179bdfe76SSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <petscblaslapack.h> 479bdfe76SSatish Balay 509573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPIBAIJ(Mat); 709573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 809573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 909573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1009573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1109573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1209573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar,Vec,Vec); 1393fea6afSBarry Smith 144a2ae208SSatish Balay #undef __FUNCT__ 15985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 16985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 177843d17aSBarry Smith { 187843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 19dfbe8321SBarry Smith PetscErrorCode ierr; 20985db425SBarry Smith PetscInt i,*idxb = 0; 2187828ca2SBarry Smith PetscScalar *va,*vb; 227843d17aSBarry Smith Vec vtmp; 237843d17aSBarry Smith 247843d17aSBarry Smith PetscFunctionBegin; 25985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 261ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 27985db425SBarry Smith if (idx) { 28192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 29985db425SBarry Smith } 307843d17aSBarry Smith 31d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 32d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 33985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 341ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 357843d17aSBarry Smith 36d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 37d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 387843d17aSBarry Smith } 397843d17aSBarry Smith 401ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 411ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 42c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 447843d17aSBarry Smith PetscFunctionReturn(0); 457843d17aSBarry Smith } 467843d17aSBarry Smith 477fc3c18eSBarry Smith EXTERN_C_BEGIN 484a2ae208SSatish Balay #undef __FUNCT__ 494a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 507087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 517fc3c18eSBarry Smith { 527fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 53dfbe8321SBarry Smith PetscErrorCode ierr; 547fc3c18eSBarry Smith 557fc3c18eSBarry Smith PetscFunctionBegin; 567fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 577fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 587fc3c18eSBarry Smith PetscFunctionReturn(0); 597fc3c18eSBarry Smith } 607fc3c18eSBarry Smith EXTERN_C_END 617fc3c18eSBarry Smith 627fc3c18eSBarry Smith EXTERN_C_BEGIN 634a2ae208SSatish Balay #undef __FUNCT__ 644a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 657087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 667fc3c18eSBarry Smith { 677fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 68dfbe8321SBarry Smith PetscErrorCode ierr; 697fc3c18eSBarry Smith 707fc3c18eSBarry Smith PetscFunctionBegin; 717fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 727fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 737fc3c18eSBarry Smith PetscFunctionReturn(0); 747fc3c18eSBarry Smith } 757fc3c18eSBarry Smith EXTERN_C_END 767fc3c18eSBarry Smith 77537820f0SBarry Smith /* 78537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 80e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8157b952d6SSatish Balay length of colmap equals the global matrix length. 8257b952d6SSatish Balay */ 834a2ae208SSatish Balay #undef __FUNCT__ 84ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private" 85ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8657b952d6SSatish Balay { 8757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 8857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 896849ba73SBarry Smith PetscErrorCode ierr; 90d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9157b952d6SSatish Balay 92d64ed03dSBarry Smith PetscFunctionBegin; 93aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 94e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 9548e59246SSatish Balay for (i=0; i<nbs; i++) { 963861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 9748e59246SSatish Balay } 9848e59246SSatish Balay #else 99b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 101b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 102928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10348e59246SSatish Balay #endif 1043a40ed3dSBarry Smith PetscFunctionReturn(0); 10557b952d6SSatish Balay } 10657b952d6SSatish Balay 107f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 10880c1aa95SSatish Balay { \ 10980c1aa95SSatish Balay \ 11080c1aa95SSatish Balay brow = row/bs; \ 11180c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 112ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11380c1aa95SSatish Balay bcol = col/bs; \ 11480c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 115ab26458aSBarry Smith low = 0; high = nrow; \ 116ab26458aSBarry Smith while (high-low > 3) { \ 117ab26458aSBarry Smith t = (low+high)/2; \ 118ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 119ab26458aSBarry Smith else low = t; \ 120ab26458aSBarry Smith } \ 121ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12280c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12380c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12480c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 125eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 126eada6651SSatish Balay else *bap = value; \ 127ac7a638eSSatish Balay goto a_noinsert; \ 12880c1aa95SSatish Balay } \ 12980c1aa95SSatish Balay } \ 13089280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 131e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 132fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13380c1aa95SSatish Balay N = nrow++ - 1; \ 13480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1373eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13880c1aa95SSatish Balay } \ 1393eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14080c1aa95SSatish Balay rp[_i] = bcol; \ 14180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 142ac7a638eSSatish Balay a_noinsert:; \ 14380c1aa95SSatish Balay ailen[brow] = nrow; \ 14480c1aa95SSatish Balay } 14557b952d6SSatish Balay 146ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 147ac7a638eSSatish Balay { \ 148ac7a638eSSatish Balay brow = row/bs; \ 149ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 150ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 151ac7a638eSSatish Balay bcol = col/bs; \ 152ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 153ac7a638eSSatish Balay low = 0; high = nrow; \ 154ac7a638eSSatish Balay while (high-low > 3) { \ 155ac7a638eSSatish Balay t = (low+high)/2; \ 156ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 157ac7a638eSSatish Balay else low = t; \ 158ac7a638eSSatish Balay } \ 159ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 160ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 161ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 162ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 163ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 164ac7a638eSSatish Balay else *bap = value; \ 165ac7a638eSSatish Balay goto b_noinsert; \ 166ac7a638eSSatish Balay } \ 167ac7a638eSSatish Balay } \ 16889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 169e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 170fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 171085a36d4SBarry Smith CHKMEMQ;\ 172ac7a638eSSatish Balay N = nrow++ - 1; \ 173ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 174ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 175ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1763eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 177ac7a638eSSatish Balay } \ 1783eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 179ac7a638eSSatish Balay rp[_i] = bcol; \ 180ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 181ac7a638eSSatish Balay b_noinsert:; \ 182ac7a638eSSatish Balay bilen[brow] = nrow; \ 183ac7a638eSSatish Balay } 184ac7a638eSSatish Balay 1854a2ae208SSatish Balay #undef __FUNCT__ 1864a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 187b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 18857b952d6SSatish Balay { 18957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19093fea6afSBarry Smith MatScalar value; 191ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 192dfbe8321SBarry Smith PetscErrorCode ierr; 193b24ad042SBarry Smith PetscInt i,j,row,col; 194d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 195d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 196d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 19757b952d6SSatish Balay 198eada6651SSatish Balay /* Some Variables required in the macro */ 19980c1aa95SSatish Balay Mat A = baij->A; 20080c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 201b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2023eda8832SBarry Smith MatScalar *aa=a->a; 203ac7a638eSSatish Balay 204ac7a638eSSatish Balay Mat B = baij->B; 205ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 206b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2073eda8832SBarry Smith MatScalar *ba=b->a; 208ac7a638eSSatish Balay 209b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 210b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2113eda8832SBarry Smith MatScalar *ap,*bap; 21280c1aa95SSatish Balay 213d64ed03dSBarry Smith PetscFunctionBegin; 21471fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 21557b952d6SSatish Balay for (i=0; i<m; i++) { 2165ef9f2a5SBarry Smith if (im[i] < 0) continue; 2172515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 218e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 219639f9d9dSBarry Smith #endif 22057b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22157b952d6SSatish Balay row = im[i] - rstart_orig; 22257b952d6SSatish Balay for (j=0; j<n; j++) { 22357b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 22457b952d6SSatish Balay col = in[j] - cstart_orig; 225db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 226db4deed7SKarl Rupp else value = v[i+j*m]; 227f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22973959e64SBarry Smith } else if (in[j] < 0) continue; 2302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 231660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 232639f9d9dSBarry Smith #endif 23357b952d6SSatish Balay else { 23457b952d6SSatish Balay if (mat->was_assembled) { 235905e6a2fSBarry Smith if (!baij->colmap) { 236ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 237905e6a2fSBarry Smith } 238aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2390f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 240bba1ac68SSatish Balay col = col - 1; 24148e59246SSatish Balay #else 242bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24348e59246SSatish Balay #endif 244c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 245ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2468295de27SSatish Balay col = in[j]; 2479bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2489bf004c3SSatish Balay B = baij->B; 2499bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2509bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2519bf004c3SSatish Balay ba=b->a; 252c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 253c9ef50b2SBarry Smith else col += in[j]%bs; 2548295de27SSatish Balay } else col = in[j]; 255db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 256db4deed7SKarl Rupp else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 2624cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 26390f02eecSBarry Smith if (!baij->donotstash) { 2645080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 265ff2fd236SBarry Smith if (roworiented) { 266b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 267ff2fd236SBarry Smith } else { 268b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27157b952d6SSatish Balay } 27290f02eecSBarry Smith } 2733a40ed3dSBarry Smith PetscFunctionReturn(0); 27457b952d6SSatish Balay } 27557b952d6SSatish Balay 2764a2ae208SSatish Balay #undef __FUNCT__ 27797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 279ab26458aSBarry Smith { 280ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 281dd6ea824SBarry Smith const PetscScalar *value; 282f15d580aSBarry Smith MatScalar *barray=baij->barray; 283ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 284dfbe8321SBarry Smith PetscErrorCode ierr; 285899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 286899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 287d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 288ab26458aSBarry Smith 289b16ae2b1SBarry Smith PetscFunctionBegin; 29030793edcSSatish Balay if (!barray) { 29182502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29282502324SSatish Balay baij->barray = barray; 29330793edcSSatish Balay } 29430793edcSSatish Balay 295ab26458aSBarry Smith if (roworiented) { 296ab26458aSBarry Smith stepval = (n-1)*bs; 297ab26458aSBarry Smith } else { 298ab26458aSBarry Smith stepval = (m-1)*bs; 299ab26458aSBarry Smith } 300ab26458aSBarry Smith for (i=0; i<m; i++) { 3015ef9f2a5SBarry Smith if (im[i] < 0) continue; 3022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 303e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 304ab26458aSBarry Smith #endif 305ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 306ab26458aSBarry Smith row = im[i] - rstart; 307ab26458aSBarry Smith for (j=0; j<n; j++) { 30815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31115b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 312f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31315b57d14SSatish Balay } else { /* Here a copy is required */ 314ab26458aSBarry Smith if (roworiented) { 31553ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 316ab26458aSBarry Smith } else { 31753ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 318abef11f7SSatish Balay } 31953ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 32047513183SBarry Smith for (jj=0; jj<bs; jj++) { 32153ef36baSBarry Smith barray[jj] = value[jj]; 32247513183SBarry Smith } 32353ef36baSBarry Smith barray += bs; 32447513183SBarry Smith } 32530793edcSSatish Balay barray -= bs2; 32615b57d14SSatish Balay } 327abef11f7SSatish Balay 328abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 329abef11f7SSatish Balay col = in[j] - cstart; 33097e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 331ab26458aSBarry Smith } 3325ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3332515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 334cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 335ab26458aSBarry Smith #endif 336ab26458aSBarry Smith else { 337ab26458aSBarry Smith if (mat->was_assembled) { 338ab26458aSBarry Smith if (!baij->colmap) { 339ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 340ab26458aSBarry Smith } 341a5eb4965SSatish Balay 3422515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 343aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 344b24ad042SBarry Smith { PetscInt data; 3450f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 346e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 347fa46199cSSatish Balay } 34848e59246SSatish Balay #else 349e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 350a5eb4965SSatish Balay #endif 35148e59246SSatish Balay #endif 352aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3530f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 354fa46199cSSatish Balay col = (col - 1)/bs; 35548e59246SSatish Balay #else 356a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35748e59246SSatish Balay #endif 3580e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 359ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 360ab26458aSBarry Smith col = in[j]; 3610e9bae81SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]); 362db4deed7SKarl Rupp } else col = in[j]; 36397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 364ab26458aSBarry Smith } 365ab26458aSBarry Smith } 366d64ed03dSBarry Smith } else { 3674cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 368ab26458aSBarry Smith if (!baij->donotstash) { 369ff2fd236SBarry Smith if (roworiented) { 3706fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 371ff2fd236SBarry Smith } else { 3726fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 373ff2fd236SBarry Smith } 374abef11f7SSatish Balay } 375ab26458aSBarry Smith } 376ab26458aSBarry Smith } 3773a40ed3dSBarry Smith PetscFunctionReturn(0); 378ab26458aSBarry Smith } 3796fa18ffdSBarry Smith 3800bdbc534SSatish Balay #define HASH_KEY 0.6180339887 381b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 382b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 383b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3844a2ae208SSatish Balay #undef __FUNCT__ 38597e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38697e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3870bdbc534SSatish Balay { 3880bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 389ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 390dfbe8321SBarry Smith PetscErrorCode ierr; 391b24ad042SBarry Smith PetscInt i,j,row,col; 392d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 393d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 394d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 395329f5518SBarry Smith PetscReal tmp; 3963eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3972515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 398b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3994a15367fSSatish Balay #endif 4000bdbc534SSatish Balay 4010bdbc534SSatish Balay PetscFunctionBegin; 40271fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4030bdbc534SSatish Balay for (i=0; i<m; i++) { 4042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 405e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 406e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4070bdbc534SSatish Balay #endif 4080bdbc534SSatish Balay row = im[i]; 409c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4100bdbc534SSatish Balay for (j=0; j<n; j++) { 4110bdbc534SSatish Balay col = in[j]; 412db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 413db4deed7SKarl Rupp else value = v[i+j*m]; 414b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 415c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 416c2760754SSatish Balay h1 = HASH(size,key,tmp); 4170bdbc534SSatish Balay 418c2760754SSatish Balay 419c2760754SSatish Balay idx = h1; 4202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 421187ce0cbSSatish Balay insert_ct++; 422187ce0cbSSatish Balay total_ct++; 423187ce0cbSSatish Balay if (HT[idx] != key) { 424187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 425187ce0cbSSatish Balay if (idx == size) { 426187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 427f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 428187ce0cbSSatish Balay } 429187ce0cbSSatish Balay } 430187ce0cbSSatish Balay #else 431c2760754SSatish Balay if (HT[idx] != key) { 432c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == size) { 434c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 435f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 446b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 448b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 4790bdbc534SSatish Balay if (roworiented) { 4800bdbc534SSatish Balay stepval = (n-1)*bs; 4810bdbc534SSatish Balay } else { 4820bdbc534SSatish Balay stepval = (m-1)*bs; 4830bdbc534SSatish Balay } 4840bdbc534SSatish Balay for (i=0; i<m; i++) { 4852515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 486e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 487e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4880bdbc534SSatish Balay #endif 4890bdbc534SSatish Balay row = im[i]; 490ab715e2cSSatish Balay v_t = v + i*nbs2; 491c2760754SSatish Balay if (row >= rstart && row < rend) { 4920bdbc534SSatish Balay for (j=0; j<n; j++) { 4930bdbc534SSatish Balay col = in[j]; 4940bdbc534SSatish Balay 4950bdbc534SSatish Balay /* Look up into the Hash Table */ 496c2760754SSatish Balay key = row*Nbs+col+1; 497c2760754SSatish Balay h1 = HASH(size,key,tmp); 4980bdbc534SSatish Balay 499c2760754SSatish Balay idx = h1; 5002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 501187ce0cbSSatish Balay total_ct++; 502187ce0cbSSatish Balay insert_ct++; 503187ce0cbSSatish Balay if (HT[idx] != key) { 504187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 505187ce0cbSSatish Balay if (idx == size) { 506187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 507f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 508187ce0cbSSatish Balay } 509187ce0cbSSatish Balay } 510187ce0cbSSatish Balay #else 511c2760754SSatish Balay if (HT[idx] != key) { 512c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 513c2760754SSatish Balay if (idx == size) { 514c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 515f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 516c2760754SSatish Balay } 517c2760754SSatish Balay } 518187ce0cbSSatish Balay #endif 519c2760754SSatish Balay baij_a = HD[idx]; 5200bdbc534SSatish Balay if (roworiented) { 521c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 522187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 523187ce0cbSSatish Balay value = v_t; 524187ce0cbSSatish Balay v_t += bs; 525fef45726SSatish Balay if (addv == ADD_VALUES) { 526c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 527c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 528fef45726SSatish Balay baij_a[jj] += *value++; 529b4cc0f5aSSatish Balay } 530b4cc0f5aSSatish Balay } 531fef45726SSatish Balay } else { 532c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 533c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 534fef45726SSatish Balay baij_a[jj] = *value++; 535fef45726SSatish Balay } 536fef45726SSatish Balay } 537fef45726SSatish Balay } 5380bdbc534SSatish Balay } else { 5390bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 540fef45726SSatish Balay if (addv == ADD_VALUES) { 541b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5420bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 543fef45726SSatish Balay baij_a[jj] += *value++; 544fef45726SSatish Balay } 545fef45726SSatish Balay } 546fef45726SSatish Balay } else { 547fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 548fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 549fef45726SSatish Balay baij_a[jj] = *value++; 550fef45726SSatish Balay } 551b4cc0f5aSSatish Balay } 5520bdbc534SSatish Balay } 5530bdbc534SSatish Balay } 5540bdbc534SSatish Balay } 5550bdbc534SSatish Balay } else { 5560bdbc534SSatish Balay if (!baij->donotstash) { 5570bdbc534SSatish Balay if (roworiented) { 5588798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5590bdbc534SSatish Balay } else { 5608798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5610bdbc534SSatish Balay } 5620bdbc534SSatish Balay } 5630bdbc534SSatish Balay } 5640bdbc534SSatish Balay } 5652515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 566187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 567187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 568187ce0cbSSatish Balay #endif 5690bdbc534SSatish Balay PetscFunctionReturn(0); 5700bdbc534SSatish Balay } 571133cdb44SSatish Balay 5724a2ae208SSatish Balay #undef __FUNCT__ 5734a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 574b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 575d6de1c52SSatish Balay { 576d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5776849ba73SBarry Smith PetscErrorCode ierr; 578d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 579d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 580d6de1c52SSatish Balay 581133cdb44SSatish Balay PetscFunctionBegin; 582d6de1c52SSatish Balay for (i=0; i<m; i++) { 583e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 584e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 585d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 586d6de1c52SSatish Balay row = idxm[i] - bsrstart; 587d6de1c52SSatish Balay for (j=0; j<n; j++) { 588e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 589e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 590d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 