xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision c5df96a59d3f7e354f9770fb35f00818af2dc9fc)
179bdfe76SSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
3c6db04a5SJed Brown #include <petscblaslapack.h>
479bdfe76SSatish Balay 
509573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPIBAIJ(Mat);
709573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
809573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
909573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1009573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
1109573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
1209573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar,Vec,Vec);
1393fea6afSBarry Smith 
144a2ae208SSatish Balay #undef __FUNCT__
15985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
16985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
177843d17aSBarry Smith {
187843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
19dfbe8321SBarry Smith   PetscErrorCode ierr;
20985db425SBarry Smith   PetscInt       i,*idxb = 0;
2187828ca2SBarry Smith   PetscScalar    *va,*vb;
227843d17aSBarry Smith   Vec            vtmp;
237843d17aSBarry Smith 
247843d17aSBarry Smith   PetscFunctionBegin;
25985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
261ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
27985db425SBarry Smith   if (idx) {
28192daf7cSBarry Smith     for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;}
29985db425SBarry Smith   }
307843d17aSBarry Smith 
31d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
32d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
33985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
341ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
357843d17aSBarry Smith 
36d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
37d0f46423SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);}
387843d17aSBarry Smith   }
397843d17aSBarry Smith 
401ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
411ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
42c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
447843d17aSBarry Smith   PetscFunctionReturn(0);
457843d17aSBarry Smith }
467843d17aSBarry Smith 
477fc3c18eSBarry Smith EXTERN_C_BEGIN
484a2ae208SSatish Balay #undef __FUNCT__
494a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
507087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
517fc3c18eSBarry Smith {
527fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
53dfbe8321SBarry Smith   PetscErrorCode ierr;
547fc3c18eSBarry Smith 
557fc3c18eSBarry Smith   PetscFunctionBegin;
567fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
577fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
587fc3c18eSBarry Smith   PetscFunctionReturn(0);
597fc3c18eSBarry Smith }
607fc3c18eSBarry Smith EXTERN_C_END
617fc3c18eSBarry Smith 
627fc3c18eSBarry Smith EXTERN_C_BEGIN
634a2ae208SSatish Balay #undef __FUNCT__
644a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
657087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
667fc3c18eSBarry Smith {
677fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
68dfbe8321SBarry Smith   PetscErrorCode ierr;
697fc3c18eSBarry Smith 
707fc3c18eSBarry Smith   PetscFunctionBegin;
717fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
727fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
737fc3c18eSBarry Smith   PetscFunctionReturn(0);
747fc3c18eSBarry Smith }
757fc3c18eSBarry Smith EXTERN_C_END
767fc3c18eSBarry Smith 
77537820f0SBarry Smith /*
78537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
80e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
8157b952d6SSatish Balay    length of colmap equals the global matrix length.
8257b952d6SSatish Balay */
834a2ae208SSatish Balay #undef __FUNCT__
84ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private"
85ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
8657b952d6SSatish Balay {
8757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
8857b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
896849ba73SBarry Smith   PetscErrorCode ierr;
90d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9157b952d6SSatish Balay 
92d64ed03dSBarry Smith   PetscFunctionBegin;
93aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
94e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
9548e59246SSatish Balay   for (i=0; i<nbs; i++) {
963861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
9748e59246SSatish Balay   }
9848e59246SSatish Balay #else
99b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10052e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
101b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
102928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10348e59246SSatish Balay #endif
1043a40ed3dSBarry Smith   PetscFunctionReturn(0);
10557b952d6SSatish Balay }
10657b952d6SSatish Balay 
107f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
10880c1aa95SSatish Balay { \
10980c1aa95SSatish Balay  \
11080c1aa95SSatish Balay     brow = row/bs;  \
11180c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
112ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11380c1aa95SSatish Balay       bcol = col/bs; \
11480c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
115ab26458aSBarry Smith       low = 0; high = nrow; \
116ab26458aSBarry Smith       while (high-low > 3) { \
117ab26458aSBarry Smith         t = (low+high)/2; \
118ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
119ab26458aSBarry Smith         else              low  = t; \
120ab26458aSBarry Smith       } \
121ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12280c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12380c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12480c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
125eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
126eada6651SSatish Balay           else                    *bap  = value;  \
127ac7a638eSSatish Balay           goto a_noinsert; \
12880c1aa95SSatish Balay         } \
12980c1aa95SSatish Balay       } \
13089280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
131e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
132fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13380c1aa95SSatish Balay       N = nrow++ - 1;  \
13480c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
13580c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
13680c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1373eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13880c1aa95SSatish Balay       } \
1393eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14080c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14180c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
142ac7a638eSSatish Balay       a_noinsert:; \
14380c1aa95SSatish Balay     ailen[brow] = nrow; \
14480c1aa95SSatish Balay }
14557b952d6SSatish Balay 
146ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
147ac7a638eSSatish Balay { \
148ac7a638eSSatish Balay     brow = row/bs;  \
149ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
150ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
151ac7a638eSSatish Balay       bcol = col/bs; \
152ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
153ac7a638eSSatish Balay       low = 0; high = nrow; \
154ac7a638eSSatish Balay       while (high-low > 3) { \
155ac7a638eSSatish Balay         t = (low+high)/2; \
156ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
157ac7a638eSSatish Balay         else              low  = t; \
158ac7a638eSSatish Balay       } \
159ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
160ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
161ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
162ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
163ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
164ac7a638eSSatish Balay           else                    *bap  = value;  \
165ac7a638eSSatish Balay           goto b_noinsert; \
166ac7a638eSSatish Balay         } \
167ac7a638eSSatish Balay       } \
16889280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
169e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
170fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
171085a36d4SBarry Smith       CHKMEMQ;\
172ac7a638eSSatish Balay       N = nrow++ - 1;  \
173ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
174ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
175ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1763eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
177ac7a638eSSatish Balay       } \
1783eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
179ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
180ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
181ac7a638eSSatish Balay       b_noinsert:; \
182ac7a638eSSatish Balay     bilen[brow] = nrow; \
183ac7a638eSSatish Balay }
184ac7a638eSSatish Balay 
1854a2ae208SSatish Balay #undef __FUNCT__
1864a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
187b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
18857b952d6SSatish Balay {
18957b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19093fea6afSBarry Smith   MatScalar      value;
191ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
192dfbe8321SBarry Smith   PetscErrorCode ierr;
193b24ad042SBarry Smith   PetscInt       i,j,row,col;
194d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
195d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
196d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
19757b952d6SSatish Balay 
198eada6651SSatish Balay   /* Some Variables required in the macro */
19980c1aa95SSatish Balay   Mat            A = baij->A;
20080c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
201b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2023eda8832SBarry Smith   MatScalar      *aa=a->a;
203ac7a638eSSatish Balay 
204ac7a638eSSatish Balay   Mat            B = baij->B;
205ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
206b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2073eda8832SBarry Smith   MatScalar      *ba=b->a;
208ac7a638eSSatish Balay 
209b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
210b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2113eda8832SBarry Smith   MatScalar      *ap,*bap;
21280c1aa95SSatish Balay 
213d64ed03dSBarry Smith   PetscFunctionBegin;
21471fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
21557b952d6SSatish Balay   for (i=0; i<m; i++) {
2165ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
218e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
219639f9d9dSBarry Smith #endif
22057b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22157b952d6SSatish Balay       row = im[i] - rstart_orig;
22257b952d6SSatish Balay       for (j=0; j<n; j++) {
22357b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
22457b952d6SSatish Balay           col = in[j] - cstart_orig;
225db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
226db4deed7SKarl Rupp           else             value = v[i+j*m];
227f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
22880c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
22973959e64SBarry Smith         } else if (in[j] < 0) continue;
2302515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
231660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
232639f9d9dSBarry Smith #endif
23357b952d6SSatish Balay         else {
23457b952d6SSatish Balay           if (mat->was_assembled) {
235905e6a2fSBarry Smith             if (!baij->colmap) {
236ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
237905e6a2fSBarry Smith             }
238aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2390f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
240bba1ac68SSatish Balay             col  = col - 1;
24148e59246SSatish Balay #else
242bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24348e59246SSatish Balay #endif
244c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
245ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2468295de27SSatish Balay               col =  in[j];
2479bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2489bf004c3SSatish Balay               B = baij->B;
2499bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2509bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2519bf004c3SSatish Balay               ba=b->a;
252c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
253c9ef50b2SBarry Smith             else col += in[j]%bs;
2548295de27SSatish Balay           } else col = in[j];
255db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
256db4deed7SKarl Rupp           else             value = v[i+j*m];
25790da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25890da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25957b952d6SSatish Balay         }
26057b952d6SSatish Balay       }
261d64ed03dSBarry Smith     } else {
2624cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
26390f02eecSBarry Smith       if (!baij->donotstash) {
2645080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
265ff2fd236SBarry Smith         if (roworiented) {
266b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
267ff2fd236SBarry Smith         } else {
268b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26957b952d6SSatish Balay         }
27057b952d6SSatish Balay       }
27157b952d6SSatish Balay     }
27290f02eecSBarry Smith   }
2733a40ed3dSBarry Smith   PetscFunctionReturn(0);
27457b952d6SSatish Balay }
27557b952d6SSatish Balay 
2764a2ae208SSatish Balay #undef __FUNCT__
27797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
279ab26458aSBarry Smith {
280ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
281dd6ea824SBarry Smith   const PetscScalar *value;
282f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
283ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
284dfbe8321SBarry Smith   PetscErrorCode    ierr;
285899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
286899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
287d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
288ab26458aSBarry Smith 
289b16ae2b1SBarry Smith   PetscFunctionBegin;
29030793edcSSatish Balay   if (!barray) {
29182502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29282502324SSatish Balay     baij->barray = barray;
29330793edcSSatish Balay   }
29430793edcSSatish Balay 
295ab26458aSBarry Smith   if (roworiented) {
296ab26458aSBarry Smith     stepval = (n-1)*bs;
297ab26458aSBarry Smith   } else {
298ab26458aSBarry Smith     stepval = (m-1)*bs;
299ab26458aSBarry Smith   }
300ab26458aSBarry Smith   for (i=0; i<m; i++) {
3015ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
303e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
304ab26458aSBarry Smith #endif
305ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
306ab26458aSBarry Smith       row = im[i] - rstart;
307ab26458aSBarry Smith       for (j=0; j<n; j++) {
30815b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30915b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
310f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
31115b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
312f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31315b57d14SSatish Balay         } else { /* Here a copy is required */
314ab26458aSBarry Smith           if (roworiented) {
31553ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
316ab26458aSBarry Smith           } else {
31753ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
318abef11f7SSatish Balay           }
31953ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
32047513183SBarry Smith             for (jj=0; jj<bs; jj++) {
32153ef36baSBarry Smith               barray[jj]  = value[jj];
32247513183SBarry Smith             }
32353ef36baSBarry Smith             barray += bs;
32447513183SBarry Smith           }
32530793edcSSatish Balay           barray -= bs2;
32615b57d14SSatish Balay         }
327abef11f7SSatish Balay 
328abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
329abef11f7SSatish Balay           col  = in[j] - cstart;
33097e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
331ab26458aSBarry Smith         }
3325ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
334cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
335ab26458aSBarry Smith #endif
336ab26458aSBarry Smith         else {
337ab26458aSBarry Smith           if (mat->was_assembled) {
338ab26458aSBarry Smith             if (!baij->colmap) {
339ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
340ab26458aSBarry Smith             }
341a5eb4965SSatish Balay 
3422515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
343aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
344b24ad042SBarry Smith             { PetscInt data;
3450f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
346e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
347fa46199cSSatish Balay             }
34848e59246SSatish Balay #else
349e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
350a5eb4965SSatish Balay #endif
35148e59246SSatish Balay #endif
352aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3530f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
354fa46199cSSatish Balay             col  = (col - 1)/bs;
35548e59246SSatish Balay #else
356a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35748e59246SSatish Balay #endif
3580e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
359ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
360ab26458aSBarry Smith               col =  in[j];
3610e9bae81SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]);
362db4deed7SKarl Rupp           } else col = in[j];
36397e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
364ab26458aSBarry Smith         }
365ab26458aSBarry Smith       }
366d64ed03dSBarry Smith     } else {
3674cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
368ab26458aSBarry Smith       if (!baij->donotstash) {
369ff2fd236SBarry Smith         if (roworiented) {
3706fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
371ff2fd236SBarry Smith         } else {
3726fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
373ff2fd236SBarry Smith         }
374abef11f7SSatish Balay       }
375ab26458aSBarry Smith     }
376ab26458aSBarry Smith   }
3773a40ed3dSBarry Smith   PetscFunctionReturn(0);
378ab26458aSBarry Smith }
3796fa18ffdSBarry Smith 
3800bdbc534SSatish Balay #define HASH_KEY 0.6180339887
381b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
382b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
383b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3844a2ae208SSatish Balay #undef __FUNCT__
38597e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38697e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3870bdbc534SSatish Balay {
3880bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
389ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
390dfbe8321SBarry Smith   PetscErrorCode ierr;
391b24ad042SBarry Smith   PetscInt       i,j,row,col;
392d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
393d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,Nbs=baij->Nbs;
394d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
395329f5518SBarry Smith   PetscReal      tmp;
3963eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3972515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
398b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3994a15367fSSatish Balay #endif
4000bdbc534SSatish Balay 
4010bdbc534SSatish Balay   PetscFunctionBegin;
40271fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
4030bdbc534SSatish Balay   for (i=0; i<m; i++) {
4042515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
405e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
406e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4070bdbc534SSatish Balay #endif
4080bdbc534SSatish Balay       row = im[i];
409c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4100bdbc534SSatish Balay       for (j=0; j<n; j++) {
4110bdbc534SSatish Balay         col = in[j];
412db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
413db4deed7SKarl Rupp         else             value = v[i+j*m];
414b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
415c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
416c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4170bdbc534SSatish Balay 
418c2760754SSatish Balay 
419c2760754SSatish Balay         idx = h1;
4202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
421187ce0cbSSatish Balay         insert_ct++;
422187ce0cbSSatish Balay         total_ct++;
423187ce0cbSSatish Balay         if (HT[idx] != key) {
424187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
425187ce0cbSSatish Balay           if (idx == size) {
426187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
427f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
428187ce0cbSSatish Balay           }
429187ce0cbSSatish Balay         }
430187ce0cbSSatish Balay #else
431c2760754SSatish Balay         if (HT[idx] != key) {
432c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
433c2760754SSatish Balay           if (idx == size) {
434c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
435f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
436c2760754SSatish Balay           }
437c2760754SSatish Balay         }
438187ce0cbSSatish Balay #endif
439c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
440c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
441c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4420bdbc534SSatish Balay       }
4430bdbc534SSatish Balay     } else {
4440bdbc534SSatish Balay       if (!baij->donotstash) {
445ff2fd236SBarry Smith         if (roworiented) {
446b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
447ff2fd236SBarry Smith         } else {
448b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4490bdbc534SSatish Balay         }
4500bdbc534SSatish Balay       }
4510bdbc534SSatish Balay     }
4520bdbc534SSatish Balay   }
4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
454187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
455187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
456187ce0cbSSatish Balay #endif
4570bdbc534SSatish Balay   PetscFunctionReturn(0);
4580bdbc534SSatish Balay }
4590bdbc534SSatish Balay 
4604a2ae208SSatish Balay #undef __FUNCT__
46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4630bdbc534SSatish Balay {
4640bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
465ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
466dfbe8321SBarry Smith   PetscErrorCode    ierr;
467b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
468899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
469d0f46423SBarry Smith   PetscInt          rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
470b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
471329f5518SBarry Smith   PetscReal         tmp;
4723eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
473dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
475b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4764a15367fSSatish Balay #endif
4770bdbc534SSatish Balay 
478d0a41580SSatish Balay   PetscFunctionBegin;
4790bdbc534SSatish Balay   if (roworiented) {
4800bdbc534SSatish Balay     stepval = (n-1)*bs;
4810bdbc534SSatish Balay   } else {
4820bdbc534SSatish Balay     stepval = (m-1)*bs;
4830bdbc534SSatish Balay   }
4840bdbc534SSatish Balay   for (i=0; i<m; i++) {
4852515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
486e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
487e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4880bdbc534SSatish Balay #endif
4890bdbc534SSatish Balay     row   = im[i];
490ab715e2cSSatish Balay     v_t   = v + i*nbs2;
491c2760754SSatish Balay     if (row >= rstart && row < rend) {
4920bdbc534SSatish Balay       for (j=0; j<n; j++) {
4930bdbc534SSatish Balay         col = in[j];
4940bdbc534SSatish Balay 
4950bdbc534SSatish Balay         /* Look up into the Hash Table */
496c2760754SSatish Balay         key = row*Nbs+col+1;
497c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4980bdbc534SSatish Balay 
499c2760754SSatish Balay         idx = h1;
5002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
501187ce0cbSSatish Balay         total_ct++;
502187ce0cbSSatish Balay         insert_ct++;
503187ce0cbSSatish Balay        if (HT[idx] != key) {
504187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
505187ce0cbSSatish Balay           if (idx == size) {
506187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
507f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
508187ce0cbSSatish Balay           }
509187ce0cbSSatish Balay         }
510187ce0cbSSatish Balay #else
511c2760754SSatish Balay         if (HT[idx] != key) {
512c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
513c2760754SSatish Balay           if (idx == size) {
514c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
515f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
516c2760754SSatish Balay           }
517c2760754SSatish Balay         }
518187ce0cbSSatish Balay #endif
519c2760754SSatish Balay         baij_a = HD[idx];
5200bdbc534SSatish Balay         if (roworiented) {
521c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
522187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
523187ce0cbSSatish Balay           value = v_t;
524187ce0cbSSatish Balay           v_t  += bs;
525fef45726SSatish Balay           if (addv == ADD_VALUES) {
526c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
527c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
528fef45726SSatish Balay                 baij_a[jj]  += *value++;
529b4cc0f5aSSatish Balay               }
530b4cc0f5aSSatish Balay             }
531fef45726SSatish Balay           } else {
532c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
533c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
534fef45726SSatish Balay                 baij_a[jj]  = *value++;
535fef45726SSatish Balay               }
536fef45726SSatish Balay             }
537fef45726SSatish Balay           }
5380bdbc534SSatish Balay         } else {
5390bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
540fef45726SSatish Balay           if (addv == ADD_VALUES) {
541b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5420bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
543fef45726SSatish Balay                 baij_a[jj]  += *value++;
544fef45726SSatish Balay               }
545fef45726SSatish Balay             }
546fef45726SSatish Balay           } else {
547fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
548fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
549fef45726SSatish Balay                 baij_a[jj]  = *value++;
550fef45726SSatish Balay               }
551b4cc0f5aSSatish Balay             }
5520bdbc534SSatish Balay           }
5530bdbc534SSatish Balay         }
5540bdbc534SSatish Balay       }
5550bdbc534SSatish Balay     } else {
5560bdbc534SSatish Balay       if (!baij->donotstash) {
5570bdbc534SSatish Balay         if (roworiented) {
5588798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5590bdbc534SSatish Balay         } else {
5608798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5610bdbc534SSatish Balay         }
5620bdbc534SSatish Balay       }
5630bdbc534SSatish Balay     }
5640bdbc534SSatish Balay   }
5652515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
566187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
567187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
568187ce0cbSSatish Balay #endif
5690bdbc534SSatish Balay   PetscFunctionReturn(0);
5700bdbc534SSatish Balay }
571133cdb44SSatish Balay 
5724a2ae208SSatish Balay #undef __FUNCT__
5734a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
574b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
575d6de1c52SSatish Balay {
576d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5776849ba73SBarry Smith   PetscErrorCode ierr;
578d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
579d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
580d6de1c52SSatish Balay 
581133cdb44SSatish Balay   PetscFunctionBegin;
582d6de1c52SSatish Balay   for (i=0; i<m; i++) {
583e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
584e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
585d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
586d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
587d6de1c52SSatish Balay       for (j=0; j<n; j++) {
588e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
589e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
590d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
591d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59298dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
593d64ed03dSBarry Smith         } else {
594905e6a2fSBarry Smith           if (!baij->colmap) {
595ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
596905e6a2fSBarry Smith           }
597aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
5980f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
599fa46199cSSatish Balay           data --;
60048e59246SSatish Balay #else
60148e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60248e59246SSatish Balay #endif
60348e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
604d9d09a02SSatish Balay           else {
60548e59246SSatish Balay             col  = data + idxn[j]%bs;
60698dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
607d6de1c52SSatish Balay           }
608d6de1c52SSatish Balay         }
609d6de1c52SSatish Balay       }
610f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
611d6de1c52SSatish Balay   }
6123a40ed3dSBarry Smith  PetscFunctionReturn(0);
613d6de1c52SSatish Balay }
614d6de1c52SSatish Balay 
6154a2ae208SSatish Balay #undef __FUNCT__
6164a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
617dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
618d6de1c52SSatish Balay {
619d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
620d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
621dfbe8321SBarry Smith   PetscErrorCode ierr;
622d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
623329f5518SBarry Smith   PetscReal      sum = 0.0;
6243eda8832SBarry Smith   MatScalar      *v;
625d6de1c52SSatish Balay 
626d64ed03dSBarry Smith   PetscFunctionBegin;
627d6de1c52SSatish Balay   if (baij->size == 1) {
628064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
629d6de1c52SSatish Balay   } else {
630d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
631d6de1c52SSatish Balay       v = amat->a;
6328a62d963SHong Zhang       nz = amat->nz*bs2;
6338a62d963SHong Zhang       for (i=0; i<nz; i++) {
634329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
635d6de1c52SSatish Balay       }
636d6de1c52SSatish Balay       v = bmat->a;
6378a62d963SHong Zhang       nz = bmat->nz*bs2;
6388a62d963SHong Zhang       for (i=0; i<nz; i++) {
639329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
640d6de1c52SSatish Balay       }
641d9822059SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6428f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6438a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6448a62d963SHong Zhang       PetscReal *tmp,*tmp2;
645899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
646fca92195SBarry Smith       ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr);
647d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6488a62d963SHong Zhang       v = amat->a; jj = amat->j;
6498a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6508a62d963SHong Zhang         for (j=0; j<bs; j++) {
6518a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6528a62d963SHong Zhang           for (row=0; row<bs; row++) {
6538a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6548a62d963SHong Zhang           }
6558a62d963SHong Zhang         }
6568a62d963SHong Zhang         jj++;
6578a62d963SHong Zhang       }
6588a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6598a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6608a62d963SHong Zhang         for (j=0; j<bs; j++) {
6618a62d963SHong Zhang           col = bs*garray[*jj] + j;
6628a62d963SHong Zhang           for (row=0; row<bs; row++) {
6638a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6648a62d963SHong Zhang           }
6658a62d963SHong Zhang         }
6668a62d963SHong Zhang         jj++;
6678a62d963SHong Zhang       }
668d9822059SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6698a62d963SHong Zhang       *nrm = 0.0;
670d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6718a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6728a62d963SHong Zhang       }
673fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
6748a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
675577dd1f9SKris Buschelman       PetscReal *sums;
676cb9801acSJed Brown       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr);
6778a62d963SHong Zhang       sum = 0.0;
6788a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6798a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6808a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6818a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6828a62d963SHong Zhang         for (i=0; i<nz; i++) {
6838a62d963SHong Zhang           for (col=0; col<bs; col++) {
6848a62d963SHong Zhang             for (row=0; row<bs; row++) {
6858a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6868a62d963SHong Zhang             }
6878a62d963SHong Zhang           }
6888a62d963SHong Zhang         }
6898a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
6908a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
6918a62d963SHong Zhang         for (i=0; i<nz; i++) {
6928a62d963SHong Zhang           for (col=0; col<bs; col++) {
6938a62d963SHong Zhang             for (row=0; row<bs; row++) {
6948a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6958a62d963SHong Zhang             }
6968a62d963SHong Zhang           }
6978a62d963SHong Zhang         }
6988a62d963SHong Zhang         for (row=0; row<bs; row++) {
6998a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7008a62d963SHong Zhang         }
7018a62d963SHong Zhang       }
702d9822059SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
703577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
704e7e72b3dSBarry Smith     } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet");
705d64ed03dSBarry Smith   }
7063a40ed3dSBarry Smith   PetscFunctionReturn(0);
707d6de1c52SSatish Balay }
70857b952d6SSatish Balay 
709fef45726SSatish Balay /*
710fef45726SSatish Balay   Creates the hash table, and sets the table
711fef45726SSatish Balay   This table is created only once.
