179bdfe76SSatish Balay 2e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 379bdfe76SSatish Balay 4dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 5dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 6b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqBAIJ(Mat); 14dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,const PetscScalar*); 1593fea6afSBarry Smith 1693fea6afSBarry Smith /* UGLY, ugly, ugly 1787828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 1893fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 1993fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2093fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2193fea6afSBarry Smith into the single precision data structures. 2293fea6afSBarry Smith */ 2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 2993fea6afSBarry Smith #else 306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3593fea6afSBarry Smith #endif 363b2fbd54SBarry Smith 374a2ae208SSatish Balay #undef __FUNCT__ 384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ" 39dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPIBAIJ(Mat A,Vec v) 407843d17aSBarry Smith { 417843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 42dfbe8321SBarry Smith PetscErrorCode ierr; 43b24ad042SBarry Smith PetscInt i; 4487828ca2SBarry Smith PetscScalar *va,*vb; 457843d17aSBarry Smith Vec vtmp; 467843d17aSBarry Smith 477843d17aSBarry Smith PetscFunctionBegin; 487843d17aSBarry Smith 497843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 501ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 517843d17aSBarry Smith 52ac355199SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr); 537843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 541ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 557843d17aSBarry Smith 56273d9f13SBarry Smith for (i=0; i<A->m; i++){ 57273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 587843d17aSBarry Smith } 597843d17aSBarry Smith 601ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 611ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 62ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 637843d17aSBarry Smith 647843d17aSBarry Smith PetscFunctionReturn(0); 657843d17aSBarry Smith } 667843d17aSBarry Smith 677fc3c18eSBarry Smith EXTERN_C_BEGIN 684a2ae208SSatish Balay #undef __FUNCT__ 694a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 70dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 717fc3c18eSBarry Smith { 727fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 73dfbe8321SBarry Smith PetscErrorCode ierr; 747fc3c18eSBarry Smith 757fc3c18eSBarry Smith PetscFunctionBegin; 767fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 787fc3c18eSBarry Smith PetscFunctionReturn(0); 797fc3c18eSBarry Smith } 807fc3c18eSBarry Smith EXTERN_C_END 817fc3c18eSBarry Smith 827fc3c18eSBarry Smith EXTERN_C_BEGIN 834a2ae208SSatish Balay #undef __FUNCT__ 844a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 85dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 867fc3c18eSBarry Smith { 877fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 88dfbe8321SBarry Smith PetscErrorCode ierr; 897fc3c18eSBarry Smith 907fc3c18eSBarry Smith PetscFunctionBegin; 917fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 937fc3c18eSBarry Smith PetscFunctionReturn(0); 947fc3c18eSBarry Smith } 957fc3c18eSBarry Smith EXTERN_C_END 967fc3c18eSBarry Smith 97537820f0SBarry Smith /* 98537820f0SBarry Smith Local utility routine that creates a mapping from the global column 9957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10057b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10157b952d6SSatish Balay length of colmap equals the global matrix length. 10257b952d6SSatish Balay */ 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 105dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 10657b952d6SSatish Balay { 10757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 1096849ba73SBarry Smith PetscErrorCode ierr; 110521d7252SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->bs; 11157b952d6SSatish Balay 112d64ed03dSBarry Smith PetscFunctionBegin; 113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 114f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11548e59246SSatish Balay for (i=0; i<nbs; i++){ 1160f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11748e59246SSatish Balay } 11848e59246SSatish Balay #else 119b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 12052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 121b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 122928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12348e59246SSatish Balay #endif 1243a40ed3dSBarry Smith PetscFunctionReturn(0); 12557b952d6SSatish Balay } 12657b952d6SSatish Balay 12780c1aa95SSatish Balay #define CHUNKSIZE 10 12880c1aa95SSatish Balay 129f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13080c1aa95SSatish Balay { \ 13180c1aa95SSatish Balay \ 13280c1aa95SSatish Balay brow = row/bs; \ 13380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 134ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13580c1aa95SSatish Balay bcol = col/bs; \ 13680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 137ab26458aSBarry Smith low = 0; high = nrow; \ 138ab26458aSBarry Smith while (high-low > 3) { \ 139ab26458aSBarry Smith t = (low+high)/2; \ 140ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 141ab26458aSBarry Smith else low = t; \ 142ab26458aSBarry Smith } \ 143ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 147eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 148eada6651SSatish Balay else *bap = value; \ 149ac7a638eSSatish Balay goto a_noinsert; \ 15080c1aa95SSatish Balay } \ 15180c1aa95SSatish Balay } \ 15289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 15377431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 15480c1aa95SSatish Balay if (nrow >= rmax) { \ 15580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 156b24ad042SBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1573eda8832SBarry Smith MatScalar *new_a; \ 15880c1aa95SSatish Balay \ 15977431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 16089280ab3SLois Curfman McInnes \ 16180c1aa95SSatish Balay /* malloc new storage space */ \ 162b24ad042SBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 16382502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 164b24ad042SBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 16580c1aa95SSatish Balay new_i = new_j + new_nz; \ 16680c1aa95SSatish Balay \ 16780c1aa95SSatish Balay /* copy over old data into new slots */ \ 16880c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 16980c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 170b24ad042SBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 17180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 172b24ad042SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 1733eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 17487828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 175549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1763eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 17780c1aa95SSatish Balay /* free up old matrix storage */ \ 178606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 179606d414cSSatish Balay if (!a->singlemalloc) { \ 180606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 181606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 182606d414cSSatish Balay } \ 18380c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1847c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 18580c1aa95SSatish Balay \ 18680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 187ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 18852e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 18980c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 19080c1aa95SSatish Balay a->reallocs++; \ 19180c1aa95SSatish Balay a->nz++; \ 19280c1aa95SSatish Balay } \ 19380c1aa95SSatish Balay N = nrow++ - 1; \ 19480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 19580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 19680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1973eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 19880c1aa95SSatish Balay } \ 1993eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 20080c1aa95SSatish Balay rp[_i] = bcol; \ 20180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 202ac7a638eSSatish Balay a_noinsert:; \ 20380c1aa95SSatish Balay ailen[brow] = nrow; \ 20480c1aa95SSatish Balay } 20557b952d6SSatish Balay 206ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 207ac7a638eSSatish Balay { \ 208ac7a638eSSatish Balay brow = row/bs; \ 209ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 210ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 211ac7a638eSSatish Balay bcol = col/bs; \ 212ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 213ac7a638eSSatish Balay low = 0; high = nrow; \ 214ac7a638eSSatish Balay while (high-low > 3) { \ 215ac7a638eSSatish Balay t = (low+high)/2; \ 216ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 217ac7a638eSSatish Balay else low = t; \ 218ac7a638eSSatish Balay } \ 219ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 220ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 221ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 222ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 223ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 224ac7a638eSSatish Balay else *bap = value; \ 225ac7a638eSSatish Balay goto b_noinsert; \ 226ac7a638eSSatish Balay } \ 227ac7a638eSSatish Balay } \ 22889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 22977431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 230ac7a638eSSatish Balay if (nrow >= rmax) { \ 231ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 232b24ad042SBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 2333eda8832SBarry Smith MatScalar *new_a; \ 234ac7a638eSSatish Balay \ 23577431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 23689280ab3SLois Curfman McInnes \ 237ac7a638eSSatish Balay /* malloc new storage space */ \ 238b24ad042SBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 23982502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 240b24ad042SBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 241ac7a638eSSatish Balay new_i = new_j + new_nz; \ 242ac7a638eSSatish Balay \ 243ac7a638eSSatish Balay /* copy over old data into new slots */ \ 244ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 24574c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 246b24ad042SBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 247ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 248b24ad042SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 2493eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 2503eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 251549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2523eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 253ac7a638eSSatish Balay /* free up old matrix storage */ \ 254606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 255606d414cSSatish Balay if (!b->singlemalloc) { \ 256606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 257606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 258606d414cSSatish Balay } \ 25974c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2607c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 261ac7a638eSSatish Balay \ 262ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 263ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 26452e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 26574c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 26674c639caSSatish Balay b->reallocs++; \ 26774c639caSSatish Balay b->nz++; \ 268ac7a638eSSatish Balay } \ 269ac7a638eSSatish Balay N = nrow++ - 1; \ 270ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 271ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 272ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2733eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 274ac7a638eSSatish Balay } \ 2753eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 276ac7a638eSSatish Balay rp[_i] = bcol; \ 277ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 278ac7a638eSSatish Balay b_noinsert:; \ 279ac7a638eSSatish Balay bilen[brow] = nrow; \ 280ac7a638eSSatish Balay } 281ac7a638eSSatish Balay 28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2834a2ae208SSatish Balay #undef __FUNCT__ 2844a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 285b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 28657b952d6SSatish Balay { 2876fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 288dfbe8321SBarry Smith PetscErrorCode ierr; 289b24ad042SBarry Smith PetscInt i,N = m*n; 2906fa18ffdSBarry Smith MatScalar *vsingle; 29193fea6afSBarry Smith 29293fea6afSBarry Smith PetscFunctionBegin; 2936fa18ffdSBarry Smith if (N > b->setvalueslen) { 2946fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 29582502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2966fa18ffdSBarry Smith b->setvalueslen = N; 2976fa18ffdSBarry Smith } 2986fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2996fa18ffdSBarry Smith 30093fea6afSBarry Smith for (i=0; i<N; i++) { 30193fea6afSBarry Smith vsingle[i] = v[i]; 30293fea6afSBarry Smith } 30393fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 30493fea6afSBarry Smith PetscFunctionReturn(0); 30593fea6afSBarry Smith } 30693fea6afSBarry Smith 3074a2ae208SSatish Balay #undef __FUNCT__ 3084a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 309b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 31093fea6afSBarry Smith { 3116fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 312dfbe8321SBarry Smith PetscErrorCode ierr; 313b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 3146fa18ffdSBarry Smith MatScalar *vsingle; 31593fea6afSBarry Smith 31693fea6afSBarry Smith PetscFunctionBegin; 3176fa18ffdSBarry Smith if (N > b->setvalueslen) { 3186fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 31982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3206fa18ffdSBarry Smith b->setvalueslen = N; 3216fa18ffdSBarry Smith } 3226fa18ffdSBarry Smith vsingle = b->setvaluescopy; 32393fea6afSBarry Smith for (i=0; i<N; i++) { 32493fea6afSBarry Smith vsingle[i] = v[i]; 32593fea6afSBarry Smith } 32693fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 32793fea6afSBarry Smith PetscFunctionReturn(0); 32893fea6afSBarry Smith } 3296fa18ffdSBarry Smith 3304a2ae208SSatish Balay #undef __FUNCT__ 3314a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 332b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3336fa18ffdSBarry Smith { 3346fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 335dfbe8321SBarry Smith PetscErrorCode ierr; 336b24ad042SBarry Smith PetscInt i,N = m*n; 3376fa18ffdSBarry Smith MatScalar *vsingle; 3386fa18ffdSBarry Smith 3396fa18ffdSBarry Smith PetscFunctionBegin; 3406fa18ffdSBarry Smith if (N > b->setvalueslen) { 3416fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 34282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3436fa18ffdSBarry Smith b->setvalueslen = N; 3446fa18ffdSBarry Smith } 3456fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3466fa18ffdSBarry Smith for (i=0; i<N; i++) { 3476fa18ffdSBarry Smith vsingle[i] = v[i]; 3486fa18ffdSBarry Smith } 3496fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3506fa18ffdSBarry Smith PetscFunctionReturn(0); 3516fa18ffdSBarry Smith } 3526fa18ffdSBarry Smith 3534a2ae208SSatish Balay #undef __FUNCT__ 3544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 355b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3566fa18ffdSBarry Smith { 3576fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 358dfbe8321SBarry Smith PetscErrorCode ierr; 359b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 3606fa18ffdSBarry Smith MatScalar *vsingle; 3616fa18ffdSBarry Smith 3626fa18ffdSBarry Smith PetscFunctionBegin; 3636fa18ffdSBarry Smith if (N > b->setvalueslen) { 3646fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 36582502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3666fa18ffdSBarry Smith b->setvalueslen = N; 3676fa18ffdSBarry Smith } 3686fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3696fa18ffdSBarry Smith for (i=0; i<N; i++) { 3706fa18ffdSBarry Smith vsingle[i] = v[i]; 3716fa18ffdSBarry Smith } 3726fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3736fa18ffdSBarry Smith PetscFunctionReturn(0); 3746fa18ffdSBarry Smith } 37593fea6afSBarry Smith #endif 37693fea6afSBarry Smith 3774a2ae208SSatish Balay #undef __FUNCT__ 378e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 379b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 38093fea6afSBarry Smith { 38157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 38293fea6afSBarry Smith MatScalar value; 383273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 384dfbe8321SBarry Smith PetscErrorCode ierr; 385b24ad042SBarry Smith PetscInt i,j,row,col; 386b24ad042SBarry Smith PetscInt rstart_orig=baij->rstart_bs; 387b24ad042SBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 388521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 38957b952d6SSatish Balay 390eada6651SSatish Balay /* Some Variables required