1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 127843d17aSBarry Smith { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 14dfbe8321SBarry Smith PetscErrorCode ierr; 15985db425SBarry Smith PetscInt i,*idxb = 0; 1687828ca2SBarry Smith PetscScalar *va,*vb; 177843d17aSBarry Smith Vec vtmp; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 20985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 211ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 22985db425SBarry Smith if (idx) { 2326fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 2426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2526fbe8dcSKarl Rupp } 26985db425SBarry Smith } 277843d17aSBarry Smith 28d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 29785e854fSJed Brown if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);} 30985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 311ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 327843d17aSBarry Smith 33d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 3426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 3526fbe8dcSKarl Rupp va[i] = vb[i]; 3626fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 3726fbe8dcSKarl Rupp } 387843d17aSBarry Smith } 397843d17aSBarry Smith 401ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 411ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 42c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 447843d17aSBarry Smith PetscFunctionReturn(0); 457843d17aSBarry Smith } 467843d17aSBarry Smith 477087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 487fc3c18eSBarry Smith { 497fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 517fc3c18eSBarry Smith 527fc3c18eSBarry Smith PetscFunctionBegin; 537fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 547fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 557fc3c18eSBarry Smith PetscFunctionReturn(0); 567fc3c18eSBarry Smith } 577fc3c18eSBarry Smith 587087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 597fc3c18eSBarry Smith { 607fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 61dfbe8321SBarry Smith PetscErrorCode ierr; 627fc3c18eSBarry Smith 637fc3c18eSBarry Smith PetscFunctionBegin; 647fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 657fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 667fc3c18eSBarry Smith PetscFunctionReturn(0); 677fc3c18eSBarry Smith } 687fc3c18eSBarry Smith 69537820f0SBarry Smith /* 70537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 72e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7357b952d6SSatish Balay length of colmap equals the global matrix length. 7457b952d6SSatish Balay */ 75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 7657b952d6SSatish Balay { 7757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 7857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8157b952d6SSatish Balay 82d64ed03dSBarry Smith PetscFunctionBegin; 83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 84e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 8548e59246SSatish Balay for (i=0; i<nbs; i++) { 863861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 8748e59246SSatish Balay } 8848e59246SSatish Balay #else 89580bdb30SBarry Smith ierr = PetscCalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 903bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 91928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9248e59246SSatish Balay #endif 933a40ed3dSBarry Smith PetscFunctionReturn(0); 9457b952d6SSatish Balay } 9557b952d6SSatish Balay 96d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 9780c1aa95SSatish Balay { \ 9880c1aa95SSatish Balay brow = row/bs; \ 9980c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 100ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10180c1aa95SSatish Balay bcol = col/bs; \ 10280c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 103ab26458aSBarry Smith low = 0; high = nrow; \ 104ab26458aSBarry Smith while (high-low > 3) { \ 105ab26458aSBarry Smith t = (low+high)/2; \ 106ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 107ab26458aSBarry Smith else low = t; \ 108ab26458aSBarry Smith } \ 109ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11080c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11180c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11280c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 113eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 114eada6651SSatish Balay else *bap = value; \ 115ac7a638eSSatish Balay goto a_noinsert; \ 11680c1aa95SSatish Balay } \ 11780c1aa95SSatish Balay } \ 11889280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 119d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 120fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12180c1aa95SSatish Balay N = nrow++ - 1; \ 12280c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 123580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\ 124580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 125580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 12680c1aa95SSatish Balay rp[_i] = bcol; \ 12780c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 128ac7a638eSSatish Balay a_noinsert:; \ 12980c1aa95SSatish Balay ailen[brow] = nrow; \ 