712fef45726SSatish Balay   If new entried need to be added to the matrix
713fef45726SSatish Balay   then the hash table has to be destroyed and
714fef45726SSatish Balay   recreated.
715fef45726SSatish Balay */
7164a2ae208SSatish Balay #undef __FUNCT__
7174a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
718dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
719596b8d2eSBarry Smith {
720596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
721596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
722596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
723b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7246849ba73SBarry Smith   PetscErrorCode ierr;
725fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
726899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
727b24ad042SBarry Smith   PetscInt       *HT,key;
7283eda8832SBarry Smith   MatScalar      **HD;
729329f5518SBarry Smith   PetscReal      tmp;
7306cf91177SBarry Smith #if defined(PETSC_USE_INFO)
731b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7324a15367fSSatish Balay #endif
733fef45726SSatish Balay 
734d64ed03dSBarry Smith   PetscFunctionBegin;
735fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
736fef45726SSatish Balay 
737fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
738fca92195SBarry Smith   ht_size       = baij->ht_size;
7390bdbc534SSatish Balay 
740fef45726SSatish Balay   /* Allocate Memory for Hash Table */
741fca92195SBarry Smith   ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr);
742fca92195SBarry Smith   ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr);
743fca92195SBarry Smith   ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr);
744b9e4cc15SSatish Balay   HD   = baij->hd;
745a07cd24cSSatish Balay   HT   = baij->ht;
746b9e4cc15SSatish Balay 
747596b8d2eSBarry Smith   /* Loop Over A */
7480bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
749596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7500bdbc534SSatish Balay       row = i+rstart;
7510bdbc534SSatish Balay       col = aj[j]+cstart;
752596b8d2eSBarry Smith 
753187ce0cbSSatish Balay       key = row*Nbs + col + 1;
754fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
755fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
756fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
757fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
758fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
759596b8d2eSBarry Smith           break;
7606cf91177SBarry Smith #if defined(PETSC_USE_INFO)
761187ce0cbSSatish Balay         } else {
762187ce0cbSSatish Balay           ct++;
763187ce0cbSSatish Balay #endif
764596b8d2eSBarry Smith         }
765187ce0cbSSatish Balay       }
7666cf91177SBarry Smith #if defined(PETSC_USE_INFO)
767187ce0cbSSatish Balay       if (k> max) max = k;
768187ce0cbSSatish Balay #endif
769596b8d2eSBarry Smith     }
770596b8d2eSBarry Smith   }
771596b8d2eSBarry Smith   /* Loop Over B */
7720bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
773596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7740bdbc534SSatish Balay       row = i+rstart;
7750bdbc534SSatish Balay       col = garray[bj[j]];
776187ce0cbSSatish Balay       key = row*Nbs + col + 1;
777fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
778fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
779fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
780fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
781fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
782596b8d2eSBarry Smith           break;
7836cf91177SBarry Smith #if defined(PETSC_USE_INFO)
784187ce0cbSSatish Balay         } else {
785187ce0cbSSatish Balay           ct++;
786187ce0cbSSatish Balay #endif
787596b8d2eSBarry Smith         }
788187ce0cbSSatish Balay       }
7896cf91177SBarry Smith #if defined(PETSC_USE_INFO)
790187ce0cbSSatish Balay       if (k> max) max = k;
791187ce0cbSSatish Balay #endif
792596b8d2eSBarry Smith     }
793596b8d2eSBarry Smith   }
794596b8d2eSBarry Smith 
795596b8d2eSBarry Smith   /* Print Summary */
7966cf91177SBarry Smith #if defined(PETSC_USE_INFO)
797fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
798596b8d2eSBarry Smith     if (HT[i]) {j++;}
799c38d4ed2SBarry Smith   }
8001e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
801187ce0cbSSatish Balay #endif
8023a40ed3dSBarry Smith   PetscFunctionReturn(0);
803596b8d2eSBarry Smith }
80457b952d6SSatish Balay 
8054a2ae208SSatish Balay #undef __FUNCT__
8064a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
807dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
808bbb85fb3SSatish Balay {
809bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
810dfbe8321SBarry Smith   PetscErrorCode ierr;
811b24ad042SBarry Smith   PetscInt       nstash,reallocs;
812bbb85fb3SSatish Balay   InsertMode     addv;
813bbb85fb3SSatish Balay 
814bbb85fb3SSatish Balay   PetscFunctionBegin;
8154cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
816bbb85fb3SSatish Balay     PetscFunctionReturn(0);
817bbb85fb3SSatish Balay   }
818bbb85fb3SSatish Balay 
819bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8208ad47952SJed Brown   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
821e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
822bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
823bbb85fb3SSatish Balay 
824d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8251e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8268798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8271e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
82846680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8291e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
830bbb85fb3SSatish Balay   PetscFunctionReturn(0);
831bbb85fb3SSatish Balay }
832bbb85fb3SSatish Balay 
8334a2ae208SSatish Balay #undef __FUNCT__
8344a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
835dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
836bbb85fb3SSatish Balay {
837bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
83891c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8396849ba73SBarry Smith   PetscErrorCode ierr;
840b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
841e44c0bd4SBarry Smith   PetscInt       *row,*col;
842ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8433eda8832SBarry Smith   MatScalar      *val;
844bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
845b24ad042SBarry Smith   PetscMPIInt    n;
846bbb85fb3SSatish Balay 
84791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
848bbb85fb3SSatish Balay   PetscFunctionBegin;
8494cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
850a2d1c673SSatish Balay     while (1) {
8518798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
852a2d1c673SSatish Balay       if (!flg) break;
853a2d1c673SSatish Balay 
854bbb85fb3SSatish Balay       for (i=0; i<n;) {
855bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
856bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
857bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
858bbb85fb3SSatish Balay         else       ncols = n-i;
859bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
86097e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
861bbb85fb3SSatish Balay         i = j;
862bbb85fb3SSatish Balay       }
863bbb85fb3SSatish Balay     }
8648798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
865a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
866a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
867a2d1c673SSatish Balay        restore the original flags */
868a2d1c673SSatish Balay     r1 = baij->roworiented;
869a2d1c673SSatish Balay     r2 = a->roworiented;
87091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8717c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8727c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
87391c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
874a2d1c673SSatish Balay     while (1) {
8758798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
876a2d1c673SSatish Balay       if (!flg) break;
877a2d1c673SSatish Balay 
878a2d1c673SSatish Balay       for (i=0; i<n;) {
879a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
880a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
881a2d1c673SSatish Balay         if (j < n) ncols = j-i;
882a2d1c673SSatish Balay         else       ncols = n-i;
88397e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
884a2d1c673SSatish Balay         i = j;
885a2d1c673SSatish Balay       }
886a2d1c673SSatish Balay     }
8878798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
888a2d1c673SSatish Balay     baij->roworiented = r1;
889a2d1c673SSatish Balay     a->roworiented    = r2;
89091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
891bbb85fb3SSatish Balay   }
892bbb85fb3SSatish Balay 
893bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
894bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
895bbb85fb3SSatish Balay 
896bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
897bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
898bbb85fb3SSatish Balay   /*
899bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
900bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
901bbb85fb3SSatish Balay   */
902bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
903c3aae356SJed Brown     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
904bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
905ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
906bbb85fb3SSatish Balay     }
907bbb85fb3SSatish Balay   }
908bbb85fb3SSatish Balay 
909bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
910bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
911bbb85fb3SSatish Balay   }
9124e35b6f3SSatish Balay   ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_FALSE);CHKERRQ(ierr);
913bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
914bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
915bbb85fb3SSatish Balay 
9166cf91177SBarry Smith #if defined(PETSC_USE_INFO)
917bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9181e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
919bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
920bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
921bbb85fb3SSatish Balay   }
922bbb85fb3SSatish Balay #endif
923bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
924bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
925bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
926bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
927bbb85fb3SSatish Balay   }
928bbb85fb3SSatish Balay 
929fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
930606d414cSSatish Balay   baij->rowvalues = 0;
931bbb85fb3SSatish Balay   PetscFunctionReturn(0);
932bbb85fb3SSatish Balay }
93357b952d6SSatish Balay 
9344a2ae208SSatish Balay #undef __FUNCT__
9354a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9366849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
93757b952d6SSatish Balay {
93857b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
939dfbe8321SBarry Smith   PetscErrorCode    ierr;
940b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
941d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
942ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
943b0a32e0cSBarry Smith   PetscViewer       sviewer;
944f3ef73ceSBarry Smith   PetscViewerFormat format;
94557b952d6SSatish Balay 
946d64ed03dSBarry Smith   PetscFunctionBegin;
947251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
948251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
94932077d6dSBarry Smith   if (iascii) {
950b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
951456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9524e220ebcSLois Curfman McInnes       MatInfo info;
9537adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
954d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
9557b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
95677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
95716608c43SJed Brown              rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
958d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
959e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
960d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
961e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
962b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9637b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
96407d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
96557b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9663a40ed3dSBarry Smith       PetscFunctionReturn(0);
967fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
96877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9693a40ed3dSBarry Smith       PetscFunctionReturn(0);
97004929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
97104929863SHong Zhang       PetscFunctionReturn(0);
97257b952d6SSatish Balay     }
97357b952d6SSatish Balay   }
97457b952d6SSatish Balay 
9750f5bd95cSBarry Smith   if (isdraw) {
976b0a32e0cSBarry Smith     PetscDraw       draw;
977ace3abfcSBarry Smith     PetscBool  isnull;
978b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
979b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
98057b952d6SSatish Balay   }
98157b952d6SSatish Balay 
98257b952d6SSatish Balay   if (size == 1) {
9837adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
98457b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
985d64ed03dSBarry Smith   } else {
98657b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
98757b952d6SSatish Balay     Mat         A;
98857b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
989d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
9903eda8832SBarry Smith     MatScalar   *a;
99157b952d6SSatish Balay 
992f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
993f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
9947adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
99557b952d6SSatish Balay     if (!rank) {
996f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
997d64ed03dSBarry Smith     } else {
998f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
99957b952d6SSatish Balay     }
1000f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1001d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
10022b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
100352e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
100457b952d6SSatish Balay 
100557b952d6SSatish Balay     /* copy over the A part */
100657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
100757b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1008b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
100957b952d6SSatish Balay 
101057b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1011899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
101257b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
101357b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1014899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
101557b952d6SSatish Balay         for (k=0; k<bs; k++) {
101697e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1017cee3aa6bSSatish Balay           col++; a += bs;
101857b952d6SSatish Balay         }
101957b952d6SSatish Balay       }
102057b952d6SSatish Balay     }
102157b952d6SSatish Balay     /* copy over the B part */
102257b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
102357b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
102457b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1025899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
102657b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
102757b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
102857b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
102957b952d6SSatish Balay         for (k=0; k<bs; k++) {
103097e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1031cee3aa6bSSatish Balay           col++; a += bs;
103257b952d6SSatish Balay         }
103357b952d6SSatish Balay       }
103457b952d6SSatish Balay     }
1035606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10366d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10376d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
103855843e3eSBarry Smith     /*
103955843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1040b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
104155843e3eSBarry Smith     */
1042b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1043f14a1c24SBarry Smith     if (!rank) {
10447adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10457566de4bSShri Abhyankar     /* Set the type name to MATMPIBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqBAIJ_ASCII()*/
10467566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPIBAIJ*)(A->data))->A)->type_name,MATMPIBAIJ);
10476831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
104857b952d6SSatish Balay     }
1049b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
10506bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
105157b952d6SSatish Balay   }
10523a40ed3dSBarry Smith   PetscFunctionReturn(0);
105357b952d6SSatish Balay }
105457b952d6SSatish Balay 
10554a2ae208SSatish Balay #undef __FUNCT__
1056660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary"
1057660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1058660746e0SBarry Smith {
1059660746e0SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)mat->data;
1060660746e0SBarry Smith   Mat_SeqBAIJ*   A = (Mat_SeqBAIJ*)a->A->data;
1061660746e0SBarry Smith   Mat_SeqBAIJ*   B = (Mat_SeqBAIJ*)a->B->data;
1062660746e0SBarry Smith   PetscErrorCode ierr;
10635f48b12bSBarry Smith   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
1064e96a6426SSatish Balay   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
1065660746e0SBarry Smith   int            fd;
1066660746e0SBarry Smith   PetscScalar    *column_values;
1067660746e0SBarry Smith   FILE           *file;
1068660746e0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
1069638eb2ebSBarry Smith   PetscInt       message_count,flowcontrolcount;
1070660746e0SBarry Smith 
1071660746e0SBarry Smith   PetscFunctionBegin;
1072660746e0SBarry Smith   ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
1073660746e0SBarry Smith   ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
1074660746e0SBarry Smith   nz   = bs2*(A->nz + B->nz);
1075660746e0SBarry Smith   rlen = mat->rmap->n;
1076660746e0SBarry Smith   if (!rank) {
1077660746e0SBarry Smith     header[0] = MAT_FILE_CLASSID;
1078660746e0SBarry Smith     header[1] = mat->rmap->N;
1079660746e0SBarry Smith     header[2] = mat->cmap->N;
1080660746e0SBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,((PetscObject)mat)->comm);CHKERRQ(ierr);
1081660746e0SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1082660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1083660746e0SBarry Smith     /* get largest number of rows any processor has */
1084660746e0SBarry Smith     range = mat->rmap->range;
1085660746e0SBarry Smith     for (i=1; i<size; i++) {
1086660746e0SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
1087660746e0SBarry Smith     }
1088660746e0SBarry Smith   } else {
1089660746e0SBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,((PetscObject)mat)->comm);CHKERRQ(ierr);
1090660746e0SBarry Smith   }
1091660746e0SBarry Smith 
1092660746e0SBarry Smith   ierr  = PetscMalloc((rlen/bs)*sizeof(PetscInt),&crow_lens);CHKERRQ(ierr);
1093660746e0SBarry Smith   /* compute lengths of each row  */
1094660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1095660746e0SBarry Smith     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1096660746e0SBarry Smith   }
1097660746e0SBarry Smith   /* store the row lengths to the file */
1098638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1099660746e0SBarry Smith   if (!rank) {
1100660746e0SBarry Smith     MPI_Status status;
1101660746e0SBarry Smith     ierr  = PetscMalloc(rlen*sizeof(PetscInt),&row_lens);CHKERRQ(ierr);
1102660746e0SBarry Smith     rlen  = (range[1] - range[0])/bs;
1103660746e0SBarry Smith     for (i=0; i<rlen; i++) {
1104660746e0SBarry Smith       for (j=0; j<bs; j++) {
1105660746e0SBarry Smith         row_lens[i*bs+j] = bs*crow_lens[i];
1106660746e0SBarry Smith       }
1107660746e0SBarry Smith     }
1108660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1109660746e0SBarry Smith     for (i=1; i<size; i++) {
1110660746e0SBarry Smith       rlen = (range[i+1] - range[i])/bs;
1111639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1112660746e0SBarry Smith       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
1113660746e0SBarry Smith       for (k=0; k<rlen; k++) {
1114660746e0SBarry Smith         for (j=0; j<bs; j++) {
1115660746e0SBarry Smith           row_lens[k*bs+j] = bs*crow_lens[k];
1116660746e0SBarry Smith         }
1117660746e0SBarry Smith       }
1118660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1119660746e0SBarry Smith     }
1120639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1121660746e0SBarry Smith     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1122660746e0SBarry Smith   } else {
1123639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1124660746e0SBarry Smith     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
1125639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1126660746e0SBarry Smith   }
1127660746e0SBarry Smith   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1128660746e0SBarry Smith 
1129660746e0SBarry Smith   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1130660746e0SBarry Smith      information needed to make it for each row from a block row. This does require more communication but still not more than
1131660746e0SBarry Smith      the communication needed for the nonzero values  */
1132660746e0SBarry Smith   nzmax = nz; /*  space a largest processor needs */
1133660746e0SBarry Smith   ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,((PetscObject)mat)->comm);CHKERRQ(ierr);
1134660746e0SBarry Smith   ierr = PetscMalloc(nzmax*sizeof(PetscInt),&column_indices);CHKERRQ(ierr);
1135660746e0SBarry Smith   cnt  = 0;
1136660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1137660746e0SBarry Smith     pcnt = cnt;
1138660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1139660746e0SBarry Smith       if ((col = garray[B->j[j]]) > cstart) break;
1140660746e0SBarry Smith       for (l=0; l<bs; l++) {
1141660746e0SBarry Smith         column_indices[cnt++] = bs*col+l;
1142660746e0SBarry Smith       }
1143660746e0SBarry Smith     }
1144660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1145660746e0SBarry Smith       for (l=0; l<bs; l++) {
1146660746e0SBarry Smith         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1147660746e0SBarry Smith       }
1148660746e0SBarry Smith     }
1149660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1150660746e0SBarry Smith       for (l=0; l<bs; l++) {
1151660746e0SBarry Smith         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1152660746e0SBarry Smith       }
1153660746e0SBarry Smith     }
1154660746e0SBarry Smith     len = cnt - pcnt;
1155660746e0SBarry Smith     for (k=1; k<bs; k++) {
1156660746e0SBarry Smith       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1157660746e0SBarry Smith       cnt += len;
1158660746e0SBarry Smith     }
1159660746e0SBarry Smith   }
1160660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1161660746e0SBarry Smith 
1162660746e0SBarry Smith   /* store the columns to the file */
1163638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1164660746e0SBarry Smith   if (!rank) {
1165660746e0SBarry Smith     MPI_Status status;
1166660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1167660746e0SBarry Smith     for (i=1; i<size; i++) {
1168639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1169660746e0SBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
1170660746e0SBarry Smith       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
1171660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1172660746e0SBarry Smith     }
1173639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1174660746e0SBarry Smith   } else {
1175639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1176660746e0SBarry Smith     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