591d6de1c52SSatish Balay col = idxn[j] - bscstart; 59298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 593d64ed03dSBarry Smith } else { 594905e6a2fSBarry Smith if (!baij->colmap) { 595ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 596905e6a2fSBarry Smith } 597aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5980f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 599fa46199cSSatish Balay data --; 60048e59246SSatish Balay #else 60148e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60248e59246SSatish Balay #endif 60348e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 604d9d09a02SSatish Balay else { 60548e59246SSatish Balay col = data + idxn[j]%bs; 60698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 607d6de1c52SSatish Balay } 608d6de1c52SSatish Balay } 609d6de1c52SSatish Balay } 610f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 611d6de1c52SSatish Balay } 6123a40ed3dSBarry Smith PetscFunctionReturn(0); 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay 6154a2ae208SSatish Balay #undef __FUNCT__ 6164a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 617dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 618d6de1c52SSatish Balay { 619d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 620d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 621dfbe8321SBarry Smith PetscErrorCode ierr; 622d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 623329f5518SBarry Smith PetscReal sum = 0.0; 6243eda8832SBarry Smith MatScalar *v; 625d6de1c52SSatish Balay 626d64ed03dSBarry Smith PetscFunctionBegin; 627d6de1c52SSatish Balay if (baij->size == 1) { 628064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 629d6de1c52SSatish Balay } else { 630d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 631d6de1c52SSatish Balay v = amat->a; 6328a62d963SHong Zhang nz = amat->nz*bs2; 6338a62d963SHong Zhang for (i=0; i<nz; i++) { 634329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 635d6de1c52SSatish Balay } 636d6de1c52SSatish Balay v = bmat->a; 6378a62d963SHong Zhang nz = bmat->nz*bs2; 6388a62d963SHong Zhang for (i=0; i<nz; i++) { 639329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 640d6de1c52SSatish Balay } 641d9822059SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6428f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6438a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6448a62d963SHong Zhang PetscReal *tmp,*tmp2; 645899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 646fca92195SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr); 647d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6488a62d963SHong Zhang v = amat->a; jj = amat->j; 6498a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6508a62d963SHong Zhang for (j=0; j<bs; j++) { 6518a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6528a62d963SHong Zhang for (row=0; row<bs; row++) { 6538a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6548a62d963SHong Zhang } 6558a62d963SHong Zhang } 6568a62d963SHong Zhang jj++; 6578a62d963SHong Zhang } 6588a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6598a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6608a62d963SHong Zhang for (j=0; j<bs; j++) { 6618a62d963SHong Zhang col = bs*garray[*jj] + j; 6628a62d963SHong Zhang for (row=0; row<bs; row++) { 6638a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6648a62d963SHong Zhang } 6658a62d963SHong Zhang } 6668a62d963SHong Zhang jj++; 6678a62d963SHong Zhang } 668d9822059SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6698a62d963SHong Zhang *nrm = 0.0; 670d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6718a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6728a62d963SHong Zhang } 673fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6748a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 675577dd1f9SKris Buschelman PetscReal *sums; 676cb9801acSJed Brown ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr); 6778a62d963SHong Zhang sum = 0.0; 6788a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6798a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6808a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6818a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6828a62d963SHong Zhang for (i=0; i<nz; i++) { 6838a62d963SHong Zhang for (col=0; col<bs; col++) { 6848a62d963SHong Zhang for (row=0; row<bs; row++) { 6858a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6868a62d963SHong Zhang } 6878a62d963SHong Zhang } 6888a62d963SHong Zhang } 6898a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 6908a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 6918a62d963SHong Zhang for (i=0; i<nz; i++) { 6928a62d963SHong Zhang for (col=0; col<bs; col++) { 6938a62d963SHong Zhang for (row=0; row<bs; row++) { 6948a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6958a62d963SHong Zhang } 6968a62d963SHong Zhang } 6978a62d963SHong Zhang } 6988a62d963SHong Zhang for (row=0; row<bs; row++) { 6998a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7008a62d963SHong Zhang } 7018a62d963SHong Zhang } 702d9822059SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 703577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 704e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet"); 705d64ed03dSBarry Smith } 7063a40ed3dSBarry Smith PetscFunctionReturn(0); 707d6de1c52SSatish Balay } 70857b952d6SSatish Balay 709fef45726SSatish Balay /* 710fef45726SSatish Balay Creates the hash table, and sets the table 711fef45726SSatish Balay This table is created only once. 712fef45726SSatish Balay If new entried need to be added to the matrix 713fef45726SSatish Balay then the hash table has to be destroyed and 714fef45726SSatish Balay recreated. 715fef45726SSatish Balay */ 7164a2ae208SSatish Balay #undef __FUNCT__ 7174a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 718dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 719596b8d2eSBarry Smith { 720596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 721596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 722596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 723b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7246849ba73SBarry Smith PetscErrorCode ierr; 725fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 726899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 727b24ad042SBarry Smith PetscInt *HT,key; 7283eda8832SBarry Smith MatScalar **HD; 729329f5518SBarry Smith PetscReal tmp; 7306cf91177SBarry Smith #if defined(PETSC_USE_INFO) 731b24ad042SBarry Smith PetscInt ct=0,max=0; 7324a15367fSSatish Balay #endif 733fef45726SSatish Balay 734d64ed03dSBarry Smith PetscFunctionBegin; 735fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 736fef45726SSatish Balay 737fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 738fca92195SBarry Smith ht_size = baij->ht_size; 7390bdbc534SSatish Balay 740fef45726SSatish Balay /* Allocate Memory for Hash Table */ 741fca92195SBarry Smith ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr); 742fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 743fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 744b9e4cc15SSatish Balay HD = baij->hd; 745a07cd24cSSatish Balay HT = baij->ht; 746b9e4cc15SSatish Balay 747596b8d2eSBarry Smith /* Loop Over A */ 7480bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 749596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7500bdbc534SSatish Balay row = i+rstart; 7510bdbc534SSatish Balay col = aj[j]+cstart; 752596b8d2eSBarry Smith 753187ce0cbSSatish Balay key = row*Nbs + col + 1; 754fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 755fca92195SBarry Smith for (k=0; k<ht_size; k++) { 756fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 757fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 758fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 759596b8d2eSBarry Smith break; 7606cf91177SBarry Smith #if defined(PETSC_USE_INFO) 761187ce0cbSSatish Balay } else { 762187ce0cbSSatish Balay ct++; 763187ce0cbSSatish Balay #endif 764596b8d2eSBarry Smith } 765187ce0cbSSatish Balay } 7666cf91177SBarry Smith #if defined(PETSC_USE_INFO) 767187ce0cbSSatish Balay if (k> max) max = k; 768187ce0cbSSatish Balay #endif 769596b8d2eSBarry Smith } 770596b8d2eSBarry Smith } 771596b8d2eSBarry Smith /* Loop Over B */ 7720bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 773596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7740bdbc534SSatish Balay row = i+rstart; 7750bdbc534SSatish Balay col = garray[bj[j]]; 776187ce0cbSSatish Balay key = row*Nbs + col + 1; 777fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 778fca92195SBarry Smith for (k=0; k<ht_size; k++) { 779fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 780fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 781fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 782596b8d2eSBarry Smith break; 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay } else { 785187ce0cbSSatish Balay ct++; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788187ce0cbSSatish Balay } 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay if (k> max) max = k; 791187ce0cbSSatish Balay #endif 792596b8d2eSBarry Smith } 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith 795596b8d2eSBarry Smith /* Print Summary */ 7966cf91177SBarry Smith #if defined(PETSC_USE_INFO) 797fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 798596b8d2eSBarry Smith if (HT[i]) {j++;} 799c38d4ed2SBarry Smith } 8001e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 801187ce0cbSSatish Balay #endif 8023a40ed3dSBarry Smith PetscFunctionReturn(0); 803596b8d2eSBarry Smith } 80457b952d6SSatish Balay 8054a2ae208SSatish Balay #undef __FUNCT__ 8064a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 807dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 808bbb85fb3SSatish Balay { 809bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 810dfbe8321SBarry Smith PetscErrorCode ierr; 811b24ad042SBarry Smith PetscInt nstash,reallocs; 812bbb85fb3SSatish Balay InsertMode addv; 813bbb85fb3SSatish Balay 814bbb85fb3SSatish Balay PetscFunctionBegin; 8154cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 816bbb85fb3SSatish Balay PetscFunctionReturn(0); 817bbb85fb3SSatish Balay } 818bbb85fb3SSatish Balay 819bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8208ad47952SJed Brown ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 821e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 822bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 823bbb85fb3SSatish Balay 824d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8251e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8268798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8271e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 82846680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8291e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 830bbb85fb3SSatish Balay PetscFunctionReturn(0); 831bbb85fb3SSatish Balay } 832bbb85fb3SSatish Balay 8334a2ae208SSatish Balay #undef __FUNCT__ 8344a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 835dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 836bbb85fb3SSatish Balay { 837bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 83891c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8396849ba73SBarry Smith PetscErrorCode ierr; 840b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 841e44c0bd4SBarry Smith PetscInt *row,*col; 842ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8433eda8832SBarry Smith MatScalar *val; 844bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 845b24ad042SBarry Smith PetscMPIInt n; 846bbb85fb3SSatish Balay 84791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 848bbb85fb3SSatish Balay PetscFunctionBegin; 8494cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 850a2d1c673SSatish Balay while (1) { 8518798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 852a2d1c673SSatish Balay if (!flg) break; 853a2d1c673SSatish Balay 854bbb85fb3SSatish Balay for (i=0; i<n;) { 855bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 856bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 857bbb85fb3SSatish Balay if (j < n) ncols = j-i; 858bbb85fb3SSatish Balay else ncols = n-i; 859bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 86097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 861bbb85fb3SSatish Balay i = j; 862bbb85fb3SSatish Balay } 863bbb85fb3SSatish Balay } 8648798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 865a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 866a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 867a2d1c673SSatish Balay restore the original flags */ 868a2d1c673SSatish Balay r1 = baij->roworiented; 869a2d1c673SSatish Balay r2 = a->roworiented; 87091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8717c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8727c922b88SBarry Smith a->roworiented = PETSC_FALSE; 87391c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 874a2d1c673SSatish Balay while (1) { 8758798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 876a2d1c673SSatish Balay if (!flg) break; 877a2d1c673SSatish Balay 878a2d1c673SSatish Balay for (i=0; i<n;) { 879a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 880a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 881a2d1c673SSatish Balay if (j < n) ncols = j-i; 882a2d1c673SSatish Balay else ncols = n-i; 88397e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 884a2d1c673SSatish Balay i = j; 885a2d1c673SSatish Balay } 886a2d1c673SSatish Balay } 8878798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 888a2d1c673SSatish Balay baij->roworiented = r1; 889a2d1c673SSatish Balay a->roworiented = r2; 89091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 891bbb85fb3SSatish Balay } 892bbb85fb3SSatish Balay 893bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 894bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 895bbb85fb3SSatish Balay 896bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 897bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 898bbb85fb3SSatish Balay /* 899bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 900bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 901bbb85fb3SSatish Balay */ 902bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 903c3aae356SJed Brown ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 904bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 905ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 906bbb85fb3SSatish Balay } 907bbb85fb3SSatish Balay } 908bbb85fb3SSatish Balay 909bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 910bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 911bbb85fb3SSatish Balay } 9124e35b6f3SSatish Balay ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_FALSE);CHKERRQ(ierr); 913bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 914bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 915bbb85fb3SSatish Balay 9166cf91177SBarry Smith #if defined(PETSC_USE_INFO) 917bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9181e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 919bbb85fb3SSatish Balay baij->ht_total_ct = 0; 920bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 921bbb85fb3SSatish Balay } 922bbb85fb3SSatish Balay #endif 923bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 924bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 925bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 926bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 927bbb85fb3SSatish Balay } 928bbb85fb3SSatish Balay 929fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 930606d414cSSatish Balay baij->rowvalues = 0; 931bbb85fb3SSatish Balay PetscFunctionReturn(0); 932bbb85fb3SSatish Balay } 93357b952d6SSatish Balay 9344a2ae208SSatish Balay #undef __FUNCT__ 9354a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9366849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 93757b952d6SSatish Balay { 93857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 941d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 942ace3abfcSBarry Smith PetscBool iascii,isdraw; 943b0a32e0cSBarry Smith PetscViewer sviewer; 944f3ef73ceSBarry Smith PetscViewerFormat format; 94557b952d6SSatish Balay 946d64ed03dSBarry Smith PetscFunctionBegin; 947251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 948251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 94932077d6dSBarry Smith if (iascii) { 950b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 951456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9524e220ebcSLois Curfman McInnes MatInfo info; 9537adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 954d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9557b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 95677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 95716608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 958d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 959e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 960d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 961e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 962b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9637b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 96407d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 96557b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9663a40ed3dSBarry Smith PetscFunctionReturn(0); 967fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 96877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9693a40ed3dSBarry Smith PetscFunctionReturn(0); 97004929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 97104929863SHong Zhang PetscFunctionReturn(0); 97257b952d6SSatish Balay } 97357b952d6SSatish Balay } 97457b952d6SSatish Balay 9750f5bd95cSBarry Smith if (isdraw) { 976b0a32e0cSBarry Smith PetscDraw draw; 977ace3abfcSBarry Smith PetscBool isnull; 978b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 979b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 98057b952d6SSatish Balay } 98157b952d6SSatish Balay 98257b952d6SSatish Balay if (size == 1) { 9837adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 98457b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 985d64ed03dSBarry Smith } else { 98657b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 98757b952d6SSatish Balay Mat A; 98857b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 989d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 9903eda8832SBarry Smith MatScalar *a; 99157b952d6SSatish Balay 992f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 993f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 9947adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 99557b952d6SSatish Balay if (!rank) { 996f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 997d64ed03dSBarry Smith } else { 998f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 99957b952d6SSatish Balay } 1000f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1001d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 10022b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 100352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 100457b952d6SSatish Balay 100557b952d6SSatish Balay /* copy over the A part */ 100657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 100757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1008b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 100957b952d6SSatish Balay 101057b952d6SSatish Balay for (i=0; i<mbs; i++) { 1011899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 101257b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 101357b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1014899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 101557b952d6SSatish Balay for (k=0; k<bs; k++) { 101697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1017cee3aa6bSSatish Balay col++; a += bs; 101857b952d6SSatish Balay } 101957b952d6SSatish Balay } 102057b952d6SSatish Balay } 102157b952d6SSatish Balay /* copy over the B part */ 102257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 102357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 102457b952d6SSatish Balay for (i=0; i<mbs; i++) { 1025899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 102657b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 102757b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 102857b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 102957b952d6SSatish Balay for (k=0; k<bs; k++) { 103097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1031cee3aa6bSSatish Balay col++; a += bs; 103257b952d6SSatish Balay } 103357b952d6SSatish Balay } 103457b952d6SSatish Balay } 1035606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10366d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10376d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 103855843e3eSBarry Smith /* 103955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1040b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 104155843e3eSBarry Smith */ 1042b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1043f14a1c24SBarry Smith if (!rank) { 10447adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10457566de4bSShri Abhyankar /* Set the type name to MATMPIBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqBAIJ_ASCII()*/ 10467566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPIBAIJ*)(A->data))->A)->type_name,MATMPIBAIJ); 10476831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 104857b952d6SSatish Balay } 1049b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 10506bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 105157b952d6SSatish Balay } 10523a40ed3dSBarry Smith PetscFunctionReturn(0); 105357b952d6SSatish Balay } 105457b952d6SSatish Balay 10554a2ae208SSatish Balay #undef __FUNCT__ 1056660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary" 1057660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1058660746e0SBarry Smith { 1059660746e0SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 1060660746e0SBarry Smith Mat_SeqBAIJ* A = (Mat_SeqBAIJ*)a->A->data; 1061660746e0SBarry Smith Mat_SeqBAIJ* B = (Mat_SeqBAIJ*)a->B->data; 1062660746e0SBarry Smith PetscErrorCode ierr; 10635f48b12bSBarry Smith PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 1064e96a6426SSatish Balay PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 1065660746e0SBarry Smith int fd; 1066660746e0SBarry Smith PetscScalar *column_values; 1067660746e0SBarry Smith FILE *file; 1068660746e0SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1069638eb2ebSBarry Smith PetscInt message_count,flowcontrolcount; 1070660746e0SBarry Smith 1071660746e0SBarry Smith PetscFunctionBegin; 1072660746e0SBarry Smith ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 1073660746e0SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 1074660746e0SBarry Smith nz = bs2*(A->nz + B->nz); 1075660746e0SBarry Smith rlen = mat->rmap->n; 1076660746e0SBarry Smith if (!rank) { 1077660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1078660746e0SBarry Smith header[1] = mat->rmap->N; 1079660746e0SBarry Smith header[2] = mat->cmap->N; 1080660746e0SBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,((PetscObject)mat)->comm);CHKERRQ(ierr); 1081660746e0SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1082660746e0SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1083660746e0SBarry Smith /* get largest number of rows any processor has */ 1084660746e0SBarry Smith range = mat->rmap->range; 1085660746e0SBarry Smith for (i=1; i<size; i++) { 1086660746e0SBarry Smith rlen = PetscMax(rlen,range[i+1] - range[i]); 1087660746e0SBarry Smith } 1088660746e0SBarry Smith } else { 1089660746e0SBarry Smith ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,((PetscObject)mat)->comm);CHKERRQ(ierr); 1090660746e0SBarry Smith } 1091660746e0SBarry Smith 1092660746e0SBarry Smith ierr = PetscMalloc((rlen/bs)*sizeof(PetscInt),&crow_lens);CHKERRQ(ierr); 1093660746e0SBarry Smith /* compute lengths of each row */ 1094660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1095660746e0SBarry Smith crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1096660746e0SBarry Smith } 1097660746e0SBarry Smith /* store the row lengths to the file */ 1098638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1099660746e0SBarry Smith if (!rank) { 1100660746e0SBarry Smith MPI_Status status; 