xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision c7b600bfa1e09390635288e28b2255a907e0e6b5)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
614e879edeSHong Zhang   PetscScalar       *va, *vv;
624e879edeSHong Zhang   Vec                vB, vA;
634e879edeSHong Zhang   const PetscScalar *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
66*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
76*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
100*c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v)
101*c7b600bfSPierre Jolivet {
102*c7b600bfSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
103*c7b600bfSPierre Jolivet   Vec          vB, vA;
104*c7b600bfSPierre Jolivet 
105*c7b600bfSPierre Jolivet   PetscFunctionBegin;
106*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
107*c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->A, vA));
108*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
109*c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->B, vB));
110*c7b600bfSPierre Jolivet   PetscCall(VecAXPY(vA, 1.0, vB));
111*c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vB));
112*c7b600bfSPierre Jolivet   PetscCall(VecCopy(vA, v));
113*c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vA));
114*c7b600bfSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
115*c7b600bfSPierre Jolivet }
116*c7b600bfSPierre Jolivet 
11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
118d71ae5a4SJacob Faibussowitsch {
1197fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1207fc3c18eSBarry Smith 
1217fc3c18eSBarry Smith   PetscFunctionBegin;
1229566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1257fc3c18eSBarry Smith }
1267fc3c18eSBarry Smith 
12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
128d71ae5a4SJacob Faibussowitsch {
1297fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1307fc3c18eSBarry Smith 
1317fc3c18eSBarry Smith   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1357fc3c18eSBarry Smith }
1367fc3c18eSBarry Smith 
137537820f0SBarry Smith /*
138537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
13957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
140e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
14157b952d6SSatish Balay    length of colmap equals the global matrix length.
14257b952d6SSatish Balay */
143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
144d71ae5a4SJacob Faibussowitsch {
14557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
14657b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
147d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
14857b952d6SSatish Balay 
149d64ed03dSBarry Smith   PetscFunctionBegin;
150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
151eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
152c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
15348e59246SSatish Balay #else
1549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
155928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
15648e59246SSatish Balay #endif
1573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15857b952d6SSatish Balay }
15957b952d6SSatish Balay 
160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
161a8f51744SPierre Jolivet   do { \
16280c1aa95SSatish Balay     brow = row / bs; \
1638e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1648e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1659371c9d4SSatish Balay     rmax = aimax[brow]; \
1669371c9d4SSatish Balay     nrow = ailen[brow]; \
16780c1aa95SSatish Balay     bcol = col / bs; \
1689371c9d4SSatish Balay     ridx = row % bs; \
1699371c9d4SSatish Balay     cidx = col % bs; \
1709371c9d4SSatish Balay     low  = 0; \
1719371c9d4SSatish Balay     high = nrow; \
172ab26458aSBarry Smith     while (high - low > 3) { \
173ab26458aSBarry Smith       t = (low + high) / 2; \
174ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
175ab26458aSBarry Smith       else low = t; \
176ab26458aSBarry Smith     } \
177ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
17880c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
17980c1aa95SSatish Balay       if (rp[_i] == bcol) { \
18080c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
181eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
182eada6651SSatish Balay         else *bap = value; \
183ac7a638eSSatish Balay         goto a_noinsert; \
18480c1aa95SSatish Balay       } \
18580c1aa95SSatish Balay     } \
18689280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1875f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
18980c1aa95SSatish Balay     N = nrow++ - 1; \
19080c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1919566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1929566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
19480c1aa95SSatish Balay     rp[_i]                          = bcol; \
19580c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
196ac7a638eSSatish Balay   a_noinsert:; \
19780c1aa95SSatish Balay     ailen[brow] = nrow; \
198a8f51744SPierre Jolivet   } while (0)
19957b952d6SSatish Balay 
200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
201a8f51744SPierre Jolivet   do { \
202ac7a638eSSatish Balay     brow = row / bs; \
2038e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
2048e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
2059371c9d4SSatish Balay     rmax = bimax[brow]; \
2069371c9d4SSatish Balay     nrow = bilen[brow]; \
207ac7a638eSSatish Balay     bcol = col / bs; \
2089371c9d4SSatish Balay     ridx = row % bs; \
2099371c9d4SSatish Balay     cidx = col % bs; \
2109371c9d4SSatish Balay     low  = 0; \
2119371c9d4SSatish Balay     high = nrow; \
212ac7a638eSSatish Balay     while (high - low > 3) { \
213ac7a638eSSatish Balay       t = (low + high) / 2; \
214ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
215ac7a638eSSatish Balay       else low = t; \
216ac7a638eSSatish Balay     } \
217ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
218ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
219ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
220ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
221ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
222ac7a638eSSatish Balay         else *bap = value; \
223ac7a638eSSatish Balay         goto b_noinsert; \
224ac7a638eSSatish Balay       } \
225ac7a638eSSatish Balay     } \
22689280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2275f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
228fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
229ac7a638eSSatish Balay     N = nrow++ - 1; \
230ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2319566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
234ac7a638eSSatish Balay     rp[_i]                          = bcol; \
235ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
236ac7a638eSSatish Balay   b_noinsert:; \
237ac7a638eSSatish Balay     bilen[brow] = nrow; \
238a8f51744SPierre Jolivet   } while (0)
239ac7a638eSSatish Balay 
240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
241d71ae5a4SJacob Faibussowitsch {
24257b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
24393fea6afSBarry Smith   MatScalar    value;
244ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
245b24ad042SBarry Smith   PetscInt     i, j, row, col;
246d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
247d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
248d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
24957b952d6SSatish Balay 
250eada6651SSatish Balay   /* Some Variables required in the macro */
25180c1aa95SSatish Balay   Mat          A     = baij->A;
25280c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
253b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2543eda8832SBarry Smith   MatScalar   *aa = a->a;
255ac7a638eSSatish Balay 
256ac7a638eSSatish Balay   Mat          B     = baij->B;
257ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
258b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2593eda8832SBarry Smith   MatScalar   *ba = b->a;
260ac7a638eSSatish Balay 
261b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
262b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2633eda8832SBarry Smith   MatScalar *ap, *bap;
26480c1aa95SSatish Balay 
265d64ed03dSBarry Smith   PetscFunctionBegin;
26657b952d6SSatish Balay   for (i = 0; i < m; i++) {
2675ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2685f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
26957b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
27057b952d6SSatish Balay       row = im[i] - rstart_orig;
27157b952d6SSatish Balay       for (j = 0; j < n; j++) {
27257b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
27357b952d6SSatish Balay           col = in[j] - cstart_orig;
274db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
275db4deed7SKarl Rupp           else value = v[i + j * m];
276d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
277f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
278f7d195e4SLawrence Mitchell           continue;
279f7d195e4SLawrence Mitchell         } else {
280f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
28157b952d6SSatish Balay           if (mat->was_assembled) {
28248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
284eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
285bba1ac68SSatish Balay             col = col - 1;
28648e59246SSatish Balay #else
287bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
28848e59246SSatish Balay #endif
289f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2909566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2918295de27SSatish Balay               col = in[j];
2929bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2939bf004c3SSatish Balay               B     = baij->B;
2949bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2959371c9d4SSatish Balay               bimax = b->imax;
2969371c9d4SSatish Balay               bi    = b->i;
2979371c9d4SSatish Balay               bilen = b->ilen;
2989371c9d4SSatish Balay               bj    = b->j;
2999bf004c3SSatish Balay               ba    = b->a;
300f7d195e4SLawrence Mitchell             } else {
301f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
302f7d195e4SLawrence Mitchell               col += in[j] % bs;
303f7d195e4SLawrence Mitchell             }
3048295de27SSatish Balay           } else col = in[j];
305db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
306db4deed7SKarl Rupp           else value = v[i + j * m];
307d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3089566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
30957b952d6SSatish Balay         }
31057b952d6SSatish Balay       }
311d64ed03dSBarry Smith     } else {
3125f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
31390f02eecSBarry Smith       if (!baij->donotstash) {
3145080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
315ff2fd236SBarry Smith         if (roworiented) {
3169566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
317ff2fd236SBarry Smith         } else {
3189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
31957b952d6SSatish Balay         }
32057b952d6SSatish Balay       }
32157b952d6SSatish Balay     }
32290f02eecSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32457b952d6SSatish Balay }
32557b952d6SSatish Balay 
326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
327d71ae5a4SJacob Faibussowitsch {
328880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3298ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
330880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3318ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
332880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
333880c6e6aSBarry Smith   const PetscScalar *value       = v;
334880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
335880c6e6aSBarry Smith 
336880c6e6aSBarry Smith   PetscFunctionBegin;
337880c6e6aSBarry Smith   rp    = aj + ai[row];
338880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
339880c6e6aSBarry Smith   rmax  = imax[row];
340880c6e6aSBarry Smith   nrow  = ailen[row];
3418ab52850SBarry Smith   value = v;
3428ab52850SBarry Smith   low   = 0;
3438ab52850SBarry Smith   high  = nrow;
344880c6e6aSBarry Smith   while (high - low > 7) {
345880c6e6aSBarry Smith     t = (low + high) / 2;
346880c6e6aSBarry Smith     if (rp[t] > col) high = t;
347880c6e6aSBarry Smith     else low = t;
348880c6e6aSBarry Smith   }
349880c6e6aSBarry Smith   for (i = low; i < high; i++) {
350880c6e6aSBarry Smith     if (rp[i] > col) break;
351880c6e6aSBarry Smith     if (rp[i] == col) {
352880c6e6aSBarry Smith       bap = ap + bs2 * i;
353880c6e6aSBarry Smith       if (roworiented) {
354880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
356ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
357880c6e6aSBarry Smith           }
358880c6e6aSBarry Smith         } else {
3598ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
360ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
361880c6e6aSBarry Smith           }
362880c6e6aSBarry Smith         }
363880c6e6aSBarry Smith       } else {
364880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3658ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
366ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
367880c6e6aSBarry Smith             bap += bs;
368880c6e6aSBarry Smith           }
369880c6e6aSBarry Smith         } else {
3708ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
371ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
372880c6e6aSBarry Smith             bap += bs;
373880c6e6aSBarry Smith           }
374880c6e6aSBarry Smith         }
375880c6e6aSBarry Smith       }
376880c6e6aSBarry Smith       goto noinsert2;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   }
379880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3805f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
381880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3829371c9d4SSatish Balay   N = nrow++ - 1;
3839371c9d4SSatish Balay   high++;
384880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3859566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3869566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
387880c6e6aSBarry Smith   rp[i] = col;
388880c6e6aSBarry Smith   bap   = ap + bs2 * i;
389880c6e6aSBarry Smith   if (roworiented) {
3908ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
391ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
392880c6e6aSBarry Smith     }
393880c6e6aSBarry Smith   } else {
3948ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
395ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
396880c6e6aSBarry Smith     }
397880c6e6aSBarry Smith   }
398880c6e6aSBarry Smith noinsert2:;
399880c6e6aSBarry Smith   ailen[row] = nrow;
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401880c6e6aSBarry Smith }
402880c6e6aSBarry Smith 
4038ab52850SBarry Smith /*
4048ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
4058ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
4068ab52850SBarry Smith */
40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
408d71ae5a4SJacob Faibussowitsch {
409ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
410dd6ea824SBarry Smith   const PetscScalar *value;
411f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
412ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
413899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
414899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
415d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
416ab26458aSBarry Smith 
417b16ae2b1SBarry Smith   PetscFunctionBegin;
41830793edcSSatish Balay   if (!barray) {
4199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
42082502324SSatish Balay     baij->barray = barray;
42130793edcSSatish Balay   }
42230793edcSSatish Balay 
42326fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
42426fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
42526fbe8dcSKarl Rupp 
426ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4275ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4286bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
429ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
430ab26458aSBarry Smith       row = im[i] - rstart;
431ab26458aSBarry Smith       for (j = 0; j < n; j++) {
43215b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
43315b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
434f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
43515b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
436f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
43715b57d14SSatish Balay         } else { /* Here a copy is required */
438ab26458aSBarry Smith           if (roworiented) {
43953ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
440ab26458aSBarry Smith           } else {
44153ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
442abef11f7SSatish Balay           }
44353ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
44426fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
44553ef36baSBarry Smith             barray += bs;
44647513183SBarry Smith           }
44730793edcSSatish Balay           barray -= bs2;
44815b57d14SSatish Balay         }
449abef11f7SSatish Balay 
450abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
451abef11f7SSatish Balay           col = in[j] - cstart;
4529566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
453f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
