1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 12d71ae5a4SJacob Faibussowitsch { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 144e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 154e879edeSHong Zhang PetscScalar *va, *vv; 164e879edeSHong Zhang Vec vB, vA; 174e879edeSHong Zhang const PetscScalar *vb; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 209566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 219566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 224e879edeSHong Zhang 239566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 24985db425SBarry Smith if (idx) { 254e879edeSHong Zhang for (i = 0; i < m; i++) { 2626fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2726fbe8dcSKarl Rupp } 28985db425SBarry Smith } 297843d17aSBarry Smith 309566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 329566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 337843d17aSBarry Smith 349566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 364e879edeSHong Zhang for (i = 0; i < m; i++) { 3726fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 384e879edeSHong Zhang vv[i] = vb[i]; 394e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 404e879edeSHong Zhang } else { 414e879edeSHong Zhang vv[i] = va[i]; 429371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 4326fbe8dcSKarl Rupp } 447843d17aSBarry Smith } 459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 489566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 517843d17aSBarry Smith PetscFunctionReturn(0); 527843d17aSBarry Smith } 537843d17aSBarry Smith 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 55d71ae5a4SJacob Faibussowitsch { 567fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 577fc3c18eSBarry Smith 587fc3c18eSBarry Smith PetscFunctionBegin; 599566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 609566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 617fc3c18eSBarry Smith PetscFunctionReturn(0); 627fc3c18eSBarry Smith } 637fc3c18eSBarry Smith 64d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 65d71ae5a4SJacob Faibussowitsch { 667fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 677fc3c18eSBarry Smith 687fc3c18eSBarry Smith PetscFunctionBegin; 699566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 709566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 717fc3c18eSBarry Smith PetscFunctionReturn(0); 727fc3c18eSBarry Smith } 737fc3c18eSBarry Smith 74537820f0SBarry Smith /* 75537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7657b952d6SSatish Balay number to the local number in the off-diagonal part of the local 77e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7857b952d6SSatish Balay length of colmap equals the global matrix length. 7957b952d6SSatish Balay */ 80d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 81d71ae5a4SJacob Faibussowitsch { 8257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 8357b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 84d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 8557b952d6SSatish Balay 86d64ed03dSBarry Smith PetscFunctionBegin; 87aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 889566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(baij->nbs, baij->Nbs + 1, &baij->colmap)); 8948a46eb9SPierre Jolivet for (i = 0; i < nbs; i++) PetscCall(PetscTableAdd(baij->colmap, baij->garray[i] + 1, i * bs + 1, INSERT_VALUES)); 9048e59246SSatish Balay #else 919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 92928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 9348e59246SSatish Balay #endif 943a40ed3dSBarry Smith PetscFunctionReturn(0); 9557b952d6SSatish Balay } 9657b952d6SSatish Balay 97d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 9880c1aa95SSatish Balay { \ 9980c1aa95SSatish Balay brow = row / bs; \ 1009371c9d4SSatish Balay rp = aj + ai[brow]; \ 1019371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 1029371c9d4SSatish Balay rmax = aimax[brow]; \ 1039371c9d4SSatish Balay nrow = ailen[brow]; \ 10480c1aa95SSatish Balay bcol = col / bs; \ 1059371c9d4SSatish Balay ridx = row % bs; \ 1069371c9d4SSatish Balay cidx = col % bs; \ 1079371c9d4SSatish Balay low = 0; \ 1089371c9d4SSatish Balay high = nrow; \ 109ab26458aSBarry Smith while (high - low > 3) { \ 110ab26458aSBarry Smith t = (low + high) / 2; \ 111ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 112ab26458aSBarry Smith else low = t; \ 113ab26458aSBarry Smith } \ 114ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 11580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11780c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 118eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 119eada6651SSatish Balay else *bap = value; \ 120ac7a638eSSatish Balay goto a_noinsert; \ 12180c1aa95SSatish Balay } \ 12280c1aa95SSatish Balay } \ 12389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1245f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 125fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 12680c1aa95SSatish Balay N = nrow++ - 1; \ 12780c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1289566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1299566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1309566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 13180c1aa95SSatish Balay rp[_i] = bcol; \ 13280c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 133ac7a638eSSatish Balay a_noinsert:; \ 13480c1aa95SSatish Balay ailen[brow] = nrow; \ 13580c1aa95SSatish Balay } 13657b952d6SSatish Balay 137d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 138ac7a638eSSatish Balay { \ 139ac7a638eSSatish Balay brow = row / bs; \ 1409371c9d4SSatish Balay rp = bj + bi[brow]; \ 1419371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 1429371c9d4SSatish Balay rmax = bimax[brow]; \ 1439371c9d4SSatish Balay nrow = bilen[brow]; \ 144ac7a638eSSatish Balay bcol = col / bs; \ 1459371c9d4SSatish Balay ridx = row % bs; \ 1469371c9d4SSatish Balay cidx = col % bs; \ 1479371c9d4SSatish Balay low = 0; \ 1489371c9d4SSatish Balay high = nrow; \ 149ac7a638eSSatish Balay while (high - low > 3) { \ 150ac7a638eSSatish Balay t = (low + high) / 2; \ 151ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 152ac7a638eSSatish Balay else low = t; \ 153ac7a638eSSatish Balay } \ 154ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 155ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 156ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 157ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 158ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 159ac7a638eSSatish Balay else *bap = value; \ 160ac7a638eSSatish Balay goto b_noinsert; \ 161ac7a638eSSatish Balay } \ 162ac7a638eSSatish Balay } \ 16389280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 1645f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 165fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 166ac7a638eSSatish Balay N = nrow++ - 1; \ 167ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 1689566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1699566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1709566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 171ac7a638eSSatish Balay rp[_i] = bcol; \ 172ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 173ac7a638eSSatish Balay b_noinsert:; \ 174ac7a638eSSatish Balay bilen[brow] = nrow; \ 175ac7a638eSSatish Balay } 176ac7a638eSSatish Balay 177d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 178d71ae5a4SJacob Faibussowitsch { 17957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 18093fea6afSBarry Smith MatScalar value; 181ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 182b24ad042SBarry Smith PetscInt i, j, row, col; 183d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 184d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 185d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 18657b952d6SSatish Balay 187eada6651SSatish Balay /* Some Variables required in the macro */ 18880c1aa95SSatish Balay Mat A = baij->A; 18980c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 190b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 1913eda8832SBarry Smith MatScalar *aa = a->a; 192ac7a638eSSatish Balay 193ac7a638eSSatish Balay Mat B = baij->B; 194ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 195b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 1963eda8832SBarry Smith MatScalar *ba = b->a; 197ac7a638eSSatish Balay 198b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 199b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2003eda8832SBarry Smith MatScalar *ap, *bap; 20180c1aa95SSatish Balay 202d64ed03dSBarry Smith PetscFunctionBegin; 20357b952d6SSatish Balay for (i = 0; i < m; i++) { 2045ef9f2a5SBarry Smith if (im[i] < 0) continue; 2055f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 20657b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 20757b952d6SSatish Balay row = im[i] - rstart_orig; 20857b952d6SSatish Balay for (j = 0; j < n; j++) { 20957b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 21057b952d6SSatish Balay col = in[j] - cstart_orig; 211db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 212db4deed7SKarl Rupp else value = v[i + j * m]; 213d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 214f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 215f7d195e4SLawrence Mitchell continue; 216f7d195e4SLawrence Mitchell } else { 217f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 21857b952d6SSatish Balay if (mat->was_assembled) { 21948a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 220aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2219566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] / bs + 1, &col)); 222bba1ac68SSatish Balay col = col - 1; 22348e59246SSatish Balay #else 224bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 22548e59246SSatish Balay #endif 226c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 2279566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2288295de27SSatish Balay col = in[j]; 2299bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2309bf004c3SSatish Balay B = baij->B; 2319bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2329371c9d4SSatish Balay bimax = b->imax; 2339371c9d4SSatish Balay bi = b->i; 2349371c9d4SSatish Balay bilen = b->ilen; 2359371c9d4SSatish Balay bj = b->j; 2369bf004c3SSatish Balay ba = b->a; 237f7d195e4SLawrence Mitchell } else { 238f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 239f7d195e4SLawrence Mitchell col += in[j] % bs; 240f7d195e4SLawrence Mitchell } 2418295de27SSatish Balay } else col = in[j]; 242db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 243db4deed7SKarl Rupp else value = v[i + j * m]; 244d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2459566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 24657b952d6SSatish Balay } 24757b952d6SSatish Balay } 248d64ed03dSBarry Smith } else { 2495f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 25090f02eecSBarry Smith if (!baij->donotstash) { 2515080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 252ff2fd236SBarry Smith if (roworiented) { 2539566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 254ff2fd236SBarry Smith } else { 2559566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 25657b952d6SSatish Balay } 25757b952d6SSatish Balay } 25857b952d6SSatish Balay } 25990f02eecSBarry Smith } 2603a40ed3dSBarry Smith PetscFunctionReturn(0); 26157b952d6SSatish Balay } 26257b952d6SSatish Balay 263d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 264d71ae5a4SJacob Faibussowitsch { 265880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2668ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 267880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 2688ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 269880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 270880c6e6aSBarry Smith const PetscScalar *value = v; 271880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 272880c6e6aSBarry Smith 273880c6e6aSBarry Smith PetscFunctionBegin; 274880c6e6aSBarry Smith rp = aj + ai[row]; 275880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 276880c6e6aSBarry Smith rmax = imax[row]; 277880c6e6aSBarry Smith nrow = ailen[row]; 2788ab52850SBarry Smith value = v; 2798ab52850SBarry Smith low = 0; 2808ab52850SBarry Smith high = nrow; 281880c6e6aSBarry Smith while (high - low > 7) { 282880c6e6aSBarry Smith t = (low + high) / 2; 283880c6e6aSBarry Smith if (rp[t] > col) high = t; 284880c6e6aSBarry Smith else low = t; 285880c6e6aSBarry Smith } 286880c6e6aSBarry Smith for (i = low; i < high; i++) { 287880c6e6aSBarry Smith if (rp[i] > col) break; 288880c6e6aSBarry Smith if (rp[i] == col) { 289880c6e6aSBarry Smith bap = ap + bs2 * i; 290880c6e6aSBarry Smith if (roworiented) { 291880c6e6aSBarry Smith if (is == ADD_VALUES) { 2928ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 293ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 294880c6e6aSBarry Smith } 295880c6e6aSBarry Smith } else { 2968ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 297ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 298880c6e6aSBarry Smith } 299880c6e6aSBarry Smith } 300880c6e6aSBarry Smith } else { 301880c6e6aSBarry Smith if (is == ADD_VALUES) { 3028ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 303ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 304880c6e6aSBarry Smith bap += bs; 305880c6e6aSBarry Smith } 306880c6e6aSBarry Smith } else { 3078ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 308ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 309880c6e6aSBarry Smith bap += bs; 310880c6e6aSBarry Smith } 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith } 313880c6e6aSBarry Smith goto noinsert2; 314880c6e6aSBarry Smith } 315880c6e6aSBarry Smith } 316880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3175f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 318880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3199371c9d4SSatish Balay N = nrow++ - 1; 3209371c9d4SSatish Balay high++; 321880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3229566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3239566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 324880c6e6aSBarry Smith rp[i] = col; 325880c6e6aSBarry Smith bap = ap + bs2 * i; 326880c6e6aSBarry Smith if (roworiented) { 3278ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 328ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 329880c6e6aSBarry Smith } 330880c6e6aSBarry Smith } else { 3318ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 332ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith } 335880c6e6aSBarry Smith noinsert2:; 336880c6e6aSBarry Smith ailen[row] = nrow; 337880c6e6aSBarry Smith PetscFunctionReturn(0); 338880c6e6aSBarry Smith } 339880c6e6aSBarry Smith 3408ab52850SBarry Smith /* 3418ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3428ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3438ab52850SBarry Smith */ 344d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 345d71ae5a4SJacob Faibussowitsch { 346ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 347dd6ea824SBarry Smith const PetscScalar *value; 348f15d580aSBarry Smith MatScalar *barray = baij->barray; 349ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 350899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 351899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 352d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 353ab26458aSBarry Smith 354b16ae2b1SBarry Smith PetscFunctionBegin; 35530793edcSSatish Balay if (!barray) { 3569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 35782502324SSatish Balay baij->barray = barray; 35830793edcSSatish Balay } 35930793edcSSatish Balay 36026fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 36126fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 36226fbe8dcSKarl Rupp 363ab26458aSBarry Smith for (i = 0; i < m; i++) { 3645ef9f2a5SBarry Smith if (im[i] < 0) continue; 3656bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 366ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 367ab26458aSBarry Smith row = im[i] - rstart; 368ab26458aSBarry Smith for (j = 0; j < n; j++) { 36915b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 37015b57d14SSatish Balay if ((roworiented) && (n == 1)) { 371f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 37215b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 373f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 37415b57d14SSatish Balay } else { /* Here a copy is required */ 375ab26458aSBarry Smith if (roworiented) { 37653ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 377ab26458aSBarry Smith } else { 37853ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 379abef11f7SSatish Balay } 38053ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 38126fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 38253ef36baSBarry Smith barray += bs; 38347513183SBarry Smith } 38430793edcSSatish Balay barray -= bs2; 38515b57d14SSatish Balay } 386abef11f7SSatish Balay 387abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 388abef11f7SSatish Balay col = in[j] - cstart; 3899566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 390f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 391f7d195e4SLawrence Mitchell continue; 392f7d195e4SLawrence Mitchell } else { 393f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 394ab26458aSBarry Smith if (mat->was_assembled) { 39548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 396a5eb4965SSatish Balay 3972515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 398aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3999371c9d4SSatish Balay { 4009371c9d4SSatish Balay PetscInt data; 4019566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data)); 40208401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 403fa46199cSSatish Balay } 40448e59246SSatish Balay #else 40508401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 406a5eb4965SSatish Balay #endif 40748e59246SSatish Balay #endif 408aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4099566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col)); 410fa46199cSSatish Balay col = (col - 1) / bs; 41148e59246SSatish Balay #else 412a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 41348e59246SSatish Balay #endif 4140e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 4159566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 416ab26458aSBarry Smith col = in[j]; 4175f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 418db4deed7SKarl Rupp } else col = in[j]; 4199566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 420ab26458aSBarry Smith } 421ab26458aSBarry Smith } 422d64ed03dSBarry Smith } else { 4235f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 424ab26458aSBarry Smith if (!baij->donotstash) { 425ff2fd236SBarry Smith if (roworiented) { 4269566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 427ff2fd236SBarry Smith } else { 4289566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 429ff2fd236SBarry Smith } 430abef11f7SSatish Balay } 431ab26458aSBarry Smith } 432ab26458aSBarry Smith } 4333a40ed3dSBarry Smith PetscFunctionReturn(0); 434ab26458aSBarry Smith } 4356fa18ffdSBarry Smith 4360bdbc534SSatish Balay #define HASH_KEY 0.6180339887 437b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 438b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 439b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 440d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 441d71ae5a4SJacob Faibussowitsch { 4420bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 443ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 444b24ad042SBarry Smith PetscInt i, j, row, col; 445d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 446d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 447d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 448329f5518SBarry Smith PetscReal tmp; 4493eda8832SBarry Smith MatScalar **HD = baij->hd, value; 450b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4510bdbc534SSatish Balay 4520bdbc534SSatish Balay PetscFunctionBegin; 4530bdbc534SSatish Balay for (i = 0; i < m; i++) { 45476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 4555f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 4565f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 45776bd3646SJed Brown } 4580bdbc534SSatish Balay row = im[i]; 459c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4600bdbc534SSatish Balay for (j = 0; j < n; j++) { 