1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 127843d17aSBarry Smith { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 14dfbe8321SBarry Smith PetscErrorCode ierr; 15985db425SBarry Smith PetscInt i,*idxb = 0; 1687828ca2SBarry Smith PetscScalar *va,*vb; 177843d17aSBarry Smith Vec vtmp; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 20985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 211ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 22985db425SBarry Smith if (idx) { 2326fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 2426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2526fbe8dcSKarl Rupp } 26985db425SBarry Smith } 277843d17aSBarry Smith 28d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 29785e854fSJed Brown if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);} 30985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 311ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 327843d17aSBarry Smith 33d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 3426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 3526fbe8dcSKarl Rupp va[i] = vb[i]; 3626fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 3726fbe8dcSKarl Rupp } 387843d17aSBarry Smith } 397843d17aSBarry Smith 401ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 411ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 42c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 447843d17aSBarry Smith PetscFunctionReturn(0); 457843d17aSBarry Smith } 467843d17aSBarry Smith 477087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 487fc3c18eSBarry Smith { 497fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 517fc3c18eSBarry Smith 527fc3c18eSBarry Smith PetscFunctionBegin; 537fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 547fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 557fc3c18eSBarry Smith PetscFunctionReturn(0); 567fc3c18eSBarry Smith } 577fc3c18eSBarry Smith 587087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 597fc3c18eSBarry Smith { 607fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 61dfbe8321SBarry Smith PetscErrorCode ierr; 627fc3c18eSBarry Smith 637fc3c18eSBarry Smith PetscFunctionBegin; 647fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 657fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 667fc3c18eSBarry Smith PetscFunctionReturn(0); 677fc3c18eSBarry Smith } 687fc3c18eSBarry Smith 69537820f0SBarry Smith /* 70537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 72e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7357b952d6SSatish Balay length of colmap equals the global matrix length. 7457b952d6SSatish Balay */ 75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 7657b952d6SSatish Balay { 7757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 7857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8157b952d6SSatish Balay 82d64ed03dSBarry Smith PetscFunctionBegin; 83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 84e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 8548e59246SSatish Balay for (i=0; i<nbs; i++) { 863861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 8748e59246SSatish Balay } 8848e59246SSatish Balay #else 89580bdb30SBarry Smith ierr = PetscCalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 903bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 91928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9248e59246SSatish Balay #endif 933a40ed3dSBarry Smith PetscFunctionReturn(0); 9457b952d6SSatish Balay } 9557b952d6SSatish Balay 96d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 9780c1aa95SSatish Balay { \ 9880c1aa95SSatish Balay brow = row/bs; \ 9980c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 100ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10180c1aa95SSatish Balay bcol = col/bs; \ 10280c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 103ab26458aSBarry Smith low = 0; high = nrow; \ 104ab26458aSBarry Smith while (high-low > 3) { \ 105ab26458aSBarry Smith t = (low+high)/2; \ 106ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 107ab26458aSBarry Smith else low = t; \ 108ab26458aSBarry Smith } \ 109ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11080c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11180c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11280c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 113eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 114eada6651SSatish Balay else *bap = value; \ 115ac7a638eSSatish Balay goto a_noinsert; \ 11680c1aa95SSatish Balay } \ 11780c1aa95SSatish Balay } \ 11889280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 119d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 120fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12180c1aa95SSatish Balay N = nrow++ - 1; \ 12280c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 123580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\ 124580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 125580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 12680c1aa95SSatish Balay rp[_i] = bcol; \ 12780c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 128ac7a638eSSatish Balay a_noinsert:; \ 12980c1aa95SSatish Balay ailen[brow] = nrow; \ 13080c1aa95SSatish Balay } 13157b952d6SSatish Balay 132d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 133ac7a638eSSatish Balay { \ 134ac7a638eSSatish Balay brow = row/bs; \ 135ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 136ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 137ac7a638eSSatish Balay bcol = col/bs; \ 138ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 139ac7a638eSSatish Balay low = 0; high = nrow; \ 140ac7a638eSSatish Balay while (high-low > 3) { \ 141ac7a638eSSatish Balay t = (low+high)/2; \ 142ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 143ac7a638eSSatish Balay else low = t; \ 144ac7a638eSSatish Balay } \ 145ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 146ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 147ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 148ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 149ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 150ac7a638eSSatish Balay else *bap = value; \ 151ac7a638eSSatish Balay goto b_noinsert; \ 152ac7a638eSSatish Balay } \ 153ac7a638eSSatish Balay } \ 15489280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 155d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 156fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 157ac7a638eSSatish Balay N = nrow++ - 1; \ 158ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 159580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\ 160580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr);\ 161580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 162ac7a638eSSatish Balay rp[_i] = bcol; \ 163ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 164ac7a638eSSatish Balay b_noinsert:; \ 165ac7a638eSSatish Balay bilen[brow] = nrow; \ 166ac7a638eSSatish Balay } 167ac7a638eSSatish Balay 168b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 16957b952d6SSatish Balay { 17057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 17193fea6afSBarry Smith MatScalar value; 172ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 173dfbe8321SBarry Smith PetscErrorCode ierr; 174b24ad042SBarry Smith PetscInt i,j,row,col; 175d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 176d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 177d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 17857b952d6SSatish Balay 179eada6651SSatish Balay /* Some Variables required in the macro */ 18080c1aa95SSatish Balay Mat A = baij->A; 18180c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 182b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1833eda8832SBarry Smith MatScalar *aa =a->a; 184ac7a638eSSatish Balay 185ac7a638eSSatish Balay Mat B = baij->B; 186ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 187b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 1883eda8832SBarry Smith MatScalar *ba =b->a; 189ac7a638eSSatish Balay 190b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 191b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 1923eda8832SBarry Smith MatScalar *ap,*bap; 19380c1aa95SSatish Balay 194d64ed03dSBarry Smith PetscFunctionBegin; 19557b952d6SSatish Balay for (i=0; i<m; i++) { 1965ef9f2a5SBarry Smith if (im[i] < 0) continue; 197*cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 19857b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 19957b952d6SSatish Balay row = im[i] - rstart_orig; 20057b952d6SSatish Balay for (j=0; j<n; j++) { 20157b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 20257b952d6SSatish Balay col = in[j] - cstart_orig; 203db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 204db4deed7SKarl Rupp else value = v[i+j*m]; 205d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 20673959e64SBarry Smith } else if (in[j] < 0) continue; 207*cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 20876bd3646SJed Brown SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 20976bd3646SJed Brown } else { 21057b952d6SSatish Balay if (mat->was_assembled) { 211905e6a2fSBarry Smith if (!baij->colmap) { 212ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 213905e6a2fSBarry Smith } 214aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2150f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 216bba1ac68SSatish Balay col = col - 1; 21748e59246SSatish Balay #else 218bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 21948e59246SSatish Balay #endif 220c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 221ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2228295de27SSatish Balay col = in[j]; 2239bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2249bf004c3SSatish Balay B = baij->B; 2259bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2269bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2279bf004c3SSatish Balay ba =b->a; 228c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 229c9ef50b2SBarry Smith else col += in[j]%bs; 2308295de27SSatish Balay } else col = in[j]; 231db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 232db4deed7SKarl Rupp else value = v[i+j*m]; 233d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 23490da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23557b952d6SSatish Balay } 23657b952d6SSatish Balay } 237d64ed03dSBarry Smith } else { 2384cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 23990f02eecSBarry Smith if (!baij->donotstash) { 2405080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 241ff2fd236SBarry Smith if (roworiented) { 242b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 243ff2fd236SBarry Smith } else { 244b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 24557b952d6SSatish Balay } 24657b952d6SSatish Balay } 24757b952d6SSatish Balay } 24890f02eecSBarry Smith } 2493a40ed3dSBarry Smith PetscFunctionReturn(0); 25057b952d6SSatish Balay } 25157b952d6SSatish Balay 2528ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 253880c6e6aSBarry Smith { 254880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2558ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 256880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 257880c6e6aSBarry Smith PetscErrorCode ierr; 2588ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 259880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 260880c6e6aSBarry Smith const PetscScalar *value = v; 261880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 262880c6e6aSBarry Smith 263880c6e6aSBarry Smith PetscFunctionBegin; 264880c6e6aSBarry Smith rp = aj + ai[row]; 265880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 266880c6e6aSBarry Smith rmax = imax[row]; 267880c6e6aSBarry Smith nrow = ailen[row]; 2688ab52850SBarry Smith value = v; 2698ab52850SBarry Smith low = 0; 2708ab52850SBarry Smith high = nrow; 271880c6e6aSBarry Smith while (high-low > 7) { 272880c6e6aSBarry Smith t = (low+high)/2; 273880c6e6aSBarry Smith if (rp[t] > col) high = t; 274880c6e6aSBarry Smith else low = t; 275880c6e6aSBarry Smith } 276880c6e6aSBarry Smith for (i=low; i<high; i++) { 277880c6e6aSBarry Smith if (rp[i] > col) break; 278880c6e6aSBarry Smith if (rp[i] == col) { 279880c6e6aSBarry Smith bap = ap + bs2*i; 280880c6e6aSBarry Smith if (roworiented) { 281880c6e6aSBarry Smith if (is == ADD_VALUES) { 2828ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 283880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 284880c6e6aSBarry Smith bap[jj] += *value++; 285880c6e6aSBarry Smith } 286880c6e6aSBarry Smith } 287880c6e6aSBarry Smith } else { 2888ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 289880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 290880c6e6aSBarry Smith bap[jj] = *value++; 291880c6e6aSBarry Smith } 292880c6e6aSBarry Smith } 293880c6e6aSBarry Smith } 294880c6e6aSBarry Smith } else { 295880c6e6aSBarry Smith if (is == ADD_VALUES) { 2968ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 297880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 298880c6e6aSBarry Smith bap[jj] += value[jj]; 299880c6e6aSBarry Smith } 300880c6e6aSBarry Smith bap += bs; 301880c6e6aSBarry Smith } 302880c6e6aSBarry Smith } else { 3038ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 304880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 305880c6e6aSBarry Smith bap[jj] = value[jj]; 306880c6e6aSBarry Smith } 307880c6e6aSBarry Smith bap += bs; 308880c6e6aSBarry Smith } 309880c6e6aSBarry Smith } 310880c6e6aSBarry Smith } 311880c6e6aSBarry Smith goto noinsert2; 312880c6e6aSBarry Smith } 313880c6e6aSBarry Smith } 314880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 315880c6e6aSBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 316880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 317880c6e6aSBarry Smith N = nrow++ - 1; high++; 318880c6e6aSBarry Smith /* shift up all the later entries in this row */ 319580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 320580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 321880c6e6aSBarry Smith rp[i] = col; 322880c6e6aSBarry Smith bap = ap + bs2*i; 323880c6e6aSBarry Smith if (roworiented) { 3248ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 325880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 326880c6e6aSBarry Smith bap[jj] = *value++; 327880c6e6aSBarry Smith } 328880c6e6aSBarry Smith } 329880c6e6aSBarry Smith } else { 3308ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 331880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 332880c6e6aSBarry Smith *bap++ = *value++; 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith } 335880c6e6aSBarry Smith } 336880c6e6aSBarry Smith noinsert2:; 337880c6e6aSBarry Smith ailen[row] = nrow; 338880c6e6aSBarry Smith PetscFunctionReturn(0); 339880c6e6aSBarry Smith } 340880c6e6aSBarry Smith 3418ab52850SBarry Smith /* 3428ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3438ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3448ab52850SBarry Smith */ 34597e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 346ab26458aSBarry Smith { 347ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 348dd6ea824SBarry Smith const PetscScalar *value; 349f15d580aSBarry Smith MatScalar *barray = baij->barray; 350ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 351dfbe8321SBarry Smith PetscErrorCode ierr; 352899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 353899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 354d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 355ab26458aSBarry Smith 356b16ae2b1SBarry Smith PetscFunctionBegin; 35730793edcSSatish Balay if (!barray) { 358785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 35982502324SSatish Balay baij->barray = barray; 36030793edcSSatish Balay } 36130793edcSSatish Balay 36226fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 36326fbe8dcSKarl Rupp else stepval = (m-1)*bs; 36426fbe8dcSKarl Rupp 365ab26458aSBarry Smith for (i=0; i<m; i++) { 3665ef9f2a5SBarry Smith if (im[i] < 0) continue; 367*cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 368ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 369ab26458aSBarry Smith row = im[i] - rstart; 370ab26458aSBarry Smith for (j=0; j<n; j++) { 37115b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 37215b57d14SSatish Balay if ((roworiented) && (n == 1)) { 373f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 37415b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 375f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 37615b57d14SSatish Balay } else { /* Here a copy is required */ 377ab26458aSBarry Smith if (roworiented) { 37853ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 379ab26458aSBarry Smith } else { 38053ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 381abef11f7SSatish Balay } 38253ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 38326fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 38453ef36baSBarry Smith barray += bs; 38547513183SBarry Smith } 38630793edcSSatish Balay barray -= bs2; 38715b57d14SSatish Balay } 388abef11f7SSatish Balay 389abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 390abef11f7SSatish Balay col = in[j] - cstart; 3918ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 39226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 393*cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) { 39476bd3646SJed Brown SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 39576bd3646SJed Brown } else { 396ab26458aSBarry Smith if (mat->was_assembled) { 397ab26458aSBarry Smith if (!baij->colmap) { 398ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 399ab26458aSBarry Smith } 400a5eb4965SSatish Balay 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 402aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 403b24ad042SBarry Smith { PetscInt data; 4040f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 405e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 406fa46199cSSatish Balay } 40748e59246SSatish Balay #else 408e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 409a5eb4965SSatish Balay #endif 41048e59246SSatish Balay #endif 411aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4120f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 413fa46199cSSatish Balay col = (col - 1)/bs; 41448e59246SSatish Balay #else 415a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 41648e59246SSatish Balay #endif 4170e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 418ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 419ab26458aSBarry Smith col = in[j]; 420bb003d0fSBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]); 421db4deed7SKarl Rupp } else col = in[j]; 4228ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 423ab26458aSBarry Smith } 424ab26458aSBarry Smith } 425d64ed03dSBarry Smith } else { 426bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 427ab26458aSBarry Smith if (!baij->donotstash) { 428ff2fd236SBarry Smith if (roworiented) { 4296fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 430ff2fd236SBarry Smith } else { 4316fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 432ff2fd236SBarry Smith } 433abef11f7SSatish Balay } 434ab26458aSBarry Smith } 435ab26458aSBarry Smith } 4363a40ed3dSBarry Smith PetscFunctionReturn(0); 437ab26458aSBarry Smith } 4386fa18ffdSBarry Smith 4390bdbc534SSatish Balay #define HASH_KEY 0.6180339887 440b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 441b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 442b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 44397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4440bdbc534SSatish Balay { 4450bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 446ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 447dfbe8321SBarry Smith PetscErrorCode ierr; 448b24ad042SBarry Smith PetscInt i,j,row,col; 449d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 450d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 451d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 452329f5518SBarry Smith PetscReal tmp; 4533eda8832SBarry Smith MatScalar **HD = baij->hd,value; 454b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4550bdbc534SSatish Balay 4560bdbc534SSatish Balay PetscFunctionBegin; 4570bdbc534SSatish Balay for (i=0; i<m; i++) { 45876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 459e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 460e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 46176bd3646SJed Brown } 4620bdbc534SSatish Balay row = im[i]; 463c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4640bdbc534SSatish Balay for (j=0; j<n; j++) { 4650bdbc534SSatish Balay col = in[j]; 466db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 467db4deed7SKarl Rupp else value = v[i+j*m]; 468b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 469c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 470c2760754SSatish Balay h1 = HASH(size,key,tmp); 4710bdbc534SSatish Balay 472c2760754SSatish Balay 473c2760754SSatish Balay idx = h1; 47476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 475187ce0cbSSatish Balay insert_ct++; 476187ce0cbSSatish Balay total_ct++; 477187ce0cbSSatish Balay if (HT[idx] != key) { 478187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 479187ce0cbSSatish Balay if (idx == size) { 480187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 481f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 482187ce0cbSSatish Balay } 483187ce0cbSSatish Balay } 48476bd3646SJed Brown } else if (HT[idx] != key) { 485c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 486c2760754SSatish Balay if (idx == size) { 487c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 488f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 489c2760754SSatish Balay } 490c2760754SSatish Balay } 491c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 492c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 