454f7d195e4SLawrence Mitchell           continue;
455f7d195e4SLawrence Mitchell         } else {
456f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
457ab26458aSBarry Smith           if (mat->was_assembled) {
45848a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
459a5eb4965SSatish Balay 
4602515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
461aa482453SBarry Smith   #if defined(PETSC_USE_CTABLE)
4629371c9d4SSatish Balay             {
4639371c9d4SSatish Balay               PetscInt data;
464eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
46508401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
466fa46199cSSatish Balay             }
46748e59246SSatish Balay   #else
46808401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
469a5eb4965SSatish Balay   #endif
47048e59246SSatish Balay #endif
471aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
472eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
473fa46199cSSatish Balay             col = (col - 1) / bs;
47448e59246SSatish Balay #else
475a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1) / bs;
47648e59246SSatish Balay #endif
477f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4789566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
479ab26458aSBarry Smith               col = in[j];
4805f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
481db4deed7SKarl Rupp           } else col = in[j];
4829566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
483ab26458aSBarry Smith         }
484ab26458aSBarry Smith       }
485d64ed03dSBarry Smith     } else {
4865f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
487ab26458aSBarry Smith       if (!baij->donotstash) {
488ff2fd236SBarry Smith         if (roworiented) {
4899566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
490ff2fd236SBarry Smith         } else {
4919566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
492ff2fd236SBarry Smith         }
493abef11f7SSatish Balay       }
494ab26458aSBarry Smith     }
495ab26458aSBarry Smith   }
4963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
497ab26458aSBarry Smith }
4986fa18ffdSBarry Smith 
4990bdbc534SSatish Balay #define HASH_KEY             0.6180339887
500b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
501b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
502b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
50366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
504d71ae5a4SJacob Faibussowitsch {
5050bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
506ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
507b24ad042SBarry Smith   PetscInt     i, j, row, col;
508d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
509d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
510d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
511329f5518SBarry Smith   PetscReal    tmp;
5123eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
513b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5140bdbc534SSatish Balay 
5150bdbc534SSatish Balay   PetscFunctionBegin;
5160bdbc534SSatish Balay   for (i = 0; i < m; i++) {
51776bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5185f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5195f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
52076bd3646SJed Brown     }
5210bdbc534SSatish Balay     row = im[i];
522c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5230bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5240bdbc534SSatish Balay         col = in[j];
525db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
526db4deed7SKarl Rupp         else value = v[i + j * m];
527b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
528c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
529c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5300bdbc534SSatish Balay 
531c2760754SSatish Balay         idx = h1;
53276bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
533187ce0cbSSatish Balay           insert_ct++;
534187ce0cbSSatish Balay           total_ct++;
535187ce0cbSSatish Balay           if (HT[idx] != key) {
536fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
537187ce0cbSSatish Balay             if (idx == size) {
538fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5395f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
540187ce0cbSSatish Balay             }
541187ce0cbSSatish Balay           }
54276bd3646SJed Brown         } else if (HT[idx] != key) {
543fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
544c2760754SSatish Balay           if (idx == size) {
545fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5465f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
547c2760754SSatish Balay           }
548c2760754SSatish Balay         }
549c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
550c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
551c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5520bdbc534SSatish Balay       }
55326fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
554ff2fd236SBarry Smith       if (roworiented) {
5559566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
556ff2fd236SBarry Smith       } else {
5579566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5580bdbc534SSatish Balay       }
5590bdbc534SSatish Balay     }
5600bdbc534SSatish Balay   }
56176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
562abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
563abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
56476bd3646SJed Brown   }
5653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5660bdbc534SSatish Balay }
5670bdbc534SSatish Balay 
56866976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
569d71ae5a4SJacob Faibussowitsch {
5700bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
571ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
572b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
573899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
574d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
575b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
576329f5518SBarry Smith   PetscReal          tmp;
5773eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
578dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
579b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5800bdbc534SSatish Balay 
581d0a41580SSatish Balay   PetscFunctionBegin;
58226fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
58326fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
58426fbe8dcSKarl Rupp 
5850bdbc534SSatish Balay   for (i = 0; i < m; i++) {
58676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5875f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5885f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
58976bd3646SJed Brown     }
5900bdbc534SSatish Balay     row = im[i];
591ab715e2cSSatish Balay     v_t = v + i * nbs2;
592c2760754SSatish Balay     if (row >= rstart && row < rend) {
5930bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5940bdbc534SSatish Balay         col = in[j];
5950bdbc534SSatish Balay 
5960bdbc534SSatish Balay         /* Look up into the Hash Table */
597c2760754SSatish Balay         key = row * Nbs + col + 1;
598c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5990bdbc534SSatish Balay 
600c2760754SSatish Balay         idx = h1;
60176bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
602187ce0cbSSatish Balay           total_ct++;
603187ce0cbSSatish Balay           insert_ct++;
604187ce0cbSSatish Balay           if (HT[idx] != key) {
605fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
606187ce0cbSSatish Balay             if (idx == size) {
607fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
6085f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
609187ce0cbSSatish Balay             }
610187ce0cbSSatish Balay           }
61176bd3646SJed Brown         } else if (HT[idx] != key) {
612fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
613c2760754SSatish Balay           if (idx == size) {
614fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
6155f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
616c2760754SSatish Balay           }
617c2760754SSatish Balay         }
618c2760754SSatish Balay         baij_a = HD[idx];
6190bdbc534SSatish Balay         if (roworiented) {
620c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
621187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
622187ce0cbSSatish Balay           value = v_t;
623187ce0cbSSatish Balay           v_t += bs;
624fef45726SSatish Balay           if (addv == ADD_VALUES) {
625c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
626ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
627b4cc0f5aSSatish Balay             }
628fef45726SSatish Balay           } else {
629c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
630ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
631fef45726SSatish Balay             }
632fef45726SSatish Balay           }
6330bdbc534SSatish Balay         } else {
6340bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
635fef45726SSatish Balay           if (addv == ADD_VALUES) {
636b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
637ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
638fef45726SSatish Balay             }
639fef45726SSatish Balay           } else {
640fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
641ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
642b4cc0f5aSSatish Balay             }
6430bdbc534SSatish Balay           }
6440bdbc534SSatish Balay         }
6450bdbc534SSatish Balay       }
6460bdbc534SSatish Balay     } else {
6470bdbc534SSatish Balay       if (!baij->donotstash) {
6480bdbc534SSatish Balay         if (roworiented) {
6499566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6500bdbc534SSatish Balay         } else {
6519566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6520bdbc534SSatish Balay         }
6530bdbc534SSatish Balay       }
6540bdbc534SSatish Balay     }
6550bdbc534SSatish Balay   }
65676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
657abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
658abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
65976bd3646SJed Brown   }
6603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6610bdbc534SSatish Balay }
662133cdb44SSatish Balay 
66366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
664d71ae5a4SJacob Faibussowitsch {
665d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
666d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
667d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
668d6de1c52SSatish Balay 
669133cdb44SSatish Balay   PetscFunctionBegin;
670d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
67154c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
67254c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
673d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
674d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
675d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
67654c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
67754c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
678d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
679d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6809566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
681d64ed03dSBarry Smith         } else {
68248a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
683aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
684eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
685fa46199cSSatish Balay           data--;
68648e59246SSatish Balay #else
68748e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
68848e59246SSatish Balay #endif
68948e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
690d9d09a02SSatish Balay           else {
69148e59246SSatish Balay             col = data + idxn[j] % bs;
6929566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
693d6de1c52SSatish Balay           }
694d6de1c52SSatish Balay         }
695d6de1c52SSatish Balay       }
696f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
697d6de1c52SSatish Balay   }
6983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
699d6de1c52SSatish Balay }
700d6de1c52SSatish Balay 
70166976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
702d71ae5a4SJacob Faibussowitsch {
703d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
704d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
705d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
706329f5518SBarry Smith   PetscReal    sum = 0.0;
7073eda8832SBarry Smith   MatScalar   *v;
708d6de1c52SSatish Balay 
709d64ed03dSBarry Smith   PetscFunctionBegin;
710d6de1c52SSatish Balay   if (baij->size == 1) {
7119566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
712d6de1c52SSatish Balay   } else {
713d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
714d6de1c52SSatish Balay       v  = amat->a;
7158a62d963SHong Zhang       nz = amat->nz * bs2;
7168a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7179371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7189371c9d4SSatish Balay         v++;
719d6de1c52SSatish Balay       }
720d6de1c52SSatish Balay       v  = bmat->a;
7218a62d963SHong Zhang       nz = bmat->nz * bs2;
7228a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7239371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7249371c9d4SSatish Balay         v++;
725d6de1c52SSatish Balay       }
7261c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7278f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7288a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7298a62d963SHong Zhang       PetscReal *tmp, *tmp2;
730899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7319566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7329566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7339371c9d4SSatish Balay       v  = amat->a;
7349371c9d4SSatish Balay       jj = amat->j;
7358a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7368a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7378a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7388a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7399371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7409371c9d4SSatish Balay             v++;
7418a62d963SHong Zhang           }
7428a62d963SHong Zhang         }
7438a62d963SHong Zhang         jj++;
7448a62d963SHong Zhang       }
7459371c9d4SSatish Balay       v  = bmat->a;
7469371c9d4SSatish Balay       jj = bmat->j;
7478a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7488a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7498a62d963SHong Zhang           col = bs * garray[*jj] + j;
7508a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7519371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7529371c9d4SSatish Balay             v++;
7538a62d963SHong Zhang           }
7548a62d963SHong Zhang         }
7558a62d963SHong Zhang         jj++;
7568a62d963SHong Zhang       }
7571c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7588a62d963SHong Zhang       *nrm = 0.0;
759d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7608a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7618a62d963SHong Zhang       }
7629566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7639566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7648a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
765577dd1f9SKris Buschelman       PetscReal *sums;
7669566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7678a62d963SHong Zhang       sum = 0.0;
7688a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7698a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7708a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7718a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7728a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7738a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7748a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7759371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7769371c9d4SSatish Balay               v++;
7778a62d963SHong Zhang             }
7788a62d963SHong Zhang           }
7798a62d963SHong Zhang         }
7808a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7818a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7828a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7838a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7848a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7859371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7869371c9d4SSatish Balay               v++;
7878a62d963SHong Zhang             }
7888a62d963SHong Zhang           }
7898a62d963SHong Zhang         }
7908a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7918a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7928a62d963SHong Zhang         }
7938a62d963SHong Zhang       }
7941c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7959566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
796ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
797d64ed03dSBarry Smith   }
7983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
799d6de1c52SSatish Balay }
80057b952d6SSatish Balay 
801fef45726SSatish Balay /*
802fef45726SSatish Balay   Creates the hash table, and sets the table
803fef45726SSatish Balay   This table is created only once.
804fef45726SSatish Balay   If new entried need to be added to the matrix
805fef45726SSatish Balay   then the hash table has to be destroyed and
806fef45726SSatish Balay   recreated.