4610bdbc534SSatish Balay col = in[j]; 462db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 463db4deed7SKarl Rupp else value = v[i + j * m]; 464b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 465c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 466c2760754SSatish Balay h1 = HASH(size, key, tmp); 4670bdbc534SSatish Balay 468c2760754SSatish Balay idx = h1; 46976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 470187ce0cbSSatish Balay insert_ct++; 471187ce0cbSSatish Balay total_ct++; 472187ce0cbSSatish Balay if (HT[idx] != key) { 4739371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 4749371c9d4SSatish Balay ; 475187ce0cbSSatish Balay if (idx == size) { 4769371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 4779371c9d4SSatish Balay ; 4785f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 479187ce0cbSSatish Balay } 480187ce0cbSSatish Balay } 48176bd3646SJed Brown } else if (HT[idx] != key) { 4829371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 4839371c9d4SSatish Balay ; 484c2760754SSatish Balay if (idx == size) { 4859371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 4869371c9d4SSatish Balay ; 4875f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 488c2760754SSatish Balay } 489c2760754SSatish Balay } 490c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 491c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 492c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 4930bdbc534SSatish Balay } 49426fbe8dcSKarl Rupp } else if (!baij->donotstash) { 495ff2fd236SBarry Smith if (roworiented) { 4969566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 497ff2fd236SBarry Smith } else { 4989566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 4990bdbc534SSatish Balay } 5000bdbc534SSatish Balay } 5010bdbc534SSatish Balay } 50276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 503abf3b562SBarry Smith baij->ht_total_ct += total_ct; 504abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 50576bd3646SJed Brown } 5060bdbc534SSatish Balay PetscFunctionReturn(0); 5070bdbc534SSatish Balay } 5080bdbc534SSatish Balay 509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 510d71ae5a4SJacob Faibussowitsch { 5110bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 512ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 513b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 514899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 515d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 516b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 517329f5518SBarry Smith PetscReal tmp; 5183eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 519dd6ea824SBarry Smith const PetscScalar *v_t, *value; 520b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5210bdbc534SSatish Balay 522d0a41580SSatish Balay PetscFunctionBegin; 52326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 52426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 52526fbe8dcSKarl Rupp 5260bdbc534SSatish Balay for (i = 0; i < m; i++) { 52776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5285f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 53076bd3646SJed Brown } 5310bdbc534SSatish Balay row = im[i]; 532ab715e2cSSatish Balay v_t = v + i * nbs2; 533c2760754SSatish Balay if (row >= rstart && row < rend) { 5340bdbc534SSatish Balay for (j = 0; j < n; j++) { 5350bdbc534SSatish Balay col = in[j]; 5360bdbc534SSatish Balay 5370bdbc534SSatish Balay /* Look up into the Hash Table */ 538c2760754SSatish Balay key = row * Nbs + col + 1; 539c2760754SSatish Balay h1 = HASH(size, key, tmp); 5400bdbc534SSatish Balay 541c2760754SSatish Balay idx = h1; 54276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 543187ce0cbSSatish Balay total_ct++; 544187ce0cbSSatish Balay insert_ct++; 545187ce0cbSSatish Balay if (HT[idx] != key) { 5469371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5479371c9d4SSatish Balay ; 548187ce0cbSSatish Balay if (idx == size) { 5499371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5509371c9d4SSatish Balay ; 5515f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 552187ce0cbSSatish Balay } 553187ce0cbSSatish Balay } 55476bd3646SJed Brown } else if (HT[idx] != key) { 5559371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 5569371c9d4SSatish Balay ; 557c2760754SSatish Balay if (idx == size) { 5589371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 5599371c9d4SSatish Balay ; 5605f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 561c2760754SSatish Balay } 562c2760754SSatish Balay } 563c2760754SSatish Balay baij_a = HD[idx]; 5640bdbc534SSatish Balay if (roworiented) { 565c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 566187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 567187ce0cbSSatish Balay value = v_t; 568187ce0cbSSatish Balay v_t += bs; 569fef45726SSatish Balay if (addv == ADD_VALUES) { 570c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 571ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 572b4cc0f5aSSatish Balay } 573fef45726SSatish Balay } else { 574c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 575ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 576fef45726SSatish Balay } 577fef45726SSatish Balay } 5780bdbc534SSatish Balay } else { 5790bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 580fef45726SSatish Balay if (addv == ADD_VALUES) { 581b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 582ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 583fef45726SSatish Balay } 584fef45726SSatish Balay } else { 585fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 586ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 587b4cc0f5aSSatish Balay } 5880bdbc534SSatish Balay } 5890bdbc534SSatish Balay } 5900bdbc534SSatish Balay } 5910bdbc534SSatish Balay } else { 5920bdbc534SSatish Balay if (!baij->donotstash) { 5930bdbc534SSatish Balay if (roworiented) { 5949566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5950bdbc534SSatish Balay } else { 5969566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5970bdbc534SSatish Balay } 5980bdbc534SSatish Balay } 5990bdbc534SSatish Balay } 6000bdbc534SSatish Balay } 60176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 602abf3b562SBarry Smith baij->ht_total_ct += total_ct; 603abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 60476bd3646SJed Brown } 6050bdbc534SSatish Balay PetscFunctionReturn(0); 6060bdbc534SSatish Balay } 607133cdb44SSatish Balay 608d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 609d71ae5a4SJacob Faibussowitsch { 610d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 611d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 612d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 613d6de1c52SSatish Balay 614133cdb44SSatish Balay PetscFunctionBegin; 615d6de1c52SSatish Balay for (i = 0; i < m; i++) { 61654c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 61754c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 618d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 619d6de1c52SSatish Balay row = idxm[i] - bsrstart; 620d6de1c52SSatish Balay for (j = 0; j < n; j++) { 62154c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 62254c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 623d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 624d6de1c52SSatish Balay col = idxn[j] - bscstart; 6259566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 626d64ed03dSBarry Smith } else { 62748a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 628aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6299566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, idxn[j] / bs + 1, &data)); 630fa46199cSSatish Balay data--; 63148e59246SSatish Balay #else 63248e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 63348e59246SSatish Balay #endif 63448e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 635d9d09a02SSatish Balay else { 63648e59246SSatish Balay col = data + idxn[j] % bs; 6379566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 638d6de1c52SSatish Balay } 639d6de1c52SSatish Balay } 640d6de1c52SSatish Balay } 641f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 642d6de1c52SSatish Balay } 6433a40ed3dSBarry Smith PetscFunctionReturn(0); 644d6de1c52SSatish Balay } 645d6de1c52SSatish Balay 646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 647d71ae5a4SJacob Faibussowitsch { 648d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 649d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 650d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 651329f5518SBarry Smith PetscReal sum = 0.0; 6523eda8832SBarry Smith MatScalar *v; 653d6de1c52SSatish Balay 654d64ed03dSBarry Smith PetscFunctionBegin; 655d6de1c52SSatish Balay if (baij->size == 1) { 6569566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 657d6de1c52SSatish Balay } else { 658d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 659d6de1c52SSatish Balay v = amat->a; 6608a62d963SHong Zhang nz = amat->nz * bs2; 6618a62d963SHong Zhang for (i = 0; i < nz; i++) { 6629371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 6639371c9d4SSatish Balay v++; 664d6de1c52SSatish Balay } 665d6de1c52SSatish Balay v = bmat->a; 6668a62d963SHong Zhang nz = bmat->nz * bs2; 6678a62d963SHong Zhang for (i = 0; i < nz; i++) { 6689371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 6699371c9d4SSatish Balay v++; 670d6de1c52SSatish Balay } 6711c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 6728f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6738a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6748a62d963SHong Zhang PetscReal *tmp, *tmp2; 675899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 6769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 6779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 6789371c9d4SSatish Balay v = amat->a; 6799371c9d4SSatish Balay jj = amat->j; 6808a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 6818a62d963SHong Zhang for (j = 0; j < bs; j++) { 6828a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 6838a62d963SHong Zhang for (row = 0; row < bs; row++) { 6849371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 6859371c9d4SSatish Balay v++; 6868a62d963SHong Zhang } 6878a62d963SHong Zhang } 6888a62d963SHong Zhang jj++; 6898a62d963SHong Zhang } 6909371c9d4SSatish Balay v = bmat->a; 6919371c9d4SSatish Balay jj = bmat->j; 6928a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 6938a62d963SHong Zhang for (j = 0; j < bs; j++) { 6948a62d963SHong Zhang col = bs * garray[*jj] + j; 6958a62d963SHong Zhang for (row = 0; row < bs; row++) { 6969371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 6979371c9d4SSatish Balay v++; 6988a62d963SHong Zhang } 6998a62d963SHong Zhang } 7008a62d963SHong Zhang jj++; 7018a62d963SHong Zhang } 7021c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7038a62d963SHong Zhang *nrm = 0.0; 704d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7058a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7068a62d963SHong Zhang } 7079566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7098a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 710577dd1f9SKris Buschelman PetscReal *sums; 7119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7128a62d963SHong Zhang sum = 0.0; 7138a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7148a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7158a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7168a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7178a62d963SHong Zhang for (i = 0; i < nz; i++) { 7188a62d963SHong Zhang for (col = 0; col < bs; col++) { 7198a62d963SHong Zhang for (row = 0; row < bs; row++) { 7209371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7219371c9d4SSatish Balay v++; 7228a62d963SHong Zhang } 7238a62d963SHong Zhang } 7248a62d963SHong Zhang } 7258a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7268a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7278a62d963SHong Zhang for (i = 0; i < nz; i++) { 7288a62d963SHong Zhang for (col = 0; col < bs; col++) { 7298a62d963SHong Zhang for (row = 0; row < bs; row++) { 7309371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7319371c9d4SSatish Balay v++; 7328a62d963SHong Zhang } 7338a62d963SHong Zhang } 7348a62d963SHong Zhang } 7358a62d963SHong Zhang for (row = 0; row < bs; row++) { 7368a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7378a62d963SHong Zhang } 7388a62d963SHong Zhang } 7391c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7409566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 741ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 742d64ed03dSBarry Smith } 7433a40ed3dSBarry Smith PetscFunctionReturn(0); 744d6de1c52SSatish Balay } 74557b952d6SSatish Balay 746fef45726SSatish Balay /* 747fef45726SSatish Balay Creates the hash table, and sets the table 748fef45726SSatish Balay This table is created only once. 749fef45726SSatish Balay If new entried need to be added to the matrix 750fef45726SSatish Balay then the hash table has to be destroyed and 751fef45726SSatish Balay recreated. 752fef45726SSatish Balay */ 753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 754d71ae5a4SJacob Faibussowitsch { 755596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 756596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 757596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 758b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 759fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 760899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 761b24ad042SBarry Smith PetscInt *HT, key; 7623eda8832SBarry Smith MatScalar **HD; 763329f5518SBarry Smith PetscReal tmp; 7646cf91177SBarry Smith #if defined(PETSC_USE_INFO) 765b24ad042SBarry Smith PetscInt ct = 0, max = 0; 7664a15367fSSatish Balay #endif 767fef45726SSatish Balay 768d64ed03dSBarry Smith PetscFunctionBegin; 769fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 770fef45726SSatish Balay 771fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 772fca92195SBarry Smith ht_size = baij->ht_size; 7730bdbc534SSatish Balay 774fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7759566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 776b9e4cc15SSatish Balay HD = baij->hd; 777a07cd24cSSatish Balay HT = baij->ht; 778b9e4cc15SSatish Balay 779596b8d2eSBarry Smith /* Loop Over A */ 7800bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 781596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 7820bdbc534SSatish Balay row = i + rstart; 7830bdbc534SSatish Balay col = aj[j] + cstart; 784596b8d2eSBarry Smith 785187ce0cbSSatish Balay key = row * Nbs + col + 1; 786fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 787fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 788fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 789fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 790fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 791596b8d2eSBarry Smith break; 7926cf91177SBarry Smith #if defined(PETSC_USE_INFO) 793187ce0cbSSatish Balay } else { 794187ce0cbSSatish Balay ct++; 795187ce0cbSSatish Balay #endif 796596b8d2eSBarry Smith } 797187ce0cbSSatish Balay } 7986cf91177SBarry Smith #if defined(PETSC_USE_INFO) 799187ce0cbSSatish Balay if (k > max) max = k; 800187ce0cbSSatish Balay #endif 801596b8d2eSBarry Smith } 802596b8d2eSBarry Smith } 803596b8d2eSBarry Smith /* Loop Over B */ 8040bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 805596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8060bdbc534SSatish Balay row = i + rstart; 8070bdbc534SSatish Balay col = garray[bj[j]]; 808187ce0cbSSatish Balay key = row * Nbs + col + 1; 809fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 810fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 811fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 812fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 813fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 814596b8d2eSBarry Smith break; 8156cf91177SBarry Smith #if defined(PETSC_USE_INFO) 816187ce0cbSSatish Balay } else { 817187ce0cbSSatish Balay ct++; 818187ce0cbSSatish Balay #endif 819596b8d2eSBarry Smith } 820187ce0cbSSatish Balay } 8216cf91177SBarry Smith #if defined(PETSC_USE_INFO) 822187ce0cbSSatish Balay if (k > max) max = k; 823187ce0cbSSatish Balay #endif 824596b8d2eSBarry Smith } 825596b8d2eSBarry Smith } 826596b8d2eSBarry Smith 827596b8d2eSBarry Smith /* Print Summary */ 8286cf91177SBarry Smith #if defined(PETSC_USE_INFO) 829fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 83026fbe8dcSKarl Rupp if (HT[i]) j++; 831c38d4ed2SBarry Smith } 8329566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 833187ce0cbSSatish Balay #endif 8343a40ed3dSBarry Smith PetscFunctionReturn(0); 835596b8d2eSBarry Smith } 83657b952d6SSatish Balay 837d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 838d71ae5a4SJacob Faibussowitsch { 839bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 840b24ad042SBarry Smith PetscInt nstash, reallocs; 841bbb85fb3SSatish Balay 842bbb85fb3SSatish Balay PetscFunctionBegin; 84326fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 844bbb85fb3SSatish Balay 8459566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8469566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8479566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8489566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8499566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8509566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 851bbb85fb3SSatish Balay PetscFunctionReturn(0); 852bbb85fb3SSatish Balay } 853bbb85fb3SSatish Balay 854d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 855d71ae5a4SJacob Faibussowitsch { 856bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 85791c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 858b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 859e44c0bd4SBarry Smith PetscInt *row, *col; 860ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 8613eda8832SBarry Smith MatScalar *val; 862b24ad042SBarry Smith PetscMPIInt n; 863bbb85fb3SSatish Balay 864bbb85fb3SSatish Balay PetscFunctionBegin; 8655fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8664cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 867a2d1c673SSatish Balay while (1) { 8689566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 869a2d1c673SSatish Balay if (!flg) break; 870a2d1c673SSatish Balay 871bbb85fb3SSatish Balay for (i = 0; i < n;) { 872bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87326fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 87426fbe8dcSKarl Rupp if (row[j] != rstart) break; 87526fbe8dcSKarl Rupp } 876bbb85fb3SSatish Balay if (j < n) ncols = j - i; 877bbb85fb3SSatish Balay else ncols = n - i; 878bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8799566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 880bbb85fb3SSatish Balay i = j; 881bbb85fb3SSatish Balay } 882bbb85fb3SSatish Balay } 8839566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 884a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 885a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 886a2d1c673SSatish Balay restore the original flags */ 887a2d1c673SSatish Balay r1 = baij->roworiented; 888a2d1c673SSatish Balay r2 = a->roworiented; 88991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 89026fbe8dcSKarl Rupp 8917c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8927c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89326fbe8dcSKarl Rupp 89491c97fd4SSatish Balay (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 895a2d1c673SSatish Balay while (1) { 8969566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 897a2d1c673SSatish Balay if (!flg) break; 898a2d1c673SSatish Balay 899a2d1c673SSatish Balay for (i = 0; i < n;) { 900a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 90126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 90226fbe8dcSKarl Rupp if (row[j] != rstart) break; 90326fbe8dcSKarl Rupp } 904a2d1c673SSatish Balay if (j < n) ncols = j - i; 905a2d1c673SSatish Balay else ncols = n - i; 9069566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 907a2d1c673SSatish Balay i = j; 908a2d1c673SSatish Balay } 909a2d1c673SSatish Balay } 9109566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 91126fbe8dcSKarl Rupp 912a2d1c673SSatish Balay baij->roworiented = r1; 913a2d1c673SSatish Balay a->roworiented = r2; 91426fbe8dcSKarl Rupp 91591c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 916bbb85fb3SSatish Balay } 917bbb85fb3SSatish Balay 