493c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4940bdbc534SSatish Balay } 49526fbe8dcSKarl Rupp } else if (!baij->donotstash) { 496ff2fd236SBarry Smith if (roworiented) { 497b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 498ff2fd236SBarry Smith } else { 499b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 5000bdbc534SSatish Balay } 5010bdbc534SSatish Balay } 5020bdbc534SSatish Balay } 50376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 504abf3b562SBarry Smith baij->ht_total_ct += total_ct; 505abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 50676bd3646SJed Brown } 5070bdbc534SSatish Balay PetscFunctionReturn(0); 5080bdbc534SSatish Balay } 5090bdbc534SSatish Balay 51097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5110bdbc534SSatish Balay { 5120bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 513ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 514dfbe8321SBarry Smith PetscErrorCode ierr; 515b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 516899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 517d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 518b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 519329f5518SBarry Smith PetscReal tmp; 5203eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 521dd6ea824SBarry Smith const PetscScalar *v_t,*value; 522b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5230bdbc534SSatish Balay 524d0a41580SSatish Balay PetscFunctionBegin; 52526fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 52626fbe8dcSKarl Rupp else stepval = (m-1)*bs; 52726fbe8dcSKarl Rupp 5280bdbc534SSatish Balay for (i=0; i<m; i++) { 52976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 530e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 531e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 53276bd3646SJed Brown } 5330bdbc534SSatish Balay row = im[i]; 534ab715e2cSSatish Balay v_t = v + i*nbs2; 535c2760754SSatish Balay if (row >= rstart && row < rend) { 5360bdbc534SSatish Balay for (j=0; j<n; j++) { 5370bdbc534SSatish Balay col = in[j]; 5380bdbc534SSatish Balay 5390bdbc534SSatish Balay /* Look up into the Hash Table */ 540c2760754SSatish Balay key = row*Nbs+col+1; 541c2760754SSatish Balay h1 = HASH(size,key,tmp); 5420bdbc534SSatish Balay 543c2760754SSatish Balay idx = h1; 54476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 545187ce0cbSSatish Balay total_ct++; 546187ce0cbSSatish Balay insert_ct++; 547187ce0cbSSatish Balay if (HT[idx] != key) { 548187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 549187ce0cbSSatish Balay if (idx == size) { 550187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 551f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 552187ce0cbSSatish Balay } 553187ce0cbSSatish Balay } 55476bd3646SJed Brown } else if (HT[idx] != key) { 555c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 556c2760754SSatish Balay if (idx == size) { 557c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 558f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 559c2760754SSatish Balay } 560c2760754SSatish Balay } 561c2760754SSatish Balay baij_a = HD[idx]; 5620bdbc534SSatish Balay if (roworiented) { 563c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 564187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 565187ce0cbSSatish Balay value = v_t; 566187ce0cbSSatish Balay v_t += bs; 567fef45726SSatish Balay if (addv == ADD_VALUES) { 568c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 569c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 570fef45726SSatish Balay baij_a[jj] += *value++; 571b4cc0f5aSSatish Balay } 572b4cc0f5aSSatish Balay } 573fef45726SSatish Balay } else { 574c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 575c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 576fef45726SSatish Balay baij_a[jj] = *value++; 577fef45726SSatish Balay } 578fef45726SSatish Balay } 579fef45726SSatish Balay } 5800bdbc534SSatish Balay } else { 5810bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 582fef45726SSatish Balay if (addv == ADD_VALUES) { 583b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5840bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 585fef45726SSatish Balay baij_a[jj] += *value++; 586fef45726SSatish Balay } 587fef45726SSatish Balay } 588fef45726SSatish Balay } else { 589fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 590fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 591fef45726SSatish Balay baij_a[jj] = *value++; 592fef45726SSatish Balay } 593b4cc0f5aSSatish Balay } 5940bdbc534SSatish Balay } 5950bdbc534SSatish Balay } 5960bdbc534SSatish Balay } 5970bdbc534SSatish Balay } else { 5980bdbc534SSatish Balay if (!baij->donotstash) { 5990bdbc534SSatish Balay if (roworiented) { 6008798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6010bdbc534SSatish Balay } else { 6028798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6030bdbc534SSatish Balay } 6040bdbc534SSatish Balay } 6050bdbc534SSatish Balay } 6060bdbc534SSatish Balay } 60776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 608abf3b562SBarry Smith baij->ht_total_ct += total_ct; 609abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 61076bd3646SJed Brown } 6110bdbc534SSatish Balay PetscFunctionReturn(0); 6120bdbc534SSatish Balay } 613133cdb44SSatish Balay 614b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 615d6de1c52SSatish Balay { 616d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 6176849ba73SBarry Smith PetscErrorCode ierr; 618d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 619d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 620d6de1c52SSatish Balay 621133cdb44SSatish Balay PetscFunctionBegin; 622d6de1c52SSatish Balay for (i=0; i<m; i++) { 623e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 624e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 625d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 626d6de1c52SSatish Balay row = idxm[i] - bsrstart; 627d6de1c52SSatish Balay for (j=0; j<n; j++) { 628e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 629e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 630d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 631d6de1c52SSatish Balay col = idxn[j] - bscstart; 63298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 633d64ed03dSBarry Smith } else { 634905e6a2fSBarry Smith if (!baij->colmap) { 635ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 636905e6a2fSBarry Smith } 637aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6380f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 639fa46199cSSatish Balay data--; 64048e59246SSatish Balay #else 64148e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 64248e59246SSatish Balay #endif 64348e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 644d9d09a02SSatish Balay else { 64548e59246SSatish Balay col = data + idxn[j]%bs; 64698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647d6de1c52SSatish Balay } 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay } 650f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 651d6de1c52SSatish Balay } 6523a40ed3dSBarry Smith PetscFunctionReturn(0); 653d6de1c52SSatish Balay } 654d6de1c52SSatish Balay 655dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 656d6de1c52SSatish Balay { 657d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 658d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 659dfbe8321SBarry Smith PetscErrorCode ierr; 660d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 661329f5518SBarry Smith PetscReal sum = 0.0; 6623eda8832SBarry Smith MatScalar *v; 663d6de1c52SSatish Balay 664d64ed03dSBarry Smith PetscFunctionBegin; 665d6de1c52SSatish Balay if (baij->size == 1) { 666064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 667d6de1c52SSatish Balay } else { 668d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 669d6de1c52SSatish Balay v = amat->a; 6708a62d963SHong Zhang nz = amat->nz*bs2; 6718a62d963SHong Zhang for (i=0; i<nz; i++) { 672329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 673d6de1c52SSatish Balay } 674d6de1c52SSatish Balay v = bmat->a; 6758a62d963SHong Zhang nz = bmat->nz*bs2; 6768a62d963SHong Zhang for (i=0; i<nz; i++) { 677329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 678d6de1c52SSatish Balay } 679b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6808f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6818a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6828a62d963SHong Zhang PetscReal *tmp,*tmp2; 683899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 6848f8f2f0dSBarry Smith ierr = PetscCalloc1(mat->cmap->N,&tmp);CHKERRQ(ierr); 685857a15f1SBarry Smith ierr = PetscMalloc1(mat->cmap->N,&tmp2);CHKERRQ(ierr); 6868a62d963SHong Zhang v = amat->a; jj = amat->j; 6878a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6888a62d963SHong Zhang for (j=0; j<bs; j++) { 6898a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6908a62d963SHong Zhang for (row=0; row<bs; row++) { 6918a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6928a62d963SHong Zhang } 6938a62d963SHong Zhang } 6948a62d963SHong Zhang jj++; 6958a62d963SHong Zhang } 6968a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6978a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6988a62d963SHong Zhang for (j=0; j<bs; j++) { 6998a62d963SHong Zhang col = bs*garray[*jj] + j; 7008a62d963SHong Zhang for (row=0; row<bs; row++) { 7018a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang jj++; 7058a62d963SHong Zhang } 706b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7078a62d963SHong Zhang *nrm = 0.0; 708d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7098a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7108a62d963SHong Zhang } 711857a15f1SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 712857a15f1SBarry Smith ierr = PetscFree(tmp2);CHKERRQ(ierr); 7138a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 714577dd1f9SKris Buschelman PetscReal *sums; 715785e854fSJed Brown ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr); 7168a62d963SHong Zhang sum = 0.0; 7178a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7188a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7198a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7208a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7218a62d963SHong Zhang for (i=0; i<nz; i++) { 7228a62d963SHong Zhang for (col=0; col<bs; col++) { 7238a62d963SHong Zhang for (row=0; row<bs; row++) { 7248a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7258a62d963SHong Zhang } 7268a62d963SHong Zhang } 7278a62d963SHong Zhang } 7288a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7298a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7308a62d963SHong Zhang for (i=0; i<nz; i++) { 7318a62d963SHong Zhang for (col=0; col<bs; col++) { 7328a62d963SHong Zhang for (row=0; row<bs; row++) { 7338a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7348a62d963SHong Zhang } 7358a62d963SHong Zhang } 7368a62d963SHong Zhang } 7378a62d963SHong Zhang for (row=0; row<bs; row++) { 7388a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7398a62d963SHong Zhang } 7408a62d963SHong Zhang } 741b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 742577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 743ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 744d64ed03dSBarry Smith } 7453a40ed3dSBarry Smith PetscFunctionReturn(0); 746d6de1c52SSatish Balay } 74757b952d6SSatish Balay 748fef45726SSatish Balay /* 749fef45726SSatish Balay Creates the hash table, and sets the table 750fef45726SSatish Balay This table is created only once. 751fef45726SSatish Balay If new entried need to be added to the matrix 752fef45726SSatish Balay then the hash table has to be destroyed and 753fef45726SSatish Balay recreated. 754fef45726SSatish Balay */ 755dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 756596b8d2eSBarry Smith { 757596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 758596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 759596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 760b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7616849ba73SBarry Smith PetscErrorCode ierr; 762fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 763899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 764b24ad042SBarry Smith PetscInt *HT,key; 7653eda8832SBarry Smith MatScalar **HD; 766329f5518SBarry Smith PetscReal tmp; 7676cf91177SBarry Smith #if defined(PETSC_USE_INFO) 768b24ad042SBarry Smith PetscInt ct=0,max=0; 7694a15367fSSatish Balay #endif 770fef45726SSatish Balay 771d64ed03dSBarry Smith PetscFunctionBegin; 772fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 773fef45726SSatish Balay 774fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 775fca92195SBarry Smith ht_size = baij->ht_size; 7760bdbc534SSatish Balay 777fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7781795a4d1SJed Brown ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 779b9e4cc15SSatish Balay HD = baij->hd; 780a07cd24cSSatish Balay HT = baij->ht; 781b9e4cc15SSatish Balay 782596b8d2eSBarry Smith /* Loop Over A */ 7830bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 784596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7850bdbc534SSatish Balay row = i+rstart; 7860bdbc534SSatish Balay col = aj[j]+cstart; 787596b8d2eSBarry Smith 788187ce0cbSSatish Balay key = row*Nbs + col + 1; 789fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 790fca92195SBarry Smith for (k=0; k<ht_size; k++) { 791fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 792fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 793fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 794596b8d2eSBarry Smith break; 7956cf91177SBarry Smith #if defined(PETSC_USE_INFO) 796187ce0cbSSatish Balay } else { 797187ce0cbSSatish Balay ct++; 798187ce0cbSSatish Balay #endif 799596b8d2eSBarry Smith } 800187ce0cbSSatish Balay } 8016cf91177SBarry Smith #if defined(PETSC_USE_INFO) 802187ce0cbSSatish Balay if (k> max) max = k; 803187ce0cbSSatish Balay #endif 804596b8d2eSBarry Smith } 805596b8d2eSBarry Smith } 806596b8d2eSBarry Smith /* Loop Over B */ 8070bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 808596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8090bdbc534SSatish Balay row = i+rstart; 8100bdbc534SSatish Balay col = garray[bj[j]]; 811187ce0cbSSatish Balay key = row*Nbs + col + 1; 812fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 813fca92195SBarry Smith for (k=0; k<ht_size; k++) { 814fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 815fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 816fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 817596b8d2eSBarry Smith break; 8186cf91177SBarry Smith #if defined(PETSC_USE_INFO) 819187ce0cbSSatish Balay } else { 820187ce0cbSSatish Balay ct++; 821187ce0cbSSatish Balay #endif 822596b8d2eSBarry Smith } 823187ce0cbSSatish Balay } 8246cf91177SBarry Smith #if defined(PETSC_USE_INFO) 825187ce0cbSSatish Balay if (k> max) max = k; 826187ce0cbSSatish Balay #endif 827596b8d2eSBarry Smith } 828596b8d2eSBarry Smith } 829596b8d2eSBarry Smith 830596b8d2eSBarry Smith /* Print Summary */ 8316cf91177SBarry Smith #if defined(PETSC_USE_INFO) 832fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 83326fbe8dcSKarl Rupp if (HT[i]) j++; 834c38d4ed2SBarry Smith } 8351e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 836187ce0cbSSatish Balay #endif 8373a40ed3dSBarry Smith PetscFunctionReturn(0); 838596b8d2eSBarry Smith } 83957b952d6SSatish Balay 840dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 841bbb85fb3SSatish Balay { 842bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 843dfbe8321SBarry Smith PetscErrorCode ierr; 844b24ad042SBarry Smith PetscInt nstash,reallocs; 845bbb85fb3SSatish Balay 846bbb85fb3SSatish Balay PetscFunctionBegin; 84726fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 848bbb85fb3SSatish Balay 849d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8541e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 855bbb85fb3SSatish Balay PetscFunctionReturn(0); 856bbb85fb3SSatish Balay } 857bbb85fb3SSatish Balay 858dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 859bbb85fb3SSatish Balay { 860bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86191c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 8626849ba73SBarry Smith PetscErrorCode ierr; 863b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 864e44c0bd4SBarry Smith PetscInt *row,*col; 865ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8663eda8832SBarry Smith MatScalar *val; 867b24ad042SBarry Smith PetscMPIInt n; 868bbb85fb3SSatish Balay 869bbb85fb3SSatish Balay PetscFunctionBegin; 8705fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8714cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 872a2d1c673SSatish Balay while (1) { 8738798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 874a2d1c673SSatish Balay if (!flg) break; 875a2d1c673SSatish Balay 876bbb85fb3SSatish Balay for (i=0; i<n;) { 877bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 87926fbe8dcSKarl Rupp if (row[j] != rstart) break; 88026fbe8dcSKarl Rupp } 881bbb85fb3SSatish Balay if (j < n) ncols = j-i; 882bbb85fb3SSatish Balay else ncols = n-i; 883bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8844b4eb8d3SJed Brown ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 885bbb85fb3SSatish Balay i = j; 886bbb85fb3SSatish Balay } 887bbb85fb3SSatish Balay } 8888798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 889a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 890a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 891a2d1c673SSatish Balay restore the original flags */ 892a2d1c673SSatish Balay r1 = baij->roworiented; 893a2d1c673SSatish Balay r2 = a->roworiented; 89491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 89526fbe8dcSKarl Rupp 8967c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8977c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89826fbe8dcSKarl Rupp 89991c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 900a2d1c673SSatish Balay while (1) { 9018798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 902a2d1c673SSatish Balay if (!flg) break; 903a2d1c673SSatish Balay 904a2d1c673SSatish Balay for (i=0; i<n;) { 905a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 90626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 90726fbe8dcSKarl Rupp if (row[j] != rstart) break; 90826fbe8dcSKarl Rupp } 909a2d1c673SSatish Balay if (j < n) ncols = j-i; 910a2d1c673SSatish Balay else ncols = n-i; 9114b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 912a2d1c673SSatish Balay i = j; 913a2d1c673SSatish Balay } 914a2d1c673SSatish Balay } 9158798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 91626fbe8dcSKarl Rupp 917a2d1c673SSatish Balay baij->roworiented = r1; 918a2d1c673SSatish Balay a->roworiented = r2; 91926fbe8dcSKarl Rupp 92091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 921bbb85fb3SSatish Balay } 922bbb85fb3SSatish Balay 923bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 924bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 925bbb85fb3SSatish Balay 926bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 927bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 928bbb85fb3SSatish Balay /* 929bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 930bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 931bbb85fb3SSatish Balay */ 932bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 933b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 934bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 935ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 936bbb85fb3SSatish Balay } 937bbb85fb3SSatish Balay } 938bbb85fb3SSatish Balay 939bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 940bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 941bbb85fb3SSatish Balay } 942bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 943bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 944bbb85fb3SSatish Balay 9456cf91177SBarry Smith #if defined(PETSC_USE_INFO) 946bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 947abf3b562SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 94826fbe8dcSKarl Rupp 949bbb85fb3SSatish Balay baij->ht_total_ct = 0; 950bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 951bbb85fb3SSatish Balay } 952bbb85fb3SSatish Balay #endif 953bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 954bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 95526fbe8dcSKarl Rupp 956bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 957bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 958bbb85fb3SSatish Balay } 959bbb85fb3SSatish Balay 960fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 96126fbe8dcSKarl Rupp 962606d414cSSatish Balay baij->rowvalues = 0; 9634f9cfa9eSBarry Smith 9644f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9654f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 966e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 967b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 968e56f5c9eSBarry Smith } 969bbb85fb3SSatish Balay PetscFunctionReturn(0); 970bbb85fb3SSatish Balay } 97157b952d6SSatish Balay 9727da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9739804daf3SBarry Smith #include <petscdraw.h> 9746849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 97557b952d6SSatish Balay { 97657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 977dfbe8321SBarry Smith PetscErrorCode ierr; 9787da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 979d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 980ace3abfcSBarry Smith PetscBool iascii,isdraw; 981b0a32e0cSBarry Smith PetscViewer sviewer; 982f3ef73ceSBarry Smith PetscViewerFormat format; 98357b952d6SSatish Balay 984d64ed03dSBarry Smith PetscFunctionBegin; 985251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 986251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 98732077d6dSBarry