1101660746e0SBarry Smith ierr = PetscMalloc(rlen*sizeof(PetscInt),&row_lens);CHKERRQ(ierr); 1102660746e0SBarry Smith rlen = (range[1] - range[0])/bs; 1103660746e0SBarry Smith for (i=0; i<rlen; i++) { 1104660746e0SBarry Smith for (j=0; j<bs; j++) { 1105660746e0SBarry Smith row_lens[i*bs+j] = bs*crow_lens[i]; 1106660746e0SBarry Smith } 1107660746e0SBarry Smith } 1108660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1109660746e0SBarry Smith for (i=1; i<size; i++) { 1110660746e0SBarry Smith rlen = (range[i+1] - range[i])/bs; 1111639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1112660746e0SBarry Smith ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1113660746e0SBarry Smith for (k=0; k<rlen; k++) { 1114660746e0SBarry Smith for (j=0; j<bs; j++) { 1115660746e0SBarry Smith row_lens[k*bs+j] = bs*crow_lens[k]; 1116660746e0SBarry Smith } 1117660746e0SBarry Smith } 1118660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1119660746e0SBarry Smith } 1120639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1121660746e0SBarry Smith ierr = PetscFree(row_lens);CHKERRQ(ierr); 1122660746e0SBarry Smith } else { 1123639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1124660746e0SBarry Smith ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1125639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1126660746e0SBarry Smith } 1127660746e0SBarry Smith ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1128660746e0SBarry Smith 1129660746e0SBarry Smith /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1130660746e0SBarry Smith information needed to make it for each row from a block row. This does require more communication but still not more than 1131660746e0SBarry Smith the communication needed for the nonzero values */ 1132660746e0SBarry Smith nzmax = nz; /* space a largest processor needs */ 1133660746e0SBarry Smith ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,((PetscObject)mat)->comm);CHKERRQ(ierr); 1134660746e0SBarry Smith ierr = PetscMalloc(nzmax*sizeof(PetscInt),&column_indices);CHKERRQ(ierr); 1135660746e0SBarry Smith cnt = 0; 1136660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1137660746e0SBarry Smith pcnt = cnt; 1138660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1139660746e0SBarry Smith if ((col = garray[B->j[j]]) > cstart) break; 1140660746e0SBarry Smith for (l=0; l<bs; l++) { 1141660746e0SBarry Smith column_indices[cnt++] = bs*col+l; 1142660746e0SBarry Smith } 1143660746e0SBarry Smith } 1144660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1145660746e0SBarry Smith for (l=0; l<bs; l++) { 1146660746e0SBarry Smith column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1147660746e0SBarry Smith } 1148660746e0SBarry Smith } 1149660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1150660746e0SBarry Smith for (l=0; l<bs; l++) { 1151660746e0SBarry Smith column_indices[cnt++] = bs*garray[B->j[j]]+l; 1152660746e0SBarry Smith } 1153660746e0SBarry Smith } 1154660746e0SBarry Smith len = cnt - pcnt; 1155660746e0SBarry Smith for (k=1; k<bs; k++) { 1156660746e0SBarry Smith ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1157660746e0SBarry Smith cnt += len; 1158660746e0SBarry Smith } 1159660746e0SBarry Smith } 1160660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1161660746e0SBarry Smith 1162660746e0SBarry Smith /* store the columns to the file */ 1163638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1164660746e0SBarry Smith if (!rank) { 1165660746e0SBarry Smith MPI_Status status; 1166660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1167660746e0SBarry Smith for (i=1; i<size; i++) { 1168639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1169660746e0SBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1170660746e0SBarry Smith ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1171660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1172660746e0SBarry Smith } 1173639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1174660746e0SBarry Smith } else { 1175639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1176660746e0SBarry Smith ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1177660746e0SBarry Smith ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1178639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1179660746e0SBarry Smith } 1180660746e0SBarry Smith ierr = PetscFree(column_indices);CHKERRQ(ierr); 1181660746e0SBarry Smith 1182660746e0SBarry Smith /* load up the numerical values */ 1183660746e0SBarry Smith ierr = PetscMalloc(nzmax*sizeof(PetscScalar),&column_values);CHKERRQ(ierr); 1184660746e0SBarry Smith cnt = 0; 1185660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1186660746e0SBarry Smith rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1187660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1188660746e0SBarry Smith if (garray[B->j[j]] > cstart) break; 1189660746e0SBarry Smith for (l=0; l<bs; l++) { 1190660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1191660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1192660746e0SBarry Smith } 1193660746e0SBarry Smith } 1194660746e0SBarry Smith cnt += bs; 1195660746e0SBarry Smith } 1196660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1197660746e0SBarry Smith for (l=0; l<bs; l++) { 1198660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1199660746e0SBarry Smith column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1200660746e0SBarry Smith } 1201660746e0SBarry Smith } 1202660746e0SBarry Smith cnt += bs; 1203660746e0SBarry Smith } 1204660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1205660746e0SBarry Smith for (l=0; l<bs; l++) { 1206660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1207660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1208660746e0SBarry Smith } 1209660746e0SBarry Smith } 1210660746e0SBarry Smith cnt += bs; 1211660746e0SBarry Smith } 1212660746e0SBarry Smith cnt += (bs-1)*rlen; 1213660746e0SBarry Smith } 1214660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1215660746e0SBarry Smith 1216660746e0SBarry Smith /* store the column values to the file */ 1217638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1218660746e0SBarry Smith if (!rank) { 1219660746e0SBarry Smith MPI_Status status; 1220660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1221660746e0SBarry Smith for (i=1; i<size; i++) { 1222639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1223660746e0SBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1224660746e0SBarry Smith ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1225660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1226660746e0SBarry Smith } 1227639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1228660746e0SBarry Smith } else { 1229639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1230660746e0SBarry Smith ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1231660746e0SBarry Smith ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1232639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1233660746e0SBarry Smith } 1234660746e0SBarry Smith ierr = PetscFree(column_values);CHKERRQ(ierr); 1235660746e0SBarry Smith 1236660746e0SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1237660746e0SBarry Smith if (file) { 1238660746e0SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1239660746e0SBarry Smith } 1240660746e0SBarry Smith PetscFunctionReturn(0); 1241660746e0SBarry Smith } 1242660746e0SBarry Smith 1243660746e0SBarry Smith #undef __FUNCT__ 12444a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1245dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 124657b952d6SSatish Balay { 1247dfbe8321SBarry Smith PetscErrorCode ierr; 1248ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 124957b952d6SSatish Balay 1250d64ed03dSBarry Smith PetscFunctionBegin; 1251251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1252251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1253251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1254251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1255660746e0SBarry Smith if (iascii || isdraw || issocket) { 12567b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1257660746e0SBarry Smith } else if (isbinary) { 1258660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 125957b952d6SSatish Balay } 12603a40ed3dSBarry Smith PetscFunctionReturn(0); 126157b952d6SSatish Balay } 126257b952d6SSatish Balay 12634a2ae208SSatish Balay #undef __FUNCT__ 12644a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1265dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 126679bdfe76SSatish Balay { 126779bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1268dfbe8321SBarry Smith PetscErrorCode ierr; 126979bdfe76SSatish Balay 1270d64ed03dSBarry Smith PetscFunctionBegin; 1271aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1272d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 127379bdfe76SSatish Balay #endif 12748798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12758798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12766bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12776bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1278aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12796bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 128048e59246SSatish Balay #else 128105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 128248e59246SSatish Balay #endif 128305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12846bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12856bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1286fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 128705b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1288fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1289899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1290bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1291901853e0SKris Buschelman 1292dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1293901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1294901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1295901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1296901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1297aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1298901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1299901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 1300ad5247fdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C","",PETSC_NULL);CHKERRQ(ierr); 1301c0cdd4a1SDahai Guo ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C","",PETSC_NULL);CHKERRQ(ierr); 13023a40ed3dSBarry Smith PetscFunctionReturn(0); 130379bdfe76SSatish Balay } 130479bdfe76SSatish Balay 13054a2ae208SSatish Balay #undef __FUNCT__ 13064a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1307dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1308cee3aa6bSSatish Balay { 1309cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1310dfbe8321SBarry Smith PetscErrorCode ierr; 1311b24ad042SBarry Smith PetscInt nt; 1312cee3aa6bSSatish Balay 1313d64ed03dSBarry Smith PetscFunctionBegin; 1314e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1315e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1316e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1317e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1318ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1319f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1320ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1321f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 13223a40ed3dSBarry Smith PetscFunctionReturn(0); 1323cee3aa6bSSatish Balay } 1324cee3aa6bSSatish Balay 13254a2ae208SSatish Balay #undef __FUNCT__ 13264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1327dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1328cee3aa6bSSatish Balay { 1329cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1330dfbe8321SBarry Smith PetscErrorCode ierr; 1331d64ed03dSBarry Smith 1332d64ed03dSBarry Smith PetscFunctionBegin; 1333ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1334f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1335ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1336f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13373a40ed3dSBarry Smith PetscFunctionReturn(0); 1338cee3aa6bSSatish Balay } 1339cee3aa6bSSatish Balay 13404a2ae208SSatish Balay #undef __FUNCT__ 13414a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1342dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1343cee3aa6bSSatish Balay { 1344cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1345dfbe8321SBarry Smith PetscErrorCode ierr; 1346ace3abfcSBarry Smith PetscBool merged; 1347cee3aa6bSSatish Balay 1348d64ed03dSBarry Smith PetscFunctionBegin; 1349a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1350cee3aa6bSSatish Balay /* do nondiagonal part */ 13517c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1352a5ff213dSBarry Smith if (!merged) { 1353cee3aa6bSSatish Balay /* send it on its way */ 1354ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1355cee3aa6bSSatish Balay /* do local part */ 13567c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1357cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1358a5ff213dSBarry Smith /* inserted in yy until the next line */ 1359ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1360a5ff213dSBarry Smith } else { 1361a5ff213dSBarry Smith /* do local part */ 1362a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1363a5ff213dSBarry Smith /* send it on its way */ 1364ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1365a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1366ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1367a5ff213dSBarry Smith } 13683a40ed3dSBarry Smith PetscFunctionReturn(0); 1369cee3aa6bSSatish Balay } 1370cee3aa6bSSatish Balay 13714a2ae208SSatish Balay #undef __FUNCT__ 13724a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1373dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1374cee3aa6bSSatish Balay { 1375cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1376dfbe8321SBarry Smith PetscErrorCode ierr; 1377cee3aa6bSSatish Balay 1378d64ed03dSBarry Smith PetscFunctionBegin; 1379cee3aa6bSSatish Balay /* do nondiagonal part */ 13807c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1381cee3aa6bSSatish Balay /* send it on its way */ 1382ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1383cee3aa6bSSatish Balay /* do local part */ 13847c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1385cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1386cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1387cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1388ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 13893a40ed3dSBarry Smith PetscFunctionReturn(0); 1390cee3aa6bSSatish Balay } 1391cee3aa6bSSatish Balay 1392cee3aa6bSSatish Balay /* 1393cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1394cee3aa6bSSatish Balay diagonal block 1395cee3aa6bSSatish Balay */ 13964a2ae208SSatish Balay #undef __FUNCT__ 13974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1398dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1399cee3aa6bSSatish Balay { 1400cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1401dfbe8321SBarry Smith PetscErrorCode ierr; 1402d64ed03dSBarry Smith 1403d64ed03dSBarry Smith PetscFunctionBegin; 1404e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 14053a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 14063a40ed3dSBarry Smith PetscFunctionReturn(0); 1407cee3aa6bSSatish Balay } 1408cee3aa6bSSatish Balay 14094a2ae208SSatish Balay #undef __FUNCT__ 14104a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1411f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1412cee3aa6bSSatish Balay { 1413cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1414dfbe8321SBarry Smith PetscErrorCode ierr; 1415d64ed03dSBarry Smith 1416d64ed03dSBarry Smith PetscFunctionBegin; 1417f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1418f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 14193a40ed3dSBarry Smith PetscFunctionReturn(0); 1420cee3aa6bSSatish Balay } 1421026e39d0SSatish Balay 14224a2ae208SSatish Balay #undef __FUNCT__ 14234a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1424b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1425acdf5bf4SSatish Balay { 1426acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 142787828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 14286849ba73SBarry Smith PetscErrorCode ierr; 1429d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1430d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1431899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1432acdf5bf4SSatish Balay 1433d64ed03dSBarry Smith PetscFunctionBegin; 1434e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1435e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1436acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1437acdf5bf4SSatish Balay 1438acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1439acdf5bf4SSatish Balay /* 1440acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1441acdf5bf4SSatish Balay */ 1442acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1443b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1444bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1445acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1446acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1447acdf5bf4SSatish Balay } 1448fca92195SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1449acdf5bf4SSatish Balay } 1450d9d09a02SSatish Balay lrow = row - brstart; 1451acdf5bf4SSatish Balay 1452acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1453acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1454acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1455f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1456f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1457acdf5bf4SSatish Balay nztot = nzA + nzB; 1458acdf5bf4SSatish Balay 1459acdf5bf4SSatish Balay cmap = mat->garray; 1460acdf5bf4SSatish Balay if (v || idx) { 1461acdf5bf4SSatish Balay if (nztot) { 1462acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1463b24ad042SBarry Smith PetscInt imark = -1; 1464acdf5bf4SSatish Balay if (v) { 1465acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1466acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1467d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1468acdf5bf4SSatish Balay else break; 1469acdf5bf4SSatish Balay } 1470acdf5bf4SSatish Balay imark = i; 1471acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1472acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1473acdf5bf4SSatish Balay } 1474acdf5bf4SSatish Balay if (idx) { 1475acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1476acdf5bf4SSatish Balay if (imark > -1) { 1477acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1478bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1479acdf5bf4SSatish Balay } 1480acdf5bf4SSatish Balay } else { 1481acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1482d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1483d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1484acdf5bf4SSatish Balay else break; 1485acdf5bf4SSatish Balay } 1486acdf5bf4SSatish Balay imark = i; 1487acdf5bf4SSatish Balay } 1488d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1489d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1490acdf5bf4SSatish Balay } 1491d64ed03dSBarry Smith } else { 1492d212a18eSSatish Balay if (idx) *idx = 0; 1493d212a18eSSatish Balay if (v) *v = 0; 1494d212a18eSSatish Balay } 1495acdf5bf4SSatish Balay } 1496acdf5bf4SSatish Balay *nz = nztot; 1497f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1498f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14993a40ed3dSBarry Smith PetscFunctionReturn(0); 1500acdf5bf4SSatish Balay } 1501acdf5bf4SSatish Balay 15024a2ae208SSatish Balay #undef __FUNCT__ 15034a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1504b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1505acdf5bf4SSatish Balay { 1506acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1507d64ed03dSBarry Smith 1508d64ed03dSBarry Smith PetscFunctionBegin; 1509e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1510acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 15113a40ed3dSBarry Smith PetscFunctionReturn(0); 1512acdf5bf4SSatish Balay } 1513acdf5bf4SSatish Balay 15144a2ae208SSatish Balay #undef __FUNCT__ 15154a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1516dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 151758667388SSatish Balay { 151858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1519dfbe8321SBarry Smith PetscErrorCode ierr; 1520d64ed03dSBarry Smith 1521d64ed03dSBarry Smith PetscFunctionBegin; 152258667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 152358667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 15243a40ed3dSBarry Smith PetscFunctionReturn(0); 152558667388SSatish Balay } 15260ac07820SSatish Balay 15274a2ae208SSatish Balay #undef __FUNCT__ 15284a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1529dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 15300ac07820SSatish Balay { 15314e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 15324e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1533dfbe8321SBarry Smith PetscErrorCode ierr; 1534329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15350ac07820SSatish Balay 1536d64ed03dSBarry Smith PetscFunctionBegin; 1537d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 15384e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 15390e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1540de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 15414e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 15420e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1543de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 15440ac07820SSatish Balay if (flag == MAT_LOCAL) { 15454e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15464e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15474e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15484e220ebcSLois Curfman McInnes info->memory = isend[3]; 15494e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15500ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1551d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 15524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15570ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1558d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 15594e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15604e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15614e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15624e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15634e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1564f23aa3ddSBarry Smith } else SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15654e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15664e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15674e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15683a40ed3dSBarry Smith PetscFunctionReturn(0); 15690ac07820SSatish Balay } 15700ac07820SSatish Balay 15714a2ae208SSatish Balay #undef __FUNCT__ 15724a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1573ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 157458667388SSatish Balay { 157558667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1576dfbe8321SBarry Smith PetscErrorCode ierr; 157758667388SSatish Balay 1578d64ed03dSBarry Smith PetscFunctionBegin; 157912c028f9SKris Buschelman switch (op) { 1580512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 158112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 158228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1583a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 158412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 15854e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15864e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 158712c028f9SKris Buschelman break; 158812c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15894e0d8c25SBarry Smith a->roworiented = flg; 15904e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15914e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 159212c028f9SKris Buschelman break; 