b952d6SSatish Balay 1182dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 118379bdfe76SSatish Balay { 118479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 118579bdfe76SSatish Balay 1186d64ed03dSBarry Smith PetscFunctionBegin; 1187aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1188c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 118979bdfe76SSatish Balay #endif 11909566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 11919566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 11929566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 11939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 1194aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 11959566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 119648e59246SSatish Balay #else 11979566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 119848e59246SSatish Balay #endif 11999566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 12009566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 12019566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 12029566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 12039566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 12049566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->hd,baij->ht)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 12069566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1207901853e0SKris Buschelman 12089566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 12099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL)); 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL)); 12139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL)); 12149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL)); 12159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL)); 12169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL)); 12177ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL)); 12197ea3e4caSstefano_zampini #endif 12209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL)); 12213a40ed3dSBarry Smith PetscFunctionReturn(0); 122279bdfe76SSatish Balay } 122379bdfe76SSatish Balay 1224dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1225cee3aa6bSSatish Balay { 1226cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1227b24ad042SBarry Smith PetscInt nt; 1228cee3aa6bSSatish Balay 1229d64ed03dSBarry Smith PetscFunctionBegin; 12309566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&nt)); 12315f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 12329566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy,&nt)); 12335f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 12349566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12359566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,yy)); 12369566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12379566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy)); 12383a40ed3dSBarry Smith PetscFunctionReturn(0); 1239cee3aa6bSSatish Balay } 1240cee3aa6bSSatish Balay 1241dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1242cee3aa6bSSatish Balay { 1243cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1244d64ed03dSBarry Smith 1245d64ed03dSBarry Smith PetscFunctionBegin; 12469566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12479566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz)); 12489566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12499566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz)); 12503a40ed3dSBarry Smith PetscFunctionReturn(0); 1251cee3aa6bSSatish Balay } 1252cee3aa6bSSatish Balay 1253dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1254cee3aa6bSSatish Balay { 1255cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1256cee3aa6bSSatish Balay 1257d64ed03dSBarry Smith PetscFunctionBegin; 1258cee3aa6bSSatish Balay /* do nondiagonal part */ 12599566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 1260cee3aa6bSSatish Balay /* do local part */ 12619566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy)); 1262e4a140f6SJunchao Zhang /* add partial results together */ 12639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 12649566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 12653a40ed3dSBarry Smith PetscFunctionReturn(0); 1266cee3aa6bSSatish Balay } 1267cee3aa6bSSatish Balay 1268dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1269cee3aa6bSSatish Balay { 1270cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1271cee3aa6bSSatish Balay 1272d64ed03dSBarry Smith PetscFunctionBegin; 1273cee3aa6bSSatish Balay /* do nondiagonal part */ 12749566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 1275cee3aa6bSSatish Balay /* do local part */ 12769566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz)); 1277e4a140f6SJunchao Zhang /* add partial results together */ 12789566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 12799566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 12803a40ed3dSBarry Smith PetscFunctionReturn(0); 1281cee3aa6bSSatish Balay } 1282cee3aa6bSSatish Balay 1283cee3aa6bSSatish Balay /* 1284cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1285cee3aa6bSSatish Balay diagonal block 1286cee3aa6bSSatish Balay */ 1287dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1288cee3aa6bSSatish Balay { 1289d64ed03dSBarry Smith PetscFunctionBegin; 12905f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12919566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ*)A->data)->A,v)); 12923a40ed3dSBarry Smith PetscFunctionReturn(0); 1293cee3aa6bSSatish Balay } 1294cee3aa6bSSatish Balay 1295f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1296cee3aa6bSSatish Balay { 1297cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1298d64ed03dSBarry Smith 1299d64ed03dSBarry Smith PetscFunctionBegin; 13009566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 13019566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 13023a40ed3dSBarry Smith PetscFunctionReturn(0); 1303cee3aa6bSSatish Balay } 1304026e39d0SSatish Balay 1305b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1306acdf5bf4SSatish Balay { 1307acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 130887828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1309d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1310d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1311899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1312acdf5bf4SSatish Balay 1313d64ed03dSBarry Smith PetscFunctionBegin; 13145f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 13155f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1316acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1317acdf5bf4SSatish Balay 1318acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1319acdf5bf4SSatish Balay /* 1320acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1321acdf5bf4SSatish Balay */ 1322acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1323b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1324bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1325acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 132626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1327acdf5bf4SSatish Balay } 13289566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices)); 1329acdf5bf4SSatish Balay } 1330d9d09a02SSatish Balay lrow = row - brstart; 1331acdf5bf4SSatish Balay 1332acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1333f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1334f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 13359566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA)); 13369566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB)); 1337acdf5bf4SSatish Balay nztot = nzA + nzB; 1338acdf5bf4SSatish Balay 1339acdf5bf4SSatish Balay cmap = mat->garray; 1340acdf5bf4SSatish Balay if (v || idx) { 1341acdf5bf4SSatish Balay if (nztot) { 1342acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1343b24ad042SBarry Smith PetscInt imark = -1; 1344acdf5bf4SSatish Balay if (v) { 1345acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1346acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1347d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1348acdf5bf4SSatish Balay else break; 1349acdf5bf4SSatish Balay } 1350acdf5bf4SSatish Balay imark = i; 1351acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1352acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1353acdf5bf4SSatish Balay } 1354acdf5bf4SSatish Balay if (idx) { 1355acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1356acdf5bf4SSatish Balay if (imark > -1) { 1357acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1358bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1359acdf5bf4SSatish Balay } 1360acdf5bf4SSatish Balay } else { 1361acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 136226fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1363acdf5bf4SSatish Balay else break; 1364acdf5bf4SSatish Balay } 1365acdf5bf4SSatish Balay imark = i; 1366acdf5bf4SSatish Balay } 1367d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1368d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1369acdf5bf4SSatish Balay } 1370d64ed03dSBarry Smith } else { 1371f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1372f4259b30SLisandro Dalcin if (v) *v = NULL; 1373d212a18eSSatish Balay } 1374acdf5bf4SSatish Balay } 1375acdf5bf4SSatish Balay *nz = nztot; 13769566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA)); 13779566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB)); 13783a40ed3dSBarry Smith PetscFunctionReturn(0); 1379acdf5bf4SSatish Balay } 1380acdf5bf4SSatish Balay 1381b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1382acdf5bf4SSatish Balay { 1383acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1384d64ed03dSBarry Smith 1385d64ed03dSBarry Smith PetscFunctionBegin; 13865f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1387acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13883a40ed3dSBarry Smith PetscFunctionReturn(0); 1389acdf5bf4SSatish Balay } 1390acdf5bf4SSatish Balay 1391dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 139258667388SSatish Balay { 139358667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1394d64ed03dSBarry Smith 1395d64ed03dSBarry Smith PetscFunctionBegin; 13969566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13979566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 13983a40ed3dSBarry Smith PetscFunctionReturn(0); 139958667388SSatish Balay } 14000ac07820SSatish Balay 1401dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14020ac07820SSatish Balay { 14034e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14044e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14053966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 14060ac07820SSatish Balay 1407d64ed03dSBarry Smith PetscFunctionBegin; 1408d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 140926fbe8dcSKarl Rupp 14109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 141126fbe8dcSKarl Rupp 14120e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1413de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 141426fbe8dcSKarl Rupp 14159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 141626fbe8dcSKarl Rupp 14170e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1418de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 141926fbe8dcSKarl Rupp 14200ac07820SSatish Balay if (flag == MAT_LOCAL) { 14214e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14224e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14234e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14244e220ebcSLois Curfman McInnes info->memory = isend[3]; 14254e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14260ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14271c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 142826fbe8dcSKarl Rupp 14294e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14304e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14314e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14324e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14334e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14340ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14351c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 143626fbe8dcSKarl Rupp 14374e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14384e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14394e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14404e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14414e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 144298921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14434e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14444e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14454e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14463a40ed3dSBarry Smith PetscFunctionReturn(0); 14470ac07820SSatish Balay } 14480ac07820SSatish Balay 1449ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 145058667388SSatish Balay { 145158667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 145258667388SSatish Balay 1453d64ed03dSBarry Smith PetscFunctionBegin; 145412c028f9SKris Buschelman switch (op) { 1455512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 145612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 145728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1458a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 145912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 146043674050SBarry Smith MatCheckPreallocated(A,1); 14619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14629566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 146312c028f9SKris Buschelman break; 146412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 146543674050SBarry Smith MatCheckPreallocated(A,1); 14664e0d8c25SBarry Smith a->roworiented = flg; 146726fbe8dcSKarl Rupp 14689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14699566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 147012c028f9SKris Buschelman break; 14718c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1472071fcb05SBarry Smith case MAT_SORTED_FULL: 14739566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 147412c028f9SKris Buschelman break; 147512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14764e0d8c25SBarry Smith a->donotstash = flg; 147712c028f9SKris Buschelman break; 147812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14794e0d8c25SBarry Smith a->ht_flag = flg; 1480abf3b562SBarry Smith a->ht_fact = 1.39; 148112c028f9SKris Buschelman break; 148277e54ba9SKris Buschelman case MAT_SYMMETRIC: 148377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14842188ac68SBarry Smith case MAT_HERMITIAN: 1485c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14862188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 148743674050SBarry Smith MatCheckPreallocated(A,1); 14889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 