Smith if (iascii) { 988b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 989456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9904e220ebcSLois Curfman McInnes MatInfo info; 991ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 992d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9931575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 994b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n", 995b1e9c6f1SBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 996d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 997e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 998d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 999e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 1000b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 10011575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 100207d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 100357b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 10043a40ed3dSBarry Smith PetscFunctionReturn(0); 1005fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 100677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 10073a40ed3dSBarry Smith PetscFunctionReturn(0); 100804929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 100904929863SHong Zhang PetscFunctionReturn(0); 101057b952d6SSatish Balay } 101157b952d6SSatish Balay } 101257b952d6SSatish Balay 10130f5bd95cSBarry Smith if (isdraw) { 1014b0a32e0cSBarry Smith PetscDraw draw; 1015ace3abfcSBarry Smith PetscBool isnull; 1016b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 101745f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 101845f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 101957b952d6SSatish Balay } 102057b952d6SSatish Balay 10217da1fb6eSBarry Smith { 102257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 102357b952d6SSatish Balay Mat A; 102457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1025d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10263eda8832SBarry Smith MatScalar *a; 10273e219373SBarry Smith const char *matname; 102857b952d6SSatish Balay 1029f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1030f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 1031ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 103257b952d6SSatish Balay if (!rank) { 1033f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1034d64ed03dSBarry Smith } else { 1035f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 103657b952d6SSatish Balay } 1037f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 10380298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 10392b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 10403bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 104157b952d6SSatish Balay 104257b952d6SSatish Balay /* copy over the A part */ 104357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 104457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1045785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 104657b952d6SSatish Balay 104757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1048899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104926fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 105057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1051899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++) { 105397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 105857b952d6SSatish Balay /* copy over the B part */ 105957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 106057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 106157b952d6SSatish Balay for (i=0; i<mbs; i++) { 1062899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 106326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 106457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 106557b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 106657b952d6SSatish Balay for (k=0; k<bs; k++) { 106797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1068cee3aa6bSSatish Balay col++; a += bs; 106957b952d6SSatish Balay } 107057b952d6SSatish Balay } 107157b952d6SSatish Balay } 1072606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10736d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10746d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 107555843e3eSBarry Smith /* 107655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1077b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 107855843e3eSBarry Smith */ 10793f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 1080ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 10813e219373SBarry Smith if (!rank) { 1082ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 10837da1fb6eSBarry Smith ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 108457b952d6SSatish Balay } 10853f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 10861575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 10876bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 108857b952d6SSatish Balay } 10893a40ed3dSBarry Smith PetscFunctionReturn(0); 109057b952d6SSatish Balay } 109157b952d6SSatish Balay 1092618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1093b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1094660746e0SBarry Smith { 1095b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 1096b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)aij->A->data; 1097b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)aij->B->data; 1098b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1099b51a4376SLisandro Dalcin PetscInt header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l; 1100b51a4376SLisandro Dalcin PetscInt *rowlens,*colidxs; 1101b51a4376SLisandro Dalcin PetscScalar *matvals; 1102660746e0SBarry Smith PetscErrorCode ierr; 1103660746e0SBarry Smith 1104660746e0SBarry Smith PetscFunctionBegin; 1105b51a4376SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1106b51a4376SLisandro Dalcin 1107b51a4376SLisandro Dalcin M = mat->rmap->N; 1108b51a4376SLisandro Dalcin N = mat->cmap->N; 1109b51a4376SLisandro Dalcin m = mat->rmap->n; 1110b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1111b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1112b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1113b51a4376SLisandro Dalcin nz = bs*bs*(A->nz + B->nz); 1114b51a4376SLisandro Dalcin 1115b51a4376SLisandro Dalcin /* write matrix header */ 1116660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1117b51a4376SLisandro Dalcin header[1] = M; header[2] = N; header[3] = nz; 1118ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1119b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr); 1120660746e0SBarry Smith 1121b51a4376SLisandro Dalcin /* fill in and store row lengths */ 1122b51a4376SLisandro Dalcin ierr = PetscMalloc1(m,&rowlens);CHKERRQ(ierr); 1123b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1124b51a4376SLisandro Dalcin for (j=0; j<bs; j++) 1125b51a4376SLisandro Dalcin rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]); 1126b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT);CHKERRQ(ierr); 1127b51a4376SLisandro Dalcin ierr = PetscFree(rowlens);CHKERRQ(ierr); 1128660746e0SBarry Smith 1129b51a4376SLisandro Dalcin /* fill in and store column indices */ 1130b51a4376SLisandro Dalcin ierr = PetscMalloc1(nz,&colidxs);CHKERRQ(ierr); 1131b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1132b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1133b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1134b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1135b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1136b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1137660746e0SBarry Smith } 1138b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1139b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1140b51a4376SLisandro Dalcin colidxs[cnt++] = bs*A->j[ja] + l + cs; 1141b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1142b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1143b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1144660746e0SBarry Smith } 1145660746e0SBarry Smith } 1146660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1147b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT);CHKERRQ(ierr); 1148b51a4376SLisandro Dalcin ierr = PetscFree(colidxs);CHKERRQ(ierr); 1149660746e0SBarry Smith 1150b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 1151b51a4376SLisandro Dalcin ierr = PetscMalloc1(nz,&matvals);CHKERRQ(ierr); 1152b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1153b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1154b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1155b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1156b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1157b51a4376SLisandro Dalcin matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1158660746e0SBarry Smith } 1159b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1160b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1161b51a4376SLisandro Dalcin matvals[cnt++] = A->a[bs*(bs*ja + l) + k]; 1162b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1163b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1164d21b9a37SPierre Jolivet matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1165660746e0SBarry Smith } 1166b51a4376SLisandro Dalcin } 1167b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR);CHKERRQ(ierr); 1168b51a4376SLisandro Dalcin ierr = PetscFree(matvals);CHKERRQ(ierr); 1169660746e0SBarry Smith 1170b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 1171b51a4376SLisandro Dalcin ierr = MatView_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr); 1172660746e0SBarry Smith PetscFunctionReturn(0); 1173660746e0SBarry Smith } 1174660746e0SBarry Smith 1175dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 117657b952d6SSatish Balay { 1177dfbe8321SBarry Smith PetscErrorCode ierr; 1178ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 117957b952d6SSatish Balay 1180d64ed03dSBarry Smith PetscFunctionBegin; 1181251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1182251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1183251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1184251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1185660746e0SBarry Smith if (iascii || isdraw || issocket) { 11867b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1187660746e0SBarry Smith } else if (isbinary) { 1188660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 118957b952d6SSatish Balay } 11903a40ed3dSBarry Smith PetscFunctionReturn(0); 119157b952d6SSatish Balay } 119257b952d6SSatish Balay 1193dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 119479bdfe76SSatish Balay { 119579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1196dfbe8321SBarry Smith PetscErrorCode ierr; 119779bdfe76SSatish Balay 1198d64ed03dSBarry Smith PetscFunctionBegin; 1199aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1200d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 120179bdfe76SSatish Balay #endif 12028798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12038798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12046bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12056bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1206aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 12076bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 120848e59246SSatish Balay #else 120905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 121048e59246SSatish Balay #endif 121105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12126bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12136bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1214fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 121505b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1216fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1217899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1218bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1219901853e0SKris Buschelman 1220dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1221bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1222bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1223bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1224bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1225bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1226bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1227bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1228bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 12297ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12307ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr); 12317ea3e4caSstefano_zampini #endif 1232c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL);CHKERRQ(ierr); 12333a40ed3dSBarry Smith PetscFunctionReturn(0); 123479bdfe76SSatish Balay } 123579bdfe76SSatish Balay 1236dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1237cee3aa6bSSatish Balay { 1238cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1239dfbe8321SBarry Smith PetscErrorCode ierr; 1240b24ad042SBarry Smith PetscInt nt; 1241cee3aa6bSSatish Balay 1242d64ed03dSBarry Smith PetscFunctionBegin; 1243e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1244e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1245e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1246e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1247ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1248f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1249ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1250f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 12513a40ed3dSBarry Smith PetscFunctionReturn(0); 1252cee3aa6bSSatish Balay } 1253cee3aa6bSSatish Balay 1254dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1255cee3aa6bSSatish Balay { 1256cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1257dfbe8321SBarry Smith PetscErrorCode ierr; 1258d64ed03dSBarry Smith 1259d64ed03dSBarry Smith PetscFunctionBegin; 1260ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1261f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1262ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1263f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12643a40ed3dSBarry Smith PetscFunctionReturn(0); 1265cee3aa6bSSatish Balay } 1266cee3aa6bSSatish Balay 1267dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1268cee3aa6bSSatish Balay { 1269cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1270dfbe8321SBarry Smith PetscErrorCode ierr; 1271cee3aa6bSSatish Balay 1272d64ed03dSBarry Smith PetscFunctionBegin; 1273cee3aa6bSSatish Balay /* do nondiagonal part */ 12747c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1275cee3aa6bSSatish Balay /* do local part */ 12767c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1277e4a140f6SJunchao Zhang /* add partial results together */ 1278ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1279ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12803a40ed3dSBarry Smith PetscFunctionReturn(0); 1281cee3aa6bSSatish Balay } 1282cee3aa6bSSatish Balay 1283dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1284cee3aa6bSSatish Balay { 1285cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1286dfbe8321SBarry Smith PetscErrorCode ierr; 1287cee3aa6bSSatish Balay 1288d64ed03dSBarry Smith PetscFunctionBegin; 1289cee3aa6bSSatish Balay /* do nondiagonal part */ 12907c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1291cee3aa6bSSatish Balay /* do local part */ 12927c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1293e4a140f6SJunchao Zhang /* add partial results together */ 1294e4a140f6SJunchao Zhang ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1295ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12963a40ed3dSBarry Smith PetscFunctionReturn(0); 1297cee3aa6bSSatish Balay } 1298cee3aa6bSSatish Balay 1299cee3aa6bSSatish Balay /* 1300cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1301cee3aa6bSSatish Balay diagonal block 1302cee3aa6bSSatish Balay */ 1303dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1304cee3aa6bSSatish Balay { 1305cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1306dfbe8321SBarry Smith PetscErrorCode ierr; 1307d64ed03dSBarry Smith 1308d64ed03dSBarry Smith PetscFunctionBegin; 1309e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13103a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13113a40ed3dSBarry Smith PetscFunctionReturn(0); 1312cee3aa6bSSatish Balay } 1313cee3aa6bSSatish Balay 1314f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1315cee3aa6bSSatish Balay { 1316cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1317dfbe8321SBarry Smith PetscErrorCode ierr; 1318d64ed03dSBarry Smith 1319d64ed03dSBarry Smith PetscFunctionBegin; 1320f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1321f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 13223a40ed3dSBarry Smith PetscFunctionReturn(0); 1323cee3aa6bSSatish Balay } 1324026e39d0SSatish Balay 1325b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1326acdf5bf4SSatish Balay { 1327acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 132887828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 13296849ba73SBarry Smith PetscErrorCode ierr; 1330d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1331d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1332899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1333acdf5bf4SSatish Balay 1334d64ed03dSBarry Smith PetscFunctionBegin; 1335e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1336e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1337acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1338acdf5bf4SSatish Balay 1339acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1340acdf5bf4SSatish Balay /* 1341acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1342acdf5bf4SSatish Balay */ 1343acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1344b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1345bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1346acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 134726fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1348acdf5bf4SSatish Balay } 1349dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1350acdf5bf4SSatish Balay } 1351d9d09a02SSatish Balay lrow = row - brstart; 1352acdf5bf4SSatish Balay 1353acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1354acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1355acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1356f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1357f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1358acdf5bf4SSatish Balay nztot = nzA + nzB; 1359acdf5bf4SSatish Balay 1360acdf5bf4SSatish Balay cmap = mat->garray; 1361acdf5bf4SSatish Balay if (v || idx) { 1362acdf5bf4SSatish Balay if (nztot) { 1363acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1364b24ad042SBarry Smith PetscInt imark = -1; 1365acdf5bf4SSatish Balay if (v) { 1366acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1367acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1368d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1369acdf5bf4SSatish Balay else break; 1370acdf5bf4SSatish Balay } 1371acdf5bf4SSatish Balay imark = i; 1372acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1373acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1374acdf5bf4SSatish Balay } 1375acdf5bf4SSatish Balay if (idx) { 1376acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1377acdf5bf4SSatish Balay if (imark > -1) { 1378acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1379bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1380acdf5bf4SSatish Balay } 1381acdf5bf4SSatish Balay } else { 1382acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 138326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1384acdf5bf4SSatish Balay else break; 1385acdf5bf4SSatish Balay } 1386acdf5bf4SSatish Balay imark = i; 1387acdf5bf4SSatish Balay } 1388d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1389d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1390acdf5bf4SSatish Balay } 1391d64ed03dSBarry Smith } else { 1392d212a18eSSatish Balay if (idx) *idx = 0; 1393d212a18eSSatish Balay if (v) *v = 0; 1394d212a18eSSatish Balay } 1395acdf5bf4SSatish Balay } 1396acdf5bf4SSatish Balay *nz = nztot; 1397f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1398f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13993a40ed3dSBarry Smith PetscFunctionReturn(0); 1400acdf5bf4SSatish Balay } 1401acdf5bf4SSatish Balay 1402b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1403acdf5bf4SSatish Balay { 1404acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1405d64ed03dSBarry Smith 1406d64ed03dSBarry Smith PetscFunctionBegin; 1407e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1408acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14093a40ed3dSBarry Smith PetscFunctionReturn(0); 1410acdf5bf4SSatish Balay } 1411acdf5bf4SSatish Balay 1412dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 141358667388SSatish Balay { 141458667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1415dfbe8321SBarry Smith PetscErrorCode ierr; 1416d64ed03dSBarry Smith 1417d64ed03dSBarry Smith PetscFunctionBegin; 141858667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 141958667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14203a40ed3dSBarry Smith PetscFunctionReturn(0); 142158667388SSatish Balay } 14220ac07820SSatish Balay 1423dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14240ac07820SSatish Balay { 14254e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14264e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1427dfbe8321SBarry Smith PetscErrorCode ierr; 14283966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 14290ac07820SSatish Balay 1430d64ed03dSBarry Smith PetscFunctionBegin; 1431d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 143226fbe8dcSKarl Rupp 14334e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 