15934e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1594290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 159512c028f9SKris Buschelman break; 159612c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15974e0d8c25SBarry Smith a->donotstash = flg; 159812c028f9SKris Buschelman break; 159912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 16004e0d8c25SBarry Smith a->ht_flag = flg; 160112c028f9SKris Buschelman break; 160277e54ba9SKris Buschelman case MAT_SYMMETRIC: 160377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16042188ac68SBarry Smith case MAT_HERMITIAN: 16052188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 16064e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 160777e54ba9SKris Buschelman break; 160812c028f9SKris Buschelman default: 160965e19b50SBarry Smith SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op); 1610d64ed03dSBarry Smith } 16113a40ed3dSBarry Smith PetscFunctionReturn(0); 161258667388SSatish Balay } 161358667388SSatish Balay 16144a2ae208SSatish Balay #undef __FUNCT__ 16156a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ" 1616fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 16170ac07820SSatish Balay { 16180ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16190ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16200ac07820SSatish Balay Mat B; 1621dfbe8321SBarry Smith PetscErrorCode ierr; 1622d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1623d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 16243eda8832SBarry Smith MatScalar *a; 16250ac07820SSatish Balay 1626d64ed03dSBarry Smith PetscFunctionBegin; 1627e7e72b3dSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1628fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 16297adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1630d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 16317adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 16322e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 16332e72b8d9SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,PETSC_NULL,PETSC_DECIDE,PETSC_NULL);CHKERRQ(ierr); 1634fc4dec0aSBarry Smith } else { 1635fc4dec0aSBarry Smith B = *matout; 1636fc4dec0aSBarry Smith } 16370ac07820SSatish Balay 16380ac07820SSatish Balay /* copy over the A part */ 16390ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16400ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1641b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16420ac07820SSatish Balay 16430ac07820SSatish Balay for (i=0; i<mbs; i++) { 1644899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16450ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16460ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1647899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16480ac07820SSatish Balay for (k=0; k<bs; k++) { 164997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16500ac07820SSatish Balay col++; a += bs; 16510ac07820SSatish Balay } 16520ac07820SSatish Balay } 16530ac07820SSatish Balay } 16540ac07820SSatish Balay /* copy over the B part */ 16550ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16560ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16570ac07820SSatish Balay for (i=0; i<mbs; i++) { 1658899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16590ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16600ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16610ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16620ac07820SSatish Balay for (k=0; k<bs; k++) { 166397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16640ac07820SSatish Balay col++; a += bs; 16650ac07820SSatish Balay } 16660ac07820SSatish Balay } 16670ac07820SSatish Balay } 1668606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16690ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16700ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16710ac07820SSatish Balay 1672815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 16730ac07820SSatish Balay *matout = B; 16740ac07820SSatish Balay } else { 1675eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 16760ac07820SSatish Balay } 16773a40ed3dSBarry Smith PetscFunctionReturn(0); 16780ac07820SSatish Balay } 16790e95ebc0SSatish Balay 16804a2ae208SSatish Balay #undef __FUNCT__ 16814a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1682dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16830e95ebc0SSatish Balay { 168436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 168536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1686dfbe8321SBarry Smith PetscErrorCode ierr; 1687b24ad042SBarry Smith PetscInt s1,s2,s3; 16880e95ebc0SSatish Balay 1689d64ed03dSBarry Smith PetscFunctionBegin; 169036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 169136c4a09eSSatish Balay if (rr) { 169236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1693e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 169436c4a09eSSatish Balay /* Overlap communication with computation. */ 1695ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 169636c4a09eSSatish Balay } 16970e95ebc0SSatish Balay if (ll) { 16980e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1699e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1700a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 17010e95ebc0SSatish Balay } 170236c4a09eSSatish Balay /* scale the diagonal block */ 170336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 170436c4a09eSSatish Balay 170536c4a09eSSatish Balay if (rr) { 170636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1707ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1708a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 170936c4a09eSSatish Balay } 171036c4a09eSSatish Balay 17113a40ed3dSBarry Smith PetscFunctionReturn(0); 17120e95ebc0SSatish Balay } 17130e95ebc0SSatish Balay 17144a2ae208SSatish Balay #undef __FUNCT__ 17154a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 17162b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 17170ac07820SSatish Balay { 17180ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 17196849ba73SBarry Smith PetscErrorCode ierr; 1720b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1721d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1722b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1723b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 17247adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1725d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 17267adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 17270ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 17280ac07820SSatish Balay MPI_Status recv_status,*send_status; 172997b48c8fSBarry Smith const PetscScalar *xx; 173097b48c8fSBarry Smith PetscScalar *bb; 17316543fbbaSBarry Smith #if defined(PETSC_DEBUG) 1732ace3abfcSBarry Smith PetscBool found = PETSC_FALSE; 17336543fbbaSBarry Smith #endif 17340ac07820SSatish Balay 1735d64ed03dSBarry Smith PetscFunctionBegin; 17360ac07820SSatish Balay /* first count number of contributors to each processor */ 1737b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1738b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1739b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 17406543fbbaSBarry Smith j = 0; 17410ac07820SSatish Balay for (i=0; i<N; i++) { 17426543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 17436543fbbaSBarry Smith lastidx = idx; 17446543fbbaSBarry Smith for (; j<size; j++) { 1745357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 17466543fbbaSBarry Smith nprocs[2*j]++; 17476543fbbaSBarry Smith nprocs[2*j+1] = 1; 17486543fbbaSBarry Smith owner[i] = j; 17496543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17506543fbbaSBarry Smith found = PETSC_TRUE; 17516543fbbaSBarry Smith #endif 17526543fbbaSBarry Smith break; 17530ac07820SSatish Balay } 17540ac07820SSatish Balay } 17556543fbbaSBarry Smith #if defined(PETSC_DEBUG) 1756e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 17576543fbbaSBarry Smith found = PETSC_FALSE; 17586543fbbaSBarry Smith #endif 17590ac07820SSatish Balay } 1760c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 17610ac07820SSatish Balay 17627367270fSBarry Smith if (A->nooffproczerorows) { 17637367270fSBarry Smith if (nsends > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"You called MatSetOption(,MAT_NO_OFF_PROC_ZERO_ROWS,PETSC_TRUE) but set an off process zero row"); 17647367270fSBarry Smith nrecvs = nsends; 17657367270fSBarry Smith nmax = N; 17667367270fSBarry Smith } else { 17670ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1768c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 17697367270fSBarry Smith } 17700ac07820SSatish Balay 17710ac07820SSatish Balay /* post receives: */ 1772b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1773b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17740ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1775b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17760ac07820SSatish Balay } 17770ac07820SSatish Balay 17780ac07820SSatish Balay /* do sends: 17790ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17800ac07820SSatish Balay the ith processor 17810ac07820SSatish Balay */ 1782b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1783b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1784b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 17850ac07820SSatish Balay starts[0] = 0; 1786c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17870ac07820SSatish Balay for (i=0; i<N; i++) { 17880ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17890ac07820SSatish Balay } 17900ac07820SSatish Balay 17910ac07820SSatish Balay starts[0] = 0; 1792c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17930ac07820SSatish Balay count = 0; 17940ac07820SSatish Balay for (i=0; i<size; i++) { 1795c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1796b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17970ac07820SSatish Balay } 17980ac07820SSatish Balay } 1799606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 18000ac07820SSatish Balay 1801357c27ecSBarry Smith base = owners[rank]; 18020ac07820SSatish Balay 18030ac07820SSatish Balay /* wait on receives */ 1804fca92195SBarry Smith ierr = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr); 1805fca92195SBarry Smith count = nrecvs; 1806fca92195SBarry Smith slen = 0; 18070ac07820SSatish Balay while (count) { 1808ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 18090ac07820SSatish Balay /* unpack receives into our local space */ 1810b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 18110ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 18120ac07820SSatish Balay lens[imdex] = n; 18130ac07820SSatish Balay slen += n; 18140ac07820SSatish Balay count--; 18150ac07820SSatish Balay } 1816606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 18170ac07820SSatish Balay 18180ac07820SSatish Balay /* move the data into the send scatter */ 1819b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 18200ac07820SSatish Balay count = 0; 18210ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 18220ac07820SSatish Balay values = rvalues + i*nmax; 18230ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 18240ac07820SSatish Balay lrows[count++] = values[j] - base; 18250ac07820SSatish Balay } 18260ac07820SSatish Balay } 1827606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1828fca92195SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 1829606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1830606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 18310ac07820SSatish Balay 183297b48c8fSBarry Smith /* fix right hand side if needed */ 183397b48c8fSBarry Smith if (x && b) { 183497b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 183597b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 183697b48c8fSBarry Smith for (i=0; i<slen; i++) { 183797b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 183897b48c8fSBarry Smith } 183997b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 184097b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 184197b48c8fSBarry Smith } 184297b48c8fSBarry Smith 18430ac07820SSatish Balay /* actually zap the local rows */ 184472dacd9aSBarry Smith /* 184572dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1846a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 184772dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 184872dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 184972dacd9aSBarry Smith 185072dacd9aSBarry Smith */ 18519c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 18522b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0,0,0);CHKERRQ(ierr); 1853d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 18542b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag,0,0);CHKERRQ(ierr); 1855f4df32b1SMatthew Knepley } else if (diag != 0.0) { 18562b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 1857e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1858512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1859a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1860a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1861f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1862a07cd24cSSatish Balay } 1863a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1864a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18659c957beeSSatish Balay } else { 18662b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 1867a07cd24cSSatish Balay } 18689c957beeSSatish Balay 1869606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1870a07cd24cSSatish Balay 18710ac07820SSatish Balay /* wait on sends */ 18720ac07820SSatish Balay if (nsends) { 187382502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1874ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1875606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18760ac07820SSatish Balay } 1877606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1878606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18790ac07820SSatish Balay 18803a40ed3dSBarry Smith PetscFunctionReturn(0); 18810ac07820SSatish Balay } 188272dacd9aSBarry Smith 18834a2ae208SSatish Balay #undef __FUNCT__ 18844a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1885dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1886bb5a7306SBarry Smith { 1887bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1888dfbe8321SBarry Smith PetscErrorCode ierr; 1889d64ed03dSBarry Smith 1890d64ed03dSBarry Smith PetscFunctionBegin; 1891bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18923a40ed3dSBarry Smith PetscFunctionReturn(0); 1893bb5a7306SBarry Smith } 1894bb5a7306SBarry Smith 18956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18960ac07820SSatish Balay 18974a2ae208SSatish Balay #undef __FUNCT__ 18984a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1899ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 19007fc3c18eSBarry Smith { 19017fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 19027fc3c18eSBarry Smith Mat a,b,c,d; 1903ace3abfcSBarry Smith PetscBool flg; 1904dfbe8321SBarry Smith PetscErrorCode ierr; 19057fc3c18eSBarry Smith 19067fc3c18eSBarry Smith PetscFunctionBegin; 19077fc3c18eSBarry Smith a = matA->A; b = matA->B; 19087fc3c18eSBarry Smith c = matB->A; d = matB->B; 19097fc3c18eSBarry Smith 19107fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1911abc0a331SBarry Smith if (flg) { 19127fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 19137fc3c18eSBarry Smith } 1914c3aae356SJed Brown ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 19157fc3c18eSBarry Smith PetscFunctionReturn(0); 19167fc3c18eSBarry Smith } 19177fc3c18eSBarry Smith 19183c896bc6SHong Zhang #undef __FUNCT__ 19193c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 19203c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 19213c896bc6SHong Zhang { 19223c896bc6SHong Zhang PetscErrorCode ierr; 19233c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 19243c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 19253c896bc6SHong Zhang 19263c896bc6SHong Zhang PetscFunctionBegin; 19273c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 19283c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 19293c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 19303c896bc6SHong Zhang } else { 19313c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 19323c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 19333c896bc6SHong Zhang } 19343c896bc6SHong Zhang PetscFunctionReturn(0); 19353c896bc6SHong Zhang } 1936273d9f13SBarry Smith 19374a2ae208SSatish Balay #undef __FUNCT__ 19384994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ" 19394994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1940273d9f13SBarry Smith { 1941dfbe8321SBarry Smith PetscErrorCode ierr; 1942273d9f13SBarry Smith 1943273d9f13SBarry Smith PetscFunctionBegin; 1944535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1945273d9f13SBarry Smith PetscFunctionReturn(0); 1946273d9f13SBarry Smith } 1947273d9f13SBarry Smith 19484fe895cdSHong Zhang #undef __FUNCT__ 19494fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 19504fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19514fe895cdSHong Zhang { 19524fe895cdSHong Zhang PetscErrorCode ierr; 19534fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 19544fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19554fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 19564fe895cdSHong Zhang 19574fe895cdSHong Zhang PetscFunctionBegin; 19584fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19594fe895cdSHong Zhang PetscScalar alpha = a; 19604fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 19614fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 1962*c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 19634fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19644fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 19654fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 1966*c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 19674fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19684fe895cdSHong Zhang } else { 19694fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 19704fe895cdSHong Zhang } 19714fe895cdSHong Zhang PetscFunctionReturn(0); 19724fe895cdSHong Zhang } 19734fe895cdSHong Zhang 197499cafbc1SBarry Smith #undef __FUNCT__ 197599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 197699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 197799cafbc1SBarry Smith { 197899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 197999cafbc1SBarry Smith PetscErrorCode ierr; 198099cafbc1SBarry Smith 198199cafbc1SBarry Smith PetscFunctionBegin; 198299cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 198399cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 198499cafbc1SBarry Smith PetscFunctionReturn(0); 198599cafbc1SBarry Smith } 198699cafbc1SBarry Smith 198799cafbc1SBarry Smith #undef __FUNCT__ 198899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 198999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 199099cafbc1SBarry Smith { 199199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 199299cafbc1SBarry Smith PetscErrorCode ierr; 199399cafbc1SBarry Smith 199499cafbc1SBarry Smith PetscFunctionBegin; 199599cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 199699cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 199799cafbc1SBarry Smith PetscFunctionReturn(0); 199899cafbc1SBarry Smith } 199999cafbc1SBarry Smith 200082094794SBarry Smith #undef __FUNCT__ 200182094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 20024aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 20034aa3045dSJed Brown { 20044aa3045dSJed Brown PetscErrorCode ierr; 20054aa3045dSJed Brown IS iscol_local; 20064aa3045dSJed Brown PetscInt csize; 20074aa3045dSJed Brown 20084aa3045dSJed Brown PetscFunctionBegin; 20094aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 2010b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 2011b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 2012e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 2013b79d0421SJed Brown } else { 20144aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 2015b79d0421SJed Brown } 20164aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 2017b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 2018b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 20196bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 2020b79d0421SJed Brown } 20214aa3045dSJed Brown PetscFunctionReturn(0); 20224aa3045dSJed Brown } 202329dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*); 20244aa3045dSJed Brown #undef __FUNCT__ 2025dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private" 202682094794SBarry Smith /* 202782094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 202882094794SBarry Smith in local and then by concatenating the local matrices the end result. 202982094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 203082094794SBarry Smith */ 20314aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 203282094794SBarry Smith { 203382094794SBarry Smith PetscErrorCode ierr; 203482094794SBarry Smith PetscMPIInt rank,size; 203582094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 203629dcf524SDmitry Karpeev PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow; 203729dcf524SDmitry Karpeev Mat M,Mreuse; 203882094794SBarry Smith MatScalar *vwork,*aa; 203982094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 204029dcf524SDmitry Karpeev IS isrow_new, iscol_new; 204129dcf524SDmitry Karpeev PetscBool idflag,allrows, allcols; 204282094794SBarry Smith Mat_SeqBAIJ *aij; 204382094794SBarry Smith 204482094794SBarry Smith 204582094794SBarry Smith PetscFunctionBegin; 204682094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 204782094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 204829dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 204929dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 205029dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 205129dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 205282094794SBarry Smith 205329dcf524SDmitry Karpeev /* Check for special case: each processor gets entire matrix columns */ 205429dcf524SDmitry Karpeev ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr); 205529dcf524SDmitry Karpeev ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr); 205629dcf524SDmitry Karpeev if (idflag && ncol == mat->cmap->N) { 205729dcf524SDmitry Karpeev allcols = PETSC_TRUE; 205829dcf524SDmitry Karpeev } else { 205929dcf524SDmitry Karpeev allcols = PETSC_FALSE; 206029dcf524SDmitry Karpeev } 206129dcf524SDmitry Karpeev 206229dcf524SDmitry Karpeev ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr); 206329dcf524SDmitry Karpeev ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr); 206429dcf524SDmitry Karpeev if (idflag && nrow == mat->rmap->N) { 206529dcf524SDmitry Karpeev allrows = PETSC_TRUE; 206629dcf524SDmitry Karpeev } else { 206729dcf524SDmitry Karpeev allrows = PETSC_FALSE; 206829dcf524SDmitry Karpeev } 206982094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 207082094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 2071e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 207275f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 207382094794SBarry Smith } else { 207475f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 207582094794SBarry Smith } 207629dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 207729dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 207882094794SBarry Smith /* 207982094794SBarry Smith m - number of local rows 208082094794SBarry Smith n - number of columns (same on all processors) 208182094794SBarry Smith rstart - first row in new global matrix generated 208282094794SBarry Smith */ 208382094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 208482094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 208582094794SBarry Smith m = m/bs; 208682094794SBarry Smith n = n/bs; 208782094794SBarry Smith 208882094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 208982094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 209082094794SBarry Smith ii = aij->i; 209182094794SBarry Smith jj = aij->j; 209282094794SBarry Smith 209382094794SBarry Smith /* 209482094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 209582094794SBarry Smith portions of the matrix in order to do correct preallocation 209682094794SBarry Smith */ 209782094794SBarry Smith 209882094794SBarry Smith /* first get start and end of "diagonal" columns */ 209982094794SBarry Smith if (csize == PETSC_DECIDE) { 210082094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 210182094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 210282094794SBarry Smith nlocal = m; 210382094794SBarry Smith } else { 210482094794SBarry Smith nlocal = n/size + ((n % size) > rank); 210582094794SBarry Smith } 210682094794SBarry Smith } else { 210782094794SBarry Smith nlocal = csize/bs; 210882094794SBarry Smith } 210982094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 211082094794SBarry Smith rstart = rend - nlocal; 211165e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 211282094794SBarry Smith 211382094794SBarry Smith /* next, compute all the lengths */ 211482094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 211582094794SBarry Smith olens = dlens + m; 211682094794SBarry Smith for (i=0; i<m; i++) { 211782094794SBarry Smith jend = ii[i+1] - ii[i]; 211882094794SBarry Smith olen = 0; 211982094794SBarry Smith dlen = 0; 212082094794SBarry Smith for (j=0; j<jend; j++) { 212182094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 212282094794SBarry Smith else dlen++; 212382094794SBarry Smith jj++; 212482094794SBarry Smith } 212582094794SBarry Smith olens[i] = olen; 212682094794SBarry Smith dlens[i] = dlen; 212782094794SBarry Smith } 212882094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 212982094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 213082094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 213182094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 213282094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 213382094794SBarry Smith } else { 213482094794SBarry Smith PetscInt ml,nl; 213582094794SBarry Smith 213682094794SBarry Smith M = *newmat; 213782094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2138e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 213982094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 214082094794SBarry Smith /* 214182094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 214282094794SBarry Smith rather than the slower MatSetValues(). 