1177660746e0SBarry Smith     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
1178639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1179660746e0SBarry Smith   }
1180660746e0SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1181660746e0SBarry Smith 
1182660746e0SBarry Smith   /* load up the numerical values */
1183660746e0SBarry Smith   ierr = PetscMalloc(nzmax*sizeof(PetscScalar),&column_values);CHKERRQ(ierr);
1184660746e0SBarry Smith   cnt = 0;
1185660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1186660746e0SBarry Smith     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1187660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1188660746e0SBarry Smith       if (garray[B->j[j]] > cstart) break;
1189660746e0SBarry Smith       for (l=0; l<bs; l++) {
1190660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1191660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1192660746e0SBarry Smith         }
1193660746e0SBarry Smith       }
1194660746e0SBarry Smith       cnt += bs;
1195660746e0SBarry Smith     }
1196660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1197660746e0SBarry Smith       for (l=0; l<bs; l++) {
1198660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1199660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1200660746e0SBarry Smith         }
1201660746e0SBarry Smith       }
1202660746e0SBarry Smith       cnt += bs;
1203660746e0SBarry Smith     }
1204660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1205660746e0SBarry Smith       for (l=0; l<bs; l++) {
1206660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1207660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1208660746e0SBarry Smith         }
1209660746e0SBarry Smith       }
1210660746e0SBarry Smith       cnt += bs;
1211660746e0SBarry Smith     }
1212660746e0SBarry Smith     cnt += (bs-1)*rlen;
1213660746e0SBarry Smith   }
1214660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1215660746e0SBarry Smith 
1216660746e0SBarry Smith   /* store the column values to the file */
1217638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1218660746e0SBarry Smith   if (!rank) {
1219660746e0SBarry Smith     MPI_Status status;
1220660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1221660746e0SBarry Smith     for (i=1; i<size; i++) {
1222639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1223660746e0SBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
1224660746e0SBarry Smith       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
1225660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1226660746e0SBarry Smith     }
1227639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1228660746e0SBarry Smith   } else {
1229639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1230660746e0SBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
1231660746e0SBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
1232639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1233660746e0SBarry Smith   }
1234660746e0SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
1235660746e0SBarry Smith 
1236660746e0SBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1237660746e0SBarry Smith   if (file) {
1238660746e0SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1239660746e0SBarry Smith   }
1240660746e0SBarry Smith   PetscFunctionReturn(0);
1241660746e0SBarry Smith }
1242660746e0SBarry Smith 
1243660746e0SBarry Smith #undef __FUNCT__
12444a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1245dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
124657b952d6SSatish Balay {
1247dfbe8321SBarry Smith   PetscErrorCode ierr;
1248ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
124957b952d6SSatish Balay 
1250d64ed03dSBarry Smith   PetscFunctionBegin;
1251251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1252251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1253251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1254251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1255660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12567b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1257660746e0SBarry Smith   } else if (isbinary) {
1258660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
125957b952d6SSatish Balay   }
12603a40ed3dSBarry Smith   PetscFunctionReturn(0);
126157b952d6SSatish Balay }
126257b952d6SSatish Balay 
12634a2ae208SSatish Balay #undef __FUNCT__
12644a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1265dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
126679bdfe76SSatish Balay {
126779bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1268dfbe8321SBarry Smith   PetscErrorCode ierr;
126979bdfe76SSatish Balay 
1270d64ed03dSBarry Smith   PetscFunctionBegin;
1271aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1272d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
127379bdfe76SSatish Balay #endif
12748798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12758798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12766bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12776bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1278aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12796bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
128048e59246SSatish Balay #else
128105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
128248e59246SSatish Balay #endif
128305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12846bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12856bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1286fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
128705b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1288fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1289899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1290bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1291901853e0SKris Buschelman 
1292dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1293901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1294901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1295901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1296901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1297aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1298901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1299901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
1300ad5247fdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C","",PETSC_NULL);CHKERRQ(ierr);
1301c0cdd4a1SDahai Guo   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C","",PETSC_NULL);CHKERRQ(ierr);
13023a40ed3dSBarry Smith   PetscFunctionReturn(0);
130379bdfe76SSatish Balay }
130479bdfe76SSatish Balay 
13054a2ae208SSatish Balay #undef __FUNCT__
13064a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1307dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1308cee3aa6bSSatish Balay {
1309cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1310dfbe8321SBarry Smith   PetscErrorCode ierr;
1311b24ad042SBarry Smith   PetscInt       nt;
1312cee3aa6bSSatish Balay 
1313d64ed03dSBarry Smith   PetscFunctionBegin;
1314e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1315e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1316e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1317e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1318ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1319f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1320ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1321f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
13223a40ed3dSBarry Smith   PetscFunctionReturn(0);
1323cee3aa6bSSatish Balay }
1324cee3aa6bSSatish Balay 
13254a2ae208SSatish Balay #undef __FUNCT__
13264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1327dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1328cee3aa6bSSatish Balay {
1329cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1330dfbe8321SBarry Smith   PetscErrorCode ierr;
1331d64ed03dSBarry Smith 
1332d64ed03dSBarry Smith   PetscFunctionBegin;
1333ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1334f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1335ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1336f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
13373a40ed3dSBarry Smith   PetscFunctionReturn(0);
1338cee3aa6bSSatish Balay }
1339cee3aa6bSSatish Balay 
13404a2ae208SSatish Balay #undef __FUNCT__
13414a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1342dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1343cee3aa6bSSatish Balay {
1344cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1345dfbe8321SBarry Smith   PetscErrorCode ierr;
1346ace3abfcSBarry Smith   PetscBool      merged;
1347cee3aa6bSSatish Balay 
1348d64ed03dSBarry Smith   PetscFunctionBegin;
1349a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1350cee3aa6bSSatish Balay   /* do nondiagonal part */
13517c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1352a5ff213dSBarry Smith   if (!merged) {
1353cee3aa6bSSatish Balay     /* send it on its way */
1354ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1355cee3aa6bSSatish Balay     /* do local part */
13567c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1357cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1358a5ff213dSBarry Smith     /* inserted in yy until the next line */
1359ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1360a5ff213dSBarry Smith   } else {
1361a5ff213dSBarry Smith     /* do local part */
1362a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1363a5ff213dSBarry Smith     /* send it on its way */
1364ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1365a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1366ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1367a5ff213dSBarry Smith   }
13683a40ed3dSBarry Smith   PetscFunctionReturn(0);
1369cee3aa6bSSatish Balay }
1370cee3aa6bSSatish Balay 
13714a2ae208SSatish Balay #undef __FUNCT__
13724a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1373dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1374cee3aa6bSSatish Balay {
1375cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1376dfbe8321SBarry Smith   PetscErrorCode ierr;
1377cee3aa6bSSatish Balay 
1378d64ed03dSBarry Smith   PetscFunctionBegin;
1379cee3aa6bSSatish Balay   /* do nondiagonal part */
13807c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1381cee3aa6bSSatish Balay   /* send it on its way */
1382ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1383cee3aa6bSSatish Balay   /* do local part */
13847c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1385cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1386cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1387cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1388ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13893a40ed3dSBarry Smith   PetscFunctionReturn(0);
1390cee3aa6bSSatish Balay }
1391cee3aa6bSSatish Balay 
1392cee3aa6bSSatish Balay /*
1393cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1394cee3aa6bSSatish Balay    diagonal block
1395cee3aa6bSSatish Balay */
13964a2ae208SSatish Balay #undef __FUNCT__
13974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1398dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1399cee3aa6bSSatish Balay {
1400cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1401dfbe8321SBarry Smith   PetscErrorCode ierr;
1402d64ed03dSBarry Smith 
1403d64ed03dSBarry Smith   PetscFunctionBegin;
1404e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
14053a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
14063a40ed3dSBarry Smith   PetscFunctionReturn(0);
1407cee3aa6bSSatish Balay }
1408cee3aa6bSSatish Balay 
14094a2ae208SSatish Balay #undef __FUNCT__
14104a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1411f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1412cee3aa6bSSatish Balay {
1413cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1414dfbe8321SBarry Smith   PetscErrorCode ierr;
1415d64ed03dSBarry Smith 
1416d64ed03dSBarry Smith   PetscFunctionBegin;
1417f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1418f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
14193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1420cee3aa6bSSatish Balay }
1421026e39d0SSatish Balay 
14224a2ae208SSatish Balay #undef __FUNCT__
14234a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1424b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1425acdf5bf4SSatish Balay {
1426acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
142787828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
14286849ba73SBarry Smith   PetscErrorCode ierr;
1429d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1430d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1431899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1432acdf5bf4SSatish Balay 
1433d64ed03dSBarry Smith   PetscFunctionBegin;
1434e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1435e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1436acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1437acdf5bf4SSatish Balay 
1438acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1439acdf5bf4SSatish Balay     /*
1440acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1441acdf5bf4SSatish Balay     */
1442acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1443b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1444bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1445acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1446acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1447acdf5bf4SSatish Balay     }
1448fca92195SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1449acdf5bf4SSatish Balay   }
1450d9d09a02SSatish Balay   lrow = row - brstart;
1451acdf5bf4SSatish Balay 
1452acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1453acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1454acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1455f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1456f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1457acdf5bf4SSatish Balay   nztot = nzA + nzB;
1458acdf5bf4SSatish Balay 
1459acdf5bf4SSatish Balay   cmap  = mat->garray;
1460acdf5bf4SSatish Balay   if (v  || idx) {
1461acdf5bf4SSatish Balay     if (nztot) {
1462acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1463b24ad042SBarry Smith       PetscInt imark = -1;
1464acdf5bf4SSatish Balay       if (v) {
1465acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1466acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1467d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1468acdf5bf4SSatish Balay           else break;
1469acdf5bf4SSatish Balay         }
1470acdf5bf4SSatish Balay         imark = i;
1471acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1472acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1473acdf5bf4SSatish Balay       }
1474acdf5bf4SSatish Balay       if (idx) {
1475acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1476acdf5bf4SSatish Balay         if (imark > -1) {
1477acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1478bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1479acdf5bf4SSatish Balay           }
1480acdf5bf4SSatish Balay         } else {
1481acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1482d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1483d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1484acdf5bf4SSatish Balay             else break;
1485acdf5bf4SSatish Balay           }
1486acdf5bf4SSatish Balay           imark = i;
1487acdf5bf4SSatish Balay         }
1488d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1489d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1490acdf5bf4SSatish Balay       }
1491d64ed03dSBarry Smith     } else {
1492d212a18eSSatish Balay       if (idx) *idx = 0;
1493d212a18eSSatish Balay       if (v)   *v   = 0;
1494d212a18eSSatish Balay     }
1495acdf5bf4SSatish Balay   }
1496acdf5bf4SSatish Balay   *nz = nztot;
1497f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1498f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14993a40ed3dSBarry Smith   PetscFunctionReturn(0);
1500acdf5bf4SSatish Balay }
1501acdf5bf4SSatish Balay 
15024a2ae208SSatish Balay #undef __FUNCT__
15034a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1504b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1505acdf5bf4SSatish Balay {
1506acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1507d64ed03dSBarry Smith 
1508d64ed03dSBarry Smith   PetscFunctionBegin;
1509e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1510acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
15113a40ed3dSBarry Smith   PetscFunctionReturn(0);
1512acdf5bf4SSatish Balay }
1513acdf5bf4SSatish Balay 
15144a2ae208SSatish Balay #undef __FUNCT__
15154a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1516dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
151758667388SSatish Balay {
151858667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1519dfbe8321SBarry Smith   PetscErrorCode ierr;
1520d64ed03dSBarry Smith 
1521d64ed03dSBarry Smith   PetscFunctionBegin;
152258667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
152358667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
15243a40ed3dSBarry Smith   PetscFunctionReturn(0);
152558667388SSatish Balay }
15260ac07820SSatish Balay 
15274a2ae208SSatish Balay #undef __FUNCT__
15284a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1529dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
15300ac07820SSatish Balay {
15314e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
15324e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1533dfbe8321SBarry Smith   PetscErrorCode ierr;
1534329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
15350ac07820SSatish Balay 
1536d64ed03dSBarry Smith   PetscFunctionBegin;
1537d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
15384e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
15390e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1540de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
15414e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
15420e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1543de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
15440ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15454e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15464e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15474e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15484e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15494e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15500ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1551d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
15524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15570ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1558d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
15594e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15604e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15614e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15624e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15634e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1564f23aa3ddSBarry Smith   } else SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15654e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15664e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15674e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15683a40ed3dSBarry Smith   PetscFunctionReturn(0);
15690ac07820SSatish Balay }
15700ac07820SSatish Balay 
15714a2ae208SSatish Balay #undef __FUNCT__
15724a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1573ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool  flg)
157458667388SSatish Balay {
157558667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1576dfbe8321SBarry Smith   PetscErrorCode ierr;
157758667388SSatish Balay 
1578d64ed03dSBarry Smith   PetscFunctionBegin;
157912c028f9SKris Buschelman   switch (op) {
1580512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
158112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
158228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1583a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
158412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
15854e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15864e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
158712c028f9SKris Buschelman     break;
158812c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15894e0d8c25SBarry Smith     a->roworiented = flg;
15904e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15914e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
159212c028f9SKris Buschelman     break;
15934e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1594290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
159512c028f9SKris Buschelman     break;
159612c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15974e0d8c25SBarry Smith     a->donotstash = flg;
159812c028f9SKris Buschelman     break;
159912c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
16004e0d8c25SBarry Smith     a->ht_flag = flg;
160112c028f9SKris Buschelman     break;
160277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
160377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
16042188ac68SBarry Smith   case MAT_HERMITIAN:
16052188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
16064e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
160777e54ba9SKris Buschelman     break;
160812c028f9SKris Buschelman   default:
160965e19b50SBarry Smith     SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op);
1610d64ed03dSBarry Smith   }
16113a40ed3dSBarry Smith   PetscFunctionReturn(0);
161258667388SSatish Balay }
161358667388SSatish Balay 
16144a2ae208SSatish Balay #undef __FUNCT__
16156a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ"
1616fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
16170ac07820SSatish Balay {
16180ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16190ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16200ac07820SSatish Balay   Mat            B;
1621dfbe8321SBarry Smith   PetscErrorCode ierr;
1622d0f46423SBarry Smith   PetscInt       M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1623d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
16243eda8832SBarry Smith   MatScalar      *a;
16250ac07820SSatish Balay 
1626d64ed03dSBarry Smith   PetscFunctionBegin;
1627e7e72b3dSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1628fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
16297adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1630d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
16317adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
16322e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
16332e72b8d9SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,PETSC_NULL,PETSC_DECIDE,PETSC_NULL);CHKERRQ(ierr);
1634fc4dec0aSBarry Smith   } else {
1635fc4dec0aSBarry Smith     B = *matout;
1636fc4dec0aSBarry Smith   }
16370ac07820SSatish Balay 
16380ac07820SSatish Balay   /* copy over the A part */
16390ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16400ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1641b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
16420ac07820SSatish Balay 
16430ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1644899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16450ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16460ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1647899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16480ac07820SSatish Balay       for (k=0; k<bs; k++) {
164997e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16500ac07820SSatish Balay         col++; a += bs;
16510ac07820SSatish Balay       }
16520ac07820SSatish Balay     }
16530ac07820SSatish Balay   }
16540ac07820SSatish Balay   /* copy over the B part */
16550ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16560ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
16570ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1658899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16590ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16600ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16610ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16620ac07820SSatish Balay       for (k=0; k<bs; k++) {
