1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 614e879edeSHong Zhang PetscScalar *va, *vv; 624e879edeSHong Zhang Vec vB, vA; 634e879edeSHong Zhang const PetscScalar *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66*c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76*c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100*c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101*c7b600bfSPierre Jolivet { 102*c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103*c7b600bfSPierre Jolivet Vec vB, vA; 104*c7b600bfSPierre Jolivet 105*c7b600bfSPierre Jolivet PetscFunctionBegin; 106*c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107*c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108*c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109*c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110*c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111*c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112*c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113*c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114*c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115*c7b600bfSPierre Jolivet } 116*c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 257ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 2949bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 4602515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 461aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4629371c9d4SSatish Balay { 4639371c9d4SSatish Balay PetscInt data; 464eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 46508401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 466fa46199cSSatish Balay } 46748e59246SSatish Balay #else 46808401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 469a5eb4965SSatish Balay #endif 47048e59246SSatish Balay #endif 471aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 472eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 473fa46199cSSatish Balay col = (col - 1) / bs; 47448e59246SSatish Balay #else 475a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 47648e59246SSatish Balay #endif 477f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4789566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 479ab26458aSBarry Smith col = in[j]; 4805f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 481db4deed7SKarl Rupp } else col = in[j]; 4829566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 485d64ed03dSBarry Smith } else { 4865f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 487ab26458aSBarry Smith if (!baij->donotstash) { 488ff2fd236SBarry Smith if (roworiented) { 4899566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 490ff2fd236SBarry Smith } else { 4919566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 492ff2fd236SBarry Smith } 493abef11f7SSatish Balay } 494ab26458aSBarry Smith } 495ab26458aSBarry Smith } 4963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 497ab26458aSBarry Smith } 4986fa18ffdSBarry Smith 4990bdbc534SSatish Balay #define HASH_KEY 0.6180339887 500b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 501b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 502b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 50366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 504d71ae5a4SJacob Faibussowitsch { 5050bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 506ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 507b24ad042SBarry Smith PetscInt i, j, row, col; 508d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 509d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 510d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 511329f5518SBarry Smith PetscReal tmp; 5123eda8832SBarry Smith MatScalar **HD = baij->hd, value; 513b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5140bdbc534SSatish Balay 5150bdbc534SSatish Balay PetscFunctionBegin; 5160bdbc534SSatish Balay for (i = 0; i < m; i++) { 51776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5185f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5195f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 52076bd3646SJed Brown } 5210bdbc534SSatish Balay row = im[i]; 522c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5230bdbc534SSatish Balay for (j = 0; j < n; j++) { 5240bdbc534SSatish Balay col = in[j]; 525db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 526db4deed7SKarl Rupp else value = v[i + j * m]; 527b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 528c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 529c2760754SSatish Balay h1 = HASH(size, key, tmp); 5300bdbc534SSatish Balay 531c2760754SSatish Balay idx = h1; 53276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 533187ce0cbSSatish Balay insert_ct++; 534187ce0cbSSatish Balay total_ct++; 535187ce0cbSSatish Balay if (HT[idx] != key) { 536fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 537187ce0cbSSatish Balay if (idx == size) { 538fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5395f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 540187ce0cbSSatish Balay } 541187ce0cbSSatish Balay } 54276bd3646SJed Brown } else if (HT[idx] != key) { 543fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 544c2760754SSatish Balay if (idx == size) { 545fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5465f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 547c2760754SSatish Balay } 548c2760754SSatish Balay } 549c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 550c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 551c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5520bdbc534SSatish Balay } 55326fbe8dcSKarl Rupp } else if (!baij->donotstash) { 554ff2fd236SBarry Smith if (roworiented) { 5559566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 556ff2fd236SBarry Smith } else { 5579566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } 56176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 562abf3b562SBarry Smith baij->ht_total_ct += total_ct; 563abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 56476bd3646SJed Brown } 5653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay 56866976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 569d71ae5a4SJacob Faibussowitsch { 5700bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 571ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 572b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 573899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 574d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 575b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 576329f5518SBarry Smith PetscReal tmp; 5773eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 578dd6ea824SBarry Smith const PetscScalar *v_t, *value; 579b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5800bdbc534SSatish Balay 581d0a41580SSatish Balay PetscFunctionBegin; 58226fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 58326fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 58426fbe8dcSKarl Rupp 5850bdbc534SSatish Balay for (i = 0; i < m; i++) { 58676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5875f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5885f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 58976bd3646SJed Brown } 5900bdbc534SSatish Balay row = im[i]; 591ab715e2cSSatish Balay v_t = v + i * nbs2; 592c2760754SSatish Balay if (row >= rstart && row < rend) { 5930bdbc534SSatish Balay for (j = 0; j < n; j++) { 5940bdbc534SSatish Balay col = in[j]; 5950bdbc534SSatish Balay 5960bdbc534SSatish Balay /* Look up into the Hash Table */ 597c2760754SSatish Balay key = row * Nbs + col + 1; 598c2760754SSatish Balay h1 = HASH(size, key, tmp); 5990bdbc534SSatish Balay 600c2760754SSatish Balay idx = h1; 60176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 602187ce0cbSSatish Balay total_ct++; 603187ce0cbSSatish Balay insert_ct++; 604187ce0cbSSatish Balay if (HT[idx] != key) { 605fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 606187ce0cbSSatish Balay if (idx == size) { 607fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 6085f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 609187ce0cbSSatish Balay } 610187ce0cbSSatish Balay } 61176bd3646SJed Brown } else if (HT[idx] != key) { 612fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 613c2760754SSatish Balay if (idx == size) { 614fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6155f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 616c2760754SSatish Balay } 617c2760754SSatish Balay } 618c2760754SSatish Balay baij_a = HD[idx]; 6190bdbc534SSatish Balay if (roworiented) { 620c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 621187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 622187ce0cbSSatish Balay value = v_t; 623187ce0cbSSatish Balay v_t += bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 626ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 627b4cc0f5aSSatish Balay } 628fef45726SSatish Balay } else { 629c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 630ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 631fef45726SSatish Balay } 632fef45726SSatish Balay } 6330bdbc534SSatish Balay } else { 6340bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 635fef45726SSatish Balay if (addv == ADD_VALUES) { 636b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 637ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 638fef45726SSatish Balay } 639fef45726SSatish Balay } else { 640fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 641ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 642b4cc0f5aSSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 6450bdbc534SSatish Balay } 6460bdbc534SSatish Balay } else { 6470bdbc534SSatish Balay if (!baij->donotstash) { 6480bdbc534SSatish Balay if (roworiented) { 6499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6500bdbc534SSatish Balay } else { 6519566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6520bdbc534SSatish Balay } 6530bdbc534SSatish Balay } 6540bdbc534SSatish Balay } 6550bdbc534SSatish Balay } 65676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 657abf3b562SBarry Smith baij->ht_total_ct += total_ct; 658abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 65976bd3646SJed Brown } 6603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6610bdbc534SSatish Balay } 662133cdb44SSatish Balay 66366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 664d71ae5a4SJacob Faibussowitsch { 665d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 666d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 667d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 668d6de1c52SSatish Balay 669133cdb44SSatish Balay PetscFunctionBegin; 670d6de1c52SSatish Balay for (i = 0; i < m; i++) { 67154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 67254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 673d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 674d6de1c52SSatish Balay row = idxm[i] - bsrstart; 675d6de1c52SSatish Balay for (j = 0; j < n; j++) { 67654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 678d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 679d6de1c52SSatish Balay col = idxn[j] - bscstart; 6809566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 681d64ed03dSBarry Smith } else { 68248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 683aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 684eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 685fa46199cSSatish Balay data--; 68648e59246SSatish Balay #else 68748e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 68848e59246SSatish Balay #endif 68948e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 690d9d09a02SSatish Balay else { 69148e59246SSatish Balay col = data + idxn[j] % bs; 6929566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 693d6de1c52SSatish Balay } 694d6de1c52SSatish Balay } 695d6de1c52SSatish Balay } 696f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 697d6de1c52SSatish Balay } 6983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 699d6de1c52SSatish Balay } 700d6de1c52SSatish Balay 70166976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 702d71ae5a4SJacob Faibussowitsch { 703d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 704d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 705d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 706329f5518SBarry Smith PetscReal sum = 0.0; 7073eda8832SBarry Smith MatScalar *v; 708d6de1c52SSatish Balay 709d64ed03dSBarry Smith PetscFunctionBegin; 710d6de1c52SSatish Balay if (baij->size == 1) { 7119566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 712d6de1c52SSatish Balay } else { 713d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 714d6de1c52SSatish Balay v = amat->a; 7158a62d963SHong Zhang nz = amat->nz * bs2; 7168a62d963SHong Zhang for (i = 0; i < nz; i++) { 7179371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7189371c9d4SSatish Balay v++; 719d6de1c52SSatish Balay } 720d6de1c52SSatish Balay v = bmat->a; 7218a62d963SHong Zhang nz = bmat->nz * bs2; 7228a62d963SHong Zhang for (i = 0; i < nz; i++) { 7239371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7249371c9d4SSatish Balay v++; 725d6de1c52SSatish Balay } 7261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7278f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7288a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7298a62d963SHong Zhang PetscReal *tmp, *tmp2; 730899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7339371c9d4SSatish Balay v = amat->a; 7349371c9d4SSatish Balay jj = amat->j; 7358a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7368a62d963SHong Zhang for (j = 0; j < bs; j++) { 7378a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7388a62d963SHong Zhang for (row = 0; row < bs; row++) { 7399371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7409371c9d4SSatish Balay v++; 7418a62d963SHong Zhang } 7428a62d963SHong Zhang } 7438a62d963SHong Zhang jj++; 7448a62d963SHong Zhang } 7459371c9d4SSatish Balay v = bmat->a; 7469371c9d4SSatish Balay jj = bmat->j; 7478a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7488a62d963SHong Zhang for (j = 0; j < bs; j++) { 7498a62d963SHong Zhang col = bs * garray[*jj] + j; 7508a62d963SHong Zhang for (row = 0; row < bs; row++) { 7519371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7529371c9d4SSatish Balay v++; 7538a62d963SHong Zhang } 7548a62d963SHong Zhang } 7558a62d963SHong Zhang jj++; 7568a62d963SHong Zhang } 7571c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7588a62d963SHong Zhang *nrm = 0.0; 759d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7608a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7618a62d963SHong Zhang } 7629566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7639566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7648a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 765577dd1f9SKris Buschelman PetscReal *sums; 7669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7678a62d963SHong Zhang sum = 0.0; 7688a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7698a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7708a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7718a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7728a62d963SHong Zhang for (i = 0; i < nz; i++) { 7738a62d963SHong Zhang for (col = 0; col < bs; col++) { 7748a62d963SHong Zhang for (row = 0; row < bs; row++) { 7759371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7769371c9d4SSatish Balay v++; 7778a62d963SHong Zhang } 7788a62d963SHong Zhang } 7798a62d963SHong Zhang } 7808a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7818a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7828a62d963SHong Zhang for (i = 0; i < nz; i++) { 7838a62d963SHong Zhang for (col = 0; col < bs; col++) { 7848a62d963SHong Zhang for (row = 0; row < bs; row++) { 7859371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7869371c9d4SSatish Balay v++; 7878a62d963SHong Zhang } 7888a62d963SHong Zhang } 7898a62d963SHong Zhang } 7908a62d963SHong Zhang for (row = 0; row < bs; row++) { 7918a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7928a62d963SHong Zhang } 7938a62d963SHong Zhang } 7941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7959566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 796ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 797d64ed03dSBarry Smith } 7983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799d6de1c52SSatish Balay } 80057b952d6SSatish Balay 801fef45726SSatish Balay /* 802fef45726SSatish Balay Creates the hash table, and sets the table 803fef45726SSatish Balay This table is created only once. 804fef45726SSatish Balay If new entried need to be added to the matrix 805fef45726SSatish Balay then the hash table has to be destroyed and 806fef45726SSatish Balay recreated. 