in the macro */ 39180c1aa95SSatish Balay Mat A = baij->A; 39280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 393b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3943eda8832SBarry Smith MatScalar *aa=a->a; 395ac7a638eSSatish Balay 396ac7a638eSSatish Balay Mat B = baij->B; 397ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 398b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3993eda8832SBarry Smith MatScalar *ba=b->a; 400ac7a638eSSatish Balay 401b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 402b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 4033eda8832SBarry Smith MatScalar *ap,*bap; 40480c1aa95SSatish Balay 405d64ed03dSBarry Smith PetscFunctionBegin; 40657b952d6SSatish Balay for (i=0; i<m; i++) { 4075ef9f2a5SBarry Smith if (im[i] < 0) continue; 4082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40977431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 410639f9d9dSBarry Smith #endif 41157b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 41257b952d6SSatish Balay row = im[i] - rstart_orig; 41357b952d6SSatish Balay for (j=0; j<n; j++) { 41457b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 41557b952d6SSatish Balay col = in[j] - cstart_orig; 41657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 417f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 41880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 41973959e64SBarry Smith } else if (in[j] < 0) continue; 4202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 42177431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->N-1);} 422639f9d9dSBarry Smith #endif 42357b952d6SSatish Balay else { 42457b952d6SSatish Balay if (mat->was_assembled) { 425905e6a2fSBarry Smith if (!baij->colmap) { 426905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 427905e6a2fSBarry Smith } 428aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4290f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 430bba1ac68SSatish Balay col = col - 1; 43148e59246SSatish Balay #else 432bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 43348e59246SSatish Balay #endif 43457b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 43557b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 4368295de27SSatish Balay col = in[j]; 4379bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 4389bf004c3SSatish Balay B = baij->B; 4399bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 4409bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 4419bf004c3SSatish Balay ba=b->a; 442bba1ac68SSatish Balay } else col += in[j]%bs; 4438295de27SSatish Balay } else col = in[j]; 44457b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 44590da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 44690da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 44757b952d6SSatish Balay } 44857b952d6SSatish Balay } 449d64ed03dSBarry Smith } else { 45090f02eecSBarry Smith if (!baij->donotstash) { 451ff2fd236SBarry Smith if (roworiented) { 4526fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 453ff2fd236SBarry Smith } else { 4546fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 45557b952d6SSatish Balay } 45657b952d6SSatish Balay } 45757b952d6SSatish Balay } 45890f02eecSBarry Smith } 4593a40ed3dSBarry Smith PetscFunctionReturn(0); 46057b952d6SSatish Balay } 46157b952d6SSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 4634a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 464b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 465ab26458aSBarry Smith { 466ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 467f15d580aSBarry Smith const MatScalar *value; 468f15d580aSBarry Smith MatScalar *barray=baij->barray; 469273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 470dfbe8321SBarry Smith PetscErrorCode ierr; 471b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 472b24ad042SBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 473521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 474ab26458aSBarry Smith 475b16ae2b1SBarry Smith PetscFunctionBegin; 47630793edcSSatish Balay if(!barray) { 47782502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 47882502324SSatish Balay baij->barray = barray; 47930793edcSSatish Balay } 48030793edcSSatish Balay 481ab26458aSBarry Smith if (roworiented) { 482ab26458aSBarry Smith stepval = (n-1)*bs; 483ab26458aSBarry Smith } else { 484ab26458aSBarry Smith stepval = (m-1)*bs; 485ab26458aSBarry Smith } 486ab26458aSBarry Smith for (i=0; i<m; i++) { 4875ef9f2a5SBarry Smith if (im[i] < 0) continue; 4882515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48977431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 490ab26458aSBarry Smith #endif 491ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 492ab26458aSBarry Smith row = im[i] - rstart; 493ab26458aSBarry Smith for (j=0; j<n; j++) { 49415b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 49515b57d14SSatish Balay if ((roworiented) && (n == 1)) { 496f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 49715b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 498f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 49915b57d14SSatish Balay } else { /* Here a copy is required */ 500ab26458aSBarry Smith if (roworiented) { 501ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 502ab26458aSBarry Smith } else { 503ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 504abef11f7SSatish Balay } 50547513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 50647513183SBarry Smith for (jj=0; jj<bs; jj++) { 50730793edcSSatish Balay *barray++ = *value++; 50847513183SBarry Smith } 50947513183SBarry Smith } 51030793edcSSatish Balay barray -=bs2; 51115b57d14SSatish Balay } 512abef11f7SSatish Balay 513abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 514abef11f7SSatish Balay col = in[j] - cstart; 51593fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 516ab26458aSBarry Smith } 5175ef9f2a5SBarry Smith else if (in[j] < 0) continue; 5182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 51977431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 520ab26458aSBarry Smith #endif 521ab26458aSBarry Smith else { 522ab26458aSBarry Smith if (mat->was_assembled) { 523ab26458aSBarry Smith if (!baij->colmap) { 524ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 525ab26458aSBarry Smith } 526a5eb4965SSatish Balay 5272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 528aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 529b24ad042SBarry Smith { PetscInt data; 5300f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 53129bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 532fa46199cSSatish Balay } 53348e59246SSatish Balay #else 53429bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 535a5eb4965SSatish Balay #endif 53648e59246SSatish Balay #endif 537aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5380f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 539fa46199cSSatish Balay col = (col - 1)/bs; 54048e59246SSatish Balay #else 541a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 54248e59246SSatish Balay #endif 543ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 544ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 545ab26458aSBarry Smith col = in[j]; 546ab26458aSBarry Smith } 547ab26458aSBarry Smith } 548ab26458aSBarry Smith else col = in[j]; 54993fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 550ab26458aSBarry Smith } 551ab26458aSBarry Smith } 552d64ed03dSBarry Smith } else { 553ab26458aSBarry Smith if (!baij->donotstash) { 554ff2fd236SBarry Smith if (roworiented) { 5556fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 556ff2fd236SBarry Smith } else { 5576fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 558ff2fd236SBarry Smith } 559abef11f7SSatish Balay } 560ab26458aSBarry Smith } 561ab26458aSBarry Smith } 5623a40ed3dSBarry Smith PetscFunctionReturn(0); 563ab26458aSBarry Smith } 5646fa18ffdSBarry Smith 5650bdbc534SSatish Balay #define HASH_KEY 0.6180339887 566b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 567b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 568b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 571b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 5720bdbc534SSatish Balay { 5730bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 574273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 575dfbe8321SBarry Smith PetscErrorCode ierr; 576b24ad042SBarry Smith PetscInt i,j,row,col; 577b24ad042SBarry Smith PetscInt rstart_orig=baij->rstart_bs; 578b24ad042SBarry Smith PetscInt rend_orig=baij->rend_bs,Nbs=baij->Nbs; 579521d7252SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->bs,*HT=baij->ht,idx; 580329f5518SBarry Smith PetscReal tmp; 5813eda8832SBarry Smith MatScalar **HD = baij->hd,value; 5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 583b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5844a15367fSSatish Balay #endif 5850bdbc534SSatish Balay 5860bdbc534SSatish Balay PetscFunctionBegin; 5870bdbc534SSatish Balay 5880bdbc534SSatish Balay for (i=0; i<m; i++) { 5892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 59029bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 59177431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 5920bdbc534SSatish Balay #endif 5930bdbc534SSatish Balay row = im[i]; 594c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5950bdbc534SSatish Balay for (j=0; j<n; j++) { 5960bdbc534SSatish Balay col = in[j]; 5976fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 598b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 599c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 600c2760754SSatish Balay h1 = HASH(size,key,tmp); 6010bdbc534SSatish Balay 602c2760754SSatish Balay 603c2760754SSatish Balay idx = h1; 6042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 605187ce0cbSSatish Balay insert_ct++; 606187ce0cbSSatish Balay total_ct++; 607187ce0cbSSatish Balay if (HT[idx] != key) { 608187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 609187ce0cbSSatish Balay if (idx == size) { 610187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 611187ce0cbSSatish Balay if (idx == h1) { 61277431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 613187ce0cbSSatish Balay } 614187ce0cbSSatish Balay } 615187ce0cbSSatish Balay } 616187ce0cbSSatish Balay #else 617c2760754SSatish Balay if (HT[idx] != key) { 618c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 619c2760754SSatish Balay if (idx == size) { 620c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 621c2760754SSatish Balay if (idx == h1) { 62277431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 623c2760754SSatish Balay } 624c2760754SSatish Balay } 625c2760754SSatish Balay } 626187ce0cbSSatish Balay #endif 627c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 628c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 629c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } else { 6320bdbc534SSatish Balay if (!baij->donotstash) { 633ff2fd236SBarry Smith if (roworiented) { 6348798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 635ff2fd236SBarry Smith } else { 6368798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay } 6400bdbc534SSatish Balay } 6412515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 642187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 643187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 644187ce0cbSSatish Balay #endif 6450bdbc534SSatish Balay PetscFunctionReturn(0); 6460bdbc534SSatish Balay } 6470bdbc534SSatish Balay 6484a2ae208SSatish Balay #undef __FUNCT__ 6494a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 650b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 6510bdbc534SSatish Balay { 6520bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 653273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 654dfbe8321SBarry Smith PetscErrorCode ierr; 655b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 656b24ad042SBarry Smith PetscInt rstart=baij->rstart ; 657521d7252SBarry Smith PetscInt rend=baij->rend,stepval,bs=mat->bs,bs2=baij->bs2; 658b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 659329f5518SBarry Smith PetscReal tmp; 6603eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 661f15d580aSBarry Smith const MatScalar *v_t,*value; 6622515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 663b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 6644a15367fSSatish Balay #endif 6650bdbc534SSatish Balay 666d0a41580SSatish Balay PetscFunctionBegin; 667d0a41580SSatish Balay 6680bdbc534SSatish Balay if (roworiented) { 6690bdbc534SSatish Balay stepval = (n-1)*bs; 6700bdbc534SSatish Balay } else { 6710bdbc534SSatish Balay stepval = (m-1)*bs; 6720bdbc534SSatish Balay } 6730bdbc534SSatish Balay for (i=0; i<m; i++) { 6742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 67577431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 67677431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 6770bdbc534SSatish Balay #endif 6780bdbc534SSatish Balay row = im[i]; 679187ce0cbSSatish Balay v_t = v + i*bs2; 680c2760754SSatish Balay if (row >= rstart && row < rend) { 6810bdbc534SSatish Balay for (j=0; j<n; j++) { 6820bdbc534SSatish Balay col = in[j]; 6830bdbc534SSatish Balay 6840bdbc534SSatish Balay /* Look up into the Hash Table */ 685c2760754SSatish Balay key = row*Nbs+col+1; 686c2760754SSatish Balay h1 = HASH(size,key,tmp); 6870bdbc534SSatish Balay 688c2760754SSatish Balay idx = h1; 6892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 690187ce0cbSSatish Balay total_ct++; 691187ce0cbSSatish Balay insert_ct++; 692187ce0cbSSatish Balay if (HT[idx] != key) { 693187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 694187ce0cbSSatish Balay if (idx == size) { 695187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 696187ce0cbSSatish Balay if (idx == h1) { 69777431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 698187ce0cbSSatish Balay } 699187ce0cbSSatish Balay } 700187ce0cbSSatish Balay } 701187ce0cbSSatish Balay #else 702c2760754SSatish Balay if (HT[idx] != key) { 703c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 704c2760754SSatish Balay if (idx == size) { 705c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 706c2760754SSatish Balay if (idx == h1) { 70777431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 708c2760754SSatish Balay } 709c2760754SSatish Balay } 710c2760754SSatish Balay } 711187ce0cbSSatish Balay #endif 712c2760754SSatish Balay baij_a = HD[idx]; 7130bdbc534SSatish Balay if (roworiented) { 714c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 715187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 716187ce0cbSSatish Balay value = v_t; 717187ce0cbSSatish Balay v_t += bs; 718fef45726SSatish Balay if (addv == ADD_VALUES) { 719c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 720c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 721fef45726SSatish Balay baij_a[jj] += *value++; 722b4cc0f5aSSatish Balay } 723b4cc0f5aSSatish Balay } 724fef45726SSatish Balay } else { 725c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 726c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 727fef45726SSatish Balay baij_a[jj] = *value++; 728fef45726SSatish Balay } 729fef45726SSatish Balay } 730fef45726SSatish Balay } 7310bdbc534SSatish Balay } else { 7320bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 733fef45726SSatish Balay if (addv == ADD_VALUES) { 734b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 7350bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 736fef45726SSatish Balay baij_a[jj] += *value++; 737fef45726SSatish Balay } 738fef45726SSatish Balay } 739fef45726SSatish Balay } else { 740fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 741fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 742fef45726SSatish Balay baij_a[jj] = *value++; 743fef45726SSatish Balay } 744b4cc0f5aSSatish Balay } 7450bdbc534SSatish Balay } 7460bdbc534SSatish Balay } 7470bdbc534SSatish Balay } 7480bdbc534SSatish Balay } else { 7490bdbc534SSatish Balay if (!baij->donotstash) { 7500bdbc534SSatish Balay if (roworiented) { 7518798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7520bdbc534SSatish Balay } else { 7538798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7540bdbc534SSatish Balay } 7550bdbc534SSatish Balay } 7560bdbc534SSatish Balay } 7570bdbc534SSatish Balay } 7582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 759187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 760187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 761187ce0cbSSatish Balay #endif 7620bdbc534SSatish Balay PetscFunctionReturn(0); 7630bdbc534SSatish Balay } 764133cdb44SSatish Balay 7654a2ae208SSatish Balay #undef __FUNCT__ 7664a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 767b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 768d6de1c52SSatish Balay { 769d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 7706849ba73SBarry Smith PetscErrorCode ierr; 771521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 772b24ad042SBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 773d6de1c52SSatish Balay 774133cdb44SSatish Balay PetscFunctionBegin; 775d6de1c52SSatish Balay for (i=0; i<m; i++) { 77677431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 77777431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 