xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision d21b9a37d4db75ff30687a836cb898da6804b0fc)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
97ea3e4caSstefano_zampini #endif
107ea3e4caSstefano_zampini 
11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
127843d17aSBarry Smith {
137843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
14dfbe8321SBarry Smith   PetscErrorCode ierr;
15985db425SBarry Smith   PetscInt       i,*idxb = 0;
1687828ca2SBarry Smith   PetscScalar    *va,*vb;
177843d17aSBarry Smith   Vec            vtmp;
187843d17aSBarry Smith 
197843d17aSBarry Smith   PetscFunctionBegin;
20985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
211ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
22985db425SBarry Smith   if (idx) {
2326fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
2426fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2526fbe8dcSKarl Rupp     }
26985db425SBarry Smith   }
277843d17aSBarry Smith 
28d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
29785e854fSJed Brown   if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);}
30985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
311ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
327843d17aSBarry Smith 
33d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
3426fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
3526fbe8dcSKarl Rupp       va[i] = vb[i];
3626fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
3726fbe8dcSKarl Rupp     }
387843d17aSBarry Smith   }
397843d17aSBarry Smith 
401ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
411ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
42c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
447843d17aSBarry Smith   PetscFunctionReturn(0);
457843d17aSBarry Smith }
467843d17aSBarry Smith 
477087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
487fc3c18eSBarry Smith {
497fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
517fc3c18eSBarry Smith 
527fc3c18eSBarry Smith   PetscFunctionBegin;
537fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
547fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
557fc3c18eSBarry Smith   PetscFunctionReturn(0);
567fc3c18eSBarry Smith }
577fc3c18eSBarry Smith 
587087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
597fc3c18eSBarry Smith {
607fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
61dfbe8321SBarry Smith   PetscErrorCode ierr;
627fc3c18eSBarry Smith 
637fc3c18eSBarry Smith   PetscFunctionBegin;
647fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
657fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
667fc3c18eSBarry Smith   PetscFunctionReturn(0);
677fc3c18eSBarry Smith }
687fc3c18eSBarry Smith 
69537820f0SBarry Smith /*
70537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
72e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7357b952d6SSatish Balay    length of colmap equals the global matrix length.
7457b952d6SSatish Balay */
75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
7657b952d6SSatish Balay {
7757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
7857b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8157b952d6SSatish Balay 
82d64ed03dSBarry Smith   PetscFunctionBegin;
83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
84e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
8548e59246SSatish Balay   for (i=0; i<nbs; i++) {
863861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
8748e59246SSatish Balay   }
8848e59246SSatish Balay #else
89580bdb30SBarry Smith   ierr = PetscCalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
903bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
91928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9248e59246SSatish Balay #endif
933a40ed3dSBarry Smith   PetscFunctionReturn(0);
9457b952d6SSatish Balay }
9557b952d6SSatish Balay 
96d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol)       \
9780c1aa95SSatish Balay   { \
9880c1aa95SSatish Balay     brow = row/bs;  \
9980c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
100ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10180c1aa95SSatish Balay     bcol = col/bs; \
10280c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
103ab26458aSBarry Smith     low  = 0; high = nrow; \
104ab26458aSBarry Smith     while (high-low > 3) { \
105ab26458aSBarry Smith       t = (low+high)/2; \
106ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
107ab26458aSBarry Smith       else              low  = t; \
108ab26458aSBarry Smith     } \
109ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11080c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11180c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11280c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
113eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
114eada6651SSatish Balay         else                    *bap  = value;  \
115ac7a638eSSatish Balay         goto a_noinsert; \
11680c1aa95SSatish Balay       } \
11780c1aa95SSatish Balay     } \
11889280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
119d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
120fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12180c1aa95SSatish Balay     N = nrow++ - 1;  \
12280c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
123580bdb30SBarry Smith     ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\
124580bdb30SBarry Smith     ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
125580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
12680c1aa95SSatish Balay     rp[_i]                      = bcol;  \
12780c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
128ac7a638eSSatish Balay a_noinsert:; \
12980c1aa95SSatish Balay     ailen[brow] = nrow; \
13080c1aa95SSatish Balay   }
13157b952d6SSatish Balay 
132d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol)       \
133ac7a638eSSatish Balay   { \
134ac7a638eSSatish Balay     brow = row/bs;  \
135ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
136ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
137ac7a638eSSatish Balay     bcol = col/bs; \
138ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
139ac7a638eSSatish Balay     low  = 0; high = nrow; \
140ac7a638eSSatish Balay     while (high-low > 3) { \
141ac7a638eSSatish Balay       t = (low+high)/2; \
142ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
143ac7a638eSSatish Balay       else              low  = t; \
144ac7a638eSSatish Balay     } \
145ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
146ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
147ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
148ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
149ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
150ac7a638eSSatish Balay         else                    *bap  = value;  \
151ac7a638eSSatish Balay         goto b_noinsert; \
152ac7a638eSSatish Balay       } \
153ac7a638eSSatish Balay     } \
15489280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
155d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column  (%D, %D) into matrix", orow, ocol); \
156fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
157ac7a638eSSatish Balay     N = nrow++ - 1;  \
158ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
159580bdb30SBarry Smith     ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\
160580bdb30SBarry Smith     ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr);\
161580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
162ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
163ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
164ac7a638eSSatish Balay b_noinsert:; \
165ac7a638eSSatish Balay     bilen[brow] = nrow; \
166ac7a638eSSatish Balay   }
167ac7a638eSSatish Balay 
168b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
16957b952d6SSatish Balay {
17057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
17193fea6afSBarry Smith   MatScalar      value;
172ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
173dfbe8321SBarry Smith   PetscErrorCode ierr;
174b24ad042SBarry Smith   PetscInt       i,j,row,col;
175d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
176d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
177d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
17857b952d6SSatish Balay 
179eada6651SSatish Balay   /* Some Variables required in the macro */
18080c1aa95SSatish Balay   Mat         A     = baij->A;
18180c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
182b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1833eda8832SBarry Smith   MatScalar   *aa   =a->a;
184ac7a638eSSatish Balay 
185ac7a638eSSatish Balay   Mat         B     = baij->B;
186ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
187b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
1883eda8832SBarry Smith   MatScalar   *ba   =b->a;
189ac7a638eSSatish Balay 
190b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
191b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
1923eda8832SBarry Smith   MatScalar *ap,*bap;
19380c1aa95SSatish Balay 
194d64ed03dSBarry Smith   PetscFunctionBegin;
19557b952d6SSatish Balay   for (i=0; i<m; i++) {
1965ef9f2a5SBarry Smith     if (im[i] < 0) continue;
1972515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
198e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
199639f9d9dSBarry Smith #endif
20057b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
20157b952d6SSatish Balay       row = im[i] - rstart_orig;
20257b952d6SSatish Balay       for (j=0; j<n; j++) {
20357b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
20457b952d6SSatish Balay           col = in[j] - cstart_orig;
205db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
206db4deed7SKarl Rupp           else             value = v[i+j*m];
207d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
20873959e64SBarry Smith         } else if (in[j] < 0) continue;
2092515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
210660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
211639f9d9dSBarry Smith #endif
21257b952d6SSatish Balay         else {
21357b952d6SSatish Balay           if (mat->was_assembled) {
214905e6a2fSBarry Smith             if (!baij->colmap) {
215ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
216905e6a2fSBarry Smith             }
217aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2180f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
219bba1ac68SSatish Balay             col  = col - 1;
22048e59246SSatish Balay #else
221bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
22248e59246SSatish Balay #endif
223c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
224ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2258295de27SSatish Balay               col  =  in[j];
2269bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2279bf004c3SSatish Balay               B    = baij->B;
2289bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2299bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2309bf004c3SSatish Balay               ba   =b->a;
231c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
232c9ef50b2SBarry Smith             else col += in[j]%bs;
2338295de27SSatish Balay           } else col = in[j];
234db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
235db4deed7SKarl Rupp           else             value = v[i+j*m];
236d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
23790da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23857b952d6SSatish Balay         }
23957b952d6SSatish Balay       }
240d64ed03dSBarry Smith     } else {
2414cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
24290f02eecSBarry Smith       if (!baij->donotstash) {
2435080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
244ff2fd236SBarry Smith         if (roworiented) {
245b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
246ff2fd236SBarry Smith         } else {
247b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
24857b952d6SSatish Balay         }
24957b952d6SSatish Balay       }
25057b952d6SSatish Balay     }
25190f02eecSBarry Smith   }
2523a40ed3dSBarry Smith   PetscFunctionReturn(0);
25357b952d6SSatish Balay }
25457b952d6SSatish Balay 
2558ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
256880c6e6aSBarry Smith {
257880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
2588ab52850SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
259880c6e6aSBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
260880c6e6aSBarry Smith   PetscErrorCode    ierr;
2618ab52850SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
262880c6e6aSBarry Smith   PetscBool         roworiented=a->roworiented;
263880c6e6aSBarry Smith   const PetscScalar *value     = v;
264880c6e6aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
265880c6e6aSBarry Smith 
266880c6e6aSBarry Smith   PetscFunctionBegin;
267880c6e6aSBarry Smith   rp   = aj + ai[row];
268880c6e6aSBarry Smith   ap   = aa + bs2*ai[row];
269880c6e6aSBarry Smith   rmax = imax[row];
270880c6e6aSBarry Smith   nrow = ailen[row];
2718ab52850SBarry Smith   value = v;
2728ab52850SBarry Smith   low = 0;
2738ab52850SBarry Smith   high = nrow;
274880c6e6aSBarry Smith   while (high-low > 7) {
275880c6e6aSBarry Smith     t = (low+high)/2;
276880c6e6aSBarry Smith     if (rp[t] > col) high = t;
277880c6e6aSBarry Smith     else             low  = t;
278880c6e6aSBarry Smith   }
279880c6e6aSBarry Smith   for (i=low; i<high; i++) {
280880c6e6aSBarry Smith     if (rp[i] > col) break;
281880c6e6aSBarry Smith     if (rp[i] == col) {
282880c6e6aSBarry Smith       bap = ap +  bs2*i;
283880c6e6aSBarry Smith       if (roworiented) {
284880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2858ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
286880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
287880c6e6aSBarry Smith               bap[jj] += *value++;
288880c6e6aSBarry Smith             }
289880c6e6aSBarry Smith           }
290880c6e6aSBarry Smith         } else {
2918ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
292880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
293880c6e6aSBarry Smith               bap[jj] = *value++;
294880c6e6aSBarry Smith             }
295880c6e6aSBarry Smith           }
296880c6e6aSBarry Smith         }
297880c6e6aSBarry Smith       } else {
298880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2998ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
300880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
301880c6e6aSBarry Smith               bap[jj] += value[jj];
302880c6e6aSBarry Smith             }
303880c6e6aSBarry Smith             bap += bs;
304880c6e6aSBarry Smith           }
305880c6e6aSBarry Smith         } else {
3068ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
307880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
308880c6e6aSBarry Smith               bap[jj]  = value[jj];
309880c6e6aSBarry Smith             }
310880c6e6aSBarry Smith             bap += bs;
311880c6e6aSBarry Smith           }
312880c6e6aSBarry Smith         }
313880c6e6aSBarry Smith       }
314880c6e6aSBarry Smith       goto noinsert2;
315880c6e6aSBarry Smith     }
316880c6e6aSBarry Smith   }
317880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
318880c6e6aSBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
319880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
320880c6e6aSBarry Smith   N = nrow++ - 1; high++;
321880c6e6aSBarry Smith   /* shift up all the later entries in this row */
322580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
323580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
324880c6e6aSBarry Smith   rp[i] = col;
325880c6e6aSBarry Smith   bap   = ap +  bs2*i;
326880c6e6aSBarry Smith   if (roworiented) {
3278ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
328880c6e6aSBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
329880c6e6aSBarry Smith         bap[jj] = *value++;
330880c6e6aSBarry Smith       }
331880c6e6aSBarry Smith     }
332880c6e6aSBarry Smith   } else {
3338ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
334880c6e6aSBarry Smith       for (jj=0; jj<bs; jj++) {
335880c6e6aSBarry Smith         *bap++ = *value++;
336880c6e6aSBarry Smith       }
337880c6e6aSBarry Smith     }
338880c6e6aSBarry Smith   }
339880c6e6aSBarry Smith   noinsert2:;
340880c6e6aSBarry Smith   ailen[row] = nrow;
341880c6e6aSBarry Smith   PetscFunctionReturn(0);
342880c6e6aSBarry Smith }
343880c6e6aSBarry Smith 
3448ab52850SBarry Smith /*
3458ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3468ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3478ab52850SBarry Smith */
34897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
349ab26458aSBarry Smith {
350ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
351dd6ea824SBarry Smith   const PetscScalar *value;
352f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
353ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
354dfbe8321SBarry Smith   PetscErrorCode    ierr;
355899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
356899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
357d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
358ab26458aSBarry Smith 
359b16ae2b1SBarry Smith   PetscFunctionBegin;
36030793edcSSatish Balay   if (!barray) {
361785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
36282502324SSatish Balay     baij->barray = barray;
36330793edcSSatish Balay   }
36430793edcSSatish Balay 
36526fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
36626fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
36726fbe8dcSKarl Rupp 
368ab26458aSBarry Smith   for (i=0; i<m; i++) {
3695ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
371bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
372ab26458aSBarry Smith #endif
373ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
374ab26458aSBarry Smith       row = im[i] - rstart;
375ab26458aSBarry Smith       for (j=0; j<n; j++) {
37615b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
37715b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
378f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
37915b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
380f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
38115b57d14SSatish Balay         } else { /* Here a copy is required */
382ab26458aSBarry Smith           if (roworiented) {
38353ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
384ab26458aSBarry Smith           } else {
38553ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
386abef11f7SSatish Balay           }
38753ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
38826fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