13080c1aa95SSatish Balay } 13157b952d6SSatish Balay 132d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 133ac7a638eSSatish Balay { \ 134ac7a638eSSatish Balay brow = row/bs; \ 135ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 136ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 137ac7a638eSSatish Balay bcol = col/bs; \ 138ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 139ac7a638eSSatish Balay low = 0; high = nrow; \ 140ac7a638eSSatish Balay while (high-low > 3) { \ 141ac7a638eSSatish Balay t = (low+high)/2; \ 142ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 143ac7a638eSSatish Balay else low = t; \ 144ac7a638eSSatish Balay } \ 145ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 146ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 147ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 148ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 149ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 150ac7a638eSSatish Balay else *bap = value; \ 151ac7a638eSSatish Balay goto b_noinsert; \ 152ac7a638eSSatish Balay } \ 153ac7a638eSSatish Balay } \ 15489280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 155d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 156fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 157ac7a638eSSatish Balay N = nrow++ - 1; \ 158ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 159580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\ 160580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr);\ 161580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 162ac7a638eSSatish Balay rp[_i] = bcol; \ 163ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 164ac7a638eSSatish Balay b_noinsert:; \ 165ac7a638eSSatish Balay bilen[brow] = nrow; \ 166ac7a638eSSatish Balay } 167ac7a638eSSatish Balay 168b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 16957b952d6SSatish Balay { 17057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 17193fea6afSBarry Smith MatScalar value; 172ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 173dfbe8321SBarry Smith PetscErrorCode ierr; 174b24ad042SBarry Smith PetscInt i,j,row,col; 175d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 176d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 177d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 17857b952d6SSatish Balay 179eada6651SSatish Balay /* Some Variables required in the macro */ 18080c1aa95SSatish Balay Mat A = baij->A; 18180c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 182b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1833eda8832SBarry Smith MatScalar *aa =a->a; 184ac7a638eSSatish Balay 185ac7a638eSSatish Balay Mat B = baij->B; 186ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 187b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 1883eda8832SBarry Smith MatScalar *ba =b->a; 189ac7a638eSSatish Balay 190b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 191b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 1923eda8832SBarry Smith MatScalar *ap,*bap; 19380c1aa95SSatish Balay 194d64ed03dSBarry Smith PetscFunctionBegin; 19557b952d6SSatish Balay for (i=0; i<m; i++) { 1965ef9f2a5SBarry Smith if (im[i] < 0) continue; 1972515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 198e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 199639f9d9dSBarry Smith #endif 20057b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 20157b952d6SSatish Balay row = im[i] - rstart_orig; 20257b952d6SSatish Balay for (j=0; j<n; j++) { 20357b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 20457b952d6SSatish Balay col = in[j] - cstart_orig; 205db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 206db4deed7SKarl Rupp else value = v[i+j*m]; 207d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 20873959e64SBarry Smith } else if (in[j] < 0) continue; 2092515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 210660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 211639f9d9dSBarry Smith #endif 21257b952d6SSatish Balay else { 21357b952d6SSatish Balay if (mat->was_assembled) { 214905e6a2fSBarry Smith if (!baij->colmap) { 215ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 216905e6a2fSBarry Smith } 217aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2180f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 219bba1ac68SSatish Balay col = col - 1; 22048e59246SSatish Balay #else 221bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 22248e59246SSatish Balay #endif 223c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 224ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2258295de27SSatish Balay col = in[j]; 2269bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2279bf004c3SSatish Balay B = baij->B; 2289bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2299bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2309bf004c3SSatish Balay ba =b->a; 231c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 232c9ef50b2SBarry Smith else col += in[j]%bs; 2338295de27SSatish Balay } else col = in[j]; 234db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 235db4deed7SKarl Rupp else value = v[i+j*m]; 236d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 