9189566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9199566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9226aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 923bbb85fb3SSatish Balay /* 924bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 925bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 926bbb85fb3SSatish Balay */ 927bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9285f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 92948a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 930bbb85fb3SSatish Balay } 931bbb85fb3SSatish Balay 93248a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 935bbb85fb3SSatish Balay 9366cf91177SBarry Smith #if defined(PETSC_USE_INFO) 937bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9389566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 93926fbe8dcSKarl Rupp 940bbb85fb3SSatish Balay baij->ht_total_ct = 0; 941bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 942bbb85fb3SSatish Balay } 943bbb85fb3SSatish Balay #endif 944bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9459566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 94626fbe8dcSKarl Rupp 947bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 948bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 949bbb85fb3SSatish Balay } 950bbb85fb3SSatish Balay 9519566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 95226fbe8dcSKarl Rupp 953f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9544f9cfa9eSBarry Smith 9554f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9564f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 957e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 9581c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 959e56f5c9eSBarry Smith } 960bbb85fb3SSatish Balay PetscFunctionReturn(0); 961bbb85fb3SSatish Balay } 96257b952d6SSatish Balay 9637da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 9649804daf3SBarry Smith #include <petscdraw.h> 965d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 966d71ae5a4SJacob Faibussowitsch { 96757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 9687da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 969d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 970ace3abfcSBarry Smith PetscBool iascii, isdraw; 971b0a32e0cSBarry Smith PetscViewer sviewer; 972f3ef73ceSBarry Smith PetscViewerFormat format; 97357b952d6SSatish Balay 974d64ed03dSBarry Smith PetscFunctionBegin; 9759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 97732077d6dSBarry Smith if (iascii) { 9789566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 979456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9804e220ebcSLois Curfman McInnes MatInfo info; 9819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9829566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9849371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9859371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9869566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9889566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9909566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9939566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9943a40ed3dSBarry Smith PetscFunctionReturn(0); 995fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9973a40ed3dSBarry Smith PetscFunctionReturn(0); 99804929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99904929863SHong Zhang PetscFunctionReturn(0); 100057b952d6SSatish Balay } 100157b952d6SSatish Balay } 100257b952d6SSatish Balay 10030f5bd95cSBarry Smith if (isdraw) { 1004b0a32e0cSBarry Smith PetscDraw draw; 1005ace3abfcSBarry Smith PetscBool isnull; 10069566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10079566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 100845f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 100957b952d6SSatish Balay } 101057b952d6SSatish Balay 10117da1fb6eSBarry Smith { 101257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101357b952d6SSatish Balay Mat A; 101457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1015d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10163eda8832SBarry Smith MatScalar *a; 10173e219373SBarry Smith const char *matname; 101857b952d6SSatish Balay 1019f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1020f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1022dd400576SPatrick Sanan if (rank == 0) { 10239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1024d64ed03dSBarry Smith } else { 10259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 102657b952d6SSatish Balay } 10279566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10289566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10299566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 103057b952d6SSatish Balay 103157b952d6SSatish Balay /* copy over the A part */ 103257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10339371c9d4SSatish Balay ai = Aloc->i; 10349371c9d4SSatish Balay aj = Aloc->j; 10359371c9d4SSatish Balay a = Aloc->a; 10369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 103757b952d6SSatish Balay 103857b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1039899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 104026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 104157b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1042899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 104357b952d6SSatish Balay for (k = 0; k < bs; k++) { 10449566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10459371c9d4SSatish Balay col++; 10469371c9d4SSatish Balay a += bs; 104757b952d6SSatish Balay } 104857b952d6SSatish Balay } 104957b952d6SSatish Balay } 105057b952d6SSatish Balay /* copy over the B part */ 105157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10529371c9d4SSatish Balay ai = Aloc->i; 10539371c9d4SSatish Balay aj = Aloc->j; 10549371c9d4SSatish Balay a = Aloc->a; 105557b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1056899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 105726fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 105857b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 105957b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 106057b952d6SSatish Balay for (k = 0; k < bs; k++) { 10619566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10629371c9d4SSatish Balay col++; 10639371c9d4SSatish Balay a += bs; 106457b952d6SSatish Balay } 106557b952d6SSatish Balay } 106657b952d6SSatish Balay } 10679566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 107055843e3eSBarry Smith /* 107155843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1072b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 107355843e3eSBarry Smith */ 10749566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1076dd400576SPatrick Sanan if (rank == 0) { 10779566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname)); 10789566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer)); 107957b952d6SSatish Balay } 10809566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10819566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 108357b952d6SSatish Balay } 10843a40ed3dSBarry Smith PetscFunctionReturn(0); 108557b952d6SSatish Balay } 108657b952d6SSatish Balay 1087618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1088d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1089d71ae5a4SJacob Faibussowitsch { 1090b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1091b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1092b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1093b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1094b51a4376SLisandro Dalcin PetscInt header[4], M, N, m, rs, cs, bs, nz, cnt, i, j, ja, jb, k, l; 1095b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1096b51a4376SLisandro Dalcin PetscScalar *matvals; 1097660746e0SBarry Smith 1098660746e0SBarry Smith PetscFunctionBegin; 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1100b51a4376SLisandro Dalcin 1101b51a4376SLisandro Dalcin M = mat->rmap->N; 1102b51a4376SLisandro Dalcin N = mat->cmap->N; 1103b51a4376SLisandro Dalcin m = mat->rmap->n; 1104b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1105b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1106b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1107b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1108b51a4376SLisandro Dalcin 1109b51a4376SLisandro Dalcin /* write matrix header */ 1110660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11119371c9d4SSatish Balay header[1] = M; 11129371c9d4SSatish Balay header[2] = N; 11139371c9d4SSatish Balay header[3] = nz; 11149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nz, &header[3], 1, MPIU_INT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 11159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1116660746e0SBarry Smith 1117b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1119b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11209371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1123660746e0SBarry Smith 1124b51a4376SLisandro Dalcin /* fill in and store column indices */ 11259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1126b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1127b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1128b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1129b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11309371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1131660746e0SBarry Smith } 1132b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11339371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1134b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11359371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1136660746e0SBarry Smith } 1137660746e0SBarry Smith } 11385f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz); 11399566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11409566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1141660746e0SBarry Smith 1142b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1144b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1145b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1146b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1147b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11489371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1149660746e0SBarry Smith } 1150b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11519371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1152b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11539371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1154660746e0SBarry Smith } 1155b51a4376SLisandro Dalcin } 11569566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 11579566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1158660746e0SBarry Smith 1159b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 11609566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 1161660746e0SBarry Smith PetscFunctionReturn(0); 1162660746e0SBarry Smith } 1163660746e0SBarry Smith 1164d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1165d71ae5a4SJacob Faibussowitsch { 1166ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 116757b952d6SSatish Balay 1168d64ed03dSBarry Smith PetscFunctionBegin; 11699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 11709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 11719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 11729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1173660746e0SBarry Smith if (iascii || isdraw || issocket) { 11749566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 11751baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 11763a40ed3dSBarry Smith PetscFunctionReturn(0); 117757b952d6SSatish Balay } 117857b952d6SSatish Balay 1179d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 1180d71ae5a4SJacob Faibussowitsch { 118179bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 118279bdfe76SSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1185c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N); 118679bdfe76SSatish Balay #endif 11879566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 11889566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 11899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 11909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 1191aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 11929566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 119348e59246SSatish Balay #else 11949566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 119548e59246SSatish Balay #endif 11969566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 11979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 11989566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 11999566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 12009566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 12019566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->hd, baij->ht)); 12029566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 12039566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1204901853e0SKris Buschelman 12059566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 12069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 12079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 12089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 12099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 12132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 12142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 12157ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 12177ea3e4caSstefano_zampini #endif 12189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 12193a40ed3dSBarry Smith PetscFunctionReturn(0); 122079bdfe76SSatish Balay } 122179bdfe76SSatish Balay 1222d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1223d71ae5a4SJacob Faibussowitsch { 1224cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1225b24ad042SBarry Smith PetscInt nt; 1226cee3aa6bSSatish Balay 1227d64ed03dSBarry Smith PetscFunctionBegin; 12289566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12295f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12309566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 12315f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible parition of A and yy"); 12329566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12339566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12359566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12363a40ed3dSBarry Smith PetscFunctionReturn(0); 1237cee3aa6bSSatish Balay } 1238cee3aa6bSSatish Balay 1239d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1240d71ae5a4SJacob Faibussowitsch { 1241cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1242d64ed03dSBarry Smith 1243d64ed03dSBarry Smith PetscFunctionBegin; 12449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12459566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12479566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12483a40ed3dSBarry Smith PetscFunctionReturn(0); 1249cee3aa6bSSatish Balay } 1250cee3aa6bSSatish Balay 1251d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1252d71ae5a4SJacob Faibussowitsch { 1253cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1254cee3aa6bSSatish Balay 1255d64ed03dSBarry Smith PetscFunctionBegin; 1256cee3aa6bSSatish Balay /* do nondiagonal part */ 12579566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1258cee3aa6bSSatish Balay /* do local part */ 12599566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1260e4a140f6SJunchao Zhang /* add partial results together */ 12619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12633a40ed3dSBarry Smith PetscFunctionReturn(0); 1264cee3aa6bSSatish Balay } 1265cee3aa6bSSatish Balay 1266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1267d71ae5a4SJacob Faibussowitsch { 1268cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1269cee3aa6bSSatish Balay 1270d64ed03dSBarry Smith PetscFunctionBegin; 1271cee3aa6bSSatish Balay /* do nondiagonal part */ 12729566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1273cee3aa6bSSatish Balay /* do local part */ 12749566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1275e4a140f6SJunchao Zhang /* add partial results together */ 12769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12779566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12783a40ed3dSBarry Smith PetscFunctionReturn(0); 1279cee3aa6bSSatish Balay } 1280cee3aa6bSSatish Balay 1281cee3aa6bSSatish Balay /* 1282cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1283cee3aa6bSSatish Balay diagonal block 1284cee3aa6bSSatish Balay */ 1285d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1286d71ae5a4SJacob Faibussowitsch { 1287d64ed03dSBarry Smith PetscFunctionBegin; 12885f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12899566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12903a40ed3dSBarry Smith PetscFunctionReturn(0); 1291cee3aa6bSSatish Balay } 1292cee3aa6bSSatish Balay 1293d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1294d71ae5a4SJacob Faibussowitsch { 1295cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1296d64ed03dSBarry Smith 1297d64ed03dSBarry Smith PetscFunctionBegin; 12989566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12999566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13003a40ed3dSBarry Smith PetscFunctionReturn(0); 1301cee3aa6bSSatish Balay } 1302026e39d0SSatish Balay 1303d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1304d71ae5a4SJacob Faibussowitsch { 1305acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1307d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1308d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1309899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1310acdf5bf4SSatish Balay 1311d64ed03dSBarry Smith PetscFunctionBegin; 13125f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13135f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1314acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1315acdf5bf4SSatish Balay 1316acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1317acdf5bf4SSatish Balay /* 1318acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1319acdf5bf4SSatish Balay */ 1320acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1321b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1322bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1323acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1325acdf5bf4SSatish Balay } 13269566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1327acdf5bf4SSatish Balay } 1328d9d09a02SSatish Balay lrow = row - brstart; 1329acdf5bf4SSatish Balay 13309371c9d4SSatish Balay pvA = &vworkA; 13319371c9d4SSatish Balay pcA = &cworkA; 13329371c9d4SSatish Balay pvB = &vworkB; 13339371c9d4SSatish Balay pcB = &cworkB; 13349371c9d4SSatish Balay if (!v) { 13359371c9d4SSatish Balay pvA = NULL; 13369371c9d4SSatish Balay pvB = NULL; 13379371c9d4SSatish Balay } 13389371c9d4SSatish Balay if (!idx) { 13399371c9d4SSatish Balay pcA = NULL; 13409371c9d4SSatish Balay if (!v) pcB = NULL; 13419371c9d4SSatish Balay } 13429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13439566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1344acdf5bf4SSatish Balay nztot = nzA + nzB; 1345acdf5bf4SSatish Balay 1346acdf5bf4SSatish Balay cmap = mat->garray; 1347acdf5bf4SSatish Balay if (v || idx) { 1348acdf5bf4SSatish Balay if (nztot) { 1349acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1350b24ad042SBarry Smith PetscInt imark = -1; 1351acdf5bf4SSatish Balay if (v) { 1352acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1353acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1354d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1355acdf5bf4SSatish Balay else break; 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay imark = i; 1358acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1359acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1360acdf5bf4SSatish Balay } 1361acdf5bf4SSatish Balay if (idx) { 1362acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1363acdf5bf4SSatish Balay if (imark > -1) { 1364ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1365acdf5bf4SSatish Balay } else { 1366acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136726fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1368acdf5bf4SSatish Balay else break; 1369acdf5bf4SSatish Balay } 1370acdf5bf4SSatish Balay imark = i; 1371acdf5bf4SSatish Balay } 1372d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1373d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1374acdf5bf4SSatish