807fef45726SSatish Balay */ 80866976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 809d71ae5a4SJacob Faibussowitsch { 810596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 811596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 812596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 813b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 814fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 815899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 816b24ad042SBarry Smith PetscInt *HT, key; 8173eda8832SBarry Smith MatScalar **HD; 818329f5518SBarry Smith PetscReal tmp; 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8214a15367fSSatish Balay #endif 822fef45726SSatish Balay 823d64ed03dSBarry Smith PetscFunctionBegin; 8243ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 825fef45726SSatish Balay 826fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 827fca92195SBarry Smith ht_size = baij->ht_size; 8280bdbc534SSatish Balay 829fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8309566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 831b9e4cc15SSatish Balay HD = baij->hd; 832a07cd24cSSatish Balay HT = baij->ht; 833b9e4cc15SSatish Balay 834596b8d2eSBarry Smith /* Loop Over A */ 8350bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 836596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8370bdbc534SSatish Balay row = i + rstart; 8380bdbc534SSatish Balay col = aj[j] + cstart; 839596b8d2eSBarry Smith 840187ce0cbSSatish Balay key = row * Nbs + col + 1; 841fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 842fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 843fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 844fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 845fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 846596b8d2eSBarry Smith break; 8476cf91177SBarry Smith #if defined(PETSC_USE_INFO) 848187ce0cbSSatish Balay } else { 849187ce0cbSSatish Balay ct++; 850187ce0cbSSatish Balay #endif 851596b8d2eSBarry Smith } 852187ce0cbSSatish Balay } 8536cf91177SBarry Smith #if defined(PETSC_USE_INFO) 854187ce0cbSSatish Balay if (k > max) max = k; 855187ce0cbSSatish Balay #endif 856596b8d2eSBarry Smith } 857596b8d2eSBarry Smith } 858596b8d2eSBarry Smith /* Loop Over B */ 8590bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 860596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8610bdbc534SSatish Balay row = i + rstart; 8620bdbc534SSatish Balay col = garray[bj[j]]; 863187ce0cbSSatish Balay key = row * Nbs + col + 1; 864fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 865fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 866fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 867fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 868fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 869596b8d2eSBarry Smith break; 8706cf91177SBarry Smith #if defined(PETSC_USE_INFO) 871187ce0cbSSatish Balay } else { 872187ce0cbSSatish Balay ct++; 873187ce0cbSSatish Balay #endif 874596b8d2eSBarry Smith } 875187ce0cbSSatish Balay } 8766cf91177SBarry Smith #if defined(PETSC_USE_INFO) 877187ce0cbSSatish Balay if (k > max) max = k; 878187ce0cbSSatish Balay #endif 879596b8d2eSBarry Smith } 880596b8d2eSBarry Smith } 881596b8d2eSBarry Smith 882596b8d2eSBarry Smith /* Print Summary */ 8836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 884fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 88526fbe8dcSKarl Rupp if (HT[i]) j++; 886c38d4ed2SBarry Smith } 8879566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 888187ce0cbSSatish Balay #endif 8893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 890596b8d2eSBarry Smith } 89157b952d6SSatish Balay 89266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 893d71ae5a4SJacob Faibussowitsch { 894bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 895b24ad042SBarry Smith PetscInt nstash, reallocs; 896bbb85fb3SSatish Balay 897bbb85fb3SSatish Balay PetscFunctionBegin; 8983ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 899bbb85fb3SSatish Balay 9009566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 9019566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 9029566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 9039566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 9049566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 9063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 907bbb85fb3SSatish Balay } 908bbb85fb3SSatish Balay 90966976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 910d71ae5a4SJacob Faibussowitsch { 911bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 91291c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 913b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 914e44c0bd4SBarry Smith PetscInt *row, *col; 915ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9163eda8832SBarry Smith MatScalar *val; 917b24ad042SBarry Smith PetscMPIInt n; 918bbb85fb3SSatish Balay 919bbb85fb3SSatish Balay PetscFunctionBegin; 9205fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9214cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 922a2d1c673SSatish Balay while (1) { 9239566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 924a2d1c673SSatish Balay if (!flg) break; 925a2d1c673SSatish Balay 926bbb85fb3SSatish Balay for (i = 0; i < n;) { 927bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92826fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92926fbe8dcSKarl Rupp if (row[j] != rstart) break; 93026fbe8dcSKarl Rupp } 931bbb85fb3SSatish Balay if (j < n) ncols = j - i; 932bbb85fb3SSatish Balay else ncols = n - i; 933bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9349566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 935bbb85fb3SSatish Balay i = j; 936bbb85fb3SSatish Balay } 937bbb85fb3SSatish Balay } 9389566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 939a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9405e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 941a2d1c673SSatish Balay restore the original flags */ 942a2d1c673SSatish Balay r1 = baij->roworiented; 943a2d1c673SSatish Balay r2 = a->roworiented; 94491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 94526fbe8dcSKarl Rupp 9467c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9477c922b88SBarry Smith a->roworiented = PETSC_FALSE; 948f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 949a2d1c673SSatish Balay while (1) { 9509566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 951a2d1c673SSatish Balay if (!flg) break; 952a2d1c673SSatish Balay 953a2d1c673SSatish Balay for (i = 0; i < n;) { 954a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 95526fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 95626fbe8dcSKarl Rupp if (row[j] != rstart) break; 95726fbe8dcSKarl Rupp } 958a2d1c673SSatish Balay if (j < n) ncols = j - i; 959a2d1c673SSatish Balay else ncols = n - i; 9609566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 961a2d1c673SSatish Balay i = j; 962a2d1c673SSatish Balay } 963a2d1c673SSatish Balay } 9649566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 96526fbe8dcSKarl Rupp 966a2d1c673SSatish Balay baij->roworiented = r1; 967a2d1c673SSatish Balay a->roworiented = r2; 9685e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 969bbb85fb3SSatish Balay } 970bbb85fb3SSatish Balay 9719566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9729566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 973bbb85fb3SSatish Balay 974bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9756aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 976bbb85fb3SSatish Balay /* 977bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 978bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 979bbb85fb3SSatish Balay */ 980bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9815f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 98248a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 983bbb85fb3SSatish Balay } 984bbb85fb3SSatish Balay 98548a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 988bbb85fb3SSatish Balay 9896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 990bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 99226fbe8dcSKarl Rupp 993bbb85fb3SSatish Balay baij->ht_total_ct = 0; 994bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 995bbb85fb3SSatish Balay } 996bbb85fb3SSatish Balay #endif 997bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9989566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99926fbe8dcSKarl Rupp 1000bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1001bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1002bbb85fb3SSatish Balay } 1003bbb85fb3SSatish Balay 10049566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 100526fbe8dcSKarl Rupp 1006f4259b30SLisandro Dalcin baij->rowvalues = NULL; 10074f9cfa9eSBarry Smith 10084f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 1009f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 1010e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 10111c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1012e56f5c9eSBarry Smith } 10133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1014bbb85fb3SSatish Balay } 101557b952d6SSatish Balay 10167da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10179804daf3SBarry Smith #include <petscdraw.h> 1018d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1019d71ae5a4SJacob Faibussowitsch { 102057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10217da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1022d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1023ace3abfcSBarry Smith PetscBool iascii, isdraw; 1024b0a32e0cSBarry Smith PetscViewer sviewer; 1025f3ef73ceSBarry Smith PetscViewerFormat format; 102657b952d6SSatish Balay 1027d64ed03dSBarry Smith PetscFunctionBegin; 10289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 103032077d6dSBarry Smith if (iascii) { 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1032456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10334e220ebcSLois Curfman McInnes MatInfo info; 10349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10359566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10379371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10389371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10399566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10419566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10439566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10469566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1048fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105104929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105357b952d6SSatish Balay } 105457b952d6SSatish Balay } 105557b952d6SSatish Balay 10560f5bd95cSBarry Smith if (isdraw) { 1057b0a32e0cSBarry Smith PetscDraw draw; 1058ace3abfcSBarry Smith PetscBool isnull; 10599566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10609566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10613ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 106257b952d6SSatish Balay } 106357b952d6SSatish Balay 10647da1fb6eSBarry Smith { 106557b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 106657b952d6SSatish Balay Mat A; 106757b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1068d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10693eda8832SBarry Smith MatScalar *a; 10703e219373SBarry Smith const char *matname; 107157b952d6SSatish Balay 1072f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1073f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10749566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1075dd400576SPatrick Sanan if (rank == 0) { 10769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1077d64ed03dSBarry Smith } else { 10789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 107957b952d6SSatish Balay } 10809566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10819566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10829566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 108357b952d6SSatish Balay 108457b952d6SSatish Balay /* copy over the A part */ 108557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10869371c9d4SSatish Balay ai = Aloc->i; 10879371c9d4SSatish Balay aj = Aloc->j; 10889371c9d4SSatish Balay a = Aloc->a; 10899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 109057b952d6SSatish Balay 109157b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1092899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 109326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 109457b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1095899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 109657b952d6SSatish Balay for (k = 0; k < bs; k++) { 10979566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10989371c9d4SSatish Balay col++; 10999371c9d4SSatish Balay a += bs; 110057b952d6SSatish Balay } 110157b952d6SSatish Balay } 110257b952d6SSatish Balay } 110357b952d6SSatish Balay /* copy over the B part */ 110457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 11059371c9d4SSatish Balay ai = Aloc->i; 11069371c9d4SSatish Balay aj = Aloc->j; 11079371c9d4SSatish Balay a = Aloc->a; 110857b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1109899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 111026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 111157b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 111257b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 111357b952d6SSatish Balay for (k = 0; k < bs; k++) { 11149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11159371c9d4SSatish Balay col++; 11169371c9d4SSatish Balay a += bs; 111757b952d6SSatish Balay } 111857b952d6SSatish Balay } 111957b952d6SSatish Balay } 11209566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 112355843e3eSBarry Smith /* 112455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1125b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 112655843e3eSBarry Smith */ 11279566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 112823a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1129dd400576SPatrick Sanan if (rank == 0) { 1130f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1131f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 113257b952d6SSatish Balay } 11339566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 113557b952d6SSatish Balay } 11363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113757b952d6SSatish Balay } 113857b952d6SSatish Balay 1139618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1141d71ae5a4SJacob Faibussowitsch { 1142b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1143b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1144b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1145b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 114617a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 114717a3732bSBarry Smith PetscInt64 nz, hnz; 1148b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1149b51a4376SLisandro Dalcin PetscScalar *matvals; 115017a3732bSBarry Smith PetscMPIInt rank; 1151660746e0SBarry Smith 1152660746e0SBarry Smith PetscFunctionBegin; 11539566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1154b51a4376SLisandro Dalcin 1155b51a4376SLisandro Dalcin M = mat->rmap->N; 1156b51a4376SLisandro Dalcin N = mat->cmap->N; 1157b51a4376SLisandro Dalcin m = mat->rmap->n; 1158b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1159b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1160b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1161b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1162b51a4376SLisandro Dalcin 1163b51a4376SLisandro Dalcin /* write matrix header */ 1164660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11659371c9d4SSatish Balay header[1] = M; 11669371c9d4SSatish Balay header[2] = N; 116717a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 116817a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 116917a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11709566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1171660746e0SBarry Smith 1172b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1174b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11759371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11769566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11779566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1178660746e0SBarry Smith 1179b51a4376SLisandro Dalcin /* fill in and store column indices */ 11809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1181b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1182b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1183b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1184b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11859371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1186660746e0SBarry Smith } 1187b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11889371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1189b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11909371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1191660746e0SBarry Smith } 1192660746e0SBarry Smith } 119317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 11949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11959566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1196660746e0SBarry Smith 1197b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1199b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1200b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1201b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1202b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 12039371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1204660746e0SBarry Smith } 1205b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 12069371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1207b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 12089371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1209660746e0SBarry Smith } 1210b51a4376SLisandro Dalcin } 12119566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12129566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1213660746e0SBarry Smith 1214b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12159566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1217660746e0SBarry Smith } 1218660746e0SBarry Smith 1219d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1220d71ae5a4SJacob Faibussowitsch { 1221ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 122257b952d6SSatish Balay 1223d64ed03dSBarry Smith PetscFunctionBegin; 12249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12269566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1228660746e0SBarry Smith if (iascii || isdraw || issocket) { 12299566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12301baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 123257b952d6SSatish Balay } 123357b952d6SSatish Balay 123466976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1235d71ae5a4SJacob Faibussowitsch { 1236cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1237b24ad042SBarry Smith PetscInt nt; 1238cee3aa6bSSatish Balay 1239d64ed03dSBarry Smith PetscFunctionBegin; 12409566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12415f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12429566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1243da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12459566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12479566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1249cee3aa6bSSatish Balay } 1250cee3aa6bSSatish Balay 