143426fbe8dcSKarl Rupp 14350e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1436de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 143726fbe8dcSKarl Rupp 14384e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 143926fbe8dcSKarl Rupp 14400e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1441de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 144226fbe8dcSKarl Rupp 14430ac07820SSatish Balay if (flag == MAT_LOCAL) { 14444e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14454e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14464e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14474e220ebcSLois Curfman McInnes info->memory = isend[3]; 14484e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14490ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14503966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 145126fbe8dcSKarl Rupp 14524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14570ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14583966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 145926fbe8dcSKarl Rupp 14604e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14614e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14624e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14634e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14644e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1465ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14664e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14674e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14684e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14693a40ed3dSBarry Smith PetscFunctionReturn(0); 14700ac07820SSatish Balay } 14710ac07820SSatish Balay 1472ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 147358667388SSatish Balay { 147458667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1475dfbe8321SBarry Smith PetscErrorCode ierr; 147658667388SSatish Balay 1477d64ed03dSBarry Smith PetscFunctionBegin; 147812c028f9SKris Buschelman switch (op) { 1479512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 148012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 148128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1482a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 148312c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 148443674050SBarry Smith MatCheckPreallocated(A,1); 14854e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14864e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 148712c028f9SKris Buschelman break; 148812c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148943674050SBarry Smith MatCheckPreallocated(A,1); 14904e0d8c25SBarry Smith a->roworiented = flg; 149126fbe8dcSKarl Rupp 14924e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14934e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 149412c028f9SKris Buschelman break; 14954e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1496071fcb05SBarry Smith case MAT_SORTED_FULL: 1497290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 149812c028f9SKris Buschelman break; 149912c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15004e0d8c25SBarry Smith a->donotstash = flg; 150112c028f9SKris Buschelman break; 150212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15034e0d8c25SBarry Smith a->ht_flag = flg; 1504abf3b562SBarry Smith a->ht_fact = 1.39; 150512c028f9SKris Buschelman break; 150677e54ba9SKris Buschelman case MAT_SYMMETRIC: 150777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15082188ac68SBarry Smith case MAT_HERMITIAN: 1509c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15102188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 151143674050SBarry Smith MatCheckPreallocated(A,1); 15124e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 151377e54ba9SKris Buschelman break; 151412c028f9SKris Buschelman default: 1515ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1516d64ed03dSBarry Smith } 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 151858667388SSatish Balay } 151958667388SSatish Balay 1520fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 15210ac07820SSatish Balay { 15220ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15230ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15240ac07820SSatish Balay Mat B; 1525dfbe8321SBarry Smith PetscErrorCode ierr; 1526d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1527d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 15283eda8832SBarry Smith MatScalar *a; 15290ac07820SSatish Balay 1530d64ed03dSBarry Smith PetscFunctionBegin; 1531cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 1532ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1533d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 15347adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 15352e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15360298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1537fc4dec0aSBarry Smith } else { 1538fc4dec0aSBarry Smith B = *matout; 1539fc4dec0aSBarry Smith } 15400ac07820SSatish Balay 15410ac07820SSatish Balay /* copy over the A part */ 15420ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15430ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1544785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 15450ac07820SSatish Balay 15460ac07820SSatish Balay for (i=0; i<mbs; i++) { 1547899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 154826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15490ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1550899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 15510ac07820SSatish Balay for (k=0; k<bs; k++) { 155297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 155326fbe8dcSKarl Rupp 15540ac07820SSatish Balay col++; a += bs; 15550ac07820SSatish Balay } 15560ac07820SSatish Balay } 15570ac07820SSatish Balay } 15580ac07820SSatish Balay /* copy over the B part */ 15590ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15600ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15610ac07820SSatish Balay for (i=0; i<mbs; i++) { 1562899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 156326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15640ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15650ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15660ac07820SSatish Balay for (k=0; k<bs; k++) { 156797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 156826fbe8dcSKarl Rupp col++; 156926fbe8dcSKarl Rupp a += bs; 15700ac07820SSatish Balay } 15710ac07820SSatish Balay } 15720ac07820SSatish Balay } 1573606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15740ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15750ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15760ac07820SSatish Balay 1577cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157826fbe8dcSKarl Rupp else { 157928be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 15800ac07820SSatish Balay } 15813a40ed3dSBarry Smith PetscFunctionReturn(0); 15820ac07820SSatish Balay } 15830e95ebc0SSatish Balay 1584dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15850e95ebc0SSatish Balay { 158636c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 158736c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1588dfbe8321SBarry Smith PetscErrorCode ierr; 1589b24ad042SBarry Smith PetscInt s1,s2,s3; 15900e95ebc0SSatish Balay 1591d64ed03dSBarry Smith PetscFunctionBegin; 159236c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 159336c4a09eSSatish Balay if (rr) { 159436c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1595e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 159636c4a09eSSatish Balay /* Overlap communication with computation. */ 1597ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 159836c4a09eSSatish Balay } 15990e95ebc0SSatish Balay if (ll) { 16000e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1601e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 16020298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16030e95ebc0SSatish Balay } 160436c4a09eSSatish Balay /* scale the diagonal block */ 160536c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 160636c4a09eSSatish Balay 160736c4a09eSSatish Balay if (rr) { 160836c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1609ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16100298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 161136c4a09eSSatish Balay } 16123a40ed3dSBarry Smith PetscFunctionReturn(0); 16130e95ebc0SSatish Balay } 16140e95ebc0SSatish Balay 16152b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16160ac07820SSatish Balay { 16170ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 161865a92638SMatthew G. Knepley PetscInt *lrows; 16196e520ac8SStefano Zampini PetscInt r, len; 162094342113SStefano Zampini PetscBool cong; 16216849ba73SBarry Smith PetscErrorCode ierr; 16220ac07820SSatish Balay 1623d64ed03dSBarry Smith PetscFunctionBegin; 16246e520ac8SStefano Zampini /* get locally owned rows */ 16256e520ac8SStefano Zampini ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr); 162697b48c8fSBarry Smith /* fix right hand side if needed */ 162797b48c8fSBarry Smith if (x && b) { 162865a92638SMatthew G. Knepley const PetscScalar *xx; 162965a92638SMatthew G. Knepley PetscScalar *bb; 163065a92638SMatthew G. Knepley 163197b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 163297b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 163365a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 163497b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 163597b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 163697b48c8fSBarry Smith } 163797b48c8fSBarry Smith 16380ac07820SSatish Balay /* actually zap the local rows */ 163972dacd9aSBarry Smith /* 164072dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1641a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 164272dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 164372dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 164472dacd9aSBarry Smith 164572dacd9aSBarry Smith */ 16469c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1647a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 164894342113SStefano Zampini ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr); 164994342113SStefano Zampini if ((diag != 0.0) && cong) { 1650a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr); 1651f4df32b1SMatthew Knepley } else if (diag != 0.0) { 165265a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1653e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1654512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 165565a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 165665a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1657f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1658a07cd24cSSatish Balay } 1659a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1660a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16619c957beeSSatish Balay } else { 1662a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1663a07cd24cSSatish Balay } 1664606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 16654f9cfa9eSBarry Smith 16664f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16674f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1668e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1669b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1670e56f5c9eSBarry Smith } 16713a40ed3dSBarry Smith PetscFunctionReturn(0); 16720ac07820SSatish Balay } 167372dacd9aSBarry Smith 16746f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16756f0a72daSMatthew G. Knepley { 16766f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16776f0a72daSMatthew G. Knepley PetscErrorCode ierr; 1678131c27b5Sprj- PetscMPIInt n = A->rmap->n,p = 0; 1679131c27b5Sprj- PetscInt i,j,k,r,len = 0,row,col,count; 16806f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 16816f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16826f0a72daSMatthew G. Knepley PetscSF sf; 16836f0a72daSMatthew G. Knepley const PetscScalar *xx; 16846f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 16856f0a72daSMatthew G. Knepley Vec xmask,lmask; 16866f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 16876f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16886f0a72daSMatthew G. Knepley PetscScalar *aa; 16896f0a72daSMatthew G. Knepley 16906f0a72daSMatthew G. Knepley PetscFunctionBegin; 16916f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16926f0a72daSMatthew G. Knepley ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 16936f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16946f0a72daSMatthew G. Knepley ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr); 16956f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16966f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16975ba17502SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 16985ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16995ba17502SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 17005ba17502SJed Brown } 17016f0a72daSMatthew G. Knepley rrows[r].rank = p; 17026f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 17036f0a72daSMatthew G. Knepley } 17046f0a72daSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 17056f0a72daSMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 17066f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17076f0a72daSMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 17086f0a72daSMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 17096f0a72daSMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 17106f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17116f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 17126f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17136f0a72daSMatthew G. Knepley ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr); 17146f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 17152a7a6963SBarry Smith ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr); 17166f0a72daSMatthew G. Knepley ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr); 17176f0a72daSMatthew G. Knepley ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr); 17186f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 17196f0a72daSMatthew G. Knepley ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr); 17206f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17216f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17226f0a72daSMatthew G. Knepley ierr = VecDestroy(&xmask);CHKERRQ(ierr); 17236f0a72daSMatthew G. Knepley if (x) { 17246f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17256f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17266f0a72daSMatthew G. Knepley ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr); 17276f0a72daSMatthew G. Knepley ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 17286f0a72daSMatthew G. Knepley } 17296f0a72daSMatthew G. Knepley ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr); 17306f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17316f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17326f0a72daSMatthew G. Knepley row = lrows[i]; 17336f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 17346f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 17356f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17366f0a72daSMatthew G. Knepley aa[0] = 0.0; 17376f0a72daSMatthew G. Knepley aa += bs; 17386f0a72daSMatthew G. Knepley } 17396f0a72daSMatthew G. Knepley } 17406f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17416f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17426f0a72daSMatthew G. Knepley row = i/bs; 17436f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 17446f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17456f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 17466f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17476f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 174889ae1891SBarry Smith if (x) bb[i] -= aa[0]*xx[col]; 17496f0a72daSMatthew G. Knepley aa[0] = 0.0; 17506f0a72daSMatthew G. Knepley } 17516f0a72daSMatthew G. Knepley } 17526f0a72daSMatthew G. Knepley } 17536f0a72daSMatthew G. Knepley } 17546f0a72daSMatthew G. Knepley if (x) { 17556f0a72daSMatthew G. Knepley ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 17566f0a72daSMatthew G. Knepley ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr); 17576f0a72daSMatthew G. Knepley } 17586f0a72daSMatthew G. Knepley ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr); 17596f0a72daSMatthew G. Knepley ierr = VecDestroy(&lmask);CHKERRQ(ierr); 17606f0a72daSMatthew G. Knepley ierr = PetscFree(lrows);CHKERRQ(ierr); 17614f9cfa9eSBarry Smith 17624f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17634f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 17644f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1765b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17664f9cfa9eSBarry Smith } 17676f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17686f0a72daSMatthew G. Knepley } 17696f0a72daSMatthew G. Knepley 1770dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1771bb5a7306SBarry Smith { 1772bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1773dfbe8321SBarry Smith PetscErrorCode ierr; 1774d64ed03dSBarry Smith 1775d64ed03dSBarry Smith PetscFunctionBegin; 1776bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17773a40ed3dSBarry Smith PetscFunctionReturn(0); 1778bb5a7306SBarry Smith } 1779bb5a7306SBarry Smith 17806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 17810ac07820SSatish Balay 1782ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 17837fc3c18eSBarry Smith { 17847fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17857fc3c18eSBarry Smith Mat a,b,c,d; 1786ace3abfcSBarry Smith PetscBool flg; 1787dfbe8321SBarry Smith PetscErrorCode ierr; 17887fc3c18eSBarry Smith 17897fc3c18eSBarry Smith PetscFunctionBegin; 17907fc3c18eSBarry Smith a = matA->A; b = matA->B; 17917fc3c18eSBarry Smith c = matB->A; d = matB->B; 17927fc3c18eSBarry Smith 17937fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1794abc0a331SBarry Smith if (flg) { 17957fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17967fc3c18eSBarry Smith } 1797b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17987fc3c18eSBarry Smith PetscFunctionReturn(0); 17997fc3c18eSBarry Smith } 18007fc3c18eSBarry Smith 18013c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 18023c896bc6SHong Zhang { 18033c896bc6SHong Zhang PetscErrorCode ierr; 18043c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 18053c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 18063c896bc6SHong Zhang 18073c896bc6SHong Zhang PetscFunctionBegin; 18083c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18093c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18103c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 18113c896bc6SHong Zhang } else { 18123c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18133c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18143c896bc6SHong Zhang } 1815cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 18163c896bc6SHong Zhang PetscFunctionReturn(0); 18173c896bc6SHong Zhang } 1818273d9f13SBarry Smith 18194994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1820273d9f13SBarry Smith { 1821dfbe8321SBarry Smith PetscErrorCode ierr; 1822273d9f13SBarry Smith 1823273d9f13SBarry Smith PetscFunctionBegin; 1824535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1825273d9f13SBarry Smith PetscFunctionReturn(0); 1826273d9f13SBarry Smith } 1827273d9f13SBarry Smith 18284de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 18294de5dceeSHong Zhang { 1830001ddc4fSHong Zhang PetscErrorCode ierr; 1831001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 18324de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 18334de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 18344de5dceeSHong Zhang 18354de5dceeSHong Zhang PetscFunctionBegin; 1836001ddc4fSHong Zhang ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr); 18374de5dceeSHong Zhang PetscFunctionReturn(0); 18384de5dceeSHong Zhang } 18394de5dceeSHong Zhang 18404fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18414fe895cdSHong Zhang { 18424fe895cdSHong Zhang PetscErrorCode ierr; 18434fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 18444fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18454fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 1846b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs*Y->rmap->bs; 18474fe895cdSHong Zhang 18484fe895cdSHong Zhang PetscFunctionBegin; 18494fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18504fe895cdSHong Zhang PetscScalar alpha = a; 18514fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 18524fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 1853b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 18548b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18554fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 18564fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 1857b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 18588b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1859a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1860ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1861ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 18624fe895cdSHong Zhang } else { 18634de5dceeSHong Zhang Mat B; 18644de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18654de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 18664de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 18674de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 18684de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 18694de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 18704de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 18714de5dceeSHong Zhang ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr); 18724de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 18734de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 18744de5dceeSHong Zhang ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 18754de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18764de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 187728be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 18784de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 18794de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 18804fe895cdSHong Zhang } 18814fe895cdSHong Zhang PetscFunctionReturn(0); 18824fe895cdSHong Zhang } 18834fe895cdSHong Zhang 188499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 188599cafbc1SBarry Smith { 188699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 188799cafbc1SBarry Smith PetscErrorCode ierr; 188899cafbc1SBarry Smith 188999cafbc1SBarry Smith PetscFunctionBegin; 189099cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 189199cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 189299cafbc1SBarry Smith PetscFunctionReturn(0); 189399cafbc1SBarry Smith } 189499cafbc1SBarry Smith 189599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 189699cafbc1SBarry Smith { 189799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 189899cafbc1SBarry Smith PetscErrorCode ierr; 189999cafbc1SBarry Smith 190099cafbc1SBarry Smith PetscFunctionBegin; 190199cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 190299cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 190399cafbc1SBarry Smith PetscFunctionReturn(0); 190499cafbc1SBarry Smith } 190599cafbc1SBarry Smith 19067dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 19074aa3045dSJed Brown { 19084aa3045dSJed Brown PetscErrorCode ierr; 19094aa3045dSJed Brown IS iscol_local; 19104aa3045dSJed Brown PetscInt csize; 19114aa3045dSJed Brown 19124aa3045dSJed Brown PetscFunctionBegin; 19134aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1914b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1915b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1916e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1917b79d0421SJed Brown } else { 19184aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1919b79d0421SJed Brown } 19207dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1921b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1922b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 19236bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 1924b79d0421SJed Brown } 19254aa3045dSJed Brown PetscFunctionReturn(0); 19264aa3045dSJed Brown } 192717df9f7cSHong Zhang 192882094794SBarry Smith /* 192982094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 193082094794SBarry Smith in local and then by concatenating the local matrices the end result. 