Balay } 1375d64ed03dSBarry Smith } else { 1376f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1377f4259b30SLisandro Dalcin if (v) *v = NULL; 1378d212a18eSSatish Balay } 1379acdf5bf4SSatish Balay } 1380acdf5bf4SSatish Balay *nz = nztot; 13819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13829566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13833a40ed3dSBarry Smith PetscFunctionReturn(0); 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1387d71ae5a4SJacob Faibussowitsch { 1388acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1389d64ed03dSBarry Smith 1390d64ed03dSBarry Smith PetscFunctionBegin; 13915f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1392acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13933a40ed3dSBarry Smith PetscFunctionReturn(0); 1394acdf5bf4SSatish Balay } 1395acdf5bf4SSatish Balay 1396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1397d71ae5a4SJacob Faibussowitsch { 139858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1399d64ed03dSBarry Smith 1400d64ed03dSBarry Smith PetscFunctionBegin; 14019566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14033a40ed3dSBarry Smith PetscFunctionReturn(0); 140458667388SSatish Balay } 14050ac07820SSatish Balay 1406d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1407d71ae5a4SJacob Faibussowitsch { 14084e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14094e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14103966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14110ac07820SSatish Balay 1412d64ed03dSBarry Smith PetscFunctionBegin; 1413d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141426fbe8dcSKarl Rupp 14159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141626fbe8dcSKarl Rupp 14179371c9d4SSatish Balay isend[0] = info->nz_used; 14189371c9d4SSatish Balay isend[1] = info->nz_allocated; 14199371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14209371c9d4SSatish Balay isend[3] = info->memory; 14219371c9d4SSatish Balay isend[4] = info->mallocs; 142226fbe8dcSKarl Rupp 14239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142426fbe8dcSKarl Rupp 14259371c9d4SSatish Balay isend[0] += info->nz_used; 14269371c9d4SSatish Balay isend[1] += info->nz_allocated; 14279371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14289371c9d4SSatish Balay isend[3] += info->memory; 14299371c9d4SSatish Balay isend[4] += info->mallocs; 143026fbe8dcSKarl Rupp 14310ac07820SSatish Balay if (flag == MAT_LOCAL) { 14324e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14334e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14344e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14354e220ebcSLois Curfman McInnes info->memory = isend[3]; 14364e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14370ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14381c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 143926fbe8dcSKarl Rupp 14404e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14414e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14424e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14434e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14444e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14450ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14461c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144726fbe8dcSKarl Rupp 14484e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14494e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14504e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14514e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14524e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14544e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14554e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14564e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14573a40ed3dSBarry Smith PetscFunctionReturn(0); 14580ac07820SSatish Balay } 14590ac07820SSatish Balay 1460d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1461d71ae5a4SJacob Faibussowitsch { 146258667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146358667388SSatish Balay 1464d64ed03dSBarry Smith PetscFunctionBegin; 146512c028f9SKris Buschelman switch (op) { 1466512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1469a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147143674050SBarry Smith MatCheckPreallocated(A, 1); 14729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14739566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147412c028f9SKris Buschelman break; 147512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147643674050SBarry Smith MatCheckPreallocated(A, 1); 14774e0d8c25SBarry Smith a->roworiented = flg; 147826fbe8dcSKarl Rupp 14799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148112c028f9SKris Buschelman break; 14828c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1483d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1484d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1485d71ae5a4SJacob Faibussowitsch break; 1486d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1487d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1488d71ae5a4SJacob Faibussowitsch break; 148912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14904e0d8c25SBarry Smith a->ht_flag = flg; 1491abf3b562SBarry Smith a->ht_fact = 1.39; 149212c028f9SKris Buschelman break; 149377e54ba9SKris Buschelman case MAT_SYMMETRIC: 149477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14952188ac68SBarry Smith case MAT_HERMITIAN: 1496c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14972188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1498b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1499b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1500b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150177e54ba9SKris Buschelman break; 1502d71ae5a4SJacob Faibussowitsch default: 1503d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1504d64ed03dSBarry Smith } 15053a40ed3dSBarry Smith PetscFunctionReturn(0); 150658667388SSatish Balay } 150758667388SSatish Balay 1508d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1509d71ae5a4SJacob Faibussowitsch { 15100ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15110ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15120ac07820SSatish Balay Mat B; 1513d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1514d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15153eda8832SBarry Smith MatScalar *a; 15160ac07820SSatish Balay 1517d64ed03dSBarry Smith PetscFunctionBegin; 15187fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1519cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15209566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15229566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15232e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15249566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1525fc4dec0aSBarry Smith } else { 1526fc4dec0aSBarry Smith B = *matout; 1527fc4dec0aSBarry Smith } 15280ac07820SSatish Balay 15290ac07820SSatish Balay /* copy over the A part */ 15300ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15319371c9d4SSatish Balay ai = Aloc->i; 15329371c9d4SSatish Balay aj = Aloc->j; 15339371c9d4SSatish Balay a = Aloc->a; 15349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15350ac07820SSatish Balay 15360ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1537899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15390ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1540899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15410ac07820SSatish Balay for (k = 0; k < bs; k++) { 15429566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154326fbe8dcSKarl Rupp 15449371c9d4SSatish Balay col++; 15459371c9d4SSatish Balay a += bs; 15460ac07820SSatish Balay } 15470ac07820SSatish Balay } 15480ac07820SSatish Balay } 15490ac07820SSatish Balay /* copy over the B part */ 15500ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15519371c9d4SSatish Balay ai = Aloc->i; 15529371c9d4SSatish Balay aj = Aloc->j; 15539371c9d4SSatish Balay a = Aloc->a; 15540ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1555899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155626fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15570ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15580ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15590ac07820SSatish Balay for (k = 0; k < bs; k++) { 15609566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156126fbe8dcSKarl Rupp col++; 156226fbe8dcSKarl Rupp a += bs; 15630ac07820SSatish Balay } 15640ac07820SSatish Balay } 15650ac07820SSatish Balay } 15669566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15690ac07820SSatish Balay 1570cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157148a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15723a40ed3dSBarry Smith PetscFunctionReturn(0); 15730ac07820SSatish Balay } 15740e95ebc0SSatish Balay 1575d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1576d71ae5a4SJacob Faibussowitsch { 157736c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157836c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1579b24ad042SBarry Smith PetscInt s1, s2, s3; 15800e95ebc0SSatish Balay 1581d64ed03dSBarry Smith PetscFunctionBegin; 15829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158336c4a09eSSatish Balay if (rr) { 15849566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15855f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 158636c4a09eSSatish Balay /* Overlap communication with computation. */ 15879566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158836c4a09eSSatish Balay } 15890e95ebc0SSatish Balay if (ll) { 15909566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15915f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1592dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15930e95ebc0SSatish Balay } 159436c4a09eSSatish Balay /* scale the diagonal block */ 1595dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 159636c4a09eSSatish Balay 159736c4a09eSSatish Balay if (rr) { 159836c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15999566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1600dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160136c4a09eSSatish Balay } 16023a40ed3dSBarry Smith PetscFunctionReturn(0); 16030e95ebc0SSatish Balay } 16040e95ebc0SSatish Balay 1605d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1606d71ae5a4SJacob Faibussowitsch { 16070ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160865a92638SMatthew G. Knepley PetscInt *lrows; 16096e520ac8SStefano Zampini PetscInt r, len; 161094342113SStefano Zampini PetscBool cong; 16110ac07820SSatish Balay 1612d64ed03dSBarry Smith PetscFunctionBegin; 16136e520ac8SStefano Zampini /* get locally owned rows */ 16149566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 161597b48c8fSBarry Smith /* fix right hand side if needed */ 161697b48c8fSBarry Smith if (x && b) { 161765a92638SMatthew G. Knepley const PetscScalar *xx; 161865a92638SMatthew G. Knepley PetscScalar *bb; 161965a92638SMatthew G. Knepley 16209566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16219566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 162265a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162597b48c8fSBarry Smith } 162697b48c8fSBarry Smith 16270ac07820SSatish Balay /* actually zap the local rows */ 162872dacd9aSBarry Smith /* 162972dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1630a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163172dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 163272dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163372dacd9aSBarry Smith 163472dacd9aSBarry Smith */ 16359c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16369566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16379566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163894342113SStefano Zampini if ((diag != 0.0) && cong) { 16399566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1640f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16419566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 16425f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1643512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 164465a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 164565a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16469566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1647a07cd24cSSatish Balay } 16489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16509c957beeSSatish Balay } else { 16519566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1652a07cd24cSSatish Balay } 16539566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16544f9cfa9eSBarry Smith 16554f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16564f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 1657e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16581c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1659e56f5c9eSBarry Smith } 16603a40ed3dSBarry Smith PetscFunctionReturn(0); 16610ac07820SSatish Balay } 166272dacd9aSBarry Smith 1663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1664d71ae5a4SJacob Faibussowitsch { 16656f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1666131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1667131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16686f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16696f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16706f0a72daSMatthew G. Knepley PetscSF sf; 16716f0a72daSMatthew G. Knepley const PetscScalar *xx; 16726f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16736f0a72daSMatthew G. Knepley Vec xmask, lmask; 16746f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16756f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16766f0a72daSMatthew G. Knepley PetscScalar *aa; 16776f0a72daSMatthew G. Knepley 16786f0a72daSMatthew G. Knepley PetscFunctionBegin; 16796f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16816f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16836f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16846f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16855f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16865ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16879566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16885ba17502SJed Brown } 16896f0a72daSMatthew G. Knepley rrows[r].rank = p; 16906f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16916f0a72daSMatthew G. Knepley } 16929566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16939566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16946f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16959566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16969566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16979566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16986f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16999371c9d4SSatish Balay for (r = 0; r < n; ++r) 17009371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17016f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17029566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17036f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 17049566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17059566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17069566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17076f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17109566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17126f0a72daSMatthew G. Knepley if (x) { 17139566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17169566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17176f0a72daSMatthew G. Knepley } 17189566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17196f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17206f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17216f0a72daSMatthew G. Knepley row = lrows[i]; 17226f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 17236f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs); 17246f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17256f0a72daSMatthew G. Knepley aa[0] = 0.0; 17266f0a72daSMatthew G. Knepley aa += bs; 17276f0a72daSMatthew G. Knepley } 17286f0a72daSMatthew G. Knepley } 17296f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17306f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17316f0a72daSMatthew G. Knepley row = i / bs; 17326f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17336f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17346f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17356f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17366f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k; 173789ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17386f0a72daSMatthew G. Knepley aa[0] = 0.0; 17396f0a72daSMatthew G. Knepley } 17406f0a72daSMatthew G. Knepley } 17416f0a72daSMatthew G. Knepley } 17426f0a72daSMatthew G. Knepley } 17436f0a72daSMatthew G. Knepley if (x) { 17449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17466f0a72daSMatthew G. Knepley } 17479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17499566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17504f9cfa9eSBarry Smith 17514f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17524f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 17534f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17541c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17554f9cfa9eSBarry Smith } 17566f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17576f0a72daSMatthew G. Knepley } 17586f0a72daSMatthew G. Knepley 1759d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1760d71ae5a4SJacob Faibussowitsch { 1761bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1762d64ed03dSBarry Smith 1763d64ed03dSBarry Smith PetscFunctionBegin; 17649566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17653a40ed3dSBarry Smith PetscFunctionReturn(0); 1766bb5a7306SBarry Smith } 1767bb5a7306SBarry Smith 17686849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17690ac07820SSatish Balay 1770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1771d71ae5a4SJacob Faibussowitsch { 17727fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17737fc3c18eSBarry Smith Mat a, b, c, d; 1774ace3abfcSBarry Smith PetscBool flg; 17757fc3c18eSBarry Smith 17767fc3c18eSBarry Smith PetscFunctionBegin; 17779371c9d4SSatish Balay a = matA->A; 17789371c9d4SSatish Balay b = matA->B; 17799371c9d4SSatish Balay c = matB->A; 17809371c9d4SSatish Balay d = matB->B; 17817fc3c18eSBarry Smith 17829566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178348a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17841c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17857fc3c18eSBarry Smith PetscFunctionReturn(0); 17867fc3c18eSBarry Smith } 17877fc3c18eSBarry Smith 1788d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1789d71ae5a4SJacob Faibussowitsch { 17903c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17913c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17923c896bc6SHong Zhang 17933c896bc6SHong Zhang PetscFunctionBegin; 17943c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17953c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17969566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17973c896bc6SHong Zhang } else { 17989566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17999566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18003c896bc6SHong Zhang } 18019566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18023c896bc6SHong Zhang PetscFunctionReturn(0); 18033c896bc6SHong Zhang } 1804273d9f13SBarry Smith 1805d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1806d71ae5a4SJacob Faibussowitsch { 1807273d9f13SBarry Smith PetscFunctionBegin; 18089566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, A->rmap->bs, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 1809273d9f13SBarry Smith PetscFunctionReturn(0); 1810273d9f13SBarry Smith } 1811273d9f13SBarry Smith 1812d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1813d71ae5a4SJacob Faibussowitsch { 1814001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18154de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18164de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18174de5dceeSHong Zhang 18184de5dceeSHong Zhang PetscFunctionBegin; 18199566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18204de5dceeSHong