125166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1252d71ae5a4SJacob Faibussowitsch { 1253cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1254d64ed03dSBarry Smith 1255d64ed03dSBarry Smith PetscFunctionBegin; 12569566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12579566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12589566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12599566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1261cee3aa6bSSatish Balay } 1262cee3aa6bSSatish Balay 126366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1264d71ae5a4SJacob Faibussowitsch { 1265cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1266cee3aa6bSSatish Balay 1267d64ed03dSBarry Smith PetscFunctionBegin; 1268cee3aa6bSSatish Balay /* do nondiagonal part */ 12699566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1270cee3aa6bSSatish Balay /* do local part */ 12719566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1272e4a140f6SJunchao Zhang /* add partial results together */ 12739566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12749566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1276cee3aa6bSSatish Balay } 1277cee3aa6bSSatish Balay 127866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1279d71ae5a4SJacob Faibussowitsch { 1280cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1281cee3aa6bSSatish Balay 1282d64ed03dSBarry Smith PetscFunctionBegin; 1283cee3aa6bSSatish Balay /* do nondiagonal part */ 12849566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1285cee3aa6bSSatish Balay /* do local part */ 12869566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1287e4a140f6SJunchao Zhang /* add partial results together */ 12889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12899566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1291cee3aa6bSSatish Balay } 1292cee3aa6bSSatish Balay 1293cee3aa6bSSatish Balay /* 1294cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1295cee3aa6bSSatish Balay diagonal block 1296cee3aa6bSSatish Balay */ 129766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1298d71ae5a4SJacob Faibussowitsch { 1299d64ed03dSBarry Smith PetscFunctionBegin; 13005f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 13019566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 13023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1303cee3aa6bSSatish Balay } 1304cee3aa6bSSatish Balay 130566976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1306d71ae5a4SJacob Faibussowitsch { 1307cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1308d64ed03dSBarry Smith 1309d64ed03dSBarry Smith PetscFunctionBegin; 13109566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13119566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1313cee3aa6bSSatish Balay } 1314026e39d0SSatish Balay 1315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1316d71ae5a4SJacob Faibussowitsch { 1317acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 131887828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1319d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1320d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1321899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1322acdf5bf4SSatish Balay 1323d64ed03dSBarry Smith PetscFunctionBegin; 13245f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13255f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1326acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1327acdf5bf4SSatish Balay 1328acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1329acdf5bf4SSatish Balay /* 1330acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1331acdf5bf4SSatish Balay */ 1332acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1333b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1334bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1335acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 133626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1337acdf5bf4SSatish Balay } 13389566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1339acdf5bf4SSatish Balay } 1340d9d09a02SSatish Balay lrow = row - brstart; 1341acdf5bf4SSatish Balay 13429371c9d4SSatish Balay pvA = &vworkA; 13439371c9d4SSatish Balay pcA = &cworkA; 13449371c9d4SSatish Balay pvB = &vworkB; 13459371c9d4SSatish Balay pcB = &cworkB; 13469371c9d4SSatish Balay if (!v) { 13479371c9d4SSatish Balay pvA = NULL; 13489371c9d4SSatish Balay pvB = NULL; 13499371c9d4SSatish Balay } 13509371c9d4SSatish Balay if (!idx) { 13519371c9d4SSatish Balay pcA = NULL; 13529371c9d4SSatish Balay if (!v) pcB = NULL; 13539371c9d4SSatish Balay } 13549566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13559566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1356acdf5bf4SSatish Balay nztot = nzA + nzB; 1357acdf5bf4SSatish Balay 1358acdf5bf4SSatish Balay cmap = mat->garray; 1359acdf5bf4SSatish Balay if (v || idx) { 1360acdf5bf4SSatish Balay if (nztot) { 1361acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1362b24ad042SBarry Smith PetscInt imark = -1; 1363acdf5bf4SSatish Balay if (v) { 1364acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1365acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1366d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1367acdf5bf4SSatish Balay else break; 1368acdf5bf4SSatish Balay } 1369acdf5bf4SSatish Balay imark = i; 1370acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1371acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1372acdf5bf4SSatish Balay } 1373acdf5bf4SSatish Balay if (idx) { 1374acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1375acdf5bf4SSatish Balay if (imark > -1) { 1376ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1377acdf5bf4SSatish Balay } else { 1378acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 137926fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1380acdf5bf4SSatish Balay else break; 1381acdf5bf4SSatish Balay } 1382acdf5bf4SSatish Balay imark = i; 1383acdf5bf4SSatish Balay } 1384d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1385d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1386acdf5bf4SSatish Balay } 1387d64ed03dSBarry Smith } else { 1388f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1389f4259b30SLisandro Dalcin if (v) *v = NULL; 1390d212a18eSSatish Balay } 1391acdf5bf4SSatish Balay } 1392acdf5bf4SSatish Balay *nz = nztot; 13939566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13949566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1396acdf5bf4SSatish Balay } 1397acdf5bf4SSatish Balay 1398d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1399d71ae5a4SJacob Faibussowitsch { 1400acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1401d64ed03dSBarry Smith 1402d64ed03dSBarry Smith PetscFunctionBegin; 14035f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1404acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1406acdf5bf4SSatish Balay } 1407acdf5bf4SSatish Balay 140866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1409d71ae5a4SJacob Faibussowitsch { 141058667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1411d64ed03dSBarry Smith 1412d64ed03dSBarry Smith PetscFunctionBegin; 14139566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14149566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 141658667388SSatish Balay } 14170ac07820SSatish Balay 141866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1419d71ae5a4SJacob Faibussowitsch { 14204e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14214e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14223966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14230ac07820SSatish Balay 1424d64ed03dSBarry Smith PetscFunctionBegin; 1425d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 142626fbe8dcSKarl Rupp 14279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 142826fbe8dcSKarl Rupp 14299371c9d4SSatish Balay isend[0] = info->nz_used; 14309371c9d4SSatish Balay isend[1] = info->nz_allocated; 14319371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14329371c9d4SSatish Balay isend[3] = info->memory; 14339371c9d4SSatish Balay isend[4] = info->mallocs; 143426fbe8dcSKarl Rupp 14359566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 143626fbe8dcSKarl Rupp 14379371c9d4SSatish Balay isend[0] += info->nz_used; 14389371c9d4SSatish Balay isend[1] += info->nz_allocated; 14399371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14409371c9d4SSatish Balay isend[3] += info->memory; 14419371c9d4SSatish Balay isend[4] += info->mallocs; 144226fbe8dcSKarl Rupp 14430ac07820SSatish Balay if (flag == MAT_LOCAL) { 14444e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14454e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14464e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14474e220ebcSLois Curfman McInnes info->memory = isend[3]; 14484e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14490ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 145126fbe8dcSKarl Rupp 14524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14570ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14581c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 145926fbe8dcSKarl Rupp 14604e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14614e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14624e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14634e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14644e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 146598921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14664e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14674e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14684e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14700ac07820SSatish Balay } 14710ac07820SSatish Balay 147266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1473d71ae5a4SJacob Faibussowitsch { 147458667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 147558667388SSatish Balay 1476d64ed03dSBarry Smith PetscFunctionBegin; 147712c028f9SKris Buschelman switch (op) { 1478512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 148028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1481a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 148212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 148343674050SBarry Smith MatCheckPreallocated(A, 1); 14849566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14859566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148612c028f9SKris Buschelman break; 148712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148843674050SBarry Smith MatCheckPreallocated(A, 1); 14894e0d8c25SBarry Smith a->roworiented = flg; 149026fbe8dcSKarl Rupp 14919566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14929566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 149312c028f9SKris Buschelman break; 14948c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1495d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1496d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1497d71ae5a4SJacob Faibussowitsch break; 1498d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1499d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1500d71ae5a4SJacob Faibussowitsch break; 150112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15024e0d8c25SBarry Smith a->ht_flag = flg; 1503abf3b562SBarry Smith a->ht_fact = 1.39; 150412c028f9SKris Buschelman break; 150577e54ba9SKris Buschelman case MAT_SYMMETRIC: 150677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15072188ac68SBarry Smith case MAT_HERMITIAN: 1508c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15092188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1510b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1511b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1512b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 151377e54ba9SKris Buschelman break; 1514d71ae5a4SJacob Faibussowitsch default: 1515d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1516d64ed03dSBarry Smith } 15173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151858667388SSatish Balay } 151958667388SSatish Balay 152066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1521d71ae5a4SJacob Faibussowitsch { 15220ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15230ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15240ac07820SSatish Balay Mat B; 1525d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1526d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15273eda8832SBarry Smith MatScalar *a; 15280ac07820SSatish Balay 1529d64ed03dSBarry Smith PetscFunctionBegin; 15307fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1531cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15329566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15349566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15352e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15369566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1537fc4dec0aSBarry Smith } else { 1538fc4dec0aSBarry Smith B = *matout; 1539fc4dec0aSBarry Smith } 15400ac07820SSatish Balay 15410ac07820SSatish Balay /* copy over the A part */ 15420ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15439371c9d4SSatish Balay ai = Aloc->i; 15449371c9d4SSatish Balay aj = Aloc->j; 15459371c9d4SSatish Balay a = Aloc->a; 15469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15470ac07820SSatish Balay 15480ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1549899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15510ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1552899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15530ac07820SSatish Balay for (k = 0; k < bs; k++) { 15549566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155526fbe8dcSKarl Rupp 15569371c9d4SSatish Balay col++; 15579371c9d4SSatish Balay a += bs; 15580ac07820SSatish Balay } 15590ac07820SSatish Balay } 15600ac07820SSatish Balay } 15610ac07820SSatish Balay /* copy over the B part */ 15620ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15639371c9d4SSatish Balay ai = Aloc->i; 15649371c9d4SSatish Balay aj = Aloc->j; 15659371c9d4SSatish Balay a = Aloc->a; 15660ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1567899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 156826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15690ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15700ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15710ac07820SSatish Balay for (k = 0; k < bs; k++) { 15729566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 157326fbe8dcSKarl Rupp col++; 157426fbe8dcSKarl Rupp a += bs; 15750ac07820SSatish Balay } 15760ac07820SSatish Balay } 15770ac07820SSatish Balay } 15789566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15810ac07820SSatish Balay 1582cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 158348a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15850ac07820SSatish Balay } 15860e95ebc0SSatish Balay 158766976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1588d71ae5a4SJacob Faibussowitsch { 158936c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 159036c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1591b24ad042SBarry Smith PetscInt s1, s2, s3; 15920e95ebc0SSatish Balay 1593d64ed03dSBarry Smith PetscFunctionBegin; 15949566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 159536c4a09eSSatish Balay if (rr) { 15969566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15975f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 159836c4a09eSSatish Balay /* Overlap communication with computation. */ 15999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 160036c4a09eSSatish Balay } 16010e95ebc0SSatish Balay if (ll) { 16029566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 16035f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1604dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16050e95ebc0SSatish Balay } 160636c4a09eSSatish Balay /* scale the diagonal block */ 1607dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 160836c4a09eSSatish Balay 160936c4a09eSSatish Balay if (rr) { 161036c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 16119566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1612dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 161336c4a09eSSatish Balay } 16143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16150e95ebc0SSatish Balay } 16160e95ebc0SSatish Balay 161766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1618d71ae5a4SJacob Faibussowitsch { 16190ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 162065a92638SMatthew G. Knepley PetscInt *lrows; 16216e520ac8SStefano Zampini PetscInt r, len; 162294342113SStefano Zampini PetscBool cong; 16230ac07820SSatish Balay 1624d64ed03dSBarry Smith PetscFunctionBegin; 16256e520ac8SStefano Zampini /* get locally owned rows */ 16269566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1627dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 162897b48c8fSBarry Smith if (x && b) { 162965a92638SMatthew G. Knepley const PetscScalar *xx; 163065a92638SMatthew G. Knepley PetscScalar *bb; 163165a92638SMatthew G. Knepley 16329566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16339566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 163465a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 163797b48c8fSBarry Smith } 163897b48c8fSBarry Smith 16390ac07820SSatish Balay /* actually zap the local rows */ 164072dacd9aSBarry Smith /* 164172dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1642a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 164372dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 164472dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 164572dacd9aSBarry Smith 164672dacd9aSBarry Smith */ 16479c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16489566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16499566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 165094342113SStefano Zampini if ((diag != 0.0) && cong) { 16519566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1652f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16539566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 165400045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 165565a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 