38953ef36baSBarry Smith             barray += bs;
39047513183SBarry Smith           }
39130793edcSSatish Balay           barray -= bs2;
39215b57d14SSatish Balay         }
393abef11f7SSatish Balay 
394abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
395abef11f7SSatish Balay           col  = in[j] - cstart;
3968ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
39726fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3982515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3998ab52850SBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
400ab26458aSBarry Smith #endif
401ab26458aSBarry Smith         else {
402ab26458aSBarry Smith           if (mat->was_assembled) {
403ab26458aSBarry Smith             if (!baij->colmap) {
404ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
405ab26458aSBarry Smith             }
406a5eb4965SSatish Balay 
4072515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
408aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
409b24ad042SBarry Smith             { PetscInt data;
4100f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
411e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
412fa46199cSSatish Balay             }
41348e59246SSatish Balay #else
414e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
415a5eb4965SSatish Balay #endif
41648e59246SSatish Balay #endif
417aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4180f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
419fa46199cSSatish Balay             col  = (col - 1)/bs;
42048e59246SSatish Balay #else
421a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
42248e59246SSatish Balay #endif
4230e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
424ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
425ab26458aSBarry Smith               col  =  in[j];
426bb003d0fSBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]);
427db4deed7SKarl Rupp           } else col = in[j];
4288ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
429ab26458aSBarry Smith         }
430ab26458aSBarry Smith       }
431d64ed03dSBarry Smith     } else {
432bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
433ab26458aSBarry Smith       if (!baij->donotstash) {
434ff2fd236SBarry Smith         if (roworiented) {
4356fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
436ff2fd236SBarry Smith         } else {
4376fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
438ff2fd236SBarry Smith         }
439abef11f7SSatish Balay       }
440ab26458aSBarry Smith     }
441ab26458aSBarry Smith   }
4423a40ed3dSBarry Smith   PetscFunctionReturn(0);
443ab26458aSBarry Smith }
4446fa18ffdSBarry Smith 
4450bdbc534SSatish Balay #define HASH_KEY 0.6180339887
446b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
447b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
448b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
44997e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4500bdbc534SSatish Balay {
4510bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
452ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
453dfbe8321SBarry Smith   PetscErrorCode ierr;
454b24ad042SBarry Smith   PetscInt       i,j,row,col;
455d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
456d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
457d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
458329f5518SBarry Smith   PetscReal      tmp;
4593eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
4602515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
461b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4624a15367fSSatish Balay #endif
4630bdbc534SSatish Balay 
4640bdbc534SSatish Balay   PetscFunctionBegin;
4650bdbc534SSatish Balay   for (i=0; i<m; i++) {
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
468e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4690bdbc534SSatish Balay #endif
4700bdbc534SSatish Balay     row = im[i];
471c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4720bdbc534SSatish Balay       for (j=0; j<n; j++) {
4730bdbc534SSatish Balay         col = in[j];
474db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
475db4deed7SKarl Rupp         else             value = v[i+j*m];
476b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
477c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
478c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4790bdbc534SSatish Balay 
480c2760754SSatish Balay 
481c2760754SSatish Balay         idx = h1;
4822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
483187ce0cbSSatish Balay         insert_ct++;
484187ce0cbSSatish Balay         total_ct++;
485187ce0cbSSatish Balay         if (HT[idx] != key) {
486187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
487187ce0cbSSatish Balay           if (idx == size) {
488187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
489f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
490187ce0cbSSatish Balay           }
491187ce0cbSSatish Balay         }
492187ce0cbSSatish Balay #else
493c2760754SSatish Balay         if (HT[idx] != key) {
494c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
495c2760754SSatish Balay           if (idx == size) {
496c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
497f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
498c2760754SSatish Balay           }
499c2760754SSatish Balay         }
500187ce0cbSSatish Balay #endif
501c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
502c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
503c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5040bdbc534SSatish Balay       }
50526fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
506ff2fd236SBarry Smith       if (roworiented) {
507b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
508ff2fd236SBarry Smith       } else {
509b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
5100bdbc534SSatish Balay       }
5110bdbc534SSatish Balay     }
5120bdbc534SSatish Balay   }
5132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
514abf3b562SBarry Smith   baij->ht_total_ct  += total_ct;
515abf3b562SBarry Smith   baij->ht_insert_ct += insert_ct;
516187ce0cbSSatish Balay #endif
5170bdbc534SSatish Balay   PetscFunctionReturn(0);
5180bdbc534SSatish Balay }
5190bdbc534SSatish Balay 
52097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
5210bdbc534SSatish Balay {
5220bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
523ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
524dfbe8321SBarry Smith   PetscErrorCode    ierr;
525b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
526899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
527d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
528b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
529329f5518SBarry Smith   PetscReal         tmp;
5303eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
531dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
5322515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
533b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5344a15367fSSatish Balay #endif
5350bdbc534SSatish Balay 
536d0a41580SSatish Balay   PetscFunctionBegin;
53726fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
53826fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
53926fbe8dcSKarl Rupp 
5400bdbc534SSatish Balay   for (i=0; i<m; i++) {
5412515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
542e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
543e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
5440bdbc534SSatish Balay #endif
5450bdbc534SSatish Balay     row = im[i];
546ab715e2cSSatish Balay     v_t = v + i*nbs2;
547c2760754SSatish Balay     if (row >= rstart && row < rend) {
5480bdbc534SSatish Balay       for (j=0; j<n; j++) {
5490bdbc534SSatish Balay         col = in[j];
5500bdbc534SSatish Balay 
5510bdbc534SSatish Balay         /* Look up into the Hash Table */
552c2760754SSatish Balay         key = row*Nbs+col+1;
553c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5540bdbc534SSatish Balay 
555c2760754SSatish Balay         idx = h1;
5562515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
557187ce0cbSSatish Balay         total_ct++;
558187ce0cbSSatish Balay         insert_ct++;
559187ce0cbSSatish Balay         if (HT[idx] != key) {
560187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
561187ce0cbSSatish Balay           if (idx == size) {
562187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
563f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
564187ce0cbSSatish Balay           }
565187ce0cbSSatish Balay         }
566187ce0cbSSatish Balay #else
567c2760754SSatish Balay         if (HT[idx] != key) {
568c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
569c2760754SSatish Balay           if (idx == size) {
570c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
571f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
572c2760754SSatish Balay           }
573c2760754SSatish Balay         }
574187ce0cbSSatish Balay #endif
575c2760754SSatish Balay         baij_a = HD[idx];
5760bdbc534SSatish Balay         if (roworiented) {
577c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
578187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
579187ce0cbSSatish Balay           value = v_t;
580187ce0cbSSatish Balay           v_t  += bs;
581fef45726SSatish Balay           if (addv == ADD_VALUES) {
582c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
583c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
584fef45726SSatish Balay                 baij_a[jj] += *value++;
585b4cc0f5aSSatish Balay               }
586b4cc0f5aSSatish Balay             }
587fef45726SSatish Balay           } else {
588c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
589c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
590fef45726SSatish Balay                 baij_a[jj] = *value++;
591fef45726SSatish Balay               }
592fef45726SSatish Balay             }
593fef45726SSatish Balay           }
5940bdbc534SSatish Balay         } else {
5950bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
596fef45726SSatish Balay           if (addv == ADD_VALUES) {
597b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5980bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
599fef45726SSatish Balay                 baij_a[jj] += *value++;
600fef45726SSatish Balay               }
601fef45726SSatish Balay             }
602fef45726SSatish Balay           } else {
603fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
604fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
605fef45726SSatish Balay                 baij_a[jj] = *value++;
606fef45726SSatish Balay               }
607b4cc0f5aSSatish Balay             }
6080bdbc534SSatish Balay           }
6090bdbc534SSatish Balay         }
6100bdbc534SSatish Balay       }
6110bdbc534SSatish Balay     } else {
6120bdbc534SSatish Balay       if (!baij->donotstash) {
6130bdbc534SSatish Balay         if (roworiented) {
6148798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6150bdbc534SSatish Balay         } else {
6168798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6170bdbc534SSatish Balay         }
6180bdbc534SSatish Balay       }
6190bdbc534SSatish Balay     }
6200bdbc534SSatish Balay   }
6212515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
622abf3b562SBarry Smith   baij->ht_total_ct  += total_ct;
623abf3b562SBarry Smith   baij->ht_insert_ct += insert_ct;
624187ce0cbSSatish Balay #endif
6250bdbc534SSatish Balay   PetscFunctionReturn(0);
6260bdbc534SSatish Balay }
627133cdb44SSatish Balay 
628b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
629d6de1c52SSatish Balay {
630d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6316849ba73SBarry Smith   PetscErrorCode ierr;
632d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
633d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
634d6de1c52SSatish Balay 
635133cdb44SSatish Balay   PetscFunctionBegin;
636d6de1c52SSatish Balay   for (i=0; i<m; i++) {
637e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
638e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
639d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
640d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
641d6de1c52SSatish Balay       for (j=0; j<n; j++) {
642e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
643e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
644d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
645d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
64698dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647d64ed03dSBarry Smith         } else {
648905e6a2fSBarry Smith           if (!baij->colmap) {
649ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
650905e6a2fSBarry Smith           }
651aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6520f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
653fa46199cSSatish Balay           data--;
65448e59246SSatish Balay #else
65548e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
65648e59246SSatish Balay #endif
65748e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
658d9d09a02SSatish Balay           else {
65948e59246SSatish Balay             col  = data + idxn[j]%bs;
66098dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
661d6de1c52SSatish Balay           }
662d6de1c52SSatish Balay         }
663d6de1c52SSatish Balay       }
664f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
665d6de1c52SSatish Balay   }
6663a40ed3dSBarry Smith   PetscFunctionReturn(0);
667d6de1c52SSatish Balay }
668d6de1c52SSatish Balay 
669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
670d6de1c52SSatish Balay {
671d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
672d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
673dfbe8321SBarry Smith   PetscErrorCode ierr;
674d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
675329f5518SBarry Smith   PetscReal      sum = 0.0;
6763eda8832SBarry Smith   MatScalar      *v;
677d6de1c52SSatish Balay 
678d64ed03dSBarry Smith   PetscFunctionBegin;
679d6de1c52SSatish Balay   if (baij->size == 1) {
680064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
681d6de1c52SSatish Balay   } else {
682d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
683d6de1c52SSatish Balay       v  = amat->a;
6848a62d963SHong Zhang       nz = amat->nz*bs2;
6858a62d963SHong Zhang       for (i=0; i<nz; i++) {
686329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
687d6de1c52SSatish Balay       }
688d6de1c52SSatish Balay       v  = bmat->a;
6898a62d963SHong Zhang       nz = bmat->nz*bs2;
6908a62d963SHong Zhang       for (i=0; i<nz; i++) {
691329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
692d6de1c52SSatish Balay       }
693b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6948f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6958a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6968a62d963SHong Zhang       PetscReal *tmp,*tmp2;
697899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
6988f8f2f0dSBarry Smith       ierr = PetscCalloc1(mat->cmap->N,&tmp);CHKERRQ(ierr);
699857a15f1SBarry Smith       ierr = PetscMalloc1(mat->cmap->N,&tmp2);CHKERRQ(ierr);
7008a62d963SHong Zhang       v    = amat->a; jj = amat->j;
7018a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7028a62d963SHong Zhang         for (j=0; j<bs; j++) {
7038a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7048a62d963SHong Zhang           for (row=0; row<bs; row++) {
7058a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7068a62d963SHong Zhang           }
7078a62d963SHong Zhang         }
7088a62d963SHong Zhang         jj++;
7098a62d963SHong Zhang       }
7108a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7118a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7128a62d963SHong Zhang         for (j=0; j<bs; j++) {
7138a62d963SHong Zhang           col = bs*garray[*jj] + j;
7148a62d963SHong Zhang           for (row=0; row<bs; row++) {
7158a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7168a62d963SHong Zhang           }
7178a62d963SHong Zhang         }
7188a62d963SHong Zhang         jj++;
7198a62d963SHong Zhang       }
720b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7218a62d963SHong Zhang       *nrm = 0.0;
722d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
7238a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7248a62d963SHong Zhang       }
725857a15f1SBarry Smith       ierr = PetscFree(tmp);CHKERRQ(ierr);
726857a15f1SBarry Smith       ierr = PetscFree(tmp2);CHKERRQ(ierr);
7278a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
728577dd1f9SKris Buschelman       PetscReal *sums;
729785e854fSJed Brown       ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr);
7308a62d963SHong Zhang       sum  = 0.0;
7318a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
7328a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
7338a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
7348a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
7358a62d963SHong Zhang         for (i=0; i<nz; i++) {
7368a62d963SHong Zhang           for (col=0; col<bs; col++) {
7378a62d963SHong Zhang             for (row=0; row<bs; row++) {
7388a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7398a62d963SHong Zhang             }
7408a62d963SHong Zhang           }
7418a62d963SHong Zhang         }
7428a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
7438a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7448a62d963SHong Zhang         for (i=0; i<nz; i++) {
7458a62d963SHong Zhang           for (col=0; col<bs; col++) {
7468a62d963SHong Zhang             for (row=0; row<bs; row++) {
7478a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7488a62d963SHong Zhang             }
7498a62d963SHong Zhang           }
7508a62d963SHong Zhang         }
7518a62d963SHong Zhang         for (row=0; row<bs; row++) {
7528a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7538a62d963SHong Zhang         }
7548a62d963SHong Zhang       }
755b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
756577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
757ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
758d64ed03dSBarry Smith   }
7593a40ed3dSBarry Smith   PetscFunctionReturn(0);
760d6de1c52SSatish Balay }
76157b952d6SSatish Balay 
762fef45726SSatish Balay /*
763fef45726SSatish Balay   Creates the hash table, and sets the table
764fef45726SSatish Balay   This table is created only once.
765fef45726SSatish Balay   If new entried need to be added to the matrix
766fef45726SSatish Balay   then the hash table has to be destroyed and
767fef45726SSatish Balay   recreated.