Zhang PetscFunctionReturn(0); 18214de5dceeSHong Zhang } 18224de5dceeSHong Zhang 1823d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1824d71ae5a4SJacob Faibussowitsch { 18254fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18264fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18274fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1828b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18294fe895cdSHong Zhang 18304fe895cdSHong Zhang PetscFunctionBegin; 18314fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18324fe895cdSHong Zhang PetscScalar alpha = a; 18334fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18344fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18359566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1836792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18374fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18384fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18399566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1840792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18419566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1842ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18439566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18444fe895cdSHong Zhang } else { 18454de5dceeSHong Zhang Mat B; 18464de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18499566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18509566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18529566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18539566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18549566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18559566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18569566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18574de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18589566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18599566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18609566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18619566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18624fe895cdSHong Zhang } 18634fe895cdSHong Zhang PetscFunctionReturn(0); 18644fe895cdSHong Zhang } 18654fe895cdSHong Zhang 1866d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1867d71ae5a4SJacob Faibussowitsch { 18685f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18695f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18702726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18712726fb6dSPierre Jolivet 18729566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18739566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18745f80ce2aSJacob Faibussowitsch } 18752726fb6dSPierre Jolivet PetscFunctionReturn(0); 18762726fb6dSPierre Jolivet } 18772726fb6dSPierre Jolivet 1878d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1879d71ae5a4SJacob Faibussowitsch { 188099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188199cafbc1SBarry Smith 188299cafbc1SBarry Smith PetscFunctionBegin; 18839566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18849566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 188599cafbc1SBarry Smith PetscFunctionReturn(0); 188699cafbc1SBarry Smith } 188799cafbc1SBarry Smith 1888d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1889d71ae5a4SJacob Faibussowitsch { 189099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 189199cafbc1SBarry Smith 189299cafbc1SBarry Smith PetscFunctionBegin; 18939566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18949566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 189599cafbc1SBarry Smith PetscFunctionReturn(0); 189699cafbc1SBarry Smith } 189799cafbc1SBarry Smith 1898d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1899d71ae5a4SJacob Faibussowitsch { 19004aa3045dSJed Brown IS iscol_local; 19014aa3045dSJed Brown PetscInt csize; 19024aa3045dSJed Brown 19034aa3045dSJed Brown PetscFunctionBegin; 19049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1905b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19075f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1908b79d0421SJed Brown } else { 19099566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1910b79d0421SJed Brown } 19119566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 1912b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19139566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19149566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1915b79d0421SJed Brown } 19164aa3045dSJed Brown PetscFunctionReturn(0); 19174aa3045dSJed Brown } 191817df9f7cSHong Zhang 191982094794SBarry Smith /* 192082094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 192182094794SBarry Smith in local and then by concatenating the local matrices the end result. 19227dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19238f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192482094794SBarry Smith */ 1925d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 1926d71ae5a4SJacob Faibussowitsch { 192782094794SBarry Smith PetscMPIInt rank, size; 192882094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1929c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 193029dcf524SDmitry Karpeev Mat M, Mreuse; 193182094794SBarry Smith MatScalar *vwork, *aa; 1932ce94432eSBarry Smith MPI_Comm comm; 193329dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193482094794SBarry Smith Mat_SeqBAIJ *aij; 193582094794SBarry Smith 193682094794SBarry Smith PetscFunctionBegin; 19379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 194029dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 194129dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19429566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 19439566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194482094794SBarry Smith 194582094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19475f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 19489566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse)); 194982094794SBarry Smith } else { 19509566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse)); 195182094794SBarry Smith } 19529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195482094794SBarry Smith /* 195582094794SBarry Smith m - number of local rows 195682094794SBarry Smith n - number of columns (same on all processors) 195782094794SBarry Smith rstart - first row in new global matrix generated 195882094794SBarry Smith */ 19599566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19609566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 196182094794SBarry Smith m = m / bs; 196282094794SBarry Smith n = n / bs; 196382094794SBarry Smith 196482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196582094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 196682094794SBarry Smith ii = aij->i; 196782094794SBarry Smith jj = aij->j; 196882094794SBarry Smith 196982094794SBarry Smith /* 197082094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 197182094794SBarry Smith portions of the matrix in order to do correct preallocation 197282094794SBarry Smith */ 197382094794SBarry Smith 197482094794SBarry Smith /* first get start and end of "diagonal" columns */ 197582094794SBarry Smith if (csize == PETSC_DECIDE) { 19769566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197782094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197882094794SBarry Smith nlocal = m; 197982094794SBarry Smith } else { 198082094794SBarry Smith nlocal = n / size + ((n % size) > rank); 198182094794SBarry Smith } 198282094794SBarry Smith } else { 198382094794SBarry Smith nlocal = csize / bs; 198482094794SBarry Smith } 19859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 198682094794SBarry Smith rstart = rend - nlocal; 1987aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198882094794SBarry Smith 198982094794SBarry Smith /* next, compute all the lengths */ 19909566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 199182094794SBarry Smith for (i = 0; i < m; i++) { 199282094794SBarry Smith jend = ii[i + 1] - ii[i]; 199382094794SBarry Smith olen = 0; 199482094794SBarry Smith dlen = 0; 199582094794SBarry Smith for (j = 0; j < jend; j++) { 199682094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199782094794SBarry Smith else dlen++; 199882094794SBarry Smith jj++; 199982094794SBarry Smith } 200082094794SBarry Smith olens[i] = olen; 200182094794SBarry Smith dlens[i] = dlen; 200282094794SBarry Smith } 20039566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 20059566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 20069566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20079566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20089566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200982094794SBarry Smith } else { 201082094794SBarry Smith PetscInt ml, nl; 201182094794SBarry Smith 201282094794SBarry Smith M = *newmat; 20139566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20145f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20159566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 201682094794SBarry Smith /* 201782094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201882094794SBarry Smith rather than the slower MatSetValues(). 201982094794SBarry Smith */ 202082094794SBarry Smith M->was_assembled = PETSC_TRUE; 202182094794SBarry Smith M->assembled = PETSC_FALSE; 202282094794SBarry Smith } 20239566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202582094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 202682094794SBarry Smith ii = aij->i; 202782094794SBarry Smith jj = aij->j; 202882094794SBarry Smith aa = aij->a; 202982094794SBarry Smith for (i = 0; i < m; i++) { 203082094794SBarry Smith row = rstart / bs + i; 203182094794SBarry Smith nz = ii[i + 1] - ii[i]; 20329371c9d4SSatish Balay cwork = jj; 20339371c9d4SSatish Balay jj += nz; 20349371c9d4SSatish Balay vwork = aa; 20359371c9d4SSatish Balay aa += nz * bs * bs; 20369566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203782094794SBarry Smith } 203882094794SBarry Smith 20399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 204182094794SBarry Smith *newmat = M; 204282094794SBarry Smith 204382094794SBarry Smith /* save submatrix used in processor for next request */ 204482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20469566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204782094794SBarry Smith } 204882094794SBarry Smith PetscFunctionReturn(0); 204982094794SBarry Smith } 205082094794SBarry Smith 2051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2052d71ae5a4SJacob Faibussowitsch { 205382094794SBarry Smith MPI_Comm comm, pcomm; 2054a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205582094794SBarry Smith const PetscInt *rows; 2056dbf0e21dSBarry Smith PetscMPIInt size; 2057a0a83eb5SRémi Lacroix IS crowp, lcolp; 205882094794SBarry Smith 205982094794SBarry Smith PetscFunctionBegin; 20609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 206182094794SBarry Smith /* make a collective version of 'rowp' */ 20629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 206382094794SBarry Smith if (pcomm == comm) { 206482094794SBarry Smith crowp = rowp; 206582094794SBarry Smith } else { 20669566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20689566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20699566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 207082094794SBarry Smith } 20719566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2072a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2075dbf0e21dSBarry Smith if (size == 1) { 207682094794SBarry Smith lcolp = colp; 207782094794SBarry Smith } else { 20789566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207982094794SBarry Smith } 20809566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 208175f6568bSJed Brown /* now we just get the submatrix */ 20829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 20839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B)); 2084a0a83eb5SRémi Lacroix /* clean up */ 208548a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 208648a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 208782094794SBarry Smith PetscFunctionReturn(0); 208882094794SBarry Smith } 208982094794SBarry Smith 2090d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2091d71ae5a4SJacob Faibussowitsch { 20928c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20938c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20948c7482ecSBarry Smith 20958c7482ecSBarry Smith PetscFunctionBegin; 209626fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209726fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20988c7482ecSBarry Smith PetscFunctionReturn(0); 20998c7482ecSBarry Smith } 21008c7482ecSBarry Smith 2101d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2102d71ae5a4SJacob Faibussowitsch { 2103f6d58c54SBarry Smith Mat B; 2104f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2105f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2106f6d58c54SBarry Smith Mat_SeqAIJ *b; 2107f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2108f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2109f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2110f6d58c54SBarry Smith 2111f6d58c54SBarry Smith PetscFunctionBegin; 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2114f6d58c54SBarry Smith 2115f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2116f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2117f6d58c54SBarry Smith */ 21189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2119ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2121f6d58c54SBarry Smith displs = recvcounts + size; 2122f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2123f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2124f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2125f6d58c54SBarry Smith } 21269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 2127f6d58c54SBarry Smith /* --------------------------------------------------------------- 2128f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2129f6d58c54SBarry Smith */ 21309566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21329566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2134f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2135f6d58c54SBarry Smith 2136f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2137f6d58c54SBarry Smith Copy my part of matrix column indices over 2138f6d58c54SBarry Smith */ 2139f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2140f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2141f6d58c54SBarry Smith a_jsendbuf = ad->j; 2142f6d58c54SBarry Smith b_jsendbuf = bd->j; 2143f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2144f6d58c54SBarry Smith cnt = 0; 2145f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2146f6d58c54SBarry Smith /* put in lower diagonal portion */ 2147f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2148f6d58c54SBarry Smith while (m > 0) { 2149f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2150f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2151f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2152f6d58c54SBarry Smith m--; 2153f6d58c54SBarry Smith } 2154f6d58c54SBarry Smith 2155f6d58c54SBarry Smith /* put in diagonal portion */ 2156ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2157f6d58c54SBarry Smith 2158f6d58c54SBarry Smith /* put in upper diagonal portion */ 2159ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2160f6d58c54SBarry Smith } 21615f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2162f6d58c54SBarry Smith 2163f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2164f6d58c54SBarry Smith Gather all column indices to all processors 2165f6d58c54SBarry Smith */ 2166f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2167f6d58c54SBarry Smith recvcounts[i] = 0; 2168ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2169f6d58c54SBarry Smith } 2170f6d58c54SBarry Smith displs[0] = 0; 2171ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 2173f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2174f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2175f6d58c54SBarry Smith */ 2176f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2178f6d58c54SBarry Smith /* set the b->i indices */ 2179f6d58c54SBarry Smith b->i[0] = 0; 2180ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21819566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21829566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21839566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21849566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2185f6d58c54SBarry Smith 2186b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2187f6d58c54SBarry Smith *newmat = B; 2188f6d58c54SBarry Smith PetscFunctionReturn(0); 2189f6d58c54SBarry Smith } 2190f6d58c54SBarry Smith 2191d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2192d71ae5a4SJacob Faibussowitsch { 2193b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2194f4259b30SLisandro Dalcin Vec bb1 = NULL; 2195b1a666ecSBarry Smith 2196b1a666ecSBarry Smith PetscFunctionBegin; 2197b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21989566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2199b1a666ecSBarry Smith PetscFunctionReturn(0); 2200b1a666ecSBarry Smith } 2201b1a666ecSBarry Smith 220248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 22034e980039SJed Brown 2204b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2205b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22069566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2207b1a666ecSBarry Smith its--; 2208b1a666ecSBarry Smith } 2209b1a666ecSBarry Smith 2210b1a666ecSBarry Smith while (its--) { 22119566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22129566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2213b1a666ecSBarry Smith 2214b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22159566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22169566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2217b1a666ecSBarry Smith 2218b1a666ecSBarry Smith /* local sweep */ 22199566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2220b1a666ecSBarry Smith } 2221b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2222b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2224b1a666ecSBarry Smith its--; 2225b1a666ecSBarry Smith } 2226b1a666ecSBarry Smith while (its--) { 22279566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22289566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2229b1a666ecSBarry Smith 2230b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22319566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22329566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2233b1a666ecSBarry Smith 2234b1a666ecSBarry Smith /* local sweep */ 22359566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2236b1a666ecSBarry Smith } 2237b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2238b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2240b1a666ecSBarry Smith its--; 2241b1a666ecSBarry Smith } 2242b1a666ecSBarry Smith while (its--) { 22439566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22449566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2245b1a666ecSBarry Smith 2246b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22479566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22489566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2249b1a666ecSBarry Smith 2250b1a666ecSBarry Smith /* local sweep */ 22519566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2252b1a666ecSBarry Smith } 2253ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2254b1a666ecSBarry Smith 22559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2256b1a666ecSBarry Smith PetscFunctionReturn(0); 2257b1a666ecSBarry Smith } 2258b1a666ecSBarry Smith 2259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2260d71ae5a4SJacob Faibussowitsch { 226147f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2262a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 226347f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 226447f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 226547f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 226647f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 226747f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 226847f7623dSRémi Lacroix PetscReal *work; 226947f7623dSRémi Lacroix 227047f7623dSRémi Lacroix PetscFunctionBegin; 22719566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22729566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2273857cbf51SRichard