148977e54ba9SKris Buschelman break; 149012c028f9SKris Buschelman default: 149198921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1492d64ed03dSBarry Smith } 14933a40ed3dSBarry Smith PetscFunctionReturn(0); 149458667388SSatish Balay } 149558667388SSatish Balay 1496fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14970ac07820SSatish Balay { 14980ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14990ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15000ac07820SSatish Balay Mat B; 1501d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1502d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 15033eda8832SBarry Smith MatScalar *a; 15040ac07820SSatish Balay 1505d64ed03dSBarry Smith PetscFunctionBegin; 1506cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 15089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 15099566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 15102e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15119566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL)); 1512fc4dec0aSBarry Smith } else { 1513fc4dec0aSBarry Smith B = *matout; 1514fc4dec0aSBarry Smith } 15150ac07820SSatish Balay 15160ac07820SSatish Balay /* copy over the A part */ 15170ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15180ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 15200ac07820SSatish Balay 15210ac07820SSatish Balay for (i=0; i<mbs; i++) { 1522899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 152326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15240ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1525899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 15260ac07820SSatish Balay for (k=0; k<bs; k++) { 15279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES)); 152826fbe8dcSKarl Rupp 15290ac07820SSatish Balay col++; a += bs; 15300ac07820SSatish Balay } 15310ac07820SSatish Balay } 15320ac07820SSatish Balay } 15330ac07820SSatish Balay /* copy over the B part */ 15340ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15350ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15360ac07820SSatish Balay for (i=0; i<mbs; i++) { 1537899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 153826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15390ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15400ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15410ac07820SSatish Balay for (k=0; k<bs; k++) { 15429566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES)); 154326fbe8dcSKarl Rupp col++; 154426fbe8dcSKarl Rupp a += bs; 15450ac07820SSatish Balay } 15460ac07820SSatish Balay } 15470ac07820SSatish Balay } 15489566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15499566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 15509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 15510ac07820SSatish Balay 1552cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 155326fbe8dcSKarl Rupp else { 15549566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 15550ac07820SSatish Balay } 15563a40ed3dSBarry Smith PetscFunctionReturn(0); 15570ac07820SSatish Balay } 15580e95ebc0SSatish Balay 1559dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15600e95ebc0SSatish Balay { 156136c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 156236c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1563b24ad042SBarry Smith PetscInt s1,s2,s3; 15640e95ebc0SSatish Balay 1565d64ed03dSBarry Smith PetscFunctionBegin; 15669566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&s2,&s3)); 156736c4a09eSSatish Balay if (rr) { 15689566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s1)); 15695f80ce2aSJacob Faibussowitsch PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 157036c4a09eSSatish Balay /* Overlap communication with computation. */ 15719566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 157236c4a09eSSatish Balay } 15730e95ebc0SSatish Balay if (ll) { 15749566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s1)); 15755f80ce2aSJacob Faibussowitsch PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 15769566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 15770e95ebc0SSatish Balay } 157836c4a09eSSatish Balay /* scale the diagonal block */ 15799566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 158036c4a09eSSatish Balay 158136c4a09eSSatish Balay if (rr) { 158236c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15839566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 15849566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec)); 158536c4a09eSSatish Balay } 15863a40ed3dSBarry Smith PetscFunctionReturn(0); 15870e95ebc0SSatish Balay } 15880e95ebc0SSatish Balay 15892b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 15900ac07820SSatish Balay { 15910ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 159265a92638SMatthew G. Knepley PetscInt *lrows; 15936e520ac8SStefano Zampini PetscInt r, len; 159494342113SStefano Zampini PetscBool cong; 15950ac07820SSatish Balay 1596d64ed03dSBarry Smith PetscFunctionBegin; 15976e520ac8SStefano Zampini /* get locally owned rows */ 15989566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows)); 159997b48c8fSBarry Smith /* fix right hand side if needed */ 160097b48c8fSBarry Smith if (x && b) { 160165a92638SMatthew G. Knepley const PetscScalar *xx; 160265a92638SMatthew G. Knepley PetscScalar *bb; 160365a92638SMatthew G. Knepley 16049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 16059566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 160665a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 16079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 16089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 160997b48c8fSBarry Smith } 161097b48c8fSBarry Smith 16110ac07820SSatish Balay /* actually zap the local rows */ 161272dacd9aSBarry Smith /* 161372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1614a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 161572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 161672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 161772dacd9aSBarry Smith 161872dacd9aSBarry Smith */ 16199c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16209566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL)); 16219566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&cong)); 162294342113SStefano Zampini if ((diag != 0.0) && cong) { 16239566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL)); 1624f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16259566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL)); 16265f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ*)l->A->data)->nonew,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1627512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 162865a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 162965a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16309566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES)); 1631a07cd24cSSatish Balay } 16329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 16339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 16349c957beeSSatish Balay } else { 16359566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL)); 1636a07cd24cSSatish Balay } 16379566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16384f9cfa9eSBarry Smith 16394f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16404f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1641e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16421c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A))); 1643e56f5c9eSBarry Smith } 16443a40ed3dSBarry Smith PetscFunctionReturn(0); 16450ac07820SSatish Balay } 164672dacd9aSBarry Smith 16476f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16486f0a72daSMatthew G. Knepley { 16496f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1650131c27b5Sprj- PetscMPIInt n = A->rmap->n,p = 0; 1651131c27b5Sprj- PetscInt i,j,k,r,len = 0,row,col,count; 16526f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 16536f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16546f0a72daSMatthew G. Knepley PetscSF sf; 16556f0a72daSMatthew G. Knepley const PetscScalar *xx; 16566f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 16576f0a72daSMatthew G. Knepley Vec xmask,lmask; 16586f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 16596f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16606f0a72daSMatthew G. Knepley PetscScalar *aa; 16616f0a72daSMatthew G. Knepley 16626f0a72daSMatthew G. Knepley PetscFunctionBegin; 16636f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16656f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16676f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16686f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16695f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")",idx,A->rmap->N); 16705ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16719566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap,idx,&p)); 16725ba17502SJed Brown } 16736f0a72daSMatthew G. Knepley rrows[r].rank = p; 16746f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16756f0a72daSMatthew G. Knepley } 16769566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) A), &sf)); 16779566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16786f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16799566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR)); 16809566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR)); 16819566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16826f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16836f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 16846f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16859566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A,len,lrows,diag,x,b)); 16866f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 16879566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,&xmask,NULL)); 16889566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec,&lmask)); 16899566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask,&bb)); 16906f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 16919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask,&bb)); 16929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD)); 16939566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD)); 16949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 16956f0a72daSMatthew G. Knepley if (x) { 16969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD)); 16979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD)); 16989566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec,&xx)); 16999566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 17006f0a72daSMatthew G. Knepley } 17019566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask,&mask)); 17026f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17036f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17046f0a72daSMatthew G. Knepley row = lrows[i]; 17056f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 17066f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 17076f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17086f0a72daSMatthew G. Knepley aa[0] = 0.0; 17096f0a72daSMatthew G. Knepley aa += bs; 17106f0a72daSMatthew G. Knepley } 17116f0a72daSMatthew G. Knepley } 17126f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17136f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17146f0a72daSMatthew G. Knepley row = i/bs; 17156f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 17166f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17176f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 17186f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17196f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 172089ae1891SBarry Smith if (x) bb[i] -= aa[0]*xx[col]; 17216f0a72daSMatthew G. Knepley aa[0] = 0.0; 17226f0a72daSMatthew G. Knepley } 17236f0a72daSMatthew G. Knepley } 17246f0a72daSMatthew G. Knepley } 17256f0a72daSMatthew G. Knepley } 17266f0a72daSMatthew G. Knepley if (x) { 17279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 17289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec,&xx)); 17296f0a72daSMatthew G. Knepley } 17309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask,&mask)); 17319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17329566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17334f9cfa9eSBarry Smith 17344f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17354f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 17364f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17371c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A))); 17384f9cfa9eSBarry Smith } 17396f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17406f0a72daSMatthew G. Knepley } 17416f0a72daSMatthew G. Knepley 1742dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1743bb5a7306SBarry Smith { 1744bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1745d64ed03dSBarry Smith 1746d64ed03dSBarry Smith PetscFunctionBegin; 17479566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17483a40ed3dSBarry Smith PetscFunctionReturn(0); 1749bb5a7306SBarry Smith } 1750bb5a7306SBarry Smith 17516849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 17520ac07820SSatish Balay 1753ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 17547fc3c18eSBarry Smith { 17557fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17567fc3c18eSBarry Smith Mat a,b,c,d; 1757ace3abfcSBarry Smith PetscBool flg; 17587fc3c18eSBarry Smith 17597fc3c18eSBarry Smith PetscFunctionBegin; 17607fc3c18eSBarry Smith a = matA->A; b = matA->B; 17617fc3c18eSBarry Smith c = matB->A; d = matB->B; 17627fc3c18eSBarry Smith 17639566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 1764abc0a331SBarry Smith if (flg) { 17659566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 17667fc3c18eSBarry Smith } 17671c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 17687fc3c18eSBarry Smith PetscFunctionReturn(0); 17697fc3c18eSBarry Smith } 17707fc3c18eSBarry Smith 17713c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17723c896bc6SHong Zhang { 17733c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 17743c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 17753c896bc6SHong Zhang 17763c896bc6SHong Zhang PetscFunctionBegin; 17773c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17783c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17799566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 17803c896bc6SHong Zhang } else { 17819566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 17829566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 17833c896bc6SHong Zhang } 17849566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17853c896bc6SHong Zhang PetscFunctionReturn(0); 17863c896bc6SHong Zhang } 1787273d9f13SBarry Smith 17884994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1789273d9f13SBarry