778d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 779d6de1c52SSatish Balay row = idxm[i] - bsrstart; 780d6de1c52SSatish Balay for (j=0; j<n; j++) { 78177431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); 78277431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 783d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 784d6de1c52SSatish Balay col = idxn[j] - bscstart; 78598dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 786d64ed03dSBarry Smith } else { 787905e6a2fSBarry Smith if (!baij->colmap) { 788905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 789905e6a2fSBarry Smith } 790aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7910f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 792fa46199cSSatish Balay data --; 79348e59246SSatish Balay #else 79448e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 79548e59246SSatish Balay #endif 79648e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 797d9d09a02SSatish Balay else { 79848e59246SSatish Balay col = data + idxn[j]%bs; 79998dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 800d6de1c52SSatish Balay } 801d6de1c52SSatish Balay } 802d6de1c52SSatish Balay } 803d64ed03dSBarry Smith } else { 80429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 805d6de1c52SSatish Balay } 806d6de1c52SSatish Balay } 8073a40ed3dSBarry Smith PetscFunctionReturn(0); 808d6de1c52SSatish Balay } 809d6de1c52SSatish Balay 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 812dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 813d6de1c52SSatish Balay { 814d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 815d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 816dfbe8321SBarry Smith PetscErrorCode ierr; 817b24ad042SBarry Smith PetscInt i,bs2=baij->bs2; 818329f5518SBarry Smith PetscReal sum = 0.0; 8193eda8832SBarry Smith MatScalar *v; 820d6de1c52SSatish Balay 821d64ed03dSBarry Smith PetscFunctionBegin; 822d6de1c52SSatish Balay if (baij->size == 1) { 823064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 824d6de1c52SSatish Balay } else { 825d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 826d6de1c52SSatish Balay v = amat->a; 827d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++) { 828aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 829329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 830d6de1c52SSatish Balay #else 831d6de1c52SSatish Balay sum += (*v)*(*v); v++; 832d6de1c52SSatish Balay #endif 833d6de1c52SSatish Balay } 834d6de1c52SSatish Balay v = bmat->a; 835d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++) { 836aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 837329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 838d6de1c52SSatish Balay #else 839d6de1c52SSatish Balay sum += (*v)*(*v); v++; 840d6de1c52SSatish Balay #endif 841d6de1c52SSatish Balay } 842064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 843064f8208SBarry Smith *nrm = sqrt(*nrm); 844d64ed03dSBarry Smith } else { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 846d6de1c52SSatish Balay } 847d64ed03dSBarry Smith } 8483a40ed3dSBarry Smith PetscFunctionReturn(0); 849d6de1c52SSatish Balay } 85057b952d6SSatish Balay 851bd7f49f5SSatish Balay 852fef45726SSatish Balay /* 853fef45726SSatish Balay Creates the hash table, and sets the table 854fef45726SSatish Balay This table is created only once. 855fef45726SSatish Balay If new entried need to be added to the matrix 856fef45726SSatish Balay then the hash table has to be destroyed and 857fef45726SSatish Balay recreated. 858fef45726SSatish Balay */ 8594a2ae208SSatish Balay #undef __FUNCT__ 8604a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 861dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 862596b8d2eSBarry Smith { 863596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 864596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 865596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 866b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 8676849ba73SBarry Smith PetscErrorCode ierr; 868b24ad042SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstart; 869b24ad042SBarry Smith PetscInt cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 870b24ad042SBarry Smith PetscInt *HT,key; 8713eda8832SBarry Smith MatScalar **HD; 872329f5518SBarry Smith PetscReal tmp; 8732515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 874b24ad042SBarry Smith PetscInt ct=0,max=0; 8754a15367fSSatish Balay #endif 876fef45726SSatish Balay 877d64ed03dSBarry Smith PetscFunctionBegin; 878b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 8790bdbc534SSatish Balay size = baij->ht_size; 880fef45726SSatish Balay 8810bdbc534SSatish Balay if (baij->ht) { 8820bdbc534SSatish Balay PetscFunctionReturn(0); 883596b8d2eSBarry Smith } 8840bdbc534SSatish Balay 885fef45726SSatish Balay /* Allocate Memory for Hash Table */ 886b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 887b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 888b9e4cc15SSatish Balay HD = baij->hd; 889a07cd24cSSatish Balay HT = baij->ht; 890b9e4cc15SSatish Balay 891b9e4cc15SSatish Balay 892b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 8930bdbc534SSatish Balay 894596b8d2eSBarry Smith 895596b8d2eSBarry Smith /* Loop Over A */ 8960bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 897596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8980bdbc534SSatish Balay row = i+rstart; 8990bdbc534SSatish Balay col = aj[j]+cstart; 900596b8d2eSBarry Smith 901187ce0cbSSatish Balay key = row*Nbs + col + 1; 902c2760754SSatish Balay h1 = HASH(size,key,tmp); 9030bdbc534SSatish Balay for (k=0; k<size; k++){ 904958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9050bdbc534SSatish Balay HT[(h1+k)%size] = key; 9060bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 907596b8d2eSBarry Smith break; 9082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 909187ce0cbSSatish Balay } else { 910187ce0cbSSatish Balay ct++; 911187ce0cbSSatish Balay #endif 912596b8d2eSBarry Smith } 913187ce0cbSSatish Balay } 9142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 915187ce0cbSSatish Balay if (k> max) max = k; 916187ce0cbSSatish Balay #endif 917596b8d2eSBarry Smith } 918596b8d2eSBarry Smith } 919596b8d2eSBarry Smith /* Loop Over B */ 9200bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 921596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9220bdbc534SSatish Balay row = i+rstart; 9230bdbc534SSatish Balay col = garray[bj[j]]; 924187ce0cbSSatish Balay key = row*Nbs + col + 1; 925c2760754SSatish Balay h1 = HASH(size,key,tmp); 9260bdbc534SSatish Balay for (k=0; k<size; k++){ 927958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9280bdbc534SSatish Balay HT[(h1+k)%size] = key; 9290bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 930596b8d2eSBarry Smith break; 9312515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 932187ce0cbSSatish Balay } else { 933187ce0cbSSatish Balay ct++; 934187ce0cbSSatish Balay #endif 935596b8d2eSBarry Smith } 936187ce0cbSSatish Balay } 9372515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 938187ce0cbSSatish Balay if (k> max) max = k; 939187ce0cbSSatish Balay #endif 940596b8d2eSBarry Smith } 941596b8d2eSBarry Smith } 942596b8d2eSBarry Smith 943596b8d2eSBarry Smith /* Print Summary */ 9442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 945c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 946596b8d2eSBarry Smith if (HT[i]) {j++;} 947c38d4ed2SBarry Smith } 94877431f27SBarry Smith PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max); 949187ce0cbSSatish Balay #endif 9503a40ed3dSBarry Smith PetscFunctionReturn(0); 951596b8d2eSBarry Smith } 95257b952d6SSatish Balay 9534a2ae208SSatish Balay #undef __FUNCT__ 9544a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 955dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 956bbb85fb3SSatish Balay { 957bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 958dfbe8321SBarry Smith PetscErrorCode ierr; 959b24ad042SBarry Smith PetscInt nstash,reallocs; 960bbb85fb3SSatish Balay InsertMode addv; 961bbb85fb3SSatish Balay 962bbb85fb3SSatish Balay PetscFunctionBegin; 963bbb85fb3SSatish Balay if (baij->donotstash) { 964bbb85fb3SSatish Balay PetscFunctionReturn(0); 965bbb85fb3SSatish Balay } 966bbb85fb3SSatish Balay 967bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 968bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 969bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 97029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 971bbb85fb3SSatish Balay } 972bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 973bbb85fb3SSatish Balay 9748798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 9758798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 9768798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 97777431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs); 97846680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 97977431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs); 980bbb85fb3SSatish Balay PetscFunctionReturn(0); 981bbb85fb3SSatish Balay } 982bbb85fb3SSatish Balay 9834a2ae208SSatish Balay #undef __FUNCT__ 9844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 985dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 986bbb85fb3SSatish Balay { 987bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 988a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 9896849ba73SBarry Smith PetscErrorCode ierr; 990b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 991b24ad042SBarry Smith PetscInt *row,*col,other_disassembled; 9927c922b88SBarry Smith PetscTruth r1,r2,r3; 9933eda8832SBarry Smith MatScalar *val; 994bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 995b24ad042SBarry Smith PetscMPIInt n; 996bbb85fb3SSatish Balay 997bbb85fb3SSatish Balay PetscFunctionBegin; 998bbb85fb3SSatish Balay if (!baij->donotstash) { 999a2d1c673SSatish Balay while (1) { 10008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1001a2d1c673SSatish Balay if (!flg) break; 1002a2d1c673SSatish Balay 1003bbb85fb3SSatish Balay for (i=0; i<n;) { 1004bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1005bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1006bbb85fb3SSatish Balay if (j < n) ncols = j-i; 1007bbb85fb3SSatish Balay else ncols = n-i; 1008bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 100993fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 1010bbb85fb3SSatish Balay i = j; 1011bbb85fb3SSatish Balay } 1012bbb85fb3SSatish Balay } 10138798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 1014a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1015a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1016a2d1c673SSatish Balay restore the original flags */ 1017a2d1c673SSatish Balay r1 = baij->roworiented; 1018a2d1c673SSatish Balay r2 = a->roworiented; 1019a2d1c673SSatish Balay r3 = b->roworiented; 10207c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10217c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10227c922b88SBarry Smith b->roworiented = PETSC_FALSE; 1023a2d1c673SSatish Balay while (1) { 10248798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1025a2d1c673SSatish Balay if (!flg) break; 1026a2d1c673SSatish Balay 1027a2d1c673SSatish Balay for (i=0; i<n;) { 1028a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1029a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1030a2d1c673SSatish Balay if (j < n) ncols = j-i; 1031a2d1c673SSatish Balay else ncols = n-i; 103293fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1033a2d1c673SSatish Balay i = j; 1034a2d1c673SSatish Balay } 1035a2d1c673SSatish Balay } 10368798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1037a2d1c673SSatish Balay baij->roworiented = r1; 1038a2d1c673SSatish Balay a->roworiented = r2; 1039a2d1c673SSatish Balay b->roworiented = r3; 1040bbb85fb3SSatish Balay } 1041bbb85fb3SSatish Balay 1042bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1043bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1044bbb85fb3SSatish Balay 1045bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1046bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1047bbb85fb3SSatish Balay /* 1048bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1049bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1050bbb85fb3SSatish Balay */ 1051bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1052bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1053bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1054bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1055bbb85fb3SSatish Balay } 1056bbb85fb3SSatish Balay } 1057bbb85fb3SSatish Balay 1058bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1059bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1060bbb85fb3SSatish Balay } 106173e7a558SHong Zhang b->compressedrow.use = PETSC_TRUE; 1062bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1063bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1064bbb85fb3SSatish Balay 10652515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 1066bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1067f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 1068bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1069bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1070bbb85fb3SSatish Balay } 1071bbb85fb3SSatish Balay #endif 1072bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1073bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1074bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1075bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1076bbb85fb3SSatish Balay } 1077bbb85fb3SSatish Balay 1078606d414cSSatish Balay if (baij->rowvalues) { 1079606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1080606d414cSSatish Balay baij->rowvalues = 0; 1081606d414cSSatish Balay } 1082bbb85fb3SSatish Balay PetscFunctionReturn(0); 1083bbb85fb3SSatish Balay } 108457b952d6SSatish Balay 10854a2ae208SSatish Balay #undef __FUNCT__ 10864a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 10876849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 108857b952d6SSatish Balay { 108957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1090dfbe8321SBarry Smith PetscErrorCode ierr; 1091b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 1092521d7252SBarry Smith PetscInt bs = mat->bs; 109332077d6dSBarry Smith PetscTruth iascii,isdraw; 1094b0a32e0cSBarry Smith PetscViewer sviewer; 1095f3ef73ceSBarry Smith PetscViewerFormat format; 109657b952d6SSatish Balay 1097d64ed03dSBarry Smith PetscFunctionBegin; 1098f81bd7ccSHong Zhang /* printf(" MatView_MPIBAIJ_ASCIIorDraworSocket is called ...\n"); */ 109932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1100fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 110132077d6dSBarry Smith if (iascii) { 1102b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1103456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 11044e220ebcSLois Curfman McInnes MatInfo info; 1105d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1106d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 110777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 110877431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 1109521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 1110d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 111177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1112d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 111377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1114b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 111557b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 11163a40ed3dSBarry Smith PetscFunctionReturn(0); 1117fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 111877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 11193a40ed3dSBarry Smith PetscFunctionReturn(0); 112004929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 112104929863SHong Zhang PetscFunctionReturn(0); 112257b952d6SSatish Balay } 112357b952d6SSatish Balay } 112457b952d6SSatish Balay 11250f5bd95cSBarry Smith if (isdraw) { 1126b0a32e0cSBarry Smith PetscDraw draw; 112757b952d6SSatish Balay PetscTruth isnull; 1128b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1129b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 113057b952d6SSatish Balay } 113157b952d6SSatish Balay 113257b952d6SSatish Balay if (size == 1) { 1133873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 113457b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1135d64ed03dSBarry Smith } else { 113657b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 113757b952d6SSatish Balay Mat A; 113857b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1139b24ad042SBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11403eda8832SBarry Smith MatScalar *a; 114157b952d6SSatish Balay 1142f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1143f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 114457b952d6SSatish Balay if (!rank) { 1145f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 1146d64ed03dSBarry Smith } else { 1147f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 114857b952d6SSatish Balay } 1149f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1150521d7252SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 115152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 115257b952d6SSatish