166397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16640ac07820SSatish Balay         col++; a += bs;
16650ac07820SSatish Balay       }
16660ac07820SSatish Balay     }
16670ac07820SSatish Balay   }
1668606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16690ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16700ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16710ac07820SSatish Balay 
1672815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
16730ac07820SSatish Balay     *matout = B;
16740ac07820SSatish Balay   } else {
1675eb6b5d47SBarry Smith     ierr = MatHeaderMerge(A,B);CHKERRQ(ierr);
16760ac07820SSatish Balay   }
16773a40ed3dSBarry Smith   PetscFunctionReturn(0);
16780ac07820SSatish Balay }
16790e95ebc0SSatish Balay 
16804a2ae208SSatish Balay #undef __FUNCT__
16814a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1682dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16830e95ebc0SSatish Balay {
168436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
168536c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1686dfbe8321SBarry Smith   PetscErrorCode ierr;
1687b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16880e95ebc0SSatish Balay 
1689d64ed03dSBarry Smith   PetscFunctionBegin;
169036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
169136c4a09eSSatish Balay   if (rr) {
169236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1693e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
169436c4a09eSSatish Balay     /* Overlap communication with computation. */
1695ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
169636c4a09eSSatish Balay   }
16970e95ebc0SSatish Balay   if (ll) {
16980e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1699e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1700a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
17010e95ebc0SSatish Balay   }
170236c4a09eSSatish Balay   /* scale  the diagonal block */
170336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
170436c4a09eSSatish Balay 
170536c4a09eSSatish Balay   if (rr) {
170636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1707ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1708a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
170936c4a09eSSatish Balay   }
171036c4a09eSSatish Balay 
17113a40ed3dSBarry Smith   PetscFunctionReturn(0);
17120e95ebc0SSatish Balay }
17130e95ebc0SSatish Balay 
17144a2ae208SSatish Balay #undef __FUNCT__
17154a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
17162b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
17170ac07820SSatish Balay {
17180ac07820SSatish Balay   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
17196849ba73SBarry Smith   PetscErrorCode    ierr;
1720b24ad042SBarry Smith   PetscMPIInt       imdex,size = l->size,n,rank = l->rank;
1721d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
1722b24ad042SBarry Smith   PetscInt          *nprocs,j,idx,nsends,row;
1723b24ad042SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
17247adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1725d0f46423SBarry Smith   PetscInt          *lens,*lrows,*values,rstart_bs=A->rmap->rstart;
17267adad957SLisandro Dalcin   MPI_Comm          comm = ((PetscObject)A)->comm;
17270ac07820SSatish Balay   MPI_Request       *send_waits,*recv_waits;
17280ac07820SSatish Balay   MPI_Status        recv_status,*send_status;
172997b48c8fSBarry Smith   const PetscScalar *xx;
173097b48c8fSBarry Smith   PetscScalar       *bb;
17316543fbbaSBarry Smith #if defined(PETSC_DEBUG)
1732ace3abfcSBarry Smith   PetscBool         found = PETSC_FALSE;
17336543fbbaSBarry Smith #endif
17340ac07820SSatish Balay 
1735d64ed03dSBarry Smith   PetscFunctionBegin;
17360ac07820SSatish Balay   /*  first count number of contributors to each processor */
1737b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1738b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1739b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
17406543fbbaSBarry Smith   j = 0;
17410ac07820SSatish Balay   for (i=0; i<N; i++) {
17426543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
17436543fbbaSBarry Smith     lastidx = idx;
17446543fbbaSBarry Smith     for (; j<size; j++) {
1745357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
17466543fbbaSBarry Smith         nprocs[2*j]++;
17476543fbbaSBarry Smith         nprocs[2*j+1] = 1;
17486543fbbaSBarry Smith         owner[i] = j;
17496543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17506543fbbaSBarry Smith         found = PETSC_TRUE;
17516543fbbaSBarry Smith #endif
17526543fbbaSBarry Smith         break;
17530ac07820SSatish Balay       }
17540ac07820SSatish Balay     }
17556543fbbaSBarry Smith #if defined(PETSC_DEBUG)
1756e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
17576543fbbaSBarry Smith     found = PETSC_FALSE;
17586543fbbaSBarry Smith #endif
17590ac07820SSatish Balay   }
1760c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
17610ac07820SSatish Balay 
17627367270fSBarry Smith   if (A->nooffproczerorows) {
17637367270fSBarry Smith     if (nsends > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"You called MatSetOption(,MAT_NO_OFF_PROC_ZERO_ROWS,PETSC_TRUE) but set an off process zero row");
17647367270fSBarry Smith     nrecvs = nsends;
17657367270fSBarry Smith     nmax   = N;
17667367270fSBarry Smith   } else {
17670ac07820SSatish Balay     /* inform other processors of number of messages and max length*/
1768c1dc657dSBarry Smith     ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
17697367270fSBarry Smith   }
17700ac07820SSatish Balay 
17710ac07820SSatish Balay   /* post receives:   */
1772b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1773b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
17740ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1775b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
17760ac07820SSatish Balay   }
17770ac07820SSatish Balay 
17780ac07820SSatish Balay   /* do sends:
17790ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
17800ac07820SSatish Balay      the ith processor
17810ac07820SSatish Balay   */
1782b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1783b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1784b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
17850ac07820SSatish Balay   starts[0]  = 0;
1786c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17870ac07820SSatish Balay   for (i=0; i<N; i++) {
17880ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
17890ac07820SSatish Balay   }
17900ac07820SSatish Balay 
17910ac07820SSatish Balay   starts[0] = 0;
1792c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17930ac07820SSatish Balay   count = 0;
17940ac07820SSatish Balay   for (i=0; i<size; i++) {
1795c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1796b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
17970ac07820SSatish Balay     }
17980ac07820SSatish Balay   }
1799606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
18000ac07820SSatish Balay 
1801357c27ecSBarry Smith   base = owners[rank];
18020ac07820SSatish Balay 
18030ac07820SSatish Balay   /*  wait on receives */
1804fca92195SBarry Smith   ierr   = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr);
1805fca92195SBarry Smith   count  = nrecvs;
1806fca92195SBarry Smith   slen = 0;
18070ac07820SSatish Balay   while (count) {
1808ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
18090ac07820SSatish Balay     /* unpack receives into our local space */
1810b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
18110ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
18120ac07820SSatish Balay     lens[imdex]    = n;
18130ac07820SSatish Balay     slen          += n;
18140ac07820SSatish Balay     count--;
18150ac07820SSatish Balay   }
1816606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
18170ac07820SSatish Balay 
18180ac07820SSatish Balay   /* move the data into the send scatter */
1819b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
18200ac07820SSatish Balay   count = 0;
18210ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
18220ac07820SSatish Balay     values = rvalues + i*nmax;
18230ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
18240ac07820SSatish Balay       lrows[count++] = values[j] - base;
18250ac07820SSatish Balay     }
18260ac07820SSatish Balay   }
1827606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1828fca92195SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
1829606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1830606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
18310ac07820SSatish Balay 
183297b48c8fSBarry Smith   /* fix right hand side if needed */
183397b48c8fSBarry Smith   if (x && b) {
183497b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
183597b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
183697b48c8fSBarry Smith     for (i=0; i<slen; i++) {
183797b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
183897b48c8fSBarry Smith     }
183997b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
184097b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
184197b48c8fSBarry Smith   }
184297b48c8fSBarry Smith 
18430ac07820SSatish Balay   /* actually zap the local rows */
184472dacd9aSBarry Smith   /*
184572dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1846a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
184772dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
184872dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
184972dacd9aSBarry Smith 
185072dacd9aSBarry Smith   */
18519c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
18522b40b63fSBarry Smith   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0,0,0);CHKERRQ(ierr);
1853d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
18542b40b63fSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag,0,0);CHKERRQ(ierr);
1855f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
18562b40b63fSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
1857e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1858512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
1859a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1860a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1861f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1862a07cd24cSSatish Balay     }
1863a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1864a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18659c957beeSSatish Balay   } else {
18662b40b63fSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
1867a07cd24cSSatish Balay   }
18689c957beeSSatish Balay 
1869606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1870a07cd24cSSatish Balay 
18710ac07820SSatish Balay   /* wait on sends */
18720ac07820SSatish Balay   if (nsends) {
187382502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1874ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1875606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
18760ac07820SSatish Balay   }
1877606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1878606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
18790ac07820SSatish Balay 
18803a40ed3dSBarry Smith   PetscFunctionReturn(0);
18810ac07820SSatish Balay }
188272dacd9aSBarry Smith 
18834a2ae208SSatish Balay #undef __FUNCT__
18844a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1885dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1886bb5a7306SBarry Smith {
1887bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1888dfbe8321SBarry Smith   PetscErrorCode ierr;
1889d64ed03dSBarry Smith 
1890d64ed03dSBarry Smith   PetscFunctionBegin;
1891bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18923a40ed3dSBarry Smith   PetscFunctionReturn(0);
1893bb5a7306SBarry Smith }
1894bb5a7306SBarry Smith 
18956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
18960ac07820SSatish Balay 
18974a2ae208SSatish Balay #undef __FUNCT__
18984a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1899ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
19007fc3c18eSBarry Smith {
19017fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
19027fc3c18eSBarry Smith   Mat            a,b,c,d;
1903ace3abfcSBarry Smith   PetscBool      flg;
1904dfbe8321SBarry Smith   PetscErrorCode ierr;
19057fc3c18eSBarry Smith 
19067fc3c18eSBarry Smith   PetscFunctionBegin;
19077fc3c18eSBarry Smith   a = matA->A; b = matA->B;
19087fc3c18eSBarry Smith   c = matB->A; d = matB->B;
19097fc3c18eSBarry Smith 
19107fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1911abc0a331SBarry Smith   if (flg) {
19127fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
19137fc3c18eSBarry Smith   }
1914c3aae356SJed Brown   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
19157fc3c18eSBarry Smith   PetscFunctionReturn(0);
19167fc3c18eSBarry Smith }
19177fc3c18eSBarry Smith 
19183c896bc6SHong Zhang #undef __FUNCT__
19193c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
19203c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
19213c896bc6SHong Zhang {
19223c896bc6SHong Zhang   PetscErrorCode ierr;
19233c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
19243c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
19253c896bc6SHong Zhang 
19263c896bc6SHong Zhang   PetscFunctionBegin;
19273c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
19283c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
19293c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
19303c896bc6SHong Zhang   } else {
19313c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
19323c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
19333c896bc6SHong Zhang   }
19343c896bc6SHong Zhang   PetscFunctionReturn(0);
19353c896bc6SHong Zhang }
1936273d9f13SBarry Smith 
19374a2ae208SSatish Balay #undef __FUNCT__
19384994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ"
19394994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1940273d9f13SBarry Smith {
1941dfbe8321SBarry Smith   PetscErrorCode ierr;
1942273d9f13SBarry Smith 
1943273d9f13SBarry Smith   PetscFunctionBegin;
1944535b19f3SBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1945273d9f13SBarry Smith   PetscFunctionReturn(0);
1946273d9f13SBarry Smith }
1947273d9f13SBarry Smith 
19484fe895cdSHong Zhang #undef __FUNCT__
19494fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
19504fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19514fe895cdSHong Zhang {
19524fe895cdSHong Zhang   PetscErrorCode ierr;
19534fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
19544fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19554fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19564fe895cdSHong Zhang 
19574fe895cdSHong Zhang   PetscFunctionBegin;
19584fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19594fe895cdSHong Zhang     PetscScalar alpha = a;
19604fe895cdSHong Zhang     x    = (Mat_SeqBAIJ *)xx->A->data;
19614fe895cdSHong Zhang     y    = (Mat_SeqBAIJ *)yy->A->data;
1962*c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
19634fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19644fe895cdSHong Zhang     x    = (Mat_SeqBAIJ *)xx->B->data;
19654fe895cdSHong Zhang     y    = (Mat_SeqBAIJ *)yy->B->data;
1966*c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
19674fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19684fe895cdSHong Zhang   } else {
19694fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
19704fe895cdSHong Zhang   }
19714fe895cdSHong Zhang   PetscFunctionReturn(0);
19724fe895cdSHong Zhang }
19734fe895cdSHong Zhang 
197499cafbc1SBarry Smith #undef __FUNCT__
197599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
197699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
197799cafbc1SBarry Smith {
197899cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
197999cafbc1SBarry Smith   PetscErrorCode ierr;
198099cafbc1SBarry Smith 
198199cafbc1SBarry Smith   PetscFunctionBegin;
198299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
198399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
198499cafbc1SBarry Smith   PetscFunctionReturn(0);
198599cafbc1SBarry Smith }
198699cafbc1SBarry Smith 
198799cafbc1SBarry Smith #undef __FUNCT__
198899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
198999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
199099cafbc1SBarry Smith {
199199cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
199299cafbc1SBarry Smith   PetscErrorCode ierr;
199399cafbc1SBarry Smith 
199499cafbc1SBarry Smith   PetscFunctionBegin;
199599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
199699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
199799cafbc1SBarry Smith   PetscFunctionReturn(0);
199899cafbc1SBarry Smith }
199999cafbc1SBarry Smith 
200082094794SBarry Smith #undef __FUNCT__
200182094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
20024aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
20034aa3045dSJed Brown {
20044aa3045dSJed Brown   PetscErrorCode ierr;
20054aa3045dSJed Brown   IS             iscol_local;
20064aa3045dSJed Brown   PetscInt       csize;
20074aa3045dSJed Brown 
20084aa3045dSJed Brown   PetscFunctionBegin;
20094aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
2010b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
2011b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
2012e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
2013b79d0421SJed Brown   } else {
20144aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
2015b79d0421SJed Brown   }
20164aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
2017b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
2018b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
20196bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
2020b79d0421SJed Brown   }
20214aa3045dSJed Brown   PetscFunctionReturn(0);
20224aa3045dSJed Brown }
202329dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*);
20244aa3045dSJed Brown #undef __FUNCT__
2025dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private"
202682094794SBarry Smith /*
202782094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
202882094794SBarry Smith   in local and then by concatenating the local matrices the end result.
202982094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
203082094794SBarry Smith */
20314aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
203282094794SBarry Smith {
203382094794SBarry Smith   PetscErrorCode ierr;
203482094794SBarry Smith   PetscMPIInt    rank,size;
203582094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
203629dcf524SDmitry Karpeev   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow;
203729dcf524SDmitry Karpeev   Mat            M,Mreuse;
203882094794SBarry Smith   MatScalar      *vwork,*aa;
203982094794SBarry Smith   MPI_Comm       comm = ((PetscObject)mat)->comm;
204029dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
204129dcf524SDmitry Karpeev   PetscBool      idflag,allrows, allcols;
204282094794SBarry Smith   Mat_SeqBAIJ    *aij;
204382094794SBarry Smith 
204482094794SBarry Smith 
204582094794SBarry Smith   PetscFunctionBegin;
204682094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
204782094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
204829dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
204929dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
205029dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
205129dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
205282094794SBarry Smith 
205329dcf524SDmitry Karpeev   /* Check for special case: each processor gets entire matrix columns */
205429dcf524SDmitry Karpeev   ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr);
205529dcf524SDmitry Karpeev   ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr);
205629dcf524SDmitry Karpeev   if (idflag && ncol == mat->cmap->N) {
205729dcf524SDmitry Karpeev     allcols = PETSC_TRUE;
205829dcf524SDmitry Karpeev   } else {
205929dcf524SDmitry Karpeev     allcols = PETSC_FALSE;
206029dcf524SDmitry Karpeev   }
206129dcf524SDmitry Karpeev 
206229dcf524SDmitry Karpeev   ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr);
206329dcf524SDmitry Karpeev   ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr);
206429dcf524SDmitry Karpeev   if (idflag && nrow == mat->rmap->N) {
206529dcf524SDmitry Karpeev     allrows = PETSC_TRUE;
206629dcf524SDmitry Karpeev   } else {
206729dcf524SDmitry Karpeev     allrows = PETSC_FALSE;
206829dcf524SDmitry Karpeev   }
206982094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
207082094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
2071e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
207275f6568bSJed Brown     ierr  = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
207382094794SBarry Smith   } else {
207475f6568bSJed Brown     ierr   = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
207582094794SBarry Smith   }
207629dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
207729dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
207882094794SBarry Smith   /*
207982094794SBarry Smith       m - number of local rows
208082094794SBarry Smith       n - number of columns (same on all processors)
208182094794SBarry Smith       rstart - first row in new global matrix generated
208282094794SBarry Smith   */
208382094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
208482094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
208582094794SBarry Smith   m    = m/bs;
208682094794SBarry Smith   n    = n/bs;
208782094794SBarry Smith 
208882094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
208982094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
209082094794SBarry Smith     ii  = aij->i;
209182094794SBarry Smith     jj  = aij->j;
209282094794SBarry Smith 
209382094794SBarry Smith     /*
209482094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
209582094794SBarry Smith         portions of the matrix in order to do correct preallocation
209682094794SBarry Smith     */
209782094794SBarry Smith 
209882094794SBarry Smith     /* first get start and end of "diagonal" columns */
209982094794SBarry Smith     if (csize == PETSC_DECIDE) {
210082094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
210182094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
210282094794SBarry Smith         nlocal = m;
210382094794SBarry Smith       } else {
210482094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
210582094794SBarry Smith       }
210682094794SBarry Smith     } else {
210782094794SBarry Smith       nlocal = csize/bs;
210882094794SBarry Smith     }
210982094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
211082094794SBarry Smith     rstart = rend - nlocal;
211165e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
211282094794SBarry Smith 
211382094794SBarry Smith     /* next, compute all the lengths */
211482094794SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
211582094794SBarry Smith     olens = dlens + m;
211682094794SBarry Smith     for (i=0; i<m; i++) {
211782094794SBarry Smith       jend = ii[i+1] - ii[i];
211882094794SBarry Smith       olen = 0;
211982094794SBarry Smith       dlen = 0;
212082094794SBarry Smith       for (j=0; j<jend; j++) {
212182094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
212282094794SBarry Smith         else dlen++;
212382094794SBarry Smith         jj++;
212482094794SBarry Smith       }
212582094794SBarry Smith       olens[i] = olen;
212682094794SBarry Smith       dlens[i] = dlen;
212782094794SBarry Smith     }
212882094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
212982094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
213082094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
213182094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
213282094794SBarry Smith     ierr = PetscFree(dlens);CHKERRQ(ierr);
213382094794SBarry Smith   } else {
213482094794SBarry Smith     PetscInt ml,nl;
213582094794SBarry Smith 
213682094794SBarry Smith     M = *newmat;
213782094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2138e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
213982094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
214082094794SBarry Smith     /*
214182094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
214282094794SBarry Smith        rather than the slower MatSetValues().