165665a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16579566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1658a07cd24cSSatish Balay } 16599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16619c957beeSSatish Balay } else { 16629566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1663a07cd24cSSatish Balay } 16649566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16654f9cfa9eSBarry Smith 16664f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1667f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1668e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16691c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1670e56f5c9eSBarry Smith } 16713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16720ac07820SSatish Balay } 167372dacd9aSBarry Smith 167466976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1675d71ae5a4SJacob Faibussowitsch { 16766f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1677131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1678131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16796f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16806f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16816f0a72daSMatthew G. Knepley PetscSF sf; 16826f0a72daSMatthew G. Knepley const PetscScalar *xx; 16836f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16846f0a72daSMatthew G. Knepley Vec xmask, lmask; 16856f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16866f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16876f0a72daSMatthew G. Knepley PetscScalar *aa; 16886f0a72daSMatthew G. Knepley 16896f0a72daSMatthew G. Knepley PetscFunctionBegin; 16906f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16926f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16946f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16956f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16965f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16975ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16989566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16995ba17502SJed Brown } 17006f0a72daSMatthew G. Knepley rrows[r].rank = p; 17016f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 17026f0a72daSMatthew G. Knepley } 17039566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 17049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 17056f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17069566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17079566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17089566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 17096f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17109371c9d4SSatish Balay for (r = 0; r < n; ++r) 17119371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17126f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17139566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17144cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 17159566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17169566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17179566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17186f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17236f0a72daSMatthew G. Knepley if (x) { 17249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17269566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17279566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17286f0a72daSMatthew G. Knepley } 17299566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17304cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17316f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17326f0a72daSMatthew G. Knepley row = lrows[i]; 17336f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1734f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs); 17356f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17366f0a72daSMatthew G. Knepley aa[0] = 0.0; 17376f0a72daSMatthew G. Knepley aa += bs; 17386f0a72daSMatthew G. Knepley } 17396f0a72daSMatthew G. Knepley } 17406f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17416f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17426f0a72daSMatthew G. Knepley row = i / bs; 17436f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17446f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17456f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17466f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1747f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k; 174889ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17496f0a72daSMatthew G. Knepley aa[0] = 0.0; 17506f0a72daSMatthew G. Knepley } 17516f0a72daSMatthew G. Knepley } 17526f0a72daSMatthew G. Knepley } 17536f0a72daSMatthew G. Knepley } 17546f0a72daSMatthew G. Knepley if (x) { 17559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17576f0a72daSMatthew G. Knepley } 17589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17609566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17614f9cfa9eSBarry Smith 17624f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1763f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17644f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17651c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17664f9cfa9eSBarry Smith } 17673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17686f0a72daSMatthew G. Knepley } 17696f0a72daSMatthew G. Knepley 177066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1771d71ae5a4SJacob Faibussowitsch { 1772bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1773d64ed03dSBarry Smith 1774d64ed03dSBarry Smith PetscFunctionBegin; 17759566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1777bb5a7306SBarry Smith } 1778bb5a7306SBarry Smith 17796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17800ac07820SSatish Balay 178166976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1782d71ae5a4SJacob Faibussowitsch { 17837fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17847fc3c18eSBarry Smith Mat a, b, c, d; 1785ace3abfcSBarry Smith PetscBool flg; 17867fc3c18eSBarry Smith 17877fc3c18eSBarry Smith PetscFunctionBegin; 17889371c9d4SSatish Balay a = matA->A; 17899371c9d4SSatish Balay b = matA->B; 17909371c9d4SSatish Balay c = matB->A; 17919371c9d4SSatish Balay d = matB->B; 17927fc3c18eSBarry Smith 17939566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 179448a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17951c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17977fc3c18eSBarry Smith } 17987fc3c18eSBarry Smith 179966976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1800d71ae5a4SJacob Faibussowitsch { 18013c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 18023c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 18033c896bc6SHong Zhang 18043c896bc6SHong Zhang PetscFunctionBegin; 18053c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18063c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18079566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 18083c896bc6SHong Zhang } else { 18099566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 18109566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18113c896bc6SHong Zhang } 18129566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18143c896bc6SHong Zhang } 1815273d9f13SBarry Smith 1816d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1817d71ae5a4SJacob Faibussowitsch { 1818001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18194de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18204de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18214de5dceeSHong Zhang 18224de5dceeSHong Zhang PetscFunctionBegin; 18239566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18254de5dceeSHong Zhang } 18264de5dceeSHong Zhang 182766976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1828d71ae5a4SJacob Faibussowitsch { 18294fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18304fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18314fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1832b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18334fe895cdSHong Zhang 18344fe895cdSHong Zhang PetscFunctionBegin; 18354fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18364fe895cdSHong Zhang PetscScalar alpha = a; 18374fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18384fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18399566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1840792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18414fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18424fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18439566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1844792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18459566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1846ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18479566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18484fe895cdSHong Zhang } else { 18494de5dceeSHong Zhang Mat B; 18504de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18539566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18549566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18569566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18579566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18589566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18599566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18609566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18614de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18629566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18639566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18649566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18659566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18664fe895cdSHong Zhang } 18673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18684fe895cdSHong Zhang } 18694fe895cdSHong Zhang 187066976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1871d71ae5a4SJacob Faibussowitsch { 18725f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18735f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18742726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18752726fb6dSPierre Jolivet 18769566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18779566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18785f80ce2aSJacob Faibussowitsch } 18793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18802726fb6dSPierre Jolivet } 18812726fb6dSPierre Jolivet 188266976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1883d71ae5a4SJacob Faibussowitsch { 188499cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188599cafbc1SBarry Smith 188699cafbc1SBarry Smith PetscFunctionBegin; 18879566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18889566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189099cafbc1SBarry Smith } 189199cafbc1SBarry Smith 189266976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1893d71ae5a4SJacob Faibussowitsch { 189499cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 189599cafbc1SBarry Smith 189699cafbc1SBarry Smith PetscFunctionBegin; 18979566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18989566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 190099cafbc1SBarry Smith } 190199cafbc1SBarry Smith 190266976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1903d71ae5a4SJacob Faibussowitsch { 19044aa3045dSJed Brown IS iscol_local; 19054aa3045dSJed Brown PetscInt csize; 19064aa3045dSJed Brown 19074aa3045dSJed Brown PetscFunctionBegin; 19089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1909b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19109566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19115f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1912b79d0421SJed Brown } else { 19139566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1914b79d0421SJed Brown } 1915fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1916b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19179566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1919b79d0421SJed Brown } 19203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19214aa3045dSJed Brown } 192217df9f7cSHong Zhang 192382094794SBarry Smith /* 192482094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 192582094794SBarry Smith in local and then by concatenating the local matrices the end result. 19267dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19278f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192882094794SBarry Smith */ 1929fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1930d71ae5a4SJacob Faibussowitsch { 193182094794SBarry Smith PetscMPIInt rank, size; 193282094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1933c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 193429dcf524SDmitry Karpeev Mat M, Mreuse; 193582094794SBarry Smith MatScalar *vwork, *aa; 1936ce94432eSBarry Smith MPI_Comm comm; 193729dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193882094794SBarry Smith Mat_SeqBAIJ *aij; 193982094794SBarry Smith 194082094794SBarry Smith PetscFunctionBegin; 19419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 194429dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 194529dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19469566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1947864bd19bSPierre Jolivet if (isrow == iscol) { 1948864bd19bSPierre Jolivet iscol_new = isrow_new; 1949864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1950864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 195182094794SBarry Smith 195282094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19545f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1955fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 195682094794SBarry Smith } else { 1957fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 195882094794SBarry Smith } 19599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 196182094794SBarry Smith /* 196282094794SBarry Smith m - number of local rows 196382094794SBarry Smith n - number of columns (same on all processors) 196482094794SBarry Smith rstart - first row in new global matrix generated 196582094794SBarry Smith */ 19669566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19679566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 196882094794SBarry Smith m = m / bs; 196982094794SBarry Smith n = n / bs; 197082094794SBarry Smith 197182094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197282094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 197382094794SBarry Smith ii = aij->i; 197482094794SBarry Smith jj = aij->j; 197582094794SBarry Smith 197682094794SBarry Smith /* 197782094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 197882094794SBarry Smith portions of the matrix in order to do correct preallocation 197982094794SBarry Smith */ 198082094794SBarry Smith 198182094794SBarry Smith /* first get start and end of "diagonal" columns */ 198282094794SBarry Smith if (csize == PETSC_DECIDE) { 19839566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 198482094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 198582094794SBarry Smith nlocal = m; 198682094794SBarry Smith } else { 198782094794SBarry Smith nlocal = n / size + ((n % size) > rank); 198882094794SBarry Smith } 198982094794SBarry Smith } else { 199082094794SBarry Smith nlocal = csize / bs; 199182094794SBarry Smith } 19929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 199382094794SBarry Smith rstart = rend - nlocal; 1994aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 199582094794SBarry Smith 199682094794SBarry Smith /* next, compute all the lengths */ 19979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 199882094794SBarry Smith for (i = 0; i < m; i++) { 199982094794SBarry Smith jend = ii[i + 1] - ii[i]; 200082094794SBarry Smith olen = 0; 200182094794SBarry Smith dlen = 0; 200282094794SBarry Smith for (j = 0; j < jend; j++) { 200382094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 200482094794SBarry Smith else dlen++; 200582094794SBarry Smith jj++; 200682094794SBarry Smith } 200782094794SBarry Smith olens[i] = olen; 200882094794SBarry Smith dlens[i] = dlen; 200982094794SBarry Smith } 20109566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 2012fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 20139566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20149566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20159566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 201682094794SBarry Smith } else { 201782094794SBarry Smith PetscInt ml, nl; 201882094794SBarry Smith 201982094794SBarry Smith M = *newmat; 20209566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20215f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20229566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 202382094794SBarry Smith /* 202482094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 202582094794SBarry Smith rather than the slower MatSetValues(). 