Balay 115357b952d6SSatish Balay /* copy over the A part */ 115457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 115557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1156b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 115757b952d6SSatish Balay 115857b952d6SSatish Balay for (i=0; i<mbs; i++) { 115957b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 116057b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 116157b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 116257b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 116357b952d6SSatish Balay for (k=0; k<bs; k++) { 116493fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1165cee3aa6bSSatish Balay col++; a += bs; 116657b952d6SSatish Balay } 116757b952d6SSatish Balay } 116857b952d6SSatish Balay } 116957b952d6SSatish Balay /* copy over the B part */ 117057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 117157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 117257b952d6SSatish Balay for (i=0; i<mbs; i++) { 117357b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 117457b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 117557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 117657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 117757b952d6SSatish Balay for (k=0; k<bs; k++) { 117893fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1179cee3aa6bSSatish Balay col++; a += bs; 118057b952d6SSatish Balay } 118157b952d6SSatish Balay } 118257b952d6SSatish Balay } 1183606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11846d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11856d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 118655843e3eSBarry Smith /* 118755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1188b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 118955843e3eSBarry Smith */ 1190b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1191f14a1c24SBarry Smith if (!rank) { 1192e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 11936831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 119457b952d6SSatish Balay } 1195b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 119657b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 119757b952d6SSatish Balay } 11983a40ed3dSBarry Smith PetscFunctionReturn(0); 119957b952d6SSatish Balay } 120057b952d6SSatish Balay 12014a2ae208SSatish Balay #undef __FUNCT__ 12024a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1203dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 120457b952d6SSatish Balay { 1205dfbe8321SBarry Smith PetscErrorCode ierr; 120632077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 120757b952d6SSatish Balay 1208d64ed03dSBarry Smith PetscFunctionBegin; 120932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1210fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1211b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1212fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 121332077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 12147b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 12155cd90555SBarry Smith } else { 121679a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 121757b952d6SSatish Balay } 12183a40ed3dSBarry Smith PetscFunctionReturn(0); 121957b952d6SSatish Balay } 122057b952d6SSatish Balay 12214a2ae208SSatish Balay #undef __FUNCT__ 12224a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1223dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 122479bdfe76SSatish Balay { 122579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1226dfbe8321SBarry Smith PetscErrorCode ierr; 122779bdfe76SSatish Balay 1228d64ed03dSBarry Smith PetscFunctionBegin; 1229aa482453SBarry Smith #if defined(PETSC_USE_LOG) 123077431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 123179bdfe76SSatish Balay #endif 12328798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12338798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 1234606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 123579bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 123679bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1237aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12380f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 123948e59246SSatish Balay #else 1240606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 124148e59246SSatish Balay #endif 1242606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1243606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1244606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1245606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1246606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1247606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 12486fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 12496fa18ffdSBarry Smith if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 12506fa18ffdSBarry Smith #endif 1251606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1252901853e0SKris Buschelman 1253901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1254901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1255901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1256901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1257aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1258901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1259901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 12603a40ed3dSBarry Smith PetscFunctionReturn(0); 126179bdfe76SSatish Balay } 126279bdfe76SSatish Balay 12634a2ae208SSatish Balay #undef __FUNCT__ 12644a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1265dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1266cee3aa6bSSatish Balay { 1267cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1268dfbe8321SBarry Smith PetscErrorCode ierr; 1269b24ad042SBarry Smith PetscInt nt; 1270cee3aa6bSSatish Balay 1271d64ed03dSBarry Smith PetscFunctionBegin; 1272e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1273273d9f13SBarry Smith if (nt != A->n) { 127429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 127547b4a8eaSLois Curfman McInnes } 1276e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1277273d9f13SBarry Smith if (nt != A->m) { 127829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 127947b4a8eaSLois Curfman McInnes } 128043a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1281f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 128243a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1283f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 128443a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 12853a40ed3dSBarry Smith PetscFunctionReturn(0); 1286cee3aa6bSSatish Balay } 1287cee3aa6bSSatish Balay 12884a2ae208SSatish Balay #undef __FUNCT__ 12894a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1290dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1291cee3aa6bSSatish Balay { 1292cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1293dfbe8321SBarry Smith PetscErrorCode ierr; 1294d64ed03dSBarry Smith 1295d64ed03dSBarry Smith PetscFunctionBegin; 129643a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1297f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 129843a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1299f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13003a40ed3dSBarry Smith PetscFunctionReturn(0); 1301cee3aa6bSSatish Balay } 1302cee3aa6bSSatish Balay 13034a2ae208SSatish Balay #undef __FUNCT__ 13044a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1305dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1306cee3aa6bSSatish Balay { 1307cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1308dfbe8321SBarry Smith PetscErrorCode ierr; 1309a5ff213dSBarry Smith PetscTruth merged; 1310cee3aa6bSSatish Balay 1311d64ed03dSBarry Smith PetscFunctionBegin; 1312a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1313cee3aa6bSSatish Balay /* do nondiagonal part */ 13147c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1315a5ff213dSBarry Smith if (!merged) { 1316cee3aa6bSSatish Balay /* send it on its way */ 1317537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1318cee3aa6bSSatish Balay /* do local part */ 13197c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1320cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1321a5ff213dSBarry Smith /* inserted in yy until the next line */ 1322639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1323a5ff213dSBarry Smith } else { 1324a5ff213dSBarry Smith /* do local part */ 1325a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1326a5ff213dSBarry Smith /* send it on its way */ 1327a5ff213dSBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1328a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1329a5ff213dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1330a5ff213dSBarry Smith } 13313a40ed3dSBarry Smith PetscFunctionReturn(0); 1332cee3aa6bSSatish Balay } 1333cee3aa6bSSatish Balay 13344a2ae208SSatish Balay #undef __FUNCT__ 13354a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1336dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1337cee3aa6bSSatish Balay { 1338cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1339dfbe8321SBarry Smith PetscErrorCode ierr; 1340cee3aa6bSSatish Balay 1341d64ed03dSBarry Smith PetscFunctionBegin; 1342cee3aa6bSSatish Balay /* do nondiagonal part */ 13437c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1344cee3aa6bSSatish Balay /* send it on its way */ 1345537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1346cee3aa6bSSatish Balay /* do local part */ 13477c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1348cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1349cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1350cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1351537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13523a40ed3dSBarry Smith PetscFunctionReturn(0); 1353cee3aa6bSSatish Balay } 1354cee3aa6bSSatish Balay 1355cee3aa6bSSatish Balay /* 1356cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1357cee3aa6bSSatish Balay diagonal block 1358cee3aa6bSSatish Balay */ 13594a2ae208SSatish Balay #undef __FUNCT__ 13604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1361dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1362cee3aa6bSSatish Balay { 1363cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1364dfbe8321SBarry Smith PetscErrorCode ierr; 1365d64ed03dSBarry Smith 1366d64ed03dSBarry Smith PetscFunctionBegin; 1367273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13683a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13693a40ed3dSBarry Smith PetscFunctionReturn(0); 1370cee3aa6bSSatish Balay } 1371cee3aa6bSSatish Balay 13724a2ae208SSatish Balay #undef __FUNCT__ 13734a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1374dfbe8321SBarry Smith PetscErrorCode MatScale_MPIBAIJ(const PetscScalar *aa,Mat A) 1375cee3aa6bSSatish Balay { 1376cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1377dfbe8321SBarry Smith PetscErrorCode ierr; 1378d64ed03dSBarry Smith 1379d64ed03dSBarry Smith PetscFunctionBegin; 1380cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1381cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 13823a40ed3dSBarry Smith PetscFunctionReturn(0); 1383cee3aa6bSSatish Balay } 1384026e39d0SSatish Balay 13854a2ae208SSatish Balay #undef __FUNCT__ 13864a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1387b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1388acdf5bf4SSatish Balay { 1389acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 139087828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 13916849ba73SBarry Smith PetscErrorCode ierr; 1392521d7252SBarry Smith PetscInt bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1393b24ad042SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1394b24ad042SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1395acdf5bf4SSatish Balay 1396d64ed03dSBarry Smith PetscFunctionBegin; 1397abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1398acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1399acdf5bf4SSatish Balay 1400acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1401acdf5bf4SSatish Balay /* 1402acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1403acdf5bf4SSatish Balay */ 1404acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1405b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1406bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1407acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1408acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1409acdf5bf4SSatish Balay } 1410b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1411b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1412acdf5bf4SSatish Balay } 1413acdf5bf4SSatish Balay 141429bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1415d9d09a02SSatish Balay lrow = row - brstart; 1416acdf5bf4SSatish Balay 1417acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1418acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1419acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1420f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1421f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1422acdf5bf4SSatish Balay nztot = nzA + nzB; 1423acdf5bf4SSatish Balay 1424acdf5bf4SSatish Balay cmap = mat->garray; 1425acdf5bf4SSatish Balay if (v || idx) { 1426acdf5bf4SSatish Balay if (nztot) { 1427acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1428b24ad042SBarry Smith PetscInt imark = -1; 1429acdf5bf4SSatish Balay if (v) { 1430acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1431acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1432d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1433acdf5bf4SSatish Balay else break; 1434acdf5bf4SSatish Balay } 1435acdf5bf4SSatish Balay imark = i; 1436acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1437acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1438acdf5bf4SSatish Balay } 1439acdf5bf4SSatish Balay if (idx) { 1440acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1441acdf5bf4SSatish Balay if (imark > -1) { 1442acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1443bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1444acdf5bf4SSatish Balay } 1445acdf5bf4SSatish Balay } else { 1446acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1447d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1448d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1449acdf5bf4SSatish Balay else break; 1450acdf5bf4SSatish Balay } 1451acdf5bf4SSatish Balay imark = i; 1452acdf5bf4SSatish Balay } 1453d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1454d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1455acdf5bf4SSatish Balay } 1456d64ed03dSBarry Smith } else { 1457d212a18eSSatish Balay if (idx) *idx = 0; 1458d212a18eSSatish Balay if (v) *v = 0; 1459d212a18eSSatish Balay } 1460acdf5bf4SSatish Balay } 1461acdf5bf4SSatish Balay *nz = nztot; 1462f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1463f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14643a40ed3dSBarry Smith PetscFunctionReturn(0); 1465acdf5bf4SSatish Balay } 1466acdf5bf4SSatish Balay 14674a2ae208SSatish Balay #undef __FUNCT__ 14684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1469b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1470acdf5bf4SSatish Balay { 1471acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1472d64ed03dSBarry Smith 1473d64ed03dSBarry Smith PetscFunctionBegin; 1474abc0a331SBarry Smith if (!baij->getrowactive) { 147529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1476acdf5bf4SSatish Balay } 1477acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14783a40ed3dSBarry Smith PetscFunctionReturn(0); 1479acdf5bf4SSatish Balay } 1480acdf5bf4SSatish Balay 14814a2ae208SSatish Balay #undef __FUNCT__ 14824a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1483dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 148458667388SSatish Balay { 148558667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1486dfbe8321SBarry Smith PetscErrorCode ierr; 1487d64ed03dSBarry Smith 1488d64ed03dSBarry Smith PetscFunctionBegin; 148958667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 149058667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14913a40ed3dSBarry Smith PetscFunctionReturn(0); 149258667388SSatish Balay } 14930ac07820SSatish Balay 14944a2ae208SSatish Balay #undef __FUNCT__ 14954a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1496dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14970ac07820SSatish Balay { 14984e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14994e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1500dfbe8321SBarry Smith PetscErrorCode ierr; 1501329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15020ac07820SSatish Balay 1503d64ed03dSBarry Smith PetscFunctionBegin; 1504521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 15054e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 15060e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1507de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 15084e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 15090e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1510de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 15110ac07820SSatish Balay