214382094794SBarry Smith */ 214482094794SBarry Smith M->was_assembled = PETSC_TRUE; 214582094794SBarry Smith M->assembled = PETSC_FALSE; 214682094794SBarry Smith } 214782094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 214882094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 214982094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 215082094794SBarry Smith ii = aij->i; 215182094794SBarry Smith jj = aij->j; 215282094794SBarry Smith aa = aij->a; 215382094794SBarry Smith for (i=0; i<m; i++) { 215482094794SBarry Smith row = rstart/bs + i; 215582094794SBarry Smith nz = ii[i+1] - ii[i]; 215682094794SBarry Smith cwork = jj; jj += nz; 215775f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 215882094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 215982094794SBarry Smith } 216082094794SBarry Smith 216182094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 216282094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 216382094794SBarry Smith *newmat = M; 216482094794SBarry Smith 216582094794SBarry Smith /* save submatrix used in processor for next request */ 216682094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 216782094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 216882094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 216982094794SBarry Smith } 217082094794SBarry Smith 217182094794SBarry Smith PetscFunctionReturn(0); 217282094794SBarry Smith } 217382094794SBarry Smith 217482094794SBarry Smith #undef __FUNCT__ 217582094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 217682094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 217782094794SBarry Smith { 217882094794SBarry Smith MPI_Comm comm,pcomm; 217975f6568bSJed Brown PetscInt first,rlocal_size,clocal_size,nrows; 218082094794SBarry Smith const PetscInt *rows; 2181dbf0e21dSBarry Smith PetscMPIInt size; 218275f6568bSJed Brown IS crowp,growp,irowp,lrowp,lcolp; 218382094794SBarry Smith PetscErrorCode ierr; 218482094794SBarry Smith 218582094794SBarry Smith PetscFunctionBegin; 218682094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 218782094794SBarry Smith /* make a collective version of 'rowp' */ 218882094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 218982094794SBarry Smith if (pcomm==comm) { 219082094794SBarry Smith crowp = rowp; 219182094794SBarry Smith } else { 219282094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 219382094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 219470b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 219582094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 219682094794SBarry Smith } 219782094794SBarry Smith /* collect the global row permutation and invert it */ 219882094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 219982094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 220082094794SBarry Smith if (pcomm!=comm) { 22016bf464f9SBarry Smith ierr = ISDestroy(&crowp);CHKERRQ(ierr); 220282094794SBarry Smith } 220382094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 220475f6568bSJed Brown ierr = ISDestroy(&growp);CHKERRQ(ierr); 220582094794SBarry Smith /* get the local target indices */ 220682094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 220775f6568bSJed Brown ierr = MatGetLocalSize(A,&rlocal_size,&clocal_size);CHKERRQ(ierr); 220882094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 220975f6568bSJed Brown ierr = ISCreateGeneral(MPI_COMM_SELF,rlocal_size,rows+first,PETSC_COPY_VALUES,&lrowp);CHKERRQ(ierr); 221082094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 22116bf464f9SBarry Smith ierr = ISDestroy(&irowp);CHKERRQ(ierr); 221282094794SBarry Smith /* the column permutation is so much easier; 221382094794SBarry Smith make a local version of 'colp' and invert it */ 221482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2215dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2216dbf0e21dSBarry Smith if (size==1) { 221782094794SBarry Smith lcolp = colp; 221882094794SBarry Smith } else { 221975f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 222082094794SBarry Smith } 2221dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 222275f6568bSJed Brown /* now we just get the submatrix */ 222375f6568bSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2224dbf0e21dSBarry Smith if (size>1) { 22256bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 222682094794SBarry Smith } 222782094794SBarry Smith /* clean up */ 22286bf464f9SBarry Smith ierr = ISDestroy(&lrowp);CHKERRQ(ierr); 222982094794SBarry Smith PetscFunctionReturn(0); 223082094794SBarry Smith } 223182094794SBarry Smith 22328c7482ecSBarry Smith #undef __FUNCT__ 22338c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 22347087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 22358c7482ecSBarry Smith { 22368c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 22378c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 22388c7482ecSBarry Smith 22398c7482ecSBarry Smith PetscFunctionBegin; 22408c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 22418c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 22428c7482ecSBarry Smith PetscFunctionReturn(0); 22438c7482ecSBarry Smith } 22448c7482ecSBarry Smith 2245ab9863d7SBarry Smith extern PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat); 2246f6d58c54SBarry Smith 2247f6d58c54SBarry Smith #undef __FUNCT__ 2248f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2249f6d58c54SBarry Smith /* 2250f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2251f6d58c54SBarry Smith */ 2252f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2253f6d58c54SBarry Smith { 2254f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2255f6d58c54SBarry Smith PetscErrorCode ierr; 2256f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 22571a83f524SJed Brown PetscInt bs,i,n,nrows,j,k,m,ncols,col; 22581a83f524SJed Brown const PetscInt *is,*rows = 0,*A_ci,*A_cj,*B_ci,*B_cj; 22591a83f524SJed Brown PetscInt nis = iscoloring->n,nctot,*cols; 2260f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2261f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2262f6d58c54SBarry Smith IS *isa; 2263ace3abfcSBarry Smith PetscBool done,flg; 2264992144d0SBarry Smith ISLocalToGlobalMapping map = mat->cmap->bmapping; 2265f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2266f6d58c54SBarry Smith 2267f6d58c54SBarry Smith PetscFunctionBegin; 2268e7e72b3dSBarry Smith if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2269e7e72b3dSBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2270f6d58c54SBarry Smith 2271f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2272f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2273f6d58c54SBarry Smith M = mat->rmap->n/bs; 2274f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2275f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2276f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2277f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2278f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2279f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2280f6d58c54SBarry Smith 2281f6d58c54SBarry Smith c->ncolors = nis; 2282f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2283f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2284f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2285f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2286f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2287f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2288f6d58c54SBarry Smith 2289f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2290f6d58c54SBarry Smith if (!baij->colmap) { 2291ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2292f6d58c54SBarry Smith } 2293f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2294f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2295f6d58c54SBarry Smith 2296f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2297f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2298f6d58c54SBarry Smith 2299f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2300f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2301f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2302f6d58c54SBarry Smith c->ncolumns[i] = n; 2303f6d58c54SBarry Smith if (n) { 2304f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2305f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2306f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2307f6d58c54SBarry Smith } else { 2308f6d58c54SBarry Smith c->columns[i] = 0; 2309f6d58c54SBarry Smith } 2310f6d58c54SBarry Smith 2311f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2312f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2313f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2314fca92195SBarry Smith ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr); 2315f6d58c54SBarry Smith 2316f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2317f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2318f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2319f6d58c54SBarry Smith if (!nctot) { 2320f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2321f6d58c54SBarry Smith } 2322f6d58c54SBarry Smith 2323f6d58c54SBarry Smith disp[0] = 0; 2324f6d58c54SBarry Smith for (j=1; j<size; j++) { 2325f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2326f6d58c54SBarry Smith } 2327f6d58c54SBarry Smith 2328f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2329f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2330f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2331fca92195SBarry Smith ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr); 2332f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2333f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2334f6d58c54SBarry Smith nctot = n; 2335f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2336f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2337f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2338f6d58c54SBarry Smith 2339f6d58c54SBarry Smith /* 2340f6d58c54SBarry Smith Mark all rows affect by these columns 2341f6d58c54SBarry Smith */ 2342f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2343f6d58c54SBarry Smith flg = PETSC_FALSE; 2344acfcf0e5SJed Brown ierr = PetscOptionsGetBool(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2345f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2346f6d58c54SBarry Smith /* crude, fast version */ 2347f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2348f6d58c54SBarry Smith /* loop over columns*/ 2349f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2350f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2351f6d58c54SBarry Smith col = ltog[cols[j]]; 2352f6d58c54SBarry Smith } else { 2353f6d58c54SBarry Smith col = cols[j]; 2354f6d58c54SBarry Smith } 2355f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2356f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2357f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2358f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2359f6d58c54SBarry Smith } else { 2360f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2361cb9801acSJed Brown ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2362f6d58c54SBarry Smith colb --; 2363f6d58c54SBarry Smith #else 2364f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2365f6d58c54SBarry Smith #endif 2366f6d58c54SBarry Smith if (colb == -1) { 2367f6d58c54SBarry Smith m = 0; 2368f6d58c54SBarry Smith } else { 2369f6d58c54SBarry Smith colb = colb/bs; 2370f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2371f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2372f6d58c54SBarry Smith } 2373f6d58c54SBarry Smith } 2374f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2375f6d58c54SBarry Smith for (k=0; k<m; k++) { 2376f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2377f6d58c54SBarry Smith } 2378f6d58c54SBarry Smith } 2379f6d58c54SBarry Smith 2380f6d58c54SBarry Smith /* count the number of hits */ 2381f6d58c54SBarry Smith nrows = 0; 2382f6d58c54SBarry Smith for (j=0; j<M; j++) { 2383f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2384f6d58c54SBarry Smith } 2385f6d58c54SBarry Smith c->nrows[i] = nrows; 2386f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2387f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2388f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2389f6d58c54SBarry Smith nrows = 0; 2390f6d58c54SBarry Smith for (j=0; j<M; j++) { 2391f6d58c54SBarry Smith if (rowhit[j]) { 2392f6d58c54SBarry Smith c->rows[i][nrows] = j; 2393f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2394f6d58c54SBarry Smith nrows++; 2395f6d58c54SBarry Smith } 2396f6d58c54SBarry Smith } 2397f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2398f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2399f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2400f6d58c54SBarry Smith rowhit[M] = M; 2401f6d58c54SBarry Smith nrows = 0; 2402f6d58c54SBarry Smith /* loop over columns*/ 2403f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2404f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2405f6d58c54SBarry Smith col = ltog[cols[j]]; 2406f6d58c54SBarry Smith } else { 2407f6d58c54SBarry Smith col = cols[j]; 2408f6d58c54SBarry Smith } 2409f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2410f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2411f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2412f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2413f6d58c54SBarry Smith } else { 2414f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2415f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2416f6d58c54SBarry Smith colb --; 2417f6d58c54SBarry Smith #else 2418f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2419f6d58c54SBarry Smith #endif 2420f6d58c54SBarry Smith if (colb == -1) { 2421f6d58c54SBarry Smith m = 0; 2422f6d58c54SBarry Smith } else { 2423f6d58c54SBarry Smith colb = colb/bs; 2424f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2425f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2426f6d58c54SBarry Smith } 2427f6d58c54SBarry Smith } 2428f6d58c54SBarry Smith 2429f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2430f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2431f6d58c54SBarry Smith for (k=0; k<m; k++) { 2432f6d58c54SBarry Smith currentcol = *rows++; 2433f6d58c54SBarry Smith /* is it already in the list? */ 2434f6d58c54SBarry Smith do { 2435f6d58c54SBarry Smith mfm = fm; 2436f6d58c54SBarry Smith fm = rowhit[fm]; 2437f6d58c54SBarry Smith } while (fm < currentcol); 2438f6d58c54SBarry Smith /* not in list so add it */ 2439f6d58c54SBarry Smith if (fm != currentcol) { 2440f6d58c54SBarry Smith nrows++; 2441f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2442f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2443f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2444f6d58c54SBarry Smith rowhit[currentcol] = fm; 2445f6d58c54SBarry Smith fm = currentcol; 2446f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2447f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2448f6d58c54SBarry Smith } 2449f6d58c54SBarry Smith } 2450f6d58c54SBarry Smith c->nrows[i] = nrows; 2451f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2452f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2453f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2454f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2455f6d58c54SBarry Smith nrows = 0; 2456f6d58c54SBarry Smith fm = rowhit[M]; 2457f6d58c54SBarry Smith do { 2458f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2459f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2460f6d58c54SBarry Smith fm = rowhit[fm]; 2461f6d58c54SBarry Smith } while (fm < M); 2462f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2463f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2464f6d58c54SBarry Smith } 2465f6d58c54SBarry Smith 2466f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2467f6d58c54SBarry Smith /* 2468f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2469f6d58c54SBarry Smith */ 2470f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2471f6d58c54SBarry Smith PetscInt *garray; 2472f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2473f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2474f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2475f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2476f6d58c54SBarry Smith } 2477f6d58c54SBarry Smith } 2478f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2479f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2480f6d58c54SBarry Smith CHKMEMQ; 2481f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2482f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2483f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2484f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2485f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2486f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2487f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2488f6d58c54SBarry Smith colb = col - cstart; 2489f6d58c54SBarry Smith } else { 2490f6d58c54SBarry Smith /* column is in "off-processor" part */ 2491f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2492f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2493f6d58c54SBarry Smith colb --; 2494f6d58c54SBarry Smith #else 2495f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2496f6d58c54SBarry Smith #endif 2497f6d58c54SBarry Smith colb = colb/bs; 2498f6d58c54SBarry Smith colb += cend - cstart; 2499f6d58c54SBarry Smith } 2500f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2501f6d58c54SBarry Smith } 2502f6d58c54SBarry Smith } 2503f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2504f6d58c54SBarry Smith /* Get gtol mapping */ 2505f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2506f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2507f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2508f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2509f6d58c54SBarry Smith 2510f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2511f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2512f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2513f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2514f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2515f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2516f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2517f6d58c54SBarry Smith } 2518f6d58c54SBarry Smith } 2519f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2520f6d58c54SBarry Smith } 2521f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2522f6d58c54SBarry Smith 2523f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2524f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2525f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2526f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2527f6d58c54SBarry Smith CHKMEMQ; 2528f6d58c54SBarry Smith PetscFunctionReturn(0); 2529f6d58c54SBarry Smith } 2530f6d58c54SBarry Smith 2531f6d58c54SBarry Smith #undef __FUNCT__ 2532d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ" 2533d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2534f6d58c54SBarry Smith { 2535f6d58c54SBarry Smith Mat B; 2536f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2537f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2538f6d58c54SBarry Smith Mat_SeqAIJ *b; 2539f6d58c54SBarry Smith PetscErrorCode ierr; 2540f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2541f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2542f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2543f6d58c54SBarry Smith 2544f6d58c54SBarry Smith PetscFunctionBegin; 2545f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2546f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2547f6d58c54SBarry Smith 2548f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2549f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2550f6d58c54SBarry Smith */ 2551f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2552f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2553f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2554f6d58c54SBarry Smith } 2555f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2556f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2557f6d58c54SBarry Smith displs = recvcounts + size; 2558f6d58c54SBarry Smith for (i=0; i<size; i++) { 2559f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2560f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2561f6d58c54SBarry Smith } 2562f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2563f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2564f6d58c54SBarry Smith #else 2565f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2566f6d58c54SBarry Smith #endif 2567f6d58c54SBarry Smith /* --------------------------------------------------------------- 2568f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2569f6d58c54SBarry Smith */ 2570f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2571f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2572f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2573f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2574f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2575f6d58c54SBarry Smith 2576f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2577f6d58c54SBarry Smith Copy my part of matrix column indices over 2578f6d58c54SBarry Smith */ 2579f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2580f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2581f6d58c54SBarry Smith a_jsendbuf = ad->j; 2582f6d58c54SBarry Smith b_jsendbuf = bd->j; 2583f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2584f6d58c54SBarry Smith cnt = 0; 2585f6d58c54SBarry Smith for (i=0; i<n; i++) { 2586f6d58c54SBarry Smith 2587f6d58c54SBarry Smith /* put in lower diagonal portion */ 2588f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2589f6d58c54SBarry Smith while (m > 0) { 2590f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2591f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2592f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2593f6d58c54SBarry Smith m--; 2594f6d58c54SBarry Smith } 2595f6d58c54SBarry Smith 2596f6d58c54SBarry Smith /* put in diagonal portion */ 2597f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2598f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2599f6d58c54SBarry