807fef45726SSatish Balay */
80866976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
809d71ae5a4SJacob Faibussowitsch {
810596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
811596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
812596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
813b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
814fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
815899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
816b24ad042SBarry Smith   PetscInt    *HT, key;
8173eda8832SBarry Smith   MatScalar  **HD;
818329f5518SBarry Smith   PetscReal    tmp;
8196cf91177SBarry Smith #if defined(PETSC_USE_INFO)
820b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8214a15367fSSatish Balay #endif
822fef45726SSatish Balay 
823d64ed03dSBarry Smith   PetscFunctionBegin;
8243ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
825fef45726SSatish Balay 
826fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
827fca92195SBarry Smith   ht_size       = baij->ht_size;
8280bdbc534SSatish Balay 
829fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8309566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
831b9e4cc15SSatish Balay   HD = baij->hd;
832a07cd24cSSatish Balay   HT = baij->ht;
833b9e4cc15SSatish Balay 
834596b8d2eSBarry Smith   /* Loop Over A */
8350bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
836596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8370bdbc534SSatish Balay       row = i + rstart;
8380bdbc534SSatish Balay       col = aj[j] + cstart;
839596b8d2eSBarry Smith 
840187ce0cbSSatish Balay       key = row * Nbs + col + 1;
841fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
842fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
843fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
844fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
845fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
846596b8d2eSBarry Smith           break;
8476cf91177SBarry Smith #if defined(PETSC_USE_INFO)
848187ce0cbSSatish Balay         } else {
849187ce0cbSSatish Balay           ct++;
850187ce0cbSSatish Balay #endif
851596b8d2eSBarry Smith         }
852187ce0cbSSatish Balay       }
8536cf91177SBarry Smith #if defined(PETSC_USE_INFO)
854187ce0cbSSatish Balay       if (k > max) max = k;
855187ce0cbSSatish Balay #endif
856596b8d2eSBarry Smith     }
857596b8d2eSBarry Smith   }
858596b8d2eSBarry Smith   /* Loop Over B */
8590bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
860596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8610bdbc534SSatish Balay       row = i + rstart;
8620bdbc534SSatish Balay       col = garray[bj[j]];
863187ce0cbSSatish Balay       key = row * Nbs + col + 1;
864fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
865fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
866fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
867fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
868fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
869596b8d2eSBarry Smith           break;
8706cf91177SBarry Smith #if defined(PETSC_USE_INFO)
871187ce0cbSSatish Balay         } else {
872187ce0cbSSatish Balay           ct++;
873187ce0cbSSatish Balay #endif
874596b8d2eSBarry Smith         }
875187ce0cbSSatish Balay       }
8766cf91177SBarry Smith #if defined(PETSC_USE_INFO)
877187ce0cbSSatish Balay       if (k > max) max = k;
878187ce0cbSSatish Balay #endif
879596b8d2eSBarry Smith     }
880596b8d2eSBarry Smith   }
881596b8d2eSBarry Smith 
882596b8d2eSBarry Smith   /* Print Summary */
8836cf91177SBarry Smith #if defined(PETSC_USE_INFO)
884fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
88526fbe8dcSKarl Rupp     if (HT[i]) j++;
886c38d4ed2SBarry Smith   }
8879566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
888187ce0cbSSatish Balay #endif
8893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
890596b8d2eSBarry Smith }
89157b952d6SSatish Balay 
89266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
893d71ae5a4SJacob Faibussowitsch {
894bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
895b24ad042SBarry Smith   PetscInt     nstash, reallocs;
896bbb85fb3SSatish Balay 
897bbb85fb3SSatish Balay   PetscFunctionBegin;
8983ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
899bbb85fb3SSatish Balay 
9009566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
9019566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
9029566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
9039566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
9049566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
9059566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
9063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
907bbb85fb3SSatish Balay }
908bbb85fb3SSatish Balay 
90966976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
910d71ae5a4SJacob Faibussowitsch {
911bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
91291c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
913b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
914e44c0bd4SBarry Smith   PetscInt    *row, *col;
915ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9163eda8832SBarry Smith   MatScalar   *val;
917b24ad042SBarry Smith   PetscMPIInt  n;
918bbb85fb3SSatish Balay 
919bbb85fb3SSatish Balay   PetscFunctionBegin;
9205fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9214cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
922a2d1c673SSatish Balay     while (1) {
9239566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
924a2d1c673SSatish Balay       if (!flg) break;
925a2d1c673SSatish Balay 
926bbb85fb3SSatish Balay       for (i = 0; i < n;) {
927bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92826fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
93026fbe8dcSKarl Rupp         }
931bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
932bbb85fb3SSatish Balay         else ncols = n - i;
933bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9349566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
935bbb85fb3SSatish Balay         i = j;
936bbb85fb3SSatish Balay       }
937bbb85fb3SSatish Balay     }
9389566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
939a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9405e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
941a2d1c673SSatish Balay        restore the original flags */
942a2d1c673SSatish Balay     r1 = baij->roworiented;
943a2d1c673SSatish Balay     r2 = a->roworiented;
94491c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
94526fbe8dcSKarl Rupp 
9467c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9477c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
948f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
949a2d1c673SSatish Balay     while (1) {
9509566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
951a2d1c673SSatish Balay       if (!flg) break;
952a2d1c673SSatish Balay 
953a2d1c673SSatish Balay       for (i = 0; i < n;) {
954a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
95526fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
95626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
95726fbe8dcSKarl Rupp         }
958a2d1c673SSatish Balay         if (j < n) ncols = j - i;
959a2d1c673SSatish Balay         else ncols = n - i;
9609566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
961a2d1c673SSatish Balay         i = j;
962a2d1c673SSatish Balay       }
963a2d1c673SSatish Balay     }
9649566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
96526fbe8dcSKarl Rupp 
966a2d1c673SSatish Balay     baij->roworiented                           = r1;
967a2d1c673SSatish Balay     a->roworiented                              = r2;
9685e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
969bbb85fb3SSatish Balay   }
970bbb85fb3SSatish Balay 
9719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
973bbb85fb3SSatish Balay 
974bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9756aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
976bbb85fb3SSatish Balay   /*
977bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
978bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
979bbb85fb3SSatish Balay   */
980bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9815f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
98248a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
983bbb85fb3SSatish Balay   }
984bbb85fb3SSatish Balay 
98548a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
988bbb85fb3SSatish Balay 
9896cf91177SBarry Smith #if defined(PETSC_USE_INFO)
990bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9919566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
99226fbe8dcSKarl Rupp 
993bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
994bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
995bbb85fb3SSatish Balay   }
996bbb85fb3SSatish Balay #endif
997bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9989566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99926fbe8dcSKarl Rupp 
1000bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1001bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1002bbb85fb3SSatish Balay   }
1003bbb85fb3SSatish Balay 
10049566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
100526fbe8dcSKarl Rupp 
1006f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
10074f9cfa9eSBarry Smith 
10084f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
1009f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
1010e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
10111c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1012e56f5c9eSBarry Smith   }
10133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1014bbb85fb3SSatish Balay }
101557b952d6SSatish Balay 
10167da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10179804daf3SBarry Smith #include <petscdraw.h>
1018d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1019d71ae5a4SJacob Faibussowitsch {
102057b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10217da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1022d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1023ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1024b0a32e0cSBarry Smith   PetscViewer       sviewer;
1025f3ef73ceSBarry Smith   PetscViewerFormat format;
102657b952d6SSatish Balay 
1027d64ed03dSBarry Smith   PetscFunctionBegin;
10289566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
103032077d6dSBarry Smith   if (iascii) {
10319566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1032456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10334e220ebcSLois Curfman McInnes       MatInfo info;
10349566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10359566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10369566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10379371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10389371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10399566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10409566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10419566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10429566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10439566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10449566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10459566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10469566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10473ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1048fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10499566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10503ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
105104929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10523ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
105357b952d6SSatish Balay     }
105457b952d6SSatish Balay   }
105557b952d6SSatish Balay 
10560f5bd95cSBarry Smith   if (isdraw) {
1057b0a32e0cSBarry Smith     PetscDraw draw;
1058ace3abfcSBarry Smith     PetscBool isnull;
10599566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10609566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10613ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
106257b952d6SSatish Balay   }
106357b952d6SSatish Balay 
10647da1fb6eSBarry Smith   {
106557b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
106657b952d6SSatish Balay     Mat          A;
106757b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1068d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10693eda8832SBarry Smith     MatScalar   *a;
10703e219373SBarry Smith     const char  *matname;
107157b952d6SSatish Balay 
1072f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1073f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10749566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1075dd400576SPatrick Sanan     if (rank == 0) {
10769566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1077d64ed03dSBarry Smith     } else {
10789566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
107957b952d6SSatish Balay     }
10809566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10819566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10829566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
108357b952d6SSatish Balay 
108457b952d6SSatish Balay     /* copy over the A part */
108557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10869371c9d4SSatish Balay     ai   = Aloc->i;
10879371c9d4SSatish Balay     aj   = Aloc->j;
10889371c9d4SSatish Balay     a    = Aloc->a;
10899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
109057b952d6SSatish Balay 
109157b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1092899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
109326fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
109457b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1095899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
109657b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10979566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10989371c9d4SSatish Balay           col++;
10999371c9d4SSatish Balay           a += bs;
110057b952d6SSatish Balay         }
110157b952d6SSatish Balay       }
110257b952d6SSatish Balay     }
110357b952d6SSatish Balay     /* copy over the B part */
110457b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
11059371c9d4SSatish Balay     ai   = Aloc->i;
11069371c9d4SSatish Balay     aj   = Aloc->j;
11079371c9d4SSatish Balay     a    = Aloc->a;
110857b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1109899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
111026fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
111157b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
111257b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
111357b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11149566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11159371c9d4SSatish Balay           col++;
11169371c9d4SSatish Balay           a += bs;
111757b952d6SSatish Balay         }
111857b952d6SSatish Balay       }
111957b952d6SSatish Balay     }
11209566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11219566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11229566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
112355843e3eSBarry Smith     /*
112455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1125b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
112655843e3eSBarry Smith     */
11279566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
112823a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1129dd400576SPatrick Sanan     if (rank == 0) {
1130f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1131f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
113257b952d6SSatish Balay     }
11339566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11349566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
113557b952d6SSatish Balay   }
11363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
113757b952d6SSatish Balay }
113857b952d6SSatish Balay 
1139618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1141d71ae5a4SJacob Faibussowitsch {
1142b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1143b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1144b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1145b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
114617a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
114717a3732bSBarry Smith   PetscInt64      nz, hnz;
1148b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1149b51a4376SLisandro Dalcin   PetscScalar    *matvals;
115017a3732bSBarry Smith   PetscMPIInt     rank;
1151660746e0SBarry Smith 
1152660746e0SBarry Smith   PetscFunctionBegin;
11539566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1154b51a4376SLisandro Dalcin 
1155b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1156b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1157b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1158b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1159b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1160b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1161b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1162b51a4376SLisandro Dalcin 
1163b51a4376SLisandro Dalcin   /* write matrix header */
1164660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11659371c9d4SSatish Balay   header[1] = M;
11669371c9d4SSatish Balay   header[2] = N;
116717a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
116817a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
116917a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11709566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1171660746e0SBarry Smith 
1172b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1174b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11759371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11769566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11779566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1178660746e0SBarry Smith 
1179b51a4376SLisandro Dalcin   /* fill in and store column indices */
11809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1181b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1182b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1183b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1184b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11859371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1186660746e0SBarry Smith       }
1187b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11889371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1189b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11909371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1191660746e0SBarry Smith     }
1192660746e0SBarry Smith   }
119317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
11949566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11959566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1196660746e0SBarry Smith 
1197b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1199b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1200b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1201b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1202b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
12039371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1204660746e0SBarry Smith       }
1205b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
12069371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1207b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
12089371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1209660746e0SBarry Smith     }
1210b51a4376SLisandro Dalcin   }
12119566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12129566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1213660746e0SBarry Smith 
1214b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12159566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1217660746e0SBarry Smith }
1218660746e0SBarry Smith 
1219d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1220d71ae5a4SJacob Faibussowitsch {
1221ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
122257b952d6SSatish Balay 
1223d64ed03dSBarry Smith   PetscFunctionBegin;
12249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12259566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12269566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1228660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12299566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12301baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
123257b952d6SSatish Balay }
123357b952d6SSatish Balay 
123466976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1235d71ae5a4SJacob Faibussowitsch {
1236cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1237b24ad042SBarry Smith   PetscInt     nt;
1238cee3aa6bSSatish Balay 
1239d64ed03dSBarry Smith   PetscFunctionBegin;
12409566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12415f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12429566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1243da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12449566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12459566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12469566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12479566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1249cee3aa6bSSatish Balay }
1250cee3aa6bSSatish Balay 
125166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1252d71ae5a4SJacob Faibussowitsch {
1253cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1254d64ed03dSBarry Smith 
1255d64ed03dSBarry Smith   PetscFunctionBegin;
12569566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12579566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12589566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12599566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1261cee3aa6bSSatish Balay }
1262cee3aa6bSSatish Balay 
126366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1264d71ae5a4SJacob Faibussowitsch {
1265cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1266cee3aa6bSSatish Balay 
1267d64ed03dSBarry Smith   PetscFunctionBegin;
1268cee3aa6bSSatish Balay   /* do nondiagonal part */
12699566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1270cee3aa6bSSatish Balay   /* do local part */