23790da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23857b952d6SSatish Balay } 23957b952d6SSatish Balay } 240d64ed03dSBarry Smith } else { 2414cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 24290f02eecSBarry Smith if (!baij->donotstash) { 2435080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 244ff2fd236SBarry Smith if (roworiented) { 245b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 246ff2fd236SBarry Smith } else { 247b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 24857b952d6SSatish Balay } 24957b952d6SSatish Balay } 25057b952d6SSatish Balay } 25190f02eecSBarry Smith } 2523a40ed3dSBarry Smith PetscFunctionReturn(0); 25357b952d6SSatish Balay } 25457b952d6SSatish Balay 2558ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 256880c6e6aSBarry Smith { 257880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2588ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 259880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 260880c6e6aSBarry Smith PetscErrorCode ierr; 2618ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 262880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 263880c6e6aSBarry Smith const PetscScalar *value = v; 264880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 265880c6e6aSBarry Smith 266880c6e6aSBarry Smith PetscFunctionBegin; 267880c6e6aSBarry Smith rp = aj + ai[row]; 268880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 269880c6e6aSBarry Smith rmax = imax[row]; 270880c6e6aSBarry Smith nrow = ailen[row]; 2718ab52850SBarry Smith value = v; 2728ab52850SBarry Smith low = 0; 2738ab52850SBarry Smith high = nrow; 274880c6e6aSBarry Smith while (high-low > 7) { 275880c6e6aSBarry Smith t = (low+high)/2; 276880c6e6aSBarry Smith if (rp[t] > col) high = t; 277880c6e6aSBarry Smith else low = t; 278880c6e6aSBarry Smith } 279880c6e6aSBarry Smith for (i=low; i<high; i++) { 280880c6e6aSBarry Smith if (rp[i] > col) break; 281880c6e6aSBarry Smith if (rp[i] == col) { 282880c6e6aSBarry Smith bap = ap + bs2*i; 283880c6e6aSBarry Smith if (roworiented) { 284880c6e6aSBarry Smith if (is == ADD_VALUES) { 2858ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 286880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 287880c6e6aSBarry Smith bap[jj] += *value++; 288880c6e6aSBarry Smith } 289880c6e6aSBarry Smith } 290880c6e6aSBarry Smith } else { 2918ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 292880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 293880c6e6aSBarry Smith bap[jj] = *value++; 294880c6e6aSBarry Smith } 295880c6e6aSBarry Smith } 296880c6e6aSBarry Smith } 297880c6e6aSBarry Smith } else { 298880c6e6aSBarry Smith if (is == ADD_VALUES) { 2998ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 300880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 301880c6e6aSBarry Smith bap[jj] += value[jj]; 302880c6e6aSBarry Smith } 303880c6e6aSBarry Smith bap += bs; 304880c6e6aSBarry Smith } 305880c6e6aSBarry Smith } else { 3068ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 307880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 308880c6e6aSBarry Smith bap[jj] = value[jj]; 309880c6e6aSBarry Smith } 310880c6e6aSBarry Smith bap += bs; 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith } 313880c6e6aSBarry Smith } 314880c6e6aSBarry Smith goto noinsert2; 315880c6e6aSBarry Smith } 316880c6e6aSBarry Smith } 317880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 318880c6e6aSBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 319880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 320880c6e6aSBarry Smith N = nrow++ - 1; high++; 321880c6e6aSBarry Smith /* shift up all the later entries in this row */ 322580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 323580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 324880c6e6aSBarry Smith rp[i] = col; 325880c6e6aSBarry Smith bap = ap + bs2*i; 326880c6e6aSBarry Smith if (roworiented) { 3278ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 328880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 329880c6e6aSBarry Smith bap[jj] = *value++; 330880c6e6aSBarry Smith } 331880c6e6aSBarry Smith } 332880c6e6aSBarry Smith } else { 3338ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 334880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 335880c6e6aSBarry Smith *bap++ = *value++; 336880c6e6aSBarry Smith } 337880c6e6aSBarry Smith } 338880c6e6aSBarry Smith } 339880c6e6aSBarry Smith noinsert2:; 340880c6e6aSBarry Smith ailen[row] = nrow; 341880c6e6aSBarry Smith PetscFunctionReturn(0); 342880c6e6aSBarry Smith } 343880c6e6aSBarry Smith 3448ab52850SBarry Smith /* 3458ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3468ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3478ab52850SBarry Smith */ 34897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 349ab26458aSBarry Smith { 350ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 351dd6ea824SBarry Smith const PetscScalar *value; 352f15d580aSBarry Smith MatScalar *barray = baij->barray; 353ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 354dfbe8321SBarry Smith PetscErrorCode ierr; 355899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 356899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 357d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 