768fef45726SSatish Balay */
769dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
770596b8d2eSBarry Smith {
771596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
772596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
773596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
774b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7756849ba73SBarry Smith   PetscErrorCode ierr;
776fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
777899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
778b24ad042SBarry Smith   PetscInt       *HT,key;
7793eda8832SBarry Smith   MatScalar      **HD;
780329f5518SBarry Smith   PetscReal      tmp;
7816cf91177SBarry Smith #if defined(PETSC_USE_INFO)
782b24ad042SBarry Smith   PetscInt ct=0,max=0;
7834a15367fSSatish Balay #endif
784fef45726SSatish Balay 
785d64ed03dSBarry Smith   PetscFunctionBegin;
786fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
787fef45726SSatish Balay 
788fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
789fca92195SBarry Smith   ht_size       = baij->ht_size;
7900bdbc534SSatish Balay 
791fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7921795a4d1SJed Brown   ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
793b9e4cc15SSatish Balay   HD   = baij->hd;
794a07cd24cSSatish Balay   HT   = baij->ht;
795b9e4cc15SSatish Balay 
796596b8d2eSBarry Smith   /* Loop Over A */
7970bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
798596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7990bdbc534SSatish Balay       row = i+rstart;
8000bdbc534SSatish Balay       col = aj[j]+cstart;
801596b8d2eSBarry Smith 
802187ce0cbSSatish Balay       key = row*Nbs + col + 1;
803fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
804fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
805fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
806fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
807fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
808596b8d2eSBarry Smith           break;
8096cf91177SBarry Smith #if defined(PETSC_USE_INFO)
810187ce0cbSSatish Balay         } else {
811187ce0cbSSatish Balay           ct++;
812187ce0cbSSatish Balay #endif
813596b8d2eSBarry Smith         }
814187ce0cbSSatish Balay       }
8156cf91177SBarry Smith #if defined(PETSC_USE_INFO)
816187ce0cbSSatish Balay       if (k> max) max = k;
817187ce0cbSSatish Balay #endif
818596b8d2eSBarry Smith     }
819596b8d2eSBarry Smith   }
820596b8d2eSBarry Smith   /* Loop Over B */
8210bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
822596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
8230bdbc534SSatish Balay       row = i+rstart;
8240bdbc534SSatish Balay       col = garray[bj[j]];
825187ce0cbSSatish Balay       key = row*Nbs + col + 1;
826fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
827fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
828fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
829fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
830fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
831596b8d2eSBarry Smith           break;
8326cf91177SBarry Smith #if defined(PETSC_USE_INFO)
833187ce0cbSSatish Balay         } else {
834187ce0cbSSatish Balay           ct++;
835187ce0cbSSatish Balay #endif
836596b8d2eSBarry Smith         }
837187ce0cbSSatish Balay       }
8386cf91177SBarry Smith #if defined(PETSC_USE_INFO)
839187ce0cbSSatish Balay       if (k> max) max = k;
840187ce0cbSSatish Balay #endif
841596b8d2eSBarry Smith     }
842596b8d2eSBarry Smith   }
843596b8d2eSBarry Smith 
844596b8d2eSBarry Smith   /* Print Summary */
8456cf91177SBarry Smith #if defined(PETSC_USE_INFO)
846fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
84726fbe8dcSKarl Rupp     if (HT[i]) j++;
848c38d4ed2SBarry Smith   }
8491e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
850187ce0cbSSatish Balay #endif
8513a40ed3dSBarry Smith   PetscFunctionReturn(0);
852596b8d2eSBarry Smith }
85357b952d6SSatish Balay 
854dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
855bbb85fb3SSatish Balay {
856bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
857dfbe8321SBarry Smith   PetscErrorCode ierr;
858b24ad042SBarry Smith   PetscInt       nstash,reallocs;
859bbb85fb3SSatish Balay 
860bbb85fb3SSatish Balay   PetscFunctionBegin;
86126fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
862bbb85fb3SSatish Balay 
863d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8641e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8658798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8661e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
86746680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8681e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
869bbb85fb3SSatish Balay   PetscFunctionReturn(0);
870bbb85fb3SSatish Balay }
871bbb85fb3SSatish Balay 
872dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
873bbb85fb3SSatish Balay {
874bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
87591c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
8766849ba73SBarry Smith   PetscErrorCode ierr;
877b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
878e44c0bd4SBarry Smith   PetscInt       *row,*col;
879ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8803eda8832SBarry Smith   MatScalar      *val;
881b24ad042SBarry Smith   PetscMPIInt    n;
882bbb85fb3SSatish Balay 
883bbb85fb3SSatish Balay   PetscFunctionBegin;
8845fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8854cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
886a2d1c673SSatish Balay     while (1) {
8878798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
888a2d1c673SSatish Balay       if (!flg) break;
889a2d1c673SSatish Balay 
890bbb85fb3SSatish Balay       for (i=0; i<n;) {
891bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
89226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
89326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
89426fbe8dcSKarl Rupp         }
895bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
896bbb85fb3SSatish Balay         else       ncols = n-i;
897bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
8984b4eb8d3SJed Brown         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
899bbb85fb3SSatish Balay         i    = j;
900bbb85fb3SSatish Balay       }
901bbb85fb3SSatish Balay     }
9028798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
903a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
904a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
905a2d1c673SSatish Balay        restore the original flags */
906a2d1c673SSatish Balay     r1 = baij->roworiented;
907a2d1c673SSatish Balay     r2 = a->roworiented;
90891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
90926fbe8dcSKarl Rupp 
9107c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
9117c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
91226fbe8dcSKarl Rupp 
91391c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
914a2d1c673SSatish Balay     while (1) {
9158798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
916a2d1c673SSatish Balay       if (!flg) break;
917a2d1c673SSatish Balay 
918a2d1c673SSatish Balay       for (i=0; i<n;) {
919a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92026fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
92126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92226fbe8dcSKarl Rupp         }
923a2d1c673SSatish Balay         if (j < n) ncols = j-i;
924a2d1c673SSatish Balay         else       ncols = n-i;
9254b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
926a2d1c673SSatish Balay         i    = j;
927a2d1c673SSatish Balay       }
928a2d1c673SSatish Balay     }
9298798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
93026fbe8dcSKarl Rupp 
931a2d1c673SSatish Balay     baij->roworiented = r1;
932a2d1c673SSatish Balay     a->roworiented    = r2;
93326fbe8dcSKarl Rupp 
93491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
935bbb85fb3SSatish Balay   }
936bbb85fb3SSatish Balay 
937bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
938bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
939bbb85fb3SSatish Balay 
940bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
941bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
942bbb85fb3SSatish Balay   /*
943bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
944bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
945bbb85fb3SSatish Balay   */
946bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
947b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
948bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
949ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
950bbb85fb3SSatish Balay     }
951bbb85fb3SSatish Balay   }
952bbb85fb3SSatish Balay 
953bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
954bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
955bbb85fb3SSatish Balay   }
956bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
957bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
958bbb85fb3SSatish Balay 
9596cf91177SBarry Smith #if defined(PETSC_USE_INFO)
960bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
961abf3b562SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
96226fbe8dcSKarl Rupp 
963bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
964bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
965bbb85fb3SSatish Balay   }
966bbb85fb3SSatish Balay #endif
967bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
968bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
96926fbe8dcSKarl Rupp 
970bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
971bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
972bbb85fb3SSatish Balay   }
973bbb85fb3SSatish Balay 
974fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
97526fbe8dcSKarl Rupp 
976606d414cSSatish Balay   baij->rowvalues = 0;
9774f9cfa9eSBarry Smith 
9784f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9794f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
980e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
981b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
982e56f5c9eSBarry Smith   }
983bbb85fb3SSatish Balay   PetscFunctionReturn(0);
984bbb85fb3SSatish Balay }
98557b952d6SSatish Balay 
9867da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9879804daf3SBarry Smith #include <petscdraw.h>
9886849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
98957b952d6SSatish Balay {
99057b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
991dfbe8321SBarry Smith   PetscErrorCode    ierr;
9927da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
993d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
994ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
995b0a32e0cSBarry Smith   PetscViewer       sviewer;
996f3ef73ceSBarry Smith   PetscViewerFormat format;
99757b952d6SSatish Balay 
998d64ed03dSBarry Smith   PetscFunctionBegin;
999251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1000251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
100132077d6dSBarry Smith   if (iascii) {
1002b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1003456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10044e220ebcSLois Curfman McInnes       MatInfo info;
1005ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1006d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
10071575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
1008b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",
1009b1e9c6f1SBarry Smith                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
1010d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
1011e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1012d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
1013e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1014b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
10151575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
101607d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
101757b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
10183a40ed3dSBarry Smith       PetscFunctionReturn(0);
1019fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
102077431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
10213a40ed3dSBarry Smith       PetscFunctionReturn(0);
102204929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
102304929863SHong Zhang       PetscFunctionReturn(0);
102457b952d6SSatish Balay     }
102557b952d6SSatish Balay   }
102657b952d6SSatish Balay 
10270f5bd95cSBarry Smith   if (isdraw) {
1028b0a32e0cSBarry Smith     PetscDraw draw;
1029ace3abfcSBarry Smith     PetscBool isnull;
1030b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
103145f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
103245f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
103357b952d6SSatish Balay   }
103457b952d6SSatish Balay 
10357da1fb6eSBarry Smith   {
103657b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
103757b952d6SSatish Balay     Mat         A;
103857b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1039d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10403eda8832SBarry Smith     MatScalar   *a;
10413e219373SBarry Smith     const char  *matname;
104257b952d6SSatish Balay 
1043f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1044f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1045ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
104657b952d6SSatish Balay     if (!rank) {
1047f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1048d64ed03dSBarry Smith     } else {
1049f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
105057b952d6SSatish Balay     }
1051f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
10520298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
10532b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
10543bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
105557b952d6SSatish Balay 
105657b952d6SSatish Balay     /* copy over the A part */
105757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
105857b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1059785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
106057b952d6SSatish Balay 
106157b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1062899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
106326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
106457b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1065899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
106657b952d6SSatish Balay         for (k=0; k<bs; k++) {
106797e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1068cee3aa6bSSatish Balay           col++; a += bs;
106957b952d6SSatish Balay         }
107057b952d6SSatish Balay       }
107157b952d6SSatish Balay     }
107257b952d6SSatish Balay     /* copy over the B part */
107357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
107457b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
107557b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1076899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
107726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
107857b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
107957b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
108057b952d6SSatish Balay         for (k=0; k<bs; k++) {
108197e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1082cee3aa6bSSatish Balay           col++; a += bs;
108357b952d6SSatish Balay         }
108457b952d6SSatish Balay       }
108557b952d6SSatish Balay     }
1086606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10876d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10886d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
108955843e3eSBarry Smith     /*
109055843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1091b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
109255843e3eSBarry Smith     */
10933f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
1094ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
10953e219373SBarry Smith     if (!rank) {
1096ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
10977da1fb6eSBarry Smith       ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
109857b952d6SSatish Balay     }
10993f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
11001575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
11016bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
110257b952d6SSatish Balay   }
11033a40ed3dSBarry Smith   PetscFunctionReturn(0);
110457b952d6SSatish Balay }
110557b952d6SSatish Balay 
1106618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1107b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1108660746e0SBarry Smith {
1109b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
1110b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A   = (Mat_SeqBAIJ*)aij->A->data;
1111b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B   = (Mat_SeqBAIJ*)aij->B->data;
1112b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
1113b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l;
1114b51a4376SLisandro Dalcin   PetscInt       *rowlens,*colidxs;
1115b51a4376SLisandro Dalcin   PetscScalar    *matvals;
1116660746e0SBarry Smith   PetscErrorCode ierr;
1117660746e0SBarry Smith 
1118660746e0SBarry Smith   PetscFunctionBegin;
1119b51a4376SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1120b51a4376SLisandro Dalcin 
1121b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1122b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1123b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1124b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1125b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1126b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1127b51a4376SLisandro Dalcin   nz = bs*bs*(A->nz + B->nz);
1128b51a4376SLisandro Dalcin 
1129b51a4376SLisandro Dalcin   /* write matrix header */
1130660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
1131b51a4376SLisandro Dalcin   header[1] = M; header[2] = N; header[3] = nz;
1132ce94432eSBarry Smith   ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1133b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);
1134660746e0SBarry Smith 
1135b51a4376SLisandro Dalcin   /* fill in and store row lengths */
1136b51a4376SLisandro Dalcin   ierr = PetscMalloc1(m,&rowlens);CHKERRQ(ierr);
1137b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1138b51a4376SLisandro Dalcin     for (j=0; j<bs; j++)
1139b51a4376SLisandro Dalcin       rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]);
1140b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT);CHKERRQ(ierr);
1141b51a4376SLisandro Dalcin   ierr = PetscFree(rowlens);CHKERRQ(ierr);
1142660746e0SBarry Smith 
1143b51a4376SLisandro Dalcin   /* fill in and store column indices */
1144b51a4376SLisandro Dalcin   ierr = PetscMalloc1(nz,&colidxs);CHKERRQ(ierr);
1145b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1146b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1147b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1148b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1149b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1150b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1151660746e0SBarry Smith       }
1152b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1153b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1154b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*A->j[ja] + l + cs;
1155b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1156b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1157b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1158660746e0SBarry Smith     }
1159660746e0SBarry Smith   }
1160660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1161b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT);CHKERRQ(ierr);
1162b51a4376SLisandro Dalcin   ierr = PetscFree(colidxs);CHKERRQ(ierr);
1163660746e0SBarry Smith 
1164b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
1165b51a4376SLisandro Dalcin   ierr = PetscMalloc1(nz,&matvals);CHKERRQ(ierr);
1166b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1167b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1168b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1169b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1170b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1171b51a4376SLisandro Dalcin           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1172660746e0SBarry Smith       }
1173b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1174b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1175b51a4376SLisandro Dalcin           matvals[cnt++] = A->a[bs*(bs*ja + l) + k];
1176b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1177b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1178*d21b9a37SPierre Jolivet           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1179660746e0SBarry Smith     }
1180b51a4376SLisandro Dalcin   }
1181b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR);CHKERRQ(ierr);
1182b51a4376SLisandro Dalcin   ierr = PetscFree(matvals);CHKERRQ(ierr);
1183660746e0SBarry Smith 
1184b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
1185b51a4376SLisandro Dalcin   ierr = MatView_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr);
1186660746e0SBarry Smith   PetscFunctionReturn(0);
1187660746e0SBarry Smith }
1188660746e0SBarry Smith 
1189dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
119057b952d6SSatish Balay {
1191dfbe8321SBarry Smith   PetscErrorCode ierr;
1192ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
119357b952d6SSatish Balay 
1194d64ed03dSBarry Smith   PetscFunctionBegin;
1195251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1196251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1197251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1198251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1199660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12007b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1201660746e0SBarry Smith   } else if (isbinary) {
1202660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
120357b952d6SSatish Balay   }
12043a40ed3dSBarry Smith   PetscFunctionReturn(0);
120557b952d6SSatish Balay }
120657b952d6SSatish Balay 
1207dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
120879bdfe76SSatish Balay {
120979bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1210dfbe8321SBarry Smith   PetscErrorCode ierr;
121179bdfe76SSatish Balay 
1212d64ed03dSBarry Smith   PetscFunctionBegin;
1213aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1214d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
121579bdfe76SSatish Balay #endif
12168798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12178798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12186bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12196bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1220aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
12216bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
122248e59246SSatish Balay #else
122305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
122448e59246SSatish Balay #endif
122505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12266bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12276bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1228fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
122905b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1230fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1231899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1232bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1233901853e0SKris Buschelman 
1234dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1235bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1236bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1237bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1238bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1239bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1240bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1241bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1242bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
12437ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
12447ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr);
12457ea3e4caSstefano_zampini #endif
1246c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL);CHKERRQ(ierr);
12473a40ed3dSBarry Smith   PetscFunctionReturn(0);
124879bdfe76SSatish Balay }
124979bdfe76SSatish Balay 
1250dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1251cee3aa6bSSatish Balay {
1252cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1253dfbe8321SBarry Smith   PetscErrorCode ierr;
1254b24ad042SBarry Smith   PetscInt       nt;
1255cee3aa6bSSatish Balay 
1256d64ed03dSBarry Smith   PetscFunctionBegin;