12719566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1272e4a140f6SJunchao Zhang   /* add partial results together */
12739566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12749566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1276cee3aa6bSSatish Balay }
1277cee3aa6bSSatish Balay 
127866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1279d71ae5a4SJacob Faibussowitsch {
1280cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1281cee3aa6bSSatish Balay 
1282d64ed03dSBarry Smith   PetscFunctionBegin;
1283cee3aa6bSSatish Balay   /* do nondiagonal part */
12849566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1285cee3aa6bSSatish Balay   /* do local part */
12869566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1287e4a140f6SJunchao Zhang   /* add partial results together */
12889566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12899566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1291cee3aa6bSSatish Balay }
1292cee3aa6bSSatish Balay 
1293cee3aa6bSSatish Balay /*
1294cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1295cee3aa6bSSatish Balay    diagonal block
1296cee3aa6bSSatish Balay */
129766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1298d71ae5a4SJacob Faibussowitsch {
1299d64ed03dSBarry Smith   PetscFunctionBegin;
13005f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
13019566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
13023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1303cee3aa6bSSatish Balay }
1304cee3aa6bSSatish Balay 
130566976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1306d71ae5a4SJacob Faibussowitsch {
1307cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1308d64ed03dSBarry Smith 
1309d64ed03dSBarry Smith   PetscFunctionBegin;
13109566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
13119566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1313cee3aa6bSSatish Balay }
1314026e39d0SSatish Balay 
1315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1316d71ae5a4SJacob Faibussowitsch {
1317acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
131887828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1319d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1320d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1321899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1322acdf5bf4SSatish Balay 
1323d64ed03dSBarry Smith   PetscFunctionBegin;
13245f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13255f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1326acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1327acdf5bf4SSatish Balay 
1328acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1329acdf5bf4SSatish Balay     /*
1330acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1331acdf5bf4SSatish Balay     */
1332acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1333b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1334bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1335acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
133626fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1337acdf5bf4SSatish Balay     }
13389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1339acdf5bf4SSatish Balay   }
1340d9d09a02SSatish Balay   lrow = row - brstart;
1341acdf5bf4SSatish Balay 
13429371c9d4SSatish Balay   pvA = &vworkA;
13439371c9d4SSatish Balay   pcA = &cworkA;
13449371c9d4SSatish Balay   pvB = &vworkB;
13459371c9d4SSatish Balay   pcB = &cworkB;
13469371c9d4SSatish Balay   if (!v) {
13479371c9d4SSatish Balay     pvA = NULL;
13489371c9d4SSatish Balay     pvB = NULL;
13499371c9d4SSatish Balay   }
13509371c9d4SSatish Balay   if (!idx) {
13519371c9d4SSatish Balay     pcA = NULL;
13529371c9d4SSatish Balay     if (!v) pcB = NULL;
13539371c9d4SSatish Balay   }
13549566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13559566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1356acdf5bf4SSatish Balay   nztot = nzA + nzB;
1357acdf5bf4SSatish Balay 
1358acdf5bf4SSatish Balay   cmap = mat->garray;
1359acdf5bf4SSatish Balay   if (v || idx) {
1360acdf5bf4SSatish Balay     if (nztot) {
1361acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1362b24ad042SBarry Smith       PetscInt imark = -1;
1363acdf5bf4SSatish Balay       if (v) {
1364acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1365acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1366d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1367acdf5bf4SSatish Balay           else break;
1368acdf5bf4SSatish Balay         }
1369acdf5bf4SSatish Balay         imark = i;
1370acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1371acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1372acdf5bf4SSatish Balay       }
1373acdf5bf4SSatish Balay       if (idx) {
1374acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1375acdf5bf4SSatish Balay         if (imark > -1) {
1376ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1377acdf5bf4SSatish Balay         } else {
1378acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
137926fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1380acdf5bf4SSatish Balay             else break;
1381acdf5bf4SSatish Balay           }
1382acdf5bf4SSatish Balay           imark = i;
1383acdf5bf4SSatish Balay         }
1384d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1385d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1386acdf5bf4SSatish Balay       }
1387d64ed03dSBarry Smith     } else {
1388f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1389f4259b30SLisandro Dalcin       if (v) *v = NULL;
1390d212a18eSSatish Balay     }
1391acdf5bf4SSatish Balay   }
1392acdf5bf4SSatish Balay   *nz = nztot;
13939566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13949566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1396acdf5bf4SSatish Balay }
1397acdf5bf4SSatish Balay 
1398d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1399d71ae5a4SJacob Faibussowitsch {
1400acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1401d64ed03dSBarry Smith 
1402d64ed03dSBarry Smith   PetscFunctionBegin;
14035f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1404acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1406acdf5bf4SSatish Balay }
1407acdf5bf4SSatish Balay 
140866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1409d71ae5a4SJacob Faibussowitsch {
141058667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1411d64ed03dSBarry Smith 
1412d64ed03dSBarry Smith   PetscFunctionBegin;
14139566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14149566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
141658667388SSatish Balay }
14170ac07820SSatish Balay 
141866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1419d71ae5a4SJacob Faibussowitsch {
14204e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14214e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14223966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14230ac07820SSatish Balay 
1424d64ed03dSBarry Smith   PetscFunctionBegin;
1425d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142626fbe8dcSKarl Rupp 
14279566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
142826fbe8dcSKarl Rupp 
14299371c9d4SSatish Balay   isend[0] = info->nz_used;
14309371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14319371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14329371c9d4SSatish Balay   isend[3] = info->memory;
14339371c9d4SSatish Balay   isend[4] = info->mallocs;
143426fbe8dcSKarl Rupp 
14359566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
143626fbe8dcSKarl Rupp 
14379371c9d4SSatish Balay   isend[0] += info->nz_used;
14389371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14399371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14409371c9d4SSatish Balay   isend[3] += info->memory;
14419371c9d4SSatish Balay   isend[4] += info->mallocs;
144226fbe8dcSKarl Rupp 
14430ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14444e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14454e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14464e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14474e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14484e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14490ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14501c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
145126fbe8dcSKarl Rupp 
14524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14570ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14581c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
145926fbe8dcSKarl Rupp 
14604e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14614e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14624e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14634e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14644e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
146598921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14664e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14674e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14684e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14700ac07820SSatish Balay }
14710ac07820SSatish Balay 
147266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1473d71ae5a4SJacob Faibussowitsch {
147458667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
147558667388SSatish Balay 
1476d64ed03dSBarry Smith   PetscFunctionBegin;
147712c028f9SKris Buschelman   switch (op) {
1478512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147912c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
148028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1481a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
148212c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
148343674050SBarry Smith     MatCheckPreallocated(A, 1);
14849566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14859566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148612c028f9SKris Buschelman     break;
148712c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
148843674050SBarry Smith     MatCheckPreallocated(A, 1);
14894e0d8c25SBarry Smith     a->roworiented = flg;
149026fbe8dcSKarl Rupp 
14919566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14929566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
149312c028f9SKris Buschelman     break;
14948c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1495d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1496d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1497d71ae5a4SJacob Faibussowitsch     break;
1498d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1499d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1500d71ae5a4SJacob Faibussowitsch     break;
150112c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15024e0d8c25SBarry Smith     a->ht_flag = flg;
1503abf3b562SBarry Smith     a->ht_fact = 1.39;
150412c028f9SKris Buschelman     break;
150577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
150677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15072188ac68SBarry Smith   case MAT_HERMITIAN:
1508c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15092188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1510b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1511b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1512b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
151377e54ba9SKris Buschelman     break;
1514d71ae5a4SJacob Faibussowitsch   default:
1515d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1516d64ed03dSBarry Smith   }
15173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151858667388SSatish Balay }
151958667388SSatish Balay 
152066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1521d71ae5a4SJacob Faibussowitsch {
15220ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15230ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15240ac07820SSatish Balay   Mat          B;
1525d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1526d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15273eda8832SBarry Smith   MatScalar   *a;
15280ac07820SSatish Balay 
1529d64ed03dSBarry Smith   PetscFunctionBegin;
15307fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1531cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15329566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15339566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15349566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15352e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15369566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1537fc4dec0aSBarry Smith   } else {
1538fc4dec0aSBarry Smith     B = *matout;
1539fc4dec0aSBarry Smith   }
15400ac07820SSatish Balay 
15410ac07820SSatish Balay   /* copy over the A part */
15420ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15439371c9d4SSatish Balay   ai   = Aloc->i;
15449371c9d4SSatish Balay   aj   = Aloc->j;
15459371c9d4SSatish Balay   a    = Aloc->a;
15469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15470ac07820SSatish Balay 
15480ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1549899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
155026fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15510ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1552899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15530ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15549566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
155526fbe8dcSKarl Rupp 
15569371c9d4SSatish Balay         col++;
15579371c9d4SSatish Balay         a += bs;
15580ac07820SSatish Balay       }
15590ac07820SSatish Balay     }
15600ac07820SSatish Balay   }
15610ac07820SSatish Balay   /* copy over the B part */
15620ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15639371c9d4SSatish Balay   ai   = Aloc->i;
15649371c9d4SSatish Balay   aj   = Aloc->j;
15659371c9d4SSatish Balay   a    = Aloc->a;
15660ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1567899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
156826fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15690ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15700ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15710ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15729566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
157326fbe8dcSKarl Rupp         col++;
157426fbe8dcSKarl Rupp         a += bs;
15750ac07820SSatish Balay       }
15760ac07820SSatish Balay     }
15770ac07820SSatish Balay   }
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15810ac07820SSatish Balay 
1582cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
158348a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15850ac07820SSatish Balay }
15860e95ebc0SSatish Balay 
158766976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1588d71ae5a4SJacob Faibussowitsch {
158936c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
159036c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1591b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15920e95ebc0SSatish Balay 
1593d64ed03dSBarry Smith   PetscFunctionBegin;
15949566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
159536c4a09eSSatish Balay   if (rr) {
15969566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15975f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
159836c4a09eSSatish Balay     /* Overlap communication with computation. */
15999566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
160036c4a09eSSatish Balay   }
16010e95ebc0SSatish Balay   if (ll) {
16029566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
16035f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1604dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16050e95ebc0SSatish Balay   }
160636c4a09eSSatish Balay   /* scale  the diagonal block */
1607dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
160836c4a09eSSatish Balay 
160936c4a09eSSatish Balay   if (rr) {
161036c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
16119566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1612dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
161336c4a09eSSatish Balay   }
16143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16150e95ebc0SSatish Balay }
16160e95ebc0SSatish Balay 
161766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1618d71ae5a4SJacob Faibussowitsch {
16190ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
162065a92638SMatthew G. Knepley   PetscInt    *lrows;
16216e520ac8SStefano Zampini   PetscInt     r, len;
162294342113SStefano Zampini   PetscBool    cong;
16230ac07820SSatish Balay 
1624d64ed03dSBarry Smith   PetscFunctionBegin;
16256e520ac8SStefano Zampini   /* get locally owned rows */
16269566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1627dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
162897b48c8fSBarry Smith   if (x && b) {
162965a92638SMatthew G. Knepley     const PetscScalar *xx;
163065a92638SMatthew G. Knepley     PetscScalar       *bb;
163165a92638SMatthew G. Knepley 
16329566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16339566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
163465a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16359566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
163797b48c8fSBarry Smith   }
163897b48c8fSBarry Smith 
16390ac07820SSatish Balay   /* actually zap the local rows */
164072dacd9aSBarry Smith   /*
164172dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1642a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
164372dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
164472dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
164572dacd9aSBarry Smith 
164672dacd9aSBarry Smith   */
16479c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16489566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16499566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
165094342113SStefano Zampini   if ((diag != 0.0) && cong) {
16519566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1652f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16539566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
165400045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
165565a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
165665a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16579566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1658a07cd24cSSatish Balay     }
16599566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16609566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16619c957beeSSatish Balay   } else {
16629566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1663a07cd24cSSatish Balay   }
16649566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16654f9cfa9eSBarry Smith 
16664f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1667f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1668e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16691c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1670e56f5c9eSBarry Smith   }
16713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16720ac07820SSatish Balay }
167372dacd9aSBarry Smith 
167466976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1675d71ae5a4SJacob Faibussowitsch {
16766f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1677131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1678131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16796f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16806f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16816f0a72daSMatthew G. Knepley   PetscSF            sf;
16826f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16836f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16846f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16856f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16866f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16876f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16886f0a72daSMatthew G. Knepley 
16896f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16906f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16926f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16946f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16956f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16965f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16975ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16989566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16995ba17502SJed Brown     }
17006f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
17016f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
17026f0a72daSMatthew G. Knepley   }
17039566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
17049566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
17056f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17069566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17079566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17089566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
17096f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17109371c9d4SSatish Balay   for (r = 0; r < n; ++r)
17119371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
17126f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17139566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
17144cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
17159566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17169566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17179566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17186f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17209566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17219566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17236f0a72daSMatthew G. Knepley   if (x) {
17249566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17259566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17269566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17279566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17286f0a72daSMatthew G. Knepley   }
17299566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17304cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17316f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17326f0a72daSMatthew G. Knepley     row   = lrows[i];
17336f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1734f4f49eeaSPierre Jolivet     aa    = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs);
17356f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17366f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17376f0a72daSMatthew G. Knepley       aa += bs;