Smith { 1790273d9f13SBarry Smith PetscFunctionBegin; 17919566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 1792273d9f13SBarry Smith PetscFunctionReturn(0); 1793273d9f13SBarry Smith } 1794273d9f13SBarry Smith 17954de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 17964de5dceeSHong Zhang { 1797001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 17984de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 17994de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 18004de5dceeSHong Zhang 18014de5dceeSHong Zhang PetscFunctionBegin; 18029566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz)); 18034de5dceeSHong Zhang PetscFunctionReturn(0); 18044de5dceeSHong Zhang } 18054de5dceeSHong Zhang 18064fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18074fe895cdSHong Zhang { 18084fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 18094fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18104fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 1811b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs*Y->rmap->bs; 18124fe895cdSHong Zhang 18134fe895cdSHong Zhang PetscFunctionBegin; 18144fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18154fe895cdSHong Zhang PetscScalar alpha = a; 18164fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 18174fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 18189566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 18198b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18204fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 18214fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 18229566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 18238b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18249566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1825ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18269566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y,a,X,str)); 18274fe895cdSHong Zhang } else { 18284de5dceeSHong Zhang Mat B; 18294de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d)); 18319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o)); 18329566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B)); 18339566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name)); 18349566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N)); 18359566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B,Y,Y)); 18369566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIBAIJ)); 18379566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d)); 18389566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o)); 18399566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o)); 18404de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18419566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str)); 18429566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y,&B)); 18439566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18449566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18454fe895cdSHong Zhang } 18464fe895cdSHong Zhang PetscFunctionReturn(0); 18474fe895cdSHong Zhang } 18484fe895cdSHong Zhang 18492726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 18502726fb6dSPierre Jolivet { 18515f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18525f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18532726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 18542726fb6dSPierre Jolivet 18559566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18569566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18575f80ce2aSJacob Faibussowitsch } 18582726fb6dSPierre Jolivet PetscFunctionReturn(0); 18592726fb6dSPierre Jolivet } 18602726fb6dSPierre Jolivet 186199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 186299cafbc1SBarry Smith { 186399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 186499cafbc1SBarry Smith 186599cafbc1SBarry Smith PetscFunctionBegin; 18669566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18679566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 186899cafbc1SBarry Smith PetscFunctionReturn(0); 186999cafbc1SBarry Smith } 187099cafbc1SBarry Smith 187199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 187299cafbc1SBarry Smith { 187399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 187499cafbc1SBarry Smith 187599cafbc1SBarry Smith PetscFunctionBegin; 18769566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18779566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 187899cafbc1SBarry Smith PetscFunctionReturn(0); 187999cafbc1SBarry Smith } 188099cafbc1SBarry Smith 18817dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18824aa3045dSJed Brown { 18834aa3045dSJed Brown IS iscol_local; 18844aa3045dSJed Brown PetscInt csize; 18854aa3045dSJed Brown 18864aa3045dSJed Brown PetscFunctionBegin; 18879566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&csize)); 1888b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18899566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local)); 18905f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1891b79d0421SJed Brown } else { 18929566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 1893b79d0421SJed Brown } 18949566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat)); 1895b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 18969566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local)); 18979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1898b79d0421SJed Brown } 18994aa3045dSJed Brown PetscFunctionReturn(0); 19004aa3045dSJed Brown } 190117df9f7cSHong Zhang 190282094794SBarry Smith /* 190382094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 190482094794SBarry Smith in local and then by concatenating the local matrices the end result. 19057dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19068f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 190782094794SBarry Smith */ 19087dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 190982094794SBarry Smith { 191082094794SBarry Smith PetscMPIInt rank,size; 191182094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 1912c9ffca76SHong Zhang PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 191329dcf524SDmitry Karpeev Mat M,Mreuse; 191482094794SBarry Smith MatScalar *vwork,*aa; 1915ce94432eSBarry Smith MPI_Comm comm; 191629dcf524SDmitry Karpeev IS isrow_new, iscol_new; 191782094794SBarry Smith Mat_SeqBAIJ *aij; 191882094794SBarry Smith 191982094794SBarry Smith PetscFunctionBegin; 19209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat,&comm)); 19219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 19229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 192329dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 192429dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19259566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new)); 19269566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new)); 192782094794SBarry Smith 192882094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse)); 19305f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 19319566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse)); 193282094794SBarry Smith } else { 19339566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse)); 193482094794SBarry Smith } 19359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 193782094794SBarry Smith /* 193882094794SBarry Smith m - number of local rows 193982094794SBarry Smith n - number of columns (same on all processors) 194082094794SBarry Smith rstart - first row in new global matrix generated 194182094794SBarry Smith */ 19429566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat,&bs)); 19439566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse,&m,&n)); 194482094794SBarry Smith m = m/bs; 194582094794SBarry Smith n = n/bs; 194682094794SBarry Smith 194782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 194882094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 194982094794SBarry Smith ii = aij->i; 195082094794SBarry Smith jj = aij->j; 195182094794SBarry Smith 195282094794SBarry Smith /* 195382094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 195482094794SBarry Smith portions of the matrix in order to do correct preallocation 195582094794SBarry Smith */ 195682094794SBarry Smith 195782094794SBarry Smith /* first get start and end of "diagonal" columns */ 195882094794SBarry Smith if (csize == PETSC_DECIDE) { 19599566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow,&mglobal)); 196082094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 196182094794SBarry Smith nlocal = m; 196282094794SBarry Smith } else { 196382094794SBarry Smith nlocal = n/size + ((n % size) > rank); 196482094794SBarry Smith } 196582094794SBarry Smith } else { 196682094794SBarry Smith nlocal = csize/bs; 196782094794SBarry Smith } 19689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm)); 196982094794SBarry Smith rstart = rend - nlocal; 1970aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT,rend,n); 197182094794SBarry Smith 197282094794SBarry Smith /* next, compute all the lengths */ 19739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m+1,&dlens,m+1,&olens)); 197482094794SBarry Smith for (i=0; i<m; i++) { 197582094794SBarry Smith jend = ii[i+1] - ii[i]; 197682094794SBarry Smith olen = 0; 197782094794SBarry Smith dlen = 0; 197882094794SBarry Smith for (j=0; j<jend; j++) { 197982094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 198082094794SBarry Smith else dlen++; 198182094794SBarry Smith jj++; 198282094794SBarry Smith } 198382094794SBarry Smith olens[i] = olen; 198482094794SBarry Smith dlens[i] = dlen; 198582094794SBarry Smith } 19869566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&M)); 19879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n)); 19889566063dSJacob Faibussowitsch PetscCall(MatSetType(M,((PetscObject)mat)->type_name)); 19899566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens)); 19909566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens)); 19919566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens,olens)); 199282094794SBarry Smith } else { 199382094794SBarry Smith PetscInt ml,nl; 199482094794SBarry Smith 199582094794SBarry Smith M = *newmat; 19969566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M,&ml,&nl)); 19975f80ce2aSJacob Faibussowitsch PetscCheck(ml == m,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 19989566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 199982094794SBarry Smith /* 200082094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 200182094794SBarry Smith rather than the slower MatSetValues(). 200282094794SBarry Smith */ 200382094794SBarry Smith M->was_assembled = PETSC_TRUE; 200482094794SBarry Smith M->assembled = PETSC_FALSE; 200582094794SBarry Smith } 20069566063dSJacob Faibussowitsch PetscCall(MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE)); 20079566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M,&rstart,&rend)); 200882094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 200982094794SBarry Smith ii = aij->i; 201082094794SBarry Smith jj = aij->j; 201182094794SBarry Smith aa = aij->a; 201282094794SBarry Smith for (i=0; i<m; i++) { 201382094794SBarry Smith row = rstart/bs + i; 201482094794SBarry Smith nz = ii[i+1] - ii[i]; 201582094794SBarry Smith cwork = jj; jj += nz; 201675f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 20179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES)); 201882094794SBarry Smith } 201982094794SBarry Smith 20209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY)); 20219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY)); 202282094794SBarry Smith *newmat = M; 202382094794SBarry Smith 202482094794SBarry Smith /* save submatrix used in processor for next request */ 202582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20269566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse)); 20279566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 202882094794SBarry Smith } 202982094794SBarry Smith PetscFunctionReturn(0); 203082094794SBarry Smith } 203182094794SBarry Smith 203282094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 203382094794SBarry Smith { 203482094794SBarry Smith MPI_Comm comm,pcomm; 2035a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 203682094794SBarry Smith const PetscInt *rows; 2037dbf0e21dSBarry Smith PetscMPIInt size; 2038a0a83eb5SRémi Lacroix IS crowp,lcolp; 203982094794SBarry Smith 204082094794SBarry Smith PetscFunctionBegin; 20419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 204282094794SBarry Smith /* make a collective version of 'rowp' */ 20439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp,&pcomm)); 204482094794SBarry Smith if (pcomm==comm) { 204582094794SBarry Smith crowp = rowp; 204682094794SBarry Smith } else { 20479566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp,&nrows)); 20489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp,&rows)); 20499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp)); 20509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp,&rows)); 205182094794SBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2053a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp,&pcomm)); 20559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm,&size)); 2056dbf0e21dSBarry Smith if (size==1) { 205782094794SBarry Smith lcolp = colp; 205882094794SBarry Smith } else { 20599566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp,&lcolp)); 206082094794SBarry Smith } 20619566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 206275f6568bSJed Brown /* now we just get the submatrix */ 20639566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,NULL,&clocal_size)); 20649566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B)); 2065a0a83eb5SRémi Lacroix /* clean up */ 2066a0a83eb5SRémi Lacroix if (pcomm!