Smith } 2600f6d58c54SBarry Smith 2601f6d58c54SBarry Smith /* put in upper diagonal portion */ 2602f6d58c54SBarry Smith while (m-- > 0) { 2603f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2604f6d58c54SBarry Smith } 2605f6d58c54SBarry Smith } 2606e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2607f6d58c54SBarry Smith 2608f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2609f6d58c54SBarry Smith Gather all column indices to all processors 2610f6d58c54SBarry Smith */ 2611f6d58c54SBarry Smith for (i=0; i<size; i++) { 2612f6d58c54SBarry Smith recvcounts[i] = 0; 2613f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2614f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2615f6d58c54SBarry Smith } 2616f6d58c54SBarry Smith } 2617f6d58c54SBarry Smith displs[0] = 0; 2618f6d58c54SBarry Smith for (i=1; i<size; i++) { 2619f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2620f6d58c54SBarry Smith } 2621f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2622f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2623f6d58c54SBarry Smith #else 2624f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2625f6d58c54SBarry Smith #endif 2626f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2627f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2628f6d58c54SBarry Smith */ 2629f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2630f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2631f6d58c54SBarry Smith /* set the b->i indices */ 2632f6d58c54SBarry Smith b->i[0] = 0; 2633f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2634f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2635f6d58c54SBarry Smith } 2636f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2637f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2638f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2639f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2640f6d58c54SBarry Smith 2641f6d58c54SBarry Smith if (A->symmetric) { 2642f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2643f6d58c54SBarry Smith } else if (A->hermitian) { 2644f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2645f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2646f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2647f6d58c54SBarry Smith } 2648f6d58c54SBarry Smith *newmat = B; 2649f6d58c54SBarry Smith PetscFunctionReturn(0); 2650f6d58c54SBarry Smith } 2651f6d58c54SBarry Smith 2652b1a666ecSBarry Smith #undef __FUNCT__ 2653b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2654b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2655b1a666ecSBarry Smith { 2656b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2657b1a666ecSBarry Smith PetscErrorCode ierr; 2658b1a666ecSBarry Smith Vec bb1 = 0; 2659b1a666ecSBarry Smith 2660b1a666ecSBarry Smith PetscFunctionBegin; 2661b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2662b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2663b1a666ecSBarry Smith PetscFunctionReturn(0); 2664b1a666ecSBarry Smith } 2665b1a666ecSBarry Smith 26664e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 26674e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26684e980039SJed Brown } 26694e980039SJed Brown 2670b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2671b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2672b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2673b1a666ecSBarry Smith its--; 2674b1a666ecSBarry Smith } 2675b1a666ecSBarry Smith 2676b1a666ecSBarry Smith while (its--) { 2677b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2678b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2679b1a666ecSBarry Smith 2680b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2681b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2682b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2683b1a666ecSBarry Smith 2684b1a666ecSBarry Smith /* local sweep */ 2685b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2686b1a666ecSBarry Smith } 2687b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2688b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2689b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2690b1a666ecSBarry Smith its--; 2691b1a666ecSBarry Smith } 2692b1a666ecSBarry Smith while (its--) { 2693b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2694b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2695b1a666ecSBarry Smith 2696b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2697b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2698b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2699b1a666ecSBarry Smith 2700b1a666ecSBarry Smith /* local sweep */ 2701b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2702b1a666ecSBarry Smith } 2703b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2704b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2705b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2706b1a666ecSBarry Smith its--; 2707b1a666ecSBarry Smith } 2708b1a666ecSBarry Smith while (its--) { 2709b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2710b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2711b1a666ecSBarry Smith 2712b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2713b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2714b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2715b1a666ecSBarry Smith 2716b1a666ecSBarry Smith /* local sweep */ 2717b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2718b1a666ecSBarry Smith } 2719e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2720b1a666ecSBarry Smith 27216bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2722b1a666ecSBarry Smith PetscFunctionReturn(0); 2723b1a666ecSBarry Smith } 2724b1a666ecSBarry Smith 27257087cfbeSBarry Smith extern PetscErrorCode MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2726f6d58c54SBarry Smith 2727bbead8a2SBarry Smith #undef __FUNCT__ 2728bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ" 2729713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2730bbead8a2SBarry Smith { 2731bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2732bbead8a2SBarry Smith PetscErrorCode ierr; 2733bbead8a2SBarry Smith 2734bbead8a2SBarry Smith PetscFunctionBegin; 2735bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 2736bbead8a2SBarry Smith PetscFunctionReturn(0); 2737bbead8a2SBarry Smith } 2738bbead8a2SBarry Smith 27398c7482ecSBarry Smith 274079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2741cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2742cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2743cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2744cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2745cc2dc46cSBarry Smith MatMult_MPIBAIJ, 274697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 27477c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 27487c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2749cc2dc46cSBarry Smith 0, 2750cc2dc46cSBarry Smith 0, 2751cc2dc46cSBarry Smith 0, 275297304618SKris Buschelman /*10*/ 0, 2753cc2dc46cSBarry Smith 0, 2754cc2dc46cSBarry Smith 0, 2755b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2756cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 275797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 27587fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2759cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2760cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2761cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 276297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2763cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2764cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2765cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2766d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2767cc2dc46cSBarry Smith 0, 2768cc2dc46cSBarry Smith 0, 2769cc2dc46cSBarry Smith 0, 2770cc2dc46cSBarry Smith 0, 27714994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2772273d9f13SBarry Smith 0, 2773cc2dc46cSBarry Smith 0, 2774cc2dc46cSBarry Smith 0, 2775cc2dc46cSBarry Smith 0, 2776d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2777cc2dc46cSBarry Smith 0, 2778cc2dc46cSBarry Smith 0, 2779cc2dc46cSBarry Smith 0, 2780cc2dc46cSBarry Smith 0, 2781d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2782cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2783cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2784cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 27853c896bc6SHong Zhang MatCopy_MPIBAIJ, 2786d519adbfSMatthew Knepley /*44*/ 0, 2787cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2788cc2dc46cSBarry Smith 0, 2789cc2dc46cSBarry Smith 0, 2790cc2dc46cSBarry Smith 0, 2791f73d5cc4SBarry Smith /*49*/ 0, 2792cc2dc46cSBarry Smith 0, 2793cc2dc46cSBarry Smith 0, 2794cc2dc46cSBarry Smith 0, 2795cc2dc46cSBarry Smith 0, 2796f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2797cc2dc46cSBarry Smith 0, 2798cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 279982094794SBarry Smith MatPermute_MPIBAIJ, 2800cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2801d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2802f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2803f14a1c24SBarry Smith MatView_MPIBAIJ, 2804357abbc8SBarry Smith 0, 28057843d17aSBarry Smith 0, 2806d519adbfSMatthew Knepley /*64*/ 0, 28077843d17aSBarry Smith 0, 28087843d17aSBarry Smith 0, 28097843d17aSBarry Smith 0, 28107843d17aSBarry Smith 0, 2811d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 28127843d17aSBarry Smith 0, 281397304618SKris Buschelman 0, 281497304618SKris Buschelman 0, 281597304618SKris Buschelman 0, 2816d519adbfSMatthew Knepley /*74*/ 0, 2817f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 281897304618SKris Buschelman 0, 281997304618SKris Buschelman 0, 282097304618SKris Buschelman 0, 2821d519adbfSMatthew Knepley /*79*/ 0, 282297304618SKris Buschelman 0, 282397304618SKris Buschelman 0, 282497304618SKris Buschelman 0, 28255bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2826d519adbfSMatthew Knepley /*84*/ 0, 2827865e5f61SKris Buschelman 0, 2828865e5f61SKris Buschelman 0, 2829865e5f61SKris Buschelman 0, 2830865e5f61SKris Buschelman 0, 2831d519adbfSMatthew Knepley /*89*/ 0, 2832865e5f61SKris Buschelman 0, 2833865e5f61SKris Buschelman 0, 2834865e5f61SKris Buschelman 0, 2835865e5f61SKris Buschelman 0, 2836d519adbfSMatthew Knepley /*94*/ 0, 2837865e5f61SKris Buschelman 0, 2838865e5f61SKris Buschelman 0, 283999cafbc1SBarry Smith 0, 284099cafbc1SBarry Smith 0, 2841d519adbfSMatthew Knepley /*99*/ 0, 284299cafbc1SBarry Smith 0, 284399cafbc1SBarry Smith 0, 284499cafbc1SBarry Smith 0, 284599cafbc1SBarry Smith 0, 2846d519adbfSMatthew Knepley /*104*/0, 284799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 28488c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 28498c7482ecSBarry Smith 0, 28508c7482ecSBarry Smith 0, 2851d519adbfSMatthew Knepley /*109*/0, 28528c7482ecSBarry Smith 0, 28538c7482ecSBarry Smith 0, 28548c7482ecSBarry Smith 0, 28558c7482ecSBarry Smith 0, 2856d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 28578c7482ecSBarry Smith 0, 28584683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 28594683f7a4SShri Abhyankar 0, 28604683f7a4SShri Abhyankar 0, 28614683f7a4SShri Abhyankar /*119*/0, 28624683f7a4SShri Abhyankar 0, 28634683f7a4SShri Abhyankar 0, 2864bbead8a2SBarry Smith 0, 2865bbead8a2SBarry Smith 0, 2866bbead8a2SBarry Smith /*124*/0, 2867bbead8a2SBarry Smith 0, 2868bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIBAIJ 28698c7482ecSBarry Smith }; 287079bdfe76SSatish Balay 2871e18c124aSSatish Balay EXTERN_C_BEGIN 28724a2ae208SSatish Balay #undef __FUNCT__ 28734a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 287411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 28755ef9f2a5SBarry Smith { 28765ef9f2a5SBarry Smith PetscFunctionBegin; 28775ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 28785ef9f2a5SBarry Smith PetscFunctionReturn(0); 28795ef9f2a5SBarry Smith } 2880e18c124aSSatish Balay EXTERN_C_END 288179bdfe76SSatish Balay 2882273d9f13SBarry Smith EXTERN_C_BEGIN 28837087cfbeSBarry Smith extern PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2884d94109b8SHong Zhang EXTERN_C_END 2885d94109b8SHong Zhang 2886b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2887aac34f13SBarry Smith #undef __FUNCT__ 2888aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2889cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2890aac34f13SBarry Smith { 2891b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2892b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2893b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2894b8d659d7SLisandro Dalcin PetscScalar *values=0; 2895aac34f13SBarry Smith PetscErrorCode ierr; 2896aac34f13SBarry Smith 2897aac34f13SBarry Smith PetscFunctionBegin; 289826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 289926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 290026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 290126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2902e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2903d0f46423SBarry Smith m = B->rmap->n/bs; 2904d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2905d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2906d0f46423SBarry Smith cend = B->cmap->rend/bs; 2907b8d659d7SLisandro Dalcin 2908e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2909fca92195SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 2910aac34f13SBarry Smith for (i=0; i<m; i++) { 2911cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2912e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2913b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2914cf12db73SBarry Smith JJ = jj + ii[i]; 2915b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2916aac34f13SBarry Smith if (*JJ >= cstart) break; 2917aac34f13SBarry Smith JJ++; 2918aac34f13SBarry Smith } 2919aac34f13SBarry Smith d = 0; 2920b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2921aac34f13SBarry Smith if (*JJ++ >= cend) break; 2922aac34f13SBarry Smith d++; 2923aac34f13SBarry Smith } 2924aac34f13SBarry Smith d_nnz[i] = d; 2925b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2926aac34f13SBarry Smith } 2927aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2928fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2929aac34f13SBarry Smith 2930b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2931b8d659d7SLisandro Dalcin if (!values) { 2932fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2933b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2934b8d659d7SLisandro Dalcin } 2935b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2936b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2937cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2938cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2939cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2940b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2941aac34f13SBarry Smith } 2942aac34f13SBarry Smith 2943b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2944aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2945aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29467827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2947aac34f13SBarry Smith PetscFunctionReturn(0); 2948aac34f13SBarry Smith } 2949b8d659d7SLisandro Dalcin EXTERN_C_END 2950aac34f13SBarry Smith 2951aac34f13SBarry Smith #undef __FUNCT__ 2952aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2953aac34f13SBarry Smith /*@C 2954dfb205c3SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2955aac34f13SBarry Smith (the default parallel PETSc format). 2956aac34f13SBarry Smith 2957aac34f13SBarry Smith Collective on MPI_Comm 2958aac34f13SBarry Smith 2959aac34f13SBarry Smith Input Parameters: 2960aac34f13SBarry Smith + A - the matrix 2961dfb205c3SBarry Smith . bs - the block size 2962aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2963aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2964aac34f13SBarry Smith - v - optional values in the matrix 2965aac34f13SBarry Smith 2966aac34f13SBarry Smith Level: developer 2967aac34f13SBarry Smith 2968aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2969aac34f13SBarry Smith 297069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2971aac34f13SBarry Smith @*/ 29727087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2973aac34f13SBarry Smith { 29744ac538c5SBarry Smith PetscErrorCode ierr; 2975aac34f13SBarry Smith 2976aac34f13SBarry Smith PetscFunctionBegin; 29776ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 29786ba663aaSJed Brown PetscValidType(B,1); 29796ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 29804ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2981aac34f13SBarry Smith PetscFunctionReturn(0); 2982aac34f13SBarry Smith } 2983aac34f13SBarry Smith 2984d94109b8SHong Zhang EXTERN_C_BEGIN 29854a2ae208SSatish Balay #undef __FUNCT__ 2986a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 29877087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2988a23d5eceSKris Buschelman { 2989a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2990dfbe8321SBarry Smith PetscErrorCode ierr; 2991535b19f3SBarry Smith PetscInt i; 29922576faa2SJed Brown PetscBool d_realalloc = PETSC_FALSE,o_realalloc = PETSC_FALSE; 2993a23d5eceSKris Buschelman 2994a23d5eceSKris Buschelman PetscFunctionBegin; 29952576faa2SJed Brown if (d_nz >= 0 || d_nnz) d_realalloc = PETSC_TRUE; 29962576faa2SJed Brown if (o_nz >= 0 || o_nnz) o_realalloc = PETSC_TRUE; 2997db4efbfdSBarry Smith 2998a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2999a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 3000e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 3001e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 3002899cda47SBarry Smith 300326283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 300426283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 300526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 300626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 3007e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 3008899cda47SBarry Smith 3009a23d5eceSKris Buschelman if (d_nnz) { 3010d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 3011e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 3012a23d5eceSKris Buschelman } 3013a23d5eceSKris Buschelman } 3014a23d5eceSKris Buschelman if (o_nnz) { 3015d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 3016e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 3017a23d5eceSKris Buschelman } 3018a23d5eceSKris Buschelman } 3019a23d5eceSKris Buschelman 3020a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 3021a23d5eceSKris Buschelman b->bs2 = bs*bs; 3022d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 3023d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 3024d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 3025d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 3026a23d5eceSKris Buschelman 3027a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 3028d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 3029a23d5eceSKris Buschelman } 3030d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 3031d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 3032d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 3033d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 3034a23d5eceSKris Buschelman 3035526dfc15SBarry Smith if (!B->preallocated) { 3036f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 3037d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 30389c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 303952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 3040f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 3041d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 30429c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 304352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 30447adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 3045526dfc15SBarry Smith } 3046a23d5eceSKris Buschelman 3047526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 3048526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 30492576faa2SJed Brown /* Do not error if the user did not give real preallocation information. Ugly because this would overwrite a previous user call to MatSetOption(). */ 30502576faa2SJed Brown if (!d_realalloc) {ierr = MatSetOption(b->A,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);} 30512576faa2SJed Brown if (!o_realalloc) {ierr = MatSetOption(b->B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);} 3052526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 3053a23d5eceSKris Buschelman PetscFunctionReturn(0); 3054a23d5eceSKris Buschelman } 3055a23d5eceSKris Buschelman EXTERN_C_END 3056a23d5eceSKris Buschelman 3057a23d5eceSKris Buschelman EXTERN_C_BEGIN 30587087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 30597087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 306092b32695SKris Buschelman EXTERN_C_END 30615bf65638SKris Buschelman 306282094794SBarry Smith 306382094794SBarry Smith EXTERN_C_BEGIN 306482094794SBarry Smith #undef __FUNCT__ 306582094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 306619fd82e9SBarry Smith PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 306782094794SBarry Smith { 306882094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 306982094794SBarry Smith PetscErrorCode ierr; 307082094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 307182094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 307282094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 307382094794SBarry Smith 307482094794SBarry Smith PetscFunctionBegin; 307582094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 307682094794SBarry Smith ii[0] = 0; 307782094794SBarry Smith CHKMEMQ; 307882094794SBarry Smith for (i=0; i<M; i++) { 3079e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 3080e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 308182094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 30825ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 30835ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 30845ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 30855ee9ba1cSJed Brown } 308682094794SBarry Smith CHKMEMQ; 308782094794SBarry Smith } 308882094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 308982094794SBarry Smith cnt = 0; 309082094794SBarry Smith for (i=0; i<M; i++) { 309182094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 309282094794SBarry Smith if (garray[jo[j]] > rstart) break; 309382094794SBarry Smith jj[cnt++] = garray[jo[j]]; 309482094794SBarry Smith CHKMEMQ; 309582094794SBarry Smith } 309682094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 30975ee9ba1cSJed Brown if (jd[k] != i) { 309882094794SBarry Smith jj[cnt++] = rstart + jd[k]; 309982094794SBarry Smith CHKMEMQ; 310082094794SBarry Smith } 31015ee9ba1cSJed Brown } 310282094794SBarry Smith for (;j<io[i+1]; j++) { 310382094794SBarry Smith jj[cnt++] = garray[jo[j]]; 310482094794SBarry Smith CHKMEMQ; 310582094794SBarry Smith } 310682094794SBarry Smith } 310782094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 310882094794SBarry Smith PetscFunctionReturn(0); 310982094794SBarry Smith } 3110dbf0e21dSBarry Smith EXTERN_C_END 311182094794SBarry Smith 3112c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 31131e66c38aSShri Abhyankar EXTERN_C_BEGIN 311419fd82e9SBarry Smith PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 31151e66c38aSShri Abhyankar EXTERN_C_END 311662471d69SBarry Smith 311762471d69SBarry Smith EXTERN_C_BEGIN 311862471d69SBarry Smith #undef __FUNCT__ 311962471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ" 312019fd82e9SBarry Smith PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 312162471d69SBarry Smith { 312262471d69SBarry Smith PetscErrorCode ierr; 312362471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 312462471d69SBarry Smith Mat B; 312585a69837SSatish Balay Mat_MPIAIJ *b; 312662471d69SBarry Smith 312762471d69SBarry Smith PetscFunctionBegin; 312862471d69SBarry Smith if (!A->assembled) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_SUP,"Matrix must be assembled"); 312962471d69SBarry Smith 313062471d69SBarry Smith ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 313162471d69SBarry Smith ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 31326d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 31336d0a4a0eSHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr); 313462471d69SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 313562471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 313662471d69SBarry Smith 31376bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 31386bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 3139ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 314062471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 314162471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 314262471d69SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 314362471d69SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31446a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31456a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 314662471d69SBarry Smith if (reuse == MAT_REUSE_MATRIX) { 314762471d69SBarry Smith ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); 314862471d69SBarry Smith } else { 314962471d69SBarry Smith *newmat = B; 315062471d69SBarry Smith } 315162471d69SBarry Smith PetscFunctionReturn(0); 315262471d69SBarry Smith } 315362471d69SBarry Smith EXTERN_C_END 315462471d69SBarry Smith 3155450b117fSShri Abhyankar EXTERN_C_BEGIN 3156450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 3157bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 3158450b117fSShri Abhyankar #endif 3159450b117fSShri Abhyankar EXTERN_C_END 3160450b117fSShri Abhyankar 31610bad9183SKris Buschelman /*MC 3162fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 31630bad9183SKris Buschelman 31640bad9183SKris Buschelman Options Database Keys: 31658c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 31668c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 31678c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31680bad9183SKris Buschelman 31690bad9183SKris Buschelman Level: beginner 31700bad9183SKris Buschelman 31710bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 31720bad9183SKris Buschelman M*/ 31730bad9183SKris Buschelman 317492b32695SKris Buschelman EXTERN_C_BEGIN 317519fd82e9SBarry Smith extern PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 3176c0cdd4a1SDahai Guo EXTERN_C_END 3177c0cdd4a1SDahai Guo 3178c0cdd4a1SDahai Guo EXTERN_C_BEGIN 3179a23d5eceSKris Buschelman #undef __FUNCT__ 31804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 31817087cfbeSBarry Smith PetscErrorCode MatCreate_MPIBAIJ(Mat B) 3182273d9f13SBarry Smith { 3183273d9f13SBarry Smith Mat_MPIBAIJ *b; 3184dfbe8321SBarry Smith PetscErrorCode ierr; 3185ace3abfcSBarry Smith PetscBool flg; 3186273d9f13SBarry Smith 3187273d9f13SBarry Smith PetscFunctionBegin; 318838f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 318982502324SSatish Balay B->data = (void*)b; 319082502324SSatish Balay 3191273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 3192273d9f13SBarry Smith B->assembled = PETSC_FALSE; 3193273d9f13SBarry Smith 3194273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 31957adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 31967adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 3197273d9f13SBarry Smith 3198273d9f13SBarry Smith /* build local table of row and column ownerships */ 3199899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 3200273d9f13SBarry Smith 3201273d9f13SBarry Smith /* build cache for off array entries formed */ 32027adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 3203273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 3204273d9f13SBarry Smith b->colmap = PETSC_NULL; 3205273d9f13SBarry Smith b->garray = PETSC_NULL; 3206273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 3207273d9f13SBarry Smith 3208273d9f13SBarry Smith /* stuff used in block assembly */ 3209273d9f13SBarry Smith b->barray = 0; 3210273d9f13SBarry Smith 3211273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 3212273d9f13SBarry Smith b->lvec = 0; 3213273d9f13SBarry Smith b->Mvctx = 0; 3214273d9f13SBarry Smith 3215273d9f13SBarry Smith /* stuff for MatGetRow() */ 3216273d9f13SBarry Smith b->rowindices = 0; 3217273d9f13SBarry Smith b->rowvalues = 0; 3218273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 3219273d9f13SBarry Smith 3220273d9f13SBarry Smith /* hash table stuff */ 3221273d9f13SBarry Smith b->ht = 0; 3222273d9f13SBarry Smith b->hd = 0; 3223273d9f13SBarry Smith b->ht_size = 0; 3224273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 3225273d9f13SBarry Smith b->ht_fact = 0; 3226273d9f13SBarry Smith b->ht_total_ct = 0; 3227273d9f13SBarry Smith b->ht_insert_ct = 0; 3228273d9f13SBarry Smith 32297a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 32307a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 32317a868f3eSHong Zhang 32327adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 3233acfcf0e5SJed Brown ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 3234273d9f13SBarry Smith if (flg) { 3235f6275e2eSBarry Smith PetscReal fact = 1.39; 32364e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 32378c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 3238273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 3239273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 32401e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3241273d9f13SBarry Smith } 32428c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 32438c07d4e3SBarry Smith 3244450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 3245bccb9932SShri Abhyankar ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr); 3246450b117fSShri Abhyankar #endif 324782094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 324882094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 324982094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 325062471d69SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiaij_C", 325162471d69SBarry Smith "MatConvert_MPIBAIJ_MPIAIJ", 325262471d69SBarry Smith MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 3253ad5247fdSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C", 3254ad5247fdSHong Zhang "MatConvert_MPIBAIJ_MPISBAIJ", 3255ad5247fdSHong Zhang MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 3256273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3257273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3258273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3259273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3260273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3261273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3262273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3263273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3264273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3265a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3266a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3267a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3268aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 326944ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3270aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 327192b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 327292b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 327392b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 32745bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 32755bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 32765bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 3277c0cdd4a1SDahai Guo ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C", 3278c0cdd4a1SDahai Guo "MatConvert_MPIBAIJ_MPIBSTRM", 3279c0cdd4a1SDahai Guo MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr); 328017667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3281273d9f13SBarry Smith PetscFunctionReturn(0); 3282273d9f13SBarry Smith } 3283273d9f13SBarry Smith EXTERN_C_END 3284273d9f13SBarry Smith 3285209238afSKris Buschelman /*MC 3286002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3287209238afSKris Buschelman 3288209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3289209238afSKris Buschelman and MATMPIBAIJ otherwise. 3290209238afSKris Buschelman 3291209238afSKris Buschelman Options Database Keys: 3292209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3293209238afSKris Buschelman 3294209238afSKris Buschelman Level: beginner 3295209238afSKris Buschelman 329669b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3297209238afSKris Buschelman M*/ 3298209238afSKris Buschelman 32994a2ae208SSatish Balay #undef __FUNCT__ 33004a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3301273d9f13SBarry Smith /*@C 3302aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3303273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3304273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3305273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3306273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3307273d9f13SBarry Smith 3308273d9f13SBarry Smith Collective on Mat 3309273d9f13SBarry Smith 3310273d9f13SBarry Smith Input Parameters: 3311273d9f13SBarry Smith + A - the matrix 3312273d9f13SBarry Smith . bs - size of blockk 3313273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3314273d9f13SBarry Smith submatrix (same for all local rows) 3315273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3316273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 331795742e49SBarry Smith row) or PETSC_NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 331895742e49SBarry Smith set it even if it is zero. 3319273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3320273d9f13SBarry Smith submatrix (same for all local rows). 3321273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3322273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3323273d9f13SBarry Smith each block row) or PETSC_NULL. 3324273d9f13SBarry Smith 332549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3326273d9f13SBarry Smith 3327273d9f13SBarry Smith Options Database Keys: 33288c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 33298c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3330273d9f13SBarry Smith 3331273d9f13SBarry Smith Notes: 3332273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3333273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3334273d9f13SBarry Smith 3335273d9f13SBarry Smith Storage Information: 3336273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3337273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3338273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3339273d9f13SBarry Smith local matrix (a rectangular submatrix). 3340273d9f13SBarry Smith 3341273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3342273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3343273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3344273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3345273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3346273d9f13SBarry Smith 3347273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3348273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3349273d9f13SBarry Smith 3350273d9f13SBarry Smith .vb 3351273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3352273d9f13SBarry Smith ------------------- 3353273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3354273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3355273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3356273d9f13SBarry Smith ------------------- 3357273d9f13SBarry Smith .ve 3358273d9f13SBarry Smith 3359273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3360273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3361273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3362273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3363273d9f13SBarry Smith 3364273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3365273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3366273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3367273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3368273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3369273d9f13SBarry Smith matrices. 3370273d9f13SBarry Smith 3371aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3372aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3373aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3374aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3375aa95bbe8SBarry Smith 3376273d9f13SBarry Smith Level: intermediate 3377273d9f13SBarry Smith 3378273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3379273d9f13SBarry Smith 3380ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3381273d9f13SBarry Smith @*/ 33827087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3383273d9f13SBarry Smith { 33844ac538c5SBarry Smith PetscErrorCode ierr; 3385273d9f13SBarry Smith 3386273d9f13SBarry Smith PetscFunctionBegin; 33876ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 33886ba663aaSJed Brown PetscValidType(B,1); 33896ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 33904ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3391273d9f13SBarry Smith PetscFunctionReturn(0); 3392273d9f13SBarry Smith } 3393273d9f13SBarry Smith 33944a2ae208SSatish Balay #undef __FUNCT__ 339569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ" 339679bdfe76SSatish Balay /*@C 339769b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 339879bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 339979bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 340079bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 340179bdfe76SSatish Balay performance can be increased by more than a factor of 50. 340279bdfe76SSatish Balay 3403db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3404db81eaa0SLois Curfman McInnes 340579bdfe76SSatish Balay Input Parameters: 3406db81eaa0SLois Curfman McInnes + comm - MPI communicator 340779bdfe76SSatish Balay . bs - size of blockk 340879bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 340992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 341092e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 341192e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 341292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 341392e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3414be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3415be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 341647a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 341779bdfe76SSatish Balay submatrix (same for all local rows) 341847a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 341992e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 342095742e49SBarry Smith row) or PETSC_NULL. If you plan to factor the matrix you must leave room for the diagonal entry 342195742e49SBarry Smith and set it even if it is zero. 342247a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 342379bdfe76SSatish Balay submatrix (same for all local rows). 342447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 342592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 342692e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 342779bdfe76SSatish Balay 342879bdfe76SSatish Balay Output Parameter: 342979bdfe76SSatish Balay . A - the matrix 343079bdfe76SSatish Balay 3431db81eaa0SLois Curfman McInnes Options Database Keys: 34328c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 34338c07d4e3SBarry Smith - -mat_use_hash_table <fact> 34343ffaccefSLois Curfman McInnes 3435175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3436ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3437175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3438175b88e8SBarry Smith 3439b259b22eSLois Curfman McInnes Notes: 344049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 344149a6f317SBarry Smith 344247a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 344347a75d0bSBarry Smith 344479bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 344579bdfe76SSatish Balay (possibly both). 344679bdfe76SSatish Balay 3447be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3448be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3449be79a94dSBarry Smith 345079bdfe76SSatish Balay Storage Information: 345179bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 345279bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 345379bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 345479bdfe76SSatish Balay local matrix (a rectangular submatrix). 345579bdfe76SSatish Balay 345679bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 345779bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 345879bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 345979bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 346079bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 346179bdfe76SSatish Balay 346279bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 346379bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 346479bdfe76SSatish Balay 3465db81eaa0SLois Curfman McInnes .vb 3466db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3467db81eaa0SLois Curfman McInnes ------------------- 3468db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3469db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3470db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3471db81eaa0SLois Curfman McInnes ------------------- 3472db81eaa0SLois Curfman McInnes .ve 347379bdfe76SSatish Balay 347479bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 347579bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 347679bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 347757b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 347879bdfe76SSatish Balay 3479d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3480d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 348179bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 348292e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 348392e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 34846da5968aSLois Curfman McInnes matrices. 348579bdfe76SSatish Balay 3486027ccd11SLois Curfman McInnes Level: intermediate 3487027ccd11SLois Curfman McInnes 348892e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 348979bdfe76SSatish Balay 349069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 349179bdfe76SSatish Balay @*/ 349269b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 349379bdfe76SSatish Balay { 34946849ba73SBarry Smith PetscErrorCode ierr; 3495b24ad042SBarry Smith PetscMPIInt size; 349679bdfe76SSatish Balay 3497d64ed03dSBarry Smith PetscFunctionBegin; 3498f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3499f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3500d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3501273d9f13SBarry Smith if (size > 1) { 3502273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3503273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3504273d9f13SBarry Smith } else { 3505273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3506273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 35073914022bSBarry Smith } 35083a40ed3dSBarry Smith PetscFunctionReturn(0); 350979bdfe76SSatish Balay } 3510026e39d0SSatish Balay 35114a2ae208SSatish Balay #undef __FUNCT__ 35124a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 35136849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 35140ac07820SSatish Balay { 35150ac07820SSatish Balay Mat mat; 35160ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3517dfbe8321SBarry Smith PetscErrorCode ierr; 3518b24ad042SBarry Smith PetscInt len=0; 35190ac07820SSatish Balay 3520d64ed03dSBarry Smith PetscFunctionBegin; 35210ac07820SSatish Balay *newmat = 0; 35227adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3523d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 35247adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 35251d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 35267fff6886SHong Zhang 3527d5f3da31SBarry Smith mat->factortype = matin->factortype; 3528273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 35290ac07820SSatish Balay mat->assembled = PETSC_TRUE; 35307fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 35317fff6886SHong Zhang 3532273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3533d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 35340ac07820SSatish Balay a->bs2 = oldmat->bs2; 35350ac07820SSatish Balay a->mbs = oldmat->mbs; 35360ac07820SSatish Balay a->nbs = oldmat->nbs; 35370ac07820SSatish Balay a->Mbs = oldmat->Mbs; 35380ac07820SSatish Balay a->Nbs = oldmat->Nbs; 35390ac07820SSatish Balay 35401e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 35411e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3542899cda47SBarry Smith 35430ac07820SSatish Balay a->size = oldmat->size; 35440ac07820SSatish Balay a->rank = oldmat->rank; 3545aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3546aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3547aef5e8e0SSatish Balay a->rowindices = 0; 35480ac07820SSatish Balay a->rowvalues = 0; 35490ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 355030793edcSSatish Balay a->barray = 0; 3551899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3552899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3553899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3554899cda47SBarry Smith a->cendbs = oldmat->cendbs; 35550ac07820SSatish Balay 3556133cdb44SSatish Balay /* hash table stuff */ 3557133cdb44SSatish Balay a->ht = 0; 3558133cdb44SSatish Balay a->hd = 0; 3559133cdb44SSatish Balay a->ht_size = 0; 3560133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 356125fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3562133cdb44SSatish Balay a->ht_total_ct = 0; 3563133cdb44SSatish Balay a->ht_insert_ct = 0; 3564133cdb44SSatish Balay 3565899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 35660ac07820SSatish Balay if (oldmat->colmap) { 3567aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 35680f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 356948e59246SSatish Balay #else 3570b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 357152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3572b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 357348e59246SSatish Balay #endif 35740ac07820SSatish Balay } else a->colmap = 0; 35754beb1cfeSHong Zhang 35760ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3577b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 357852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3579b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 35800ac07820SSatish Balay } else a->garray = 0; 35810ac07820SSatish Balay 3582533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 35830ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 358452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 35850ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 358652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 35877fff6886SHong Zhang 35882e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 358952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 35902e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 359152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 3592140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 35930ac07820SSatish Balay *newmat = mat; 35944beb1cfeSHong Zhang 35953a40ed3dSBarry Smith PetscFunctionReturn(0); 35960ac07820SSatish Balay } 359757b952d6SSatish Balay 35984a2ae208SSatish Balay #undef __FUNCT__ 35995bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ" 3600112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 36014683f7a4SShri Abhyankar { 36024683f7a4SShri Abhyankar PetscErrorCode ierr; 36034683f7a4SShri Abhyankar int fd; 36044683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 36054683f7a4SShri Abhyankar PetscScalar *vals,*buf; 36064683f7a4SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 36074683f7a4SShri Abhyankar MPI_Status status; 36084683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 36094683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 36104683f7a4SShri Abhyankar PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 36114683f7a4SShri Abhyankar PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 36124683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 36134683f7a4SShri Abhyankar PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 36144683f7a4SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols; 