19317dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19328f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 193382094794SBarry Smith */ 19347dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 193582094794SBarry Smith { 193682094794SBarry Smith PetscErrorCode ierr; 193782094794SBarry Smith PetscMPIInt rank,size; 193882094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 1939c9ffca76SHong Zhang PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 194029dcf524SDmitry Karpeev Mat M,Mreuse; 194182094794SBarry Smith MatScalar *vwork,*aa; 1942ce94432eSBarry Smith MPI_Comm comm; 194329dcf524SDmitry Karpeev IS isrow_new, iscol_new; 194482094794SBarry Smith Mat_SeqBAIJ *aij; 194582094794SBarry Smith 194682094794SBarry Smith PetscFunctionBegin; 1947ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 194882094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 194982094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 195029dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 195129dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 195229dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 195329dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 195482094794SBarry Smith 195582094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 195682094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 1957e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 19587dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse);CHKERRQ(ierr); 195982094794SBarry Smith } else { 19607dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse);CHKERRQ(ierr); 196182094794SBarry Smith } 196229dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 196329dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 196482094794SBarry Smith /* 196582094794SBarry Smith m - number of local rows 196682094794SBarry Smith n - number of columns (same on all processors) 196782094794SBarry Smith rstart - first row in new global matrix generated 196882094794SBarry Smith */ 196982094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 197082094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 197182094794SBarry Smith m = m/bs; 197282094794SBarry Smith n = n/bs; 197382094794SBarry Smith 197482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197582094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 197682094794SBarry Smith ii = aij->i; 197782094794SBarry Smith jj = aij->j; 197882094794SBarry Smith 197982094794SBarry Smith /* 198082094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 198182094794SBarry Smith portions of the matrix in order to do correct preallocation 198282094794SBarry Smith */ 198382094794SBarry Smith 198482094794SBarry Smith /* first get start and end of "diagonal" columns */ 198582094794SBarry Smith if (csize == PETSC_DECIDE) { 198682094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 198782094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 198882094794SBarry Smith nlocal = m; 198982094794SBarry Smith } else { 199082094794SBarry Smith nlocal = n/size + ((n % size) > rank); 199182094794SBarry Smith } 199282094794SBarry Smith } else { 199382094794SBarry Smith nlocal = csize/bs; 199482094794SBarry Smith } 199582094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 199682094794SBarry Smith rstart = rend - nlocal; 199765e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 199882094794SBarry Smith 199982094794SBarry Smith /* next, compute all the lengths */ 2000dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 200182094794SBarry Smith for (i=0; i<m; i++) { 200282094794SBarry Smith jend = ii[i+1] - ii[i]; 200382094794SBarry Smith olen = 0; 200482094794SBarry Smith dlen = 0; 200582094794SBarry Smith for (j=0; j<jend; j++) { 200682094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 200782094794SBarry Smith else dlen++; 200882094794SBarry Smith jj++; 200982094794SBarry Smith } 201082094794SBarry Smith olens[i] = olen; 201182094794SBarry Smith dlens[i] = dlen; 201282094794SBarry Smith } 201382094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 201482094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 201582094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 201682094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 20178f46ffcaSHong Zhang ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2018eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 201982094794SBarry Smith } else { 202082094794SBarry Smith PetscInt ml,nl; 202182094794SBarry Smith 202282094794SBarry Smith M = *newmat; 202382094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2024e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 202582094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 202682094794SBarry Smith /* 202782094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 202882094794SBarry Smith rather than the slower MatSetValues(). 202982094794SBarry Smith */ 203082094794SBarry Smith M->was_assembled = PETSC_TRUE; 203182094794SBarry Smith M->assembled = PETSC_FALSE; 203282094794SBarry Smith } 203382094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 203482094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 203582094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 203682094794SBarry Smith ii = aij->i; 203782094794SBarry Smith jj = aij->j; 203882094794SBarry Smith aa = aij->a; 203982094794SBarry Smith for (i=0; i<m; i++) { 204082094794SBarry Smith row = rstart/bs + i; 204182094794SBarry Smith nz = ii[i+1] - ii[i]; 204282094794SBarry Smith cwork = jj; jj += nz; 204375f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 204482094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 204582094794SBarry Smith } 204682094794SBarry Smith 204782094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 204882094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 204982094794SBarry Smith *newmat = M; 205082094794SBarry Smith 205182094794SBarry Smith /* save submatrix used in processor for next request */ 205282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 205382094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 205482094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 205582094794SBarry Smith } 205682094794SBarry Smith PetscFunctionReturn(0); 205782094794SBarry Smith } 205882094794SBarry Smith 205982094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 206082094794SBarry Smith { 206182094794SBarry Smith MPI_Comm comm,pcomm; 2062a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 206382094794SBarry Smith const PetscInt *rows; 2064dbf0e21dSBarry Smith PetscMPIInt size; 2065a0a83eb5SRémi Lacroix IS crowp,lcolp; 206682094794SBarry Smith PetscErrorCode ierr; 206782094794SBarry Smith 206882094794SBarry Smith PetscFunctionBegin; 206982094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 207082094794SBarry Smith /* make a collective version of 'rowp' */ 207182094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 207282094794SBarry Smith if (pcomm==comm) { 207382094794SBarry Smith crowp = rowp; 207482094794SBarry Smith } else { 207582094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 207682094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 207770b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 207882094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 207982094794SBarry Smith } 2080a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2081a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 208282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2083dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2084dbf0e21dSBarry Smith if (size==1) { 208582094794SBarry Smith lcolp = colp; 208682094794SBarry Smith } else { 208775f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 208882094794SBarry Smith } 2089dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 209075f6568bSJed Brown /* now we just get the submatrix */ 20917afc1a8bSJed Brown ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr); 20927dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2093a0a83eb5SRémi Lacroix /* clean up */ 2094a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2095a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2096a0a83eb5SRémi Lacroix } 2097dbf0e21dSBarry Smith if (size>1) { 20986bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 209982094794SBarry Smith } 210082094794SBarry Smith PetscFunctionReturn(0); 210182094794SBarry Smith } 210282094794SBarry Smith 21037087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 21048c7482ecSBarry Smith { 21058c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 21068c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 21078c7482ecSBarry Smith 21088c7482ecSBarry Smith PetscFunctionBegin; 210926fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 211026fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 21118c7482ecSBarry Smith PetscFunctionReturn(0); 21128c7482ecSBarry Smith } 21138c7482ecSBarry Smith 2114d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2115f6d58c54SBarry Smith { 2116f6d58c54SBarry Smith Mat B; 2117f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2118f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2119f6d58c54SBarry Smith Mat_SeqAIJ *b; 2120f6d58c54SBarry Smith PetscErrorCode ierr; 2121f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2122f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2123f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2124f6d58c54SBarry Smith 2125f6d58c54SBarry Smith PetscFunctionBegin; 2126ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2127ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2128f6d58c54SBarry Smith 2129f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2130f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2131f6d58c54SBarry Smith */ 2132854ce69bSBarry Smith ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr); 2133f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2134f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2135f6d58c54SBarry Smith } 2136785e854fSJed Brown ierr = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr); 2137f6d58c54SBarry Smith displs = recvcounts + size; 2138f6d58c54SBarry Smith for (i=0; i<size; i++) { 2139f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2140f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2141f6d58c54SBarry Smith } 2142f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2143ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2144f6d58c54SBarry Smith #else 21453d3eaba7SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2146ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2147f6d58c54SBarry Smith #endif 2148f6d58c54SBarry Smith /* --------------------------------------------------------------- 2149f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2150f6d58c54SBarry Smith */ 2151f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2152f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2153f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2154f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2155f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2156f6d58c54SBarry Smith 2157f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2158f6d58c54SBarry Smith Copy my part of matrix column indices over 2159f6d58c54SBarry Smith */ 2160f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2161f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2162f6d58c54SBarry Smith a_jsendbuf = ad->j; 2163f6d58c54SBarry Smith b_jsendbuf = bd->j; 2164f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2165f6d58c54SBarry Smith cnt = 0; 2166f6d58c54SBarry Smith for (i=0; i<n; i++) { 2167f6d58c54SBarry Smith 2168f6d58c54SBarry Smith /* put in lower diagonal portion */ 2169f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2170f6d58c54SBarry Smith while (m > 0) { 2171f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2172f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2173f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2174f6d58c54SBarry Smith m--; 2175f6d58c54SBarry Smith } 2176f6d58c54SBarry Smith 2177f6d58c54SBarry Smith /* put in diagonal portion */ 2178f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2179f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2180f6d58c54SBarry Smith } 2181f6d58c54SBarry Smith 2182f6d58c54SBarry Smith /* put in upper diagonal portion */ 2183f6d58c54SBarry Smith while (m-- > 0) { 2184f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2185f6d58c54SBarry Smith } 2186f6d58c54SBarry Smith } 2187e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2188f6d58c54SBarry Smith 2189f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2190f6d58c54SBarry Smith Gather all column indices to all processors 2191f6d58c54SBarry Smith */ 2192f6d58c54SBarry Smith for (i=0; i<size; i++) { 2193f6d58c54SBarry Smith recvcounts[i] = 0; 2194f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2195f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2196f6d58c54SBarry Smith } 2197f6d58c54SBarry Smith } 2198f6d58c54SBarry Smith displs[0] = 0; 2199f6d58c54SBarry Smith for (i=1; i<size; i++) { 2200f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2201f6d58c54SBarry Smith } 2202f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2203ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2204f6d58c54SBarry Smith #else 2205ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2206f6d58c54SBarry Smith #endif 2207f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2208f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2209f6d58c54SBarry Smith */ 2210f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2211580bdb30SBarry Smith ierr = PetscArraycpy(b->ilen,lens,A->rmap->N/bs);CHKERRQ(ierr); 2212f6d58c54SBarry Smith /* set the b->i indices */ 2213f6d58c54SBarry Smith b->i[0] = 0; 2214f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2215f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2216f6d58c54SBarry Smith } 2217f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2218f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2219f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2220f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2221f6d58c54SBarry Smith 2222f6d58c54SBarry Smith if (A->symmetric) { 2223f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2224f6d58c54SBarry Smith } else if (A->hermitian) { 2225f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2226f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2227f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2228f6d58c54SBarry Smith } 2229f6d58c54SBarry Smith *newmat = B; 2230f6d58c54SBarry Smith PetscFunctionReturn(0); 2231f6d58c54SBarry Smith } 2232f6d58c54SBarry Smith 2233b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2234b1a666ecSBarry Smith { 2235b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2236b1a666ecSBarry Smith PetscErrorCode ierr; 2237b1a666ecSBarry Smith Vec bb1 = 0; 2238b1a666ecSBarry Smith 2239b1a666ecSBarry Smith PetscFunctionBegin; 2240b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2241b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2242b1a666ecSBarry Smith PetscFunctionReturn(0); 2243b1a666ecSBarry Smith } 2244b1a666ecSBarry Smith 22454e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 22464e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 22474e980039SJed Brown } 22484e980039SJed Brown 2249b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2250b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2251b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2252b1a666ecSBarry Smith its--; 2253b1a666ecSBarry Smith } 2254b1a666ecSBarry Smith 2255b1a666ecSBarry Smith while (its--) { 2256b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2257b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2258b1a666ecSBarry Smith 2259b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2260b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2261b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2262b1a666ecSBarry Smith 2263b1a666ecSBarry Smith /* local sweep */ 2264b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2265b1a666ecSBarry Smith } 2266b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2267b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2268b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2269b1a666ecSBarry Smith its--; 2270b1a666ecSBarry Smith } 2271b1a666ecSBarry Smith while (its--) { 2272b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2273b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2274b1a666ecSBarry Smith 2275b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2276b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2277b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2278b1a666ecSBarry Smith 2279b1a666ecSBarry Smith /* local sweep */ 2280b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2281b1a666ecSBarry Smith } 2282b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2283b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2284b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2285b1a666ecSBarry Smith its--; 2286b1a666ecSBarry Smith } 2287b1a666ecSBarry Smith while (its--) { 2288b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2289b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2290b1a666ecSBarry Smith 2291b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2292b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2293b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2294b1a666ecSBarry Smith 2295b1a666ecSBarry Smith /* local sweep */ 2296b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2297b1a666ecSBarry Smith } 2298ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2299b1a666ecSBarry Smith 23006bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2301b1a666ecSBarry Smith PetscFunctionReturn(0); 2302b1a666ecSBarry Smith } 2303b1a666ecSBarry Smith 230447f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 230547f7623dSRémi Lacroix { 230647f7623dSRémi Lacroix PetscErrorCode ierr; 230747f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 230847f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 230947f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 231047f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 231147f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 231247f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 231347f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 231447f7623dSRémi Lacroix PetscReal *work; 231547f7623dSRémi Lacroix 231647f7623dSRémi Lacroix PetscFunctionBegin; 231747f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 23181795a4d1SJed Brown ierr = PetscCalloc1(N,&work);CHKERRQ(ierr); 231947f7623dSRémi Lacroix if (type == NORM_2) { 232047f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 232147f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 232247f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 232347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 232447f7623dSRémi Lacroix a_val++; 232547f7623dSRémi Lacroix } 232647f7623dSRémi Lacroix } 232747f7623dSRémi Lacroix } 232847f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 232947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 233047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 