1257e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1258e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1259e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1260e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1261ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1262f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1263ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1264f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
12653a40ed3dSBarry Smith   PetscFunctionReturn(0);
1266cee3aa6bSSatish Balay }
1267cee3aa6bSSatish Balay 
1268dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1269cee3aa6bSSatish Balay {
1270cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1271dfbe8321SBarry Smith   PetscErrorCode ierr;
1272d64ed03dSBarry Smith 
1273d64ed03dSBarry Smith   PetscFunctionBegin;
1274ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1275f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1276ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1277f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12783a40ed3dSBarry Smith   PetscFunctionReturn(0);
1279cee3aa6bSSatish Balay }
1280cee3aa6bSSatish Balay 
1281dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1282cee3aa6bSSatish Balay {
1283cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1284dfbe8321SBarry Smith   PetscErrorCode ierr;
1285cee3aa6bSSatish Balay 
1286d64ed03dSBarry Smith   PetscFunctionBegin;
1287cee3aa6bSSatish Balay   /* do nondiagonal part */
12887c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1289cee3aa6bSSatish Balay   /* do local part */
12907c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1291e4a140f6SJunchao Zhang   /* add partial results together */
1292ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1293ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12943a40ed3dSBarry Smith   PetscFunctionReturn(0);
1295cee3aa6bSSatish Balay }
1296cee3aa6bSSatish Balay 
1297dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1298cee3aa6bSSatish Balay {
1299cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1300dfbe8321SBarry Smith   PetscErrorCode ierr;
1301cee3aa6bSSatish Balay 
1302d64ed03dSBarry Smith   PetscFunctionBegin;
1303cee3aa6bSSatish Balay   /* do nondiagonal part */
13047c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1305cee3aa6bSSatish Balay   /* do local part */
13067c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1307e4a140f6SJunchao Zhang   /* add partial results together */
1308e4a140f6SJunchao Zhang   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1309ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13103a40ed3dSBarry Smith   PetscFunctionReturn(0);
1311cee3aa6bSSatish Balay }
1312cee3aa6bSSatish Balay 
1313cee3aa6bSSatish Balay /*
1314cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1315cee3aa6bSSatish Balay    diagonal block
1316cee3aa6bSSatish Balay */
1317dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1318cee3aa6bSSatish Balay {
1319cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1320dfbe8321SBarry Smith   PetscErrorCode ierr;
1321d64ed03dSBarry Smith 
1322d64ed03dSBarry Smith   PetscFunctionBegin;
1323e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13243a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13253a40ed3dSBarry Smith   PetscFunctionReturn(0);
1326cee3aa6bSSatish Balay }
1327cee3aa6bSSatish Balay 
1328f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1329cee3aa6bSSatish Balay {
1330cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1331dfbe8321SBarry Smith   PetscErrorCode ierr;
1332d64ed03dSBarry Smith 
1333d64ed03dSBarry Smith   PetscFunctionBegin;
1334f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1335f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
13363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1337cee3aa6bSSatish Balay }
1338026e39d0SSatish Balay 
1339b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1340acdf5bf4SSatish Balay {
1341acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
134287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
13436849ba73SBarry Smith   PetscErrorCode ierr;
1344d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1345d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1346899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1347acdf5bf4SSatish Balay 
1348d64ed03dSBarry Smith   PetscFunctionBegin;
1349e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1350e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1351acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1352acdf5bf4SSatish Balay 
1353acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1354acdf5bf4SSatish Balay     /*
1355acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1356acdf5bf4SSatish Balay     */
1357acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1358b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1359bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1360acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
136126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1362acdf5bf4SSatish Balay     }
1363dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1364acdf5bf4SSatish Balay   }
1365d9d09a02SSatish Balay   lrow = row - brstart;
1366acdf5bf4SSatish Balay 
1367acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1368acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1369acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1370f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1371f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1372acdf5bf4SSatish Balay   nztot = nzA + nzB;
1373acdf5bf4SSatish Balay 
1374acdf5bf4SSatish Balay   cmap = mat->garray;
1375acdf5bf4SSatish Balay   if (v  || idx) {
1376acdf5bf4SSatish Balay     if (nztot) {
1377acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1378b24ad042SBarry Smith       PetscInt imark = -1;
1379acdf5bf4SSatish Balay       if (v) {
1380acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1381acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1382d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1383acdf5bf4SSatish Balay           else break;
1384acdf5bf4SSatish Balay         }
1385acdf5bf4SSatish Balay         imark = i;
1386acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1387acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1388acdf5bf4SSatish Balay       }
1389acdf5bf4SSatish Balay       if (idx) {
1390acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1391acdf5bf4SSatish Balay         if (imark > -1) {
1392acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1393bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1394acdf5bf4SSatish Balay           }
1395acdf5bf4SSatish Balay         } else {
1396acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
139726fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1398acdf5bf4SSatish Balay             else break;
1399acdf5bf4SSatish Balay           }
1400acdf5bf4SSatish Balay           imark = i;
1401acdf5bf4SSatish Balay         }
1402d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1403d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1404acdf5bf4SSatish Balay       }
1405d64ed03dSBarry Smith     } else {
1406d212a18eSSatish Balay       if (idx) *idx = 0;
1407d212a18eSSatish Balay       if (v)   *v   = 0;
1408d212a18eSSatish Balay     }
1409acdf5bf4SSatish Balay   }
1410acdf5bf4SSatish Balay   *nz  = nztot;
1411f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1412f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14133a40ed3dSBarry Smith   PetscFunctionReturn(0);
1414acdf5bf4SSatish Balay }
1415acdf5bf4SSatish Balay 
1416b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1417acdf5bf4SSatish Balay {
1418acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1419d64ed03dSBarry Smith 
1420d64ed03dSBarry Smith   PetscFunctionBegin;
1421e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1422acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14233a40ed3dSBarry Smith   PetscFunctionReturn(0);
1424acdf5bf4SSatish Balay }
1425acdf5bf4SSatish Balay 
1426dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
142758667388SSatish Balay {
142858667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1429dfbe8321SBarry Smith   PetscErrorCode ierr;
1430d64ed03dSBarry Smith 
1431d64ed03dSBarry Smith   PetscFunctionBegin;
143258667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
143358667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14343a40ed3dSBarry Smith   PetscFunctionReturn(0);
143558667388SSatish Balay }
14360ac07820SSatish Balay 
1437dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14380ac07820SSatish Balay {
14394e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14404e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1441dfbe8321SBarry Smith   PetscErrorCode ierr;
14423966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
14430ac07820SSatish Balay 
1444d64ed03dSBarry Smith   PetscFunctionBegin;
1445d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
144626fbe8dcSKarl Rupp 
14474e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
144826fbe8dcSKarl Rupp 
14490e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1450de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
145126fbe8dcSKarl Rupp 
14524e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
145326fbe8dcSKarl Rupp 
14540e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1455de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
145626fbe8dcSKarl Rupp 
14570ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14584e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14594e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14604e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14614e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14624e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14630ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14643966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
146526fbe8dcSKarl Rupp 
14664e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14674e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14684e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14694e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14704e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14710ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14723966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
147326fbe8dcSKarl Rupp 
14744e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14754e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14764e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14774e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14784e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1479ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14804e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14814e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14824e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14833a40ed3dSBarry Smith   PetscFunctionReturn(0);
14840ac07820SSatish Balay }
14850ac07820SSatish Balay 
1486ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
148758667388SSatish Balay {
148858667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1489dfbe8321SBarry Smith   PetscErrorCode ierr;
149058667388SSatish Balay 
1491d64ed03dSBarry Smith   PetscFunctionBegin;
149212c028f9SKris Buschelman   switch (op) {
1493512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
149412c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
149528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1496a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
149712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
149843674050SBarry Smith     MatCheckPreallocated(A,1);
14994e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15004e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
150112c028f9SKris Buschelman     break;
150212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
150343674050SBarry Smith     MatCheckPreallocated(A,1);
15044e0d8c25SBarry Smith     a->roworiented = flg;
150526fbe8dcSKarl Rupp 
15064e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15074e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
150812c028f9SKris Buschelman     break;
15094e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1510071fcb05SBarry Smith   case MAT_SORTED_FULL:
1511290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
151212c028f9SKris Buschelman     break;
151312c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15144e0d8c25SBarry Smith     a->donotstash = flg;
151512c028f9SKris Buschelman     break;
151612c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15174e0d8c25SBarry Smith     a->ht_flag = flg;
1518abf3b562SBarry Smith     a->ht_fact = 1.39;
151912c028f9SKris Buschelman     break;
152077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
152177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15222188ac68SBarry Smith   case MAT_HERMITIAN:
1523c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15242188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
152543674050SBarry Smith     MatCheckPreallocated(A,1);
15264e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
152777e54ba9SKris Buschelman     break;
152812c028f9SKris Buschelman   default:
1529ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1530d64ed03dSBarry Smith   }
15313a40ed3dSBarry Smith   PetscFunctionReturn(0);
153258667388SSatish Balay }
153358667388SSatish Balay 
1534fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
15350ac07820SSatish Balay {
15360ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
15370ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
15380ac07820SSatish Balay   Mat            B;
1539dfbe8321SBarry Smith   PetscErrorCode ierr;
1540d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1541d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
15423eda8832SBarry Smith   MatScalar      *a;
15430ac07820SSatish Balay 
1544d64ed03dSBarry Smith   PetscFunctionBegin;
1545cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
1546ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1547d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
15487adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
15492e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15500298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1551fc4dec0aSBarry Smith   } else {
1552fc4dec0aSBarry Smith     B = *matout;
1553fc4dec0aSBarry Smith   }
15540ac07820SSatish Balay 
15550ac07820SSatish Balay   /* copy over the A part */
15560ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
15570ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1558785e854fSJed Brown   ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
15590ac07820SSatish Balay 
15600ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1561899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
156226fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15630ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1564899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
15650ac07820SSatish Balay       for (k=0; k<bs; k++) {
156697e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
156726fbe8dcSKarl Rupp 
15680ac07820SSatish Balay         col++; a += bs;
15690ac07820SSatish Balay       }
15700ac07820SSatish Balay     }
15710ac07820SSatish Balay   }
15720ac07820SSatish Balay   /* copy over the B part */
15730ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15740ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
15750ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1576899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
157726fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15780ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15790ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15800ac07820SSatish Balay       for (k=0; k<bs; k++) {
158197e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
158226fbe8dcSKarl Rupp         col++;
158326fbe8dcSKarl Rupp         a += bs;
15840ac07820SSatish Balay       }
15850ac07820SSatish Balay     }
15860ac07820SSatish Balay   }
1587606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15880ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15890ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15900ac07820SSatish Balay 
1591cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
159226fbe8dcSKarl Rupp   else {
159328be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
15940ac07820SSatish Balay   }
15953a40ed3dSBarry Smith   PetscFunctionReturn(0);
15960ac07820SSatish Balay }
15970e95ebc0SSatish Balay 
1598dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15990e95ebc0SSatish Balay {
160036c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
160136c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1602dfbe8321SBarry Smith   PetscErrorCode ierr;
1603b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16040e95ebc0SSatish Balay 
1605d64ed03dSBarry Smith   PetscFunctionBegin;
160636c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
160736c4a09eSSatish Balay   if (rr) {
160836c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1609e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
161036c4a09eSSatish Balay     /* Overlap communication with computation. */
1611ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
161236c4a09eSSatish Balay   }
16130e95ebc0SSatish Balay   if (ll) {
16140e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1615e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
16160298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16170e95ebc0SSatish Balay   }
161836c4a09eSSatish Balay   /* scale  the diagonal block */
161936c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
162036c4a09eSSatish Balay 
162136c4a09eSSatish Balay   if (rr) {
162236c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1623ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16240298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
162536c4a09eSSatish Balay   }
16263a40ed3dSBarry Smith   PetscFunctionReturn(0);
16270e95ebc0SSatish Balay }
16280e95ebc0SSatish Balay 
16292b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16300ac07820SSatish Balay {
16310ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
163265a92638SMatthew G. Knepley   PetscInt      *lrows;
16336e520ac8SStefano Zampini   PetscInt       r, len;
163494342113SStefano Zampini   PetscBool      cong;
16356849ba73SBarry Smith   PetscErrorCode ierr;
16360ac07820SSatish Balay 
1637d64ed03dSBarry Smith   PetscFunctionBegin;
16386e520ac8SStefano Zampini   /* get locally owned rows */
16396e520ac8SStefano Zampini   ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr);
164097b48c8fSBarry Smith   /* fix right hand side if needed */
164197b48c8fSBarry Smith   if (x && b) {
164265a92638SMatthew G. Knepley     const PetscScalar *xx;
164365a92638SMatthew G. Knepley     PetscScalar       *bb;
164465a92638SMatthew G. Knepley 
164597b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
164697b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
164765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
164897b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
164997b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
165097b48c8fSBarry Smith   }
165197b48c8fSBarry Smith 
16520ac07820SSatish Balay   /* actually zap the local rows */
165372dacd9aSBarry Smith   /*
165472dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1655a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
165672dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
165772dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
165872dacd9aSBarry Smith 
165972dacd9aSBarry Smith   */
16609c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1661a34163a4SJed Brown   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
166294342113SStefano Zampini   ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr);
166394342113SStefano Zampini   if ((diag != 0.0) && cong) {
1664a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr);
1665f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
166665a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1667e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1668512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
166965a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
167065a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1671f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1672a07cd24cSSatish Balay     }
1673a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1674a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16759c957beeSSatish Balay   } else {
1676a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1677a07cd24cSSatish Balay   }
1678606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
16794f9cfa9eSBarry Smith 
16804f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16814f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1682e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1683b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1684e56f5c9eSBarry Smith   }
16853a40ed3dSBarry Smith   PetscFunctionReturn(0);
16860ac07820SSatish Balay }
168772dacd9aSBarry Smith 
16886f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16896f0a72daSMatthew G. Knepley {
16906f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
16916f0a72daSMatthew G. Knepley   PetscErrorCode    ierr;
1692131c27b5Sprj-   PetscMPIInt       n = A->rmap->n,p = 0;
1693131c27b5Sprj-   PetscInt          i,j,k,r,len = 0,row,col,count;
16946f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
16956f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16966f0a72daSMatthew G. Knepley   PetscSF           sf;
16976f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16986f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
16996f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
17006f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
17016f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
17026f0a72daSMatthew G. Knepley   PetscScalar       *aa;
17036f0a72daSMatthew G. Knepley 
17046f0a72daSMatthew G. Knepley   PetscFunctionBegin;
17056f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
17066f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
17076f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
17086f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);
17096f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
17106f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
17115ba17502SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
17125ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
17135ba17502SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
17145ba17502SJed Brown     }
17156f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
17166f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
17176f0a72daSMatthew G. Knepley   }
17186f0a72daSMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
17196f0a72daSMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
17206f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17216f0a72daSMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
17226f0a72daSMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
17236f0a72daSMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
17246f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17256f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
17266f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17276f0a72daSMatthew G. Knepley   ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr);
17286f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
17292a7a6963SBarry Smith   ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr);
17306f0a72daSMatthew G. Knepley   ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr);
17316f0a72daSMatthew G. Knepley   ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr);
17326f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
17336f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr);
17346f0a72daSMatthew G. Knepley   ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17356f0a72daSMatthew G. Knepley   ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17366f0a72daSMatthew G. Knepley   ierr = VecDestroy(&xmask);CHKERRQ(ierr);
17376f0a72daSMatthew G. Knepley   if (x) {
17386f0a72daSMatthew G. Knepley     ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17396f0a72daSMatthew G. Knepley     ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17406f0a72daSMatthew G. Knepley     ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr);
17416f0a72daSMatthew G. Knepley     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
17426f0a72daSMatthew G. Knepley   }
17436f0a72daSMatthew G. Knepley   ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr);