17386f0a72daSMatthew G. Knepley     }
17396f0a72daSMatthew G. Knepley   }
17406f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17416f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17426f0a72daSMatthew G. Knepley     row = i / bs;
17436f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17446f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17456f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17466f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1747f4f49eeaSPierre Jolivet           aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k;
174889ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17496f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17506f0a72daSMatthew G. Knepley         }
17516f0a72daSMatthew G. Knepley       }
17526f0a72daSMatthew G. Knepley     }
17536f0a72daSMatthew G. Knepley   }
17546f0a72daSMatthew G. Knepley   if (x) {
17559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17569566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17576f0a72daSMatthew G. Knepley   }
17589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17599566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17609566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17614f9cfa9eSBarry Smith 
17624f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1763f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17644f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17651c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17664f9cfa9eSBarry Smith   }
17673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17686f0a72daSMatthew G. Knepley }
17696f0a72daSMatthew G. Knepley 
177066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1771d71ae5a4SJacob Faibussowitsch {
1772bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1773d64ed03dSBarry Smith 
1774d64ed03dSBarry Smith   PetscFunctionBegin;
17759566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1777bb5a7306SBarry Smith }
1778bb5a7306SBarry Smith 
17796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17800ac07820SSatish Balay 
178166976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1782d71ae5a4SJacob Faibussowitsch {
17837fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17847fc3c18eSBarry Smith   Mat          a, b, c, d;
1785ace3abfcSBarry Smith   PetscBool    flg;
17867fc3c18eSBarry Smith 
17877fc3c18eSBarry Smith   PetscFunctionBegin;
17889371c9d4SSatish Balay   a = matA->A;
17899371c9d4SSatish Balay   b = matA->B;
17909371c9d4SSatish Balay   c = matB->A;
17919371c9d4SSatish Balay   d = matB->B;
17927fc3c18eSBarry Smith 
17939566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
179448a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17951c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17977fc3c18eSBarry Smith }
17987fc3c18eSBarry Smith 
179966976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1800d71ae5a4SJacob Faibussowitsch {
18013c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
18023c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
18033c896bc6SHong Zhang 
18043c896bc6SHong Zhang   PetscFunctionBegin;
18053c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18063c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18079566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
18083c896bc6SHong Zhang   } else {
18099566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
18109566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
18113c896bc6SHong Zhang   }
18129566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
18133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18143c896bc6SHong Zhang }
1815273d9f13SBarry Smith 
1816d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1817d71ae5a4SJacob Faibussowitsch {
1818001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18194de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18204de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18214de5dceeSHong Zhang 
18224de5dceeSHong Zhang   PetscFunctionBegin;
18239566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18254de5dceeSHong Zhang }
18264de5dceeSHong Zhang 
182766976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1828d71ae5a4SJacob Faibussowitsch {
18294fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18304fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18314fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1832b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18334fe895cdSHong Zhang 
18344fe895cdSHong Zhang   PetscFunctionBegin;
18354fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18364fe895cdSHong Zhang     PetscScalar alpha = a;
18374fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18384fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18399566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1840792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18414fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18424fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18439566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1844792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18459566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1846ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18479566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18484fe895cdSHong Zhang   } else {
18494de5dceeSHong Zhang     Mat       B;
18504de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18519566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18539566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18549566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18559566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18569566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18579566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18589566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18599566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18609566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18614de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18629566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18639566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18649566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18659566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18664fe895cdSHong Zhang   }
18673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18684fe895cdSHong Zhang }
18694fe895cdSHong Zhang 
187066976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1871d71ae5a4SJacob Faibussowitsch {
18725f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18735f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18742726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18752726fb6dSPierre Jolivet 
18769566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18779566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18785f80ce2aSJacob Faibussowitsch   }
18793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18802726fb6dSPierre Jolivet }
18812726fb6dSPierre Jolivet 
188266976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1883d71ae5a4SJacob Faibussowitsch {
188499cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188599cafbc1SBarry Smith 
188699cafbc1SBarry Smith   PetscFunctionBegin;
18879566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18889566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189099cafbc1SBarry Smith }
189199cafbc1SBarry Smith 
189266976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1893d71ae5a4SJacob Faibussowitsch {
189499cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
189599cafbc1SBarry Smith 
189699cafbc1SBarry Smith   PetscFunctionBegin;
18979566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18989566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
190099cafbc1SBarry Smith }
190199cafbc1SBarry Smith 
190266976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1903d71ae5a4SJacob Faibussowitsch {
19044aa3045dSJed Brown   IS       iscol_local;
19054aa3045dSJed Brown   PetscInt csize;
19064aa3045dSJed Brown 
19074aa3045dSJed Brown   PetscFunctionBegin;
19089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1909b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
19109566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
19115f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1912b79d0421SJed Brown   } else {
19139566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1914b79d0421SJed Brown   }
1915fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1916b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19179566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19189566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1919b79d0421SJed Brown   }
19203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19214aa3045dSJed Brown }
192217df9f7cSHong Zhang 
192382094794SBarry Smith /*
192482094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
192582094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19267dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19278f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
192882094794SBarry Smith */
1929fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1930d71ae5a4SJacob Faibussowitsch {
193182094794SBarry Smith   PetscMPIInt  rank, size;
193282094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1933c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
193429dcf524SDmitry Karpeev   Mat          M, Mreuse;
193582094794SBarry Smith   MatScalar   *vwork, *aa;
1936ce94432eSBarry Smith   MPI_Comm     comm;
193729dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
193882094794SBarry Smith   Mat_SeqBAIJ *aij;
193982094794SBarry Smith 
194082094794SBarry Smith   PetscFunctionBegin;
19419566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
194429dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
194529dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19469566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1947864bd19bSPierre Jolivet   if (isrow == iscol) {
1948864bd19bSPierre Jolivet     iscol_new = isrow_new;
1949864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1950864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
195182094794SBarry Smith 
195282094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19539566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19545f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1955fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
195682094794SBarry Smith   } else {
1957fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
195882094794SBarry Smith   }
19599566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19609566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
196182094794SBarry Smith   /*
196282094794SBarry Smith       m - number of local rows
196382094794SBarry Smith       n - number of columns (same on all processors)
196482094794SBarry Smith       rstart - first row in new global matrix generated
196582094794SBarry Smith   */
19669566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19679566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
196882094794SBarry Smith   m = m / bs;
196982094794SBarry Smith   n = n / bs;
197082094794SBarry Smith 
197182094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
197282094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
197382094794SBarry Smith     ii  = aij->i;
197482094794SBarry Smith     jj  = aij->j;
197582094794SBarry Smith 
197682094794SBarry Smith     /*
197782094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
197882094794SBarry Smith         portions of the matrix in order to do correct preallocation
197982094794SBarry Smith     */
198082094794SBarry Smith 
198182094794SBarry Smith     /* first get start and end of "diagonal" columns */
198282094794SBarry Smith     if (csize == PETSC_DECIDE) {
19839566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
198482094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
198582094794SBarry Smith         nlocal = m;
198682094794SBarry Smith       } else {
198782094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
198882094794SBarry Smith       }
198982094794SBarry Smith     } else {
199082094794SBarry Smith       nlocal = csize / bs;
199182094794SBarry Smith     }
19929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
199382094794SBarry Smith     rstart = rend - nlocal;
1994aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
199582094794SBarry Smith 
199682094794SBarry Smith     /* next, compute all the lengths */
19979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
199882094794SBarry Smith     for (i = 0; i < m; i++) {
199982094794SBarry Smith       jend = ii[i + 1] - ii[i];
200082094794SBarry Smith       olen = 0;
200182094794SBarry Smith       dlen = 0;
200282094794SBarry Smith       for (j = 0; j < jend; j++) {
200382094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
200482094794SBarry Smith         else dlen++;
200582094794SBarry Smith         jj++;
200682094794SBarry Smith       }
200782094794SBarry Smith       olens[i] = olen;
200882094794SBarry Smith       dlens[i] = dlen;
200982094794SBarry Smith     }
20109566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
20119566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
2012fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
20139566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20149566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20159566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
201682094794SBarry Smith   } else {
201782094794SBarry Smith     PetscInt ml, nl;
201882094794SBarry Smith 
201982094794SBarry Smith     M = *newmat;
20209566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20215f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20229566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
202382094794SBarry Smith     /*
202482094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
202582094794SBarry Smith        rather than the slower MatSetValues().
202682094794SBarry Smith     */
202782094794SBarry Smith     M->was_assembled = PETSC_TRUE;
202882094794SBarry Smith     M->assembled     = PETSC_FALSE;
202982094794SBarry Smith   }
20309566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20319566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
203282094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
203382094794SBarry Smith   ii  = aij->i;
203482094794SBarry Smith   jj  = aij->j;
203582094794SBarry Smith   aa  = aij->a;
203682094794SBarry Smith   for (i = 0; i < m; i++) {
203782094794SBarry Smith     row   = rstart / bs + i;
203882094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20399371c9d4SSatish Balay     cwork = jj;
20408e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20419371c9d4SSatish Balay     vwork = aa;
20428e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20439566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
204482094794SBarry Smith   }
204582094794SBarry Smith 
20469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20479566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
204882094794SBarry Smith   *newmat = M;
204982094794SBarry Smith 
205082094794SBarry Smith   /* save submatrix used in processor for next request */
205182094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20529566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20539566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
205482094794SBarry Smith   }
20553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
205682094794SBarry Smith }
205782094794SBarry Smith 
205866976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2059d71ae5a4SJacob Faibussowitsch {
206082094794SBarry Smith   MPI_Comm        comm, pcomm;
2061a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
206282094794SBarry Smith   const PetscInt *rows;
2063dbf0e21dSBarry Smith   PetscMPIInt     size;
2064a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
206582094794SBarry Smith 
206682094794SBarry Smith   PetscFunctionBegin;
20679566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
206882094794SBarry Smith   /* make a collective version of 'rowp' */
20699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
207082094794SBarry Smith   if (pcomm == comm) {
207182094794SBarry Smith     crowp = rowp;
207282094794SBarry Smith   } else {
20739566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20749566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20759566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20769566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
207782094794SBarry Smith   }
20789566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2079a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20809566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2082dbf0e21dSBarry Smith   if (size == 1) {
208382094794SBarry Smith     lcolp = colp;
208482094794SBarry Smith   } else {
20859566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
208682094794SBarry Smith   }
20879566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
208875f6568bSJed Brown   /* now we just get the submatrix */
20899566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2090fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2091a0a83eb5SRémi Lacroix   /* clean up */
209248a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
209348a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
209582094794SBarry Smith }
209682094794SBarry Smith 
209766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2098d71ae5a4SJacob Faibussowitsch {
20998c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
21008c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
21018c7482ecSBarry Smith 
21028c7482ecSBarry Smith   PetscFunctionBegin;
210326fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
210426fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
21053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21068c7482ecSBarry Smith }
21078c7482ecSBarry Smith 
210866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2109d71ae5a4SJacob Faibussowitsch {
2110f6d58c54SBarry Smith   Mat          B;
2111f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2112f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2113f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2114f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2115f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2116f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2117f6d58c54SBarry Smith 
2118f6d58c54SBarry Smith   PetscFunctionBegin;
21199566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2121f6d58c54SBarry Smith 
21222ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2124ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2126f6d58c54SBarry Smith   displs = recvcounts + size;
2127f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2128f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2129f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2130f6d58c54SBarry Smith   }
21319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21322ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21339566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21349566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21359566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2137f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2138f6d58c54SBarry Smith 
21392ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2140f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2141f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2142f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2143f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2144f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2145f6d58c54SBarry Smith   cnt        = 0;
2146f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2147f6d58c54SBarry Smith     /* put in lower diagonal portion */
2148f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2149f6d58c54SBarry Smith     while (m > 0) {
2150f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2151f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2152f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2153f6d58c54SBarry Smith       m--;
2154f6d58c54SBarry Smith     }
2155f6d58c54SBarry Smith 
2156f6d58c54SBarry Smith     /* put in diagonal portion */
2157ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2158f6d58c54SBarry Smith 
2159f6d58c54SBarry Smith     /* put in upper diagonal portion */
2160ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2161f6d58c54SBarry Smith   }
21625f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2163f6d58c54SBarry Smith 
21642ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2165f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2166f6d58c54SBarry Smith     recvcounts[i] = 0;
2167ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2168f6d58c54SBarry Smith   }
2169f6d58c54SBarry Smith   displs[0] = 0;
2170ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21725804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2173f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21749566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2175f6d58c54SBarry Smith   /* set the b->i indices */
2176f6d58c54SBarry Smith   b->i[0] = 0;
2177ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21789566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21819566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2182f6d58c54SBarry Smith 
2183b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2184f6d58c54SBarry Smith   *newmat = B;
21853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2186f6d58c54SBarry Smith }
2187f6d58c54SBarry Smith 
218866976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2189d71ae5a4SJacob Faibussowitsch {
2190b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2191f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2192b1a666ecSBarry Smith 
2193b1a666ecSBarry Smith   PetscFunctionBegin;
2194b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21959566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21963ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2197b1a666ecSBarry Smith   }
2198b1a666ecSBarry Smith 
219948a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
22004e980039SJed Brown 
2201b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2202b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22039566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2204b1a666ecSBarry Smith       its--;