233147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 233247f7623dSRémi Lacroix b_val++; 233347f7623dSRémi Lacroix } 233447f7623dSRémi Lacroix } 233547f7623dSRémi Lacroix } 233647f7623dSRémi Lacroix } else if (type == NORM_1) { 233747f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 233847f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 233947f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 234047f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 234147f7623dSRémi Lacroix a_val++; 234247f7623dSRémi Lacroix } 234347f7623dSRémi Lacroix } 234447f7623dSRémi Lacroix } 234547f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 234647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 234747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 234847f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 234947f7623dSRémi Lacroix b_val++; 235047f7623dSRémi Lacroix } 235147f7623dSRémi Lacroix } 235247f7623dSRémi Lacroix } 235347f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 235447f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 235547f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 235647f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 235747f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 235847f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 235947f7623dSRémi Lacroix a_val++; 236047f7623dSRémi Lacroix } 236147f7623dSRémi Lacroix } 236247f7623dSRémi Lacroix } 236347f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 236447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 236547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 236647f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 236747f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 236847f7623dSRémi Lacroix b_val++; 236947f7623dSRémi Lacroix } 237047f7623dSRémi Lacroix } 237147f7623dSRémi Lacroix } 237247f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 237347f7623dSRémi Lacroix if (type == NORM_INFINITY) { 2374b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 237547f7623dSRémi Lacroix } else { 2376b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 237747f7623dSRémi Lacroix } 237847f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 237947f7623dSRémi Lacroix if (type == NORM_2) { 238047f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 238147f7623dSRémi Lacroix } 238247f7623dSRémi Lacroix PetscFunctionReturn(0); 238347f7623dSRémi Lacroix } 238447f7623dSRémi Lacroix 2385713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2386bbead8a2SBarry Smith { 2387bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2388bbead8a2SBarry Smith PetscErrorCode ierr; 2389bbead8a2SBarry Smith 2390bbead8a2SBarry Smith PetscFunctionBegin; 2391bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 23927b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23937b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23947b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2395bbead8a2SBarry Smith PetscFunctionReturn(0); 2396bbead8a2SBarry Smith } 2397bbead8a2SBarry Smith 23987d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 23997d68702bSBarry Smith { 24007d68702bSBarry Smith PetscErrorCode ierr; 24017d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 24026f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 24037d68702bSBarry Smith 24047d68702bSBarry Smith PetscFunctionBegin; 24056f33a894SBarry Smith if (!Y->preallocated) { 24067d68702bSBarry Smith ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 24076f33a894SBarry Smith } else if (!aij->nz) { 2408b83222d8SBarry Smith PetscInt nonew = aij->nonew; 24096f33a894SBarry Smith ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 2410b83222d8SBarry Smith aij->nonew = nonew; 24117d68702bSBarry Smith } 24127d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 24137d68702bSBarry Smith PetscFunctionReturn(0); 24147d68702bSBarry Smith } 24158c7482ecSBarry Smith 24163b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 24173b49f96aSBarry Smith { 24183b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 24193b49f96aSBarry Smith PetscErrorCode ierr; 24203b49f96aSBarry Smith 24213b49f96aSBarry Smith PetscFunctionBegin; 24223b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 24233b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 24243b49f96aSBarry Smith if (d) { 24253b49f96aSBarry Smith PetscInt rstart; 24263b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 24273b49f96aSBarry Smith *d += rstart/A->rmap->bs; 24283b49f96aSBarry Smith 24293b49f96aSBarry Smith } 24303b49f96aSBarry Smith PetscFunctionReturn(0); 24313b49f96aSBarry Smith } 24323b49f96aSBarry Smith 2433a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 2434a5b7ff6bSBarry Smith { 2435a5b7ff6bSBarry Smith PetscFunctionBegin; 2436a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 2437a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2438a5b7ff6bSBarry Smith } 2439a5b7ff6bSBarry Smith 244079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24413964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2442cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2443cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2444cc2dc46cSBarry Smith MatMult_MPIBAIJ, 244597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24467c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24477c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2448cc2dc46cSBarry Smith 0, 2449cc2dc46cSBarry Smith 0, 2450cc2dc46cSBarry Smith 0, 245197304618SKris Buschelman /*10*/ 0, 2452cc2dc46cSBarry Smith 0, 2453cc2dc46cSBarry Smith 0, 2454b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2455cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 245697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24577fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2458cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2459cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2460cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 246197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2462cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2463cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2464cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2465d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2466cc2dc46cSBarry Smith 0, 2467cc2dc46cSBarry Smith 0, 2468cc2dc46cSBarry Smith 0, 2469cc2dc46cSBarry Smith 0, 24704994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2471273d9f13SBarry Smith 0, 2472cc2dc46cSBarry Smith 0, 2473a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2474cc2dc46cSBarry Smith 0, 2475d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2476cc2dc46cSBarry Smith 0, 2477cc2dc46cSBarry Smith 0, 2478cc2dc46cSBarry Smith 0, 2479cc2dc46cSBarry Smith 0, 2480d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24817dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2482cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2483cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24843c896bc6SHong Zhang MatCopy_MPIBAIJ, 2485d519adbfSMatthew Knepley /*44*/ 0, 2486cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24877d68702bSBarry Smith MatShift_MPIBAIJ, 2488cc2dc46cSBarry Smith 0, 24896f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2490f73d5cc4SBarry Smith /*49*/ 0, 2491cc2dc46cSBarry Smith 0, 2492cc2dc46cSBarry Smith 0, 2493cc2dc46cSBarry Smith 0, 2494cc2dc46cSBarry Smith 0, 249593dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2496cc2dc46cSBarry Smith 0, 2497cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 249882094794SBarry Smith MatPermute_MPIBAIJ, 2499cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 25007dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2501f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2502f14a1c24SBarry Smith MatView_MPIBAIJ, 2503357abbc8SBarry Smith 0, 25047843d17aSBarry Smith 0, 2505d519adbfSMatthew Knepley /*64*/ 0, 25067843d17aSBarry Smith 0, 25077843d17aSBarry Smith 0, 25087843d17aSBarry Smith 0, 25097843d17aSBarry Smith 0, 2510d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 25117843d17aSBarry Smith 0, 251297304618SKris Buschelman 0, 251397304618SKris Buschelman 0, 251497304618SKris Buschelman 0, 2515d519adbfSMatthew Knepley /*74*/ 0, 2516f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 251797304618SKris Buschelman 0, 251897304618SKris Buschelman 0, 251997304618SKris Buschelman 0, 2520d519adbfSMatthew Knepley /*79*/ 0, 252197304618SKris Buschelman 0, 252297304618SKris Buschelman 0, 252397304618SKris Buschelman 0, 25245bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2525d519adbfSMatthew Knepley /*84*/ 0, 2526865e5f61SKris Buschelman 0, 2527865e5f61SKris Buschelman 0, 2528865e5f61SKris Buschelman 0, 2529865e5f61SKris Buschelman 0, 2530d519adbfSMatthew Knepley /*89*/ 0, 2531865e5f61SKris Buschelman 0, 2532865e5f61SKris Buschelman 0, 2533865e5f61SKris Buschelman 0, 2534865e5f61SKris Buschelman 0, 2535d519adbfSMatthew Knepley /*94*/ 0, 2536865e5f61SKris Buschelman 0, 2537865e5f61SKris Buschelman 0, 253899cafbc1SBarry Smith 0, 253999cafbc1SBarry Smith 0, 2540d519adbfSMatthew Knepley /*99*/ 0, 254199cafbc1SBarry Smith 0, 254299cafbc1SBarry Smith 0, 254399cafbc1SBarry Smith 0, 254499cafbc1SBarry Smith 0, 2545d519adbfSMatthew Knepley /*104*/0, 254699cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25478c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 25488c7482ecSBarry Smith 0, 25498c7482ecSBarry Smith 0, 2550d519adbfSMatthew Knepley /*109*/0, 25518c7482ecSBarry Smith 0, 25528c7482ecSBarry Smith 0, 25538c7482ecSBarry Smith 0, 25543b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2555d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 25568c7482ecSBarry Smith 0, 25574683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 25584683f7a4SShri Abhyankar 0, 25594683f7a4SShri Abhyankar 0, 25604683f7a4SShri Abhyankar /*119*/0, 25614683f7a4SShri Abhyankar 0, 25624683f7a4SShri Abhyankar 0, 2563bbead8a2SBarry Smith 0, 2564e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2565bbead8a2SBarry Smith /*124*/0, 256647f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 25673964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 25683964eb88SJed Brown 0, 25693964eb88SJed Brown 0, 25703964eb88SJed Brown /*129*/ 0, 25713964eb88SJed Brown 0, 25723964eb88SJed Brown 0, 25733964eb88SJed Brown 0, 25743964eb88SJed Brown 0, 25753964eb88SJed Brown /*134*/ 0, 25763964eb88SJed Brown 0, 25773964eb88SJed Brown 0, 25783964eb88SJed Brown 0, 25793964eb88SJed Brown 0, 258046533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2581f9426fe0SMark Adams 0, 25821919a2e2SJed Brown 0, 2583bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2584bdf6f3fcSHong Zhang 0, 2585bdf6f3fcSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ 25868c7482ecSBarry Smith }; 258779bdfe76SSatish Balay 258879bdfe76SSatish Balay 2589cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*); 2590c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 2591d94109b8SHong Zhang 2592cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2593aac34f13SBarry Smith { 2594b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 259537cd3c0dSBarry Smith PetscInt i,j,dlen,olen,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2596b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2597b8d659d7SLisandro Dalcin PetscScalar *values=0; 2598d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2599aac34f13SBarry Smith PetscErrorCode ierr; 26003bd0feecSPierre Jolivet PetscBool nooffprocentries; 2601aac34f13SBarry Smith 2602aac34f13SBarry Smith PetscFunctionBegin; 260326283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 260426283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 260526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 260626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2607e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2608d0f46423SBarry Smith m = B->rmap->n/bs; 2609d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2610d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2611d0f46423SBarry Smith cend = B->cmap->rend/bs; 2612b8d659d7SLisandro Dalcin 2613e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2614dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2615aac34f13SBarry Smith for (i=0; i<m; i++) { 2616cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2617e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2618b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 261937cd3c0dSBarry Smith dlen = 0; 262037cd3c0dSBarry Smith olen = 0; 2621cf12db73SBarry Smith JJ = jj + ii[i]; 2622b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 262337cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 262437cd3c0dSBarry Smith else dlen++; 2625aac34f13SBarry Smith JJ++; 2626aac34f13SBarry Smith } 262737cd3c0dSBarry Smith d_nnz[i] = dlen; 262837cd3c0dSBarry Smith o_nnz[i] = olen; 2629aac34f13SBarry Smith } 2630aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2631fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2632aac34f13SBarry Smith 2633b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2634b8d659d7SLisandro Dalcin if (!values) { 263537cd3c0dSBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2636b8d659d7SLisandro Dalcin } 2637b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2638b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2639cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2640cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2641bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2642cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2643b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 26443adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26453adadaf3SJed Brown PetscInt j; 26463adadaf3SJed Brown for (j=0; j<ncols; j++) { 26473adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 26483adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 26493adadaf3SJed Brown } 26503adadaf3SJed Brown } 2651aac34f13SBarry Smith } 2652aac34f13SBarry Smith 2653b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 26543bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26553bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2656aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2657aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26583bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26593bd0feecSPierre Jolivet 26607827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2661aac34f13SBarry Smith PetscFunctionReturn(0); 2662aac34f13SBarry Smith } 2663aac34f13SBarry Smith 2664aac34f13SBarry Smith /*@C 2665664954b6SBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 2666aac34f13SBarry Smith 2667d083f849SBarry Smith Collective 2668aac34f13SBarry Smith 2669aac34f13SBarry Smith Input Parameters: 26701c4f3114SJed Brown + B - the matrix 2671dfb205c3SBarry Smith . bs - the block size 2672aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2673aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2674aac34f13SBarry Smith - v - optional values in the matrix 2675aac34f13SBarry Smith 2676664954b6SBarry Smith Level: advanced 2677aac34f13SBarry Smith 267895452b02SPatrick Sanan Notes: 267995452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26803adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26813adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26823adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26833adadaf3SJed Brown block column and the second index is over columns within a block. 26843adadaf3SJed Brown 2685664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2686664954b6SBarry Smith 26873adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2688aac34f13SBarry Smith @*/ 26897087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2690aac34f13SBarry Smith { 26914ac538c5SBarry Smith PetscErrorCode ierr; 2692aac34f13SBarry Smith 2693aac34f13SBarry Smith PetscFunctionBegin; 26946ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 26956ba663aaSJed Brown PetscValidType(B,1); 26966ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 26974ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2698aac34f13SBarry Smith PetscFunctionReturn(0); 2699aac34f13SBarry Smith } 2700aac34f13SBarry Smith 2701b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2702a23d5eceSKris Buschelman { 2703a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2704dfbe8321SBarry Smith PetscErrorCode ierr; 2705535b19f3SBarry Smith PetscInt i; 27065d2a9ed1SStefano Zampini PetscMPIInt size; 2707a23d5eceSKris Buschelman 2708a23d5eceSKris Buschelman PetscFunctionBegin; 270933d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 271026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 271126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2712e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2713899cda47SBarry Smith 2714a23d5eceSKris Buschelman if (d_nnz) { 2715d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2716e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2717a23d5eceSKris Buschelman } 2718a23d5eceSKris Buschelman } 2719a23d5eceSKris Buschelman if (o_nnz) { 2720d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2721e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2722a23d5eceSKris Buschelman } 2723a23d5eceSKris Buschelman } 2724a23d5eceSKris Buschelman 2725a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2726a23d5eceSKris Buschelman b->bs2 = bs*bs; 2727d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2728d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2729d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2730d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2731a23d5eceSKris Buschelman 2732a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2733d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2734a23d5eceSKris Buschelman } 2735d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2736d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2737d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2738d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2739a23d5eceSKris Buschelman 2740cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2741cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2742cb7b82ddSBarry Smith #else 2743cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2744cb7b82ddSBarry Smith #endif 2745cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2746cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2747cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2748cb7b82ddSBarry Smith 2749cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27505d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2751cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2752cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 27535d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2754cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2755cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2756cb7b82ddSBarry Smith 2757526dfc15SBarry Smith if (!B->preallocated) { 2758f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2759d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 27609c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 27613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2762ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2763526dfc15SBarry Smith } 2764a23d5eceSKris Buschelman 2765526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2766526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2767526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2768cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2769cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2770a23d5eceSKris Buschelman PetscFunctionReturn(0); 2771a23d5eceSKris Buschelman } 2772a23d5eceSKris Buschelman 27737087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 27747087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 27755bf65638SKris Buschelman 2776cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 277782094794SBarry Smith { 277882094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 277982094794SBarry Smith PetscErrorCode ierr; 278082094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 278182094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 278282094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 278382094794SBarry Smith 278482094794SBarry Smith PetscFunctionBegin; 2785854ce69bSBarry Smith ierr = PetscMalloc1(M+1,&ii);CHKERRQ(ierr); 278682094794SBarry Smith ii[0] = 0; 278782094794SBarry Smith for (i=0; i<M; i++) { 2788e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2789e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 279082094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 27915ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27925ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 27935ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 27945ee9ba1cSJed Brown } 279582094794SBarry Smith } 2796785e854fSJed Brown ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr); 279782094794SBarry Smith cnt = 0; 279882094794SBarry Smith for (i=0; i<M; i++) { 279982094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 280082094794SBarry Smith if (garray[jo[j]] > rstart) break; 280182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 280282094794SBarry Smith } 280382094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 28045ee9ba1cSJed Brown if (jd[k] != i) { 280582094794SBarry Smith jj[cnt++] = rstart + jd[k]; 280682094794SBarry Smith } 28075ee9ba1cSJed Brown } 280882094794SBarry Smith for (; j<io[i+1]; j++) { 280982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 281082094794SBarry Smith } 281182094794SBarry Smith } 2812ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 281382094794SBarry Smith PetscFunctionReturn(0); 281482094794SBarry Smith } 281582094794SBarry Smith 2816c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 