17446f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17456f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17466f0a72daSMatthew G. Knepley     row   = lrows[i];
17476f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
17486f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
17496f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17506f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17516f0a72daSMatthew G. Knepley       aa   += bs;
17526f0a72daSMatthew G. Knepley     }
17536f0a72daSMatthew G. Knepley   }
17546f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17556f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17566f0a72daSMatthew G. Knepley     row = i/bs;
17576f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
17586f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17596f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
17606f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17616f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
176289ae1891SBarry Smith           if (x) bb[i] -= aa[0]*xx[col];
17636f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17646f0a72daSMatthew G. Knepley         }
17656f0a72daSMatthew G. Knepley       }
17666f0a72daSMatthew G. Knepley     }
17676f0a72daSMatthew G. Knepley   }
17686f0a72daSMatthew G. Knepley   if (x) {
17696f0a72daSMatthew G. Knepley     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
17706f0a72daSMatthew G. Knepley     ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr);
17716f0a72daSMatthew G. Knepley   }
17726f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr);
17736f0a72daSMatthew G. Knepley   ierr = VecDestroy(&lmask);CHKERRQ(ierr);
17746f0a72daSMatthew G. Knepley   ierr = PetscFree(lrows);CHKERRQ(ierr);
17754f9cfa9eSBarry Smith 
17764f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17774f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
17784f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1779b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17804f9cfa9eSBarry Smith   }
17816f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
17826f0a72daSMatthew G. Knepley }
17836f0a72daSMatthew G. Knepley 
1784dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1785bb5a7306SBarry Smith {
1786bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1787dfbe8321SBarry Smith   PetscErrorCode ierr;
1788d64ed03dSBarry Smith 
1789d64ed03dSBarry Smith   PetscFunctionBegin;
1790bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1792bb5a7306SBarry Smith }
1793bb5a7306SBarry Smith 
17946849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
17950ac07820SSatish Balay 
1796ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
17977fc3c18eSBarry Smith {
17987fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17997fc3c18eSBarry Smith   Mat            a,b,c,d;
1800ace3abfcSBarry Smith   PetscBool      flg;
1801dfbe8321SBarry Smith   PetscErrorCode ierr;
18027fc3c18eSBarry Smith 
18037fc3c18eSBarry Smith   PetscFunctionBegin;
18047fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18057fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18067fc3c18eSBarry Smith 
18077fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1808abc0a331SBarry Smith   if (flg) {
18097fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18107fc3c18eSBarry Smith   }
1811b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
18127fc3c18eSBarry Smith   PetscFunctionReturn(0);
18137fc3c18eSBarry Smith }
18147fc3c18eSBarry Smith 
18153c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18163c896bc6SHong Zhang {
18173c896bc6SHong Zhang   PetscErrorCode ierr;
18183c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
18193c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
18203c896bc6SHong Zhang 
18213c896bc6SHong Zhang   PetscFunctionBegin;
18223c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18233c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18243c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18253c896bc6SHong Zhang   } else {
18263c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18273c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18283c896bc6SHong Zhang   }
1829cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18303c896bc6SHong Zhang   PetscFunctionReturn(0);
18313c896bc6SHong Zhang }
1832273d9f13SBarry Smith 
18334994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1834273d9f13SBarry Smith {
1835dfbe8321SBarry Smith   PetscErrorCode ierr;
1836273d9f13SBarry Smith 
1837273d9f13SBarry Smith   PetscFunctionBegin;
1838535b19f3SBarry Smith   ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1839273d9f13SBarry Smith   PetscFunctionReturn(0);
1840273d9f13SBarry Smith }
1841273d9f13SBarry Smith 
18424de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
18434de5dceeSHong Zhang {
1844001ddc4fSHong Zhang   PetscErrorCode ierr;
1845001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
18464de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
18474de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
18484de5dceeSHong Zhang 
18494de5dceeSHong Zhang   PetscFunctionBegin;
1850001ddc4fSHong Zhang   ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr);
18514de5dceeSHong Zhang   PetscFunctionReturn(0);
18524de5dceeSHong Zhang }
18534de5dceeSHong Zhang 
18544fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18554fe895cdSHong Zhang {
18564fe895cdSHong Zhang   PetscErrorCode ierr;
18574fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
18584fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18594fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
1860b31f67cfSBarry Smith   PetscInt       bs2 = Y->rmap->bs*Y->rmap->bs;
18614fe895cdSHong Zhang 
18624fe895cdSHong Zhang   PetscFunctionBegin;
18634fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18644fe895cdSHong Zhang     PetscScalar alpha = a;
18654fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
18664fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
1867b31f67cfSBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
18688b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18694fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
18704fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
1871b31f67cfSBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
18728b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
1873a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1874ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1875ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
18764fe895cdSHong Zhang   } else {
18774de5dceeSHong Zhang     Mat      B;
18784de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18794de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
18804de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
18814de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
18824de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
18834de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
18844de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
18854de5dceeSHong Zhang     ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr);
18864de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
18874de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
18884de5dceeSHong Zhang     ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
18894de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18904de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
189128be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
18924de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
18934de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
18944fe895cdSHong Zhang   }
18954fe895cdSHong Zhang   PetscFunctionReturn(0);
18964fe895cdSHong Zhang }
18974fe895cdSHong Zhang 
189899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
189999cafbc1SBarry Smith {
190099cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
190199cafbc1SBarry Smith   PetscErrorCode ierr;
190299cafbc1SBarry Smith 
190399cafbc1SBarry Smith   PetscFunctionBegin;
190499cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
190599cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
190699cafbc1SBarry Smith   PetscFunctionReturn(0);
190799cafbc1SBarry Smith }
190899cafbc1SBarry Smith 
190999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
191099cafbc1SBarry Smith {
191199cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
191299cafbc1SBarry Smith   PetscErrorCode ierr;
191399cafbc1SBarry Smith 
191499cafbc1SBarry Smith   PetscFunctionBegin;
191599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
191699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
191799cafbc1SBarry Smith   PetscFunctionReturn(0);
191899cafbc1SBarry Smith }
191999cafbc1SBarry Smith 
19207dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
19214aa3045dSJed Brown {
19224aa3045dSJed Brown   PetscErrorCode ierr;
19234aa3045dSJed Brown   IS             iscol_local;
19244aa3045dSJed Brown   PetscInt       csize;
19254aa3045dSJed Brown 
19264aa3045dSJed Brown   PetscFunctionBegin;
19274aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1928b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1929b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1930e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1931b79d0421SJed Brown   } else {
19324aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1933b79d0421SJed Brown   }
19347dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1935b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1936b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
19376bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
1938b79d0421SJed Brown   }
19394aa3045dSJed Brown   PetscFunctionReturn(0);
19404aa3045dSJed Brown }
194117df9f7cSHong Zhang 
194282094794SBarry Smith /*
194382094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
194482094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19457dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19468f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
194782094794SBarry Smith */
19487dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
194982094794SBarry Smith {
195082094794SBarry Smith   PetscErrorCode ierr;
195182094794SBarry Smith   PetscMPIInt    rank,size;
195282094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
1953c9ffca76SHong Zhang   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
195429dcf524SDmitry Karpeev   Mat            M,Mreuse;
195582094794SBarry Smith   MatScalar      *vwork,*aa;
1956ce94432eSBarry Smith   MPI_Comm       comm;
195729dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
195882094794SBarry Smith   Mat_SeqBAIJ    *aij;
195982094794SBarry Smith 
196082094794SBarry Smith   PetscFunctionBegin;
1961ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
196282094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
196382094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
196429dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
196529dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
196629dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
196729dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
196882094794SBarry Smith 
196982094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
197082094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
1971e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
19727dae84e0SHong Zhang     ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse);CHKERRQ(ierr);
197382094794SBarry Smith   } else {
19747dae84e0SHong Zhang     ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse);CHKERRQ(ierr);
197582094794SBarry Smith   }
197629dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
197729dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
197882094794SBarry Smith   /*
197982094794SBarry Smith       m - number of local rows
198082094794SBarry Smith       n - number of columns (same on all processors)
198182094794SBarry Smith       rstart - first row in new global matrix generated
198282094794SBarry Smith   */
198382094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
198482094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
198582094794SBarry Smith   m    = m/bs;
198682094794SBarry Smith   n    = n/bs;
198782094794SBarry Smith 
198882094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
198982094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
199082094794SBarry Smith     ii  = aij->i;
199182094794SBarry Smith     jj  = aij->j;
199282094794SBarry Smith 
199382094794SBarry Smith     /*
199482094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
199582094794SBarry Smith         portions of the matrix in order to do correct preallocation
199682094794SBarry Smith     */
199782094794SBarry Smith 
199882094794SBarry Smith     /* first get start and end of "diagonal" columns */
199982094794SBarry Smith     if (csize == PETSC_DECIDE) {
200082094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
200182094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
200282094794SBarry Smith         nlocal = m;
200382094794SBarry Smith       } else {
200482094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
200582094794SBarry Smith       }
200682094794SBarry Smith     } else {
200782094794SBarry Smith       nlocal = csize/bs;
200882094794SBarry Smith     }
200982094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
201082094794SBarry Smith     rstart = rend - nlocal;
201165e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
201282094794SBarry Smith 
201382094794SBarry Smith     /* next, compute all the lengths */
2014dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
201582094794SBarry Smith     for (i=0; i<m; i++) {
201682094794SBarry Smith       jend = ii[i+1] - ii[i];
201782094794SBarry Smith       olen = 0;
201882094794SBarry Smith       dlen = 0;
201982094794SBarry Smith       for (j=0; j<jend; j++) {
202082094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
202182094794SBarry Smith         else dlen++;
202282094794SBarry Smith         jj++;
202382094794SBarry Smith       }
202482094794SBarry Smith       olens[i] = olen;
202582094794SBarry Smith       dlens[i] = dlen;
202682094794SBarry Smith     }
202782094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
202882094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
202982094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
203082094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
20318f46ffcaSHong Zhang     ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2032eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
203382094794SBarry Smith   } else {
203482094794SBarry Smith     PetscInt ml,nl;
203582094794SBarry Smith 
203682094794SBarry Smith     M    = *newmat;
203782094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2038e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
203982094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
204082094794SBarry Smith     /*
204182094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
204282094794SBarry Smith        rather than the slower MatSetValues().
204382094794SBarry Smith     */
204482094794SBarry Smith     M->was_assembled = PETSC_TRUE;
204582094794SBarry Smith     M->assembled     = PETSC_FALSE;
204682094794SBarry Smith   }
204782094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
204882094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
204982094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
205082094794SBarry Smith   ii   = aij->i;
205182094794SBarry Smith   jj   = aij->j;
205282094794SBarry Smith   aa   = aij->a;
205382094794SBarry Smith   for (i=0; i<m; i++) {
205482094794SBarry Smith     row   = rstart/bs + i;
205582094794SBarry Smith     nz    = ii[i+1] - ii[i];
205682094794SBarry Smith     cwork = jj;     jj += nz;
205775f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
205882094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
205982094794SBarry Smith   }
206082094794SBarry Smith 
206182094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
206282094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
206382094794SBarry Smith   *newmat = M;
206482094794SBarry Smith 
206582094794SBarry Smith   /* save submatrix used in processor for next request */
206682094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
206782094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
206882094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
206982094794SBarry Smith   }
207082094794SBarry Smith   PetscFunctionReturn(0);
207182094794SBarry Smith }
207282094794SBarry Smith 
207382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
207482094794SBarry Smith {
207582094794SBarry Smith   MPI_Comm       comm,pcomm;
2076a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
207782094794SBarry Smith   const PetscInt *rows;
2078dbf0e21dSBarry Smith   PetscMPIInt    size;
2079a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
208082094794SBarry Smith   PetscErrorCode ierr;
208182094794SBarry Smith 
208282094794SBarry Smith   PetscFunctionBegin;
208382094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
208482094794SBarry Smith   /* make a collective version of 'rowp' */
208582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
208682094794SBarry Smith   if (pcomm==comm) {
208782094794SBarry Smith     crowp = rowp;
208882094794SBarry Smith   } else {
208982094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
209082094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
209170b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
209282094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
209382094794SBarry Smith   }
2094a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2095a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
209682094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2097dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2098dbf0e21dSBarry Smith   if (size==1) {
209982094794SBarry Smith     lcolp = colp;
210082094794SBarry Smith   } else {
210175f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
210282094794SBarry Smith   }
2103dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
210475f6568bSJed Brown   /* now we just get the submatrix */
21057afc1a8bSJed Brown   ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr);
21067dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2107a0a83eb5SRémi Lacroix   /* clean up */
2108a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2109a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2110a0a83eb5SRémi Lacroix   }
2111dbf0e21dSBarry Smith   if (size>1) {
21126bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
211382094794SBarry Smith   }
211482094794SBarry Smith   PetscFunctionReturn(0);
211582094794SBarry Smith }
211682094794SBarry Smith 
21177087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
21188c7482ecSBarry Smith {
21198c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
21208c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
21218c7482ecSBarry Smith 
21228c7482ecSBarry Smith   PetscFunctionBegin;
212326fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
212426fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
21258c7482ecSBarry Smith   PetscFunctionReturn(0);
21268c7482ecSBarry Smith }
21278c7482ecSBarry Smith 
2128d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2129f6d58c54SBarry Smith {
2130f6d58c54SBarry Smith   Mat            B;
2131f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2132f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2133f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2134f6d58c54SBarry Smith   PetscErrorCode ierr;
2135f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2136f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2137f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2138f6d58c54SBarry Smith 
2139f6d58c54SBarry Smith   PetscFunctionBegin;
2140ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2141ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2142f6d58c54SBarry Smith 
2143f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2144f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2145f6d58c54SBarry Smith   */
2146854ce69bSBarry Smith   ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr);
2147f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2148f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2149f6d58c54SBarry Smith   }
2150785e854fSJed Brown   ierr      = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr);
2151f6d58c54SBarry Smith   displs    = recvcounts + size;
2152f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2153f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2154f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2155f6d58c54SBarry Smith   }
2156f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2157ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2158f6d58c54SBarry Smith #else
21593d3eaba7SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2160ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2161f6d58c54SBarry Smith #endif
2162f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2163f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2164f6d58c54SBarry Smith   */
2165f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2166f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2167f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2168f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2169f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2170f6d58c54SBarry Smith 
2171f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2172f6d58c54SBarry Smith     Copy my part of matrix column indices over
2173f6d58c54SBarry Smith   */
2174f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2175f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2176f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2177f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2178f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2179f6d58c54SBarry Smith   cnt        = 0;
2180f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2181f6d58c54SBarry Smith 
2182f6d58c54SBarry Smith     /* put in lower diagonal portion */
2183f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2184f6d58c54SBarry Smith     while (m > 0) {
2185f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2186f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2187f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2188f6d58c54SBarry Smith       m--;
2189f6d58c54SBarry Smith     }
2190f6d58c54SBarry Smith 
2191f6d58c54SBarry Smith     /* put in diagonal portion */
2192f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2193f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2194f6d58c54SBarry Smith     }
2195f6d58c54SBarry Smith 
2196f6d58c54SBarry Smith     /* put in upper diagonal portion */
2197f6d58c54SBarry Smith     while (m-- > 0) {
2198f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2199f6d58c54SBarry Smith     }
2200f6d58c54SBarry Smith   }
2201e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2202f6d58c54SBarry Smith 
2203f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2204f6d58c54SBarry Smith     Gather all column indices to all processors
2205f6d58c54SBarry Smith   */
2206f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2207f6d58c54SBarry Smith     recvcounts[i] = 0;
2208f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2209f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2210f6d58c54SBarry Smith     }
2211f6d58c54SBarry Smith   }
2212f6d58c54SBarry Smith   displs[0] = 0;
2213f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2214f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2215f6d58c54SBarry Smith   }
2216f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2217ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2218f6d58c54SBarry Smith #else
2219ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2220f6d58c54SBarry Smith #endif
2221f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2222f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2223f6d58c54SBarry Smith   */
2224f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2225580bdb30SBarry Smith   ierr = PetscArraycpy(b->ilen,lens,A->rmap->N/bs);CHKERRQ(ierr);
2226f6d58c54SBarry Smith   /* set the b->i indices */
2227f6d58c54SBarry Smith   b->i[0] = 0;
2228f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2229f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2230f6d58c54SBarry Smith   }
2231f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2232f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2233f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2234f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2235f6d58c54SBarry Smith 
2236f6d58c54SBarry Smith   if (A->symmetric) {
2237f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2238f6d58c54SBarry Smith   } else if (A->hermitian) {