2205b1a666ecSBarry Smith     }
2206b1a666ecSBarry Smith 
2207b1a666ecSBarry Smith     while (its--) {
22089566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22099566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2210b1a666ecSBarry Smith 
2211b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22129566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22139566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2214b1a666ecSBarry Smith 
2215b1a666ecSBarry Smith       /* local sweep */
22169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2217b1a666ecSBarry Smith     }
2218b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2219b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22209566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2221b1a666ecSBarry Smith       its--;
2222b1a666ecSBarry Smith     }
2223b1a666ecSBarry Smith     while (its--) {
22249566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22259566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2226b1a666ecSBarry Smith 
2227b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22289566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22299566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2230b1a666ecSBarry Smith 
2231b1a666ecSBarry Smith       /* local sweep */
22329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2233b1a666ecSBarry Smith     }
2234b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2235b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22369566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2237b1a666ecSBarry Smith       its--;
2238b1a666ecSBarry Smith     }
2239b1a666ecSBarry Smith     while (its--) {
22409566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22419566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2242b1a666ecSBarry Smith 
2243b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22449566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22459566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2246b1a666ecSBarry Smith 
2247b1a666ecSBarry Smith       /* local sweep */
22489566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2249b1a666ecSBarry Smith     }
2250ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2251b1a666ecSBarry Smith 
22529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2254b1a666ecSBarry Smith }
2255b1a666ecSBarry Smith 
225666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2257d71ae5a4SJacob Faibussowitsch {
225847f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2259a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
226047f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
226147f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
226247f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
226347f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
226447f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
226547f7623dSRémi Lacroix   PetscReal   *work;
226647f7623dSRémi Lacroix 
226747f7623dSRémi Lacroix   PetscFunctionBegin;
22689566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2270857cbf51SRichard Tran Mills   if (type == NORM_2) {
227147f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
227247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227447f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
227547f7623dSRémi Lacroix           a_val++;
227647f7623dSRémi Lacroix         }
227747f7623dSRémi Lacroix       }
227847f7623dSRémi Lacroix     }
227947f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
228047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228247f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
228347f7623dSRémi Lacroix           b_val++;
228447f7623dSRémi Lacroix         }
228547f7623dSRémi Lacroix       }
228647f7623dSRémi Lacroix     }
2287857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
228847f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229147f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
229247f7623dSRémi Lacroix           a_val++;
229347f7623dSRémi Lacroix         }
229447f7623dSRémi Lacroix       }
229547f7623dSRémi Lacroix     }
229647f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229947f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
230047f7623dSRémi Lacroix           b_val++;
230147f7623dSRémi Lacroix         }
230247f7623dSRémi Lacroix       }
230347f7623dSRémi Lacroix     }
2304857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
230547f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
230647f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230747f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230847f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
230947f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
231047f7623dSRémi Lacroix           a_val++;
231147f7623dSRémi Lacroix         }
231247f7623dSRémi Lacroix       }
231347f7623dSRémi Lacroix     }
231447f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
231547f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
231647f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
231747f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
231847f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
231947f7623dSRémi Lacroix           b_val++;
232047f7623dSRémi Lacroix         }
232147f7623dSRémi Lacroix       }
232247f7623dSRémi Lacroix     }
2323857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2324a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2325a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2326a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2327857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2328a873a8cdSSam Reynolds           a_val++;
2329a873a8cdSSam Reynolds         }
2330a873a8cdSSam Reynolds       }
2331a873a8cdSSam Reynolds     }
2332a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2333a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2334a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2335857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2336a873a8cdSSam Reynolds           b_val++;
2337a873a8cdSSam Reynolds         }
2338a873a8cdSSam Reynolds       }
2339a873a8cdSSam Reynolds     }
2340857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2341857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2342857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2343857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2344857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2345857cbf51SRichard Tran Mills           a_val++;
2346857cbf51SRichard Tran Mills         }
2347857cbf51SRichard Tran Mills       }
2348857cbf51SRichard Tran Mills     }
2349857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2350857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2351857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2352857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2353857cbf51SRichard Tran Mills           b_val++;
2354857cbf51SRichard Tran Mills         }
2355857cbf51SRichard Tran Mills       }
2356857cbf51SRichard Tran Mills     }
2357857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2358857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23591c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
236047f7623dSRémi Lacroix   } else {
23611c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
236247f7623dSRémi Lacroix   }
23639566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2364857cbf51SRichard Tran Mills   if (type == NORM_2) {
2365a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2366857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2367a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
236847f7623dSRémi Lacroix   }
23693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
237047f7623dSRémi Lacroix }
237147f7623dSRémi Lacroix 
237266976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2373d71ae5a4SJacob Faibussowitsch {
2374bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2375bbead8a2SBarry Smith 
2376bbead8a2SBarry Smith   PetscFunctionBegin;
23779566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23787b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23797b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23807b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2382bbead8a2SBarry Smith }
2383bbead8a2SBarry Smith 
238466976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2385d71ae5a4SJacob Faibussowitsch {
23867d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23876f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23887d68702bSBarry Smith 
23897d68702bSBarry Smith   PetscFunctionBegin;
23906f33a894SBarry Smith   if (!Y->preallocated) {
23919566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23926f33a894SBarry Smith   } else if (!aij->nz) {
2393b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23949566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2395b83222d8SBarry Smith     aij->nonew = nonew;
23967d68702bSBarry Smith   }
23979566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23997d68702bSBarry Smith }
24008c7482ecSBarry Smith 
240166976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2402d71ae5a4SJacob Faibussowitsch {
24033b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
24043b49f96aSBarry Smith 
24053b49f96aSBarry Smith   PetscFunctionBegin;
24065f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
24079566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
24083b49f96aSBarry Smith   if (d) {
24093b49f96aSBarry Smith     PetscInt rstart;
24109566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
24113b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
24123b49f96aSBarry Smith   }
24133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24143b49f96aSBarry Smith }
24153b49f96aSBarry Smith 
241666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2417d71ae5a4SJacob Faibussowitsch {
2418a5b7ff6bSBarry Smith   PetscFunctionBegin;
2419a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2421a5b7ff6bSBarry Smith }
2422a5b7ff6bSBarry Smith 
242317ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
242417ea310bSPierre Jolivet {
242517ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
242617ea310bSPierre Jolivet 
242717ea310bSPierre Jolivet   PetscFunctionBegin;
242817ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
242917ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
243017ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
243117ea310bSPierre Jolivet }
243217ea310bSPierre Jolivet 
24333964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2434cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2435cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2436cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
243797304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24387c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24397c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2440f4259b30SLisandro Dalcin                                        NULL,
2441f4259b30SLisandro Dalcin                                        NULL,
2442f4259b30SLisandro Dalcin                                        NULL,
2443f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2444f4259b30SLisandro Dalcin                                        NULL,
2445f4259b30SLisandro Dalcin                                        NULL,
2446b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
244897304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24497fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2450cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2451cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2452cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
245397304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2454cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2455cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2456cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2457d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2458f4259b30SLisandro Dalcin                                        NULL,
2459f4259b30SLisandro Dalcin                                        NULL,
2460f4259b30SLisandro Dalcin                                        NULL,
2461f4259b30SLisandro Dalcin                                        NULL,
246226cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2463f4259b30SLisandro Dalcin                                        NULL,
2464f4259b30SLisandro Dalcin                                        NULL,
2465a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2466f4259b30SLisandro Dalcin                                        NULL,
2467d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2468f4259b30SLisandro Dalcin                                        NULL,
2469f4259b30SLisandro Dalcin                                        NULL,
2470f4259b30SLisandro Dalcin                                        NULL,
2471f4259b30SLisandro Dalcin                                        NULL,
2472d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24737dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2474cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2475cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24763c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2477f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2478cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24797d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2480f4259b30SLisandro Dalcin                                        NULL,
24816f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2482f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
2484f4259b30SLisandro Dalcin                                        NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        NULL,
248793dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2488f4259b30SLisandro Dalcin                                        NULL,
2489cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
249082094794SBarry Smith                                        MatPermute_MPIBAIJ,
2491cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24927dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2493f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2494f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2508f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2509f4259b30SLisandro Dalcin                                        NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
25165bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2517f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        NULL,
2530f4259b30SLisandro Dalcin                                        NULL,
2531f4259b30SLisandro Dalcin                                        NULL,
2532f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                        NULL,
25352726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        /*104*/ NULL,
253899cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25398c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2540f4259b30SLisandro Dalcin                                        NULL,
2541f4259b30SLisandro Dalcin                                        NULL,
2542f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2543f4259b30SLisandro Dalcin                                        NULL,
2544f4259b30SLisandro Dalcin                                        NULL,
2545f4259b30SLisandro Dalcin                                        NULL,
25463b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2547d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2548f4259b30SLisandro Dalcin                                        NULL,
25494683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2550f4259b30SLisandro Dalcin                                        NULL,
2551f4259b30SLisandro Dalcin                                        NULL,
2552f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                        NULL,
2555f4259b30SLisandro Dalcin                                        NULL,
2556e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2557f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2558a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25593964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2563f4259b30SLisandro Dalcin                                        NULL,
2564f4259b30SLisandro Dalcin                                        NULL,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
2567f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2568f4259b30SLisandro Dalcin                                        NULL,
2569f4259b30SLisandro Dalcin                                        NULL,
2570f4259b30SLisandro Dalcin                                        NULL,
2571f4259b30SLisandro Dalcin                                        NULL,
257246533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2573f4259b30SLisandro Dalcin                                        NULL,
2574f4259b30SLisandro Dalcin                                        NULL,
2575bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2576f4259b30SLisandro Dalcin                                        NULL,
2577d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2578d70f29a3SPierre Jolivet                                        NULL,
2579d70f29a3SPierre Jolivet                                        NULL,
258099a7f59eSMark Adams                                        NULL,
258199a7f59eSMark Adams                                        NULL,
25827fb60732SBarry Smith                                        NULL,
2583dec0b466SHong Zhang                                        /*150*/ NULL,
2584eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
2585*c7b600bfSPierre Jolivet                                        MatGetRowSumAbs_MPIBAIJ};
258679bdfe76SSatish Balay 
2587cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2588c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2589d94109b8SHong Zhang 
259066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2591d71ae5a4SJacob Faibussowitsch {
2592b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2593f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2594f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2595f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2596d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25973bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2598aac34f13SBarry Smith 
2599aac34f13SBarry Smith   PetscFunctionBegin;
26009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
26019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
26029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2605d0f46423SBarry Smith   m      = B->rmap->n / bs;
2606d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2607d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2608d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2609b8d659d7SLisandro Dalcin 
26105f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
26119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2612aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2613cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26145f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2615b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
261637cd3c0dSBarry Smith     dlen   = 0;
261737cd3c0dSBarry Smith     olen   = 0;
2618cf12db73SBarry Smith     JJ     = jj + ii[i];
2619b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
262037cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
262137cd3c0dSBarry Smith       else dlen++;
2622aac34f13SBarry Smith       JJ++;
2623aac34f13SBarry Smith     }
262437cd3c0dSBarry Smith     d_nnz[i] = dlen;
262537cd3c0dSBarry Smith     o_nnz[i] = olen;
2626aac34f13SBarry Smith   }
26279566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26289566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2629aac34f13SBarry Smith 
2630b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
263148a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2632b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2633b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2634cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2635cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2636bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2637cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26389566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26393adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26403adadaf3SJed Brown       PetscInt j;
26413adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26423adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26439566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26443adadaf3SJed Brown       }
26453adadaf3SJed Brown     }
2646aac34f13SBarry Smith   }
2647aac34f13SBarry Smith 
26489566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26493bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26503bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26533bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26543bd0feecSPierre Jolivet 
26559566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2657aac34f13SBarry Smith }
2658aac34f13SBarry Smith 
2659aac34f13SBarry Smith /*@C
266011a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2661aac34f13SBarry Smith 
2662d083f849SBarry Smith   Collective
2663aac34f13SBarry Smith 
2664aac34f13SBarry Smith   Input Parameters:
26651c4f3114SJed Brown + B  - the matrix
2666dfb205c3SBarry Smith . bs - the block size
266720f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2668aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2669d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2670aac34f13SBarry Smith 
2671664954b6SBarry Smith   Level: advanced
2672aac34f13SBarry Smith 
267395452b02SPatrick Sanan   Notes:
2674d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2675d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2676d8a51d2aSBarry Smith   called this routine.
2677d8a51d2aSBarry Smith 
267811a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
267911a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26803adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
268111a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26823adadaf3SJed Brown   block column and the second index is over columns within a block.