if (flag == MAT_LOCAL) { 15124e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15134e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15144e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15154e220ebcSLois Curfman McInnes info->memory = isend[3]; 15164e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15170ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1518d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 15194e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15204e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15214e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15224e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15234e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15240ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1525d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 15264e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15274e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15284e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15294e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15304e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1531d41123aaSBarry Smith } else { 153277431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15330ac07820SSatish Balay } 1534f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1535f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1536f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1537f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 15384e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15394e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15404e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15413a40ed3dSBarry Smith PetscFunctionReturn(0); 15420ac07820SSatish Balay } 15430ac07820SSatish Balay 15444a2ae208SSatish Balay #undef __FUNCT__ 15454a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1546dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op) 154758667388SSatish Balay { 154858667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1549dfbe8321SBarry Smith PetscErrorCode ierr; 155058667388SSatish Balay 1551d64ed03dSBarry Smith PetscFunctionBegin; 155212c028f9SKris Buschelman switch (op) { 155312c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 155412c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 155512c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 155612c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 155712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 155812c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 155912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 156098305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 156198305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 156212c028f9SKris Buschelman break; 156312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15647c922b88SBarry Smith a->roworiented = PETSC_TRUE; 156598305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 156698305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 156712c028f9SKris Buschelman break; 156812c028f9SKris Buschelman case MAT_ROWS_SORTED: 156912c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 157012c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1571b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 157212c028f9SKris Buschelman break; 157312c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 15747c922b88SBarry Smith a->roworiented = PETSC_FALSE; 157598305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 157698305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 157712c028f9SKris Buschelman break; 157812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15797c922b88SBarry Smith a->donotstash = PETSC_TRUE; 158012c028f9SKris Buschelman break; 158112c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 158229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 158312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15847c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 158512c028f9SKris Buschelman break; 158677e54ba9SKris Buschelman case MAT_SYMMETRIC: 158777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15882188ac68SBarry Smith case MAT_HERMITIAN: 15892188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 15902188ac68SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 15912188ac68SBarry Smith break; 15929a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 15939a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 15949a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 15959a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 159677e54ba9SKris Buschelman break; 159712c028f9SKris Buschelman default: 159829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1599d64ed03dSBarry Smith } 16003a40ed3dSBarry Smith PetscFunctionReturn(0); 160158667388SSatish Balay } 160258667388SSatish Balay 16034a2ae208SSatish Balay #undef __FUNCT__ 16044a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1605dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout) 16060ac07820SSatish Balay { 16070ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16080ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16090ac07820SSatish Balay Mat B; 1610dfbe8321SBarry Smith PetscErrorCode ierr; 1611b24ad042SBarry Smith PetscInt M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col; 1612521d7252SBarry Smith PetscInt bs=A->bs,mbs=baij->mbs; 16133eda8832SBarry Smith MatScalar *a; 16140ac07820SSatish Balay 1615d64ed03dSBarry Smith PetscFunctionBegin; 161629bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1617f204ca49SKris Buschelman ierr = MatCreate(A->comm,A->n,A->m,N,M,&B);CHKERRQ(ierr); 1618f204ca49SKris Buschelman ierr = MatSetType(B,A->type_name);CHKERRQ(ierr); 1619521d7252SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 16200ac07820SSatish Balay 16210ac07820SSatish Balay /* copy over the A part */ 16220ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16230ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1624b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16250ac07820SSatish Balay 16260ac07820SSatish Balay for (i=0; i<mbs; i++) { 16270ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16280ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16290ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16300ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 16310ac07820SSatish Balay for (k=0; k<bs; k++) { 163293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16330ac07820SSatish Balay col++; a += bs; 16340ac07820SSatish Balay } 16350ac07820SSatish Balay } 16360ac07820SSatish Balay } 16370ac07820SSatish Balay /* copy over the B part */ 16380ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16390ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16400ac07820SSatish Balay for (i=0; i<mbs; i++) { 16410ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16420ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16430ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16440ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16450ac07820SSatish Balay for (k=0; k<bs; k++) { 164693fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16470ac07820SSatish Balay col++; a += bs; 16480ac07820SSatish Balay } 16490ac07820SSatish Balay } 16500ac07820SSatish Balay } 1651606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16520ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16530ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16540ac07820SSatish Balay 16557c922b88SBarry Smith if (matout) { 16560ac07820SSatish Balay *matout = B; 16570ac07820SSatish Balay } else { 1658273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16590ac07820SSatish Balay } 16603a40ed3dSBarry Smith PetscFunctionReturn(0); 16610ac07820SSatish Balay } 16620e95ebc0SSatish Balay 16634a2ae208SSatish Balay #undef __FUNCT__ 16644a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1665dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16660e95ebc0SSatish Balay { 166736c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 166836c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1669dfbe8321SBarry Smith PetscErrorCode ierr; 1670b24ad042SBarry Smith PetscInt s1,s2,s3; 16710e95ebc0SSatish Balay 1672d64ed03dSBarry Smith PetscFunctionBegin; 167336c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 167436c4a09eSSatish Balay if (rr) { 167536c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 167629bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 167736c4a09eSSatish Balay /* Overlap communication with computation. */ 167836c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 167936c4a09eSSatish Balay } 16800e95ebc0SSatish Balay if (ll) { 16810e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 168229bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1683a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16840e95ebc0SSatish Balay } 168536c4a09eSSatish Balay /* scale the diagonal block */ 168636c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 168736c4a09eSSatish Balay 168836c4a09eSSatish Balay if (rr) { 168936c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 169036c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1691a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 169236c4a09eSSatish Balay } 169336c4a09eSSatish Balay 16943a40ed3dSBarry Smith PetscFunctionReturn(0); 16950e95ebc0SSatish Balay } 16960e95ebc0SSatish Balay 16974a2ae208SSatish Balay #undef __FUNCT__ 16984a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1699dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,IS is,const PetscScalar *diag) 17000ac07820SSatish Balay { 17010ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 17026849ba73SBarry Smith PetscErrorCode ierr; 1703b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1704b24ad042SBarry Smith PetscInt i,N,*rows,*owners = l->rowners; 1705b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1706b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 17076543fbbaSBarry Smith PetscInt *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1; 1708521d7252SBarry Smith PetscInt *lens,*lrows,*values,bs=A->bs,rstart_bs=l->rstart_bs; 17090ac07820SSatish Balay MPI_Comm comm = A->comm; 17100ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 17110ac07820SSatish Balay MPI_Status recv_status,*send_status; 17120ac07820SSatish Balay IS istmp; 17136543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17146543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 17156543fbbaSBarry Smith #endif 17160ac07820SSatish Balay 1717d64ed03dSBarry Smith PetscFunctionBegin; 1718f14a1c24SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 17190ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 17200ac07820SSatish Balay 17210ac07820SSatish Balay /* first count number of contributors to each processor */ 1722b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1723b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1724b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 17256543fbbaSBarry Smith j = 0; 17260ac07820SSatish Balay for (i=0; i<N; i++) { 17276543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 17286543fbbaSBarry Smith lastidx = idx; 17296543fbbaSBarry Smith for (; j<size; j++) { 17300ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 17316543fbbaSBarry Smith nprocs[2*j]++; 17326543fbbaSBarry Smith nprocs[2*j+1] = 1; 17336543fbbaSBarry Smith owner[i] = j; 17346543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17356543fbbaSBarry Smith found = PETSC_TRUE; 17366543fbbaSBarry Smith #endif 17376543fbbaSBarry Smith break; 17380ac07820SSatish Balay } 17390ac07820SSatish Balay } 17406543fbbaSBarry Smith #if defined(PETSC_DEBUG) 174129bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 17426543fbbaSBarry Smith found = PETSC_FALSE; 17436543fbbaSBarry Smith #endif 17440ac07820SSatish Balay } 1745c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 17460ac07820SSatish Balay 17470ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1748c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 17490ac07820SSatish Balay 17500ac07820SSatish Balay /* post receives: */ 1751b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1752b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17530ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1754b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17550ac07820SSatish Balay } 17560ac07820SSatish Balay 17570ac07820SSatish Balay /* do sends: 17580ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17590ac07820SSatish Balay the ith processor 17600ac07820SSatish Balay */ 1761b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1762b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1763b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 17640ac07820SSatish Balay starts[0] = 0; 1765c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17660ac07820SSatish Balay for (i=0; i<N; i++) { 17670ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17680ac07820SSatish Balay } 17696831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 17700ac07820SSatish Balay 17710ac07820SSatish Balay starts[0] = 0; 1772c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17730ac07820SSatish Balay count = 0; 17740ac07820SSatish Balay for (i=0; i<size; i++) { 1775c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1776b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17770ac07820SSatish Balay } 17780ac07820SSatish Balay } 1779606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17800ac07820SSatish Balay 17810ac07820SSatish Balay base = owners[rank]*bs; 17820ac07820SSatish Balay 17830ac07820SSatish Balay /* wait on receives */ 1784b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 17850ac07820SSatish Balay source = lens + nrecvs; 17860ac07820SSatish Balay count = nrecvs; slen = 0; 17870ac07820SSatish Balay while (count) { 1788ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17890ac07820SSatish Balay /* unpack receives into our local space */ 1790b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 17910ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17920ac07820SSatish Balay lens[imdex] = n; 17930ac07820SSatish Balay slen += n; 17940ac07820SSatish Balay count--; 17950ac07820SSatish Balay } 1796606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17970ac07820SSatish Balay 17980ac07820SSatish Balay /* move the data into the send scatter */ 1799b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 18000ac07820SSatish Balay count = 0; 18010ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 18020ac07820SSatish Balay values = rvalues + i*nmax; 18030ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 18040ac07820SSatish Balay lrows[count++] = values[j] - base; 18050ac07820SSatish Balay } 18060ac07820SSatish Balay } 1807606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1808606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1809606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1810606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 18110ac07820SSatish Balay 18120ac07820SSatish Balay /* actually zap the local rows */ 1813029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 181452e6d16bSBarry Smith ierr = PetscLogObjectParent(A,istmp);CHKERRQ(ierr); 1815a07cd24cSSatish Balay 181672dacd9aSBarry Smith /* 181772dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 181872dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 181972dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 182072dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 182172dacd9aSBarry Smith 182272dacd9aSBarry Smith Contributed by: Mathew Knepley 182372dacd9aSBarry Smith */ 18249c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 18256fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 18269c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 18276fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 18289c957beeSSatish Balay } else if (diag) { 18296fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1830fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 183129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1832fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 18336525c446SSatish Balay } 1834a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1835a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 18363f11ea53SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1837a07cd24cSSatish Balay } 1838a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1839a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18409c957beeSSatish Balay } else { 18416fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1842a07cd24cSSatish Balay } 18439c957beeSSatish Balay 18449c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1845606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1846a07cd24cSSatish Balay 18470ac07820SSatish Balay /* wait on sends */ 18480ac07820SSatish Balay if (nsends) { 184982502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1850ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1851606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18520ac07820SSatish Balay } 1853606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1854606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18550ac07820SSatish Balay 18563a40ed3dSBarry Smith PetscFunctionReturn(0); 18570ac07820SSatish