=comm) { 20679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&crowp)); 2068a0a83eb5SRémi Lacroix } 2069dbf0e21dSBarry Smith if (size>1) { 20709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&lcolp)); 207182094794SBarry Smith } 207282094794SBarry Smith PetscFunctionReturn(0); 207382094794SBarry Smith } 207482094794SBarry Smith 20757087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20768c7482ecSBarry Smith { 20778c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20788c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20798c7482ecSBarry Smith 20808c7482ecSBarry Smith PetscFunctionBegin; 208126fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208226fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20838c7482ecSBarry Smith PetscFunctionReturn(0); 20848c7482ecSBarry Smith } 20858c7482ecSBarry Smith 2086d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2087f6d58c54SBarry Smith { 2088f6d58c54SBarry Smith Mat B; 2089f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2090f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2091f6d58c54SBarry Smith Mat_SeqAIJ *b; 2092f4259b30SLisandro Dalcin PetscMPIInt size,rank,*recvcounts = NULL,*displs = NULL; 2093f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2094f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2095f6d58c54SBarry Smith 2096f6d58c54SBarry Smith PetscFunctionBegin; 20979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 20989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank)); 2099f6d58c54SBarry Smith 2100f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2101f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2102f6d58c54SBarry Smith */ 21039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N/bs,&lens)); 2104f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2105f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2106f6d58c54SBarry Smith } 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*size,&recvcounts)); 2108f6d58c54SBarry Smith displs = recvcounts + size; 2109f6d58c54SBarry Smith for (i=0; i<size; i++) { 2110f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2111f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2112f6d58c54SBarry Smith } 21139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A))); 2114f6d58c54SBarry Smith /* --------------------------------------------------------------- 2115f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2116f6d58c54SBarry Smith */ 21179566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&B)); 21189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE)); 21199566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATSEQAIJ)); 21209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,lens)); 2121f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2122f6d58c54SBarry Smith 2123f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2124f6d58c54SBarry Smith Copy my part of matrix column indices over 2125f6d58c54SBarry Smith */ 2126f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2127f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2128f6d58c54SBarry Smith a_jsendbuf = ad->j; 2129f6d58c54SBarry Smith b_jsendbuf = bd->j; 2130f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2131f6d58c54SBarry Smith cnt = 0; 2132f6d58c54SBarry Smith for (i=0; i<n; i++) { 2133f6d58c54SBarry Smith 2134f6d58c54SBarry Smith /* put in lower diagonal portion */ 2135f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2136f6d58c54SBarry Smith while (m > 0) { 2137f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2138f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2139f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2140f6d58c54SBarry Smith m--; 2141f6d58c54SBarry Smith } 2142f6d58c54SBarry Smith 2143f6d58c54SBarry Smith /* put in diagonal portion */ 2144f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2145f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2146f6d58c54SBarry Smith } 2147f6d58c54SBarry Smith 2148f6d58c54SBarry Smith /* put in upper diagonal portion */ 2149f6d58c54SBarry Smith while (m-- > 0) { 2150f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2151f6d58c54SBarry Smith } 2152f6d58c54SBarry Smith } 21535f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT,sendcount,cnt); 2154f6d58c54SBarry Smith 2155f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2156f6d58c54SBarry Smith Gather all column indices to all processors 2157f6d58c54SBarry Smith */ 2158f6d58c54SBarry Smith for (i=0; i<size; i++) { 2159f6d58c54SBarry Smith recvcounts[i] = 0; 2160f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2161f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2162f6d58c54SBarry Smith } 2163f6d58c54SBarry Smith } 2164f6d58c54SBarry Smith displs[0] = 0; 2165f6d58c54SBarry Smith for (i=1; i<size; i++) { 2166f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2167f6d58c54SBarry Smith } 21689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A))); 2169f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2170f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2171f6d58c54SBarry Smith */ 2172f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21739566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen,lens,A->rmap->N/bs)); 2174f6d58c54SBarry Smith /* set the b->i indices */ 2175f6d58c54SBarry Smith b->i[0] = 0; 2176f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2177f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2178f6d58c54SBarry Smith } 21799566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 21819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 21829566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2183f6d58c54SBarry Smith 2184f6d58c54SBarry Smith if (A->symmetric) { 21859566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE)); 2186f6d58c54SBarry Smith } else if (A->hermitian) { 21879566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE)); 2188f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 21899566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE)); 2190f6d58c54SBarry Smith } 2191f6d58c54SBarry Smith *newmat = B; 2192f6d58c54SBarry Smith PetscFunctionReturn(0); 2193f6d58c54SBarry Smith } 2194f6d58c54SBarry Smith 2195b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2196b1a666ecSBarry Smith { 2197b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2198f4259b30SLisandro Dalcin Vec bb1 = NULL; 2199b1a666ecSBarry Smith 2200b1a666ecSBarry Smith PetscFunctionBegin; 2201b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 22029566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2203b1a666ecSBarry Smith PetscFunctionReturn(0); 2204b1a666ecSBarry Smith } 2205b1a666ecSBarry Smith 22064e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 22079566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 22084e980039SJed Brown } 22094e980039SJed Brown 2210b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2211b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2213b1a666ecSBarry Smith its--; 2214b1a666ecSBarry Smith } 2215b1a666ecSBarry Smith 2216b1a666ecSBarry Smith while (its--) { 22179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2219b1a666ecSBarry Smith 2220b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22219566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22229566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2223b1a666ecSBarry Smith 2224b1a666ecSBarry Smith /* local sweep */ 22259566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx)); 2226b1a666ecSBarry Smith } 2227b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2228b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2230b1a666ecSBarry Smith its--; 2231b1a666ecSBarry Smith } 2232b1a666ecSBarry Smith while (its--) { 22339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2235b1a666ecSBarry Smith 2236b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22379566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22389566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2239b1a666ecSBarry Smith 2240b1a666ecSBarry Smith /* local sweep */ 22419566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx)); 2242b1a666ecSBarry Smith } 2243b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2244b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2246b1a666ecSBarry Smith its--; 2247b1a666ecSBarry Smith } 2248b1a666ecSBarry Smith while (its--) { 22499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22509566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2251b1a666ecSBarry Smith 2252b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22539566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2255b1a666ecSBarry Smith 2256b1a666ecSBarry Smith /* local sweep */ 22579566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx)); 2258b1a666ecSBarry Smith } 2259ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2260b1a666ecSBarry Smith 22619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2262b1a666ecSBarry Smith PetscFunctionReturn(0); 2263b1a666ecSBarry Smith } 2264b1a666ecSBarry Smith 2265857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A,PetscInt type,PetscReal *reductions) 226647f7623dSRémi Lacroix { 226747f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 2268a873a8cdSSam Reynolds PetscInt m,N,i,*garray = aij->garray; 226947f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 227047f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 227147f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 227247f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 227347f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 227447f7623dSRémi Lacroix PetscReal *work; 227547f7623dSRémi Lacroix 227647f7623dSRémi Lacroix PetscFunctionBegin; 22779566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&N)); 22789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N,&work)); 2279857cbf51SRichard Tran Mills if (type == NORM_2) { 228047f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 228147f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 228247f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 228347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 228447f7623dSRémi Lacroix a_val++; 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix } 228747f7623dSRémi Lacroix } 228847f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 228947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 229047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 229147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 229247f7623dSRémi Lacroix b_val++; 229347f7623dSRémi Lacroix } 229447f7623dSRémi Lacroix } 229547f7623dSRémi Lacroix } 2296857cbf51SRichard Tran Mills } else if (type == NORM_1) { 229747f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 229847f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 229947f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 230047f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 230147f7623dSRémi Lacroix a_val++; 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix } 230447f7623dSRémi Lacroix } 230547f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 230647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 230747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 230847f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 230947f7623dSRémi Lacroix b_val++; 231047f7623dSRémi Lacroix } 231147f7623dSRémi Lacroix } 231247f7623dSRémi Lacroix } 2313857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 231447f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 231547f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 231647f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 231747f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 231847f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 231947f7623dSRémi Lacroix a_val++; 232047f7623dSRémi Lacroix } 232147f7623dSRémi Lacroix } 232247f7623dSRémi Lacroix } 232347f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 232447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 232547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 232647f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 232747f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 232847f7623dSRémi Lacroix b_val++; 232947f7623dSRémi Lacroix } 233047f7623dSRémi Lacroix } 233147f7623dSRémi Lacroix } 2332857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2333a873a8cdSSam Reynolds for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 2334a873a8cdSSam Reynolds for (jb=0; jb<bs; jb++) { 2335a873a8cdSSam Reynolds for (ib=0; ib<bs; ib++) { 2336857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2337a873a8cdSSam Reynolds a_val++; 2338a873a8cdSSam Reynolds } 2339a873a8cdSSam Reynolds } 2340a873a8cdSSam Reynolds } 2341a873a8cdSSam Reynolds for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 2342a873a8cdSSam Reynolds for (jb=0; jb<bs; jb++) { 2343a873a8cdSSam Reynolds for (ib=0; ib<bs; ib++) { 2344857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2345a873a8cdSSam Reynolds b_val++; 2346a873a8cdSSam Reynolds } 2347a873a8cdSSam Reynolds } 2348a873a8cdSSam Reynolds } 2349857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2350857cbf51SRichard Tran Mills for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 2351857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 2352857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 2353857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2354857cbf51SRichard Tran Mills a_val++; 2355857cbf51SRichard Tran Mills } 2356857cbf51SRichard Tran Mills } 2357857cbf51SRichard Tran Mills } 2358857cbf51SRichard Tran Mills for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 2359857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 2360857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 2361857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2362857cbf51SRichard Tran Mills b_val++; 2363857cbf51SRichard Tran Mills } 2364857cbf51SRichard Tran Mills } 2365857cbf51SRichard Tran Mills } 2366857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type"); 2367857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 236947f7623dSRémi Lacroix } else { 23701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 237147f7623dSRémi Lacroix } 23729566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2373857cbf51SRichard Tran Mills if (type == NORM_2) { 2374a873a8cdSSam Reynolds for (i=0; i<N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2375857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2376a873a8cdSSam Reynolds for (i=0; i<N; i++) reductions[i] /= m; 237747f7623dSRémi Lacroix } 237847f7623dSRémi Lacroix PetscFunctionReturn(0); 237947f7623dSRémi Lacroix } 238047f7623dSRémi Lacroix 2381713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2382bbead8a2SBarry Smith { 2383bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2384bbead8a2SBarry Smith 2385bbead8a2SBarry Smith PetscFunctionBegin; 23869566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A,values)); 23877b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23887b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23897b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2390bbead8a2SBarry Smith PetscFunctionReturn(0); 2391bbead8a2SBarry Smith } 2392bbead8a2SBarry Smith 23937d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 23947d68702bSBarry Smith { 23957d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 23966f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 23977d68702bSBarry Smith 23987d68702bSBarry Smith PetscFunctionBegin; 23996f33a894SBarry Smith if (!Y->preallocated) { 24009566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL)); 24016f33a894SBarry Smith } else if (!aij->nz) { 2402b83222d8SBarry Smith PetscInt nonew = aij->nonew; 24039566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL)); 2404b83222d8SBarry Smith aij->nonew = nonew; 24057d68702bSBarry Smith } 24069566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 