26833adadaf3SJed Brown 
2684664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2685664954b6SBarry Smith 
26867d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2687aac34f13SBarry Smith @*/
2688d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2689d71ae5a4SJacob Faibussowitsch {
2690aac34f13SBarry Smith   PetscFunctionBegin;
26916ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26926ba663aaSJed Brown   PetscValidType(B, 1);
26936ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2694cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2696aac34f13SBarry Smith }
2697aac34f13SBarry Smith 
2698d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2699d71ae5a4SJacob Faibussowitsch {
2700ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2701535b19f3SBarry Smith   PetscInt     i;
27025d2a9ed1SStefano Zampini   PetscMPIInt  size;
2703a23d5eceSKris Buschelman 
2704a23d5eceSKris Buschelman   PetscFunctionBegin;
2705ad79cf63SBarry Smith   if (B->hash_active) {
2706aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2707ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2708ad79cf63SBarry Smith   }
2709ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
27109566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
27119566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2714899cda47SBarry Smith 
2715a23d5eceSKris Buschelman   if (d_nnz) {
2716ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2717a23d5eceSKris Buschelman   }
2718a23d5eceSKris Buschelman   if (o_nnz) {
2719ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2720a23d5eceSKris Buschelman   }
2721a23d5eceSKris Buschelman 
2722a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2723d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2724d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2725d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2726d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2727a23d5eceSKris Buschelman 
2728ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2729d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2730d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2731d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2732d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2733a23d5eceSKris Buschelman 
2734cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2735eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2736cb7b82ddSBarry Smith #else
27379566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2738cb7b82ddSBarry Smith #endif
27399566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27419566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2742cb7b82ddSBarry Smith 
27439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2744c508b908SBarry Smith 
2745c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27469566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27479566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27489566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27499566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2750c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2751cb7b82ddSBarry Smith 
2752c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2753ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27549566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27559566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27569566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2757c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2758a23d5eceSKris Buschelman 
27599566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27609566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2761526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2762cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2763cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2765a23d5eceSKris Buschelman }
2766a23d5eceSKris Buschelman 
27677087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27687087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27695bf65638SKris Buschelman 
2770d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2771d71ae5a4SJacob Faibussowitsch {
277282094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
277382094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
277482094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
277582094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
277682094794SBarry Smith 
277782094794SBarry Smith   PetscFunctionBegin;
27789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
277982094794SBarry Smith   ii[0] = 0;
278082094794SBarry Smith   for (i = 0; i < M; i++) {
278108401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
278208401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
278382094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27845ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27855ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27869371c9d4SSatish Balay       if (jd[j] == i) {
27879371c9d4SSatish Balay         ii[i + 1]--;
27889371c9d4SSatish Balay         break;
27899371c9d4SSatish Balay       }
27905ee9ba1cSJed Brown     }
279182094794SBarry Smith   }
27929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
279382094794SBarry Smith   cnt = 0;
279482094794SBarry Smith   for (i = 0; i < M; i++) {
279582094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
279682094794SBarry Smith       if (garray[jo[j]] > rstart) break;
279782094794SBarry Smith       jj[cnt++] = garray[jo[j]];
279882094794SBarry Smith     }
279982094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2800ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
280182094794SBarry Smith     }
2802ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
280382094794SBarry Smith   }
28049566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
28053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
280682094794SBarry Smith }
280782094794SBarry Smith 
2808c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
280962471d69SBarry Smith 
2810cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2811b2573a8aSBarry Smith 
2812d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2813d71ae5a4SJacob Faibussowitsch {
281462471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
281585a69837SSatish Balay   Mat_MPIAIJ  *b;
28165f80ce2aSJacob Faibussowitsch   Mat          B;
281762471d69SBarry Smith 
281862471d69SBarry Smith   PetscFunctionBegin;
28195f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
282062471d69SBarry Smith 
28210f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28220f6d62edSLisandro Dalcin     B = *newmat;
28230f6d62edSLisandro Dalcin   } else {
28249566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28259566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28269566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28279566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28299566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28300f6d62edSLisandro Dalcin   }
283162471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
283262471d69SBarry Smith 
28330f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28349566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28359566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28360f6d62edSLisandro Dalcin   } else {
28377c612885SStefano Zampini     PetscInt   *garray = a->garray;
28387c612885SStefano Zampini     Mat_SeqAIJ *bB;
28397c612885SStefano Zampini     PetscInt    bs, nnz;
28409566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28419566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28427c612885SStefano Zampini     /* just clear out the data structure */
28437c612885SStefano Zampini     PetscCall(MatDisAssemble_MPIAIJ(B));
28449566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28459566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28467c612885SStefano Zampini 
28477c612885SStefano Zampini     /* Global numbering for b->B columns */
28487c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28497c612885SStefano Zampini     bs  = A->rmap->bs;
28507c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28517c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28527c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28537c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28547c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28557c612885SStefano Zampini     }
28560f6d62edSLisandro Dalcin   }
28579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28590f6d62edSLisandro Dalcin 
2860511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28619566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
286262471d69SBarry Smith   } else {
286362471d69SBarry Smith     *newmat = B;
286462471d69SBarry Smith   }
28653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
286662471d69SBarry Smith }
286762471d69SBarry Smith 
28680bad9183SKris Buschelman /*MC
2869fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28700bad9183SKris Buschelman 
28710bad9183SKris Buschelman    Options Database Keys:
287211a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28738c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28746679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
287567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28760bad9183SKris Buschelman 
28770bad9183SKris Buschelman    Level: beginner
28780cd7f59aSBarry Smith 
287911a5261eSBarry Smith    Note:
28805e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
288111a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28820bad9183SKris Buschelman 
28835e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28840bad9183SKris Buschelman M*/
28850bad9183SKris Buschelman 
2886cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2887c0cdd4a1SDahai Guo 
2888d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2889d71ae5a4SJacob Faibussowitsch {
2890273d9f13SBarry Smith   Mat_MPIBAIJ *b;
289194ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2892273d9f13SBarry Smith 
2893273d9f13SBarry Smith   PetscFunctionBegin;
28944dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
289582502324SSatish Balay   B->data      = (void *)b;
2896aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2897273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2898273d9f13SBarry Smith 
2899273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
29009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
29019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2902273d9f13SBarry Smith 
2903273d9f13SBarry Smith   /* build local table of row and column ownerships */
29049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2905273d9f13SBarry Smith 
2906273d9f13SBarry Smith   /* build cache for off array entries formed */
29079566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
290826fbe8dcSKarl Rupp 
2909273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
29100298fd71SBarry Smith   b->colmap      = NULL;
29110298fd71SBarry Smith   b->garray      = NULL;
2912273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2913273d9f13SBarry Smith 
2914273d9f13SBarry Smith   /* stuff used in block assembly */
2915f4259b30SLisandro Dalcin   b->barray = NULL;
2916273d9f13SBarry Smith 
2917273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2918f4259b30SLisandro Dalcin   b->lvec  = NULL;
2919f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2920273d9f13SBarry Smith 
2921273d9f13SBarry Smith   /* stuff for MatGetRow() */
2922f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2923f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2924273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2925273d9f13SBarry Smith 
2926273d9f13SBarry Smith   /* hash table stuff */
2927f4259b30SLisandro Dalcin   b->ht           = NULL;
2928f4259b30SLisandro Dalcin   b->hd           = NULL;
2929273d9f13SBarry Smith   b->ht_size      = 0;
2930273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2931273d9f13SBarry Smith   b->ht_fact      = 0;
2932273d9f13SBarry Smith   b->ht_total_ct  = 0;
2933273d9f13SBarry Smith   b->ht_insert_ct = 0;
2934273d9f13SBarry Smith 
29357dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29367a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29377a868f3eSHong Zhang 
29389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29417ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29437ea3e4caSstefano_zampini #endif
29449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29519566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
295294ae4db5SBarry Smith 
2953d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29549566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
295594ae4db5SBarry Smith   if (flg) {
295694ae4db5SBarry Smith     PetscReal fact = 1.39;
29579566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29589566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
295994ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29609566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29619566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
296294ae4db5SBarry Smith   }
2963d0609cedSBarry Smith   PetscOptionsEnd();
29643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2965273d9f13SBarry Smith }
2966273d9f13SBarry Smith 
29672920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2968209238afSKris Buschelman /*MC
2969002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2970209238afSKris Buschelman 
297111a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
297211a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2973209238afSKris Buschelman 
2974209238afSKris Buschelman    Options Database Keys:
297511a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2976209238afSKris Buschelman 
2977209238afSKris Buschelman   Level: beginner
2978209238afSKris Buschelman 
297967be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2980209238afSKris Buschelman M*/
2981209238afSKris Buschelman 
2982273d9f13SBarry Smith /*@C
298311a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
298467be906fSBarry Smith   (block compressed row).
2985273d9f13SBarry Smith 
2986c3339decSBarry Smith   Collective
2987273d9f13SBarry Smith 
2988273d9f13SBarry Smith   Input Parameters:
29891c4f3114SJed Brown + B     - the matrix
299011a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
299167be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2992273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2993273d9f13SBarry Smith            submatrix  (same for all local rows)
2994273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2995273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
299667be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
299795742e49SBarry Smith            set it even if it is zero.
2998273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2999273d9f13SBarry Smith            submatrix (same for all local rows).
3000273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
3001273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
300267be906fSBarry Smith            each block row) or `NULL`.
3003273d9f13SBarry Smith 
300449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3005273d9f13SBarry Smith 
3006273d9f13SBarry Smith   Options Database Keys:
30078c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
300867b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
3009273d9f13SBarry Smith 
301067be906fSBarry Smith   Level: intermediate
301167be906fSBarry Smith 
3012273d9f13SBarry Smith   Notes:
301367be906fSBarry Smith   For good matrix assembly performance
301467be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
301567be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
301667be906fSBarry Smith   performance can be increased by more than a factor of 50.
301767be906fSBarry Smith 
301811a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3019273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
3020273d9f13SBarry Smith 
3021273d9f13SBarry Smith   Storage Information:
3022273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3023273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3024273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3025273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3026273d9f13SBarry Smith 
3027273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
302867be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
302967be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3030273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
303167be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3032273d9f13SBarry Smith 
3033273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3034273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3035273d9f13SBarry Smith 
3036273d9f13SBarry Smith .vb
3037273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3038a4b1a0f6SJed Brown           --------------------------
3039273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3040273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3041273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3042a4b1a0f6SJed Brown           --------------------------
3043273d9f13SBarry Smith .ve
3044273d9f13SBarry Smith 
3045273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3046273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3047273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
304811a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3049273d9f13SBarry Smith 
305067be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
305167be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3052273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
305320f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3054273d9f13SBarry Smith 
305511a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3056aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
305767be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3058aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3059aa95bbe8SBarry Smith 
306067be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3061273d9f13SBarry Smith @*/
3062d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3063d71ae5a4SJacob Faibussowitsch {
3064273d9f13SBarry Smith   PetscFunctionBegin;
30656ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30666ba663aaSJed Brown   PetscValidType(B, 1);
30676ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3068cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3070273d9f13SBarry Smith }
3071273d9f13SBarry Smith 
30722920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
307379bdfe76SSatish Balay /*@C
307411a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
307567be906fSBarry Smith   (block compressed row).
307679bdfe76SSatish Balay 
3077d083f849SBarry Smith   Collective
3078db81eaa0SLois Curfman McInnes 
307979bdfe76SSatish Balay   Input Parameters:
3080db81eaa0SLois Curfman McInnes + comm  - MPI communicator
308111a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
308211a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
308311a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
308492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
308592e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
308611a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
308792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
308892e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
308911a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
309011a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
309147a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
309279bdfe76SSatish Balay            submatrix  (same for all local rows)
309347a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
309492e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30950298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
309695742e49SBarry Smith            and set it even if it is zero.
309747a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
309879bdfe76SSatish Balay            submatrix (same for all local rows).
309947a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
310092e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
31010298fd71SBarry Smith            each block row) or NULL.
310279bdfe76SSatish Balay 
310379bdfe76SSatish Balay   Output Parameter:
310479bdfe76SSatish Balay . A - the matrix
310579bdfe76SSatish Balay 
3106db81eaa0SLois Curfman McInnes   Options Database Keys:
31078c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
310867b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
31093ffaccefSLois Curfman McInnes 
311067be906fSBarry Smith   Level: intermediate
311167be906fSBarry Smith 
311267be906fSBarry Smith   Notes:
311377433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
311477433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
311577433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
311677433607SBarry Smith 
311767be906fSBarry Smith   For good matrix assembly performance
311867be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
311967be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
312067be906fSBarry Smith   performance can be increased by more than a factor of 50.
312167be906fSBarry Smith 
312249a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
312349a6f317SBarry Smith 
312447a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
312547a75d0bSBarry Smith 
312679bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
312779bdfe76SSatish Balay   (possibly both).
312879bdfe76SSatish Balay 
312911a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3130be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3131be79a94dSBarry Smith 
313279bdfe76SSatish Balay   Storage Information:
313379bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
313479bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
313579bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
313679bdfe76SSatish Balay   local matrix (a rectangular submatrix).