Balay } 185872dacd9aSBarry Smith 18594a2ae208SSatish Balay #undef __FUNCT__ 18604a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ" 1861dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPIBAIJ(Mat A) 1862ba4ca20aSSatish Balay { 1863ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 186425fdafccSSatish Balay MPI_Comm comm = A->comm; 1865b24ad042SBarry Smith static PetscTruth called = PETSC_FALSE; 1866dfbe8321SBarry Smith PetscErrorCode ierr; 1867ba4ca20aSSatish Balay 1868d64ed03dSBarry Smith PetscFunctionBegin; 18693a40ed3dSBarry Smith if (!a->rank) { 18703a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 187125fdafccSSatish Balay } 1872b24ad042SBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1873d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1874d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 18753a40ed3dSBarry Smith PetscFunctionReturn(0); 1876ba4ca20aSSatish Balay } 18770ac07820SSatish Balay 18784a2ae208SSatish Balay #undef __FUNCT__ 18794a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1880dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1881bb5a7306SBarry Smith { 1882bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1883dfbe8321SBarry Smith PetscErrorCode ierr; 1884d64ed03dSBarry Smith 1885d64ed03dSBarry Smith PetscFunctionBegin; 1886bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18873a40ed3dSBarry Smith PetscFunctionReturn(0); 1888bb5a7306SBarry Smith } 1889bb5a7306SBarry Smith 18906849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18910ac07820SSatish Balay 18924a2ae208SSatish Balay #undef __FUNCT__ 18934a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1894dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18957fc3c18eSBarry Smith { 18967fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18977fc3c18eSBarry Smith Mat a,b,c,d; 18987fc3c18eSBarry Smith PetscTruth flg; 1899dfbe8321SBarry Smith PetscErrorCode ierr; 19007fc3c18eSBarry Smith 19017fc3c18eSBarry Smith PetscFunctionBegin; 19027fc3c18eSBarry Smith a = matA->A; b = matA->B; 19037fc3c18eSBarry Smith c = matB->A; d = matB->B; 19047fc3c18eSBarry Smith 19057fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1906abc0a331SBarry Smith if (flg) { 19077fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 19087fc3c18eSBarry Smith } 19097fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 19107fc3c18eSBarry Smith PetscFunctionReturn(0); 19117fc3c18eSBarry Smith } 19127fc3c18eSBarry Smith 1913273d9f13SBarry Smith 19144a2ae208SSatish Balay #undef __FUNCT__ 19154a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1916dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1917273d9f13SBarry Smith { 1918dfbe8321SBarry Smith PetscErrorCode ierr; 1919273d9f13SBarry Smith 1920273d9f13SBarry Smith PetscFunctionBegin; 1921273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1922273d9f13SBarry Smith PetscFunctionReturn(0); 1923273d9f13SBarry Smith } 1924273d9f13SBarry Smith 192579bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1926cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1927cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1928cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1929cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1930cc2dc46cSBarry Smith MatMult_MPIBAIJ, 193197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 19327c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 19337c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1934cc2dc46cSBarry Smith 0, 1935cc2dc46cSBarry Smith 0, 1936cc2dc46cSBarry Smith 0, 193797304618SKris Buschelman /*10*/ 0, 1938cc2dc46cSBarry Smith 0, 1939cc2dc46cSBarry Smith 0, 1940cc2dc46cSBarry Smith 0, 1941cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 194297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 19437fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1944cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1945cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1946cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 194797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 1948cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1949cc2dc46cSBarry Smith 0, 1950cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1951cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 195297304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ, 1953cc2dc46cSBarry Smith 0, 1954cc2dc46cSBarry Smith 0, 1955cc2dc46cSBarry Smith 0, 1956cc2dc46cSBarry Smith 0, 195797304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ, 1958273d9f13SBarry Smith 0, 1959cc2dc46cSBarry Smith 0, 1960cc2dc46cSBarry Smith 0, 1961cc2dc46cSBarry Smith 0, 196297304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ, 1963cc2dc46cSBarry Smith 0, 1964cc2dc46cSBarry Smith 0, 1965cc2dc46cSBarry Smith 0, 1966cc2dc46cSBarry Smith 0, 196797304618SKris Buschelman /*40*/ 0, 1968cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1969cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1970cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1971cc2dc46cSBarry Smith 0, 197297304618SKris Buschelman /*45*/ MatPrintHelp_MPIBAIJ, 1973cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1974cc2dc46cSBarry Smith 0, 1975cc2dc46cSBarry Smith 0, 1976cc2dc46cSBarry Smith 0, 1977521d7252SBarry Smith /*50*/ 0, 1978cc2dc46cSBarry Smith 0, 1979cc2dc46cSBarry Smith 0, 1980cc2dc46cSBarry Smith 0, 1981cc2dc46cSBarry Smith 0, 198297304618SKris Buschelman /*55*/ 0, 1983cc2dc46cSBarry Smith 0, 1984cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1985cc2dc46cSBarry Smith 0, 1986cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 198797304618SKris Buschelman /*60*/ 0, 1988f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 1989f14a1c24SBarry Smith MatView_MPIBAIJ, 19908a124369SBarry Smith MatGetPetscMaps_Petsc, 19917843d17aSBarry Smith 0, 199297304618SKris Buschelman /*65*/ 0, 19937843d17aSBarry Smith 0, 19947843d17aSBarry Smith 0, 19957843d17aSBarry Smith 0, 19967843d17aSBarry Smith 0, 199797304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ, 19987843d17aSBarry Smith 0, 199997304618SKris Buschelman 0, 200097304618SKris Buschelman 0, 200197304618SKris Buschelman 0, 200297304618SKris Buschelman /*75*/ 0, 200397304618SKris Buschelman 0, 200497304618SKris Buschelman 0, 200597304618SKris Buschelman 0, 200697304618SKris Buschelman 0, 200797304618SKris Buschelman /*80*/ 0, 200897304618SKris Buschelman 0, 200997304618SKris Buschelman 0, 201097304618SKris Buschelman 0, 2011865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2012865e5f61SKris Buschelman /*85*/ 0, 2013865e5f61SKris Buschelman 0, 2014865e5f61SKris Buschelman 0, 2015865e5f61SKris Buschelman 0, 2016865e5f61SKris Buschelman 0, 2017865e5f61SKris Buschelman /*90*/ 0, 2018865e5f61SKris Buschelman 0, 2019865e5f61SKris Buschelman 0, 2020865e5f61SKris Buschelman 0, 2021865e5f61SKris Buschelman 0, 2022865e5f61SKris Buschelman /*95*/ 0, 2023865e5f61SKris Buschelman 0, 2024865e5f61SKris Buschelman 0, 2025865e5f61SKris Buschelman 0}; 202679bdfe76SSatish Balay 20275ef9f2a5SBarry Smith 2028e18c124aSSatish Balay EXTERN_C_BEGIN 20294a2ae208SSatish Balay #undef __FUNCT__ 20304a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2031dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 20325ef9f2a5SBarry Smith { 20335ef9f2a5SBarry Smith PetscFunctionBegin; 20345ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 20355ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 20365ef9f2a5SBarry Smith PetscFunctionReturn(0); 20375ef9f2a5SBarry Smith } 2038e18c124aSSatish Balay EXTERN_C_END 203979bdfe76SSatish Balay 2040273d9f13SBarry Smith EXTERN_C_BEGIN 2041*ceb03754SKris Buschelman extern int MatConvert_MPIBAIJ_MPISBAIJ(Mat,const MatType,MatReuse,Mat*); 2042d94109b8SHong Zhang EXTERN_C_END 2043d94109b8SHong Zhang 2044aac34f13SBarry Smith #undef __FUNCT__ 2045aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2046aac34f13SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt I[],const PetscInt J[],const PetscScalar v[]) 2047aac34f13SBarry Smith { 2048aac34f13SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2049aac34f13SBarry Smith PetscInt m = B->m/bs,cstart = b->cstart, cend = b->cend,j,nnz,i,d; 2050aac34f13SBarry Smith PetscInt *d_nnz,*o_nnz,nnz_max = 0,rstart = b->rstart,ii; 2051aac34f13SBarry Smith const PetscInt *JJ; 2052aac34f13SBarry Smith PetscScalar *values; 2053aac34f13SBarry Smith PetscErrorCode ierr; 2054aac34f13SBarry Smith 2055aac34f13SBarry Smith PetscFunctionBegin; 2056aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2057aac34f13SBarry Smith if (I[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"I[0] must be 0 it is %D",I[0]); 2058aac34f13SBarry Smith #endif 2059aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2060aac34f13SBarry Smith o_nnz = d_nnz + m; 2061aac34f13SBarry Smith 2062aac34f13SBarry Smith for (i=0; i<m; i++) { 2063aac34f13SBarry Smith nnz = I[i+1]- I[i]; 2064aac34f13SBarry Smith JJ = J + I[i]; 2065aac34f13SBarry Smith nnz_max = PetscMax(nnz_max,nnz); 2066aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2067aac34f13SBarry Smith if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz); 2068aac34f13SBarry Smith #endif 2069aac34f13SBarry Smith for (j=0; j<nnz; j++) { 2070aac34f13SBarry Smith if (*JJ >= cstart) break; 2071aac34f13SBarry Smith JJ++; 2072aac34f13SBarry Smith } 2073aac34f13SBarry Smith d = 0; 2074aac34f13SBarry Smith for (; j<nnz; j++) { 2075aac34f13SBarry Smith if (*JJ++ >= cend) break; 2076aac34f13SBarry Smith d++; 2077aac34f13SBarry Smith } 2078aac34f13SBarry Smith d_nnz[i] = d; 2079aac34f13SBarry Smith o_nnz[i] = nnz - d; 2080aac34f13SBarry Smith } 2081aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2082aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2083aac34f13SBarry Smith 2084aac34f13SBarry Smith if (v) values = (PetscScalar*)v; 2085aac34f13SBarry Smith else { 2086aac34f13SBarry Smith ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2087aac34f13SBarry Smith ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2088aac34f13SBarry Smith } 2089aac34f13SBarry Smith 2090aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2091aac34f13SBarry Smith for (i=0; i<m; i++) { 2092aac34f13SBarry Smith ii = i + rstart; 2093aac34f13SBarry Smith nnz = I[i+1]- I[i]; 2094aac34f13SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+I[i],values,INSERT_VALUES);CHKERRQ(ierr); 2095aac34f13SBarry Smith } 2096aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2097aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2098aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr); 2099aac34f13SBarry Smith 2100aac34f13SBarry Smith if (!v) { 2101aac34f13SBarry Smith ierr = PetscFree(values);CHKERRQ(ierr); 2102aac34f13SBarry Smith } 2103aac34f13SBarry Smith PetscFunctionReturn(0); 2104aac34f13SBarry Smith } 2105aac34f13SBarry Smith 2106aac34f13SBarry Smith #undef __FUNCT__ 2107aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2108aac34f13SBarry Smith /*@C 2109aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2110aac34f13SBarry Smith (the default parallel PETSc format). 2111aac34f13SBarry Smith 2112aac34f13SBarry Smith Collective on MPI_Comm 2113aac34f13SBarry Smith 2114aac34f13SBarry Smith Input Parameters: 2115aac34f13SBarry Smith + A - the matrix 2116aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2117aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2118aac34f13SBarry Smith - v - optional values in the matrix 2119aac34f13SBarry Smith 2120aac34f13SBarry Smith Level: developer 2121aac34f13SBarry Smith 2122aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2123aac34f13SBarry Smith 2124aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2125aac34f13SBarry Smith @*/ 2126aac34f13SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2127aac34f13SBarry Smith { 2128aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2129aac34f13SBarry Smith 2130aac34f13SBarry Smith PetscFunctionBegin; 2131aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2132aac34f13SBarry Smith if (f) { 2133aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2134aac34f13SBarry Smith } 2135aac34f13SBarry Smith PetscFunctionReturn(0); 2136aac34f13SBarry Smith } 2137aac34f13SBarry Smith 2138d94109b8SHong Zhang EXTERN_C_BEGIN 21394a2ae208SSatish Balay #undef __FUNCT__ 2140a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2141b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2142a23d5eceSKris Buschelman { 2143a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2144dfbe8321SBarry Smith PetscErrorCode ierr; 2145b24ad042SBarry Smith PetscInt i; 2146a23d5eceSKris Buschelman 2147a23d5eceSKris Buschelman PetscFunctionBegin; 2148a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 2149a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2150a23d5eceSKris Buschelman 2151a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2152a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2153a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 215477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 215577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2156a23d5eceSKris Buschelman if (d_nnz) { 2157a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 215877431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2159a23d5eceSKris Buschelman } 2160a23d5eceSKris Buschelman } 2161a23d5eceSKris Buschelman if (o_nnz) { 2162a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 216377431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2164a23d5eceSKris Buschelman } 2165a23d5eceSKris Buschelman } 2166a23d5eceSKris Buschelman 2167a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 2168a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 2169a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 2170a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 2171a23d5eceSKris Buschelman 2172a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2173521d7252SBarry Smith B->bs = bs; 2174a23d5eceSKris Buschelman b->bs2 = bs*bs; 2175a23d5eceSKris Buschelman b->mbs = B->m/bs; 2176a23d5eceSKris Buschelman b->nbs = B->n/bs; 2177a23d5eceSKris Buschelman b->Mbs = B->M/bs; 2178a23d5eceSKris Buschelman b->Nbs = B->N/bs; 2179a23d5eceSKris Buschelman 2180b24ad042SBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 2181a23d5eceSKris Buschelman b->rowners[0] = 0; 2182a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2183a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 2184a23d5eceSKris Buschelman } 2185a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 2186a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 2187a23d5eceSKris Buschelman 2188b24ad042SBarry Smith ierr = MPI_Allgather(&b->nbs,1,MPIU_INT,b->cowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 2189a23d5eceSKris Buschelman b->cowners[0] = 0; 2190a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2191a23d5eceSKris Buschelman b->cowners[i] += b->cowners[i-1]; 2192a23d5eceSKris Buschelman } 2193a23d5eceSKris Buschelman b->cstart = b->cowners[b->rank]; 2194a23d5eceSKris Buschelman b->cend = b->cowners[b->rank+1]; 2195a23d5eceSKris Buschelman 2196a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2197a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 2198a23d5eceSKris Buschelman } 2199a23d5eceSKris Buschelman b->rstart_bs = b->rstart*bs; 2200a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 2201a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 2202a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 2203a23d5eceSKris Buschelman 22049c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->n,B->m,B->n,&b->A);CHKERRQ(ierr); 22059c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 2206c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 220752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 22089c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->N,B->m,B->N,&b->B);CHKERRQ(ierr); 22099c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2210c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 221152e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 2212c60e587dSKris Buschelman 2213a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2214a23d5eceSKris Buschelman 2215a23d5eceSKris Buschelman PetscFunctionReturn(0); 2216a23d5eceSKris Buschelman } 2217a23d5eceSKris Buschelman EXTERN_C_END 2218a23d5eceSKris Buschelman 2219a23d5eceSKris Buschelman EXTERN_C_BEGIN 2220dfbe8321SBarry Smith EXTERN PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2221dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 222292b32695SKris Buschelman EXTERN_C_END 22235bf65638SKris Buschelman 22240bad9183SKris Buschelman /*MC 2225fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 22260bad9183SKris Buschelman 22270bad9183SKris Buschelman Options Database Keys: 22280bad9183SKris Buschelman . -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 22290bad9183SKris Buschelman 22300bad9183SKris Buschelman Level: beginner 22310bad9183SKris Buschelman 22320bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 22330bad9183SKris Buschelman M*/ 22340bad9183SKris Buschelman 223592b32695SKris Buschelman EXTERN_C_BEGIN 2236a23d5eceSKris Buschelman #undef __FUNCT__ 22374a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2238dfbe8321SBarry Smith PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2239273d9f13SBarry