2239f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2240f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2241f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2242f6d58c54SBarry Smith   }
2243f6d58c54SBarry Smith   *newmat = B;
2244f6d58c54SBarry Smith   PetscFunctionReturn(0);
2245f6d58c54SBarry Smith }
2246f6d58c54SBarry Smith 
2247b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2248b1a666ecSBarry Smith {
2249b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2250b1a666ecSBarry Smith   PetscErrorCode ierr;
2251b1a666ecSBarry Smith   Vec            bb1 = 0;
2252b1a666ecSBarry Smith 
2253b1a666ecSBarry Smith   PetscFunctionBegin;
2254b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2255b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2256b1a666ecSBarry Smith     PetscFunctionReturn(0);
2257b1a666ecSBarry Smith   }
2258b1a666ecSBarry Smith 
22594e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
22604e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
22614e980039SJed Brown   }
22624e980039SJed Brown 
2263b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2264b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2265b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2266b1a666ecSBarry Smith       its--;
2267b1a666ecSBarry Smith     }
2268b1a666ecSBarry Smith 
2269b1a666ecSBarry Smith     while (its--) {
2270b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2271b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2272b1a666ecSBarry Smith 
2273b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2274b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2275b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2276b1a666ecSBarry Smith 
2277b1a666ecSBarry Smith       /* local sweep */
2278b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2279b1a666ecSBarry Smith     }
2280b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2281b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2282b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2283b1a666ecSBarry Smith       its--;
2284b1a666ecSBarry Smith     }
2285b1a666ecSBarry Smith     while (its--) {
2286b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2287b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2288b1a666ecSBarry Smith 
2289b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2290b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2291b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2292b1a666ecSBarry Smith 
2293b1a666ecSBarry Smith       /* local sweep */
2294b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2295b1a666ecSBarry Smith     }
2296b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2297b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2298b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2299b1a666ecSBarry Smith       its--;
2300b1a666ecSBarry Smith     }
2301b1a666ecSBarry Smith     while (its--) {
2302b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2303b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2304b1a666ecSBarry Smith 
2305b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2306b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2307b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2308b1a666ecSBarry Smith 
2309b1a666ecSBarry Smith       /* local sweep */
2310b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2311b1a666ecSBarry Smith     }
2312ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2313b1a666ecSBarry Smith 
23146bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2315b1a666ecSBarry Smith   PetscFunctionReturn(0);
2316b1a666ecSBarry Smith }
2317b1a666ecSBarry Smith 
231847f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
231947f7623dSRémi Lacroix {
232047f7623dSRémi Lacroix   PetscErrorCode ierr;
232147f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
232247f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
232347f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
232447f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
232547f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
232647f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
232747f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
232847f7623dSRémi Lacroix   PetscReal      *work;
232947f7623dSRémi Lacroix 
233047f7623dSRémi Lacroix   PetscFunctionBegin;
233147f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
23321795a4d1SJed Brown   ierr = PetscCalloc1(N,&work);CHKERRQ(ierr);
233347f7623dSRémi Lacroix   if (type == NORM_2) {
233447f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
233547f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
233647f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
233747f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
233847f7623dSRémi Lacroix           a_val++;
233947f7623dSRémi Lacroix         }
234047f7623dSRémi Lacroix       }
234147f7623dSRémi Lacroix     }
234247f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
234347f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
234447f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
234547f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
234647f7623dSRémi Lacroix           b_val++;
234747f7623dSRémi Lacroix         }
234847f7623dSRémi Lacroix       }
234947f7623dSRémi Lacroix     }
235047f7623dSRémi Lacroix   } else if (type == NORM_1) {
235147f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
235247f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
235347f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
235447f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
235547f7623dSRémi Lacroix           a_val++;
235647f7623dSRémi Lacroix         }
235747f7623dSRémi Lacroix       }
235847f7623dSRémi Lacroix     }
235947f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
236047f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
236147f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
236247f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
236347f7623dSRémi Lacroix           b_val++;
236447f7623dSRémi Lacroix         }
236547f7623dSRémi Lacroix       }
236647f7623dSRémi Lacroix     }
236747f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
236847f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
236947f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
237047f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
237147f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
237247f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
237347f7623dSRémi Lacroix           a_val++;
237447f7623dSRémi Lacroix         }
237547f7623dSRémi Lacroix       }
237647f7623dSRémi Lacroix     }
237747f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
237847f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
237947f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
238047f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
238147f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
238247f7623dSRémi Lacroix           b_val++;
238347f7623dSRémi Lacroix         }
238447f7623dSRémi Lacroix       }
238547f7623dSRémi Lacroix     }
238647f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
238747f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
2388b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
238947f7623dSRémi Lacroix   } else {
2390b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
239147f7623dSRémi Lacroix   }
239247f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
239347f7623dSRémi Lacroix   if (type == NORM_2) {
239447f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
239547f7623dSRémi Lacroix   }
239647f7623dSRémi Lacroix   PetscFunctionReturn(0);
239747f7623dSRémi Lacroix }
239847f7623dSRémi Lacroix 
2399713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2400bbead8a2SBarry Smith {
2401bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2402bbead8a2SBarry Smith   PetscErrorCode ierr;
2403bbead8a2SBarry Smith 
2404bbead8a2SBarry Smith   PetscFunctionBegin;
2405bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
24067b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
24077b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
24087b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
2409bbead8a2SBarry Smith   PetscFunctionReturn(0);
2410bbead8a2SBarry Smith }
2411bbead8a2SBarry Smith 
24127d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a)
24137d68702bSBarry Smith {
24147d68702bSBarry Smith   PetscErrorCode ierr;
24157d68702bSBarry Smith   Mat_MPIBAIJ    *maij = (Mat_MPIBAIJ*)Y->data;
24166f33a894SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)maij->A->data;
24177d68702bSBarry Smith 
24187d68702bSBarry Smith   PetscFunctionBegin;
24196f33a894SBarry Smith   if (!Y->preallocated) {
24207d68702bSBarry Smith     ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
24216f33a894SBarry Smith   } else if (!aij->nz) {
2422b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
24236f33a894SBarry Smith     ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
2424b83222d8SBarry Smith     aij->nonew = nonew;
24257d68702bSBarry Smith   }
24267d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
24277d68702bSBarry Smith   PetscFunctionReturn(0);
24287d68702bSBarry Smith }
24298c7482ecSBarry Smith 
24303b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
24313b49f96aSBarry Smith {
24323b49f96aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
24333b49f96aSBarry Smith   PetscErrorCode ierr;
24343b49f96aSBarry Smith 
24353b49f96aSBarry Smith   PetscFunctionBegin;
24363b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
24373b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
24383b49f96aSBarry Smith   if (d) {
24393b49f96aSBarry Smith     PetscInt rstart;
24403b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
24413b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
24423b49f96aSBarry Smith 
24433b49f96aSBarry Smith   }
24443b49f96aSBarry Smith   PetscFunctionReturn(0);
24453b49f96aSBarry Smith }
24463b49f96aSBarry Smith 
2447a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
2448a5b7ff6bSBarry Smith {
2449a5b7ff6bSBarry Smith   PetscFunctionBegin;
2450a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
2451a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2452a5b7ff6bSBarry Smith }
2453a5b7ff6bSBarry Smith 
245479bdfe76SSatish Balay /* -------------------------------------------------------------------*/
24553964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2456cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2457cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2458cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
245997304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
24607c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24617c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2462cc2dc46cSBarry Smith                                        0,
2463cc2dc46cSBarry Smith                                        0,
2464cc2dc46cSBarry Smith                                        0,
246597304618SKris Buschelman                                 /*10*/ 0,
2466cc2dc46cSBarry Smith                                        0,
2467cc2dc46cSBarry Smith                                        0,
2468b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2469cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
247097304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
24717fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2472cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2473cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2474cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
247597304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2476cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2477cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2478cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2479d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2480cc2dc46cSBarry Smith                                        0,
2481cc2dc46cSBarry Smith                                        0,
2482cc2dc46cSBarry Smith                                        0,
2483cc2dc46cSBarry Smith                                        0,
24844994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2485273d9f13SBarry Smith                                        0,
2486cc2dc46cSBarry Smith                                        0,
2487a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2488cc2dc46cSBarry Smith                                        0,
2489d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2490cc2dc46cSBarry Smith                                        0,
2491cc2dc46cSBarry Smith                                        0,
2492cc2dc46cSBarry Smith                                        0,
2493cc2dc46cSBarry Smith                                        0,
2494d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
24957dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2496cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2497cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24983c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2499d519adbfSMatthew Knepley                                 /*44*/ 0,
2500cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
25017d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2502cc2dc46cSBarry Smith                                        0,
25036f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2504f73d5cc4SBarry Smith                                 /*49*/ 0,
2505cc2dc46cSBarry Smith                                        0,
2506cc2dc46cSBarry Smith                                        0,
2507cc2dc46cSBarry Smith                                        0,
2508cc2dc46cSBarry Smith                                        0,
250993dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2510cc2dc46cSBarry Smith                                        0,
2511cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
251282094794SBarry Smith                                        MatPermute_MPIBAIJ,
2513cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
25147dae84e0SHong Zhang                                 /*59*/ MatCreateSubMatrix_MPIBAIJ,
2515f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2516f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2517357abbc8SBarry Smith                                        0,
25187843d17aSBarry Smith                                        0,
2519d519adbfSMatthew Knepley                                 /*64*/ 0,
25207843d17aSBarry Smith                                        0,
25217843d17aSBarry Smith                                        0,
25227843d17aSBarry Smith                                        0,
25237843d17aSBarry Smith                                        0,
2524d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
25257843d17aSBarry Smith                                        0,
252697304618SKris Buschelman                                        0,
252797304618SKris Buschelman                                        0,
252897304618SKris Buschelman                                        0,
2529d519adbfSMatthew Knepley                                 /*74*/ 0,
2530f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
253197304618SKris Buschelman                                        0,
253297304618SKris Buschelman                                        0,
253397304618SKris Buschelman                                        0,
2534d519adbfSMatthew Knepley                                 /*79*/ 0,
253597304618SKris Buschelman                                        0,
253697304618SKris Buschelman                                        0,
253797304618SKris Buschelman                                        0,
25385bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2539d519adbfSMatthew Knepley                                 /*84*/ 0,
2540865e5f61SKris Buschelman                                        0,
2541865e5f61SKris Buschelman                                        0,
2542865e5f61SKris Buschelman                                        0,
2543865e5f61SKris Buschelman                                        0,
2544d519adbfSMatthew Knepley                                 /*89*/ 0,
2545865e5f61SKris Buschelman                                        0,
2546865e5f61SKris Buschelman                                        0,
2547865e5f61SKris Buschelman                                        0,
2548865e5f61SKris Buschelman                                        0,
2549d519adbfSMatthew Knepley                                 /*94*/ 0,
2550865e5f61SKris Buschelman                                        0,
2551865e5f61SKris Buschelman                                        0,
255299cafbc1SBarry Smith                                        0,
255399cafbc1SBarry Smith                                        0,
2554d519adbfSMatthew Knepley                                 /*99*/ 0,
255599cafbc1SBarry Smith                                        0,
255699cafbc1SBarry Smith                                        0,
255799cafbc1SBarry Smith                                        0,
255899cafbc1SBarry Smith                                        0,
2559d519adbfSMatthew Knepley                                 /*104*/0,
256099cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25618c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
25628c7482ecSBarry Smith                                        0,
25638c7482ecSBarry Smith                                        0,
2564d519adbfSMatthew Knepley                                 /*109*/0,
25658c7482ecSBarry Smith                                        0,
25668c7482ecSBarry Smith                                        0,
25678c7482ecSBarry Smith                                        0,
25683b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2569d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
25708c7482ecSBarry Smith                                        0,
25714683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
25724683f7a4SShri Abhyankar                                        0,
25734683f7a4SShri Abhyankar                                        0,
25744683f7a4SShri Abhyankar                                 /*119*/0,
25754683f7a4SShri Abhyankar                                        0,
25764683f7a4SShri Abhyankar                                        0,
2577bbead8a2SBarry Smith                                        0,
2578e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2579bbead8a2SBarry Smith                                 /*124*/0,
258047f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
25813964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
25823964eb88SJed Brown                                        0,
25833964eb88SJed Brown                                        0,
25843964eb88SJed Brown                                /*129*/ 0,
25853964eb88SJed Brown                                        0,
25863964eb88SJed Brown                                        0,
25873964eb88SJed Brown                                        0,
25883964eb88SJed Brown                                        0,
25893964eb88SJed Brown                                /*134*/ 0,
25903964eb88SJed Brown                                        0,
25913964eb88SJed Brown                                        0,
25923964eb88SJed Brown                                        0,
25933964eb88SJed Brown                                        0,
259446533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2595f9426fe0SMark Adams                                        0,
25961919a2e2SJed Brown                                        0,
2597bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2598bdf6f3fcSHong Zhang                                        0,
2599bdf6f3fcSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ
26008c7482ecSBarry Smith };
260179bdfe76SSatish Balay 
260279bdfe76SSatish Balay 
2603cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*);
2604c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*);
2605d94109b8SHong Zhang 
2606cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2607aac34f13SBarry Smith {
2608b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
260937cd3c0dSBarry Smith   PetscInt       i,j,dlen,olen,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2610b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2611b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2612d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2613aac34f13SBarry Smith   PetscErrorCode ierr;
26143bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2615aac34f13SBarry Smith 
2616aac34f13SBarry Smith   PetscFunctionBegin;
261726283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
261826283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
261926283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
262026283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2621e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2622d0f46423SBarry Smith   m      = B->rmap->n/bs;
2623d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2624d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2625d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2626b8d659d7SLisandro Dalcin 
2627e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2628dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2629aac34f13SBarry Smith   for (i=0; i<m; i++) {
2630cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2631e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2632b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
263337cd3c0dSBarry Smith     dlen   = 0;
263437cd3c0dSBarry Smith     olen   = 0;
2635cf12db73SBarry Smith     JJ     = jj + ii[i];
2636b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
263737cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
263837cd3c0dSBarry Smith       else dlen++;
2639aac34f13SBarry Smith       JJ++;
2640aac34f13SBarry Smith     }
264137cd3c0dSBarry Smith     d_nnz[i] = dlen;
264237cd3c0dSBarry Smith     o_nnz[i] = olen;
2643aac34f13SBarry Smith   }
2644aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2645fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2646aac34f13SBarry Smith 
2647b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2648b8d659d7SLisandro Dalcin   if (!values) {
264937cd3c0dSBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2650b8d659d7SLisandro Dalcin   }
2651b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2652b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2653cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2654cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2655bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2656cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2657b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
26583adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
26593adadaf3SJed Brown       PetscInt j;
26603adadaf3SJed Brown       for (j=0; j<ncols; j++) {
26613adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
26623adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
26633adadaf3SJed Brown       }
26643adadaf3SJed Brown     }
2665aac34f13SBarry Smith   }
2666aac34f13SBarry Smith 
2667b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
26683bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26693bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2670aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2671aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26723bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26733bd0feecSPierre Jolivet 
26747827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2675aac34f13SBarry Smith   PetscFunctionReturn(0);
2676aac34f13SBarry Smith }
2677aac34f13SBarry Smith 
2678aac34f13SBarry Smith /*@C
2679664954b6SBarry Smith    MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values
2680aac34f13SBarry Smith 
2681d083f849SBarry Smith    Collective
2682aac34f13SBarry Smith 
2683aac34f13SBarry Smith    Input Parameters:
26841c4f3114SJed Brown +  B - the matrix
2685dfb205c3SBarry Smith .  bs - the block size
2686aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2687aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2688aac34f13SBarry Smith -  v - optional values in the matrix
2689aac34f13SBarry Smith 
2690664954b6SBarry Smith    Level: advanced
2691aac34f13SBarry Smith 
269295452b02SPatrick Sanan    Notes:
269395452b02SPatrick Sanan     The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
26943adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
26953adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
26963adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26973adadaf3SJed Brown    block column and the second index is over columns within a block.