24077d68702bSBarry Smith PetscFunctionReturn(0); 24087d68702bSBarry Smith } 24098c7482ecSBarry Smith 24103b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 24113b49f96aSBarry Smith { 24123b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 24133b49f96aSBarry Smith 24143b49f96aSBarry Smith PetscFunctionBegin; 24155f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 24169566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 24173b49f96aSBarry Smith if (d) { 24183b49f96aSBarry Smith PetscInt rstart; 24199566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 24203b49f96aSBarry Smith *d += rstart/A->rmap->bs; 24213b49f96aSBarry Smith 24223b49f96aSBarry Smith } 24233b49f96aSBarry Smith PetscFunctionReturn(0); 24243b49f96aSBarry Smith } 24253b49f96aSBarry Smith 2426a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 2427a5b7ff6bSBarry Smith { 2428a5b7ff6bSBarry Smith PetscFunctionBegin; 2429a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 2430a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2431a5b7ff6bSBarry Smith } 2432a5b7ff6bSBarry Smith 243379bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24343964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2435cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2436cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2437cc2dc46cSBarry Smith MatMult_MPIBAIJ, 243897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24397c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24407c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 2443f4259b30SLisandro Dalcin NULL, 2444f4259b30SLisandro Dalcin /*10*/ NULL, 2445f4259b30SLisandro Dalcin NULL, 2446f4259b30SLisandro Dalcin NULL, 2447b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2448cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24507fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2451cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2452cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2453cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 245497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2455cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2456cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2457cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2458d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2459f4259b30SLisandro Dalcin NULL, 2460f4259b30SLisandro Dalcin NULL, 2461f4259b30SLisandro Dalcin NULL, 2462f4259b30SLisandro Dalcin NULL, 24634994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin NULL, 2466a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2467f4259b30SLisandro Dalcin NULL, 2468d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin NULL, 2471f4259b30SLisandro Dalcin NULL, 2472f4259b30SLisandro Dalcin NULL, 2473d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24747dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2475cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2476cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24773c896bc6SHong Zhang MatCopy_MPIBAIJ, 2478f4259b30SLisandro Dalcin /*44*/ NULL, 2479cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24807d68702bSBarry Smith MatShift_MPIBAIJ, 2481f4259b30SLisandro Dalcin NULL, 24826f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2483f4259b30SLisandro Dalcin /*49*/ NULL, 2484f4259b30SLisandro Dalcin NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 2487f4259b30SLisandro Dalcin NULL, 248893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2489f4259b30SLisandro Dalcin NULL, 2490cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 249182094794SBarry Smith MatPermute_MPIBAIJ, 2492cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24937dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2494f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2495f14a1c24SBarry Smith MatView_MPIBAIJ, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin /*64*/ NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin /*74*/ NULL, 2509f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin /*79*/ NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 25175bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2518f4259b30SLisandro Dalcin /*84*/ NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin /*89*/ NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin /*94*/ NULL, 2529f4259b30SLisandro Dalcin NULL, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin NULL, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin /*99*/ NULL, 2534f4259b30SLisandro Dalcin NULL, 2535f4259b30SLisandro Dalcin NULL, 25362726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin /*104*/NULL, 253999cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25408c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2541f4259b30SLisandro Dalcin NULL, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin /*109*/NULL, 2544f4259b30SLisandro Dalcin NULL, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin NULL, 25473b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2548d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 2549f4259b30SLisandro Dalcin NULL, 25504683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2551f4259b30SLisandro Dalcin NULL, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin /*119*/NULL, 2554f4259b30SLisandro Dalcin NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin NULL, 2557e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2558f4259b30SLisandro Dalcin /*124*/NULL, 2559a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25603964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2561f4259b30SLisandro Dalcin NULL, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin /*129*/ NULL, 2564f4259b30SLisandro Dalcin NULL, 2565f4259b30SLisandro Dalcin NULL, 2566f4259b30SLisandro Dalcin NULL, 2567f4259b30SLisandro Dalcin NULL, 2568f4259b30SLisandro Dalcin /*134*/ NULL, 2569f4259b30SLisandro Dalcin NULL, 2570f4259b30SLisandro Dalcin NULL, 2571f4259b30SLisandro Dalcin NULL, 2572f4259b30SLisandro Dalcin NULL, 257346533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2574f4259b30SLisandro Dalcin NULL, 2575f4259b30SLisandro Dalcin NULL, 2576bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2577f4259b30SLisandro Dalcin NULL, 2578d70f29a3SPierre Jolivet /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2579d70f29a3SPierre Jolivet NULL, 2580d70f29a3SPierre Jolivet NULL, 2581d70f29a3SPierre Jolivet NULL 25828c7482ecSBarry Smith }; 258379bdfe76SSatish Balay 2584cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*); 2585c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 2586d94109b8SHong Zhang 2587cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2588aac34f13SBarry Smith { 2589b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2590f4259b30SLisandro Dalcin PetscInt i,j,dlen,olen,nz,nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 2591f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 2592f4259b30SLisandro Dalcin PetscScalar *values=NULL; 2593d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 25943bd0feecSPierre Jolivet PetscBool nooffprocentries; 2595aac34f13SBarry Smith 2596aac34f13SBarry Smith PetscFunctionBegin; 25979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap,bs)); 25989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap,bs)); 25999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26019566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2602d0f46423SBarry Smith m = B->rmap->n/bs; 2603d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2604d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2605d0f46423SBarry Smith cend = B->cmap->rend/bs; 2606b8d659d7SLisandro Dalcin 26075f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]); 26089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz)); 2609aac34f13SBarry Smith for (i=0; i<m; i++) { 2610cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 26115f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz); 2612b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 261337cd3c0dSBarry Smith dlen = 0; 261437cd3c0dSBarry Smith olen = 0; 2615cf12db73SBarry Smith JJ = jj + ii[i]; 2616b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 261737cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261837cd3c0dSBarry Smith else dlen++; 2619aac34f13SBarry Smith JJ++; 2620aac34f13SBarry Smith } 262137cd3c0dSBarry Smith d_nnz[i] = dlen; 262237cd3c0dSBarry Smith o_nnz[i] = olen; 2623aac34f13SBarry Smith } 26249566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz)); 26259566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 2626aac34f13SBarry Smith 2627b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2628b8d659d7SLisandro Dalcin if (!values) { 26299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*bs*nz_max,&values)); 2630b8d659d7SLisandro Dalcin } 2631b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2632b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2633cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2634cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2635bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2636cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 26379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES)); 26383adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26393adadaf3SJed Brown PetscInt j; 26403adadaf3SJed Brown for (j=0; j<ncols; j++) { 26413adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 26429566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES)); 26433adadaf3SJed Brown } 26443adadaf3SJed Brown } 2645aac34f13SBarry Smith } 2646aac34f13SBarry Smith 26479566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26483bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26493bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 26519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 26523bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26533bd0feecSPierre Jolivet 26549566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 2655aac34f13SBarry Smith PetscFunctionReturn(0); 2656aac34f13SBarry Smith } 2657aac34f13SBarry Smith 2658aac34f13SBarry Smith /*@C 2659664954b6SBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 2660aac34f13SBarry Smith 2661d083f849SBarry Smith Collective 2662aac34f13SBarry Smith 2663aac34f13SBarry Smith Input Parameters: 26641c4f3114SJed Brown + B - the matrix 2665dfb205c3SBarry Smith . bs - the block size 2666aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2667aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2668aac34f13SBarry Smith - v - optional values in the matrix 2669aac34f13SBarry Smith 2670664954b6SBarry Smith Level: advanced 2671aac34f13SBarry Smith 267295452b02SPatrick Sanan Notes: 267395452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26743adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26753adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26763adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26773adadaf3SJed Brown block column and the second index is over columns within a block. 26783adadaf3SJed Brown 2679664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2680664954b6SBarry Smith 2681db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2682aac34f13SBarry Smith @*/ 26837087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2684aac34f13SBarry Smith { 2685aac34f13SBarry Smith PetscFunctionBegin; 26866ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 26876ba663aaSJed Brown PetscValidType(B,1); 26886ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 2689cac4c232SBarry Smith PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v)); 2690aac34f13SBarry Smith PetscFunctionReturn(0); 2691aac34f13SBarry Smith } 2692aac34f13SBarry Smith 2693b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2694a23d5eceSKris Buschelman { 2695a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2696535b19f3SBarry Smith PetscInt i; 26975d2a9ed1SStefano Zampini PetscMPIInt size; 2698a23d5eceSKris Buschelman 2699a23d5eceSKris Buschelman PetscFunctionBegin; 27009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,PetscAbs(bs))); 27019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27039566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2704899cda47SBarry Smith 2705a23d5eceSKris Buschelman if (d_nnz) { 2706d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 27075f80ce2aSJacob Faibussowitsch PetscCheck(d_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]); 2708a23d5eceSKris Buschelman } 2709a23d5eceSKris Buschelman } 2710a23d5eceSKris Buschelman if (o_nnz) { 2711d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 27125f80ce2aSJacob Faibussowitsch PetscCheck(o_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]); 2713a23d5eceSKris Buschelman } 2714a23d5eceSKris Buschelman } 2715a23d5eceSKris Buschelman 2716a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2717a23d5eceSKris Buschelman b->bs2 = bs*bs; 2718d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2719d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2720d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2721d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2722a23d5eceSKris Buschelman 2723a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2724d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2725a23d5eceSKris Buschelman } 2726d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2727d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2728d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2729d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2730a23d5eceSKris Buschelman 2731cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 27329566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 2733cb7b82ddSBarry Smith #else 27349566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2735cb7b82ddSBarry Smith #endif 27369566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27389566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2739cb7b82ddSBarry Smith 2740cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 27429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27439566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 27449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0)); 27459566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQBAIJ)); 27469566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 2747cb7b82ddSBarry Smith 2748526dfc15SBarry Smith if (!B->preallocated) { 27499566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 27509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 27519566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQBAIJ)); 27529566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 27539566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash)); 2754526dfc15SBarry Smith } 2755a23d5eceSKris Buschelman 27569566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz)); 