Smith { 2240273d9f13SBarry Smith Mat_MPIBAIJ *b; 2241dfbe8321SBarry Smith PetscErrorCode ierr; 2242273d9f13SBarry Smith PetscTruth flg; 2243273d9f13SBarry Smith 2244273d9f13SBarry Smith PetscFunctionBegin; 224582502324SSatish Balay ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr); 224682502324SSatish Balay B->data = (void*)b; 224782502324SSatish Balay 2248273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2249273d9f13SBarry Smith B->mapping = 0; 2250273d9f13SBarry Smith B->factor = 0; 2251273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2252273d9f13SBarry Smith 2253273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2254273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 2255273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 2256273d9f13SBarry Smith 2257273d9f13SBarry Smith /* build local table of row and column ownerships */ 2258b24ad042SBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 225952e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2260273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 2261273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2262273d9f13SBarry Smith 2263273d9f13SBarry Smith /* build cache for off array entries formed */ 2264273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 2265273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2266273d9f13SBarry Smith b->colmap = PETSC_NULL; 2267273d9f13SBarry Smith b->garray = PETSC_NULL; 2268273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2269273d9f13SBarry Smith 2270cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2271273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 227264a35ccbSBarry Smith b->setvalueslen = 0; 2273273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2274273d9f13SBarry Smith #endif 2275273d9f13SBarry Smith 2276273d9f13SBarry Smith /* stuff used in block assembly */ 2277273d9f13SBarry Smith b->barray = 0; 2278273d9f13SBarry Smith 2279273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2280273d9f13SBarry Smith b->lvec = 0; 2281273d9f13SBarry Smith b->Mvctx = 0; 2282273d9f13SBarry Smith 2283273d9f13SBarry Smith /* stuff for MatGetRow() */ 2284273d9f13SBarry Smith b->rowindices = 0; 2285273d9f13SBarry Smith b->rowvalues = 0; 2286273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2287273d9f13SBarry Smith 2288273d9f13SBarry Smith /* hash table stuff */ 2289273d9f13SBarry Smith b->ht = 0; 2290273d9f13SBarry Smith b->hd = 0; 2291273d9f13SBarry Smith b->ht_size = 0; 2292273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2293273d9f13SBarry Smith b->ht_fact = 0; 2294273d9f13SBarry Smith b->ht_total_ct = 0; 2295273d9f13SBarry Smith b->ht_insert_ct = 0; 2296273d9f13SBarry Smith 2297b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2298273d9f13SBarry Smith if (flg) { 2299f6275e2eSBarry Smith PetscReal fact = 1.39; 2300273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 230187828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2302273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2303273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2304b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2305273d9f13SBarry Smith } 2306273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2307273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2308273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2309273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2310273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2311273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2312273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2313273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2314273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2315a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2316a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2317a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2318aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 2319aac34f13SBarry Smith "MatMPIBAIJSetPreallocationCSR_MPIAIJ", 2320aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 232192b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 232292b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 232392b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 23245bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 23255bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 23265bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2327273d9f13SBarry Smith PetscFunctionReturn(0); 2328273d9f13SBarry Smith } 2329273d9f13SBarry Smith EXTERN_C_END 2330273d9f13SBarry Smith 2331209238afSKris Buschelman /*MC 2332002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2333209238afSKris Buschelman 2334209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2335209238afSKris Buschelman and MATMPIBAIJ otherwise. 2336209238afSKris Buschelman 2337209238afSKris Buschelman Options Database Keys: 2338209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2339209238afSKris Buschelman 2340209238afSKris Buschelman Level: beginner 2341209238afSKris Buschelman 2342aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2343209238afSKris Buschelman M*/ 2344209238afSKris Buschelman 2345209238afSKris Buschelman EXTERN_C_BEGIN 2346209238afSKris Buschelman #undef __FUNCT__ 2347209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2348dfbe8321SBarry Smith PetscErrorCode MatCreate_BAIJ(Mat A) 2349dfbe8321SBarry Smith { 23506849ba73SBarry Smith PetscErrorCode ierr; 2351b24ad042SBarry Smith PetscMPIInt size; 2352209238afSKris Buschelman 2353209238afSKris Buschelman PetscFunctionBegin; 2354209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr); 2355209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 2356209238afSKris Buschelman if (size == 1) { 2357209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2358209238afSKris Buschelman } else { 2359209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2360209238afSKris Buschelman } 2361209238afSKris Buschelman PetscFunctionReturn(0); 2362209238afSKris Buschelman } 2363209238afSKris Buschelman EXTERN_C_END 2364209238afSKris Buschelman 23654a2ae208SSatish Balay #undef __FUNCT__ 23664a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2367273d9f13SBarry Smith /*@C 2368aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2369273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2370273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2371273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2372273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2373273d9f13SBarry Smith 2374273d9f13SBarry Smith Collective on Mat 2375273d9f13SBarry Smith 2376273d9f13SBarry Smith Input Parameters: 2377273d9f13SBarry Smith + A - the matrix 2378273d9f13SBarry Smith . bs - size of blockk 2379273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2380273d9f13SBarry Smith submatrix (same for all local rows) 2381273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2382273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2383273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2384273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2385273d9f13SBarry Smith submatrix (same for all local rows). 2386273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2387273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2388273d9f13SBarry Smith each block row) or PETSC_NULL. 2389273d9f13SBarry Smith 239049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2391273d9f13SBarry Smith 2392273d9f13SBarry Smith Options Database Keys: 2393273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 2394273d9f13SBarry Smith block calculations (much slower) 2395273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 2396273d9f13SBarry Smith 2397273d9f13SBarry Smith Notes: 2398273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2399273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2400273d9f13SBarry Smith 2401273d9f13SBarry Smith Storage Information: 2402273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2403273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2404273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2405273d9f13SBarry Smith local matrix (a rectangular submatrix). 2406273d9f13SBarry Smith 2407273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2408273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2409273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2410273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2411273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2412273d9f13SBarry Smith 2413273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2414273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2415273d9f13SBarry Smith 2416273d9f13SBarry Smith .vb 2417273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2418273d9f13SBarry Smith ------------------- 2419273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2420273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2421273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2422273d9f13SBarry Smith ------------------- 2423273d9f13SBarry Smith .ve 2424273d9f13SBarry Smith 2425273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2426273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2427273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2428273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2429273d9f13SBarry Smith 2430273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2431273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2432273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2433273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2434273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2435273d9f13SBarry Smith matrices. 2436273d9f13SBarry Smith 2437273d9f13SBarry Smith Level: intermediate 2438273d9f13SBarry Smith 2439273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2440273d9f13SBarry Smith 2441aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 2442273d9f13SBarry Smith @*/ 2443b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2444273d9f13SBarry Smith { 2445b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2446273d9f13SBarry Smith 2447273d9f13SBarry Smith PetscFunctionBegin; 2448a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2449a23d5eceSKris Buschelman if (f) { 2450a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2451273d9f13SBarry Smith } 2452273d9f13SBarry Smith PetscFunctionReturn(0); 2453273d9f13SBarry Smith } 2454273d9f13SBarry Smith 24554a2ae208SSatish Balay #undef __FUNCT__ 24564a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 245779bdfe76SSatish Balay /*@C 245879bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 245979bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 246079bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 246179bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 246279bdfe76SSatish Balay performance can be increased by more than a factor of 50. 246379bdfe76SSatish Balay 2464db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2465db81eaa0SLois Curfman McInnes 246679bdfe76SSatish Balay Input Parameters: 2467db81eaa0SLois Curfman McInnes + comm - MPI communicator 246879bdfe76SSatish Balay . bs - size of blockk 246979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 247092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 247192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 247292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 247392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 247492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2475be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2476be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 247747a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 247879bdfe76SSatish Balay submatrix (same for all local rows) 247947a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 248092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2481db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 248247a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 248379bdfe76SSatish Balay submatrix (same for all local rows). 248447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 248592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 248692e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 248779bdfe76SSatish Balay 248879bdfe76SSatish Balay Output Parameter: 248979bdfe76SSatish Balay . A - the matrix 249079bdfe76SSatish Balay 2491db81eaa0SLois Curfman McInnes Options Database Keys: 2492db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 2493db81eaa0SLois Curfman McInnes block calculations (much slower) 2494db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 24953ffaccefSLois Curfman McInnes 2496b259b22eSLois Curfman McInnes Notes: 249749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 249849a6f317SBarry Smith 249947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 250047a75d0bSBarry Smith 250179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 250279bdfe76SSatish Balay (possibly both). 250379bdfe76SSatish Balay 2504be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2505be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2506be79a94dSBarry Smith 250779bdfe76SSatish Balay Storage Information: 250879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 250979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 251079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 251179bdfe76SSatish Balay local matrix (a rectangular submatrix). 251279bdfe76SSatish Balay 251379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 251479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 251579bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 251679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 251779bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 251879bdfe76SSatish Balay 251979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 252079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 252179bdfe76SSatish Balay 2522db81eaa0SLois Curfman McInnes .vb 2523db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2524db81eaa0SLois Curfman McInnes ------------------- 2525db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2526db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2527db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2528db81eaa0SLois Curfman McInnes ------------------- 2529db81eaa0SLois Curfman McInnes .ve 253079bdfe76SSatish Balay 253179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 253279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 253379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 253457b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 253579bdfe76SSatish Balay 2536d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2537d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 253879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 253992e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 254092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 25416da5968aSLois Curfman McInnes matrices. 