313779bdfe76SSatish Balay 
313879bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
313979bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
314067be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
314179bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
314267be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
314379bdfe76SSatish Balay 
314479bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
314579bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
314679bdfe76SSatish Balay 
3147db81eaa0SLois Curfman McInnes .vb
3148db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3149a4b1a0f6SJed Brown           --------------------------
3150db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3151db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3152db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3153a4b1a0f6SJed Brown           --------------------------
3154db81eaa0SLois Curfman McInnes .ve
315579bdfe76SSatish Balay 
315679bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
315779bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
315879bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
315911a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
316079bdfe76SSatish Balay 
316167be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
316267be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
316379bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
316420f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
316579bdfe76SSatish Balay 
316642747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
316779bdfe76SSatish Balay @*/
3168d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3169d71ae5a4SJacob Faibussowitsch {
3170b24ad042SBarry Smith   PetscMPIInt size;
317179bdfe76SSatish Balay 
3172d64ed03dSBarry Smith   PetscFunctionBegin;
31739566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31749566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3176273d9f13SBarry Smith   if (size > 1) {
31779566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31789566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3179273d9f13SBarry Smith   } else {
31809566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31819566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31823914022bSBarry Smith   }
31833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
318479bdfe76SSatish Balay }
3185026e39d0SSatish Balay 
3186d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3187d71ae5a4SJacob Faibussowitsch {
31880ac07820SSatish Balay   Mat          mat;
31890ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3190b24ad042SBarry Smith   PetscInt     len = 0;
31910ac07820SSatish Balay 
3192d64ed03dSBarry Smith   PetscFunctionBegin;
3193f4259b30SLisandro Dalcin   *newmat = NULL;
31949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31959566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31969566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31977fff6886SHong Zhang 
3198420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3199420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3200420957c1SBarry Smith   if (matin->hash_active) {
3201420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3202420957c1SBarry Smith   } else {
3203d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3204273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
32050ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
32067fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
32077fff6886SHong Zhang 
3208273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3209d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
32100ac07820SSatish Balay     a->bs2        = oldmat->bs2;
32110ac07820SSatish Balay     a->mbs        = oldmat->mbs;
32120ac07820SSatish Balay     a->nbs        = oldmat->nbs;
32130ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
32140ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
32150ac07820SSatish Balay 
32160ac07820SSatish Balay     a->size         = oldmat->size;
32170ac07820SSatish Balay     a->rank         = oldmat->rank;
3218aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3219aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3220f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3221f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
32220ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3223f4259b30SLisandro Dalcin     a->barray       = NULL;
3224899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3225899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3226899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3227899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32280ac07820SSatish Balay 
3229133cdb44SSatish Balay     /* hash table stuff */
3230f4259b30SLisandro Dalcin     a->ht           = NULL;
3231f4259b30SLisandro Dalcin     a->hd           = NULL;
3232133cdb44SSatish Balay     a->ht_size      = 0;
3233133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
323425fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3235133cdb44SSatish Balay     a->ht_total_ct  = 0;
3236133cdb44SSatish Balay     a->ht_insert_ct = 0;
3237133cdb44SSatish Balay 
32389566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32390ac07820SSatish Balay     if (oldmat->colmap) {
3240aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3241eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
324248e59246SSatish Balay #else
32439566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32449566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
324548e59246SSatish Balay #endif
3246f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32474beb1cfeSHong Zhang 
3248f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32499566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32509566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3251f4259b30SLisandro Dalcin     } else a->garray = NULL;
32520ac07820SSatish Balay 
32539566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32549566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32559566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32567fff6886SHong Zhang 
32579566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32589566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3259420957c1SBarry Smith   }
32609566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32610ac07820SSatish Balay   *newmat = mat;
32623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32630ac07820SSatish Balay }
326457b952d6SSatish Balay 
3265618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3267d71ae5a4SJacob Faibussowitsch {
3268b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3269b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3270b51a4376SLisandro Dalcin   PetscScalar *matvals;
3271b51a4376SLisandro Dalcin 
3272b51a4376SLisandro Dalcin   PetscFunctionBegin;
32739566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3274b51a4376SLisandro Dalcin 
3275b51a4376SLisandro Dalcin   /* read in matrix header */
32769566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32775f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32789371c9d4SSatish Balay   M  = header[1];
32799371c9d4SSatish Balay   N  = header[2];
32809371c9d4SSatish Balay   nz = header[3];
32815f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32825f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32835f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3284b51a4376SLisandro Dalcin 
3285b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32869566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3287618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3288618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3289618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3290b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3291b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3292b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3295b51a4376SLisandro Dalcin 
3296b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32979566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32985f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32999566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
33009566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
33019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
33029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
33039371c9d4SSatish Balay   mbs = m / bs;
33049371c9d4SSatish Balay   nbs = n / bs;
3305b51a4376SLisandro Dalcin 
3306b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
33079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
33089566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
33099371c9d4SSatish Balay   rowidxs[0] = 0;
33109371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
33111c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
33125f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3313b51a4376SLisandro Dalcin 
3314b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
33159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
33169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
33179566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3318b51a4376SLisandro Dalcin 
3319b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3320b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3321b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3322618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3323b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3324b51a4376SLisandro Dalcin 
33259566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33269566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33279566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33289566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3329b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33309566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33319566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3332618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3333618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3334618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3335618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3336618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3337618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3338618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3339b51a4376SLisandro Dalcin             } else {
33409566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3341b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3342b51a4376SLisandro Dalcin             }
3343b51a4376SLisandro Dalcin           }
3344618cc2edSLisandro Dalcin         }
3345618cc2edSLisandro Dalcin       }
3346618cc2edSLisandro Dalcin     }
33479566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33489566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33499566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33509566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33519566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3352b51a4376SLisandro Dalcin   }
3353b51a4376SLisandro Dalcin 
3354b51a4376SLisandro Dalcin   /* store matrix values */
3355b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3356b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33579927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3358b51a4376SLisandro Dalcin   }
3359b51a4376SLisandro Dalcin 
33609566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33619566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3365b51a4376SLisandro Dalcin }
3366b51a4376SLisandro Dalcin 
3367d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3368d71ae5a4SJacob Faibussowitsch {
33697f489da9SVaclav Hapla   PetscBool isbinary;
33704683f7a4SShri Abhyankar 
33714683f7a4SShri Abhyankar   PetscFunctionBegin;
33729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33735f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33749566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33764683f7a4SShri Abhyankar }
33774683f7a4SShri Abhyankar 
3378133cdb44SSatish Balay /*@
337911a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3380133cdb44SSatish Balay 
3381133cdb44SSatish Balay   Input Parameters:
3382a2b725a8SWilliam Gropp + mat  - the matrix
3383a2b725a8SWilliam Gropp - fact - factor
3384133cdb44SSatish Balay 
338511a5261eSBarry Smith   Options Database Key:
338611a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3387fee21e36SBarry Smith 
33888c890885SBarry Smith   Level: advanced
33898c890885SBarry Smith 
339067be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3391133cdb44SSatish Balay @*/
3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3393d71ae5a4SJacob Faibussowitsch {
33945bf65638SKris Buschelman   PetscFunctionBegin;
3395cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33975bf65638SKris Buschelman }
33985bf65638SKris Buschelman 
3399d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3400d71ae5a4SJacob Faibussowitsch {
340125fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3402133cdb44SSatish Balay 
3403133cdb44SSatish Balay   PetscFunctionBegin;
3404133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3405133cdb44SSatish Balay   baij->ht_fact = fact;
34063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3407133cdb44SSatish Balay }
3408f2a5309cSSatish Balay 
3409d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3410d71ae5a4SJacob Faibussowitsch {
3411f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3412ab4d48faSStefano Zampini   PetscBool    flg;
34135fd66863SKarl Rupp 
3414f2a5309cSSatish Balay   PetscFunctionBegin;
34159566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
34165f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
341721e72a00SBarry Smith   if (Ad) *Ad = a->A;
341821e72a00SBarry Smith   if (Ao) *Ao = a->B;
341921e72a00SBarry Smith   if (colmap) *colmap = a->garray;
34203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3421f2a5309cSSatish Balay }
342285535b8eSBarry Smith 
342385535b8eSBarry Smith /*
342485535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
342585535b8eSBarry Smith */
342685535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
342785535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
342885535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
342985535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
343085535b8eSBarry Smith #endif
343185535b8eSBarry Smith 
34322920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
343385535b8eSBarry Smith /*@C
343411a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
343585535b8eSBarry Smith 
3436c3339decSBarry Smith   Collective
343785535b8eSBarry Smith 
343885535b8eSBarry Smith   Input Parameters:
3439fe59aa6dSJacob Faibussowitsch + matin  - the matrix
344085535b8eSBarry Smith . min    - number of input rows
344185535b8eSBarry Smith . im     - input rows
344285535b8eSBarry Smith . nin    - number of input columns
344385535b8eSBarry Smith . in     - input columns
344485535b8eSBarry Smith . v      - numerical values input
344511a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
344685535b8eSBarry Smith 
344720f4b53cSBarry Smith   Level: advanced
344820f4b53cSBarry Smith 
3449fe59aa6dSJacob Faibussowitsch   Developer Notes:
345011a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
345185535b8eSBarry Smith 
345267be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
345385535b8eSBarry Smith @*/
345466976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3455d71ae5a4SJacob Faibussowitsch {
345685535b8eSBarry Smith   /* convert input arguments to C version */
345785535b8eSBarry Smith   Mat        mat = *matin;
345885535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
345985535b8eSBarry Smith   InsertMode addv = *addvin;
346085535b8eSBarry Smith 
346185535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
346285535b8eSBarry Smith   const MatScalar *value;
346385535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3464ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
346585535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
346685535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3467d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
346885535b8eSBarry Smith 
346985535b8eSBarry Smith   PetscFunctionBegin;
347085535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
347126fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34725f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34735f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
347485535b8eSBarry Smith   if (mat->assembled) {
347585535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
347685535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
347785535b8eSBarry Smith   }
34789566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
347985535b8eSBarry Smith 
348085535b8eSBarry Smith   if (!barray) {
34819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
348285535b8eSBarry Smith     baij->barray = barray;
348385535b8eSBarry Smith   }
348485535b8eSBarry Smith 
348526fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
348626fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
348726fbe8dcSKarl Rupp 
348885535b8eSBarry Smith   for (i = 0; i < m; i++) {
348985535b8eSBarry Smith     if (im[i] < 0) continue;
34906bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
349185535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
349285535b8eSBarry Smith       row = im[i] - rstart;
349385535b8eSBarry Smith       for (j = 0; j < n; j++) {
349485535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
349585535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
349685535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
349785535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
349885535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
349985535b8eSBarry Smith         } else { /* Here a copy is required */
350085535b8eSBarry Smith           if (roworiented) {
350185535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
350285535b8eSBarry Smith           } else {
350385535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
350485535b8eSBarry Smith           }
350585535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3506ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
350785535b8eSBarry Smith           }
350885535b8eSBarry Smith           barray -= bs2;
350985535b8eSBarry Smith         }
351085535b8eSBarry Smith 
351185535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
351285535b8eSBarry Smith           col = in[j] - cstart;
35139566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3514f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3515f7d195e4SLawrence Mitchell           continue;
3516f7d195e4SLawrence Mitchell         } else {
3517f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
351885535b8eSBarry Smith           if (mat->was_assembled) {
351948a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
352085535b8eSBarry Smith 
352185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
352285535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35239371c9d4SSatish Balay             {
35249371c9d4SSatish Balay               PetscInt data;
3525eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
352608401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
352785535b8eSBarry Smith             }
352885535b8eSBarry Smith   #else
352908401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
353085535b8eSBarry Smith   #endif
353185535b8eSBarry Smith #endif
353285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3533eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
353485535b8eSBarry Smith             col = (col - 1) / bs;
353585535b8eSBarry Smith #else
353685535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
353785535b8eSBarry Smith #endif
3538f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35399566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
354085535b8eSBarry Smith               col = in[j];
354185535b8eSBarry Smith             }
354226fbe8dcSKarl Rupp           } else col = in[j];
35439566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
354485535b8eSBarry Smith         }
354585535b8eSBarry Smith       }
354685535b8eSBarry Smith     } else {
354785535b8eSBarry Smith       if (!baij->donotstash) {
354885535b8eSBarry Smith         if (roworiented) {
35499566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
355085535b8eSBarry Smith         } else {
35519566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
355285535b8eSBarry Smith         }
355385535b8eSBarry Smith       }
355485535b8eSBarry Smith     }
355585535b8eSBarry Smith   }
355685535b8eSBarry Smith 
355785535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
356085535b8eSBarry Smith }
3561dfb205c3SBarry Smith 
3562dfb205c3SBarry Smith /*@
3563d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3564dfb205c3SBarry Smith 
3565d083f849SBarry Smith   Collective
3566dfb205c3SBarry Smith 
3567dfb205c3SBarry Smith   Input Parameters:
3568dfb205c3SBarry Smith + comm - MPI communicator
3569dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
357011a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3571dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3572d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3573d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3574d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3575d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3576483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3577dfb205c3SBarry Smith . j    - column indices
3578dfb205c3SBarry Smith - a    - matrix values
3579dfb205c3SBarry Smith 
3580dfb205c3SBarry Smith   Output Parameter:
3581dfb205c3SBarry Smith . mat - the matrix
3582dfb205c3SBarry Smith 
3583dfb205c3SBarry Smith   Level: intermediate
3584dfb205c3SBarry Smith 
3585dfb205c3SBarry Smith   Notes:
358667be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3587dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
358811a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3589dfb205c3SBarry Smith 
35903adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35913adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35923adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35933adadaf3SJed Brown   with column-major ordering within blocks.
35943adadaf3SJed Brown 
3595d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3596dfb205c3SBarry Smith 
359767be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35987d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3599dfb205c3SBarry Smith @*/
3600d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3601d71ae5a4SJacob Faibussowitsch {
3602dfb205c3SBarry Smith   PetscFunctionBegin;
36035f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
36045f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
36059566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
36069566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
36079566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
36089566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
36099566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
36109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
36119566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
36129566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
36133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3614dfb205c3SBarry Smith }
3615e561ad89SHong Zhang 
3616d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3617d71ae5a4SJacob Faibussowitsch {
3618bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3619bd153df0SHong Zhang   PetscInt    *indx;
3620bd153df0SHong Zhang   PetscScalar *values;
3621e561ad89SHong Zhang 
3622e561ad89SHong Zhang   PetscFunctionBegin;
36239566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3624bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3625bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36262c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3627bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
362877f764caSHong Zhang     PetscMPIInt  rank, size;
3629e561ad89SHong Zhang 
36309566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36319371c9d4SSatish Balay     mbs = m / bs;
36329371c9d4SSatish Balay     Nbs = N / cbs;
363348a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3634da91a574SPierre Jolivet     nbs = n / cbs;
3635e561ad89SHong Zhang 
36369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3637d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
363877f764caSHong Zhang 
36399566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36409566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
364177f764caSHong Zhang     if (rank == size - 1) {
364277f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36435f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
364477f764caSHong Zhang     }
364577f764caSHong Zhang 
3646d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3647bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36489566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3649647a6520SHong Zhang       nnz = nnz / bs;
3650647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36519566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36529566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3653e561ad89SHong Zhang     }
36549566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3655e561ad89SHong Zhang 
36569566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36579566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36589566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36599566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36609566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36619566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3662d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3664e561ad89SHong Zhang   }
3665e561ad89SHong Zhang 
3666bd153df0SHong Zhang   /* numeric phase */
36679566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36689566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3669e561ad89SHong Zhang 
3670e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36719566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3672e561ad89SHong Zhang     Ii = i + rstart;
36739566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36749566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3675e561ad89SHong Zhang   }
36769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3679e561ad89SHong Zhang }
3680