27579566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz)); 2758526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2759cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2760cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2761a23d5eceSKris Buschelman PetscFunctionReturn(0); 2762a23d5eceSKris Buschelman } 2763a23d5eceSKris Buschelman 27647087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 27657087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 27665bf65638SKris Buschelman 2767cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 276882094794SBarry Smith { 276982094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 277082094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 277182094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 277282094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 277382094794SBarry Smith 277482094794SBarry Smith PetscFunctionBegin; 27759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M+1,&ii)); 277682094794SBarry Smith ii[0] = 0; 277782094794SBarry Smith for (i=0; i<M; i++) { 277808401ef6SPierre Jolivet PetscCheck((id[i+1] - id[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,id[i],id[i+1]); 277908401ef6SPierre Jolivet PetscCheck((io[i+1] - io[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,io[i],io[i+1]); 278082094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 27815ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27825ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 27835ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 27845ee9ba1cSJed Brown } 278582094794SBarry Smith } 27869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M],&jj)); 278782094794SBarry Smith cnt = 0; 278882094794SBarry Smith for (i=0; i<M; i++) { 278982094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 279082094794SBarry Smith if (garray[jo[j]] > rstart) break; 279182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279282094794SBarry Smith } 279382094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 27945ee9ba1cSJed Brown if (jd[k] != i) { 279582094794SBarry Smith jj[cnt++] = rstart + jd[k]; 279682094794SBarry Smith } 27975ee9ba1cSJed Brown } 279882094794SBarry Smith for (; j<io[i+1]; j++) { 279982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 280082094794SBarry Smith } 280182094794SBarry Smith } 28029566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj)); 280382094794SBarry Smith PetscFunctionReturn(0); 280482094794SBarry Smith } 280582094794SBarry Smith 2806c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 280762471d69SBarry Smith 2808cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2809b2573a8aSBarry Smith 2810cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 281162471d69SBarry Smith { 281262471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 281385a69837SSatish Balay Mat_MPIAIJ *b; 28145f80ce2aSJacob Faibussowitsch Mat B; 281562471d69SBarry Smith 281662471d69SBarry Smith PetscFunctionBegin; 28175f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 281862471d69SBarry Smith 28190f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28200f6d62edSLisandro Dalcin B = *newmat; 28210f6d62edSLisandro Dalcin } else { 28229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 28239566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIAIJ)); 28249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 28259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 28269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 28279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 28280f6d62edSLisandro Dalcin } 282962471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 283062471d69SBarry Smith 28310f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28329566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28339566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28340f6d62edSLisandro Dalcin } else { 28359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28379566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(A)); 28389566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28399566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 28419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 28420f6d62edSLisandro Dalcin } 28439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 28449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 28450f6d62edSLisandro Dalcin 2846511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28479566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 284862471d69SBarry Smith } else { 284962471d69SBarry Smith *newmat = B; 285062471d69SBarry Smith } 285162471d69SBarry Smith PetscFunctionReturn(0); 285262471d69SBarry Smith } 285362471d69SBarry Smith 28540bad9183SKris Buschelman /*MC 2855fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28560bad9183SKris Buschelman 28570bad9183SKris Buschelman Options Database Keys: 28588c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28598c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28606679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 286167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28620bad9183SKris Buschelman 28630bad9183SKris Buschelman Level: beginner 28640cd7f59aSBarry Smith 28650cd7f59aSBarry Smith Notes: 28660cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 28670cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 28680bad9183SKris Buschelman 2869db781477SPatrick Sanan .seealso: `MatCreateBAIJ` 28700bad9183SKris Buschelman M*/ 28710bad9183SKris Buschelman 2872cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2873c0cdd4a1SDahai Guo 28748cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2875273d9f13SBarry Smith { 2876273d9f13SBarry Smith Mat_MPIBAIJ *b; 287794ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2878273d9f13SBarry Smith 2879273d9f13SBarry Smith PetscFunctionBegin; 28809566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 288182502324SSatish Balay B->data = (void*)b; 288282502324SSatish Balay 28839566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 2884273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2885273d9f13SBarry Smith 2886273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 28889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size)); 2889273d9f13SBarry Smith 2890273d9f13SBarry Smith /* build local table of row and column ownerships */ 28919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size+1,&b->rangebs)); 2892273d9f13SBarry Smith 2893273d9f13SBarry Smith /* build cache for off array entries formed */ 28949566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 289526fbe8dcSKarl Rupp 2896273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28970298fd71SBarry Smith b->colmap = NULL; 28980298fd71SBarry Smith b->garray = NULL; 2899273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith /* stuff used in block assembly */ 2902f4259b30SLisandro Dalcin b->barray = NULL; 2903273d9f13SBarry Smith 2904273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2905f4259b30SLisandro Dalcin b->lvec = NULL; 2906f4259b30SLisandro Dalcin b->Mvctx = NULL; 2907273d9f13SBarry Smith 2908273d9f13SBarry Smith /* stuff for MatGetRow() */ 2909f4259b30SLisandro Dalcin b->rowindices = NULL; 2910f4259b30SLisandro Dalcin b->rowvalues = NULL; 2911273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2912273d9f13SBarry Smith 2913273d9f13SBarry Smith /* hash table stuff */ 2914f4259b30SLisandro Dalcin b->ht = NULL; 2915f4259b30SLisandro Dalcin b->hd = NULL; 2916273d9f13SBarry Smith b->ht_size = 0; 2917273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2918273d9f13SBarry Smith b->ht_fact = 0; 2919273d9f13SBarry Smith b->ht_total_ct = 0; 2920273d9f13SBarry Smith b->ht_insert_ct = 0; 2921273d9f13SBarry Smith 29227dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29237a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29247a868f3eSHong Zhang 29259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj)); 29269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ)); 29279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ)); 29287ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE)); 29307ea3e4caSstefano_zampini #endif 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ)); 29329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ)); 29339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ)); 29349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ)); 29369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ)); 29379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS)); 29389566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ)); 293994ae4db5SBarry Smith 2940d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat"); 29419566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg)); 294294ae4db5SBarry Smith if (flg) { 294394ae4db5SBarry Smith PetscReal fact = 1.39; 29449566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE)); 29459566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL)); 294694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29479566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B,fact)); 29489566063dSJacob Faibussowitsch PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact)); 294994ae4db5SBarry Smith } 2950d0609cedSBarry Smith PetscOptionsEnd(); 2951273d9f13SBarry Smith PetscFunctionReturn(0); 2952273d9f13SBarry Smith } 2953273d9f13SBarry Smith 2954209238afSKris Buschelman /*MC 2955002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2956209238afSKris Buschelman 2957209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2958209238afSKris Buschelman and MATMPIBAIJ otherwise. 2959209238afSKris Buschelman 2960209238afSKris Buschelman Options Database Keys: 2961209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2962209238afSKris Buschelman 2963209238afSKris Buschelman Level: beginner 2964209238afSKris Buschelman 2965*c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2966209238afSKris Buschelman M*/ 2967209238afSKris Buschelman 2968273d9f13SBarry Smith /*@C 2969aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2970273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2971273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2972273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2973273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2974273d9f13SBarry Smith 2975273d9f13SBarry Smith Collective on Mat 2976273d9f13SBarry Smith 2977273d9f13SBarry Smith Input Parameters: 29781c4f3114SJed Brown + B - the matrix 2979bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2980bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2981273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2982273d9f13SBarry Smith submatrix (same for all local rows) 2983273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2984273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29850298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 298695742e49SBarry Smith set it even if it is zero. 2987273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2988273d9f13SBarry Smith submatrix (same for all local rows). 2989273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2990273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 29910298fd71SBarry Smith each block row) or NULL. 2992273d9f13SBarry Smith 299349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Options Database Keys: 29968c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 299767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2998273d9f13SBarry Smith 2999273d9f13SBarry Smith Notes: 3000273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3001273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3002273d9f13SBarry Smith 3003273d9f13SBarry Smith Storage Information: 3004273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3005273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3006273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3007273d9f13SBarry Smith local matrix (a rectangular submatrix). 3008273d9f13SBarry Smith 3009273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3010273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 30110298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3012273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3013273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3014273d9f13SBarry Smith 3015273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3016273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3017273d9f13SBarry Smith 3018273d9f13SBarry Smith .vb 3019273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3020a4b1a0f6SJed Brown -------------------------- 3021273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3022273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3023273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3024a4b1a0f6SJed Brown -------------------------- 3025273d9f13SBarry Smith .ve 3026273d9f13SBarry Smith 3027273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3028273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3029273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3030273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3031273d9f13SBarry Smith 3032273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3033273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3034273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3035273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3036273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3037273d9f13SBarry Smith matrices. 3038273d9f13SBarry Smith 3039aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3040aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3041aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3042aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3043aa95bbe8SBarry Smith 3044273d9f13SBarry Smith Level: intermediate 3045273d9f13SBarry Smith 3046db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3047273d9f13SBarry Smith @*/ 30487087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3049273d9f13SBarry Smith { 3050273d9f13SBarry Smith PetscFunctionBegin; 30516ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30526ba663aaSJed Brown PetscValidType(B,1); 30536ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 3054cac4c232SBarry Smith PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz)); 3055273d9f13SBarry Smith PetscFunctionReturn(0); 3056273d9f13SBarry Smith } 3057273d9f13SBarry Smith 305879bdfe76SSatish Balay /*@C 305969b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 306079bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 306179bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 306279bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 306379bdfe76SSatish Balay performance can be increased by more than a factor of 50. 