202682094794SBarry Smith */ 202782094794SBarry Smith M->was_assembled = PETSC_TRUE; 202882094794SBarry Smith M->assembled = PETSC_FALSE; 202982094794SBarry Smith } 20309566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20319566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 203282094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 203382094794SBarry Smith ii = aij->i; 203482094794SBarry Smith jj = aij->j; 203582094794SBarry Smith aa = aij->a; 203682094794SBarry Smith for (i = 0; i < m; i++) { 203782094794SBarry Smith row = rstart / bs + i; 203882094794SBarry Smith nz = ii[i + 1] - ii[i]; 20399371c9d4SSatish Balay cwork = jj; 20408e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20419371c9d4SSatish Balay vwork = aa; 20428e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20439566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 204482094794SBarry Smith } 204582094794SBarry Smith 20469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 204882094794SBarry Smith *newmat = M; 204982094794SBarry Smith 205082094794SBarry Smith /* save submatrix used in processor for next request */ 205182094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 205482094794SBarry Smith } 20553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 205682094794SBarry Smith } 205782094794SBarry Smith 205866976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2059d71ae5a4SJacob Faibussowitsch { 206082094794SBarry Smith MPI_Comm comm, pcomm; 2061a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 206282094794SBarry Smith const PetscInt *rows; 2063dbf0e21dSBarry Smith PetscMPIInt size; 2064a0a83eb5SRémi Lacroix IS crowp, lcolp; 206582094794SBarry Smith 206682094794SBarry Smith PetscFunctionBegin; 20679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 206882094794SBarry Smith /* make a collective version of 'rowp' */ 20699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 207082094794SBarry Smith if (pcomm == comm) { 207182094794SBarry Smith crowp = rowp; 207282094794SBarry Smith } else { 20739566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20749566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 207782094794SBarry Smith } 20789566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2079a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2082dbf0e21dSBarry Smith if (size == 1) { 208382094794SBarry Smith lcolp = colp; 208482094794SBarry Smith } else { 20859566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 208682094794SBarry Smith } 20879566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 208875f6568bSJed Brown /* now we just get the submatrix */ 20899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2090fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2091a0a83eb5SRémi Lacroix /* clean up */ 209248a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 209348a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 209582094794SBarry Smith } 209682094794SBarry Smith 209766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2098d71ae5a4SJacob Faibussowitsch { 20998c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 21008c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 21018c7482ecSBarry Smith 21028c7482ecSBarry Smith PetscFunctionBegin; 210326fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 210426fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 21053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21068c7482ecSBarry Smith } 21078c7482ecSBarry Smith 210866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2109d71ae5a4SJacob Faibussowitsch { 2110f6d58c54SBarry Smith Mat B; 2111f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2112f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2113f6d58c54SBarry Smith Mat_SeqAIJ *b; 2114f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2115f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2116f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2117f6d58c54SBarry Smith 2118f6d58c54SBarry Smith PetscFunctionBegin; 21199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2121f6d58c54SBarry Smith 21222ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2124ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2126f6d58c54SBarry Smith displs = recvcounts + size; 2127f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2128f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2129f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2130f6d58c54SBarry Smith } 21319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21322ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21339566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21349566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21359566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2137f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2138f6d58c54SBarry Smith 21392ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2140f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2141f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2142f6d58c54SBarry Smith a_jsendbuf = ad->j; 2143f6d58c54SBarry Smith b_jsendbuf = bd->j; 2144f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2145f6d58c54SBarry Smith cnt = 0; 2146f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2147f6d58c54SBarry Smith /* put in lower diagonal portion */ 2148f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2149f6d58c54SBarry Smith while (m > 0) { 2150f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2151f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2152f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2153f6d58c54SBarry Smith m--; 2154f6d58c54SBarry Smith } 2155f6d58c54SBarry Smith 2156f6d58c54SBarry Smith /* put in diagonal portion */ 2157ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2158f6d58c54SBarry Smith 2159f6d58c54SBarry Smith /* put in upper diagonal portion */ 2160ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2161f6d58c54SBarry Smith } 21625f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2163f6d58c54SBarry Smith 21642ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2165f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2166f6d58c54SBarry Smith recvcounts[i] = 0; 2167ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2168f6d58c54SBarry Smith } 2169f6d58c54SBarry Smith displs[0] = 0; 2170ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21725804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2173f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21749566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2175f6d58c54SBarry Smith /* set the b->i indices */ 2176f6d58c54SBarry Smith b->i[0] = 0; 2177ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21789566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21819566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2182f6d58c54SBarry Smith 2183b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2184f6d58c54SBarry Smith *newmat = B; 21853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2186f6d58c54SBarry Smith } 2187f6d58c54SBarry Smith 218866976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2189d71ae5a4SJacob Faibussowitsch { 2190b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2191f4259b30SLisandro Dalcin Vec bb1 = NULL; 2192b1a666ecSBarry Smith 2193b1a666ecSBarry Smith PetscFunctionBegin; 2194b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21959566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2197b1a666ecSBarry Smith } 2198b1a666ecSBarry Smith 219948a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 22004e980039SJed Brown 2201b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2202b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22039566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2204b1a666ecSBarry Smith its--; 2205b1a666ecSBarry Smith } 2206b1a666ecSBarry Smith 2207b1a666ecSBarry Smith while (its--) { 22089566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22099566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2210b1a666ecSBarry Smith 2211b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22129566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22139566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2214b1a666ecSBarry Smith 2215b1a666ecSBarry Smith /* local sweep */ 22169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2217b1a666ecSBarry Smith } 2218b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2219b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2221b1a666ecSBarry Smith its--; 2222b1a666ecSBarry Smith } 2223b1a666ecSBarry Smith while (its--) { 22249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2226b1a666ecSBarry Smith 2227b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22289566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22299566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2230b1a666ecSBarry Smith 2231b1a666ecSBarry Smith /* local sweep */ 22329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2233b1a666ecSBarry Smith } 2234b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2235b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22369566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2237b1a666ecSBarry Smith its--; 2238b1a666ecSBarry Smith } 2239b1a666ecSBarry Smith while (its--) { 22409566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22419566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2242b1a666ecSBarry Smith 2243b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22449566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22459566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2246b1a666ecSBarry Smith 2247b1a666ecSBarry Smith /* local sweep */ 22489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2249b1a666ecSBarry Smith } 2250ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2251b1a666ecSBarry Smith 22529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2254b1a666ecSBarry Smith } 2255b1a666ecSBarry Smith 225666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2257d71ae5a4SJacob Faibussowitsch { 225847f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2259a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 226047f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 226147f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 226247f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 226347f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 226447f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 226547f7623dSRémi Lacroix PetscReal *work; 226647f7623dSRémi Lacroix 226747f7623dSRémi Lacroix PetscFunctionBegin; 22689566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22699566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2270857cbf51SRichard Tran Mills if (type == NORM_2) { 227147f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227447f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 227547f7623dSRémi Lacroix a_val++; 227647f7623dSRémi Lacroix } 227747f7623dSRémi Lacroix } 227847f7623dSRémi Lacroix } 227947f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228247f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 228347f7623dSRémi Lacroix b_val++; 228447f7623dSRémi Lacroix } 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix } 2287857cbf51SRichard Tran Mills } else if (type == NORM_1) { 228847f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229147f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 229247f7623dSRémi Lacroix a_val++; 229347f7623dSRémi Lacroix } 229447f7623dSRémi Lacroix } 229547f7623dSRémi Lacroix } 229647f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229947f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 230047f7623dSRémi Lacroix b_val++; 230147f7623dSRémi Lacroix } 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix } 2304857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 230547f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 230647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230847f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 230947f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 231047f7623dSRémi Lacroix a_val++; 231147f7623dSRémi Lacroix } 231247f7623dSRémi Lacroix } 231347f7623dSRémi Lacroix } 231447f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 231547f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 231647f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 231747f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 231847f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 231947f7623dSRémi Lacroix b_val++; 232047f7623dSRémi Lacroix } 232147f7623dSRémi Lacroix } 232247f7623dSRémi Lacroix } 2323857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2324a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2325a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2326a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2327857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2328a873a8cdSSam Reynolds a_val++; 2329a873a8cdSSam Reynolds } 2330a873a8cdSSam Reynolds } 2331a873a8cdSSam Reynolds } 2332a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2333a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2334a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2335857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2336a873a8cdSSam Reynolds b_val++; 2337a873a8cdSSam Reynolds } 2338a873a8cdSSam Reynolds } 2339a873a8cdSSam Reynolds } 2340857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2341857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2342857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2343857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2344857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2345857cbf51SRichard Tran Mills a_val++; 2346857cbf51SRichard Tran Mills } 2347857cbf51SRichard Tran Mills } 2348857cbf51SRichard Tran Mills } 2349857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2350857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2351857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2352857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2353857cbf51SRichard Tran Mills b_val++; 2354857cbf51SRichard Tran Mills } 2355857cbf51SRichard Tran Mills } 2356857cbf51SRichard Tran Mills } 2357857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2358857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23591c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 236047f7623dSRémi Lacroix } else { 23611c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 236247f7623dSRémi Lacroix } 23639566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2364857cbf51SRichard Tran Mills if (type == NORM_2) { 2365a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2366857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2367a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 236847f7623dSRémi Lacroix } 23693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 237047f7623dSRémi Lacroix } 237147f7623dSRémi Lacroix 237266976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2373d71ae5a4SJacob Faibussowitsch { 2374bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2375bbead8a2SBarry Smith 2376bbead8a2SBarry Smith PetscFunctionBegin; 23779566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23787b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23797b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23807b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2382bbead8a2SBarry Smith } 2383bbead8a2SBarry Smith 238466976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2385d71ae5a4SJacob Faibussowitsch { 23867d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23876f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23887d68702bSBarry Smith 23897d68702bSBarry Smith PetscFunctionBegin; 23906f33a894SBarry Smith if (!Y->preallocated) { 23919566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23926f33a894SBarry Smith } else if (!aij->nz) { 2393b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23949566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2395b83222d8SBarry Smith aij->nonew = nonew; 23967d68702bSBarry Smith } 23979566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23997d68702bSBarry Smith } 24008c7482ecSBarry Smith 240166976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2402d71ae5a4SJacob Faibussowitsch { 24033b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 24043b49f96aSBarry Smith 24053b49f96aSBarry Smith PetscFunctionBegin; 24065f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 24079566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 24083b49f96aSBarry Smith if (d) { 24093b49f96aSBarry Smith PetscInt rstart; 24109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24113b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24123b49f96aSBarry Smith } 24133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24143b49f96aSBarry Smith } 24153b49f96aSBarry Smith 241666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2417d71ae5a4SJacob Faibussowitsch { 2418a5b7ff6bSBarry Smith PetscFunctionBegin; 2419a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2421a5b7ff6bSBarry Smith } 2422a5b7ff6bSBarry Smith 242317ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 242417ea310bSPierre Jolivet { 242517ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 242617ea310bSPierre Jolivet 242717ea310bSPierre Jolivet PetscFunctionBegin; 242817ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 242917ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 243017ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 243117ea310bSPierre Jolivet } 243217ea310bSPierre Jolivet 24333964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2434cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2435cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2436cc2dc46cSBarry Smith MatMult_MPIBAIJ, 243797304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24387c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24397c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2440f4259b30SLisandro Dalcin NULL, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 2443f4259b30SLisandro Dalcin /*10*/ NULL, 2444f4259b30SLisandro Dalcin NULL, 2445f4259b30SLisandro Dalcin NULL, 2446b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2447cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244897304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24497fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2450cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2451cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2452cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 245397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2454cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2455cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2456cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2457d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2458f4259b30SLisandro Dalcin NULL, 2459f4259b30SLisandro Dalcin NULL, 2460f4259b30SLisandro Dalcin NULL, 2461f4259b30SLisandro Dalcin NULL, 246226cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2463f4259b30SLisandro Dalcin NULL, 2464f4259b30SLisandro Dalcin NULL, 2465a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2466f4259b30SLisandro Dalcin NULL, 2467d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2468f4259b30SLisandro Dalcin NULL, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin NULL, 2471f4259b30SLisandro Dalcin NULL, 