281762471d69SBarry Smith 2818cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2819b2573a8aSBarry Smith 2820cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 282162471d69SBarry Smith { 282262471d69SBarry Smith PetscErrorCode ierr; 282362471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 282462471d69SBarry Smith Mat B; 282585a69837SSatish Balay Mat_MPIAIJ *b; 282662471d69SBarry Smith 282762471d69SBarry Smith PetscFunctionBegin; 2828ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 282962471d69SBarry Smith 28300f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28310f6d62edSLisandro Dalcin B = *newmat; 28320f6d62edSLisandro Dalcin } else { 2833ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 28346d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 2835f090d951SRémi Lacroix ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 2836f090d951SRémi Lacroix ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr); 28370298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 28380298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 28390f6d62edSLisandro Dalcin } 284062471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 284162471d69SBarry Smith 28420f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28430f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr); 28440f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr); 28450f6d62edSLisandro Dalcin } else { 28466bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 28476bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2848ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 284962471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 285062471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 28516a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28526a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28530f6d62edSLisandro Dalcin } 28540f6d62edSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28550f6d62edSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28560f6d62edSLisandro Dalcin 2857511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 285828be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 285962471d69SBarry Smith } else { 286062471d69SBarry Smith *newmat = B; 286162471d69SBarry Smith } 286262471d69SBarry Smith PetscFunctionReturn(0); 286362471d69SBarry Smith } 286462471d69SBarry Smith 28650bad9183SKris Buschelman /*MC 2866fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28670bad9183SKris Buschelman 28680bad9183SKris Buschelman Options Database Keys: 28698c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28708c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28718c07d4e3SBarry Smith - -mat_use_hash_table <fact> 28720bad9183SKris Buschelman 28730bad9183SKris Buschelman Level: beginner 28740cd7f59aSBarry Smith 28750cd7f59aSBarry Smith Notes: 28760cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 28770cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 28780bad9183SKris Buschelman 2879fd292e60Sprj- .seealso: MatCreateBAIJ 28800bad9183SKris Buschelman M*/ 28810bad9183SKris Buschelman 2882cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2883c0cdd4a1SDahai Guo 28848cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2885273d9f13SBarry Smith { 2886273d9f13SBarry Smith Mat_MPIBAIJ *b; 2887dfbe8321SBarry Smith PetscErrorCode ierr; 288894ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2889273d9f13SBarry Smith 2890273d9f13SBarry Smith PetscFunctionBegin; 2891b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 289282502324SSatish Balay B->data = (void*)b; 289382502324SSatish Balay 2894273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2895273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2896273d9f13SBarry Smith 2897273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2898ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2899ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith /* build local table of row and column ownerships */ 2902854ce69bSBarry Smith ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr); 2903273d9f13SBarry Smith 2904273d9f13SBarry Smith /* build cache for off array entries formed */ 2905ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 290626fbe8dcSKarl Rupp 2907273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 29080298fd71SBarry Smith b->colmap = NULL; 29090298fd71SBarry Smith b->garray = NULL; 2910273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2911273d9f13SBarry Smith 2912273d9f13SBarry Smith /* stuff used in block assembly */ 2913273d9f13SBarry Smith b->barray = 0; 2914273d9f13SBarry Smith 2915273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2916273d9f13SBarry Smith b->lvec = 0; 2917273d9f13SBarry Smith b->Mvctx = 0; 2918273d9f13SBarry Smith 2919273d9f13SBarry Smith /* stuff for MatGetRow() */ 2920273d9f13SBarry Smith b->rowindices = 0; 2921273d9f13SBarry Smith b->rowvalues = 0; 2922273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2923273d9f13SBarry Smith 2924273d9f13SBarry Smith /* hash table stuff */ 2925273d9f13SBarry Smith b->ht = 0; 2926273d9f13SBarry Smith b->hd = 0; 2927273d9f13SBarry Smith b->ht_size = 0; 2928273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2929273d9f13SBarry Smith b->ht_fact = 0; 2930273d9f13SBarry Smith b->ht_total_ct = 0; 2931273d9f13SBarry Smith b->ht_insert_ct = 0; 2932273d9f13SBarry Smith 29337dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29347a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29357a868f3eSHong Zhang 29368c07d4e3SBarry Smith 2937bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2938bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 2939bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 29407ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29417ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr); 29427ea3e4caSstefano_zampini #endif 2943bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2944bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2945bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2946bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 2947bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 2948bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2949c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr); 295017667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 295194ae4db5SBarry Smith 295294ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 2953abf3b562SBarry Smith ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr); 295494ae4db5SBarry Smith if (flg) { 295594ae4db5SBarry Smith PetscReal fact = 1.39; 295694ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 295794ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 295894ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 295994ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 296094ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 296194ae4db5SBarry Smith } 296294ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2963273d9f13SBarry Smith PetscFunctionReturn(0); 2964273d9f13SBarry Smith } 2965273d9f13SBarry Smith 2966209238afSKris Buschelman /*MC 2967002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2968209238afSKris Buschelman 2969209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2970209238afSKris Buschelman and MATMPIBAIJ otherwise. 2971209238afSKris Buschelman 2972209238afSKris Buschelman Options Database Keys: 2973209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2974209238afSKris Buschelman 2975209238afSKris Buschelman Level: beginner 2976209238afSKris Buschelman 297769b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2978209238afSKris Buschelman M*/ 2979209238afSKris Buschelman 2980273d9f13SBarry Smith /*@C 2981aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2982273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2983273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2984273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2985273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2986273d9f13SBarry Smith 2987273d9f13SBarry Smith Collective on Mat 2988273d9f13SBarry Smith 2989273d9f13SBarry Smith Input Parameters: 29901c4f3114SJed Brown + B - the matrix 2991bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2992bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2993273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2994273d9f13SBarry Smith submatrix (same for all local rows) 2995273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2996273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29970298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 299895742e49SBarry Smith set it even if it is zero. 2999273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3000273d9f13SBarry Smith submatrix (same for all local rows). 3001273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3002273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 30030298fd71SBarry Smith each block row) or NULL. 3004273d9f13SBarry Smith 300549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3006273d9f13SBarry Smith 3007273d9f13SBarry Smith Options Database Keys: 30088c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30098c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3010273d9f13SBarry Smith 3011273d9f13SBarry Smith Notes: 3012273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3013273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3014273d9f13SBarry Smith 3015273d9f13SBarry Smith Storage Information: 3016273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3017273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3018273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3019273d9f13SBarry Smith local matrix (a rectangular submatrix). 3020273d9f13SBarry Smith 3021273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3022273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 30230298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3024273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3025273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3026273d9f13SBarry Smith 3027273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3028273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3029273d9f13SBarry Smith 3030273d9f13SBarry Smith .vb 3031273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3032a4b1a0f6SJed Brown -------------------------- 3033273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3034273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3035273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3036a4b1a0f6SJed Brown -------------------------- 3037273d9f13SBarry Smith .ve 3038273d9f13SBarry Smith 3039273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3040273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3041273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3042273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3043273d9f13SBarry Smith 3044273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3045273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3046273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3047273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3048273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3049273d9f13SBarry Smith matrices. 3050273d9f13SBarry Smith 3051aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3052aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3053aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3054aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3055aa95bbe8SBarry Smith 3056273d9f13SBarry Smith Level: intermediate 3057273d9f13SBarry Smith 3058ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3059273d9f13SBarry Smith @*/ 30607087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3061273d9f13SBarry Smith { 30624ac538c5SBarry Smith PetscErrorCode ierr; 3063273d9f13SBarry Smith 3064273d9f13SBarry Smith PetscFunctionBegin; 30656ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30666ba663aaSJed Brown PetscValidType(B,1); 30676ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 30684ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3069273d9f13SBarry Smith PetscFunctionReturn(0); 3070273d9f13SBarry Smith } 3071273d9f13SBarry Smith 307279bdfe76SSatish Balay /*@C 307369b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 307479bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 307579bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 307679bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 307779bdfe76SSatish Balay performance can be increased by more than a factor of 50. 307879bdfe76SSatish Balay 3079d083f849SBarry Smith Collective 3080db81eaa0SLois Curfman McInnes 308179bdfe76SSatish Balay Input Parameters: 3082db81eaa0SLois Curfman McInnes + comm - MPI communicator 3083bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3084bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 308579bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 308692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 308892e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 308992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 309092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3091be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3092be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 309347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 309479bdfe76SSatish Balay submatrix (same for all local rows) 309547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 309692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30970298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 309895742e49SBarry Smith and set it even if it is zero. 309947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 310079bdfe76SSatish Balay submatrix (same for all local rows). 310147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 310292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 31030298fd71SBarry Smith each block row) or NULL. 310479bdfe76SSatish Balay 310579bdfe76SSatish Balay Output Parameter: 310679bdfe76SSatish Balay . A - the matrix 310779bdfe76SSatish Balay 3108db81eaa0SLois Curfman McInnes Options Database Keys: 31098c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31108c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31113ffaccefSLois Curfman McInnes 3112175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3113f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3114175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3115175b88e8SBarry Smith 3116b259b22eSLois Curfman McInnes Notes: 311749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 311849a6f317SBarry Smith 311947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 312047a75d0bSBarry Smith 312179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 312279bdfe76SSatish Balay (possibly both). 312379bdfe76SSatish Balay 3124be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3125be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3126be79a94dSBarry Smith 312779bdfe76SSatish Balay Storage Information: 312879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 312979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 313079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 313179bdfe76SSatish Balay local matrix (a rectangular submatrix). 313279bdfe76SSatish Balay 313379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 313479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31350298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 313679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 313779bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 313879bdfe76SSatish Balay 313979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 314079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 314179bdfe76SSatish Balay 3142db81eaa0SLois Curfman McInnes .vb 3143db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3144a4b1a0f6SJed Brown -------------------------- 3145db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3146db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3147db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3148a4b1a0f6SJed Brown -------------------------- 3149db81eaa0SLois Curfman McInnes .ve 315079bdfe76SSatish Balay 315179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 315279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 315457b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 315579bdfe76SSatish Balay 3156d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3157d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 315879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 315992e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 316092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31616da5968aSLois Curfman McInnes matrices. 316279bdfe76SSatish Balay 3163027ccd11SLois Curfman McInnes Level: intermediate 3164027ccd11SLois Curfman McInnes 316569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 316679bdfe76SSatish Balay @*/ 316769b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 316879bdfe76SSatish Balay { 31696849ba73SBarry Smith PetscErrorCode ierr; 3170b24ad042SBarry Smith PetscMPIInt size; 317179bdfe76SSatish Balay 3172d64ed03dSBarry Smith PetscFunctionBegin; 3173f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3174f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3175d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3176273d9f13SBarry Smith if (size > 1) { 3177273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3178273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3179273d9f13SBarry Smith } else { 3180273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3181273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 31823914022bSBarry Smith } 31833a40ed3dSBarry Smith PetscFunctionReturn(0); 318479bdfe76SSatish Balay } 3185026e39d0SSatish Balay 31866849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31870ac07820SSatish Balay { 31880ac07820SSatish Balay Mat mat; 31890ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3190dfbe8321SBarry Smith PetscErrorCode ierr; 3191b24ad042SBarry Smith PetscInt len=0; 31920ac07820SSatish Balay 3193d64ed03dSBarry Smith PetscFunctionBegin; 31940ac07820SSatish Balay *newmat = 0; 3195ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3196d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 31977adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 31987fff6886SHong Zhang 3199d5f3da31SBarry Smith mat->factortype = matin->factortype; 3200273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32010ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32027fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32037fff6886SHong Zhang 3204273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3205d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32060ac07820SSatish Balay a->bs2 = oldmat->bs2; 32070ac07820SSatish Balay a->mbs = oldmat->mbs; 32080ac07820SSatish Balay a->nbs = oldmat->nbs; 32090ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32100ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32110ac07820SSatish Balay 32121e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 32131e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3214899cda47SBarry Smith 32150ac07820SSatish Balay a->size = oldmat->size; 32160ac07820SSatish Balay a->rank = oldmat->rank; 3217aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3218aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3219aef5e8e0SSatish Balay a->rowindices = 0; 32200ac07820SSatish Balay a->rowvalues = 0; 32210ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 322230793edcSSatish Balay a->barray = 0; 3223899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3224899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3225899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3226899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32270ac07820SSatish Balay 3228133cdb44SSatish Balay /* hash table stuff */ 3229133cdb44SSatish Balay a->ht = 0; 3230133cdb44SSatish Balay a->hd = 0; 3231133cdb44SSatish Balay a->ht_size = 0; 3232133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 323325fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3234133cdb44SSatish Balay a->ht_total_ct = 0; 3235133cdb44SSatish Balay a->ht_insert_ct = 0; 3236133cdb44SSatish Balay 3237580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1);CHKERRQ(ierr); 32380ac07820SSatish Balay if (oldmat->colmap) { 3239aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32400f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 324148e59246SSatish Balay #else 3242854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 32433bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3244580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 324548e59246SSatish Balay #endif 32460ac07820SSatish Balay } else a->colmap = 0; 32474beb1cfeSHong Zhang 32480ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3249785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 32503bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3251580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 32520ac07820SSatish Balay } else a->garray = 0; 32530ac07820SSatish Balay 3254ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 32550ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 32563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 32570ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 32583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 32597fff6886SHong Zhang 32602e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 32613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 32622e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 32633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3264140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 32650ac07820SSatish Balay *newmat = mat; 32663a40ed3dSBarry Smith PetscFunctionReturn(0); 32670ac07820SSatish Balay } 326857b952d6SSatish Balay 