Tran Mills if (type == NORM_2) { 227447f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227547f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227647f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227747f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 227847f7623dSRémi Lacroix a_val++; 227947f7623dSRémi Lacroix } 228047f7623dSRémi Lacroix } 228147f7623dSRémi Lacroix } 228247f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228547f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 228647f7623dSRémi Lacroix b_val++; 228747f7623dSRémi Lacroix } 228847f7623dSRémi Lacroix } 228947f7623dSRémi Lacroix } 2290857cbf51SRichard Tran Mills } else if (type == NORM_1) { 229147f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229447f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 229547f7623dSRémi Lacroix a_val++; 229647f7623dSRémi Lacroix } 229747f7623dSRémi Lacroix } 229847f7623dSRémi Lacroix } 229947f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230247f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 230347f7623dSRémi Lacroix b_val++; 230447f7623dSRémi Lacroix } 230547f7623dSRémi Lacroix } 230647f7623dSRémi Lacroix } 2307857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 230847f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 230947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 231047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 231147f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 231247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 231347f7623dSRémi Lacroix a_val++; 231447f7623dSRémi Lacroix } 231547f7623dSRémi Lacroix } 231647f7623dSRémi Lacroix } 231747f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 231847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 231947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 232047f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 232147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 232247f7623dSRémi Lacroix b_val++; 232347f7623dSRémi Lacroix } 232447f7623dSRémi Lacroix } 232547f7623dSRémi Lacroix } 2326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2327a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2328a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2329a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2330857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2331a873a8cdSSam Reynolds a_val++; 2332a873a8cdSSam Reynolds } 2333a873a8cdSSam Reynolds } 2334a873a8cdSSam Reynolds } 2335a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2336a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2337a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2338857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2339a873a8cdSSam Reynolds b_val++; 2340a873a8cdSSam Reynolds } 2341a873a8cdSSam Reynolds } 2342a873a8cdSSam Reynolds } 2343857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2344857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2345857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2346857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2347857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2348857cbf51SRichard Tran Mills a_val++; 2349857cbf51SRichard Tran Mills } 2350857cbf51SRichard Tran Mills } 2351857cbf51SRichard Tran Mills } 2352857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2353857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2354857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2355857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2356857cbf51SRichard Tran Mills b_val++; 2357857cbf51SRichard Tran Mills } 2358857cbf51SRichard Tran Mills } 2359857cbf51SRichard Tran Mills } 2360857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2361857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23621c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 236347f7623dSRémi Lacroix } else { 23641c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 236547f7623dSRémi Lacroix } 23669566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2367857cbf51SRichard Tran Mills if (type == NORM_2) { 2368a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2369857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2370a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 237147f7623dSRémi Lacroix } 237247f7623dSRémi Lacroix PetscFunctionReturn(0); 237347f7623dSRémi Lacroix } 237447f7623dSRémi Lacroix 2375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2376d71ae5a4SJacob Faibussowitsch { 2377bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2378bbead8a2SBarry Smith 2379bbead8a2SBarry Smith PetscFunctionBegin; 23809566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23817b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23827b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23837b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2384bbead8a2SBarry Smith PetscFunctionReturn(0); 2385bbead8a2SBarry Smith } 2386bbead8a2SBarry Smith 2387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2388d71ae5a4SJacob Faibussowitsch { 23897d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23906f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23917d68702bSBarry Smith 23927d68702bSBarry Smith PetscFunctionBegin; 23936f33a894SBarry Smith if (!Y->preallocated) { 23949566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23956f33a894SBarry Smith } else if (!aij->nz) { 2396b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23979566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2398b83222d8SBarry Smith aij->nonew = nonew; 23997d68702bSBarry Smith } 24009566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 24017d68702bSBarry Smith PetscFunctionReturn(0); 24027d68702bSBarry Smith } 24038c7482ecSBarry Smith 2404d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2405d71ae5a4SJacob Faibussowitsch { 24063b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 24073b49f96aSBarry Smith 24083b49f96aSBarry Smith PetscFunctionBegin; 24095f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 24109566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 24113b49f96aSBarry Smith if (d) { 24123b49f96aSBarry Smith PetscInt rstart; 24139566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24143b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24153b49f96aSBarry Smith } 24163b49f96aSBarry Smith PetscFunctionReturn(0); 24173b49f96aSBarry Smith } 24183b49f96aSBarry Smith 2419d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2420d71ae5a4SJacob Faibussowitsch { 2421a5b7ff6bSBarry Smith PetscFunctionBegin; 2422a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 2423a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2424a5b7ff6bSBarry Smith } 2425a5b7ff6bSBarry Smith 242679bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24273964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2428cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2429cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2430cc2dc46cSBarry Smith MatMult_MPIBAIJ, 243197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24327c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24337c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2434f4259b30SLisandro Dalcin NULL, 2435f4259b30SLisandro Dalcin NULL, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin /*10*/ NULL, 2438f4259b30SLisandro Dalcin NULL, 2439f4259b30SLisandro Dalcin NULL, 2440b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2441cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24437fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2444cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2445cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2446cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2448cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2449cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2450cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2451d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 2454f4259b30SLisandro Dalcin NULL, 2455f4259b30SLisandro Dalcin NULL, 24564994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2457f4259b30SLisandro Dalcin NULL, 2458f4259b30SLisandro Dalcin NULL, 2459a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2460f4259b30SLisandro Dalcin NULL, 2461d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2462f4259b30SLisandro Dalcin NULL, 2463f4259b30SLisandro Dalcin NULL, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin NULL, 2466d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24677dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2468cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2469cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24703c896bc6SHong Zhang MatCopy_MPIBAIJ, 2471f4259b30SLisandro Dalcin /*44*/ NULL, 2472cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24737d68702bSBarry Smith MatShift_MPIBAIJ, 2474f4259b30SLisandro Dalcin NULL, 24756f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2476f4259b30SLisandro Dalcin /*49*/ NULL, 2477f4259b30SLisandro Dalcin NULL, 2478f4259b30SLisandro Dalcin NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin NULL, 248193dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2482f4259b30SLisandro Dalcin NULL, 2483cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 248482094794SBarry Smith MatPermute_MPIBAIJ, 2485cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24867dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2487f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2488f14a1c24SBarry Smith MatView_MPIBAIJ, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin /*64*/ NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin /*74*/ NULL, 2502f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin /*79*/ NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 25105bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2511f4259b30SLisandro Dalcin /*84*/ NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin /*89*/ NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin /*94*/ NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin /*99*/ NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin NULL, 25292726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin /*104*/ NULL, 253299cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25338c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2534f4259b30SLisandro Dalcin NULL, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin /*109*/ NULL, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin NULL, 2539f4259b30SLisandro Dalcin NULL, 25403b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2541d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2542f4259b30SLisandro Dalcin NULL, 25434683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2544f4259b30SLisandro Dalcin NULL, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin /*119*/ NULL, 2547f4259b30SLisandro Dalcin NULL, 2548f4259b30SLisandro Dalcin NULL, 2549f4259b30SLisandro Dalcin NULL, 2550e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2551f4259b30SLisandro Dalcin /*124*/ NULL, 2552a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25533964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2554f4259b30SLisandro Dalcin NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin /*129*/ NULL, 2557f4259b30SLisandro Dalcin NULL, 2558f4259b30SLisandro Dalcin NULL, 2559f4259b30SLisandro Dalcin NULL, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin /*134*/ NULL, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin NULL, 2564f4259b30SLisandro Dalcin NULL, 2565f4259b30SLisandro Dalcin NULL, 256646533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2567f4259b30SLisandro Dalcin NULL, 2568f4259b30SLisandro Dalcin NULL, 2569bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2570f4259b30SLisandro Dalcin NULL, 2571d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2572d70f29a3SPierre Jolivet NULL, 2573d70f29a3SPierre Jolivet NULL, 257499a7f59eSMark Adams NULL, 257599a7f59eSMark Adams NULL, 25767fb60732SBarry Smith NULL, 25779371c9d4SSatish Balay /*150*/ NULL}; 257879bdfe76SSatish Balay 2579cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2580c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2581d94109b8SHong Zhang 2582d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2583d71ae5a4SJacob Faibussowitsch { 2584b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2585f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2586f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2587f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2588d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25893bd0feecSPierre Jolivet PetscBool nooffprocentries; 2590aac34f13SBarry Smith 2591aac34f13SBarry Smith PetscFunctionBegin; 25929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25969566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2597d0f46423SBarry Smith m = B->rmap->n / bs; 2598d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2599d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2600d0f46423SBarry Smith cend = B->cmap->rend / bs; 2601b8d659d7SLisandro Dalcin 26025f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2604aac34f13SBarry Smith for (i = 0; i < m; i++) { 2605cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26065f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2607b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 260837cd3c0dSBarry Smith dlen = 0; 260937cd3c0dSBarry Smith olen = 0; 2610cf12db73SBarry Smith JJ = jj + ii[i]; 2611b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 261237cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261337cd3c0dSBarry Smith else dlen++; 2614aac34f13SBarry Smith JJ++; 2615aac34f13SBarry Smith } 261637cd3c0dSBarry Smith d_nnz[i] = dlen; 261737cd3c0dSBarry Smith o_nnz[i] = olen; 2618aac34f13SBarry Smith } 26199566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26209566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2621aac34f13SBarry Smith 2622b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 262348a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2624b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2625b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2626cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2627cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2628bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2629cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26309566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26313adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26323adadaf3SJed Brown PetscInt j; 26333adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26343adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26363adadaf3SJed Brown } 26373adadaf3SJed Brown } 2638aac34f13SBarry Smith } 2639aac34f13SBarry Smith 26409566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26413bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26423bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26453bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26463bd0feecSPierre Jolivet 26479566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2648aac34f13SBarry Smith PetscFunctionReturn(0); 2649aac34f13SBarry Smith } 2650aac34f13SBarry Smith 2651aac34f13SBarry Smith /*@C 265211a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2653aac34f13SBarry Smith 2654d083f849SBarry Smith Collective 2655aac34f13SBarry Smith 2656aac34f13SBarry Smith Input Parameters: 26571c4f3114SJed Brown + B - the matrix 2658dfb205c3SBarry Smith . bs - the block size 2659aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2660aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2661aac34f13SBarry Smith - v - optional values in the matrix 2662aac34f13SBarry Smith 2663664954b6SBarry Smith Level: advanced 2664aac34f13SBarry Smith 266595452b02SPatrick Sanan Notes: 266611a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 266711a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26683adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 266911a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26703adadaf3SJed Brown block column and the second index is over columns within a block. 26713adadaf3SJed Brown 2672664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2673664954b6SBarry Smith 2674db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2675aac34f13SBarry Smith @*/ 2676d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2677d71ae5a4SJacob Faibussowitsch { 2678aac34f13SBarry Smith PetscFunctionBegin; 26796ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26806ba663aaSJed Brown PetscValidType(B, 1); 26816ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2682cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 2683aac34f13SBarry Smith PetscFunctionReturn(0); 2684aac34f13SBarry Smith } 2685aac34f13SBarry Smith 2686d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2687d71ae5a4SJacob Faibussowitsch { 2688a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2689535b19f3SBarry Smith PetscInt i; 26905d2a9ed1SStefano Zampini PetscMPIInt size; 2691a23d5eceSKris Buschelman 2692a23d5eceSKris Buschelman PetscFunctionBegin; 26939566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 26949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26969566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2697899cda47SBarry Smith 2698a23d5eceSKris Buschelman if (d_nnz) { 2699ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2700a23d5eceSKris Buschelman } 2701a23d5eceSKris Buschelman if (o_nnz) { 2702ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2703a23d5eceSKris Buschelman } 2704a23d5eceSKris Buschelman 2705a23d5eceSKris Buschelman b = (Mat_MPIBAIJ *)B->data; 2706a23d5eceSKris Buschelman b->bs2 = bs * bs; 2707d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2708d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2709d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2710d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2711a23d5eceSKris Buschelman 2712ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2713d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2714d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2715d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2716d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2717a23d5eceSKris Buschelman 2718cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 27199566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 2720cb7b82ddSBarry Smith #else 27219566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2722cb7b82ddSBarry Smith #endif 27239566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27249566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27259566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2726cb7b82ddSBarry Smith 2727cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 27299566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27309566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27329566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2733cb7b82ddSBarry Smith 2734526dfc15SBarry Smith if (!B->preallocated) { 27359566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27369566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27379566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 27389566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 2739526dfc15SBarry Smith } 2740a23d5eceSKris Buschelman 27419566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27429566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2743526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2744cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2745cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2746a23d5eceSKris Buschelman PetscFunctionReturn(0); 2747a23d5eceSKris Buschelman } 2748a23d5eceSKris Buschelman 27497087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27507087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27515bf65638SKris Buschelman 2752d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2753d71ae5a4SJacob Faibussowitsch { 275482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 275582094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 275682094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 275782094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 275882094794SBarry Smith 275982094794SBarry Smith PetscFunctionBegin; 27609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 276182094794SBarry Smith