2472d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24737dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2474cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2475cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24763c896bc6SHong Zhang MatCopy_MPIBAIJ, 2477f4259b30SLisandro Dalcin /*44*/ NULL, 2478cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24797d68702bSBarry Smith MatShift_MPIBAIJ, 2480f4259b30SLisandro Dalcin NULL, 24816f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2482f4259b30SLisandro Dalcin /*49*/ NULL, 2483f4259b30SLisandro Dalcin NULL, 2484f4259b30SLisandro Dalcin NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 248793dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2488f4259b30SLisandro Dalcin NULL, 2489cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 249082094794SBarry Smith MatPermute_MPIBAIJ, 2491cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24927dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2493f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2494f14a1c24SBarry Smith MatView_MPIBAIJ, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin /*64*/ NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin /*74*/ NULL, 2508f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin /*79*/ NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 25165bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2517f4259b30SLisandro Dalcin /*84*/ NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin /*89*/ NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin /*94*/ NULL, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin NULL, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin NULL, 2532f4259b30SLisandro Dalcin /*99*/ NULL, 2533f4259b30SLisandro Dalcin NULL, 2534f4259b30SLisandro Dalcin NULL, 25352726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin /*104*/ NULL, 253899cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25398c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2540f4259b30SLisandro Dalcin NULL, 2541f4259b30SLisandro Dalcin NULL, 2542f4259b30SLisandro Dalcin /*109*/ NULL, 2543f4259b30SLisandro Dalcin NULL, 2544f4259b30SLisandro Dalcin NULL, 2545f4259b30SLisandro Dalcin NULL, 25463b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2547d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2548f4259b30SLisandro Dalcin NULL, 25494683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin NULL, 2552f4259b30SLisandro Dalcin /*119*/ NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin NULL, 2555f4259b30SLisandro Dalcin NULL, 2556e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2557f4259b30SLisandro Dalcin /*124*/ NULL, 2558a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25593964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin NULL, 2562f4259b30SLisandro Dalcin /*129*/ NULL, 2563f4259b30SLisandro Dalcin NULL, 2564f4259b30SLisandro Dalcin NULL, 2565f4259b30SLisandro Dalcin NULL, 2566f4259b30SLisandro Dalcin NULL, 2567f4259b30SLisandro Dalcin /*134*/ NULL, 2568f4259b30SLisandro Dalcin NULL, 2569f4259b30SLisandro Dalcin NULL, 2570f4259b30SLisandro Dalcin NULL, 2571f4259b30SLisandro Dalcin NULL, 257246533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2573f4259b30SLisandro Dalcin NULL, 2574f4259b30SLisandro Dalcin NULL, 2575bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2576f4259b30SLisandro Dalcin NULL, 2577d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2578d70f29a3SPierre Jolivet NULL, 2579d70f29a3SPierre Jolivet NULL, 258099a7f59eSMark Adams NULL, 258199a7f59eSMark Adams NULL, 25827fb60732SBarry Smith NULL, 2583dec0b466SHong Zhang /*150*/ NULL, 2584eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 2585*c7b600bfSPierre Jolivet MatGetRowSumAbs_MPIBAIJ}; 258679bdfe76SSatish Balay 2587cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2588c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2589d94109b8SHong Zhang 259066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2591d71ae5a4SJacob Faibussowitsch { 2592b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2593f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2594f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2595f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2596d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25973bd0feecSPierre Jolivet PetscBool nooffprocentries; 2598aac34f13SBarry Smith 2599aac34f13SBarry Smith PetscFunctionBegin; 26009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 26019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 26029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26049566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2605d0f46423SBarry Smith m = B->rmap->n / bs; 2606d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2607d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2608d0f46423SBarry Smith cend = B->cmap->rend / bs; 2609b8d659d7SLisandro Dalcin 26105f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26119566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2612aac34f13SBarry Smith for (i = 0; i < m; i++) { 2613cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26145f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2615b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 261637cd3c0dSBarry Smith dlen = 0; 261737cd3c0dSBarry Smith olen = 0; 2618cf12db73SBarry Smith JJ = jj + ii[i]; 2619b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 262037cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 262137cd3c0dSBarry Smith else dlen++; 2622aac34f13SBarry Smith JJ++; 2623aac34f13SBarry Smith } 262437cd3c0dSBarry Smith d_nnz[i] = dlen; 262537cd3c0dSBarry Smith o_nnz[i] = olen; 2626aac34f13SBarry Smith } 26279566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26289566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2629aac34f13SBarry Smith 2630b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 263148a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2632b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2633b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2634cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2635cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2636bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2637cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26389566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26393adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26403adadaf3SJed Brown PetscInt j; 26413adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26423adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26439566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26443adadaf3SJed Brown } 26453adadaf3SJed Brown } 2646aac34f13SBarry Smith } 2647aac34f13SBarry Smith 26489566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26493bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26503bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26533bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26543bd0feecSPierre Jolivet 26559566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2657aac34f13SBarry Smith } 2658aac34f13SBarry Smith 2659aac34f13SBarry Smith /*@C 266011a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2661aac34f13SBarry Smith 2662d083f849SBarry Smith Collective 2663aac34f13SBarry Smith 2664aac34f13SBarry Smith Input Parameters: 26651c4f3114SJed Brown + B - the matrix 2666dfb205c3SBarry Smith . bs - the block size 266720f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2668aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2669d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2670aac34f13SBarry Smith 2671664954b6SBarry Smith Level: advanced 2672aac34f13SBarry Smith 267395452b02SPatrick Sanan Notes: 2674d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2675d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2676d8a51d2aSBarry Smith called this routine. 2677d8a51d2aSBarry Smith 267811a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 267911a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26803adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 268111a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26823adadaf3SJed Brown block column and the second index is over columns within a block. 26833adadaf3SJed Brown 2684664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2685664954b6SBarry Smith 26867d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2687aac34f13SBarry Smith @*/ 2688d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2689d71ae5a4SJacob Faibussowitsch { 2690aac34f13SBarry Smith PetscFunctionBegin; 26916ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26926ba663aaSJed Brown PetscValidType(B, 1); 26936ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2694cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2696aac34f13SBarry Smith } 2697aac34f13SBarry Smith 2698d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2699d71ae5a4SJacob Faibussowitsch { 2700ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2701535b19f3SBarry Smith PetscInt i; 27025d2a9ed1SStefano Zampini PetscMPIInt size; 2703a23d5eceSKris Buschelman 2704a23d5eceSKris Buschelman PetscFunctionBegin; 2705ad79cf63SBarry Smith if (B->hash_active) { 2706aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2707ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2708ad79cf63SBarry Smith } 2709ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 27109566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 27119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27139566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2714899cda47SBarry Smith 2715a23d5eceSKris Buschelman if (d_nnz) { 2716ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2717a23d5eceSKris Buschelman } 2718a23d5eceSKris Buschelman if (o_nnz) { 2719ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2720a23d5eceSKris Buschelman } 2721a23d5eceSKris Buschelman 2722a23d5eceSKris Buschelman b->bs2 = bs * bs; 2723d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2724d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2725d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2726d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2727a23d5eceSKris Buschelman 2728ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2729d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2730d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2731d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2732d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2733a23d5eceSKris Buschelman 2734cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2735eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2736cb7b82ddSBarry Smith #else 27379566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2738cb7b82ddSBarry Smith #endif 27399566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27419566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2742cb7b82ddSBarry Smith 27439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2744c508b908SBarry Smith 2745c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27469566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27479566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27499566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2750c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2751cb7b82ddSBarry Smith 2752c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2753ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27549566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27569566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2757c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2758a23d5eceSKris Buschelman 27599566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27609566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2761526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2762cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2763cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2765a23d5eceSKris Buschelman } 2766a23d5eceSKris Buschelman 27677087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27687087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27695bf65638SKris Buschelman 2770d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2771d71ae5a4SJacob Faibussowitsch { 277282094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 277382094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 277482094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 277582094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 277682094794SBarry Smith 277782094794SBarry Smith PetscFunctionBegin; 27789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 277982094794SBarry Smith ii[0] = 0; 278082094794SBarry Smith for (i = 0; i < M; i++) { 278108401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 278208401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 278382094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27845ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27855ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27869371c9d4SSatish Balay if (jd[j] == i) { 27879371c9d4SSatish Balay ii[i + 1]--; 27889371c9d4SSatish Balay break; 27899371c9d4SSatish Balay } 27905ee9ba1cSJed Brown } 279182094794SBarry Smith } 27929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 279382094794SBarry Smith cnt = 0; 279482094794SBarry Smith for (i = 0; i < M; i++) { 279582094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 279682094794SBarry Smith if (garray[jo[j]] > rstart) break; 279782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279882094794SBarry Smith } 279982094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2800ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 280182094794SBarry Smith } 2802ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 280382094794SBarry Smith } 28049566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 28053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 280682094794SBarry Smith } 280782094794SBarry Smith 2808c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 280962471d69SBarry Smith 2810cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2811b2573a8aSBarry Smith 2812d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2813d71ae5a4SJacob Faibussowitsch { 281462471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 281585a69837SSatish Balay Mat_MPIAIJ *b; 28165f80ce2aSJacob Faibussowitsch Mat B; 281762471d69SBarry Smith 281862471d69SBarry Smith PetscFunctionBegin; 28195f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 282062471d69SBarry Smith 28210f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28220f6d62edSLisandro Dalcin B = *newmat; 28230f6d62edSLisandro Dalcin } else { 28249566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28259566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28279566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28299566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28300f6d62edSLisandro Dalcin } 283162471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 283262471d69SBarry Smith 28330f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28349566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28359566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28360f6d62edSLisandro Dalcin } else { 28377c612885SStefano Zampini PetscInt *garray = a->garray; 28387c612885SStefano Zampini Mat_SeqAIJ *bB; 28397c612885SStefano Zampini PetscInt bs, nnz; 28409566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28427c612885SStefano Zampini /* just clear out the data structure */ 28437c612885SStefano Zampini PetscCall(MatDisAssemble_MPIAIJ(B)); 28449566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28459566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28467c612885SStefano Zampini 28477c612885SStefano Zampini /* Global numbering for b->B columns */ 28487c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28497c612885SStefano Zampini bs = A->rmap->bs; 28507c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28517c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28527c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28537c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28547c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28557c612885SStefano Zampini } 28560f6d62edSLisandro Dalcin } 28579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28590f6d62edSLisandro Dalcin 2860511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28619566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 286262471d69SBarry Smith } else { 286362471d69SBarry Smith *newmat = B; 286462471d69SBarry Smith } 28653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 286662471d69SBarry Smith } 286762471d69SBarry Smith 28680bad9183SKris Buschelman /*MC 2869fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28700bad9183SKris Buschelman 28710bad9183SKris Buschelman Options Database Keys: 287211a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28738c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28746679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 287567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28760bad9183SKris Buschelman 28770bad9183SKris Buschelman Level: beginner 28780cd7f59aSBarry Smith 287911a5261eSBarry Smith Note: 28805e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 288111a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28820bad9183SKris Buschelman 28835e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28840bad9183SKris Buschelman M*/ 28850bad9183SKris Buschelman 2886cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2887c0cdd4a1SDahai Guo 2888d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2889d71ae5a4SJacob Faibussowitsch { 2890273d9f13SBarry Smith Mat_MPIBAIJ *b; 289194ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2892273d9f13SBarry Smith 2893273d9f13SBarry Smith PetscFunctionBegin; 28944dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 289582502324SSatish Balay B->data = (void *)b; 2896aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2897273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2898273d9f13SBarry Smith 2899273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 29019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2902273d9f13SBarry