26983adadaf3SJed Brown 
2699664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2700664954b6SBarry Smith 
27013adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2702aac34f13SBarry Smith @*/
27037087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2704aac34f13SBarry Smith {
27054ac538c5SBarry Smith   PetscErrorCode ierr;
2706aac34f13SBarry Smith 
2707aac34f13SBarry Smith   PetscFunctionBegin;
27086ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
27096ba663aaSJed Brown   PetscValidType(B,1);
27106ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
27114ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2712aac34f13SBarry Smith   PetscFunctionReturn(0);
2713aac34f13SBarry Smith }
2714aac34f13SBarry Smith 
2715b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2716a23d5eceSKris Buschelman {
2717a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2718dfbe8321SBarry Smith   PetscErrorCode ierr;
2719535b19f3SBarry Smith   PetscInt       i;
27205d2a9ed1SStefano Zampini   PetscMPIInt    size;
2721a23d5eceSKris Buschelman 
2722a23d5eceSKris Buschelman   PetscFunctionBegin;
272333d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
272426283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
272526283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2726e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2727899cda47SBarry Smith 
2728a23d5eceSKris Buschelman   if (d_nnz) {
2729d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2730e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2731a23d5eceSKris Buschelman     }
2732a23d5eceSKris Buschelman   }
2733a23d5eceSKris Buschelman   if (o_nnz) {
2734d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2735e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2736a23d5eceSKris Buschelman     }
2737a23d5eceSKris Buschelman   }
2738a23d5eceSKris Buschelman 
2739a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2740a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2741d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2742d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2743d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2744d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2745a23d5eceSKris Buschelman 
2746a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2747d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2748a23d5eceSKris Buschelman   }
2749d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2750d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2751d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2752d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2753a23d5eceSKris Buschelman 
2754cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2755cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2756cb7b82ddSBarry Smith #else
2757cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2758cb7b82ddSBarry Smith #endif
2759cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2760cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2761cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2762cb7b82ddSBarry Smith 
2763cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
27645d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2765cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2766cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
27675d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2768cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2769cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2770cb7b82ddSBarry Smith 
2771526dfc15SBarry Smith   if (!B->preallocated) {
2772f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2773d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
27749c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
27753bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2776ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2777526dfc15SBarry Smith   }
2778a23d5eceSKris Buschelman 
2779526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2780526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2781526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2782cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2783cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2784a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2785a23d5eceSKris Buschelman }
2786a23d5eceSKris Buschelman 
27877087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
27887087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
27895bf65638SKris Buschelman 
2790cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
279182094794SBarry Smith {
279282094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
279382094794SBarry Smith   PetscErrorCode ierr;
279482094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
279582094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
279682094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
279782094794SBarry Smith 
279882094794SBarry Smith   PetscFunctionBegin;
2799854ce69bSBarry Smith   ierr  = PetscMalloc1(M+1,&ii);CHKERRQ(ierr);
280082094794SBarry Smith   ii[0] = 0;
280182094794SBarry Smith   for (i=0; i<M; i++) {
2802e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2803e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
280482094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
28055ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
28065ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
28075ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
28085ee9ba1cSJed Brown     }
280982094794SBarry Smith   }
2810785e854fSJed Brown   ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr);
281182094794SBarry Smith   cnt  = 0;
281282094794SBarry Smith   for (i=0; i<M; i++) {
281382094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
281482094794SBarry Smith       if (garray[jo[j]] > rstart) break;
281582094794SBarry Smith       jj[cnt++] = garray[jo[j]];
281682094794SBarry Smith     }
281782094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
28185ee9ba1cSJed Brown       if (jd[k] != i) {
281982094794SBarry Smith         jj[cnt++] = rstart + jd[k];
282082094794SBarry Smith       }
28215ee9ba1cSJed Brown     }
282282094794SBarry Smith     for (; j<io[i+1]; j++) {
282382094794SBarry Smith       jj[cnt++] = garray[jo[j]];
282482094794SBarry Smith     }
282582094794SBarry Smith   }
2826ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
282782094794SBarry Smith   PetscFunctionReturn(0);
282882094794SBarry Smith }
282982094794SBarry Smith 
2830c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
283162471d69SBarry Smith 
2832cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2833b2573a8aSBarry Smith 
2834cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
283562471d69SBarry Smith {
283662471d69SBarry Smith   PetscErrorCode ierr;
283762471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
283862471d69SBarry Smith   Mat            B;
283985a69837SSatish Balay   Mat_MPIAIJ     *b;
284062471d69SBarry Smith 
284162471d69SBarry Smith   PetscFunctionBegin;
2842ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
284362471d69SBarry Smith 
28440f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28450f6d62edSLisandro Dalcin     B = *newmat;
28460f6d62edSLisandro Dalcin   } else {
2847ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
28486d0a4a0eSHong Zhang     ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
2849f090d951SRémi Lacroix     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2850f090d951SRémi Lacroix     ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr);
28510298fd71SBarry Smith     ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
28520298fd71SBarry Smith     ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
28530f6d62edSLisandro Dalcin   }
285462471d69SBarry Smith   b = (Mat_MPIAIJ*) B->data;
285562471d69SBarry Smith 
28560f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28570f6d62edSLisandro Dalcin     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr);
28580f6d62edSLisandro Dalcin     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr);
28590f6d62edSLisandro Dalcin   } else {
28606bf464f9SBarry Smith     ierr = MatDestroy(&b->A);CHKERRQ(ierr);
28616bf464f9SBarry Smith     ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2862ab9863d7SBarry Smith     ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
286362471d69SBarry Smith     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
286462471d69SBarry Smith     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
28656a719282SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28666a719282SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28670f6d62edSLisandro Dalcin   }
28680f6d62edSLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28690f6d62edSLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28700f6d62edSLisandro Dalcin 
2871511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
287228be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
287362471d69SBarry Smith   } else {
287462471d69SBarry Smith    *newmat = B;
287562471d69SBarry Smith   }
287662471d69SBarry Smith   PetscFunctionReturn(0);
287762471d69SBarry Smith }
287862471d69SBarry Smith 
28790bad9183SKris Buschelman /*MC
2880fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28810bad9183SKris Buschelman 
28820bad9183SKris Buschelman    Options Database Keys:
28838c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
28848c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28858c07d4e3SBarry Smith - -mat_use_hash_table <fact>
28860bad9183SKris Buschelman 
28870bad9183SKris Buschelman    Level: beginner
28880cd7f59aSBarry Smith 
28890cd7f59aSBarry Smith    Notes:
28900cd7f59aSBarry Smith     MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no
28910cd7f59aSBarry Smith     space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored
28920bad9183SKris Buschelman 
2893fd292e60Sprj- .seealso: MatCreateBAIJ
28940bad9183SKris Buschelman M*/
28950bad9183SKris Buschelman 
2896cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
2897c0cdd4a1SDahai Guo 
28988cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2899273d9f13SBarry Smith {
2900273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2901dfbe8321SBarry Smith   PetscErrorCode ierr;
290294ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2903273d9f13SBarry Smith 
2904273d9f13SBarry Smith   PetscFunctionBegin;
2905b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
290682502324SSatish Balay   B->data = (void*)b;
290782502324SSatish Balay 
2908273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2909273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2910273d9f13SBarry Smith 
2911273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2912ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2913ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2914273d9f13SBarry Smith 
2915273d9f13SBarry Smith   /* build local table of row and column ownerships */
2916854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr);
2917273d9f13SBarry Smith 
2918273d9f13SBarry Smith   /* build cache for off array entries formed */
2919ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
292026fbe8dcSKarl Rupp 
2921273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
29220298fd71SBarry Smith   b->colmap      = NULL;
29230298fd71SBarry Smith   b->garray      = NULL;
2924273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2925273d9f13SBarry Smith 
2926273d9f13SBarry Smith   /* stuff used in block assembly */
2927273d9f13SBarry Smith   b->barray = 0;
2928273d9f13SBarry Smith 
2929273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2930273d9f13SBarry Smith   b->lvec  = 0;
2931273d9f13SBarry Smith   b->Mvctx = 0;
2932273d9f13SBarry Smith 
2933273d9f13SBarry Smith   /* stuff for MatGetRow() */
2934273d9f13SBarry Smith   b->rowindices   = 0;
2935273d9f13SBarry Smith   b->rowvalues    = 0;
2936273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2937273d9f13SBarry Smith 
2938273d9f13SBarry Smith   /* hash table stuff */
2939273d9f13SBarry Smith   b->ht           = 0;
2940273d9f13SBarry Smith   b->hd           = 0;
2941273d9f13SBarry Smith   b->ht_size      = 0;
2942273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2943273d9f13SBarry Smith   b->ht_fact      = 0;
2944273d9f13SBarry Smith   b->ht_total_ct  = 0;
2945273d9f13SBarry Smith   b->ht_insert_ct = 0;
2946273d9f13SBarry Smith 
29477dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29487a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29497a868f3eSHong Zhang 
29508c07d4e3SBarry Smith 
2951bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
2952bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
2953bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
29547ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29557ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr);
29567ea3e4caSstefano_zampini #endif
2957bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2958bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2959bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2960bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
2961bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
2962bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
2963c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr);
296417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
296594ae4db5SBarry Smith 
296694ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
2967abf3b562SBarry Smith   ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr);
296894ae4db5SBarry Smith   if (flg) {
296994ae4db5SBarry Smith     PetscReal fact = 1.39;
297094ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
297194ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
297294ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
297394ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
297494ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
297594ae4db5SBarry Smith   }
297694ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2977273d9f13SBarry Smith   PetscFunctionReturn(0);
2978273d9f13SBarry Smith }
2979273d9f13SBarry Smith 
2980209238afSKris Buschelman /*MC
2981002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2982209238afSKris Buschelman 
2983209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2984209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2985209238afSKris Buschelman 
2986209238afSKris Buschelman    Options Database Keys:
2987209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2988209238afSKris Buschelman 
2989209238afSKris Buschelman   Level: beginner
2990209238afSKris Buschelman 
299169b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2992209238afSKris Buschelman M*/
2993209238afSKris Buschelman 
2994273d9f13SBarry Smith /*@C
2995aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2996273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2997273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2998273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2999273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3000273d9f13SBarry Smith 
3001273d9f13SBarry Smith    Collective on Mat
3002273d9f13SBarry Smith 
3003273d9f13SBarry Smith    Input Parameters:
30041c4f3114SJed Brown +  B - the matrix
3005bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3006bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3007273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3008273d9f13SBarry Smith            submatrix  (same for all local rows)
3009273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3010273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
30110298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
301295742e49SBarry Smith            set it even if it is zero.
3013273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3014273d9f13SBarry Smith            submatrix (same for all local rows).
3015273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3016273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
30170298fd71SBarry Smith            each block row) or NULL.
3018273d9f13SBarry Smith 
301949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3020273d9f13SBarry Smith 
3021273d9f13SBarry Smith    Options Database Keys:
30228c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30238c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3024273d9f13SBarry Smith 
3025273d9f13SBarry Smith    Notes:
3026273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3027273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3028273d9f13SBarry Smith 
3029273d9f13SBarry Smith    Storage Information:
3030273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3031273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3032273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3033273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3034273d9f13SBarry Smith 
3035273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3036273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
30370298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3038273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3039273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3040273d9f13SBarry Smith 
3041273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3042273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3043273d9f13SBarry Smith 
3044273d9f13SBarry Smith .vb
3045273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3046a4b1a0f6SJed Brown           --------------------------
3047273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3048273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3049273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3050a4b1a0f6SJed Brown           --------------------------
3051273d9f13SBarry Smith .ve
3052273d9f13SBarry Smith 
3053273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3054273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3055273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3056273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3057273d9f13SBarry Smith 
3058273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3059273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3060273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3061273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3062273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3063273d9f13SBarry Smith    matrices.
3064273d9f13SBarry Smith 
3065aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3066aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3067aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3068aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3069aa95bbe8SBarry Smith 
3070273d9f13SBarry Smith    Level: intermediate
3071273d9f13SBarry Smith 
3072ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3073273d9f13SBarry Smith @*/
30747087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3075273d9f13SBarry Smith {
30764ac538c5SBarry Smith   PetscErrorCode ierr;
3077273d9f13SBarry Smith 
3078273d9f13SBarry Smith   PetscFunctionBegin;
30796ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
30806ba663aaSJed Brown   PetscValidType(B,1);
30816ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
30824ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3083273d9f13SBarry Smith   PetscFunctionReturn(0);
3084273d9f13SBarry Smith }
3085273d9f13SBarry Smith 
308679bdfe76SSatish Balay /*@C
308769b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
308879bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
308979bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
309079bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
309179bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
309279bdfe76SSatish Balay 
3093d083f849SBarry Smith    Collective
3094db81eaa0SLois Curfman McInnes 
309579bdfe76SSatish Balay    Input Parameters:
3096db81eaa0SLois Curfman McInnes +  comm - MPI communicator
3097bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3098bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
309979bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
310092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
310192e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
310292e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
310392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
310492e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3105be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3106be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
310747a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
310879bdfe76SSatish Balay            submatrix  (same for all local rows)
310947a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
311092e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
31110298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
311295742e49SBarry Smith            and set it even if it is zero.
311347a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
311479bdfe76SSatish Balay            submatrix (same for all local rows).
311547a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
311692e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
31170298fd71SBarry Smith            each block row) or NULL.
311879bdfe76SSatish Balay 
311979bdfe76SSatish Balay    Output Parameter:
312079bdfe76SSatish Balay .  A - the matrix
312179bdfe76SSatish Balay 
3122db81eaa0SLois Curfman McInnes    Options Database Keys:
31238c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31248c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
31253ffaccefSLois Curfman McInnes 
3126175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3127f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3128175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3129175b88e8SBarry Smith 
3130b259b22eSLois Curfman McInnes    Notes:
313149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
313249a6f317SBarry Smith 
313347a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
313447a75d0bSBarry Smith 
313579bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
313679bdfe76SSatish Balay    (possibly both).
313779bdfe76SSatish Balay 
3138be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3139be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3140be79a94dSBarry Smith 
314179bdfe76SSatish Balay    Storage Information:
314279bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
314379bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
314479bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
314579bdfe76SSatish Balay    local matrix (a rectangular submatrix).
314679bdfe76SSatish Balay 
314779bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
314879bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
31490298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
315079bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
315179bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
315279bdfe76SSatish Balay 
315379bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
315479bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
315579bdfe76SSatish Balay 
3156db81eaa0SLois Curfman McInnes .vb
3157db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3158a4b1a0f6SJed Brown           --------------------------
3159db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3160db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3161db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3162a4b1a0f6SJed Brown           --------------------------
3163db81eaa0SLois Curfman McInnes .ve
316479bdfe76SSatish Balay 
316579bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
316679bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
316779bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
316857b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
316979bdfe76SSatish Balay 
3170d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3171d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
317279bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
317392e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
317492e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31756da5968aSLois Curfman McInnes    matrices.
317679bdfe76SSatish Balay 
3177027ccd11SLois Curfman McInnes    Level: intermediate
3178027ccd11SLois Curfman McInnes 
317969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
318079bdfe76SSatish Balay @*/
318169b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
318279bdfe76SSatish Balay {
31836849ba73SBarry Smith   PetscErrorCode ierr;
3184b24ad042SBarry Smith   PetscMPIInt    size;
318579bdfe76SSatish Balay 
3186d64ed03dSBarry Smith   PetscFunctionBegin;
3187f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3188f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3189d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3190273d9f13SBarry Smith   if (size > 1) {
3191273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3192273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3193273d9f13SBarry Smith   } else {
3194273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3195273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
31963914022bSBarry Smith   }
31973a40ed3dSBarry Smith   PetscFunctionReturn(0);
319879bdfe76SSatish Balay }
3199026e39d0SSatish Balay 
32006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
32010ac07820SSatish Balay {
32020ac07820SSatish Balay   Mat            mat;
32030ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3204dfbe8321SBarry Smith   PetscErrorCode ierr;
3205b24ad042SBarry Smith   PetscInt       len=0;
32060ac07820SSatish Balay 
3207d64ed03dSBarry Smith   PetscFunctionBegin;
32080ac07820SSatish Balay   *newmat = 0;
3209ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3210d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
32117adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
32127fff6886SHong Zhang 
3213d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3214273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32150ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32167fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32177fff6886SHong Zhang 
3218273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3219d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