ii[0] = 0; 276282094794SBarry Smith for (i = 0; i < M; i++) { 276308401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 276408401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 276582094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27665ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27675ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27689371c9d4SSatish Balay if (jd[j] == i) { 27699371c9d4SSatish Balay ii[i + 1]--; 27709371c9d4SSatish Balay break; 27719371c9d4SSatish Balay } 27725ee9ba1cSJed Brown } 277382094794SBarry Smith } 27749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 277582094794SBarry Smith cnt = 0; 277682094794SBarry Smith for (i = 0; i < M; i++) { 277782094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 277882094794SBarry Smith if (garray[jo[j]] > rstart) break; 277982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 278082094794SBarry Smith } 278182094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2782ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 278382094794SBarry Smith } 2784ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 278582094794SBarry Smith } 27869566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 278782094794SBarry Smith PetscFunctionReturn(0); 278882094794SBarry Smith } 278982094794SBarry Smith 2790c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 279162471d69SBarry Smith 2792cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2793b2573a8aSBarry Smith 2794d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2795d71ae5a4SJacob Faibussowitsch { 279662471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 279785a69837SSatish Balay Mat_MPIAIJ *b; 27985f80ce2aSJacob Faibussowitsch Mat B; 279962471d69SBarry Smith 280062471d69SBarry Smith PetscFunctionBegin; 28015f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 280262471d69SBarry Smith 28030f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28040f6d62edSLisandro Dalcin B = *newmat; 28050f6d62edSLisandro Dalcin } else { 28069566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28079566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28099566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28119566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28120f6d62edSLisandro Dalcin } 281362471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 281462471d69SBarry Smith 28150f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28169566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28179566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28180f6d62edSLisandro Dalcin } else { 28199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28219566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(A)); 28229566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28239566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 28259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 28260f6d62edSLisandro Dalcin } 28279566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28289566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28290f6d62edSLisandro Dalcin 2830511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28319566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 283262471d69SBarry Smith } else { 283362471d69SBarry Smith *newmat = B; 283462471d69SBarry Smith } 283562471d69SBarry Smith PetscFunctionReturn(0); 283662471d69SBarry Smith } 283762471d69SBarry Smith 28380bad9183SKris Buschelman /*MC 2839fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28400bad9183SKris Buschelman 28410bad9183SKris Buschelman Options Database Keys: 284211a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28438c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28446679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 284567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28460bad9183SKris Buschelman 28470bad9183SKris Buschelman Level: beginner 28480cd7f59aSBarry Smith 284911a5261eSBarry Smith Note: 285011a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 285111a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28520bad9183SKris Buschelman 285311a5261eSBarry Smith .seealso: MATBAIJ`, MATSEQBAIJ`, `MatCreateBAIJ` 28540bad9183SKris Buschelman M*/ 28550bad9183SKris Buschelman 2856cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2857c0cdd4a1SDahai Guo 2858d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2859d71ae5a4SJacob Faibussowitsch { 2860273d9f13SBarry Smith Mat_MPIBAIJ *b; 286194ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2862273d9f13SBarry Smith 2863273d9f13SBarry Smith PetscFunctionBegin; 28644dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 286582502324SSatish Balay B->data = (void *)b; 286682502324SSatish Balay 28679566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 2868273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2869273d9f13SBarry Smith 2870273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2873273d9f13SBarry Smith 2874273d9f13SBarry Smith /* build local table of row and column ownerships */ 28759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2876273d9f13SBarry Smith 2877273d9f13SBarry Smith /* build cache for off array entries formed */ 28789566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 287926fbe8dcSKarl Rupp 2880273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28810298fd71SBarry Smith b->colmap = NULL; 28820298fd71SBarry Smith b->garray = NULL; 2883273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2884273d9f13SBarry Smith 2885273d9f13SBarry Smith /* stuff used in block assembly */ 2886f4259b30SLisandro Dalcin b->barray = NULL; 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2889f4259b30SLisandro Dalcin b->lvec = NULL; 2890f4259b30SLisandro Dalcin b->Mvctx = NULL; 2891273d9f13SBarry Smith 2892273d9f13SBarry Smith /* stuff for MatGetRow() */ 2893f4259b30SLisandro Dalcin b->rowindices = NULL; 2894f4259b30SLisandro Dalcin b->rowvalues = NULL; 2895273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2896273d9f13SBarry Smith 2897273d9f13SBarry Smith /* hash table stuff */ 2898f4259b30SLisandro Dalcin b->ht = NULL; 2899f4259b30SLisandro Dalcin b->hd = NULL; 2900273d9f13SBarry Smith b->ht_size = 0; 2901273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2902273d9f13SBarry Smith b->ht_fact = 0; 2903273d9f13SBarry Smith b->ht_total_ct = 0; 2904273d9f13SBarry Smith b->ht_insert_ct = 0; 2905273d9f13SBarry Smith 29067dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29077a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29087a868f3eSHong Zhang 29099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29127ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29147ea3e4caSstefano_zampini #endif 29159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 292394ae4db5SBarry Smith 2924d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29259566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 292694ae4db5SBarry Smith if (flg) { 292794ae4db5SBarry Smith PetscReal fact = 1.39; 29289566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29299566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 293094ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29319566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29329566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 293394ae4db5SBarry Smith } 2934d0609cedSBarry Smith PetscOptionsEnd(); 2935273d9f13SBarry Smith PetscFunctionReturn(0); 2936273d9f13SBarry Smith } 2937273d9f13SBarry Smith 2938209238afSKris Buschelman /*MC 2939002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2940209238afSKris Buschelman 294111a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 294211a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2943209238afSKris Buschelman 2944209238afSKris Buschelman Options Database Keys: 294511a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2946209238afSKris Buschelman 2947209238afSKris Buschelman Level: beginner 2948209238afSKris Buschelman 2949c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2950209238afSKris Buschelman M*/ 2951209238afSKris Buschelman 2952273d9f13SBarry Smith /*@C 295311a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 2954273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2955273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2956273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2957273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2958273d9f13SBarry Smith 2959*c3339decSBarry Smith Collective 2960273d9f13SBarry Smith 2961273d9f13SBarry Smith Input Parameters: 29621c4f3114SJed Brown + B - the matrix 296311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 2964bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2965273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2966273d9f13SBarry Smith submatrix (same for all local rows) 2967273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2968273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29690298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 297095742e49SBarry Smith set it even if it is zero. 2971273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2972273d9f13SBarry Smith submatrix (same for all local rows). 2973273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2974273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 29750298fd71SBarry Smith each block row) or NULL. 2976273d9f13SBarry Smith 297749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2978273d9f13SBarry Smith 2979273d9f13SBarry Smith Options Database Keys: 29808c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 298167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2982273d9f13SBarry Smith 2983273d9f13SBarry Smith Notes: 298411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2985273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2986273d9f13SBarry Smith 2987273d9f13SBarry Smith Storage Information: 2988273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2989273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2990273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2991273d9f13SBarry Smith local matrix (a rectangular submatrix). 2992273d9f13SBarry Smith 2993273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2994273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 29950298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2996273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2997273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2998273d9f13SBarry Smith 2999273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3000273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3001273d9f13SBarry Smith 3002273d9f13SBarry Smith .vb 3003273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3004a4b1a0f6SJed Brown -------------------------- 3005273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3006273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3007273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3008a4b1a0f6SJed Brown -------------------------- 3009273d9f13SBarry Smith .ve 3010273d9f13SBarry Smith 3011273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3012273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3013273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 301411a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3015273d9f13SBarry Smith 3016273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3017273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3018273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3019273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3020273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3021273d9f13SBarry Smith matrices. 3022273d9f13SBarry Smith 302311a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3024aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3025aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3026aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3027aa95bbe8SBarry Smith 3028273d9f13SBarry Smith Level: intermediate 3029273d9f13SBarry Smith 303011a5261eSBarry Smith .seealso: `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3031273d9f13SBarry Smith @*/ 3032d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3033d71ae5a4SJacob Faibussowitsch { 3034273d9f13SBarry Smith PetscFunctionBegin; 30356ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30366ba663aaSJed Brown PetscValidType(B, 1); 30376ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3038cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 3039273d9f13SBarry Smith PetscFunctionReturn(0); 3040273d9f13SBarry Smith } 3041273d9f13SBarry Smith 304279bdfe76SSatish Balay /*@C 304311a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 304479bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 304579bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 304679bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 304779bdfe76SSatish Balay performance can be increased by more than a factor of 50. 304879bdfe76SSatish Balay 3049d083f849SBarry Smith Collective 3050db81eaa0SLois Curfman McInnes 305179bdfe76SSatish Balay Input Parameters: 3052db81eaa0SLois Curfman McInnes + comm - MPI communicator 305311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 305411a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 305511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 305692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 305792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 305811a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 305992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 306111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 306211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 306347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 306479bdfe76SSatish Balay submatrix (same for all local rows) 306547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 306692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30670298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 306895742e49SBarry Smith and set it even if it is zero. 306947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 307079bdfe76SSatish Balay submatrix (same for all local rows). 307147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 307292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30730298fd71SBarry Smith each block row) or NULL. 307479bdfe76SSatish Balay 307579bdfe76SSatish Balay Output Parameter: 307679bdfe76SSatish Balay . A - the matrix 307779bdfe76SSatish Balay 3078db81eaa0SLois Curfman McInnes Options Database Keys: 30798c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 308067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30813ffaccefSLois Curfman McInnes 308211a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 3083f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 308411a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 3085175b88e8SBarry Smith 3086b259b22eSLois Curfman McInnes Notes: 308749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 308849a6f317SBarry Smith 308947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 309047a75d0bSBarry Smith 309179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 309279bdfe76SSatish Balay (possibly both). 309379bdfe76SSatish Balay 309411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3095be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3096be79a94dSBarry Smith 309779bdfe76SSatish Balay Storage Information: 309879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 309979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 310079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 310179bdfe76SSatish Balay local matrix (a rectangular submatrix). 310279bdfe76SSatish Balay 310379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 310479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31050298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 310679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 310779bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 310879bdfe76SSatish Balay 310979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 311079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 311179bdfe76SSatish Balay 3112db81eaa0SLois Curfman McInnes .vb 3113db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3114a4b1a0f6SJed Brown -------------------------- 3115db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3116db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3117db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3118a4b1a0f6SJed Brown -------------------------- 3119db81eaa0SLois Curfman McInnes .ve 312079bdfe76SSatish Balay 312179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 312279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 312379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 312411a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 312579bdfe76SSatish Balay 3126d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3127d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 312879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 312992e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 313092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31316da5968aSLois Curfman McInnes matrices. 313279bdfe76SSatish Balay 3133027ccd11SLois Curfman McInnes Level: intermediate 3134027ccd11SLois Curfman McInnes 3135db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 313679bdfe76SSatish Balay @*/ 3137d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3138d71ae5a4SJacob Faibussowitsch { 3139b24ad042SBarry Smith PetscMPIInt size; 314079bdfe76SSatish Balay 3141d64ed03dSBarry Smith PetscFunctionBegin; 31429566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3145273d9f13SBarry Smith if (size > 1) { 31469566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31479566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3148273d9f13SBarry Smith } else { 31499566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31509566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31513914022bSBarry Smith } 31523a40ed3dSBarry Smith PetscFunctionReturn(0); 315379bdfe76SSatish Balay } 3154026e39d0SSatish Balay 3155d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3156d71ae5a4SJacob Faibussowitsch { 31570ac07820SSatish Balay Mat mat; 31580ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3159b24ad042SBarry Smith PetscInt len = 0; 31600ac07820SSatish Balay 3161d64ed03dSBarry Smith PetscFunctionBegin; 3162f4259b30SLisandro Dalcin *newmat = NULL; 31639566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31659566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31667fff6886SHong Zhang 3167d5f3da31SBarry Smith mat->factortype = matin->factortype; 3168273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31690ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31707fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31717fff6886SHong Zhang 3172273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3173d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31740ac07820SSatish Balay a->bs2 = oldmat->bs2; 31750ac07820SSatish Balay a->mbs = oldmat->mbs; 31760ac07820SSatish Balay a->nbs = oldmat->nbs; 31770ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31780ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31790ac07820SSatish Balay 31809566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 31819566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3182899cda47SBarry Smith 31830ac07820SSatish Balay a->size = oldmat->size; 31840ac07820SSatish Balay a->rank = oldmat->rank; 3185aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3186aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3187f4259b30SLisandro Dalcin a->rowindices = NULL; 3188f4259b30SLisandro Dalcin a->rowvalues = NULL; 31890ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3190f4259b30SLisandro Dalcin a->barray = NULL; 3191899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3192899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3193899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3194899cda47SBarry Smith a->cendbs = oldmat->cendbs; 31950ac07820SSatish Balay 3196133cdb44SSatish Balay /* hash table stuff */ 3197f4259b30SLisandro Dalcin a->ht = NULL; 3198f4259b30SLisandro Dalcin a->hd = NULL; 3199133cdb44SSatish Balay a->ht_size = 0; 3200133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 320125fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3202133cdb44SSatish Balay a->ht_total_ct = 0; 3203133cdb44SSatish Balay a->ht_insert_ct = 0; 3204133cdb44SSatish Balay 