Smith 2903273d9f13SBarry Smith /* build local table of row and column ownerships */ 29049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2905273d9f13SBarry Smith 2906273d9f13SBarry Smith /* build cache for off array entries formed */ 29079566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 290826fbe8dcSKarl Rupp 2909273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 29100298fd71SBarry Smith b->colmap = NULL; 29110298fd71SBarry Smith b->garray = NULL; 2912273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2913273d9f13SBarry Smith 2914273d9f13SBarry Smith /* stuff used in block assembly */ 2915f4259b30SLisandro Dalcin b->barray = NULL; 2916273d9f13SBarry Smith 2917273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2918f4259b30SLisandro Dalcin b->lvec = NULL; 2919f4259b30SLisandro Dalcin b->Mvctx = NULL; 2920273d9f13SBarry Smith 2921273d9f13SBarry Smith /* stuff for MatGetRow() */ 2922f4259b30SLisandro Dalcin b->rowindices = NULL; 2923f4259b30SLisandro Dalcin b->rowvalues = NULL; 2924273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2925273d9f13SBarry Smith 2926273d9f13SBarry Smith /* hash table stuff */ 2927f4259b30SLisandro Dalcin b->ht = NULL; 2928f4259b30SLisandro Dalcin b->hd = NULL; 2929273d9f13SBarry Smith b->ht_size = 0; 2930273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2931273d9f13SBarry Smith b->ht_fact = 0; 2932273d9f13SBarry Smith b->ht_total_ct = 0; 2933273d9f13SBarry Smith b->ht_insert_ct = 0; 2934273d9f13SBarry Smith 29357dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29367a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29377a868f3eSHong Zhang 29389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29417ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29437ea3e4caSstefano_zampini #endif 29449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29519566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 295294ae4db5SBarry Smith 2953d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29549566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 295594ae4db5SBarry Smith if (flg) { 295694ae4db5SBarry Smith PetscReal fact = 1.39; 29579566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29589566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 295994ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29609566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29619566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 296294ae4db5SBarry Smith } 2963d0609cedSBarry Smith PetscOptionsEnd(); 29643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2965273d9f13SBarry Smith } 2966273d9f13SBarry Smith 29672920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2968209238afSKris Buschelman /*MC 2969002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2970209238afSKris Buschelman 297111a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 297211a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2973209238afSKris Buschelman 2974209238afSKris Buschelman Options Database Keys: 297511a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2976209238afSKris Buschelman 2977209238afSKris Buschelman Level: beginner 2978209238afSKris Buschelman 297967be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2980209238afSKris Buschelman M*/ 2981209238afSKris Buschelman 2982273d9f13SBarry Smith /*@C 298311a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 298467be906fSBarry Smith (block compressed row). 2985273d9f13SBarry Smith 2986c3339decSBarry Smith Collective 2987273d9f13SBarry Smith 2988273d9f13SBarry Smith Input Parameters: 29891c4f3114SJed Brown + B - the matrix 299011a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 299167be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2992273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2993273d9f13SBarry Smith submatrix (same for all local rows) 2994273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2995273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 299667be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 299795742e49SBarry Smith set it even if it is zero. 2998273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2999273d9f13SBarry Smith submatrix (same for all local rows). 3000273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3001273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 300267be906fSBarry Smith each block row) or `NULL`. 3003273d9f13SBarry Smith 300449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3005273d9f13SBarry Smith 3006273d9f13SBarry Smith Options Database Keys: 30078c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 300867b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 3009273d9f13SBarry Smith 301067be906fSBarry Smith Level: intermediate 301167be906fSBarry Smith 3012273d9f13SBarry Smith Notes: 301367be906fSBarry Smith For good matrix assembly performance 301467be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 301567be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 301667be906fSBarry Smith performance can be increased by more than a factor of 50. 301767be906fSBarry Smith 301811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3019273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3020273d9f13SBarry Smith 3021273d9f13SBarry Smith Storage Information: 3022273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3023273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3024273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3025273d9f13SBarry Smith local matrix (a rectangular submatrix). 3026273d9f13SBarry Smith 3027273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 302867be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 302967be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3030273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 303167be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3032273d9f13SBarry Smith 3033273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3034273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3035273d9f13SBarry Smith 3036273d9f13SBarry Smith .vb 3037273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3038a4b1a0f6SJed Brown -------------------------- 3039273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3040273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3041273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3042a4b1a0f6SJed Brown -------------------------- 3043273d9f13SBarry Smith .ve 3044273d9f13SBarry Smith 3045273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3046273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3047273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 304811a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3049273d9f13SBarry Smith 305067be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 305167be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3052273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 305320f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3054273d9f13SBarry Smith 305511a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3056aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 305767be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3058aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3059aa95bbe8SBarry Smith 306067be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3061273d9f13SBarry Smith @*/ 3062d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3063d71ae5a4SJacob Faibussowitsch { 3064273d9f13SBarry Smith PetscFunctionBegin; 30656ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30666ba663aaSJed Brown PetscValidType(B, 1); 30676ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3068cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3070273d9f13SBarry Smith } 3071273d9f13SBarry Smith 30722920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 307379bdfe76SSatish Balay /*@C 307411a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 307567be906fSBarry Smith (block compressed row). 307679bdfe76SSatish Balay 3077d083f849SBarry Smith Collective 3078db81eaa0SLois Curfman McInnes 307979bdfe76SSatish Balay Input Parameters: 3080db81eaa0SLois Curfman McInnes + comm - MPI communicator 308111a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 308211a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 308311a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 308492e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308592e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 308611a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 308792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308892e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 308911a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 309011a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 309147a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 309279bdfe76SSatish Balay submatrix (same for all local rows) 309347a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 309492e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30950298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 309695742e49SBarry Smith and set it even if it is zero. 309747a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 309879bdfe76SSatish Balay submatrix (same for all local rows). 309947a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 310092e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 31010298fd71SBarry Smith each block row) or NULL. 310279bdfe76SSatish Balay 310379bdfe76SSatish Balay Output Parameter: 310479bdfe76SSatish Balay . A - the matrix 310579bdfe76SSatish Balay 3106db81eaa0SLois Curfman McInnes Options Database Keys: 31078c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 310867b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 31093ffaccefSLois Curfman McInnes 311067be906fSBarry Smith Level: intermediate 311167be906fSBarry Smith 311267be906fSBarry Smith Notes: 311377433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 311477433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 311577433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 311677433607SBarry Smith 311767be906fSBarry Smith For good matrix assembly performance 311867be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 311967be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 312067be906fSBarry Smith performance can be increased by more than a factor of 50. 312167be906fSBarry Smith 312249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 312349a6f317SBarry Smith 312447a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 312547a75d0bSBarry Smith 312679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 312779bdfe76SSatish Balay (possibly both). 312879bdfe76SSatish Balay 312911a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3130be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3131be79a94dSBarry Smith 313279bdfe76SSatish Balay Storage Information: 313379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 313479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 313579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 313679bdfe76SSatish Balay local matrix (a rectangular submatrix). 313779bdfe76SSatish Balay 313879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 313979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 314067be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 314179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 314267be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 314379bdfe76SSatish Balay 314479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 314579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 314679bdfe76SSatish Balay 3147db81eaa0SLois Curfman McInnes .vb 3148db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3149a4b1a0f6SJed Brown -------------------------- 3150db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3151db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3152db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3153a4b1a0f6SJed Brown -------------------------- 3154db81eaa0SLois Curfman McInnes .ve 315579bdfe76SSatish Balay 315679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 315779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 315911a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 316079bdfe76SSatish Balay 316167be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 316267be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 316379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 316420f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 316579bdfe76SSatish Balay 316642747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 316779bdfe76SSatish Balay @*/ 3168d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3169d71ae5a4SJacob Faibussowitsch { 3170b24ad042SBarry Smith PetscMPIInt size; 317179bdfe76SSatish Balay 3172d64ed03dSBarry Smith PetscFunctionBegin; 31739566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3176273d9f13SBarry Smith if (size > 1) { 31779566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31789566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3179273d9f13SBarry Smith } else { 31809566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31819566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31823914022bSBarry Smith } 31833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 318479bdfe76SSatish Balay } 3185026e39d0SSatish Balay 3186d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3187d71ae5a4SJacob Faibussowitsch { 31880ac07820SSatish Balay Mat mat; 31890ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3190b24ad042SBarry Smith PetscInt len = 0; 31910ac07820SSatish Balay 3192d64ed03dSBarry Smith PetscFunctionBegin; 3193f4259b30SLisandro Dalcin *newmat = NULL; 31949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31969566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31977fff6886SHong Zhang 3198420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3199420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3200420957c1SBarry Smith if (matin->hash_active) { 3201420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3202420957c1SBarry Smith } else { 3203d5f3da31SBarry Smith mat->factortype = matin->factortype; 3204273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32050ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32067fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32077fff6886SHong Zhang 3208273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3209d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32100ac07820SSatish Balay a->bs2 = oldmat->bs2; 32110ac07820SSatish Balay a->mbs = oldmat->mbs; 32120ac07820SSatish Balay a->nbs = oldmat->nbs; 32130ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32140ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32150ac07820SSatish Balay 32160ac07820SSatish Balay a->size = oldmat->size; 32170ac07820SSatish Balay a->rank = oldmat->rank; 3218aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3219aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3220f4259b30SLisandro Dalcin a->rowindices = NULL; 3221f4259b30SLisandro Dalcin a->rowvalues = NULL; 32220ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3223f4259b30SLisandro Dalcin a->barray = NULL; 3224899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3225899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3226899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3227899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32280ac07820SSatish Balay 3229133cdb44SSatish Balay /* hash table stuff */ 3230f4259b30SLisandro Dalcin a->ht = NULL; 3231f4259b30SLisandro Dalcin a->hd = NULL; 3232133cdb44SSatish Balay a->ht_size = 0; 3233133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 323425fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3235133cdb44SSatish Balay a->ht_total_ct = 0; 3236133cdb44SSatish Balay a->ht_insert_ct = 0; 3237133cdb44SSatish Balay 32389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32390ac07820SSatish Balay if (oldmat->colmap) { 3240aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3241eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 324248e59246SSatish Balay #else 32439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 324548e59246SSatish Balay #endif 3246f4259b30SLisandro Dalcin } else a->colmap = NULL; 32474beb1cfeSHong Zhang 3248f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32509566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3251f4259b30SLisandro Dalcin } else a->garray = NULL; 32520ac07820SSatish Balay 32539566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32549566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32559566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32567fff6886SHong Zhang 32579566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32589566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3259420957c1SBarry Smith } 32609566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32610ac07820SSatish Balay *newmat = mat; 32623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32630ac07820SSatish Balay } 326457b952d6SSatish Balay 3265618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3267d71ae5a4SJacob Faibussowitsch { 3268b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3269b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3270b51a4376SLisandro Dalcin PetscScalar *matvals; 3271b51a4376SLisandro Dalcin 3272b51a4376SLisandro Dalcin PetscFunctionBegin; 32739566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3274b51a4376SLisandro Dalcin 3275b51a4376SLisandro Dalcin /* read in matrix header */ 32769566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32775f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32789371c9d4SSatish Balay M = header[1]; 32799371c9d4SSatish Balay N = header[2]; 32809371c9d4SSatish Balay nz = header[3]; 32815f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32825f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32835f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3284b51a4376SLisandro Dalcin 