32200ac07820SSatish Balay   a->bs2        = oldmat->bs2;
32210ac07820SSatish Balay   a->mbs        = oldmat->mbs;
32220ac07820SSatish Balay   a->nbs        = oldmat->nbs;
32230ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
32240ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
32250ac07820SSatish Balay 
32261e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
32271e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3228899cda47SBarry Smith 
32290ac07820SSatish Balay   a->size         = oldmat->size;
32300ac07820SSatish Balay   a->rank         = oldmat->rank;
3231aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3232aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3233aef5e8e0SSatish Balay   a->rowindices   = 0;
32340ac07820SSatish Balay   a->rowvalues    = 0;
32350ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
323630793edcSSatish Balay   a->barray       = 0;
3237899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3238899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3239899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3240899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32410ac07820SSatish Balay 
3242133cdb44SSatish Balay   /* hash table stuff */
3243133cdb44SSatish Balay   a->ht           = 0;
3244133cdb44SSatish Balay   a->hd           = 0;
3245133cdb44SSatish Balay   a->ht_size      = 0;
3246133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
324725fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3248133cdb44SSatish Balay   a->ht_total_ct  = 0;
3249133cdb44SSatish Balay   a->ht_insert_ct = 0;
3250133cdb44SSatish Balay 
3251580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1);CHKERRQ(ierr);
32520ac07820SSatish Balay   if (oldmat->colmap) {
3253aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
32540f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
325548e59246SSatish Balay #else
3256854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
32573bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3258580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
325948e59246SSatish Balay #endif
32600ac07820SSatish Balay   } else a->colmap = 0;
32614beb1cfeSHong Zhang 
32620ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3263785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
32643bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3265580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
32660ac07820SSatish Balay   } else a->garray = 0;
32670ac07820SSatish Balay 
3268ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
32690ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
32703bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
32710ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
32723bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
32737fff6886SHong Zhang 
32742e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
32753bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
32762e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
32773bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3278140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
32790ac07820SSatish Balay   *newmat = mat;
32803a40ed3dSBarry Smith   PetscFunctionReturn(0);
32810ac07820SSatish Balay }
328257b952d6SSatish Balay 
3283618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3284b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
3285b51a4376SLisandro Dalcin {
3286b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k;
3287b51a4376SLisandro Dalcin   PetscInt       *rowidxs,*colidxs,rs,cs,ce;
3288b51a4376SLisandro Dalcin   PetscScalar    *matvals;
3289b51a4376SLisandro Dalcin   PetscErrorCode ierr;
3290b51a4376SLisandro Dalcin 
3291b51a4376SLisandro Dalcin   PetscFunctionBegin;
3292b51a4376SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
3293b51a4376SLisandro Dalcin 
3294b51a4376SLisandro Dalcin   /* read in matrix header */
3295b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
3296b51a4376SLisandro Dalcin   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
3297b51a4376SLisandro Dalcin   M  = header[1]; N = header[2]; nz = header[3];
3298b51a4376SLisandro Dalcin   if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
3299b51a4376SLisandro Dalcin   if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
3300b51a4376SLisandro Dalcin   if (nz < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ");
3301b51a4376SLisandro Dalcin 
3302b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
3303b51a4376SLisandro Dalcin   ierr = MatLoad_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr);
3304618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3305618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3306618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3307b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3308b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3309b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
3310b51a4376SLisandro Dalcin   ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
3311b51a4376SLisandro Dalcin   ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
3312b51a4376SLisandro Dalcin 
3313b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
3314b51a4376SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
3315b51a4376SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%D, %D) than the input matrix (%D, %D)",M,N,rows,cols);
3316b51a4376SLisandro Dalcin   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
3317b51a4376SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
3318b51a4376SLisandro Dalcin   ierr = PetscLayoutGetRange(mat->rmap,&rs,NULL);
3319b51a4376SLisandro Dalcin   ierr = PetscLayoutGetRange(mat->cmap,&cs,&ce);
3320b51a4376SLisandro Dalcin   mbs = m/bs; nbs = n/bs;
3321b51a4376SLisandro Dalcin 
3322b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
3323b51a4376SLisandro Dalcin   ierr = PetscMalloc1(m+1,&rowidxs);CHKERRQ(ierr);
3324b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT);CHKERRQ(ierr);
3325b51a4376SLisandro Dalcin   rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i];
3326b51a4376SLisandro Dalcin   ierr = MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr);
3327b51a4376SLisandro Dalcin   if (sum != nz) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %D, sum-row-lengths = %D\n",nz,sum);
3328b51a4376SLisandro Dalcin 
3329b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
3330b51a4376SLisandro Dalcin   ierr = PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals);CHKERRQ(ierr);
3331b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
3332b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
3333b51a4376SLisandro Dalcin 
3334b51a4376SLisandro Dalcin   { /* preallocate matrix storage */
3335b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3336b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3337618cc2edSLisandro Dalcin     PetscBool  sbaij,done;
3338b51a4376SLisandro Dalcin     PetscInt   *d_nnz,*o_nnz;
3339b51a4376SLisandro Dalcin 
3340b51a4376SLisandro Dalcin     ierr = PetscBTCreate(nbs,&bt);CHKERRQ(ierr);
3341b51a4376SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
3342b51a4376SLisandro Dalcin     ierr = PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz);CHKERRQ(ierr);
3343618cc2edSLisandro Dalcin     ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij);CHKERRQ(ierr);
3344b51a4376SLisandro Dalcin     for (i=0; i<mbs; i++) {
3345b51a4376SLisandro Dalcin       ierr = PetscBTMemzero(nbs,bt);CHKERRQ(ierr);
3346b51a4376SLisandro Dalcin       ierr = PetscHSetIClear(ht);CHKERRQ(ierr);
3347618cc2edSLisandro Dalcin       for (k=0; k<bs; k++) {
3348618cc2edSLisandro Dalcin         PetscInt row = bs*i + k;
3349618cc2edSLisandro Dalcin         for (j=rowidxs[row]; j<rowidxs[row+1]; j++) {
3350618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3351618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3352618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3353618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++;
3354b51a4376SLisandro Dalcin             } else {
3355618cc2edSLisandro Dalcin               ierr = PetscHSetIQueryAdd(ht,col/bs,&done);CHKERRQ(ierr);
3356b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3357b51a4376SLisandro Dalcin             }
3358b51a4376SLisandro Dalcin           }
3359618cc2edSLisandro Dalcin         }
3360618cc2edSLisandro Dalcin       }
3361618cc2edSLisandro Dalcin     }
3362b51a4376SLisandro Dalcin     ierr = PetscBTDestroy(&bt);CHKERRQ(ierr);
3363b51a4376SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
3364b51a4376SLisandro Dalcin     ierr = MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
3365618cc2edSLisandro Dalcin     ierr = MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
3366b51a4376SLisandro Dalcin     ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
3367b51a4376SLisandro Dalcin   }
3368b51a4376SLisandro Dalcin 
3369b51a4376SLisandro Dalcin   /* store matrix values */
3370b51a4376SLisandro Dalcin   for (i=0; i<m; i++) {
3371b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1];
3372618cc2edSLisandro Dalcin     ierr = (*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES);CHKERRQ(ierr);
3373b51a4376SLisandro Dalcin   }
3374b51a4376SLisandro Dalcin 
3375b51a4376SLisandro Dalcin   ierr = PetscFree(rowidxs);CHKERRQ(ierr);
3376b51a4376SLisandro Dalcin   ierr = PetscFree2(colidxs,matvals);CHKERRQ(ierr);
3377b51a4376SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3378b51a4376SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3379b51a4376SLisandro Dalcin   PetscFunctionReturn(0);
3380b51a4376SLisandro Dalcin }
3381b51a4376SLisandro Dalcin 
3382b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer)
33834683f7a4SShri Abhyankar {
33844683f7a4SShri Abhyankar   PetscErrorCode ierr;
33857f489da9SVaclav Hapla   PetscBool      isbinary;
33864683f7a4SShri Abhyankar 
33874683f7a4SShri Abhyankar   PetscFunctionBegin;
33887f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
3389b51a4376SLisandro Dalcin   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
3390b51a4376SLisandro Dalcin   ierr = MatLoad_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
33914683f7a4SShri Abhyankar   PetscFunctionReturn(0);
33924683f7a4SShri Abhyankar }
33934683f7a4SShri Abhyankar 
3394133cdb44SSatish Balay /*@
3395133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3396133cdb44SSatish Balay 
3397133cdb44SSatish Balay    Input Parameters:
3398a2b725a8SWilliam Gropp +  mat  - the matrix
3399a2b725a8SWilliam Gropp -  fact - factor
3400133cdb44SSatish Balay 
3401c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3402fee21e36SBarry Smith 
34038c890885SBarry Smith    Level: advanced
34048c890885SBarry Smith 
3405133cdb44SSatish Balay   Notes:
34068c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3407133cdb44SSatish Balay 
3408133cdb44SSatish Balay .seealso: MatSetOption()
3409133cdb44SSatish Balay @*/
34107087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3411133cdb44SSatish Balay {
34124ac538c5SBarry Smith   PetscErrorCode ierr;
34135bf65638SKris Buschelman 
34145bf65638SKris Buschelman   PetscFunctionBegin;
34154ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
34165bf65638SKris Buschelman   PetscFunctionReturn(0);
34175bf65638SKris Buschelman }
34185bf65638SKris Buschelman 
34197087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
34205bf65638SKris Buschelman {
342125fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3422133cdb44SSatish Balay 
3423133cdb44SSatish Balay   PetscFunctionBegin;
3424133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3425133cdb44SSatish Balay   baij->ht_fact = fact;
3426133cdb44SSatish Balay   PetscFunctionReturn(0);
3427133cdb44SSatish Balay }
3428f2a5309cSSatish Balay 
34299230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3430f2a5309cSSatish Balay {
3431f2a5309cSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
3432ab4d48faSStefano Zampini   PetscBool      flg;
3433ab4d48faSStefano Zampini   PetscErrorCode ierr;
34345fd66863SKarl Rupp 
3435f2a5309cSSatish Balay   PetscFunctionBegin;
3436ab4d48faSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg);CHKERRQ(ierr);
3437ab4d48faSStefano Zampini   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input");
343821e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
343921e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
344021e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3441f2a5309cSSatish Balay   PetscFunctionReturn(0);
3442f2a5309cSSatish Balay }
344385535b8eSBarry Smith 
344485535b8eSBarry Smith /*
344585535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
344685535b8eSBarry Smith */
344785535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
344885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
344985535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
345085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
345185535b8eSBarry Smith #endif
345285535b8eSBarry Smith 
345385535b8eSBarry Smith /*@C
345485535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
345585535b8eSBarry Smith 
345685535b8eSBarry Smith   Collective on Mat
345785535b8eSBarry Smith 
345885535b8eSBarry Smith   Input Parameters:
345985535b8eSBarry Smith + mat - the matrix
346085535b8eSBarry Smith . min - number of input rows
346185535b8eSBarry Smith . im - input rows
346285535b8eSBarry Smith . nin - number of input columns
346385535b8eSBarry Smith . in - input columns
346485535b8eSBarry Smith . v - numerical values input
346585535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
346685535b8eSBarry Smith 
346795452b02SPatrick Sanan   Notes:
346895452b02SPatrick Sanan     This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
346985535b8eSBarry Smith 
347085535b8eSBarry Smith   Level: advanced
347185535b8eSBarry Smith 
347285535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
347385535b8eSBarry Smith @*/
347485535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
347585535b8eSBarry Smith {
347685535b8eSBarry Smith   /* convert input arguments to C version */
347785535b8eSBarry Smith   Mat        mat  = *matin;
347885535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
347985535b8eSBarry Smith   InsertMode addv = *addvin;
348085535b8eSBarry Smith 
348185535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
348285535b8eSBarry Smith   const MatScalar *value;
348385535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3484ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
348585535b8eSBarry Smith   PetscErrorCode  ierr;
348685535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
348785535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3488d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
348985535b8eSBarry Smith 
349085535b8eSBarry Smith   PetscFunctionBegin;
349185535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
349226fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
349385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3494e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3495e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
349685535b8eSBarry Smith #endif
349785535b8eSBarry Smith   if (mat->assembled) {
349885535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
349985535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
350085535b8eSBarry Smith   }
350185535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
350285535b8eSBarry Smith 
350385535b8eSBarry Smith 
350485535b8eSBarry Smith   if (!barray) {
3505785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
350685535b8eSBarry Smith     baij->barray = barray;
350785535b8eSBarry Smith   }
350885535b8eSBarry Smith 
350926fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
351026fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
351126fbe8dcSKarl Rupp 
351285535b8eSBarry Smith   for (i=0; i<m; i++) {
351385535b8eSBarry Smith     if (im[i] < 0) continue;
351485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3515e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
351685535b8eSBarry Smith #endif
351785535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
351885535b8eSBarry Smith       row = im[i] - rstart;
351985535b8eSBarry Smith       for (j=0; j<n; j++) {
352085535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
352185535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
352285535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
352385535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
352485535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
352585535b8eSBarry Smith         } else { /* Here a copy is required */
352685535b8eSBarry Smith           if (roworiented) {
352785535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
352885535b8eSBarry Smith           } else {
352985535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
353085535b8eSBarry Smith           }
353185535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
353285535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
353385535b8eSBarry Smith               *barray++ = *value++;
353485535b8eSBarry Smith             }
353585535b8eSBarry Smith           }
353685535b8eSBarry Smith           barray -=bs2;
353785535b8eSBarry Smith         }
353885535b8eSBarry Smith 
353985535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
354085535b8eSBarry Smith           col  = in[j] - cstart;
35418ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
354226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
354385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3544cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
354585535b8eSBarry Smith #endif
354685535b8eSBarry Smith         else {
354785535b8eSBarry Smith           if (mat->was_assembled) {
354885535b8eSBarry Smith             if (!baij->colmap) {
3549ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
355085535b8eSBarry Smith             }
355185535b8eSBarry Smith 
355285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
355385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
355485535b8eSBarry Smith             { PetscInt data;
355585535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3556e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
355785535b8eSBarry Smith             }
355885535b8eSBarry Smith #else
3559e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
356085535b8eSBarry Smith #endif
356185535b8eSBarry Smith #endif
356285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
356385535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
356485535b8eSBarry Smith             col  = (col - 1)/bs;
356585535b8eSBarry Smith #else
356685535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
356785535b8eSBarry Smith #endif
356885535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3569ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
357085535b8eSBarry Smith               col  =  in[j];
357185535b8eSBarry Smith             }
357226fbe8dcSKarl Rupp           } else col = in[j];
35738ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
357485535b8eSBarry Smith         }
357585535b8eSBarry Smith       }
357685535b8eSBarry Smith     } else {
357785535b8eSBarry Smith       if (!baij->donotstash) {
357885535b8eSBarry Smith         if (roworiented) {
357985535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
358085535b8eSBarry Smith         } else {
358185535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
358285535b8eSBarry Smith         }
358385535b8eSBarry Smith       }
358485535b8eSBarry Smith     }
358585535b8eSBarry Smith   }
358685535b8eSBarry Smith 
358785535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
358885535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
358985535b8eSBarry Smith   PetscFunctionReturn(0);
359085535b8eSBarry Smith }
3591dfb205c3SBarry Smith 
3592dfb205c3SBarry Smith /*@
3593483a2f95SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block
3594dfb205c3SBarry Smith          CSR format the local rows.
3595dfb205c3SBarry Smith 
3596d083f849SBarry Smith    Collective
3597dfb205c3SBarry Smith 
3598dfb205c3SBarry Smith    Input Parameters:
3599dfb205c3SBarry Smith +  comm - MPI communicator
3600dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3601dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3602dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3603dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3604dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3605dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3606dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3607483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3608dfb205c3SBarry Smith .   j - column indices
3609dfb205c3SBarry Smith -   a - matrix values
3610dfb205c3SBarry Smith 
3611dfb205c3SBarry Smith    Output Parameter:
3612dfb205c3SBarry Smith .   mat - the matrix
3613dfb205c3SBarry Smith 
3614dfb205c3SBarry Smith    Level: intermediate
3615dfb205c3SBarry Smith 
3616dfb205c3SBarry Smith    Notes:
3617dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3618dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3619dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3620dfb205c3SBarry Smith 
36213adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
36223adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
36233adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
36243adadaf3SJed Brown      with column-major ordering within blocks.
36253adadaf3SJed Brown 
3626dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3627dfb205c3SBarry Smith 
3628dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
362969b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3630dfb205c3SBarry Smith @*/
36317087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3632dfb205c3SBarry Smith {
3633dfb205c3SBarry Smith   PetscErrorCode ierr;
3634dfb205c3SBarry Smith 
3635dfb205c3SBarry Smith   PetscFunctionBegin;
3636f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3637dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3638dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3639dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
36409a43d2d5SJed Brown   ierr = MatSetType(*mat,MATMPIBAIJ);CHKERRQ(ierr);
364127f91139SJed Brown   ierr = MatSetBlockSize(*mat,bs);CHKERRQ(ierr);
364227f91139SJed Brown   ierr = MatSetUp(*mat);CHKERRQ(ierr);
3643d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
3644dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3645d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
3646dfb205c3SBarry Smith   PetscFunctionReturn(0);
3647dfb205c3SBarry Smith }
3648e561ad89SHong Zhang 
3649bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3650e561ad89SHong Zhang {
3651e561ad89SHong Zhang   PetscErrorCode ierr;
3652bd153df0SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
3653bd153df0SHong Zhang   PetscInt       *indx;
3654bd153df0SHong Zhang   PetscScalar    *values;
3655e561ad89SHong Zhang 
3656e561ad89SHong Zhang   PetscFunctionBegin;
3657e561ad89SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
3658bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3659bd153df0SHong Zhang     Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inmat->data;
36602c6ba4edSHong Zhang     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
3661bd153df0SHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
366277f764caSHong Zhang     PetscMPIInt    rank,size;
3663e561ad89SHong Zhang 
3664bd153df0SHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3665bd153df0SHong Zhang     mbs = m/bs; Nbs = N/cbs;
3666bd153df0SHong Zhang     if (n == PETSC_DECIDE) {
3667da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
3668bd153df0SHong Zhang     }
3669da91a574SPierre Jolivet     nbs = n/cbs;
3670e561ad89SHong Zhang 
3671647a6520SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
367277f764caSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
367377f764caSHong Zhang 
367477f764caSHong Zhang     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
367577f764caSHong Zhang     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
367677f764caSHong Zhang     if (rank == size-1) {
367777f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36782c6ba4edSHong Zhang       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
367977f764caSHong Zhang     }
368077f764caSHong Zhang 
368177f764caSHong Zhang     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
3682bd153df0SHong Zhang     for (i=0; i<mbs; i++) {
3683647a6520SHong Zhang       ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
3684647a6520SHong Zhang       nnz = nnz/bs;
3685647a6520SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
3686647a6520SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
3687647a6520SHong Zhang       ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
3688e561ad89SHong Zhang     }
3689647a6520SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
3690e561ad89SHong Zhang 
3691e561ad89SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
369277f764caSHong Zhang     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
3693e561ad89SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
36948761c3d6SHong Zhang     ierr = MatSetType(*outmat,MATBAIJ);CHKERRQ(ierr);
36958761c3d6SHong Zhang     ierr = MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
3696e561ad89SHong Zhang     ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
3697e561ad89SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
3698e561ad89SHong Zhang   }
3699e561ad89SHong Zhang 
3700bd153df0SHong Zhang   /* numeric phase */
3701647a6520SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3702bd153df0SHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
3703e561ad89SHong Zhang 
3704e561ad89SHong Zhang   for (i=0; i<m; i++) {
3705e561ad89SHong Zhang     ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3706e561ad89SHong Zhang     Ii   = i + rstart;
3707bd153df0SHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
3708e561ad89SHong Zhang     ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3709e561ad89SHong Zhang   }
3710bd153df0SHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3711bd153df0SHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3712e561ad89SHong Zhang   PetscFunctionReturn(0);
3713e561ad89SHong Zhang }
3714