214382094794SBarry Smith     */
214482094794SBarry Smith     M->was_assembled = PETSC_TRUE;
214582094794SBarry Smith     M->assembled     = PETSC_FALSE;
214682094794SBarry Smith   }
214782094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
214882094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
214982094794SBarry Smith   aij = (Mat_SeqBAIJ*)(Mreuse)->data;
215082094794SBarry Smith   ii  = aij->i;
215182094794SBarry Smith   jj  = aij->j;
215282094794SBarry Smith   aa  = aij->a;
215382094794SBarry Smith   for (i=0; i<m; i++) {
215482094794SBarry Smith     row   = rstart/bs + i;
215582094794SBarry Smith     nz    = ii[i+1] - ii[i];
215682094794SBarry Smith     cwork = jj;     jj += nz;
215775f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
215882094794SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
215982094794SBarry Smith   }
216082094794SBarry Smith 
216182094794SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
216282094794SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
216382094794SBarry Smith   *newmat = M;
216482094794SBarry Smith 
216582094794SBarry Smith   /* save submatrix used in processor for next request */
216682094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
216782094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
216882094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
216982094794SBarry Smith   }
217082094794SBarry Smith 
217182094794SBarry Smith   PetscFunctionReturn(0);
217282094794SBarry Smith }
217382094794SBarry Smith 
217482094794SBarry Smith #undef __FUNCT__
217582094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
217682094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
217782094794SBarry Smith {
217882094794SBarry Smith   MPI_Comm       comm,pcomm;
217975f6568bSJed Brown   PetscInt       first,rlocal_size,clocal_size,nrows;
218082094794SBarry Smith   const PetscInt *rows;
2181dbf0e21dSBarry Smith   PetscMPIInt    size;
218275f6568bSJed Brown   IS             crowp,growp,irowp,lrowp,lcolp;
218382094794SBarry Smith   PetscErrorCode ierr;
218482094794SBarry Smith 
218582094794SBarry Smith   PetscFunctionBegin;
218682094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
218782094794SBarry Smith   /* make a collective version of 'rowp' */
218882094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
218982094794SBarry Smith   if (pcomm==comm) {
219082094794SBarry Smith     crowp = rowp;
219182094794SBarry Smith   } else {
219282094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
219382094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
219470b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
219582094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
219682094794SBarry Smith   }
219782094794SBarry Smith   /* collect the global row permutation and invert it */
219882094794SBarry Smith   ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr);
219982094794SBarry Smith   ierr = ISSetPermutation(growp);CHKERRQ(ierr);
220082094794SBarry Smith   if (pcomm!=comm) {
22016bf464f9SBarry Smith     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
220282094794SBarry Smith   }
220382094794SBarry Smith   ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr);
220475f6568bSJed Brown   ierr = ISDestroy(&growp);CHKERRQ(ierr);
220582094794SBarry Smith   /* get the local target indices */
220682094794SBarry Smith   ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr);
220775f6568bSJed Brown   ierr = MatGetLocalSize(A,&rlocal_size,&clocal_size);CHKERRQ(ierr);
220882094794SBarry Smith   ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr);
220975f6568bSJed Brown   ierr = ISCreateGeneral(MPI_COMM_SELF,rlocal_size,rows+first,PETSC_COPY_VALUES,&lrowp);CHKERRQ(ierr);
221082094794SBarry Smith   ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr);
22116bf464f9SBarry Smith   ierr = ISDestroy(&irowp);CHKERRQ(ierr);
221282094794SBarry Smith   /* the column permutation is so much easier;
221382094794SBarry Smith      make a local version of 'colp' and invert it */
221482094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2215dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2216dbf0e21dSBarry Smith   if (size==1) {
221782094794SBarry Smith     lcolp = colp;
221882094794SBarry Smith   } else {
221975f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
222082094794SBarry Smith   }
2221dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
222275f6568bSJed Brown   /* now we just get the submatrix */
222375f6568bSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2224dbf0e21dSBarry Smith   if (size>1) {
22256bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
222682094794SBarry Smith   }
222782094794SBarry Smith   /* clean up */
22286bf464f9SBarry Smith   ierr = ISDestroy(&lrowp);CHKERRQ(ierr);
222982094794SBarry Smith   PetscFunctionReturn(0);
223082094794SBarry Smith }
223182094794SBarry Smith 
22328c7482ecSBarry Smith #undef __FUNCT__
22338c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
22347087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
22358c7482ecSBarry Smith {
22368c7482ecSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*) mat->data;
22378c7482ecSBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
22388c7482ecSBarry Smith 
22398c7482ecSBarry Smith   PetscFunctionBegin;
22408c7482ecSBarry Smith   if (nghosts) { *nghosts = B->nbs;}
22418c7482ecSBarry Smith   if (ghosts) {*ghosts = baij->garray;}
22428c7482ecSBarry Smith   PetscFunctionReturn(0);
22438c7482ecSBarry Smith }
22448c7482ecSBarry Smith 
2245ab9863d7SBarry Smith extern PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat);
2246f6d58c54SBarry Smith 
2247f6d58c54SBarry Smith #undef __FUNCT__
2248f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ"
2249f6d58c54SBarry Smith /*
2250f6d58c54SBarry Smith     This routine is almost identical to MatFDColoringCreate_MPIBAIJ()!
2251f6d58c54SBarry Smith */
2252f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c)
2253f6d58c54SBarry Smith {
2254f6d58c54SBarry Smith   Mat_MPIBAIJ            *baij = (Mat_MPIBAIJ*)mat->data;
2255f6d58c54SBarry Smith   PetscErrorCode        ierr;
2256f6d58c54SBarry Smith   PetscMPIInt           size,*ncolsonproc,*disp,nn;
22571a83f524SJed Brown   PetscInt              bs,i,n,nrows,j,k,m,ncols,col;
22581a83f524SJed Brown   const PetscInt        *is,*rows = 0,*A_ci,*A_cj,*B_ci,*B_cj;
22591a83f524SJed Brown   PetscInt              nis = iscoloring->n,nctot,*cols;
2260f6d58c54SBarry Smith   PetscInt              *rowhit,M,cstart,cend,colb;
2261f6d58c54SBarry Smith   PetscInt              *columnsforrow,l;
2262f6d58c54SBarry Smith   IS                    *isa;
2263ace3abfcSBarry Smith   PetscBool              done,flg;
2264992144d0SBarry Smith   ISLocalToGlobalMapping map = mat->cmap->bmapping;
2265f6d58c54SBarry Smith   PetscInt               *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype;
2266f6d58c54SBarry Smith 
2267f6d58c54SBarry Smith   PetscFunctionBegin;
2268e7e72b3dSBarry Smith   if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();");
2269e7e72b3dSBarry Smith   if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock");
2270f6d58c54SBarry Smith 
2271f6d58c54SBarry Smith   ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr);
2272f6d58c54SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
2273f6d58c54SBarry Smith   M                = mat->rmap->n/bs;
2274f6d58c54SBarry Smith   cstart           = mat->cmap->rstart/bs;
2275f6d58c54SBarry Smith   cend             = mat->cmap->rend/bs;
2276f6d58c54SBarry Smith   c->M             = mat->rmap->N/bs;  /* set the global rows and columns and local rows */
2277f6d58c54SBarry Smith   c->N             = mat->cmap->N/bs;
2278f6d58c54SBarry Smith   c->m             = mat->rmap->n/bs;
2279f6d58c54SBarry Smith   c->rstart        = mat->rmap->rstart/bs;
2280f6d58c54SBarry Smith 
2281f6d58c54SBarry Smith   c->ncolors       = nis;
2282f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr);
2283f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr);
2284f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr);
2285f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr);
2286f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr);
2287f6d58c54SBarry Smith   ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr);
2288f6d58c54SBarry Smith 
2289f6d58c54SBarry Smith   /* Allow access to data structures of local part of matrix */
2290f6d58c54SBarry Smith   if (!baij->colmap) {
2291ab9863d7SBarry Smith     ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
2292f6d58c54SBarry Smith   }
2293f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2294f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2295f6d58c54SBarry Smith 
2296f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr);
2297f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr);
2298f6d58c54SBarry Smith 
2299f6d58c54SBarry Smith   for (i=0; i<nis; i++) {
2300f6d58c54SBarry Smith     ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr);
2301f6d58c54SBarry Smith     ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr);
2302f6d58c54SBarry Smith     c->ncolumns[i] = n;
2303f6d58c54SBarry Smith     if (n) {
2304f6d58c54SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr);
2305f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr);
2306f6d58c54SBarry Smith       ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr);
2307f6d58c54SBarry Smith     } else {
2308f6d58c54SBarry Smith       c->columns[i]  = 0;
2309f6d58c54SBarry Smith     }
2310f6d58c54SBarry Smith 
2311f6d58c54SBarry Smith     if (ctype == IS_COLORING_GLOBAL) {
2312f6d58c54SBarry Smith       /* Determine the total (parallel) number of columns of this color */
2313f6d58c54SBarry Smith       ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
2314fca92195SBarry Smith       ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr);
2315f6d58c54SBarry Smith 
2316f6d58c54SBarry Smith       nn   = PetscMPIIntCast(n);
2317f6d58c54SBarry Smith       ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2318f6d58c54SBarry Smith       nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];}
2319f6d58c54SBarry Smith       if (!nctot) {
2320f6d58c54SBarry Smith         ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr);
2321f6d58c54SBarry Smith       }
2322f6d58c54SBarry Smith 
2323f6d58c54SBarry Smith       disp[0] = 0;
2324f6d58c54SBarry Smith       for (j=1; j<size; j++) {
2325f6d58c54SBarry Smith         disp[j] = disp[j-1] + ncolsonproc[j-1];
2326f6d58c54SBarry Smith       }
2327f6d58c54SBarry Smith 
2328f6d58c54SBarry Smith       /* Get complete list of columns for color on each processor */
2329f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2330f6d58c54SBarry Smith       ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2331fca92195SBarry Smith       ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr);
2332f6d58c54SBarry Smith     } else if (ctype == IS_COLORING_GHOSTED) {
2333f6d58c54SBarry Smith       /* Determine local number of columns of this color on this process, including ghost points */
2334f6d58c54SBarry Smith       nctot = n;
2335f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2336f6d58c54SBarry Smith       ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr);
2337f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type");
2338f6d58c54SBarry Smith 
2339f6d58c54SBarry Smith     /*
2340f6d58c54SBarry Smith        Mark all rows affect by these columns
2341f6d58c54SBarry Smith     */
2342f6d58c54SBarry Smith     /* Temporary option to allow for debugging/testing */
2343f6d58c54SBarry Smith     flg  = PETSC_FALSE;
2344acfcf0e5SJed Brown     ierr = PetscOptionsGetBool(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr);
2345f6d58c54SBarry Smith     if (!flg) {/*-----------------------------------------------------------------------------*/
2346f6d58c54SBarry Smith       /* crude, fast version */
2347f6d58c54SBarry Smith       ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr);
2348f6d58c54SBarry Smith       /* loop over columns*/
2349f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2350f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2351f6d58c54SBarry Smith           col = ltog[cols[j]];
2352f6d58c54SBarry Smith         } else {
2353f6d58c54SBarry Smith           col  = cols[j];
2354f6d58c54SBarry Smith         }
2355f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2356f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2357f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2358f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2359f6d58c54SBarry Smith         } else {
2360f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2361cb9801acSJed Brown           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2362f6d58c54SBarry Smith           colb --;
2363f6d58c54SBarry Smith #else
2364f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2365f6d58c54SBarry Smith #endif
2366f6d58c54SBarry Smith           if (colb == -1) {
2367f6d58c54SBarry Smith             m = 0;
2368f6d58c54SBarry Smith           } else {
2369f6d58c54SBarry Smith             colb = colb/bs;
2370f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2371f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2372f6d58c54SBarry Smith           }
2373f6d58c54SBarry Smith         }
2374f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2375f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2376f6d58c54SBarry Smith           rowhit[*rows++] = col + 1;
2377f6d58c54SBarry Smith         }
2378f6d58c54SBarry Smith       }
2379f6d58c54SBarry Smith 
2380f6d58c54SBarry Smith       /* count the number of hits */
2381f6d58c54SBarry Smith       nrows = 0;
2382f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2383f6d58c54SBarry Smith         if (rowhit[j]) nrows++;
2384f6d58c54SBarry Smith       }
2385f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2386f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2387f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2388f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2389f6d58c54SBarry Smith       nrows = 0;
2390f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2391f6d58c54SBarry Smith         if (rowhit[j]) {
2392f6d58c54SBarry Smith           c->rows[i][nrows]           = j;
2393f6d58c54SBarry Smith           c->columnsforrow[i][nrows] = rowhit[j] - 1;
2394f6d58c54SBarry Smith           nrows++;
2395f6d58c54SBarry Smith         }
2396f6d58c54SBarry Smith       }
2397f6d58c54SBarry Smith     } else {/*-------------------------------------------------------------------------------*/
2398f6d58c54SBarry Smith       /* slow version, using rowhit as a linked list */
2399f6d58c54SBarry Smith       PetscInt currentcol,fm,mfm;
2400f6d58c54SBarry Smith       rowhit[M] = M;
2401f6d58c54SBarry Smith       nrows     = 0;
2402f6d58c54SBarry Smith       /* loop over columns*/
2403f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2404f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2405f6d58c54SBarry Smith           col = ltog[cols[j]];
2406f6d58c54SBarry Smith         } else {
2407f6d58c54SBarry Smith           col  = cols[j];
2408f6d58c54SBarry Smith         }
2409f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2410f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2411f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2412f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2413f6d58c54SBarry Smith         } else {
2414f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2415f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2416f6d58c54SBarry Smith           colb --;
2417f6d58c54SBarry Smith #else
2418f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2419f6d58c54SBarry Smith #endif
2420f6d58c54SBarry Smith           if (colb == -1) {
2421f6d58c54SBarry Smith             m = 0;
2422f6d58c54SBarry Smith           } else {
2423f6d58c54SBarry Smith             colb = colb/bs;
2424f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2425f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2426f6d58c54SBarry Smith           }
2427f6d58c54SBarry Smith         }
2428f6d58c54SBarry Smith 
2429f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2430f6d58c54SBarry Smith         fm    = M; /* fm points to first entry in linked list */
2431f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2432f6d58c54SBarry Smith           currentcol = *rows++;
2433f6d58c54SBarry Smith           /* is it already in the list? */
2434f6d58c54SBarry Smith           do {
2435f6d58c54SBarry Smith             mfm  = fm;
2436f6d58c54SBarry Smith             fm   = rowhit[fm];
2437f6d58c54SBarry Smith           } while (fm < currentcol);
2438f6d58c54SBarry Smith           /* not in list so add it */
2439f6d58c54SBarry Smith           if (fm != currentcol) {
2440f6d58c54SBarry Smith             nrows++;
2441f6d58c54SBarry Smith             columnsforrow[currentcol] = col;
2442f6d58c54SBarry Smith             /* next three lines insert new entry into linked list */
2443f6d58c54SBarry Smith             rowhit[mfm]               = currentcol;
2444f6d58c54SBarry Smith             rowhit[currentcol]        = fm;
2445f6d58c54SBarry Smith             fm                        = currentcol;
2446f6d58c54SBarry Smith             /* fm points to present position in list since we know the columns are sorted */
2447f23aa3ddSBarry Smith           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected");
2448f6d58c54SBarry Smith         }
2449f6d58c54SBarry Smith       }
2450f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2451f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2452f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2453f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2454f6d58c54SBarry Smith       /* now store the linked list of rows into c->rows[i] */
2455f6d58c54SBarry Smith       nrows = 0;
2456f6d58c54SBarry Smith       fm    = rowhit[M];
2457f6d58c54SBarry Smith       do {
2458f6d58c54SBarry Smith         c->rows[i][nrows]            = fm;
2459f6d58c54SBarry Smith         c->columnsforrow[i][nrows++] = columnsforrow[fm];
2460f6d58c54SBarry Smith         fm                           = rowhit[fm];
2461f6d58c54SBarry Smith       } while (fm < M);
2462f6d58c54SBarry Smith     } /* ---------------------------------------------------------------------------------------*/
2463f6d58c54SBarry Smith     ierr = PetscFree(cols);CHKERRQ(ierr);
2464f6d58c54SBarry Smith   }
2465f6d58c54SBarry Smith 
2466f6d58c54SBarry Smith   /* Optimize by adding the vscale, and scaleforrow[][] fields */
2467f6d58c54SBarry Smith   /*
2468f6d58c54SBarry Smith        vscale will contain the "diagonal" on processor scalings followed by the off processor
2469f6d58c54SBarry Smith   */
2470f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) {
2471f6d58c54SBarry Smith     PetscInt *garray;
2472f6d58c54SBarry Smith     ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr);
2473f6d58c54SBarry Smith     for (i=0; i<baij->B->cmap->n/bs; i++) {
2474f6d58c54SBarry Smith       for (j=0; j<bs; j++) {
2475f6d58c54SBarry Smith         garray[i*bs+j] = bs*baij->garray[i]+j;
2476f6d58c54SBarry Smith       }
2477f6d58c54SBarry Smith     }
2478f6d58c54SBarry Smith     ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr);
2479f6d58c54SBarry Smith     ierr = PetscFree(garray);CHKERRQ(ierr);
2480f6d58c54SBarry Smith     CHKMEMQ;
2481f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2482f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2483f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2484f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2485f6d58c54SBarry Smith         col = c->columnsforrow[k][l];
2486f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2487f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2488f6d58c54SBarry Smith           colb = col - cstart;
2489f6d58c54SBarry Smith         } else {
2490f6d58c54SBarry Smith           /* column  is in "off-processor" part */
2491f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2492f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2493f6d58c54SBarry Smith           colb --;
2494f6d58c54SBarry Smith #else
2495f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2496f6d58c54SBarry Smith #endif
2497f6d58c54SBarry Smith           colb = colb/bs;
2498f6d58c54SBarry Smith           colb += cend - cstart;
2499f6d58c54SBarry Smith         }
2500f6d58c54SBarry Smith         c->vscaleforrow[k][l] = colb;
2501f6d58c54SBarry Smith       }
2502f6d58c54SBarry Smith     }
2503f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GHOSTED) {
2504f6d58c54SBarry Smith     /* Get gtol mapping */
2505f6d58c54SBarry Smith     PetscInt N = mat->cmap->N, *gtol;
2506f6d58c54SBarry Smith     ierr = PetscMalloc((N+1)*sizeof(PetscInt),&gtol);CHKERRQ(ierr);
2507f6d58c54SBarry Smith     for (i=0; i<N; i++) gtol[i] = -1;
2508f6d58c54SBarry Smith     for (i=0; i<map->n; i++) gtol[ltog[i]] = i;
2509f6d58c54SBarry Smith 
2510f6d58c54SBarry Smith     c->vscale = 0; /* will be created in MatFDColoringApply() */