36154683f7a4SShri Abhyankar 36164683f7a4SShri Abhyankar PetscFunctionBegin; 36174683f7a4SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 36184683f7a4SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 36194683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 36204683f7a4SShri Abhyankar 36214683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 36224683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 36234683f7a4SShri Abhyankar if (!rank) { 36244683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 36254683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 36264683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 36274683f7a4SShri Abhyankar } 36284683f7a4SShri Abhyankar 36294683f7a4SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 36304683f7a4SShri Abhyankar 36314683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 36324683f7a4SShri Abhyankar M = header[1]; N = header[2]; 36334683f7a4SShri Abhyankar 36344683f7a4SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 36354683f7a4SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 36364683f7a4SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 36374683f7a4SShri Abhyankar 36384683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 36394683f7a4SShri Abhyankar if (sizesset) { 36404683f7a4SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 36414683f7a4SShri Abhyankar } 3642abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 3643abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 36444683f7a4SShri Abhyankar 36454683f7a4SShri Abhyankar if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices"); 36464683f7a4SShri Abhyankar 36474683f7a4SShri Abhyankar /* 36484683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 36494683f7a4SShri Abhyankar divisible by the blocksize 36504683f7a4SShri Abhyankar */ 36514683f7a4SShri Abhyankar Mbs = M/bs; 36524683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 36534683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 36544683f7a4SShri Abhyankar else Mbs++; 36554683f7a4SShri Abhyankar if (extra_rows && !rank) { 36564683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 36574683f7a4SShri Abhyankar } 36584683f7a4SShri Abhyankar 36594683f7a4SShri Abhyankar /* determine ownership of all rows */ 36604683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 36614683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 36624683f7a4SShri Abhyankar m = mbs*bs; 36634683f7a4SShri Abhyankar } else { /* User set */ 36644683f7a4SShri Abhyankar m = newmat->rmap->n; 36654683f7a4SShri Abhyankar mbs = m/bs; 36664683f7a4SShri Abhyankar } 36674683f7a4SShri Abhyankar ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 36684683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 36694683f7a4SShri Abhyankar 36704683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 36714683f7a4SShri Abhyankar if (!rank) { 36724683f7a4SShri Abhyankar mmax = rowners[1]; 36731251c579SMatthew G Knepley for (i=2; i<=size; i++) { 36744683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 36754683f7a4SShri Abhyankar } 36764683f7a4SShri Abhyankar mmax*=bs; 36774683f7a4SShri Abhyankar } else mmax = m; 36784683f7a4SShri Abhyankar 36794683f7a4SShri Abhyankar rowners[0] = 0; 36804683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 36814683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 36824683f7a4SShri Abhyankar rstart = rowners[rank]; 36834683f7a4SShri Abhyankar rend = rowners[rank+1]; 36844683f7a4SShri Abhyankar 36854683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 36864683f7a4SShri Abhyankar ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 36874683f7a4SShri Abhyankar if (!rank) { 36884683f7a4SShri Abhyankar mend = m; 36894683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 36904683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 36914683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 36924683f7a4SShri Abhyankar ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 36934683f7a4SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 36944683f7a4SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 36954683f7a4SShri Abhyankar for (j=0; j<m; j++) { 36964683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 36974683f7a4SShri Abhyankar } 36984683f7a4SShri Abhyankar for (i=1; i<size; i++) { 36994683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 37004683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 37014683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 37024683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 37034683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 37044683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 37054683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 37064683f7a4SShri Abhyankar } 37074683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 37084683f7a4SShri Abhyankar } 37094683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 37104683f7a4SShri Abhyankar } else { 37114683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 37124683f7a4SShri Abhyankar } 37134683f7a4SShri Abhyankar 37144683f7a4SShri Abhyankar if (!rank) { 37154683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 37164683f7a4SShri Abhyankar maxnz = procsnz[0]; 37174683f7a4SShri Abhyankar for (i=1; i<size; i++) { 37184683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 37194683f7a4SShri Abhyankar } 37204683f7a4SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 37214683f7a4SShri Abhyankar 37224683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 37234683f7a4SShri Abhyankar nz = procsnz[0]; 37244683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 37254683f7a4SShri Abhyankar mycols = ibuf; 37264683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 37274683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 37284683f7a4SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 37294683f7a4SShri Abhyankar 37304683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 37314683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 37324683f7a4SShri Abhyankar nz = procsnz[i]; 37334683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 37344683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 37354683f7a4SShri Abhyankar } 37364683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 37374683f7a4SShri Abhyankar if (size != 1) { 37384683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 37394683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 37404683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 37414683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 37424683f7a4SShri Abhyankar } 37434683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 37444683f7a4SShri Abhyankar } else { 37454683f7a4SShri Abhyankar /* determine buffer space needed for message */ 37464683f7a4SShri Abhyankar nz = 0; 37474683f7a4SShri Abhyankar for (i=0; i<m; i++) { 37484683f7a4SShri Abhyankar nz += locrowlens[i]; 37494683f7a4SShri Abhyankar } 37504683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 37514683f7a4SShri Abhyankar mycols = ibuf; 37524683f7a4SShri Abhyankar /* receive message of column indices*/ 37534683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 37544683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 37554683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 37564683f7a4SShri Abhyankar } 37574683f7a4SShri Abhyankar 37584683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 37594683f7a4SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 37604683f7a4SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 37614683f7a4SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 37624683f7a4SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 37634683f7a4SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 37644683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 37654683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 37664683f7a4SShri Abhyankar dcount = 0; 37674683f7a4SShri Abhyankar odcount = 0; 37684683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 37694683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 37704683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 37714683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 37724683f7a4SShri Abhyankar if (!mask[tmp]) { 37734683f7a4SShri Abhyankar mask[tmp] = 1; 37744683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 37754683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 37764683f7a4SShri Abhyankar } 37774683f7a4SShri Abhyankar } 37784683f7a4SShri Abhyankar rowcount++; 37794683f7a4SShri Abhyankar } 37804683f7a4SShri Abhyankar 37814683f7a4SShri Abhyankar dlens[i] = dcount; 37824683f7a4SShri Abhyankar odlens[i] = odcount; 37834683f7a4SShri Abhyankar 37844683f7a4SShri Abhyankar /* zero out the mask elements we set */ 37854683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 37864683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 37874683f7a4SShri Abhyankar } 37884683f7a4SShri Abhyankar 37894683f7a4SShri Abhyankar 37904683f7a4SShri Abhyankar if (!sizesset) { 37914683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 37924683f7a4SShri Abhyankar } 37934683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 37944683f7a4SShri Abhyankar 37954683f7a4SShri Abhyankar if (!rank) { 37964683f7a4SShri Abhyankar ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 37974683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 37984683f7a4SShri Abhyankar nz = procsnz[0]; 37994683f7a4SShri Abhyankar vals = buf; 38004683f7a4SShri Abhyankar mycols = ibuf; 38014683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 38024683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 38034683f7a4SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 38044683f7a4SShri Abhyankar 38054683f7a4SShri Abhyankar /* insert into matrix */ 38064683f7a4SShri Abhyankar jj = rstart*bs; 38074683f7a4SShri Abhyankar for (i=0; i<m; i++) { 38084683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 38094683f7a4SShri Abhyankar mycols += locrowlens[i]; 38104683f7a4SShri Abhyankar vals += locrowlens[i]; 38114683f7a4SShri Abhyankar jj++; 38124683f7a4SShri Abhyankar } 38134683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 38144683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 38154683f7a4SShri Abhyankar nz = procsnz[i]; 38164683f7a4SShri Abhyankar vals = buf; 38174683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3818479e424cSMichael Lange ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 38194683f7a4SShri Abhyankar } 38204683f7a4SShri Abhyankar /* the last proc */ 38214683f7a4SShri Abhyankar if (size != 1) { 38224683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 38234683f7a4SShri Abhyankar vals = buf; 38244683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 38254683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 3826479e424cSMichael Lange ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 38274683f7a4SShri Abhyankar } 38284683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 38294683f7a4SShri Abhyankar } else { 38304683f7a4SShri Abhyankar /* receive numeric values */ 38314683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 38324683f7a4SShri Abhyankar 38334683f7a4SShri Abhyankar /* receive message of values*/ 38344683f7a4SShri Abhyankar vals = buf; 38354683f7a4SShri Abhyankar mycols = ibuf; 3836479e424cSMichael Lange ierr = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 38374683f7a4SShri Abhyankar 38384683f7a4SShri Abhyankar /* insert into matrix */ 38394683f7a4SShri Abhyankar jj = rstart*bs; 38404683f7a4SShri Abhyankar for (i=0; i<m; i++) { 38414683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 38424683f7a4SShri Abhyankar mycols += locrowlens[i]; 38434683f7a4SShri Abhyankar vals += locrowlens[i]; 38444683f7a4SShri Abhyankar jj++; 38454683f7a4SShri Abhyankar } 38464683f7a4SShri Abhyankar } 38474683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 38484683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 38494683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 38504683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 38514683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 38524683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 38534683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 38544683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 38554683f7a4SShri Abhyankar 38564683f7a4SShri Abhyankar PetscFunctionReturn(0); 38574683f7a4SShri Abhyankar } 38584683f7a4SShri Abhyankar 38594683f7a4SShri Abhyankar #undef __FUNCT__ 38604a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3861133cdb44SSatish Balay /*@ 3862133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3863133cdb44SSatish Balay 3864133cdb44SSatish Balay Input Parameters: 3865133cdb44SSatish Balay . mat - the matrix 3866133cdb44SSatish Balay . fact - factor 3867133cdb44SSatish Balay 3868c5eb9154SBarry Smith Not Collective, each process can use a different factor 3869fee21e36SBarry Smith 38708c890885SBarry Smith Level: advanced 38718c890885SBarry Smith 3872133cdb44SSatish Balay Notes: 38738c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3874133cdb44SSatish Balay 3875133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3876133cdb44SSatish Balay 3877133cdb44SSatish Balay .seealso: MatSetOption() 3878133cdb44SSatish Balay @*/ 38797087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3880133cdb44SSatish Balay { 38814ac538c5SBarry Smith PetscErrorCode ierr; 38825bf65638SKris Buschelman 38835bf65638SKris Buschelman PetscFunctionBegin; 38844ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 38855bf65638SKris Buschelman PetscFunctionReturn(0); 38865bf65638SKris Buschelman } 38875bf65638SKris Buschelman 3888be1d678aSKris Buschelman EXTERN_C_BEGIN 38895bf65638SKris Buschelman #undef __FUNCT__ 38905bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 38917087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 38925bf65638SKris Buschelman { 389325fdafccSSatish Balay Mat_MPIBAIJ *baij; 3894133cdb44SSatish Balay 3895133cdb44SSatish Balay PetscFunctionBegin; 3896133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3897133cdb44SSatish Balay baij->ht_fact = fact; 3898133cdb44SSatish Balay PetscFunctionReturn(0); 3899133cdb44SSatish Balay } 3900be1d678aSKris Buschelman EXTERN_C_END 3901f2a5309cSSatish Balay 39024a2ae208SSatish Balay #undef __FUNCT__ 39034a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 39049230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3905f2a5309cSSatish Balay { 3906f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3907f2a5309cSSatish Balay PetscFunctionBegin; 3908f2a5309cSSatish Balay *Ad = a->A; 3909f2a5309cSSatish Balay *Ao = a->B; 3910195d93cdSBarry Smith *colmap = a->garray; 3911f2a5309cSSatish Balay PetscFunctionReturn(0); 3912f2a5309cSSatish Balay } 391385535b8eSBarry Smith 391485535b8eSBarry Smith /* 391585535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 391685535b8eSBarry Smith */ 391785535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 391885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 391985535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 392085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 392185535b8eSBarry Smith #endif 392285535b8eSBarry Smith 392385535b8eSBarry Smith #undef __FUNCT__ 392485535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 392585535b8eSBarry Smith /*@C 392685535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 392785535b8eSBarry Smith 392885535b8eSBarry Smith Collective on Mat 392985535b8eSBarry Smith 393085535b8eSBarry Smith Input Parameters: 393185535b8eSBarry Smith + mat - the matrix 393285535b8eSBarry Smith . min - number of input rows 393385535b8eSBarry Smith . im - input rows 393485535b8eSBarry Smith . nin - number of input columns 393585535b8eSBarry Smith . in - input columns 393685535b8eSBarry Smith . v - numerical values input 393785535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 393885535b8eSBarry Smith 393985535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 394085535b8eSBarry Smith 394185535b8eSBarry Smith Level: advanced 394285535b8eSBarry Smith 394385535b8eSBarry Smith .seealso: MatSetValuesBlocked() 394485535b8eSBarry Smith @*/ 394585535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 394685535b8eSBarry Smith { 394785535b8eSBarry Smith /* convert input arguments to C version */ 394885535b8eSBarry Smith Mat mat = *matin; 394985535b8eSBarry Smith PetscInt m = *min, n = *nin; 395085535b8eSBarry Smith InsertMode addv = *addvin; 395185535b8eSBarry Smith 395285535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 395385535b8eSBarry Smith const MatScalar *value; 395485535b8eSBarry Smith MatScalar *barray=baij->barray; 3955ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 395685535b8eSBarry Smith PetscErrorCode ierr; 395785535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 395885535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3959d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 396085535b8eSBarry Smith 396185535b8eSBarry Smith PetscFunctionBegin; 396285535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 396385535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 396485535b8eSBarry Smith mat->insertmode = addv; 396585535b8eSBarry Smith } 396685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3967e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3968e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 396985535b8eSBarry Smith #endif 397085535b8eSBarry Smith if (mat->assembled) { 397185535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 397285535b8eSBarry Smith mat->assembled = PETSC_FALSE; 397385535b8eSBarry Smith } 397485535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 397585535b8eSBarry Smith 397685535b8eSBarry Smith 397785535b8eSBarry Smith if (!barray) { 397885535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 397985535b8eSBarry Smith baij->barray = barray; 398085535b8eSBarry Smith } 398185535b8eSBarry Smith 398285535b8eSBarry Smith if (roworiented) { 398385535b8eSBarry Smith stepval = (n-1)*bs; 398485535b8eSBarry Smith } else { 398585535b8eSBarry Smith stepval = (m-1)*bs; 398685535b8eSBarry Smith } 398785535b8eSBarry Smith for (i=0; i<m; i++) { 398885535b8eSBarry Smith if (im[i] < 0) continue; 398985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3990e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 399185535b8eSBarry Smith #endif 399285535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 399385535b8eSBarry Smith row = im[i] - rstart; 399485535b8eSBarry Smith for (j=0; j<n; j++) { 399585535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 399685535b8eSBarry Smith if ((roworiented) && (n == 1)) { 399785535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 399885535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 399985535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 400085535b8eSBarry Smith } else { /* Here a copy is required */ 400185535b8eSBarry Smith if (roworiented) { 400285535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 400385535b8eSBarry Smith } else { 400485535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 400585535b8eSBarry Smith } 400685535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 400785535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 400885535b8eSBarry Smith *barray++ = *value++; 400985535b8eSBarry Smith } 401085535b8eSBarry Smith } 401185535b8eSBarry Smith barray -=bs2; 401285535b8eSBarry Smith } 401385535b8eSBarry Smith 401485535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 401585535b8eSBarry Smith col = in[j] - cstart; 401697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 401785535b8eSBarry Smith } 401885535b8eSBarry Smith else if (in[j] < 0) continue; 401985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 4020cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 402185535b8eSBarry Smith #endif 402285535b8eSBarry Smith else { 402385535b8eSBarry Smith if (mat->was_assembled) { 402485535b8eSBarry Smith if (!baij->colmap) { 4025ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 402685535b8eSBarry Smith } 402785535b8eSBarry Smith 402885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 402985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 403085535b8eSBarry Smith { PetscInt data; 403185535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4032e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 403385535b8eSBarry Smith } 403485535b8eSBarry Smith #else 4035e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 403685535b8eSBarry Smith #endif 403785535b8eSBarry Smith #endif 403885535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 403985535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 404085535b8eSBarry Smith col = (col - 1)/bs; 404185535b8eSBarry Smith #else 404285535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 404385535b8eSBarry Smith #endif 404485535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4045ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 404685535b8eSBarry Smith col = in[j]; 404785535b8eSBarry Smith } 404885535b8eSBarry Smith } 404985535b8eSBarry Smith else col = in[j]; 405097e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 405185535b8eSBarry Smith } 405285535b8eSBarry Smith } 405385535b8eSBarry Smith } else { 405485535b8eSBarry Smith if (!baij->donotstash) { 405585535b8eSBarry Smith if (roworiented) { 405685535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 405785535b8eSBarry Smith } else { 405885535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 405985535b8eSBarry Smith } 406085535b8eSBarry Smith } 406185535b8eSBarry Smith } 406285535b8eSBarry Smith } 406385535b8eSBarry Smith 406485535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 406585535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 406685535b8eSBarry Smith PetscFunctionReturn(0); 406785535b8eSBarry Smith } 4068dfb205c3SBarry Smith 4069dfb205c3SBarry Smith #undef __FUNCT__ 4070dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays" 4071dfb205c3SBarry Smith /*@ 4072dfb205c3SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard 4073dfb205c3SBarry Smith CSR format the local rows. 4074dfb205c3SBarry Smith 4075dfb205c3SBarry Smith Collective on MPI_Comm 4076dfb205c3SBarry Smith 4077dfb205c3SBarry Smith Input Parameters: 4078dfb205c3SBarry Smith + comm - MPI communicator 4079dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 4080dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 4081dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 4082dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 4083dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 4084dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 4085dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 4086dfb205c3SBarry Smith . i - row indices 4087dfb205c3SBarry Smith . j - column indices 4088dfb205c3SBarry Smith - a - matrix values 4089dfb205c3SBarry Smith 4090dfb205c3SBarry Smith Output Parameter: 4091dfb205c3SBarry Smith . mat - the matrix 4092dfb205c3SBarry Smith 4093dfb205c3SBarry Smith Level: intermediate 4094dfb205c3SBarry Smith 4095dfb205c3SBarry Smith Notes: 4096dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 4097dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 4098dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 4099dfb205c3SBarry Smith 4100dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 4101dfb205c3SBarry Smith 4102dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 4103dfb205c3SBarry Smith 4104dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 410569b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 4106dfb205c3SBarry Smith @*/ 41077087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 4108dfb205c3SBarry Smith { 4109dfb205c3SBarry Smith PetscErrorCode ierr; 4110dfb205c3SBarry Smith 4111dfb205c3SBarry Smith 4112dfb205c3SBarry Smith PetscFunctionBegin; 4113f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 4114dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 4115dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 4116dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 4117dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 4118dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 4119dfb205c3SBarry Smith PetscFunctionReturn(0); 4120dfb205c3SBarry Smith } 4121