32059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32060ac07820SSatish Balay if (oldmat->colmap) { 3207aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32089566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap, &a->colmap)); 320948e59246SSatish Balay #else 32109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 321248e59246SSatish Balay #endif 3213f4259b30SLisandro Dalcin } else a->colmap = NULL; 32144beb1cfeSHong Zhang 32150ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 32169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32179566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3218f4259b30SLisandro Dalcin } else a->garray = NULL; 32190ac07820SSatish Balay 32209566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32219566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32229566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32237fff6886SHong Zhang 32249566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32259566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 32269566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32270ac07820SSatish Balay *newmat = mat; 32283a40ed3dSBarry Smith PetscFunctionReturn(0); 32290ac07820SSatish Balay } 323057b952d6SSatish Balay 3231618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3232d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3233d71ae5a4SJacob Faibussowitsch { 3234b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3235b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3236b51a4376SLisandro Dalcin PetscScalar *matvals; 3237b51a4376SLisandro Dalcin 3238b51a4376SLisandro Dalcin PetscFunctionBegin; 32399566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3240b51a4376SLisandro Dalcin 3241b51a4376SLisandro Dalcin /* read in matrix header */ 32429566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32435f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32449371c9d4SSatish Balay M = header[1]; 32459371c9d4SSatish Balay N = header[2]; 32469371c9d4SSatish Balay nz = header[3]; 32475f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32485f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32495f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3250b51a4376SLisandro Dalcin 3251b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32529566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3253618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3254618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3255618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3256b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3257b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3258b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3261b51a4376SLisandro Dalcin 3262b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32639566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32645f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32659566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32669566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32679566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32689566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32699371c9d4SSatish Balay mbs = m / bs; 32709371c9d4SSatish Balay nbs = n / bs; 3271b51a4376SLisandro Dalcin 3272b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32749566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32759371c9d4SSatish Balay rowidxs[0] = 0; 32769371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32771c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32785f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3279b51a4376SLisandro Dalcin 3280b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32839566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3284b51a4376SLisandro Dalcin 3285b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3286b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3287b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3288618cc2edSLisandro Dalcin PetscBool sbaij, done; 3289b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3290b51a4376SLisandro Dalcin 32919566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 32929566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 32939566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 32949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3295b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 32969566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 32979566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3298618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3299618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3300618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3301618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3302618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3303618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3304618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3305b51a4376SLisandro Dalcin } else { 33069566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3307b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3308b51a4376SLisandro Dalcin } 3309b51a4376SLisandro Dalcin } 3310618cc2edSLisandro Dalcin } 3311618cc2edSLisandro Dalcin } 3312618cc2edSLisandro Dalcin } 33139566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33149566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33159566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33169566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33179566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3318b51a4376SLisandro Dalcin } 3319b51a4376SLisandro Dalcin 3320b51a4376SLisandro Dalcin /* store matrix values */ 3321b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3322b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33239566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES)); 3324b51a4376SLisandro Dalcin } 3325b51a4376SLisandro Dalcin 33269566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33279566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 3330b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3331b51a4376SLisandro Dalcin } 3332b51a4376SLisandro Dalcin 3333d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3334d71ae5a4SJacob Faibussowitsch { 33357f489da9SVaclav Hapla PetscBool isbinary; 33364683f7a4SShri Abhyankar 33374683f7a4SShri Abhyankar PetscFunctionBegin; 33389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33395f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33409566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33414683f7a4SShri Abhyankar PetscFunctionReturn(0); 33424683f7a4SShri Abhyankar } 33434683f7a4SShri Abhyankar 3344133cdb44SSatish Balay /*@ 334511a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3346133cdb44SSatish Balay 3347133cdb44SSatish Balay Input Parameters: 3348a2b725a8SWilliam Gropp + mat - the matrix 3349a2b725a8SWilliam Gropp - fact - factor 3350133cdb44SSatish Balay 335111a5261eSBarry Smith Options Database Key: 335211a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3353fee21e36SBarry Smith 33548c890885SBarry Smith Level: advanced 33558c890885SBarry Smith 335611a5261eSBarry Smith .seealso: `MATMPIBAIJ`, `MatSetOption()` 3357133cdb44SSatish Balay @*/ 3358d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3359d71ae5a4SJacob Faibussowitsch { 33605bf65638SKris Buschelman PetscFunctionBegin; 3361cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33625bf65638SKris Buschelman PetscFunctionReturn(0); 33635bf65638SKris Buschelman } 33645bf65638SKris Buschelman 3365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3366d71ae5a4SJacob Faibussowitsch { 336725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3368133cdb44SSatish Balay 3369133cdb44SSatish Balay PetscFunctionBegin; 3370133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3371133cdb44SSatish Balay baij->ht_fact = fact; 3372133cdb44SSatish Balay PetscFunctionReturn(0); 3373133cdb44SSatish Balay } 3374f2a5309cSSatish Balay 3375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3376d71ae5a4SJacob Faibussowitsch { 3377f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3378ab4d48faSStefano Zampini PetscBool flg; 33795fd66863SKarl Rupp 3380f2a5309cSSatish Balay PetscFunctionBegin; 33819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33825f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 338321e72a00SBarry Smith if (Ad) *Ad = a->A; 338421e72a00SBarry Smith if (Ao) *Ao = a->B; 338521e72a00SBarry Smith if (colmap) *colmap = a->garray; 3386f2a5309cSSatish Balay PetscFunctionReturn(0); 3387f2a5309cSSatish Balay } 338885535b8eSBarry Smith 338985535b8eSBarry Smith /* 339085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 339185535b8eSBarry Smith */ 339285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 339385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 339485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 339585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 339685535b8eSBarry Smith #endif 339785535b8eSBarry Smith 339885535b8eSBarry Smith /*@C 339911a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 340085535b8eSBarry Smith 3401*c3339decSBarry Smith Collective 340285535b8eSBarry Smith 340385535b8eSBarry Smith Input Parameters: 340485535b8eSBarry Smith + mat - the matrix 340585535b8eSBarry Smith . min - number of input rows 340685535b8eSBarry Smith . im - input rows 340785535b8eSBarry Smith . nin - number of input columns 340885535b8eSBarry Smith . in - input columns 340985535b8eSBarry Smith . v - numerical values input 341011a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 341185535b8eSBarry Smith 341211a5261eSBarry Smith Developer Note: 341311a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 341485535b8eSBarry Smith 341585535b8eSBarry Smith Level: advanced 341685535b8eSBarry Smith 3417db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()` 341885535b8eSBarry Smith @*/ 3419d71ae5a4SJacob Faibussowitsch PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3420d71ae5a4SJacob Faibussowitsch { 342185535b8eSBarry Smith /* convert input arguments to C version */ 342285535b8eSBarry Smith Mat mat = *matin; 342385535b8eSBarry Smith PetscInt m = *min, n = *nin; 342485535b8eSBarry Smith InsertMode addv = *addvin; 342585535b8eSBarry Smith 342685535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 342785535b8eSBarry Smith const MatScalar *value; 342885535b8eSBarry Smith MatScalar *barray = baij->barray; 3429ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 343085535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 343185535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3432d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 343385535b8eSBarry Smith 343485535b8eSBarry Smith PetscFunctionBegin; 343585535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 343626fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34375f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34385f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 343985535b8eSBarry Smith if (mat->assembled) { 344085535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 344185535b8eSBarry Smith mat->assembled = PETSC_FALSE; 344285535b8eSBarry Smith } 34439566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 344485535b8eSBarry Smith 344585535b8eSBarry Smith if (!barray) { 34469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 344785535b8eSBarry Smith baij->barray = barray; 344885535b8eSBarry Smith } 344985535b8eSBarry Smith 345026fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 345126fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 345226fbe8dcSKarl Rupp 345385535b8eSBarry Smith for (i = 0; i < m; i++) { 345485535b8eSBarry Smith if (im[i] < 0) continue; 34556bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 345685535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 345785535b8eSBarry Smith row = im[i] - rstart; 345885535b8eSBarry Smith for (j = 0; j < n; j++) { 345985535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 346085535b8eSBarry Smith if ((roworiented) && (n == 1)) { 346185535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 346285535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 346385535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 346485535b8eSBarry Smith } else { /* Here a copy is required */ 346585535b8eSBarry Smith if (roworiented) { 346685535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 346785535b8eSBarry Smith } else { 346885535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 346985535b8eSBarry Smith } 347085535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3471ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 347285535b8eSBarry Smith } 347385535b8eSBarry Smith barray -= bs2; 347485535b8eSBarry Smith } 347585535b8eSBarry Smith 347685535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 347785535b8eSBarry Smith col = in[j] - cstart; 34789566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3479f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3480f7d195e4SLawrence Mitchell continue; 3481f7d195e4SLawrence Mitchell } else { 3482f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 348385535b8eSBarry Smith if (mat->was_assembled) { 348448a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 348585535b8eSBarry Smith 348685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 348785535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34889371c9d4SSatish Balay { 34899371c9d4SSatish Balay PetscInt data; 34909566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data)); 349108401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 349285535b8eSBarry Smith } 349385535b8eSBarry Smith #else 349408401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 349585535b8eSBarry Smith #endif 349685535b8eSBarry Smith #endif 349785535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34989566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col)); 349985535b8eSBarry Smith col = (col - 1) / bs; 350085535b8eSBarry Smith #else 350185535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 350285535b8eSBarry Smith #endif 350385535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 35049566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 350585535b8eSBarry Smith col = in[j]; 350685535b8eSBarry Smith } 350726fbe8dcSKarl Rupp } else col = in[j]; 35089566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 350985535b8eSBarry Smith } 351085535b8eSBarry Smith } 351185535b8eSBarry Smith } else { 351285535b8eSBarry Smith if (!baij->donotstash) { 351385535b8eSBarry Smith if (roworiented) { 35149566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 351585535b8eSBarry Smith } else { 35169566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 351785535b8eSBarry Smith } 351885535b8eSBarry Smith } 351985535b8eSBarry Smith } 352085535b8eSBarry Smith } 352185535b8eSBarry Smith 352285535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 352485535b8eSBarry Smith PetscFunctionReturn(0); 352585535b8eSBarry Smith } 3526dfb205c3SBarry Smith 3527dfb205c3SBarry Smith /*@ 352811a5261eSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block 3529dfb205c3SBarry Smith CSR format the local rows. 3530dfb205c3SBarry Smith 3531d083f849SBarry Smith Collective 3532dfb205c3SBarry Smith 3533dfb205c3SBarry Smith Input Parameters: 3534dfb205c3SBarry Smith + comm - MPI communicator 3535dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 353611a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3537dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 353811a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 3539dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 354011a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 354111a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 3542483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3543dfb205c3SBarry Smith . j - column indices 3544dfb205c3SBarry Smith - a - matrix values 3545dfb205c3SBarry Smith 3546dfb205c3SBarry Smith Output Parameter: 3547dfb205c3SBarry Smith . mat - the matrix 3548dfb205c3SBarry Smith 3549dfb205c3SBarry Smith Level: intermediate 3550dfb205c3SBarry Smith 3551dfb205c3SBarry Smith Notes: 3552dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3553dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 355411a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3555dfb205c3SBarry Smith 35563adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35573adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35583adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35593adadaf3SJed Brown with column-major ordering within blocks. 35603adadaf3SJed Brown 3561dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3562dfb205c3SBarry Smith 3563db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3564db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3565dfb205c3SBarry Smith @*/ 3566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3567d71ae5a4SJacob Faibussowitsch { 3568dfb205c3SBarry Smith PetscFunctionBegin; 35695f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35705f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35719566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35739566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35749566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35759566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35769566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35779566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35789566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 3579dfb205c3SBarry Smith PetscFunctionReturn(0); 3580dfb205c3SBarry Smith } 3581e561ad89SHong Zhang 3582d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3583d71ae5a4SJacob Faibussowitsch { 3584bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3585bd153df0SHong Zhang PetscInt *indx; 3586bd153df0SHong Zhang PetscScalar *values; 3587e561ad89SHong Zhang 3588e561ad89SHong Zhang PetscFunctionBegin; 35899566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3590bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3591bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 35922c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3593bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 359477f764caSHong Zhang PetscMPIInt rank, size; 3595e561ad89SHong Zhang 35969566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 35979371c9d4SSatish Balay mbs = m / bs; 35989371c9d4SSatish Balay Nbs = N / cbs; 359948a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3600da91a574SPierre Jolivet nbs = n / cbs; 3601e561ad89SHong Zhang 36029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3603d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 360477f764caSHong Zhang 36059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 360777f764caSHong Zhang if (rank == size - 1) { 360877f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36095f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 361077f764caSHong Zhang } 361177f764caSHong Zhang 3612d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3613bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36149566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3615647a6520SHong Zhang nnz = nnz / bs; 3616647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36179566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36189566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3619e561ad89SHong Zhang } 36209566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3621e561ad89SHong Zhang 36229566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36259566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36269566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36279566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3628d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36299566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3630e561ad89SHong Zhang } 3631e561ad89SHong Zhang 3632bd153df0SHong Zhang /* numeric phase */ 36339566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36349566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3635e561ad89SHong Zhang 3636e561ad89SHong Zhang for (i = 0; i < m; i++) { 36379566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3638e561ad89SHong Zhang Ii = i + rstart; 36399566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36409566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3641e561ad89SHong Zhang } 36429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 3644e561ad89SHong Zhang PetscFunctionReturn(0); 3645e561ad89SHong Zhang } 3646