2511f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2512f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2513f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2514f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2515f6d58c54SBarry Smith         col = c->columnsforrow[k][l];      /* global column index */
2516f6d58c54SBarry Smith         c->vscaleforrow[k][l] = gtol[col]; /* local column index */
2517f6d58c54SBarry Smith       }
2518f6d58c54SBarry Smith     }
2519f6d58c54SBarry Smith     ierr = PetscFree(gtol);CHKERRQ(ierr);
2520f6d58c54SBarry Smith   }
2521f6d58c54SBarry Smith   ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr);
2522f6d58c54SBarry Smith 
2523f6d58c54SBarry Smith   ierr = PetscFree(rowhit);CHKERRQ(ierr);
2524f6d58c54SBarry Smith   ierr = PetscFree(columnsforrow);CHKERRQ(ierr);
2525f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2526f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2527f6d58c54SBarry Smith     CHKMEMQ;
2528f6d58c54SBarry Smith   PetscFunctionReturn(0);
2529f6d58c54SBarry Smith }
2530f6d58c54SBarry Smith 
2531f6d58c54SBarry Smith #undef __FUNCT__
2532d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ"
2533d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2534f6d58c54SBarry Smith {
2535f6d58c54SBarry Smith   Mat            B;
2536f6d58c54SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
2537f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2538f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2539f6d58c54SBarry Smith   PetscErrorCode ierr;
2540f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2541f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2542f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2543f6d58c54SBarry Smith 
2544f6d58c54SBarry Smith   PetscFunctionBegin;
2545f6d58c54SBarry Smith   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2546f6d58c54SBarry Smith   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2547f6d58c54SBarry Smith 
2548f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2549f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2550f6d58c54SBarry Smith   */
2551f6d58c54SBarry Smith   ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
2552f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2553f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2554f6d58c54SBarry Smith   }
2555f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2556f6d58c54SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr);
2557f6d58c54SBarry Smith   displs     = recvcounts + size;
2558f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2559f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2560f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2561f6d58c54SBarry Smith   }
2562f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2563f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2564f6d58c54SBarry Smith #else
2565f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2566f6d58c54SBarry Smith #endif
2567f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2568f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2569f6d58c54SBarry Smith   */
2570f6d58c54SBarry Smith   ierr  = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2571f6d58c54SBarry Smith   ierr  = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2572f6d58c54SBarry Smith   ierr  = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2573f6d58c54SBarry Smith   ierr  = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2574f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2575f6d58c54SBarry Smith 
2576f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2577f6d58c54SBarry Smith     Copy my part of matrix column indices over
2578f6d58c54SBarry Smith   */
2579f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2580f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2581f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2582f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2583f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2584f6d58c54SBarry Smith   cnt        = 0;
2585f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2586f6d58c54SBarry Smith 
2587f6d58c54SBarry Smith     /* put in lower diagonal portion */
2588f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2589f6d58c54SBarry Smith     while (m > 0) {
2590f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2591f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2592f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2593f6d58c54SBarry Smith       m--;
2594f6d58c54SBarry Smith     }
2595f6d58c54SBarry Smith 
2596f6d58c54SBarry Smith     /* put in diagonal portion */
2597f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2598f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2599f6d58c54SBarry Smith     }
2600f6d58c54SBarry Smith 
2601f6d58c54SBarry Smith     /* put in upper diagonal portion */
2602f6d58c54SBarry Smith     while (m-- > 0) {
2603f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2604f6d58c54SBarry Smith     }
2605f6d58c54SBarry Smith   }
2606e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2607f6d58c54SBarry Smith 
2608f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2609f6d58c54SBarry Smith     Gather all column indices to all processors
2610f6d58c54SBarry Smith   */
2611f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2612f6d58c54SBarry Smith     recvcounts[i] = 0;
2613f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2614f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2615f6d58c54SBarry Smith     }
2616f6d58c54SBarry Smith   }
2617f6d58c54SBarry Smith   displs[0]  = 0;
2618f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2619f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2620f6d58c54SBarry Smith   }
2621f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2622f6d58c54SBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2623f6d58c54SBarry Smith #else
2624f6d58c54SBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2625f6d58c54SBarry Smith #endif
2626f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2627f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2628f6d58c54SBarry Smith   */
2629f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2630f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2631f6d58c54SBarry Smith   /* set the b->i indices */
2632f6d58c54SBarry Smith   b->i[0] = 0;
2633f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2634f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2635f6d58c54SBarry Smith   }
2636f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2637f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2638f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2639f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2640f6d58c54SBarry Smith 
2641f6d58c54SBarry Smith   if (A->symmetric) {
2642f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2643f6d58c54SBarry Smith   } else if (A->hermitian) {
2644f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2645f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2646f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2647f6d58c54SBarry Smith   }
2648f6d58c54SBarry Smith   *newmat = B;
2649f6d58c54SBarry Smith   PetscFunctionReturn(0);
2650f6d58c54SBarry Smith }
2651f6d58c54SBarry Smith 
2652b1a666ecSBarry Smith #undef __FUNCT__
2653b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2654b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2655b1a666ecSBarry Smith {
2656b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2657b1a666ecSBarry Smith   PetscErrorCode ierr;
2658b1a666ecSBarry Smith   Vec            bb1 = 0;
2659b1a666ecSBarry Smith 
2660b1a666ecSBarry Smith   PetscFunctionBegin;
2661b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2662b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2663b1a666ecSBarry Smith     PetscFunctionReturn(0);
2664b1a666ecSBarry Smith   }
2665b1a666ecSBarry Smith 
26664e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
26674e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26684e980039SJed Brown   }
26694e980039SJed Brown 
2670b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2671b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2672b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2673b1a666ecSBarry Smith       its--;
2674b1a666ecSBarry Smith     }
2675b1a666ecSBarry Smith 
2676b1a666ecSBarry Smith     while (its--) {
2677b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2678b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2679b1a666ecSBarry Smith 
2680b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2681b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2682b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2683b1a666ecSBarry Smith 
2684b1a666ecSBarry Smith       /* local sweep */
2685b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2686b1a666ecSBarry Smith     }
2687b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2688b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2689b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2690b1a666ecSBarry Smith       its--;
2691b1a666ecSBarry Smith     }
2692b1a666ecSBarry Smith     while (its--) {
2693b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2694b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2695b1a666ecSBarry Smith 
2696b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2697b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2698b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2699b1a666ecSBarry Smith 
2700b1a666ecSBarry Smith       /* local sweep */
2701b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2702b1a666ecSBarry Smith     }
2703b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2704b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2705b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2706b1a666ecSBarry Smith       its--;
2707b1a666ecSBarry Smith     }
2708b1a666ecSBarry Smith     while (its--) {
2709b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2710b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2711b1a666ecSBarry Smith 
2712b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2713b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2714b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2715b1a666ecSBarry Smith 
2716b1a666ecSBarry Smith       /* local sweep */
2717b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2718b1a666ecSBarry Smith     }
2719e7e72b3dSBarry Smith   } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2720b1a666ecSBarry Smith 
27216bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2722b1a666ecSBarry Smith   PetscFunctionReturn(0);
2723b1a666ecSBarry Smith }
2724b1a666ecSBarry Smith 
27257087cfbeSBarry Smith extern PetscErrorCode  MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*);
2726f6d58c54SBarry Smith 
2727bbead8a2SBarry Smith #undef __FUNCT__
2728bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ"
2729713ccfa9SJed Brown PetscErrorCode  MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2730bbead8a2SBarry Smith {
2731bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2732bbead8a2SBarry Smith   PetscErrorCode ierr;
2733bbead8a2SBarry Smith 
2734bbead8a2SBarry Smith   PetscFunctionBegin;
2735bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
2736bbead8a2SBarry Smith   PetscFunctionReturn(0);
2737bbead8a2SBarry Smith }
2738bbead8a2SBarry Smith 
27398c7482ecSBarry Smith 
274079bdfe76SSatish Balay /* -------------------------------------------------------------------*/
2741cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
2742cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
2743cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
2744cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
2745cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
274697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
27477c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
27487c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
2749cc2dc46cSBarry Smith        0,
2750cc2dc46cSBarry Smith        0,
2751cc2dc46cSBarry Smith        0,
275297304618SKris Buschelman /*10*/ 0,
2753cc2dc46cSBarry Smith        0,
2754cc2dc46cSBarry Smith        0,
2755b1a666ecSBarry Smith        MatSOR_MPIBAIJ,
2756cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
275797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
27587fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
2759cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
2760cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
2761cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
276297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
2763cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2764cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2765cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
2766d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ,
2767cc2dc46cSBarry Smith        0,
2768cc2dc46cSBarry Smith        0,
2769cc2dc46cSBarry Smith        0,
2770cc2dc46cSBarry Smith        0,
27714994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ,
2772273d9f13SBarry Smith        0,
2773cc2dc46cSBarry Smith        0,
2774cc2dc46cSBarry Smith        0,
2775cc2dc46cSBarry Smith        0,
2776d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ,
2777cc2dc46cSBarry Smith        0,
2778cc2dc46cSBarry Smith        0,
2779cc2dc46cSBarry Smith        0,
2780cc2dc46cSBarry Smith        0,
2781d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ,
2782cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2783cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2784cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
27853c896bc6SHong Zhang        MatCopy_MPIBAIJ,
2786d519adbfSMatthew Knepley /*44*/ 0,
2787cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2788cc2dc46cSBarry Smith        0,
2789cc2dc46cSBarry Smith        0,
2790cc2dc46cSBarry Smith        0,
2791f73d5cc4SBarry Smith /*49*/ 0,
2792cc2dc46cSBarry Smith        0,
2793cc2dc46cSBarry Smith        0,
2794cc2dc46cSBarry Smith        0,
2795cc2dc46cSBarry Smith        0,
2796f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ,
2797cc2dc46cSBarry Smith        0,
2798cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
279982094794SBarry Smith        MatPermute_MPIBAIJ,
2800cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
2801d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ,
2802f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2803f14a1c24SBarry Smith        MatView_MPIBAIJ,
2804357abbc8SBarry Smith        0,
28057843d17aSBarry Smith        0,
2806d519adbfSMatthew Knepley /*64*/ 0,
28077843d17aSBarry Smith        0,
28087843d17aSBarry Smith        0,
28097843d17aSBarry Smith        0,
28107843d17aSBarry Smith        0,
2811d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ,
28127843d17aSBarry Smith        0,
281397304618SKris Buschelman        0,
281497304618SKris Buschelman        0,
281597304618SKris Buschelman        0,
2816d519adbfSMatthew Knepley /*74*/ 0,
2817f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
281897304618SKris Buschelman        0,
281997304618SKris Buschelman        0,
282097304618SKris Buschelman        0,
2821d519adbfSMatthew Knepley /*79*/ 0,
282297304618SKris Buschelman        0,
282397304618SKris Buschelman        0,
282497304618SKris Buschelman        0,
28255bba2384SShri Abhyankar        MatLoad_MPIBAIJ,
2826d519adbfSMatthew Knepley /*84*/ 0,
2827865e5f61SKris Buschelman        0,
2828865e5f61SKris Buschelman        0,
2829865e5f61SKris Buschelman        0,
2830865e5f61SKris Buschelman        0,
2831d519adbfSMatthew Knepley /*89*/ 0,
2832865e5f61SKris Buschelman        0,
2833865e5f61SKris Buschelman        0,
2834865e5f61SKris Buschelman        0,
2835865e5f61SKris Buschelman        0,
2836d519adbfSMatthew Knepley /*94*/ 0,
2837865e5f61SKris Buschelman        0,
2838865e5f61SKris Buschelman        0,
283999cafbc1SBarry Smith        0,
284099cafbc1SBarry Smith        0,
2841d519adbfSMatthew Knepley /*99*/ 0,
284299cafbc1SBarry Smith        0,
284399cafbc1SBarry Smith        0,
284499cafbc1SBarry Smith        0,
284599cafbc1SBarry Smith        0,
2846d519adbfSMatthew Knepley /*104*/0,
284799cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
28488c7482ecSBarry Smith        MatImaginaryPart_MPIBAIJ,
28498c7482ecSBarry Smith        0,
28508c7482ecSBarry Smith        0,
2851d519adbfSMatthew Knepley /*109*/0,
28528c7482ecSBarry Smith        0,
28538c7482ecSBarry Smith        0,
28548c7482ecSBarry Smith        0,
28558c7482ecSBarry Smith        0,
2856d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
28578c7482ecSBarry Smith        0,
28584683f7a4SShri Abhyankar        MatGetGhosts_MPIBAIJ,
28594683f7a4SShri Abhyankar        0,
28604683f7a4SShri Abhyankar        0,
28614683f7a4SShri Abhyankar /*119*/0,
28624683f7a4SShri Abhyankar        0,
28634683f7a4SShri Abhyankar        0,
2864bbead8a2SBarry Smith        0,
2865bbead8a2SBarry Smith        0,
2866bbead8a2SBarry Smith /*124*/0,
2867bbead8a2SBarry Smith        0,
2868bbead8a2SBarry Smith        MatInvertBlockDiagonal_MPIBAIJ
28698c7482ecSBarry Smith };
287079bdfe76SSatish Balay 
2871e18c124aSSatish Balay EXTERN_C_BEGIN
28724a2ae208SSatish Balay #undef __FUNCT__
28734a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
287411bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
28755ef9f2a5SBarry Smith {
28765ef9f2a5SBarry Smith   PetscFunctionBegin;
28775ef9f2a5SBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
28785ef9f2a5SBarry Smith   PetscFunctionReturn(0);
28795ef9f2a5SBarry Smith }
2880e18c124aSSatish Balay EXTERN_C_END
288179bdfe76SSatish Balay 
2882273d9f13SBarry Smith EXTERN_C_BEGIN
28837087cfbeSBarry Smith extern PetscErrorCode  MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2884d94109b8SHong Zhang EXTERN_C_END
2885d94109b8SHong Zhang 
2886b8d659d7SLisandro Dalcin EXTERN_C_BEGIN
2887aac34f13SBarry Smith #undef __FUNCT__
2888aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2889cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2890aac34f13SBarry Smith {
2891b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2892b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2893b8d659d7SLisandro Dalcin   const PetscInt *JJ=0;
2894b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2895aac34f13SBarry Smith   PetscErrorCode ierr;
2896aac34f13SBarry Smith 
2897aac34f13SBarry Smith   PetscFunctionBegin;
289826283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
289926283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
290026283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
290126283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2902e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2903d0f46423SBarry Smith   m      = B->rmap->n/bs;
2904d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2905d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2906d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2907b8d659d7SLisandro Dalcin 
2908e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2909fca92195SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
2910aac34f13SBarry Smith   for (i=0; i<m; i++) {
2911cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2912e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2913b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2914cf12db73SBarry Smith     JJ  = jj + ii[i];
2915b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2916aac34f13SBarry Smith       if (*JJ >= cstart) break;
2917aac34f13SBarry Smith       JJ++;
2918aac34f13SBarry Smith     }
2919aac34f13SBarry Smith     d = 0;
2920b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2921aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2922aac34f13SBarry Smith       d++;
2923aac34f13SBarry Smith     }
2924aac34f13SBarry Smith     d_nnz[i] = d;
2925b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2926aac34f13SBarry Smith   }
2927aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2928fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2929aac34f13SBarry Smith 
2930b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2931b8d659d7SLisandro Dalcin   if (!values) {
2932fca92195SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2933b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2934b8d659d7SLisandro Dalcin   }
2935b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2936b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2937cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2938cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2939cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2940b8d659d7SLisandro Dalcin     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2941aac34f13SBarry Smith   }
2942aac34f13SBarry Smith 
2943b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2944aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2945aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29467827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2947aac34f13SBarry Smith   PetscFunctionReturn(0);
2948aac34f13SBarry Smith }
2949b8d659d7SLisandro Dalcin EXTERN_C_END
2950aac34f13SBarry Smith 
2951aac34f13SBarry Smith #undef __FUNCT__
2952aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2953aac34f13SBarry Smith /*@C
2954dfb205c3SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2955aac34f13SBarry Smith    (the default parallel PETSc format).