254279bdfe76SSatish Balay 2543027ccd11SLois Curfman McInnes Level: intermediate 2544027ccd11SLois Curfman McInnes 254592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 254679bdfe76SSatish Balay 2547aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 254879bdfe76SSatish Balay @*/ 2549b24ad042SBarry Smith PetscErrorCode MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 255079bdfe76SSatish Balay { 25516849ba73SBarry Smith PetscErrorCode ierr; 2552b24ad042SBarry Smith PetscMPIInt size; 255379bdfe76SSatish Balay 2554d64ed03dSBarry Smith PetscFunctionBegin; 2555273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2556d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2557273d9f13SBarry Smith if (size > 1) { 2558273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2559273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2560273d9f13SBarry Smith } else { 2561273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2562273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 25633914022bSBarry Smith } 25643a40ed3dSBarry Smith PetscFunctionReturn(0); 256579bdfe76SSatish Balay } 2566026e39d0SSatish Balay 25674a2ae208SSatish Balay #undef __FUNCT__ 25684a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 25696849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 25700ac07820SSatish Balay { 25710ac07820SSatish Balay Mat mat; 25720ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2573dfbe8321SBarry Smith PetscErrorCode ierr; 2574b24ad042SBarry Smith PetscInt len=0; 25750ac07820SSatish Balay 2576d64ed03dSBarry Smith PetscFunctionBegin; 25770ac07820SSatish Balay *newmat = 0; 2578273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2579be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 25801d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 25817fff6886SHong Zhang 25824beb1cfeSHong Zhang mat->factor = matin->factor; 2583273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 25840ac07820SSatish Balay mat->assembled = PETSC_TRUE; 25857fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 25867fff6886SHong Zhang 2587273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 2588521d7252SBarry Smith mat->bs = matin->bs; 25890ac07820SSatish Balay a->bs2 = oldmat->bs2; 25900ac07820SSatish Balay a->mbs = oldmat->mbs; 25910ac07820SSatish Balay a->nbs = oldmat->nbs; 25920ac07820SSatish Balay a->Mbs = oldmat->Mbs; 25930ac07820SSatish Balay a->Nbs = oldmat->Nbs; 25940ac07820SSatish Balay 25950ac07820SSatish Balay a->rstart = oldmat->rstart; 25960ac07820SSatish Balay a->rend = oldmat->rend; 25970ac07820SSatish Balay a->cstart = oldmat->cstart; 25980ac07820SSatish Balay a->cend = oldmat->cend; 25990ac07820SSatish Balay a->size = oldmat->size; 26000ac07820SSatish Balay a->rank = oldmat->rank; 2601aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2602aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2603aef5e8e0SSatish Balay a->rowindices = 0; 26040ac07820SSatish Balay a->rowvalues = 0; 26050ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 260630793edcSSatish Balay a->barray = 0; 26073123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 26083123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 26093123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 26103123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 26110ac07820SSatish Balay 2612133cdb44SSatish Balay /* hash table stuff */ 2613133cdb44SSatish Balay a->ht = 0; 2614133cdb44SSatish Balay a->hd = 0; 2615133cdb44SSatish Balay a->ht_size = 0; 2616133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 261725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2618133cdb44SSatish Balay a->ht_total_ct = 0; 2619133cdb44SSatish Balay a->ht_insert_ct = 0; 2620133cdb44SSatish Balay 2621b24ad042SBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 26228798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2623521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 26240ac07820SSatish Balay if (oldmat->colmap) { 2625aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 26260f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 262748e59246SSatish Balay #else 2628b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 262952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2630b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 263148e59246SSatish Balay #endif 26320ac07820SSatish Balay } else a->colmap = 0; 26334beb1cfeSHong Zhang 26340ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2635b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 263652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2637b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 26380ac07820SSatish Balay } else a->garray = 0; 26390ac07820SSatish Balay 26400ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 264152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 26420ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 264352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 26447fff6886SHong Zhang 26452e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 264652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 26472e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 264852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2649b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 26500ac07820SSatish Balay *newmat = mat; 26514beb1cfeSHong Zhang 26523a40ed3dSBarry Smith PetscFunctionReturn(0); 26530ac07820SSatish Balay } 265457b952d6SSatish Balay 2655e090d566SSatish Balay #include "petscsys.h" 265657b952d6SSatish Balay 26574a2ae208SSatish Balay #undef __FUNCT__ 26584a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2659dfbe8321SBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 266057b952d6SSatish Balay { 266157b952d6SSatish Balay Mat A; 26626849ba73SBarry Smith PetscErrorCode ierr; 2663b24ad042SBarry Smith int fd; 2664b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 266587828ca2SBarry Smith PetscScalar *vals,*buf; 266657b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 266757b952d6SSatish Balay MPI_Status status; 2668b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2669b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2670dc231df0SBarry Smith PetscInt *locrowlens,*procsnz = 0,*browners; 2671dc231df0SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows; 2672dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 2673b24ad042SBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2674dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 267557b952d6SSatish Balay 2676d64ed03dSBarry Smith PetscFunctionBegin; 2677b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 267857b952d6SSatish Balay 2679d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2680d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 268157b952d6SSatish Balay if (!rank) { 2682b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2683e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2684552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 26856c5fab8fSBarry Smith } 2686d64ed03dSBarry Smith 2687b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 268857b952d6SSatish Balay M = header[1]; N = header[2]; 268957b952d6SSatish Balay 269029bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 269157b952d6SSatish Balay 269257b952d6SSatish Balay /* 269357b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 269457b952d6SSatish Balay divisible by the blocksize 269557b952d6SSatish Balay */ 269657b952d6SSatish Balay Mbs = M/bs; 2697dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 269857b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 269957b952d6SSatish Balay else Mbs++; 270057b952d6SSatish Balay if (extra_rows && !rank) { 2701b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 270257b952d6SSatish Balay } 2703537820f0SBarry Smith 270457b952d6SSatish Balay /* determine ownership of all rows */ 270557b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 270657b952d6SSatish Balay m = mbs*bs; 2707dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 2708b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 270957b952d6SSatish Balay rowners[0] = 0; 2710cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2711cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 271257b952d6SSatish Balay rstart = rowners[rank]; 271357b952d6SSatish Balay rend = rowners[rank+1]; 271457b952d6SSatish Balay 271557b952d6SSatish Balay /* distribute row lengths to all processors */ 2716dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 271757b952d6SSatish Balay if (!rank) { 2718dc231df0SBarry Smith mend = m; 2719dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 2720dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 2721dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 2722dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2723b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2724b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2725dc231df0SBarry Smith for (j=0; j<m; j++) { 2726dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 2727dc231df0SBarry Smith } 2728dc231df0SBarry Smith for (i=1; i<size; i++) { 2729dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 2730dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 2731dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 2732dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 2733dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 2734dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 273557b952d6SSatish Balay procsnz[i] += rowlengths[j]; 273657b952d6SSatish Balay } 2737dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 273857b952d6SSatish Balay } 2739606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2740dc231df0SBarry Smith } else { 2741dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2742dc231df0SBarry Smith } 274357b952d6SSatish Balay 2744dc231df0SBarry Smith if (!rank) { 274557b952d6SSatish Balay /* determine max buffer needed and allocate it */ 27468a8e0b3aSBarry Smith maxnz = procsnz[0]; 2747cdc0ba36SBarry Smith for (i=1; i<size; i++) { 274857b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 274957b952d6SSatish Balay } 2750b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 275157b952d6SSatish Balay 275257b952d6SSatish Balay /* read in my part of the matrix column indices */ 275357b952d6SSatish Balay nz = procsnz[0]; 2754b24ad042SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 275557b952d6SSatish Balay mycols = ibuf; 2756cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2757e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2758cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2759cee3aa6bSSatish Balay 276057b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 276157b952d6SSatish Balay for (i=1; i<size-1; i++) { 276257b952d6SSatish Balay nz = procsnz[i]; 2763e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2764b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 276557b952d6SSatish Balay } 276657b952d6SSatish Balay /* read in the stuff for the last proc */ 276757b952d6SSatish Balay if (size != 1) { 276857b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2769e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 277057b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2771b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 277257b952d6SSatish Balay } 2773606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2774d64ed03dSBarry Smith } else { 277557b952d6SSatish Balay /* determine buffer space needed for message */ 277657b952d6SSatish Balay nz = 0; 277757b952d6SSatish Balay for (i=0; i<m; i++) { 277857b952d6SSatish Balay nz += locrowlens[i]; 277957b952d6SSatish Balay } 2780b24ad042SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 278157b952d6SSatish Balay mycols = ibuf; 278257b952d6SSatish Balay /* receive message of column indices*/ 2783b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2784b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 278529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 278657b952d6SSatish Balay } 278757b952d6SSatish Balay 278857b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2789dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 2790dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 2791dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2792dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2793dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 279457b952d6SSatish Balay rowcount = 0; nzcount = 0; 279557b952d6SSatish Balay for (i=0; i<mbs; i++) { 279657b952d6SSatish Balay dcount = 0; 279757b952d6SSatish Balay odcount = 0; 279857b952d6SSatish Balay for (j=0; j<bs; j++) { 279957b952d6SSatish Balay kmax = locrowlens[rowcount]; 280057b952d6SSatish Balay for (k=0; k<kmax; k++) { 280157b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 280257b952d6SSatish Balay if (!mask[tmp]) { 280357b952d6SSatish Balay mask[tmp] = 1; 280457b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 280557b952d6SSatish Balay else masked1[dcount++] = tmp; 280657b952d6SSatish Balay } 280757b952d6SSatish Balay } 280857b952d6SSatish Balay rowcount++; 280957b952d6SSatish Balay } 2810cee3aa6bSSatish Balay 281157b952d6SSatish Balay dlens[i] = dcount; 281257b952d6SSatish Balay odlens[i] = odcount; 2813cee3aa6bSSatish Balay 281457b952d6SSatish Balay /* zero out the mask elements we set */ 281557b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 281657b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 281757b952d6SSatish Balay } 2818cee3aa6bSSatish Balay 281957b952d6SSatish Balay /* create our matrix */ 282078ae41b4SKris Buschelman ierr = MatCreate(comm,m,m,M+extra_rows,N+extra_rows,&A);CHKERRQ(ierr); 282178ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 282278ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 282378ae41b4SKris Buschelman 282478ae41b4SKris Buschelman /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */ 2825dc231df0SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 282657b952d6SSatish Balay 282757b952d6SSatish Balay if (!rank) { 282887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 282957b952d6SSatish Balay /* read in my part of the matrix numerical values */ 283057b952d6SSatish Balay nz = procsnz[0]; 283157b952d6SSatish Balay vals = buf; 2832cee3aa6bSSatish Balay mycols = ibuf; 2833cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2834e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2835cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2836537820f0SBarry Smith 283757b952d6SSatish Balay /* insert into matrix */ 283857b952d6SSatish Balay jj = rstart*bs; 283957b952d6SSatish Balay for (i=0; i<m; i++) { 2840dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 284157b952d6SSatish Balay mycols += locrowlens[i]; 284257b952d6SSatish Balay vals += locrowlens[i]; 284357b952d6SSatish Balay jj++; 284457b952d6SSatish Balay } 284557b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 284657b952d6SSatish Balay for (i=1; i<size-1; i++) { 284757b952d6SSatish Balay nz = procsnz[i]; 284857b952d6SSatish Balay vals = buf; 2849e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2850ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 285157b952d6SSatish Balay } 285257b952d6SSatish Balay /* the last proc */ 285357b952d6SSatish Balay if (size != 1){ 285457b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2855cee3aa6bSSatish Balay vals = buf; 2856e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 285757b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2858ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 285957b952d6SSatish Balay } 2860606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2861d64ed03dSBarry Smith } else { 286257b952d6SSatish Balay /* receive numeric values */ 286387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 286457b952d6SSatish Balay 286557b952d6SSatish Balay /* receive message of values*/ 286657b952d6SSatish Balay vals = buf; 2867cee3aa6bSSatish Balay mycols = ibuf; 2868ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2869ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 287029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 287157b952d6SSatish Balay 287257b952d6SSatish Balay /* insert into matrix */ 287357b952d6SSatish Balay jj = rstart*bs; 2874cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2875dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 287657b952d6SSatish Balay mycols += locrowlens[i]; 287757b952d6SSatish Balay vals += locrowlens[i]; 287857b952d6SSatish Balay jj++; 287957b952d6SSatish Balay } 288057b952d6SSatish Balay } 2881606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2882606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2883606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2884dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 2885dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 2886dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 28876d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28886d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 288978ae41b4SKris Buschelman 289078ae41b4SKris Buschelman *newmat = A; 28913a40ed3dSBarry Smith PetscFunctionReturn(0); 289257b952d6SSatish Balay } 289357b952d6SSatish Balay 28944a2ae208SSatish Balay #undef __FUNCT__ 28954a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2896133cdb44SSatish Balay /*@ 2897133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2898133cdb44SSatish Balay 2899133cdb44SSatish Balay Input Parameters: 2900133cdb44SSatish Balay . mat - the matrix 2901133cdb44SSatish Balay . fact - factor 2902133cdb44SSatish Balay 2903fee21e36SBarry Smith Collective on Mat 2904fee21e36SBarry Smith 29058c890885SBarry Smith Level: advanced 29068c890885SBarry Smith 2907133cdb44SSatish Balay Notes: 2908133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2909133cdb44SSatish Balay 2910133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2911133cdb44SSatish Balay 2912133cdb44SSatish Balay .seealso: MatSetOption() 2913133cdb44SSatish Balay @*/ 2914dfbe8321SBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2915133cdb44SSatish Balay { 2916dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 29175bf65638SKris Buschelman 29185bf65638SKris Buschelman PetscFunctionBegin; 29195bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 29205bf65638SKris Buschelman if (f) { 29215bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 29225bf65638SKris Buschelman } 29235bf65638SKris Buschelman PetscFunctionReturn(0); 29245bf65638SKris Buschelman } 29255bf65638SKris Buschelman 29265bf65638SKris Buschelman #undef __FUNCT__ 29275bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 2928dfbe8321SBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 29295bf65638SKris Buschelman { 293025fdafccSSatish Balay Mat_MPIBAIJ *baij; 2931133cdb44SSatish Balay 2932133cdb44SSatish Balay PetscFunctionBegin; 2933133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2934133cdb44SSatish Balay baij->ht_fact = fact; 2935133cdb44SSatish Balay PetscFunctionReturn(0); 2936133cdb44SSatish Balay } 2937f2a5309cSSatish Balay 29384a2ae208SSatish Balay #undef __FUNCT__ 29394a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2940b24ad042SBarry Smith PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 2941f2a5309cSSatish Balay { 2942f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2943f2a5309cSSatish Balay PetscFunctionBegin; 2944f2a5309cSSatish Balay *Ad = a->A; 2945f2a5309cSSatish Balay *Ao = a->B; 2946195d93cdSBarry Smith *colmap = a->garray; 2947f2a5309cSSatish Balay PetscFunctionReturn(0); 2948f2a5309cSSatish Balay } 2949