3285b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32869566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3287618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3288618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3289618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3290b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3291b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3292b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3295b51a4376SLisandro Dalcin 3296b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32979566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32985f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32999566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 33009566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 33019566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 33029566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 33039371c9d4SSatish Balay mbs = m / bs; 33049371c9d4SSatish Balay nbs = n / bs; 3305b51a4376SLisandro Dalcin 3306b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 33079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 33089566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 33099371c9d4SSatish Balay rowidxs[0] = 0; 33109371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 33111c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 33125f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3313b51a4376SLisandro Dalcin 3314b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 33159566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 33169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 33179566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3318b51a4376SLisandro Dalcin 3319b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3320b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3321b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3322618cc2edSLisandro Dalcin PetscBool sbaij, done; 3323b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3324b51a4376SLisandro Dalcin 33259566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33269566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33279566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3329b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33309566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33319566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3332618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3333618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3334618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3335618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3336618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3337618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3338618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3339b51a4376SLisandro Dalcin } else { 33409566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3341b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3342b51a4376SLisandro Dalcin } 3343b51a4376SLisandro Dalcin } 3344618cc2edSLisandro Dalcin } 3345618cc2edSLisandro Dalcin } 3346618cc2edSLisandro Dalcin } 33479566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33489566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33499566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33509566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33519566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3352b51a4376SLisandro Dalcin } 3353b51a4376SLisandro Dalcin 3354b51a4376SLisandro Dalcin /* store matrix values */ 3355b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3356b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33579927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3358b51a4376SLisandro Dalcin } 3359b51a4376SLisandro Dalcin 33609566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33619566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3365b51a4376SLisandro Dalcin } 3366b51a4376SLisandro Dalcin 3367d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3368d71ae5a4SJacob Faibussowitsch { 33697f489da9SVaclav Hapla PetscBool isbinary; 33704683f7a4SShri Abhyankar 33714683f7a4SShri Abhyankar PetscFunctionBegin; 33729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33735f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33749566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33764683f7a4SShri Abhyankar } 33774683f7a4SShri Abhyankar 3378133cdb44SSatish Balay /*@ 337911a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3380133cdb44SSatish Balay 3381133cdb44SSatish Balay Input Parameters: 3382a2b725a8SWilliam Gropp + mat - the matrix 3383a2b725a8SWilliam Gropp - fact - factor 3384133cdb44SSatish Balay 338511a5261eSBarry Smith Options Database Key: 338611a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3387fee21e36SBarry Smith 33888c890885SBarry Smith Level: advanced 33898c890885SBarry Smith 339067be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3391133cdb44SSatish Balay @*/ 3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3393d71ae5a4SJacob Faibussowitsch { 33945bf65638SKris Buschelman PetscFunctionBegin; 3395cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33975bf65638SKris Buschelman } 33985bf65638SKris Buschelman 3399d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3400d71ae5a4SJacob Faibussowitsch { 340125fdafccSSatish Balay Mat_MPIBAIJ *baij; 3402133cdb44SSatish Balay 3403133cdb44SSatish Balay PetscFunctionBegin; 3404133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3405133cdb44SSatish Balay baij->ht_fact = fact; 34063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3407133cdb44SSatish Balay } 3408f2a5309cSSatish Balay 3409d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3410d71ae5a4SJacob Faibussowitsch { 3411f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3412ab4d48faSStefano Zampini PetscBool flg; 34135fd66863SKarl Rupp 3414f2a5309cSSatish Balay PetscFunctionBegin; 34159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 34165f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 341721e72a00SBarry Smith if (Ad) *Ad = a->A; 341821e72a00SBarry Smith if (Ao) *Ao = a->B; 341921e72a00SBarry Smith if (colmap) *colmap = a->garray; 34203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3421f2a5309cSSatish Balay } 342285535b8eSBarry Smith 342385535b8eSBarry Smith /* 342485535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 342585535b8eSBarry Smith */ 342685535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 342785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 342885535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 342985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 343085535b8eSBarry Smith #endif 343185535b8eSBarry Smith 34322920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 343385535b8eSBarry Smith /*@C 343411a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 343585535b8eSBarry Smith 3436c3339decSBarry Smith Collective 343785535b8eSBarry Smith 343885535b8eSBarry Smith Input Parameters: 3439fe59aa6dSJacob Faibussowitsch + matin - the matrix 344085535b8eSBarry Smith . min - number of input rows 344185535b8eSBarry Smith . im - input rows 344285535b8eSBarry Smith . nin - number of input columns 344385535b8eSBarry Smith . in - input columns 344485535b8eSBarry Smith . v - numerical values input 344511a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 344685535b8eSBarry Smith 344720f4b53cSBarry Smith Level: advanced 344820f4b53cSBarry Smith 3449fe59aa6dSJacob Faibussowitsch Developer Notes: 345011a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 345185535b8eSBarry Smith 345267be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 345385535b8eSBarry Smith @*/ 345466976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3455d71ae5a4SJacob Faibussowitsch { 345685535b8eSBarry Smith /* convert input arguments to C version */ 345785535b8eSBarry Smith Mat mat = *matin; 345885535b8eSBarry Smith PetscInt m = *min, n = *nin; 345985535b8eSBarry Smith InsertMode addv = *addvin; 346085535b8eSBarry Smith 346185535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 346285535b8eSBarry Smith const MatScalar *value; 346385535b8eSBarry Smith MatScalar *barray = baij->barray; 3464ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 346585535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 346685535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3467d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 346885535b8eSBarry Smith 346985535b8eSBarry Smith PetscFunctionBegin; 347085535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 347126fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34725f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34735f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 347485535b8eSBarry Smith if (mat->assembled) { 347585535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 347685535b8eSBarry Smith mat->assembled = PETSC_FALSE; 347785535b8eSBarry Smith } 34789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 347985535b8eSBarry Smith 348085535b8eSBarry Smith if (!barray) { 34819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 348285535b8eSBarry Smith baij->barray = barray; 348385535b8eSBarry Smith } 348485535b8eSBarry Smith 348526fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 348626fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 348726fbe8dcSKarl Rupp 348885535b8eSBarry Smith for (i = 0; i < m; i++) { 348985535b8eSBarry Smith if (im[i] < 0) continue; 34906bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 349185535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 349285535b8eSBarry Smith row = im[i] - rstart; 349385535b8eSBarry Smith for (j = 0; j < n; j++) { 349485535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 349585535b8eSBarry Smith if ((roworiented) && (n == 1)) { 349685535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 349785535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 349885535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 349985535b8eSBarry Smith } else { /* Here a copy is required */ 350085535b8eSBarry Smith if (roworiented) { 350185535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 350285535b8eSBarry Smith } else { 350385535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 350485535b8eSBarry Smith } 350585535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3506ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 350785535b8eSBarry Smith } 350885535b8eSBarry Smith barray -= bs2; 350985535b8eSBarry Smith } 351085535b8eSBarry Smith 351185535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 351285535b8eSBarry Smith col = in[j] - cstart; 35139566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3514f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3515f7d195e4SLawrence Mitchell continue; 3516f7d195e4SLawrence Mitchell } else { 3517f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 351885535b8eSBarry Smith if (mat->was_assembled) { 351948a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 352085535b8eSBarry Smith 352185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 352285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35239371c9d4SSatish Balay { 35249371c9d4SSatish Balay PetscInt data; 3525eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 352608401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 352785535b8eSBarry Smith } 352885535b8eSBarry Smith #else 352908401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 353085535b8eSBarry Smith #endif 353185535b8eSBarry Smith #endif 353285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3533eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 353485535b8eSBarry Smith col = (col - 1) / bs; 353585535b8eSBarry Smith #else 353685535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 353785535b8eSBarry Smith #endif 3538f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35399566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 354085535b8eSBarry Smith col = in[j]; 354185535b8eSBarry Smith } 354226fbe8dcSKarl Rupp } else col = in[j]; 35439566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 354485535b8eSBarry Smith } 354585535b8eSBarry Smith } 354685535b8eSBarry Smith } else { 354785535b8eSBarry Smith if (!baij->donotstash) { 354885535b8eSBarry Smith if (roworiented) { 35499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 355085535b8eSBarry Smith } else { 35519566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 355285535b8eSBarry Smith } 355385535b8eSBarry Smith } 355485535b8eSBarry Smith } 355585535b8eSBarry Smith } 355685535b8eSBarry Smith 355785535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35589566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 356085535b8eSBarry Smith } 3561dfb205c3SBarry Smith 3562dfb205c3SBarry Smith /*@ 3563d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3564dfb205c3SBarry Smith 3565d083f849SBarry Smith Collective 3566dfb205c3SBarry Smith 3567dfb205c3SBarry Smith Input Parameters: 3568dfb205c3SBarry Smith + comm - MPI communicator 3569dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 357011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3571dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3572d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3573d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3574d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3575d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3576483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3577dfb205c3SBarry Smith . j - column indices 3578dfb205c3SBarry Smith - a - matrix values 3579dfb205c3SBarry Smith 3580dfb205c3SBarry Smith Output Parameter: 3581dfb205c3SBarry Smith . mat - the matrix 3582dfb205c3SBarry Smith 3583dfb205c3SBarry Smith Level: intermediate 3584dfb205c3SBarry Smith 3585dfb205c3SBarry Smith Notes: 358667be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3587dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 358811a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3589dfb205c3SBarry Smith 35903adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35913adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35923adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35933adadaf3SJed Brown with column-major ordering within blocks. 35943adadaf3SJed Brown 3595d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3596dfb205c3SBarry Smith 359767be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35987d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3599dfb205c3SBarry Smith @*/ 3600d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3601d71ae5a4SJacob Faibussowitsch { 3602dfb205c3SBarry Smith PetscFunctionBegin; 36035f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 36045f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 36059566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 36069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 36079566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 36089566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 36099566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 36109566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 36119566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 36129566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 36133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3614dfb205c3SBarry Smith } 3615e561ad89SHong Zhang 3616d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3617d71ae5a4SJacob Faibussowitsch { 3618bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3619bd153df0SHong Zhang PetscInt *indx; 3620bd153df0SHong Zhang PetscScalar *values; 3621e561ad89SHong Zhang 3622e561ad89SHong Zhang PetscFunctionBegin; 36239566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3624bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3625bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36262c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3627bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 362877f764caSHong Zhang PetscMPIInt rank, size; 3629e561ad89SHong Zhang 36309566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36319371c9d4SSatish Balay mbs = m / bs; 36329371c9d4SSatish Balay Nbs = N / cbs; 363348a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3634da91a574SPierre Jolivet nbs = n / cbs; 3635e561ad89SHong Zhang 36369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3637d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 363877f764caSHong Zhang 36399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 364177f764caSHong Zhang if (rank == size - 1) { 364277f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36435f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 364477f764caSHong Zhang } 364577f764caSHong Zhang 3646d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3647bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36489566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3649647a6520SHong Zhang nnz = nnz / bs; 3650647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36519566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36529566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3653e561ad89SHong Zhang } 36549566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3655e561ad89SHong Zhang 36569566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36589566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36599566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36609566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36619566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3662d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36639566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3664e561ad89SHong Zhang } 3665e561ad89SHong Zhang 3666bd153df0SHong Zhang /* numeric phase */ 36679566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36689566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3669e561ad89SHong Zhang 3670e561ad89SHong Zhang for (i = 0; i < m; i++) { 36719566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3672e561ad89SHong Zhang Ii = i + rstart; 36739566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36749566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3675e561ad89SHong Zhang } 36769566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36779566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3679e561ad89SHong Zhang } 3680