358ab26458aSBarry Smith 359b16ae2b1SBarry Smith PetscFunctionBegin; 36030793edcSSatish Balay if (!barray) { 361785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 36282502324SSatish Balay baij->barray = barray; 36330793edcSSatish Balay } 36430793edcSSatish Balay 36526fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 36626fbe8dcSKarl Rupp else stepval = (m-1)*bs; 36726fbe8dcSKarl Rupp 368ab26458aSBarry Smith for (i=0; i<m; i++) { 3695ef9f2a5SBarry Smith if (im[i] < 0) continue; 3702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 371bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 372ab26458aSBarry Smith #endif 373ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 374ab26458aSBarry Smith row = im[i] - rstart; 375ab26458aSBarry Smith for (j=0; j<n; j++) { 37615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 37715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 378f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 37915b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 380f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 38115b57d14SSatish Balay } else { /* Here a copy is required */ 382ab26458aSBarry Smith if (roworiented) { 38353ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 384ab26458aSBarry Smith } else { 38553ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 386abef11f7SSatish Balay } 38753ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 38826fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 38953ef36baSBarry Smith barray += bs; 39047513183SBarry Smith } 39130793edcSSatish Balay barray -= bs2; 39215b57d14SSatish Balay } 393abef11f7SSatish Balay 394abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 395abef11f7SSatish Balay col = in[j] - cstart; 3968ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 39726fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3982515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3998ab52850SBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 400ab26458aSBarry Smith #endif 401ab26458aSBarry Smith else { 402ab26458aSBarry Smith if (mat->was_assembled) { 403ab26458aSBarry Smith if (!baij->colmap) { 404ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 405ab26458aSBarry Smith } 406a5eb4965SSatish Balay 4072515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 408aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 409b24ad042SBarry Smith { PetscInt data; 4100f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 411e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 412fa46199cSSatish Balay } 41348e59246SSatish Balay #else 414e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 415a5eb4965SSatish Balay #endif 41648e59246SSatish Balay #endif 417aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4180f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 419fa46199cSSatish Balay col = (col - 1)/bs; 42048e59246SSatish Balay #else 421a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 42248e59246SSatish Balay #endif 4230e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 424ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 425ab26458aSBarry Smith col = in[j]; 426bb003d0fSBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]); 427db4deed7SKarl Rupp } else col = in[j]; 4288ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 429ab26458aSBarry Smith } 430ab26458aSBarry Smith } 431d64ed03dSBarry Smith } else { 432bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 433ab26458aSBarry Smith if (!baij->donotstash) { 434ff2fd236SBarry Smith if (roworiented) { 4356fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 436ff2fd236SBarry Smith } else { 4376fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 438ff2fd236SBarry Smith } 439abef11f7SSatish Balay } 440ab26458aSBarry Smith } 441ab26458aSBarry Smith } 4423a40ed3dSBarry Smith PetscFunctionReturn(0); 443ab26458aSBarry Smith } 4446fa18ffdSBarry Smith 4450bdbc534SSatish Balay #define HASH_KEY 0.6180339887 446b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 447b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 448b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 44997e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4500bdbc534SSatish Balay { 4510bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 452ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 453dfbe8321SBarry Smith PetscErrorCode ierr; 454b24ad042SBarry Smith PetscInt i,j,row,col; 455d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 456d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 457d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 458329f5518SBarry Smith PetscReal tmp; 4593eda8832SBarry Smith MatScalar **HD = baij->hd,value; 4602515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 461b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4624a15367fSSatish Balay #endif 4630bdbc534SSatish Balay 4640bdbc534SSatish Balay PetscFunctionBegin; 4650bdbc534SSatish Balay for (i=0; i<m; i++) { 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 468e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4690bdbc534SSatish Balay #endif 4700bdbc534SSatish Balay row = im[i]; 471c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4720bdbc534SSatish