2956aac34f13SBarry Smith 
2957aac34f13SBarry Smith    Collective on MPI_Comm
2958aac34f13SBarry Smith 
2959aac34f13SBarry Smith    Input Parameters:
2960aac34f13SBarry Smith +  A - the matrix
2961dfb205c3SBarry Smith .  bs - the block size
2962aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2963aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2964aac34f13SBarry Smith -  v - optional values in the matrix
2965aac34f13SBarry Smith 
2966aac34f13SBarry Smith    Level: developer
2967aac34f13SBarry Smith 
2968aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2969aac34f13SBarry Smith 
297069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2971aac34f13SBarry Smith @*/
29727087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2973aac34f13SBarry Smith {
29744ac538c5SBarry Smith   PetscErrorCode ierr;
2975aac34f13SBarry Smith 
2976aac34f13SBarry Smith   PetscFunctionBegin;
29776ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
29786ba663aaSJed Brown   PetscValidType(B,1);
29796ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
29804ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2981aac34f13SBarry Smith   PetscFunctionReturn(0);
2982aac34f13SBarry Smith }
2983aac34f13SBarry Smith 
2984d94109b8SHong Zhang EXTERN_C_BEGIN
29854a2ae208SSatish Balay #undef __FUNCT__
2986a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
29877087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2988a23d5eceSKris Buschelman {
2989a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2990dfbe8321SBarry Smith   PetscErrorCode ierr;
2991535b19f3SBarry Smith   PetscInt       i;
29922576faa2SJed Brown   PetscBool      d_realalloc = PETSC_FALSE,o_realalloc = PETSC_FALSE;
2993a23d5eceSKris Buschelman 
2994a23d5eceSKris Buschelman   PetscFunctionBegin;
29952576faa2SJed Brown   if (d_nz >= 0 || d_nnz) d_realalloc = PETSC_TRUE;
29962576faa2SJed Brown   if (o_nz >= 0 || o_nnz) o_realalloc = PETSC_TRUE;
2997db4efbfdSBarry Smith 
2998a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2999a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
3000e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
3001e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
3002899cda47SBarry Smith 
300326283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
300426283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
300526283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
300626283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
3007e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
3008899cda47SBarry Smith 
3009a23d5eceSKris Buschelman   if (d_nnz) {
3010d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
3011e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
3012a23d5eceSKris Buschelman     }
3013a23d5eceSKris Buschelman   }
3014a23d5eceSKris Buschelman   if (o_nnz) {
3015d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
3016e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
3017a23d5eceSKris Buschelman     }
3018a23d5eceSKris Buschelman   }
3019a23d5eceSKris Buschelman 
3020a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
3021a23d5eceSKris Buschelman   b->bs2 = bs*bs;
3022d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
3023d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
3024d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
3025d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
3026a23d5eceSKris Buschelman 
3027a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
3028d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
3029a23d5eceSKris Buschelman   }
3030d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
3031d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
3032d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
3033d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
3034a23d5eceSKris Buschelman 
3035526dfc15SBarry Smith   if (!B->preallocated) {
3036f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
3037d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
30389c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
303952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
3040f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
3041d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
30429c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
304352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
30447adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
3045526dfc15SBarry Smith   }
3046a23d5eceSKris Buschelman 
3047526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
3048526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
30492576faa2SJed Brown   /* Do not error if the user did not give real preallocation information. Ugly because this would overwrite a previous user call to MatSetOption(). */
30502576faa2SJed Brown   if (!d_realalloc) {ierr = MatSetOption(b->A,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);}
30512576faa2SJed Brown   if (!o_realalloc) {ierr = MatSetOption(b->B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);}
3052526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
3053a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3054a23d5eceSKris Buschelman }
3055a23d5eceSKris Buschelman EXTERN_C_END
3056a23d5eceSKris Buschelman 
3057a23d5eceSKris Buschelman EXTERN_C_BEGIN
30587087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
30597087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
306092b32695SKris Buschelman EXTERN_C_END
30615bf65638SKris Buschelman 
306282094794SBarry Smith 
306382094794SBarry Smith EXTERN_C_BEGIN
306482094794SBarry Smith #undef __FUNCT__
306582094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
306619fd82e9SBarry Smith PetscErrorCode  MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
306782094794SBarry Smith {
306882094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
306982094794SBarry Smith   PetscErrorCode ierr;
307082094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
307182094794SBarry Smith   PetscInt       M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
307282094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
307382094794SBarry Smith 
307482094794SBarry Smith   PetscFunctionBegin;
307582094794SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr);
307682094794SBarry Smith   ii[0] = 0;
307782094794SBarry Smith   CHKMEMQ;
307882094794SBarry Smith   for (i=0; i<M; i++) {
3079e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
3080e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
308182094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
30825ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
30835ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
30845ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
30855ee9ba1cSJed Brown     }
308682094794SBarry Smith   CHKMEMQ;
308782094794SBarry Smith   }
308882094794SBarry Smith   ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr);
308982094794SBarry Smith   cnt = 0;
309082094794SBarry Smith   for (i=0; i<M; i++) {
309182094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
309282094794SBarry Smith       if (garray[jo[j]] > rstart) break;
309382094794SBarry Smith       jj[cnt++] = garray[jo[j]];
309482094794SBarry Smith   CHKMEMQ;
309582094794SBarry Smith     }
309682094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
30975ee9ba1cSJed Brown       if (jd[k] != i) {
309882094794SBarry Smith         jj[cnt++] = rstart + jd[k];
309982094794SBarry Smith   CHKMEMQ;
310082094794SBarry Smith       }
31015ee9ba1cSJed Brown     }
310282094794SBarry Smith     for (;j<io[i+1]; j++) {
310382094794SBarry Smith       jj[cnt++] = garray[jo[j]];
310482094794SBarry Smith   CHKMEMQ;
310582094794SBarry Smith     }
310682094794SBarry Smith   }
310782094794SBarry Smith   ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr);
310882094794SBarry Smith   PetscFunctionReturn(0);
310982094794SBarry Smith }
3110dbf0e21dSBarry Smith EXTERN_C_END
311182094794SBarry Smith 
3112c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
31131e66c38aSShri Abhyankar EXTERN_C_BEGIN
311419fd82e9SBarry Smith PetscErrorCode  MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
31151e66c38aSShri Abhyankar EXTERN_C_END
311662471d69SBarry Smith 
311762471d69SBarry Smith EXTERN_C_BEGIN
311862471d69SBarry Smith #undef __FUNCT__
311962471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ"
312019fd82e9SBarry Smith PetscErrorCode  MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
312162471d69SBarry Smith {
312262471d69SBarry Smith   PetscErrorCode ierr;
312362471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
312462471d69SBarry Smith   Mat            B;
312585a69837SSatish Balay   Mat_MPIAIJ     *b;
312662471d69SBarry Smith 
312762471d69SBarry Smith   PetscFunctionBegin;
312862471d69SBarry Smith   if (!A->assembled) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_SUP,"Matrix must be assembled");
312962471d69SBarry Smith 
313062471d69SBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
313162471d69SBarry Smith   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
31326d0a4a0eSHong Zhang   ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
31336d0a4a0eSHong Zhang   ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr);
313462471d69SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
313562471d69SBarry Smith   b = (Mat_MPIAIJ*) B->data;
313662471d69SBarry Smith 
31376bf464f9SBarry Smith   ierr = MatDestroy(&b->A);CHKERRQ(ierr);
31386bf464f9SBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
3139ab9863d7SBarry Smith   ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
314062471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
314162471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
314262471d69SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
314362471d69SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31446a719282SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31456a719282SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
314662471d69SBarry Smith   if (reuse == MAT_REUSE_MATRIX) {
314762471d69SBarry Smith     ierr = MatHeaderReplace(A,B);CHKERRQ(ierr);
314862471d69SBarry Smith   } else {
314962471d69SBarry Smith    *newmat = B;
315062471d69SBarry Smith   }
315162471d69SBarry Smith   PetscFunctionReturn(0);
315262471d69SBarry Smith }
315362471d69SBarry Smith EXTERN_C_END
315462471d69SBarry Smith 
3155450b117fSShri Abhyankar EXTERN_C_BEGIN
3156450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
3157bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*);
3158450b117fSShri Abhyankar #endif
3159450b117fSShri Abhyankar EXTERN_C_END
3160450b117fSShri Abhyankar 
31610bad9183SKris Buschelman /*MC
3162fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
31630bad9183SKris Buschelman 
31640bad9183SKris Buschelman    Options Database Keys:
31658c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
31668c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
31678c07d4e3SBarry Smith - -mat_use_hash_table <fact>
31680bad9183SKris Buschelman 
31690bad9183SKris Buschelman   Level: beginner
31700bad9183SKris Buschelman 
31710bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
31720bad9183SKris Buschelman M*/
31730bad9183SKris Buschelman 
317492b32695SKris Buschelman EXTERN_C_BEGIN
317519fd82e9SBarry Smith extern PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
3176c0cdd4a1SDahai Guo EXTERN_C_END
3177c0cdd4a1SDahai Guo 
3178c0cdd4a1SDahai Guo EXTERN_C_BEGIN
3179a23d5eceSKris Buschelman #undef __FUNCT__
31804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
31817087cfbeSBarry Smith PetscErrorCode  MatCreate_MPIBAIJ(Mat B)
3182273d9f13SBarry Smith {
3183273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
3184dfbe8321SBarry Smith   PetscErrorCode ierr;
3185ace3abfcSBarry Smith   PetscBool      flg;
3186273d9f13SBarry Smith 
3187273d9f13SBarry Smith   PetscFunctionBegin;
318838f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
318982502324SSatish Balay   B->data = (void*)b;
319082502324SSatish Balay 
3191273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
3192273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
3193273d9f13SBarry Smith 
3194273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
31957adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
31967adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
3197273d9f13SBarry Smith 
3198273d9f13SBarry Smith   /* build local table of row and column ownerships */
3199899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
3200273d9f13SBarry Smith 
3201273d9f13SBarry Smith   /* build cache for off array entries formed */
32027adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
3203273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
3204273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
3205273d9f13SBarry Smith   b->garray      = PETSC_NULL;
3206273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
3207273d9f13SBarry Smith 
3208273d9f13SBarry Smith   /* stuff used in block assembly */
3209273d9f13SBarry Smith   b->barray       = 0;
3210273d9f13SBarry Smith 
3211273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
3212273d9f13SBarry Smith   b->lvec         = 0;
3213273d9f13SBarry Smith   b->Mvctx        = 0;
3214273d9f13SBarry Smith 
3215273d9f13SBarry Smith   /* stuff for MatGetRow() */
3216273d9f13SBarry Smith   b->rowindices   = 0;
3217273d9f13SBarry Smith   b->rowvalues    = 0;
3218273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
3219273d9f13SBarry Smith 
3220273d9f13SBarry Smith   /* hash table stuff */
3221273d9f13SBarry Smith   b->ht           = 0;
3222273d9f13SBarry Smith   b->hd           = 0;
3223273d9f13SBarry Smith   b->ht_size      = 0;
3224273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
3225273d9f13SBarry Smith   b->ht_fact      = 0;
3226273d9f13SBarry Smith   b->ht_total_ct  = 0;
3227273d9f13SBarry Smith   b->ht_insert_ct = 0;
3228273d9f13SBarry Smith 
32297a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
32307a868f3eSHong Zhang   b->ijonly       = PETSC_FALSE;
32317a868f3eSHong Zhang 
32327adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
3233acfcf0e5SJed Brown     ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
3234273d9f13SBarry Smith     if (flg) {
3235f6275e2eSBarry Smith       PetscReal fact = 1.39;
32364e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
32378c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
3238273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
3239273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
32401e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
3241273d9f13SBarry Smith     }
32428c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
32438c07d4e3SBarry Smith 
3244450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
3245bccb9932SShri Abhyankar   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr);
3246450b117fSShri Abhyankar #endif
324782094794SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",
324882094794SBarry Smith                                      "MatConvert_MPIBAIJ_MPIAdj",
324982094794SBarry Smith                                       MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
325062471d69SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",
325162471d69SBarry Smith                                      "MatConvert_MPIBAIJ_MPIAIJ",
325262471d69SBarry Smith                                       MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
3253ad5247fdSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",
3254ad5247fdSHong Zhang                                      "MatConvert_MPIBAIJ_MPISBAIJ",
3255ad5247fdSHong Zhang                                       MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
3256273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
3257273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
3258273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3259273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
3260273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
3261273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3262273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
3263273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
3264273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3265a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
3266a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
3267a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3268aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
326944ec7894SLisandro Dalcin                                      "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
3270aac34f13SBarry Smith                                      MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
327192b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
327292b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
327392b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
32745bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
32755bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
32765bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
3277c0cdd4a1SDahai Guo   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",
3278c0cdd4a1SDahai Guo                                      "MatConvert_MPIBAIJ_MPIBSTRM",
3279c0cdd4a1SDahai Guo                                       MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr);
328017667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
3281273d9f13SBarry Smith   PetscFunctionReturn(0);
3282273d9f13SBarry Smith }
3283273d9f13SBarry Smith EXTERN_C_END
3284273d9f13SBarry Smith 
3285209238afSKris Buschelman /*MC
3286002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3287209238afSKris Buschelman 
3288209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3289209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3290209238afSKris Buschelman 
3291209238afSKris Buschelman    Options Database Keys:
3292209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3293209238afSKris Buschelman 
3294209238afSKris Buschelman   Level: beginner
3295209238afSKris Buschelman 
329669b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3297209238afSKris Buschelman M*/
3298209238afSKris Buschelman 
32994a2ae208SSatish Balay #undef __FUNCT__
33004a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3301273d9f13SBarry Smith /*@C
3302aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3303273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3304273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3305273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3306273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3307273d9f13SBarry Smith 
3308273d9f13SBarry Smith    Collective on Mat
3309273d9f13SBarry Smith 
3310273d9f13SBarry Smith    Input Parameters:
3311273d9f13SBarry Smith +  A - the matrix
3312273d9f13SBarry Smith .  bs   - size of blockk
3313273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3314273d9f13SBarry Smith            submatrix  (same for all local rows)
3315273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3316273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
331795742e49SBarry Smith            row) or PETSC_NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
331895742e49SBarry Smith            set it even if it is zero.
3319273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3320273d9f13SBarry Smith            submatrix (same for all local rows).
3321273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3322273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
3323273d9f13SBarry Smith            each block row) or PETSC_NULL.
3324273d9f13SBarry Smith 
332549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3326273d9f13SBarry Smith 
3327273d9f13SBarry Smith    Options Database Keys:
33288c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
33298c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3330273d9f13SBarry Smith 
3331273d9f13SBarry Smith    Notes:
3332273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3333273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3334273d9f13SBarry Smith 
3335273d9f13SBarry Smith    Storage Information:
3336273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3337273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3338273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3339273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3340273d9f13SBarry Smith 
3341273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3342273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
3343273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
3344273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3345273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3346273d9f13SBarry Smith 
3347273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3348273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3349273d9f13SBarry Smith 
3350273d9f13SBarry Smith .vb
3351273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3352273d9f13SBarry Smith           -------------------
3353273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
3354273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
3355273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
3356273d9f13SBarry Smith           -------------------
3357273d9f13SBarry Smith .ve
3358273d9f13SBarry Smith 
3359273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3360273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3361273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3362273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3363273d9f13SBarry Smith 
3364273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3365273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3366273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3367273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3368273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3369273d9f13SBarry Smith    matrices.
3370273d9f13SBarry Smith 
3371aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3372aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3373aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3374aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3375aa95bbe8SBarry Smith 
3376273d9f13SBarry Smith    Level: intermediate
3377273d9f13SBarry Smith 
3378273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3379273d9f13SBarry Smith 
3380ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3381273d9f13SBarry Smith @*/
33827087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3383273d9f13SBarry Smith {
33844ac538c5SBarry Smith   PetscErrorCode ierr;
3385273d9f13SBarry Smith 
3386273d9f13SBarry Smith   PetscFunctionBegin;
33876ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
33886ba663aaSJed Brown   PetscValidType(B,1);
33896ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
33904ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3391273d9f13SBarry Smith   PetscFunctionReturn(0);
3392273d9f13SBarry Smith }
3393273d9f13SBarry Smith 
33944a2ae208SSatish Balay #undef __FUNCT__
339569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ"
339679bdfe76SSatish Balay /*@C
339769b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
339879bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
339979bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
340079bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
340179bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
340279bdfe76SSatish Balay 
3403db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3404db81eaa0SLois Curfman McInnes 
340579bdfe76SSatish Balay    Input Parameters:
3406db81eaa0SLois Curfman McInnes +  comm - MPI communicator
340779bdfe76SSatish Balay .  bs   - size of blockk
340879bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
340992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
341092e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
341192e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
341292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
341392e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3414be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3415be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
341647a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
341779bdfe76SSatish Balay            submatrix  (same for all local rows)
341847a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
341992e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
342095742e49SBarry Smith            row) or PETSC_NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
342195742e49SBarry Smith            and set it even if it is zero.
342247a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
342379bdfe76SSatish Balay            submatrix (same for all local rows).
342447a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
342592e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
342692e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
342779bdfe76SSatish Balay 
342879bdfe76SSatish Balay    Output Parameter:
342979bdfe76SSatish Balay .  A - the matrix
343079bdfe76SSatish Balay 
3431db81eaa0SLois Curfman McInnes    Options Database Keys:
34328c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
34338c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
34343ffaccefSLois Curfman McInnes 
3435175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3436ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3437175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3438175b88e8SBarry Smith 
3439b259b22eSLois Curfman McInnes    Notes:
344049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
344149a6f317SBarry Smith 
344247a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
344347a75d0bSBarry Smith 
344479bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
344579bdfe76SSatish Balay    (possibly both).
344679bdfe76SSatish Balay 
3447be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3448be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3449be79a94dSBarry Smith 
345079bdfe76SSatish Balay    Storage Information:
345179bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
345279bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
345379bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
345479bdfe76SSatish Balay    local matrix (a rectangular submatrix).
345579bdfe76SSatish Balay 
345679bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
345779bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
345879bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
345979bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
346079bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
346179bdfe76SSatish Balay 
346279bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
346379bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
346479bdfe76SSatish Balay 
3465db81eaa0SLois Curfman McInnes .vb
3466db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3467db81eaa0SLois Curfman McInnes           -------------------
3468db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
3469db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
3470db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
3471db81eaa0SLois Curfman McInnes           -------------------
3472db81eaa0SLois Curfman McInnes .ve
347379bdfe76SSatish Balay 
347479bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
347579bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
347679bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
347757b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
347879bdfe76SSatish Balay 
3479d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3480d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
348179bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
348292e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
348392e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
34846da5968aSLois Curfman McInnes    matrices.
348579bdfe76SSatish Balay 
3486027ccd11SLois Curfman McInnes    Level: intermediate
3487027ccd11SLois Curfman McInnes 
348892e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
348979bdfe76SSatish Balay 
349069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
349179bdfe76SSatish Balay @*/
349269b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
349379bdfe76SSatish Balay {
34946849ba73SBarry Smith   PetscErrorCode ierr;
3495b24ad042SBarry Smith   PetscMPIInt    size;
349679bdfe76SSatish Balay 
3497d64ed03dSBarry Smith   PetscFunctionBegin;
3498f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3499f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3500d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3501273d9f13SBarry Smith   if (size > 1) {
3502273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3503273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3504273d9f13SBarry Smith   } else {
3505273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3506273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
35073914022bSBarry Smith   }
35083a40ed3dSBarry Smith   PetscFunctionReturn(0);
350979bdfe76SSatish Balay }
3510026e39d0SSatish Balay 
35114a2ae208SSatish Balay #undef __FUNCT__
35124a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
35136849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
35140ac07820SSatish Balay {
35150ac07820SSatish Balay   Mat            mat;
35160ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3517dfbe8321SBarry Smith   PetscErrorCode ierr;
3518b24ad042SBarry Smith   PetscInt       len=0;
35190ac07820SSatish Balay 
3520d64ed03dSBarry Smith   PetscFunctionBegin;
35210ac07820SSatish Balay   *newmat       = 0;
35227adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
3523d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
35247adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
35251d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
35267fff6886SHong Zhang 
3527d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3528273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
35290ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
35307fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
35317fff6886SHong Zhang 
3532273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
3533d0f46423SBarry Smith   mat->rmap->bs  = matin->rmap->bs;
35340ac07820SSatish Balay   a->bs2   = oldmat->bs2;
35350ac07820SSatish Balay   a->mbs   = oldmat->mbs;