306479bdfe76SSatish Balay 3065d083f849SBarry Smith Collective 3066db81eaa0SLois Curfman McInnes 306779bdfe76SSatish Balay Input Parameters: 3068db81eaa0SLois Curfman McInnes + comm - MPI communicator 3069bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3070bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 307179bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 307292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 307492e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 307592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307692e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3077be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3078be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 307947a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 308079bdfe76SSatish Balay submatrix (same for all local rows) 308147a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 308292e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30830298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 308495742e49SBarry Smith and set it even if it is zero. 308547a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 308679bdfe76SSatish Balay submatrix (same for all local rows). 308747a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 308892e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30890298fd71SBarry Smith each block row) or NULL. 309079bdfe76SSatish Balay 309179bdfe76SSatish Balay Output Parameter: 309279bdfe76SSatish Balay . A - the matrix 309379bdfe76SSatish Balay 3094db81eaa0SLois Curfman McInnes Options Database Keys: 30958c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 309667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30973ffaccefSLois Curfman McInnes 3098175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3099f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3100175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3101175b88e8SBarry Smith 3102b259b22eSLois Curfman McInnes Notes: 310349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 310449a6f317SBarry Smith 310547a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 310647a75d0bSBarry Smith 310779bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 310879bdfe76SSatish Balay (possibly both). 310979bdfe76SSatish Balay 3110be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3111be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3112be79a94dSBarry Smith 311379bdfe76SSatish Balay Storage Information: 311479bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 311579bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311679bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311779bdfe76SSatish Balay local matrix (a rectangular submatrix). 311879bdfe76SSatish Balay 311979bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 312079bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31210298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 312279bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 312379bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 312479bdfe76SSatish Balay 312579bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312679bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312779bdfe76SSatish Balay 3128db81eaa0SLois Curfman McInnes .vb 3129db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3130a4b1a0f6SJed Brown -------------------------- 3131db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3132db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3133db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3134a4b1a0f6SJed Brown -------------------------- 3135db81eaa0SLois Curfman McInnes .ve 313679bdfe76SSatish Balay 313779bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313879bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313979bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 314057b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 314179bdfe76SSatish Balay 3142d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3143d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 314479bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 314592e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 314692e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31476da5968aSLois Curfman McInnes matrices. 314879bdfe76SSatish Balay 3149027ccd11SLois Curfman McInnes Level: intermediate 3150027ccd11SLois Curfman McInnes 3151db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 315279bdfe76SSatish Balay @*/ 315369b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 315479bdfe76SSatish Balay { 3155b24ad042SBarry Smith PetscMPIInt size; 315679bdfe76SSatish Balay 3157d64ed03dSBarry Smith PetscFunctionBegin; 31589566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 31599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 31609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 3161273d9f13SBarry Smith if (size > 1) { 31629566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPIBAIJ)); 31639566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz)); 3164273d9f13SBarry Smith } else { 31659566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQBAIJ)); 31669566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz)); 31673914022bSBarry Smith } 31683a40ed3dSBarry Smith PetscFunctionReturn(0); 316979bdfe76SSatish Balay } 3170026e39d0SSatish Balay 31716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31720ac07820SSatish Balay { 31730ac07820SSatish Balay Mat mat; 31740ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3175b24ad042SBarry Smith PetscInt len=0; 31760ac07820SSatish Balay 3177d64ed03dSBarry Smith PetscFunctionBegin; 3178f4259b30SLisandro Dalcin *newmat = NULL; 31799566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 31809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 31819566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 31827fff6886SHong Zhang 3183d5f3da31SBarry Smith mat->factortype = matin->factortype; 3184273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31850ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31867fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31877fff6886SHong Zhang 3188273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3189d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31900ac07820SSatish Balay a->bs2 = oldmat->bs2; 31910ac07820SSatish Balay a->mbs = oldmat->mbs; 31920ac07820SSatish Balay a->nbs = oldmat->nbs; 31930ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31940ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31950ac07820SSatish Balay 31969566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 31979566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 3198899cda47SBarry Smith 31990ac07820SSatish Balay a->size = oldmat->size; 32000ac07820SSatish Balay a->rank = oldmat->rank; 3201aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3202aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3203f4259b30SLisandro Dalcin a->rowindices = NULL; 3204f4259b30SLisandro Dalcin a->rowvalues = NULL; 32050ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3206f4259b30SLisandro Dalcin a->barray = NULL; 3207899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3208899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3209899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3210899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32110ac07820SSatish Balay 3212133cdb44SSatish Balay /* hash table stuff */ 3213f4259b30SLisandro Dalcin a->ht = NULL; 3214f4259b30SLisandro Dalcin a->hd = NULL; 3215133cdb44SSatish Balay a->ht_size = 0; 3216133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3218133cdb44SSatish Balay a->ht_total_ct = 0; 3219133cdb44SSatish Balay a->ht_insert_ct = 0; 3220133cdb44SSatish Balay 32219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1)); 32220ac07820SSatish Balay if (oldmat->colmap) { 3223aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32249566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 322548e59246SSatish Balay #else 32269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs,&a->colmap)); 32279566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt))); 32289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs)); 322948e59246SSatish Balay #endif 3230f4259b30SLisandro Dalcin } else a->colmap = NULL; 32314beb1cfeSHong Zhang 32320ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 32339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len,&a->garray)); 32349566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 32359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 3236f4259b30SLisandro Dalcin } else a->garray = NULL; 32370ac07820SSatish Balay 32389566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash)); 32399566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 32409566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 32419566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 32429566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 32437fff6886SHong Zhang 32449566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 32459566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 32469566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 32479566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 32489566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 32490ac07820SSatish Balay *newmat = mat; 32503a40ed3dSBarry Smith PetscFunctionReturn(0); 32510ac07820SSatish Balay } 325257b952d6SSatish Balay 3253618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3254b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 3255b51a4376SLisandro Dalcin { 3256b51a4376SLisandro Dalcin PetscInt header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k; 3257b51a4376SLisandro Dalcin PetscInt *rowidxs,*colidxs,rs,cs,ce; 3258b51a4376SLisandro Dalcin PetscScalar *matvals; 3259b51a4376SLisandro Dalcin 3260b51a4376SLisandro Dalcin PetscFunctionBegin; 32619566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3262b51a4376SLisandro Dalcin 3263b51a4376SLisandro Dalcin /* read in matrix header */ 32649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT)); 32655f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 3266b51a4376SLisandro Dalcin M = header[1]; N = header[2]; nz = header[3]; 32675f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M); 32685f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N); 32695f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3270b51a4376SLisandro Dalcin 3271b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32729566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat,viewer)); 3273618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3274618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3275618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3276b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3277b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3278b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3281b51a4376SLisandro Dalcin 3282b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32839566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,&rows,&cols)); 32845f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols); 32859566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat,&bs)); 32869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,&n)); 32879566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap,&rs,NULL)); 32889566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap,&cs,&ce)); 3289b51a4376SLisandro Dalcin mbs = m/bs; nbs = n/bs; 3290b51a4376SLisandro Dalcin 3291b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1,&rowidxs)); 32939566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT)); 3294b51a4376SLisandro Dalcin rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i]; 32951c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer))); 32965f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT,nz,sum); 3297b51a4376SLisandro Dalcin 3298b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals)); 33009566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT)); 33019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR)); 3302b51a4376SLisandro Dalcin 3303b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3304b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3305b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3306618cc2edSLisandro Dalcin PetscBool sbaij,done; 3307b51a4376SLisandro Dalcin PetscInt *d_nnz,*o_nnz; 3308b51a4376SLisandro Dalcin 33099566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs,&bt)); 33109566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33119566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz)); 33129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij)); 3313b51a4376SLisandro Dalcin for (i=0; i<mbs; i++) { 33149566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs,bt)); 33159566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3316618cc2edSLisandro Dalcin for (k=0; k<bs; k++) { 3317618cc2edSLisandro Dalcin PetscInt row = bs*i + k; 3318618cc2edSLisandro Dalcin for (j=rowidxs[row]; j<rowidxs[row+1]; j++) { 3319618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3320618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3321618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3322618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++; 3323b51a4376SLisandro Dalcin } else { 33249566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht,col/bs,&done)); 3325b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3326b51a4376SLisandro Dalcin } 3327b51a4376SLisandro Dalcin } 3328618cc2edSLisandro Dalcin } 3329618cc2edSLisandro Dalcin } 3330618cc2edSLisandro Dalcin } 33319566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33329566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33339566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz)); 33349566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz)); 33359566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 3336b51a4376SLisandro Dalcin } 3337b51a4376SLisandro Dalcin 3338b51a4376SLisandro Dalcin /* store matrix values */ 3339b51a4376SLisandro Dalcin for (i=0; i<m; i++) { 3340b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1]; 33419566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES)); 3342b51a4376SLisandro Dalcin } 3343b51a4376SLisandro Dalcin 33449566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33459566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs,matvals)); 33469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY)); 33479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY)); 3348b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3349b51a4376SLisandro Dalcin } 3350b51a4376SLisandro Dalcin 3351b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer) 33524683f7a4SShri Abhyankar { 33537f489da9SVaclav Hapla PetscBool isbinary; 33544683f7a4SShri Abhyankar 33554683f7a4SShri Abhyankar PetscFunctionBegin; 33569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 