Balay for (j=0; j<n; j++) { 4730bdbc534SSatish Balay col = in[j]; 474db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 475db4deed7SKarl Rupp else value = v[i+j*m]; 476b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 477c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 478c2760754SSatish Balay h1 = HASH(size,key,tmp); 4790bdbc534SSatish Balay 480c2760754SSatish Balay 481c2760754SSatish Balay idx = h1; 4822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 483187ce0cbSSatish Balay insert_ct++; 484187ce0cbSSatish Balay total_ct++; 485187ce0cbSSatish Balay if (HT[idx] != key) { 486187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 487187ce0cbSSatish Balay if (idx == size) { 488187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 489f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 490187ce0cbSSatish Balay } 491187ce0cbSSatish Balay } 492187ce0cbSSatish Balay #else 493c2760754SSatish Balay if (HT[idx] != key) { 494c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 495c2760754SSatish Balay if (idx == size) { 496c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 497f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 498c2760754SSatish Balay } 499c2760754SSatish Balay } 500187ce0cbSSatish Balay #endif 501c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 502c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 503c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 5040bdbc534SSatish Balay } 50526fbe8dcSKarl Rupp } else if (!baij->donotstash) { 506ff2fd236SBarry Smith if (roworiented) { 507b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 508ff2fd236SBarry Smith } else { 509b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 5100bdbc534SSatish Balay } 5110bdbc534SSatish Balay } 5120bdbc534SSatish Balay } 5132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 514abf3b562SBarry Smith baij->ht_total_ct += total_ct; 515abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 516187ce0cbSSatish Balay #endif 5170bdbc534SSatish Balay PetscFunctionReturn(0); 5180bdbc534SSatish Balay } 5190bdbc534SSatish Balay 52097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5210bdbc534SSatish Balay { 5220bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 523ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 524dfbe8321SBarry Smith PetscErrorCode ierr; 525b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 526899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 527d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 528b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 529329f5518SBarry Smith PetscReal tmp; 5303eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 531dd6ea824SBarry Smith const PetscScalar *v_t,*value; 5322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 533b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5344a15367fSSatish Balay #endif 5350bdbc534SSatish Balay 536d0a41580SSatish Balay PetscFunctionBegin; 53726fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 53826fbe8dcSKarl Rupp else stepval = (m-1)*bs; 53926fbe8dcSKarl Rupp 5400bdbc534SSatish Balay for (i=0; i<m; i++) { 5412515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 542e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 543e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 5440bdbc534SSatish Balay #endif 5450bdbc534SSatish Balay row = im[i]; 546ab715e2cSSatish Balay v_t = v + i*nbs2; 547c2760754SSatish Balay if (row >= rstart && row < rend) { 5480bdbc534SSatish Balay for (j=0; j<n; j++) { 5490bdbc534SSatish Balay col = in[j]; 5500bdbc534SSatish Balay 5510bdbc534SSatish Balay /* Look up into the Hash Table */ 552c2760754SSatish Balay key = row*Nbs+col+1; 553c2760754SSatish Balay h1 = HASH(size,key,tmp); 5540bdbc534SSatish Balay 555c2760754SSatish Balay idx = h1; 5562515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 557187ce0cbSSatish Balay total_ct++; 558187ce0cbSSatish Balay insert_ct++; 559187ce0cbSSatish Balay if (HT[idx] != key) { 560187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 561187ce0cbSSatish Balay if (idx == size) { 562187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 563f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 564187ce0cbSSatish Balay } 565187ce0cbSSatish Balay } 566187ce0cbSSatish Balay #else 567c2760754SSatish Balay if (HT[idx] != key) { 568c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 569c2760754SSatish Balay if (idx == size) { 570c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 571f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 572c2760754SSatish Balay } 573c2760754SSatish Balay } 574187ce0cbSSatish Balay #endif 575c2760754SSatish Balay baij_a = HD[idx]; 5760bdbc534SSatish Balay if (roworiented) { 577c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 578187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 579187ce0cbSSatish Balay value = v_t; 580187ce0cbSSatish Balay v_t += bs; 581fef45726SSatish Balay if (addv == ADD_VALUES) { 582c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 583c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 584fef45726SSatish Balay baij_a[jj] += *value++; 585b4cc0f5aSSatish Balay } 586b4cc0f5aSSatish Balay } 