35360ac07820SSatish Balay   a->nbs   = oldmat->nbs;
35370ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
35380ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
35390ac07820SSatish Balay 
35401e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
35411e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3542899cda47SBarry Smith 
35430ac07820SSatish Balay   a->size         = oldmat->size;
35440ac07820SSatish Balay   a->rank         = oldmat->rank;
3545aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3546aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3547aef5e8e0SSatish Balay   a->rowindices   = 0;
35480ac07820SSatish Balay   a->rowvalues    = 0;
35490ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
355030793edcSSatish Balay   a->barray       = 0;
3551899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3552899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3553899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3554899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
35550ac07820SSatish Balay 
3556133cdb44SSatish Balay   /* hash table stuff */
3557133cdb44SSatish Balay   a->ht           = 0;
3558133cdb44SSatish Balay   a->hd           = 0;
3559133cdb44SSatish Balay   a->ht_size      = 0;
3560133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
356125fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3562133cdb44SSatish Balay   a->ht_total_ct  = 0;
3563133cdb44SSatish Balay   a->ht_insert_ct = 0;
3564133cdb44SSatish Balay 
3565899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
35660ac07820SSatish Balay   if (oldmat->colmap) {
3567aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
35680f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
356948e59246SSatish Balay #else
3570b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
357152e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3572b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
357348e59246SSatish Balay #endif
35740ac07820SSatish Balay   } else a->colmap = 0;
35754beb1cfeSHong Zhang 
35760ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3577b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
357852e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3579b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
35800ac07820SSatish Balay   } else a->garray = 0;
35810ac07820SSatish Balay 
3582533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
35830ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
358452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
35850ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
358652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
35877fff6886SHong Zhang 
35882e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
358952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
35902e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
359152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
3592140e18c1SBarry Smith   ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
35930ac07820SSatish Balay   *newmat = mat;
35944beb1cfeSHong Zhang 
35953a40ed3dSBarry Smith   PetscFunctionReturn(0);
35960ac07820SSatish Balay }
359757b952d6SSatish Balay 
35984a2ae208SSatish Balay #undef __FUNCT__
35995bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ"
3600112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer)
36014683f7a4SShri Abhyankar {
36024683f7a4SShri Abhyankar   PetscErrorCode ierr;
36034683f7a4SShri Abhyankar   int            fd;
36044683f7a4SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
36054683f7a4SShri Abhyankar   PetscScalar    *vals,*buf;
36064683f7a4SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
36074683f7a4SShri Abhyankar   MPI_Status     status;
36084683f7a4SShri Abhyankar   PetscMPIInt    rank,size,maxnz;
36094683f7a4SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
36104683f7a4SShri Abhyankar   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
36114683f7a4SShri Abhyankar   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
36124683f7a4SShri Abhyankar   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
36134683f7a4SShri Abhyankar   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
36144683f7a4SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols;
36154683f7a4SShri Abhyankar 
36164683f7a4SShri Abhyankar   PetscFunctionBegin;
36174683f7a4SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
36184683f7a4SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
36194683f7a4SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
36204683f7a4SShri Abhyankar 
36214683f7a4SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
36224683f7a4SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
36234683f7a4SShri Abhyankar   if (!rank) {
36244683f7a4SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
36254683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
36264683f7a4SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
36274683f7a4SShri Abhyankar   }
36284683f7a4SShri Abhyankar 
36294683f7a4SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
36304683f7a4SShri Abhyankar 
36314683f7a4SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
36324683f7a4SShri Abhyankar   M = header[1]; N = header[2];
36334683f7a4SShri Abhyankar 
36344683f7a4SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
36354683f7a4SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
36364683f7a4SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
36374683f7a4SShri Abhyankar 
36384683f7a4SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
36394683f7a4SShri Abhyankar   if (sizesset) {
36404683f7a4SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
36414683f7a4SShri Abhyankar   }
3642abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
3643abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
36444683f7a4SShri Abhyankar 
36454683f7a4SShri Abhyankar   if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices");
36464683f7a4SShri Abhyankar 
36474683f7a4SShri Abhyankar   /*
36484683f7a4SShri Abhyankar      This code adds extra rows to make sure the number of rows is
36494683f7a4SShri Abhyankar      divisible by the blocksize
36504683f7a4SShri Abhyankar   */
36514683f7a4SShri Abhyankar   Mbs        = M/bs;
36524683f7a4SShri Abhyankar   extra_rows = bs - M + bs*Mbs;
36534683f7a4SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
36544683f7a4SShri Abhyankar   else                  Mbs++;
36554683f7a4SShri Abhyankar   if (extra_rows && !rank) {
36564683f7a4SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
36574683f7a4SShri Abhyankar   }
36584683f7a4SShri Abhyankar 
36594683f7a4SShri Abhyankar   /* determine ownership of all rows */
36604683f7a4SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
36614683f7a4SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
36624683f7a4SShri Abhyankar     m          = mbs*bs;
36634683f7a4SShri Abhyankar   } else { /* User set */
36644683f7a4SShri Abhyankar     m          = newmat->rmap->n;
36654683f7a4SShri Abhyankar     mbs        = m/bs;
36664683f7a4SShri Abhyankar   }
36674683f7a4SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
36684683f7a4SShri Abhyankar   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
36694683f7a4SShri Abhyankar 
36704683f7a4SShri Abhyankar   /* process 0 needs enough room for process with most rows */
36714683f7a4SShri Abhyankar   if (!rank) {
36724683f7a4SShri Abhyankar     mmax = rowners[1];
36731251c579SMatthew G Knepley     for (i=2; i<=size; i++) {
36744683f7a4SShri Abhyankar       mmax = PetscMax(mmax,rowners[i]);
36754683f7a4SShri Abhyankar     }
36764683f7a4SShri Abhyankar     mmax*=bs;
36774683f7a4SShri Abhyankar   } else mmax = m;
36784683f7a4SShri Abhyankar 
36794683f7a4SShri Abhyankar   rowners[0] = 0;
36804683f7a4SShri Abhyankar   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
36814683f7a4SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
36824683f7a4SShri Abhyankar   rstart = rowners[rank];
36834683f7a4SShri Abhyankar   rend   = rowners[rank+1];
36844683f7a4SShri Abhyankar 
36854683f7a4SShri Abhyankar   /* distribute row lengths to all processors */
36864683f7a4SShri Abhyankar   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
36874683f7a4SShri Abhyankar   if (!rank) {
36884683f7a4SShri Abhyankar     mend = m;
36894683f7a4SShri Abhyankar     if (size == 1) mend = mend - extra_rows;
36904683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
36914683f7a4SShri Abhyankar     for (j=mend; j<m; j++) locrowlens[j] = 1;
36924683f7a4SShri Abhyankar     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
36934683f7a4SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
36944683f7a4SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
36954683f7a4SShri Abhyankar     for (j=0; j<m; j++) {
36964683f7a4SShri Abhyankar       procsnz[0] += locrowlens[j];
36974683f7a4SShri Abhyankar     }
36984683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
36994683f7a4SShri Abhyankar       mend = browners[i+1] - browners[i];
37004683f7a4SShri Abhyankar       if (i == size-1) mend = mend - extra_rows;
37014683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
37024683f7a4SShri Abhyankar       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
37034683f7a4SShri Abhyankar       /* calculate the number of nonzeros on each processor */
37044683f7a4SShri Abhyankar       for (j=0; j<browners[i+1]-browners[i]; j++) {
37054683f7a4SShri Abhyankar         procsnz[i] += rowlengths[j];
37064683f7a4SShri Abhyankar       }
37074683f7a4SShri Abhyankar       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
37084683f7a4SShri Abhyankar     }
37094683f7a4SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
37104683f7a4SShri Abhyankar   } else {
37114683f7a4SShri Abhyankar     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
37124683f7a4SShri Abhyankar   }
37134683f7a4SShri Abhyankar 
37144683f7a4SShri Abhyankar   if (!rank) {
37154683f7a4SShri Abhyankar     /* determine max buffer needed and allocate it */
37164683f7a4SShri Abhyankar     maxnz = procsnz[0];
37174683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
37184683f7a4SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
37194683f7a4SShri Abhyankar     }
37204683f7a4SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
37214683f7a4SShri Abhyankar 
37224683f7a4SShri Abhyankar     /* read in my part of the matrix column indices  */
37234683f7a4SShri Abhyankar     nz     = procsnz[0];
37244683f7a4SShri Abhyankar     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
37254683f7a4SShri Abhyankar     mycols = ibuf;
37264683f7a4SShri Abhyankar     if (size == 1)  nz -= extra_rows;
37274683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
37284683f7a4SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
37294683f7a4SShri Abhyankar 
37304683f7a4SShri Abhyankar     /* read in every ones (except the last) and ship off */
37314683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
37324683f7a4SShri Abhyankar       nz   = procsnz[i];
37334683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
37344683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
37354683f7a4SShri Abhyankar     }
37364683f7a4SShri Abhyankar     /* read in the stuff for the last proc */
37374683f7a4SShri Abhyankar     if (size != 1) {
37384683f7a4SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
37394683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
37404683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
37414683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
37424683f7a4SShri Abhyankar     }
37434683f7a4SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
37444683f7a4SShri Abhyankar   } else {
37454683f7a4SShri Abhyankar     /* determine buffer space needed for message */
37464683f7a4SShri Abhyankar     nz = 0;
37474683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
37484683f7a4SShri Abhyankar       nz += locrowlens[i];
37494683f7a4SShri Abhyankar     }
37504683f7a4SShri Abhyankar     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
37514683f7a4SShri Abhyankar     mycols = ibuf;
37524683f7a4SShri Abhyankar     /* receive message of column indices*/
37534683f7a4SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
37544683f7a4SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
37554683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
37564683f7a4SShri Abhyankar   }
37574683f7a4SShri Abhyankar 
37584683f7a4SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
37594683f7a4SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
37604683f7a4SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
37614683f7a4SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
37624683f7a4SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
37634683f7a4SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
37644683f7a4SShri Abhyankar   rowcount = 0; nzcount = 0;
37654683f7a4SShri Abhyankar   for (i=0; i<mbs; i++) {
37664683f7a4SShri Abhyankar     dcount  = 0;
37674683f7a4SShri Abhyankar     odcount = 0;
37684683f7a4SShri Abhyankar     for (j=0; j<bs; j++) {
37694683f7a4SShri Abhyankar       kmax = locrowlens[rowcount];
37704683f7a4SShri Abhyankar       for (k=0; k<kmax; k++) {
37714683f7a4SShri Abhyankar         tmp = mycols[nzcount++]/bs;
37724683f7a4SShri Abhyankar         if (!mask[tmp]) {
37734683f7a4SShri Abhyankar           mask[tmp] = 1;
37744683f7a4SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
37754683f7a4SShri Abhyankar           else masked1[dcount++] = tmp;
37764683f7a4SShri Abhyankar         }
37774683f7a4SShri Abhyankar       }
37784683f7a4SShri Abhyankar       rowcount++;
37794683f7a4SShri Abhyankar     }
37804683f7a4SShri Abhyankar 
37814683f7a4SShri Abhyankar     dlens[i]  = dcount;
37824683f7a4SShri Abhyankar     odlens[i] = odcount;
37834683f7a4SShri Abhyankar 
37844683f7a4SShri Abhyankar     /* zero out the mask elements we set */
37854683f7a4SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
37864683f7a4SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
37874683f7a4SShri Abhyankar   }
37884683f7a4SShri Abhyankar 
37894683f7a4SShri Abhyankar 
37904683f7a4SShri Abhyankar   if (!sizesset) {
37914683f7a4SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
37924683f7a4SShri Abhyankar   }
37934683f7a4SShri Abhyankar   ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
37944683f7a4SShri Abhyankar 
37954683f7a4SShri Abhyankar   if (!rank) {
37964683f7a4SShri Abhyankar     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
37974683f7a4SShri Abhyankar     /* read in my part of the matrix numerical values  */
37984683f7a4SShri Abhyankar     nz = procsnz[0];
37994683f7a4SShri Abhyankar     vals = buf;
38004683f7a4SShri Abhyankar     mycols = ibuf;
38014683f7a4SShri Abhyankar     if (size == 1)  nz -= extra_rows;
38024683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
38034683f7a4SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
38044683f7a4SShri Abhyankar 
38054683f7a4SShri Abhyankar     /* insert into matrix */
38064683f7a4SShri Abhyankar     jj      = rstart*bs;
38074683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
38084683f7a4SShri Abhyankar       ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
38094683f7a4SShri Abhyankar       mycols += locrowlens[i];
38104683f7a4SShri Abhyankar       vals   += locrowlens[i];
38114683f7a4SShri Abhyankar       jj++;
38124683f7a4SShri Abhyankar     }
38134683f7a4SShri Abhyankar     /* read in other processors (except the last one) and ship out */
38144683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
38154683f7a4SShri Abhyankar       nz   = procsnz[i];
38164683f7a4SShri Abhyankar       vals = buf;
38174683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3818479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
38194683f7a4SShri Abhyankar     }
38204683f7a4SShri Abhyankar     /* the last proc */
38214683f7a4SShri Abhyankar     if (size != 1) {
38224683f7a4SShri Abhyankar       nz   = procsnz[i] - extra_rows;
38234683f7a4SShri Abhyankar       vals = buf;
38244683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
38254683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
3826479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
38274683f7a4SShri Abhyankar     }
38284683f7a4SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
38294683f7a4SShri Abhyankar   } else {
38304683f7a4SShri Abhyankar     /* receive numeric values */
38314683f7a4SShri Abhyankar     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
38324683f7a4SShri Abhyankar 
38334683f7a4SShri Abhyankar     /* receive message of values*/
38344683f7a4SShri Abhyankar     vals   = buf;
38354683f7a4SShri Abhyankar     mycols = ibuf;
3836479e424cSMichael Lange     ierr   = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
38374683f7a4SShri Abhyankar 
38384683f7a4SShri Abhyankar     /* insert into matrix */
38394683f7a4SShri Abhyankar     jj      = rstart*bs;
38404683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
38414683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
38424683f7a4SShri Abhyankar       mycols += locrowlens[i];
38434683f7a4SShri Abhyankar       vals   += locrowlens[i];
38444683f7a4SShri Abhyankar       jj++;
38454683f7a4SShri Abhyankar     }
38464683f7a4SShri Abhyankar   }
38474683f7a4SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
38484683f7a4SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
38494683f7a4SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
38504683f7a4SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
38514683f7a4SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
38524683f7a4SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
38534683f7a4SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
38544683f7a4SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
38554683f7a4SShri Abhyankar 
38564683f7a4SShri Abhyankar   PetscFunctionReturn(0);
38574683f7a4SShri Abhyankar }
38584683f7a4SShri Abhyankar 
38594683f7a4SShri Abhyankar #undef __FUNCT__
38604a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3861133cdb44SSatish Balay /*@
3862133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3863133cdb44SSatish Balay 
3864133cdb44SSatish Balay    Input Parameters:
3865133cdb44SSatish Balay .  mat  - the matrix
3866133cdb44SSatish Balay .  fact - factor
3867133cdb44SSatish Balay 
3868c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3869fee21e36SBarry Smith 
38708c890885SBarry Smith    Level: advanced
38718c890885SBarry Smith 
3872133cdb44SSatish Balay   Notes:
38738c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3874133cdb44SSatish Balay 
3875133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3876133cdb44SSatish Balay 
3877133cdb44SSatish Balay .seealso: MatSetOption()
3878133cdb44SSatish Balay @*/
38797087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3880133cdb44SSatish Balay {
38814ac538c5SBarry Smith   PetscErrorCode ierr;
38825bf65638SKris Buschelman 
38835bf65638SKris Buschelman   PetscFunctionBegin;
38844ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
38855bf65638SKris Buschelman   PetscFunctionReturn(0);
38865bf65638SKris Buschelman }
38875bf65638SKris Buschelman 
3888be1d678aSKris Buschelman EXTERN_C_BEGIN
38895bf65638SKris Buschelman #undef __FUNCT__
38905bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
38917087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
38925bf65638SKris Buschelman {
389325fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3894133cdb44SSatish Balay 
3895133cdb44SSatish Balay   PetscFunctionBegin;
3896133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
3897133cdb44SSatish Balay   baij->ht_fact = fact;
3898133cdb44SSatish Balay   PetscFunctionReturn(0);
3899133cdb44SSatish Balay }
3900be1d678aSKris Buschelman EXTERN_C_END
3901f2a5309cSSatish Balay 
39024a2ae208SSatish Balay #undef __FUNCT__
39034a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
39049230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3905f2a5309cSSatish Balay {
3906f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3907f2a5309cSSatish Balay   PetscFunctionBegin;
3908f2a5309cSSatish Balay   *Ad     = a->A;
3909f2a5309cSSatish Balay   *Ao     = a->B;
3910195d93cdSBarry Smith   *colmap = a->garray;
3911f2a5309cSSatish Balay   PetscFunctionReturn(0);
3912f2a5309cSSatish Balay }
391385535b8eSBarry Smith 
391485535b8eSBarry Smith /*
391585535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
391685535b8eSBarry Smith */
391785535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
391885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
391985535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
392085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
392185535b8eSBarry Smith #endif
392285535b8eSBarry Smith 
392385535b8eSBarry Smith #undef __FUNCT__
392485535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
392585535b8eSBarry Smith /*@C
392685535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
392785535b8eSBarry Smith 
392885535b8eSBarry Smith   Collective on Mat
392985535b8eSBarry Smith 
393085535b8eSBarry Smith   Input Parameters:
393185535b8eSBarry Smith + mat - the matrix
393285535b8eSBarry Smith . min - number of input rows
393385535b8eSBarry Smith . im - input rows
393485535b8eSBarry Smith . nin - number of input columns
393585535b8eSBarry Smith . in - input columns
393685535b8eSBarry Smith . v - numerical values input
393785535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
393885535b8eSBarry Smith 
393985535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
394085535b8eSBarry Smith 
394185535b8eSBarry Smith   Level: advanced
394285535b8eSBarry Smith 
394385535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
394485535b8eSBarry Smith @*/
394585535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
394685535b8eSBarry Smith {
394785535b8eSBarry Smith   /* convert input arguments to C version */
394885535b8eSBarry Smith   Mat             mat = *matin;
394985535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
395085535b8eSBarry Smith   InsertMode      addv = *addvin;
395185535b8eSBarry Smith 
395285535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
395385535b8eSBarry Smith   const MatScalar *value;
395485535b8eSBarry Smith   MatScalar       *barray=baij->barray;
3955ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
395685535b8eSBarry Smith   PetscErrorCode  ierr;
395785535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
395885535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3959d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
396085535b8eSBarry Smith 
396185535b8eSBarry Smith   PetscFunctionBegin;
396285535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
396385535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
396485535b8eSBarry Smith     mat->insertmode = addv;
396585535b8eSBarry Smith   }
396685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3967e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3968e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
396985535b8eSBarry Smith #endif
397085535b8eSBarry Smith   if (mat->assembled) {
397185535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
397285535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
397385535b8eSBarry Smith   }
397485535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
397585535b8eSBarry Smith 
397685535b8eSBarry Smith 
397785535b8eSBarry Smith   if (!barray) {
397885535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
397985535b8eSBarry Smith     baij->barray = barray;
398085535b8eSBarry Smith   }
398185535b8eSBarry Smith 
398285535b8eSBarry Smith   if (roworiented) {
398385535b8eSBarry Smith     stepval = (n-1)*bs;
398485535b8eSBarry Smith   } else {
398585535b8eSBarry Smith     stepval = (m-1)*bs;
398685535b8eSBarry Smith   }
398785535b8eSBarry Smith   for (i=0; i<m; i++) {
398885535b8eSBarry Smith     if (im[i] < 0) continue;
398985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3990e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
399185535b8eSBarry Smith #endif
399285535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
399385535b8eSBarry Smith       row = im[i] - rstart;
399485535b8eSBarry Smith       for (j=0; j<n; j++) {
399585535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
399685535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
399785535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
399885535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
399985535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
400085535b8eSBarry Smith         } else { /* Here a copy is required */
400185535b8eSBarry Smith           if (roworiented) {
400285535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
400385535b8eSBarry Smith           } else {
400485535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
400585535b8eSBarry Smith           }
400685535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
400785535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
400885535b8eSBarry Smith               *barray++  = *value++;
400985535b8eSBarry Smith             }
401085535b8eSBarry Smith           }
401185535b8eSBarry Smith           barray -=bs2;
401285535b8eSBarry Smith         }
401385535b8eSBarry Smith 
401485535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
401585535b8eSBarry Smith           col  = in[j] - cstart;
401697e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
401785535b8eSBarry Smith         }
401885535b8eSBarry Smith         else if (in[j] < 0) continue;
401985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
4020cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
402185535b8eSBarry Smith #endif
402285535b8eSBarry Smith         else {
402385535b8eSBarry Smith           if (mat->was_assembled) {
402485535b8eSBarry Smith             if (!baij->colmap) {
4025ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
402685535b8eSBarry Smith             }
402785535b8eSBarry Smith 
402885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
402985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
403085535b8eSBarry Smith             { PetscInt data;
403185535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4032e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
403385535b8eSBarry Smith             }
403485535b8eSBarry Smith #else
4035e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
403685535b8eSBarry Smith #endif
403785535b8eSBarry Smith #endif
403885535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
403985535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
404085535b8eSBarry Smith             col  = (col - 1)/bs;
404185535b8eSBarry Smith #else
404285535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
404385535b8eSBarry Smith #endif
404485535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4045ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
404685535b8eSBarry Smith               col =  in[j];
404785535b8eSBarry Smith             }
404885535b8eSBarry Smith           }
404985535b8eSBarry Smith           else col = in[j];
405097e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
405185535b8eSBarry Smith         }
405285535b8eSBarry Smith       }
405385535b8eSBarry Smith     } else {
405485535b8eSBarry Smith       if (!baij->donotstash) {
405585535b8eSBarry Smith         if (roworiented) {
405685535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
405785535b8eSBarry Smith         } else {
405885535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
405985535b8eSBarry Smith         }
406085535b8eSBarry Smith       }
406185535b8eSBarry Smith     }
406285535b8eSBarry Smith   }
406385535b8eSBarry Smith 
406485535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
406585535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
406685535b8eSBarry Smith   PetscFunctionReturn(0);
406785535b8eSBarry Smith }
4068dfb205c3SBarry Smith 
4069dfb205c3SBarry Smith #undef __FUNCT__
4070dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays"
4071dfb205c3SBarry Smith /*@
4072dfb205c3SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard
4073dfb205c3SBarry Smith          CSR format the local rows.
4074dfb205c3SBarry Smith 
4075dfb205c3SBarry Smith    Collective on MPI_Comm
4076dfb205c3SBarry Smith 
4077dfb205c3SBarry Smith    Input Parameters:
4078dfb205c3SBarry Smith +  comm - MPI communicator
4079dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
4080dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
4081dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
4082dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
4083dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
4084dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
4085dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
4086dfb205c3SBarry Smith .   i - row indices
4087dfb205c3SBarry Smith .   j - column indices
4088dfb205c3SBarry Smith -   a - matrix values
4089dfb205c3SBarry Smith 
4090dfb205c3SBarry Smith    Output Parameter:
4091dfb205c3SBarry Smith .   mat - the matrix
4092dfb205c3SBarry Smith 
4093dfb205c3SBarry Smith    Level: intermediate
4094dfb205c3SBarry Smith 
4095dfb205c3SBarry Smith    Notes:
4096dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
4097dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
4098dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
4099dfb205c3SBarry Smith 
4100dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
4101dfb205c3SBarry Smith 
4102dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
4103dfb205c3SBarry Smith 
4104dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
410569b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
4106dfb205c3SBarry Smith @*/
41077087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
4108dfb205c3SBarry Smith {
4109dfb205c3SBarry Smith   PetscErrorCode ierr;
4110dfb205c3SBarry Smith 
4111dfb205c3SBarry Smith 
4112dfb205c3SBarry Smith   PetscFunctionBegin;
4113f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
4114dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
4115dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
4116dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
4117dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
4118dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
4119dfb205c3SBarry Smith   PetscFunctionReturn(0);
4120dfb205c3SBarry Smith }
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