33575f80ce2aSJacob Faibussowitsch PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 33589566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat,viewer)); 33594683f7a4SShri Abhyankar PetscFunctionReturn(0); 33604683f7a4SShri Abhyankar } 33614683f7a4SShri Abhyankar 3362133cdb44SSatish Balay /*@ 3363133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3364133cdb44SSatish Balay 3365133cdb44SSatish Balay Input Parameters: 3366a2b725a8SWilliam Gropp + mat - the matrix 3367a2b725a8SWilliam Gropp - fact - factor 3368133cdb44SSatish Balay 3369c5eb9154SBarry Smith Not Collective, each process can use a different factor 3370fee21e36SBarry Smith 33718c890885SBarry Smith Level: advanced 33728c890885SBarry Smith 3373133cdb44SSatish Balay Notes: 33748c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3375133cdb44SSatish Balay 3376db781477SPatrick Sanan .seealso: `MatSetOption()` 3377133cdb44SSatish Balay @*/ 33787087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3379133cdb44SSatish Balay { 33805bf65638SKris Buschelman PetscFunctionBegin; 3381cac4c232SBarry Smith PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact)); 33825bf65638SKris Buschelman PetscFunctionReturn(0); 33835bf65638SKris Buschelman } 33845bf65638SKris Buschelman 33857087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 33865bf65638SKris Buschelman { 338725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3388133cdb44SSatish Balay 3389133cdb44SSatish Balay PetscFunctionBegin; 3390133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3391133cdb44SSatish Balay baij->ht_fact = fact; 3392133cdb44SSatish Balay PetscFunctionReturn(0); 3393133cdb44SSatish Balay } 3394f2a5309cSSatish Balay 33959230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3396f2a5309cSSatish Balay { 3397f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 3398ab4d48faSStefano Zampini PetscBool flg; 33995fd66863SKarl Rupp 3400f2a5309cSSatish Balay PetscFunctionBegin; 34019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg)); 34025f80ce2aSJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input"); 340321e72a00SBarry Smith if (Ad) *Ad = a->A; 340421e72a00SBarry Smith if (Ao) *Ao = a->B; 340521e72a00SBarry Smith if (colmap) *colmap = a->garray; 3406f2a5309cSSatish Balay PetscFunctionReturn(0); 3407f2a5309cSSatish Balay } 340885535b8eSBarry Smith 340985535b8eSBarry Smith /* 341085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 341185535b8eSBarry Smith */ 341285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 341385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 341485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 341585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 341685535b8eSBarry Smith #endif 341785535b8eSBarry Smith 341885535b8eSBarry Smith /*@C 341985535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 342085535b8eSBarry Smith 342185535b8eSBarry Smith Collective on Mat 342285535b8eSBarry Smith 342385535b8eSBarry Smith Input Parameters: 342485535b8eSBarry Smith + mat - the matrix 342585535b8eSBarry Smith . min - number of input rows 342685535b8eSBarry Smith . im - input rows 342785535b8eSBarry Smith . nin - number of input columns 342885535b8eSBarry Smith . in - input columns 342985535b8eSBarry Smith . v - numerical values input 343085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 343185535b8eSBarry Smith 343295452b02SPatrick Sanan Notes: 343395452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 343485535b8eSBarry Smith 343585535b8eSBarry Smith Level: advanced 343685535b8eSBarry Smith 3437db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()` 343885535b8eSBarry Smith @*/ 343985535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 344085535b8eSBarry Smith { 344185535b8eSBarry Smith /* convert input arguments to C version */ 344285535b8eSBarry Smith Mat mat = *matin; 344385535b8eSBarry Smith PetscInt m = *min, n = *nin; 344485535b8eSBarry Smith InsertMode addv = *addvin; 344585535b8eSBarry Smith 344685535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 344785535b8eSBarry Smith const MatScalar *value; 344885535b8eSBarry Smith MatScalar *barray = baij->barray; 3449ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 345085535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 345185535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3452d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 345385535b8eSBarry Smith 345485535b8eSBarry Smith PetscFunctionBegin; 345585535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 345626fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34575f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 34585f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 345985535b8eSBarry Smith if (mat->assembled) { 346085535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 346185535b8eSBarry Smith mat->assembled = PETSC_FALSE; 346285535b8eSBarry Smith } 34639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues,mat,0,0,0)); 346485535b8eSBarry Smith 346585535b8eSBarry Smith if (!barray) { 34669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 346785535b8eSBarry Smith baij->barray = barray; 346885535b8eSBarry Smith } 346985535b8eSBarry Smith 347026fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 347126fbe8dcSKarl Rupp else stepval = (m-1)*bs; 347226fbe8dcSKarl Rupp 347385535b8eSBarry Smith for (i=0; i<m; i++) { 347485535b8eSBarry Smith if (im[i] < 0) continue; 34756bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 347685535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 347785535b8eSBarry Smith row = im[i] - rstart; 347885535b8eSBarry Smith for (j=0; j<n; j++) { 347985535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 348085535b8eSBarry Smith if ((roworiented) && (n == 1)) { 348185535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 348285535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 348385535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 348485535b8eSBarry Smith } else { /* Here a copy is required */ 348585535b8eSBarry Smith if (roworiented) { 348685535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 348785535b8eSBarry Smith } else { 348885535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 348985535b8eSBarry Smith } 349085535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 349185535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 349285535b8eSBarry Smith *barray++ = *value++; 349385535b8eSBarry Smith } 349485535b8eSBarry Smith } 349585535b8eSBarry Smith barray -=bs2; 349685535b8eSBarry Smith } 349785535b8eSBarry Smith 349885535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 349985535b8eSBarry Smith col = in[j] - cstart; 35009566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 350126fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 35026bdcaf15SBarry Smith else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 350385535b8eSBarry Smith else { 350485535b8eSBarry Smith if (mat->was_assembled) { 350585535b8eSBarry Smith if (!baij->colmap) { 35069566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 350785535b8eSBarry Smith } 350885535b8eSBarry Smith 350985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 351085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 351185535b8eSBarry Smith { PetscInt data; 35129566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 351308401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 351485535b8eSBarry Smith } 351585535b8eSBarry Smith #else 351608401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 351785535b8eSBarry Smith #endif 351885535b8eSBarry Smith #endif 351985535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35209566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 352185535b8eSBarry Smith col = (col - 1)/bs; 352285535b8eSBarry Smith #else 352385535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 352485535b8eSBarry Smith #endif 352585535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 35269566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 352785535b8eSBarry Smith col = in[j]; 352885535b8eSBarry Smith } 352926fbe8dcSKarl Rupp } else col = in[j]; 35309566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 353185535b8eSBarry Smith } 353285535b8eSBarry Smith } 353385535b8eSBarry Smith } else { 353485535b8eSBarry Smith if (!baij->donotstash) { 353585535b8eSBarry Smith if (roworiented) { 35369566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 353785535b8eSBarry Smith } else { 35389566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 353985535b8eSBarry Smith } 354085535b8eSBarry Smith } 354185535b8eSBarry Smith } 354285535b8eSBarry Smith } 354385535b8eSBarry Smith 354485535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues,mat,0,0,0)); 354685535b8eSBarry Smith PetscFunctionReturn(0); 354785535b8eSBarry Smith } 3548dfb205c3SBarry Smith 3549dfb205c3SBarry Smith /*@ 3550483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3551dfb205c3SBarry Smith CSR format the local rows. 3552dfb205c3SBarry Smith 3553d083f849SBarry Smith Collective 3554dfb205c3SBarry Smith 3555dfb205c3SBarry Smith Input Parameters: 3556dfb205c3SBarry Smith + comm - MPI communicator 3557dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3558dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3559dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3560dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3561dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3562dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3563dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3564483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3565dfb205c3SBarry Smith . j - column indices 3566dfb205c3SBarry Smith - a - matrix values 3567dfb205c3SBarry Smith 3568dfb205c3SBarry Smith Output Parameter: 3569dfb205c3SBarry Smith . mat - the matrix 3570dfb205c3SBarry Smith 3571dfb205c3SBarry Smith Level: intermediate 3572dfb205c3SBarry Smith 3573dfb205c3SBarry Smith Notes: 3574dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3575dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3576dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3577dfb205c3SBarry Smith 35783adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35793adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35803adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35813adadaf3SJed Brown with column-major ordering within blocks. 35823adadaf3SJed Brown 3583dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3584dfb205c3SBarry Smith 3585db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3586db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3587dfb205c3SBarry Smith @*/ 35887087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3589dfb205c3SBarry Smith { 3590dfb205c3SBarry Smith PetscFunctionBegin; 35915f80ce2aSJacob Faibussowitsch PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 35925f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,mat)); 35949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat,m,n,M,N)); 35959566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat,MATMPIBAIJ)); 35969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat,bs)); 35979566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35989566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE)); 35999566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a)); 36009566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE)); 3601dfb205c3SBarry Smith PetscFunctionReturn(0); 3602dfb205c3SBarry Smith } 3603e561ad89SHong Zhang 3604bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3605e561ad89SHong Zhang { 3606bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 3607bd153df0SHong Zhang PetscInt *indx; 3608bd153df0SHong Zhang PetscScalar *values; 3609e561ad89SHong Zhang 3610e561ad89SHong Zhang PetscFunctionBegin; 36119566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 3612bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3613bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 36142c6ba4edSHong Zhang PetscInt *dnz,*onz,mbs,Nbs,nbs; 3615bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 361677f764caSHong Zhang PetscMPIInt rank,size; 3617e561ad89SHong Zhang 36189566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 3619bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 3620bd153df0SHong Zhang if (n == PETSC_DECIDE) { 36219566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N)); 3622bd153df0SHong Zhang } 3623da91a574SPierre Jolivet nbs = n/cbs; 3624e561ad89SHong Zhang 36259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax,&bindx)); 3626d0609cedSBarry Smith MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */ 362777f764caSHong Zhang 36289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 36299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&size)); 363077f764caSHong Zhang if (rank == size-1) { 363177f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36325f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs); 363377f764caSHong Zhang } 363477f764caSHong Zhang 3635d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3636bd153df0SHong Zhang for (i=0; i<mbs; i++) { 36379566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */ 3638647a6520SHong Zhang nnz = nnz/bs; 3639647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 36409566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz)); 36419566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); 3642e561ad89SHong Zhang } 36439566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3644e561ad89SHong Zhang 36459566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,outmat)); 36469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE)); 36479566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat,bs,cbs)); 36489566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat,MATBAIJ)); 36499566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz)); 36509566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz)); 3651d0609cedSBarry Smith MatPreallocateEnd(dnz,onz); 36529566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 3653e561ad89SHong Zhang } 3654e561ad89SHong Zhang 3655bd153df0SHong Zhang /* numeric phase */ 36569566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 36579566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL)); 3658e561ad89SHong Zhang 3659e561ad89SHong Zhang for (i=0; i<m; i++) { 36609566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values)); 3661e561ad89SHong Zhang Ii = i + rstart; 36629566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES)); 36639566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values)); 3664e561ad89SHong Zhang } 36659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY)); 36669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY)); 3667e561ad89SHong Zhang PetscFunctionReturn(0); 3668e561ad89SHong Zhang } 3669