3269618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3270b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 3271b51a4376SLisandro Dalcin { 3272b51a4376SLisandro Dalcin PetscInt header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k; 3273b51a4376SLisandro Dalcin PetscInt *rowidxs,*colidxs,rs,cs,ce; 3274b51a4376SLisandro Dalcin PetscScalar *matvals; 3275b51a4376SLisandro Dalcin PetscErrorCode ierr; 3276b51a4376SLisandro Dalcin 3277b51a4376SLisandro Dalcin PetscFunctionBegin; 3278b51a4376SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 3279b51a4376SLisandro Dalcin 3280b51a4376SLisandro Dalcin /* read in matrix header */ 3281b51a4376SLisandro Dalcin ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr); 3282b51a4376SLisandro Dalcin if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 3283b51a4376SLisandro Dalcin M = header[1]; N = header[2]; nz = header[3]; 3284b51a4376SLisandro Dalcin if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M); 3285b51a4376SLisandro Dalcin if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N); 3286b51a4376SLisandro Dalcin if (nz < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3287b51a4376SLisandro Dalcin 3288b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 3289b51a4376SLisandro Dalcin ierr = MatLoad_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr); 3290618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3291618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3292618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3293b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3294b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3295b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 3296b51a4376SLisandro Dalcin ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 3297b51a4376SLisandro Dalcin ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 3298b51a4376SLisandro Dalcin 3299b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 3300b51a4376SLisandro Dalcin ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr); 3301b51a4376SLisandro Dalcin if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%D, %D) than the input matrix (%D, %D)",M,N,rows,cols); 3302b51a4376SLisandro Dalcin ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 3303b51a4376SLisandro Dalcin ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 3304b51a4376SLisandro Dalcin ierr = PetscLayoutGetRange(mat->rmap,&rs,NULL); 3305b51a4376SLisandro Dalcin ierr = PetscLayoutGetRange(mat->cmap,&cs,&ce); 3306b51a4376SLisandro Dalcin mbs = m/bs; nbs = n/bs; 3307b51a4376SLisandro Dalcin 3308b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 3309b51a4376SLisandro Dalcin ierr = PetscMalloc1(m+1,&rowidxs);CHKERRQ(ierr); 3310b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT);CHKERRQ(ierr); 3311b51a4376SLisandro Dalcin rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i]; 3312b51a4376SLisandro Dalcin ierr = MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr); 3313b51a4376SLisandro Dalcin if (sum != nz) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %D, sum-row-lengths = %D\n",nz,sum); 3314b51a4376SLisandro Dalcin 3315b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 3316b51a4376SLisandro Dalcin ierr = PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals);CHKERRQ(ierr); 3317b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr); 3318b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr); 3319b51a4376SLisandro Dalcin 3320b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3321b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3322b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3323618cc2edSLisandro Dalcin PetscBool sbaij,done; 3324b51a4376SLisandro Dalcin PetscInt *d_nnz,*o_nnz; 3325b51a4376SLisandro Dalcin 3326b51a4376SLisandro Dalcin ierr = PetscBTCreate(nbs,&bt);CHKERRQ(ierr); 3327b51a4376SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 3328b51a4376SLisandro Dalcin ierr = PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz);CHKERRQ(ierr); 3329618cc2edSLisandro Dalcin ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij);CHKERRQ(ierr); 3330b51a4376SLisandro Dalcin for (i=0; i<mbs; i++) { 3331b51a4376SLisandro Dalcin ierr = PetscBTMemzero(nbs,bt);CHKERRQ(ierr); 3332b51a4376SLisandro Dalcin ierr = PetscHSetIClear(ht);CHKERRQ(ierr); 3333618cc2edSLisandro Dalcin for (k=0; k<bs; k++) { 3334618cc2edSLisandro Dalcin PetscInt row = bs*i + k; 3335618cc2edSLisandro Dalcin for (j=rowidxs[row]; j<rowidxs[row+1]; j++) { 3336618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3337618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3338618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3339618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++; 3340b51a4376SLisandro Dalcin } else { 3341618cc2edSLisandro Dalcin ierr = PetscHSetIQueryAdd(ht,col/bs,&done);CHKERRQ(ierr); 3342b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3343b51a4376SLisandro Dalcin } 3344b51a4376SLisandro Dalcin } 3345618cc2edSLisandro Dalcin } 3346618cc2edSLisandro Dalcin } 3347618cc2edSLisandro Dalcin } 3348b51a4376SLisandro Dalcin ierr = PetscBTDestroy(&bt);CHKERRQ(ierr); 3349b51a4376SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 3350b51a4376SLisandro Dalcin ierr = MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 3351618cc2edSLisandro Dalcin ierr = MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 3352b51a4376SLisandro Dalcin ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 3353b51a4376SLisandro Dalcin } 3354b51a4376SLisandro Dalcin 3355b51a4376SLisandro Dalcin /* store matrix values */ 3356b51a4376SLisandro Dalcin for (i=0; i<m; i++) { 3357b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1]; 3358618cc2edSLisandro Dalcin ierr = (*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES);CHKERRQ(ierr); 3359b51a4376SLisandro Dalcin } 3360b51a4376SLisandro Dalcin 3361b51a4376SLisandro Dalcin ierr = PetscFree(rowidxs);CHKERRQ(ierr); 3362b51a4376SLisandro Dalcin ierr = PetscFree2(colidxs,matvals);CHKERRQ(ierr); 3363b51a4376SLisandro Dalcin ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3364b51a4376SLisandro Dalcin ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3365b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3366b51a4376SLisandro Dalcin } 3367b51a4376SLisandro Dalcin 3368b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer) 33694683f7a4SShri Abhyankar { 33704683f7a4SShri Abhyankar PetscErrorCode ierr; 33717f489da9SVaclav Hapla PetscBool isbinary; 33724683f7a4SShri Abhyankar 33734683f7a4SShri Abhyankar PetscFunctionBegin; 33747f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 3375b51a4376SLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 3376b51a4376SLisandro Dalcin ierr = MatLoad_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 33774683f7a4SShri Abhyankar PetscFunctionReturn(0); 33784683f7a4SShri Abhyankar } 33794683f7a4SShri Abhyankar 3380133cdb44SSatish Balay /*@ 3381133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3382133cdb44SSatish Balay 3383133cdb44SSatish Balay Input Parameters: 3384a2b725a8SWilliam Gropp + mat - the matrix 3385a2b725a8SWilliam Gropp - fact - factor 3386133cdb44SSatish Balay 3387c5eb9154SBarry Smith Not Collective, each process can use a different factor 3388fee21e36SBarry Smith 33898c890885SBarry Smith Level: advanced 33908c890885SBarry Smith 3391133cdb44SSatish Balay Notes: 33928c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3393133cdb44SSatish Balay 3394133cdb44SSatish Balay .seealso: MatSetOption() 3395133cdb44SSatish Balay @*/ 33967087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3397133cdb44SSatish Balay { 33984ac538c5SBarry Smith PetscErrorCode ierr; 33995bf65638SKris Buschelman 34005bf65638SKris Buschelman PetscFunctionBegin; 34014ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 34025bf65638SKris Buschelman PetscFunctionReturn(0); 34035bf65638SKris Buschelman } 34045bf65638SKris Buschelman 34057087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 34065bf65638SKris Buschelman { 340725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3408133cdb44SSatish Balay 3409133cdb44SSatish Balay PetscFunctionBegin; 3410133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3411133cdb44SSatish Balay baij->ht_fact = fact; 3412133cdb44SSatish Balay PetscFunctionReturn(0); 3413133cdb44SSatish Balay } 3414f2a5309cSSatish Balay 34159230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3416f2a5309cSSatish Balay { 3417f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 3418ab4d48faSStefano Zampini PetscBool flg; 3419ab4d48faSStefano Zampini PetscErrorCode ierr; 34205fd66863SKarl Rupp 3421f2a5309cSSatish Balay PetscFunctionBegin; 3422ab4d48faSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg);CHKERRQ(ierr); 3423ab4d48faSStefano Zampini if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input"); 342421e72a00SBarry Smith if (Ad) *Ad = a->A; 342521e72a00SBarry Smith if (Ao) *Ao = a->B; 342621e72a00SBarry Smith if (colmap) *colmap = a->garray; 3427f2a5309cSSatish Balay PetscFunctionReturn(0); 3428f2a5309cSSatish Balay } 342985535b8eSBarry Smith 343085535b8eSBarry Smith /* 343185535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 343285535b8eSBarry Smith */ 343385535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 343485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 343585535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 343685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 343785535b8eSBarry Smith #endif 343885535b8eSBarry Smith 343985535b8eSBarry Smith /*@C 344085535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 344185535b8eSBarry Smith 344285535b8eSBarry Smith Collective on Mat 344385535b8eSBarry Smith 344485535b8eSBarry Smith Input Parameters: 344585535b8eSBarry Smith + mat - the matrix 344685535b8eSBarry Smith . min - number of input rows 344785535b8eSBarry Smith . im - input rows 344885535b8eSBarry Smith . nin - number of input columns 344985535b8eSBarry Smith . in - input columns 345085535b8eSBarry Smith . v - numerical values input 345185535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 345285535b8eSBarry Smith 345395452b02SPatrick Sanan Notes: 345495452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 345585535b8eSBarry Smith 345685535b8eSBarry Smith Level: advanced 345785535b8eSBarry Smith 345885535b8eSBarry Smith .seealso: MatSetValuesBlocked() 345985535b8eSBarry Smith @*/ 346085535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 346185535b8eSBarry Smith { 346285535b8eSBarry Smith /* convert input arguments to C version */ 346385535b8eSBarry Smith Mat mat = *matin; 346485535b8eSBarry Smith PetscInt m = *min, n = *nin; 346585535b8eSBarry Smith InsertMode addv = *addvin; 346685535b8eSBarry Smith 346785535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 346885535b8eSBarry Smith const MatScalar *value; 346985535b8eSBarry Smith MatScalar *barray = baij->barray; 3470ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 347185535b8eSBarry Smith PetscErrorCode ierr; 347285535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 347385535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3474d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 347585535b8eSBarry Smith 347685535b8eSBarry Smith PetscFunctionBegin; 347785535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 347826fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 347976bd3646SJed Brown else if (PetscUnlikely(mat->insertmode != addv)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 348076bd3646SJed Brown if (PetscUnlikely(mat->factortype)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 348185535b8eSBarry Smith if (mat->assembled) { 348285535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 348385535b8eSBarry Smith mat->assembled = PETSC_FALSE; 348485535b8eSBarry Smith } 348585535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 348685535b8eSBarry Smith 348785535b8eSBarry Smith 348885535b8eSBarry Smith if (!barray) { 3489785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 349085535b8eSBarry Smith baij->barray = barray; 349185535b8eSBarry Smith } 349285535b8eSBarry Smith 349326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 349426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 349526fbe8dcSKarl Rupp 349685535b8eSBarry Smith for (i=0; i<m; i++) { 349785535b8eSBarry Smith if (im[i] < 0) continue; 3498*cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 349985535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 350085535b8eSBarry Smith row = im[i] - rstart; 350185535b8eSBarry Smith for (j=0; j<n; j++) { 350285535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 350385535b8eSBarry Smith if ((roworiented) && (n == 1)) { 350485535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 350585535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 350685535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 350785535b8eSBarry Smith } else { /* Here a copy is required */ 350885535b8eSBarry Smith if (roworiented) { 350985535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 351085535b8eSBarry Smith } else { 351185535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 351285535b8eSBarry Smith } 351385535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 351485535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 351585535b8eSBarry Smith *barray++ = *value++; 351685535b8eSBarry Smith } 351785535b8eSBarry Smith } 351885535b8eSBarry Smith barray -=bs2; 351985535b8eSBarry Smith } 352085535b8eSBarry Smith 352185535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 352285535b8eSBarry Smith col = in[j] - cstart; 35238ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 352426fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3525*cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 352685535b8eSBarry Smith else { 352785535b8eSBarry Smith if (mat->was_assembled) { 352885535b8eSBarry Smith if (!baij->colmap) { 3529ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 353085535b8eSBarry Smith } 353185535b8eSBarry Smith 353285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 353385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 353485535b8eSBarry Smith { PetscInt data; 353585535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3536e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 353785535b8eSBarry Smith } 353885535b8eSBarry Smith #else 3539e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 354085535b8eSBarry Smith #endif 354185535b8eSBarry Smith #endif 354285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 354385535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 354485535b8eSBarry Smith col = (col - 1)/bs; 354585535b8eSBarry Smith #else 354685535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 354785535b8eSBarry Smith #endif 354885535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3549ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 355085535b8eSBarry Smith col = in[j]; 355185535b8eSBarry Smith } 355226fbe8dcSKarl Rupp } else col = in[j]; 35538ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 355485535b8eSBarry Smith } 355585535b8eSBarry Smith } 355685535b8eSBarry Smith } else { 355785535b8eSBarry Smith if (!baij->donotstash) { 355885535b8eSBarry Smith if (roworiented) { 355985535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 356085535b8eSBarry Smith } else { 356185535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 356285535b8eSBarry Smith } 356385535b8eSBarry Smith } 356485535b8eSBarry Smith } 356585535b8eSBarry Smith } 356685535b8eSBarry Smith 356785535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 356885535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 356985535b8eSBarry Smith PetscFunctionReturn(0); 357085535b8eSBarry Smith } 3571dfb205c3SBarry Smith 3572dfb205c3SBarry Smith /*@ 3573483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3574dfb205c3SBarry Smith CSR format the local rows. 3575dfb205c3SBarry Smith 3576d083f849SBarry Smith Collective 3577dfb205c3SBarry Smith 3578dfb205c3SBarry Smith Input Parameters: 3579dfb205c3SBarry Smith + comm - MPI communicator 3580dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3581dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3582dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3583dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3584dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3585dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3586dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3587483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3588dfb205c3SBarry Smith . j - column indices 3589dfb205c3SBarry Smith - a - matrix values 3590dfb205c3SBarry Smith 3591dfb205c3SBarry Smith Output Parameter: 3592dfb205c3SBarry Smith . mat - the matrix 3593dfb205c3SBarry Smith 3594dfb205c3SBarry Smith Level: intermediate 3595dfb205c3SBarry Smith 3596dfb205c3SBarry Smith Notes: 3597dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3598dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3599dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3600dfb205c3SBarry Smith 36013adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 36023adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 36033adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 36043adadaf3SJed Brown with column-major ordering within blocks. 36053adadaf3SJed Brown 3606dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3607dfb205c3SBarry Smith 3608dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 360969b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3610dfb205c3SBarry Smith @*/ 36117087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3612dfb205c3SBarry Smith { 3613dfb205c3SBarry Smith PetscErrorCode ierr; 3614dfb205c3SBarry Smith 3615dfb205c3SBarry Smith PetscFunctionBegin; 3616f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3617dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3618dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3619dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 36209a43d2d5SJed Brown ierr = MatSetType(*mat,MATMPIBAIJ);CHKERRQ(ierr); 362127f91139SJed Brown ierr = MatSetBlockSize(*mat,bs);CHKERRQ(ierr); 362227f91139SJed Brown ierr = MatSetUp(*mat);CHKERRQ(ierr); 3623d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3624dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3625d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3626dfb205c3SBarry Smith PetscFunctionReturn(0); 3627dfb205c3SBarry Smith } 3628e561ad89SHong Zhang 3629bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3630e561ad89SHong Zhang { 3631e561ad89SHong Zhang PetscErrorCode ierr; 3632bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 3633bd153df0SHong Zhang PetscInt *indx; 3634bd153df0SHong Zhang PetscScalar *values; 3635e561ad89SHong Zhang 3636e561ad89SHong Zhang PetscFunctionBegin; 3637e561ad89SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 3638bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3639bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 36402c6ba4edSHong Zhang PetscInt *dnz,*onz,mbs,Nbs,nbs; 3641bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 364277f764caSHong Zhang PetscMPIInt rank,size; 3643e561ad89SHong Zhang 3644bd153df0SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3645bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 3646bd153df0SHong Zhang if (n == PETSC_DECIDE) { 3647da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 3648bd153df0SHong Zhang } 3649da91a574SPierre Jolivet nbs = n/cbs; 3650e561ad89SHong Zhang 3651647a6520SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 365277f764caSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 365377f764caSHong Zhang 365477f764caSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 365577f764caSHong Zhang ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 365677f764caSHong Zhang if (rank == size-1) { 365777f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36582c6ba4edSHong Zhang if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 365977f764caSHong Zhang } 366077f764caSHong Zhang 366177f764caSHong Zhang rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 3662bd153df0SHong Zhang for (i=0; i<mbs; i++) { 3663647a6520SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 3664647a6520SHong Zhang nnz = nnz/bs; 3665647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 3666647a6520SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 3667647a6520SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 3668e561ad89SHong Zhang } 3669647a6520SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 3670e561ad89SHong Zhang 3671e561ad89SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 367277f764caSHong Zhang ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 3673e561ad89SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 36748761c3d6SHong Zhang ierr = MatSetType(*outmat,MATBAIJ);CHKERRQ(ierr); 36758761c3d6SHong Zhang ierr = MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 3676e561ad89SHong Zhang ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 3677e561ad89SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 3678e561ad89SHong Zhang } 3679e561ad89SHong Zhang 3680bd153df0SHong Zhang /* numeric phase */ 3681647a6520SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3682bd153df0SHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 3683e561ad89SHong Zhang 3684e561ad89SHong Zhang for (i=0; i<m; i++) { 3685e561ad89SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3686e561ad89SHong Zhang Ii = i + rstart; 3687bd153df0SHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 3688e561ad89SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3689e561ad89SHong Zhang } 3690bd153df0SHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3691bd153df0SHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3692e561ad89SHong Zhang PetscFunctionReturn(0); 3693e561ad89SHong Zhang } 3694