587fef45726SSatish Balay } else { 588c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 589c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 590fef45726SSatish Balay baij_a[jj] = *value++; 591fef45726SSatish Balay } 592fef45726SSatish Balay } 593fef45726SSatish Balay } 5940bdbc534SSatish Balay } else { 5950bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 596fef45726SSatish Balay if (addv == ADD_VALUES) { 597b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5980bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 599fef45726SSatish Balay baij_a[jj] += *value++; 600fef45726SSatish Balay } 601fef45726SSatish Balay } 602fef45726SSatish Balay } else { 603fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 604fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 605fef45726SSatish Balay baij_a[jj] = *value++; 606fef45726SSatish Balay } 607b4cc0f5aSSatish Balay } 6080bdbc534SSatish Balay } 6090bdbc534SSatish Balay } 6100bdbc534SSatish Balay } 6110bdbc534SSatish Balay } else { 6120bdbc534SSatish Balay if (!baij->donotstash) { 6130bdbc534SSatish Balay if (roworiented) { 6148798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6150bdbc534SSatish Balay } else { 6168798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6170bdbc534SSatish Balay } 6180bdbc534SSatish Balay } 6190bdbc534SSatish Balay } 6200bdbc534SSatish Balay } 6212515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 622abf3b562SBarry Smith baij->ht_total_ct += total_ct; 623abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 624187ce0cbSSatish Balay #endif 6250bdbc534SSatish Balay PetscFunctionReturn(0); 6260bdbc534SSatish Balay } 627133cdb44SSatish Balay 628b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 629d6de1c52SSatish Balay { 630d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 6316849ba73SBarry Smith PetscErrorCode ierr; 632d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 633d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 634d6de1c52SSatish Balay 635133cdb44SSatish Balay PetscFunctionBegin; 636d6de1c52SSatish Balay for (i=0; i<m; i++) { 637e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 638e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 639d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 640d6de1c52SSatish Balay row = idxm[i] - bsrstart; 641d6de1c52SSatish Balay for (j=0; j<n; j++) { 642e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 643e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 644d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 645d6de1c52SSatish Balay col = idxn[j] - bscstart; 64698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647d64ed03dSBarry Smith } else { 648905e6a2fSBarry Smith if (!baij->colmap) { 649ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 650905e6a2fSBarry Smith } 651aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6520f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 653fa46199cSSatish Balay data--; 65448e59246SSatish Balay #else 65548e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 65648e59246SSatish Balay #endif 65748e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 658d9d09a02SSatish Balay else { 65948e59246SSatish Balay col = data + idxn[j]%bs; 66098dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 661d6de1c52SSatish Balay } 662d6de1c52SSatish Balay } 663d6de1c52SSatish Balay } 664f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 665d6de1c52SSatish Balay } 6663a40ed3dSBarry Smith PetscFunctionReturn(0); 667d6de1c52SSatish Balay } 668d6de1c52SSatish Balay 669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 670d6de1c52SSatish Balay { 671d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 672d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 673dfbe8321SBarry Smith PetscErrorCode ierr; 674d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 675329f5518SBarry Smith PetscReal sum = 0.0; 6763eda8832SBarry Smith MatScalar *v; 677d6de1c52SSatish Balay 678d64ed03dSBarry Smith PetscFunctionBegin; 679d6de1c52SSatish Balay if (baij->size == 1) { 680064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 681d6de1c52SSatish Balay } else { 682d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 683d6de1c52SSatish Balay v = amat->a; 6848a62d963SHong Zhang nz = amat->nz*bs2; 6858a62d963SHong Zhang for (i=0; i<nz; i++) { 686329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 687d6de1c52SSatish Balay } 688d6de1c52SSatish Balay v = bmat->a; 6898a62d963SHong Zhang nz = bmat->nz*bs2; 6908a62d963SHong Zhang for (i=0; i<nz; i++) { 691329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 692d6de1c52SSatish Balay } 693b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6948f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6958a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6968a62d963SHong Zhang PetscReal *tmp,*tmp2; 697899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 6988f8f2f0dSBarry Smith ierr = PetscCalloc1(mat->cmap->N,&tmp);CHKERRQ(ierr); 699857a15f1SBarry Smith ierr = PetscMalloc1(mat->cmap->N,&tmp2);CHKERRQ(ierr); 7008a62d963SHong Zhang v = amat->a; jj = amat->j; 7018a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 7028a62d963SHong Zhang for (j=0; j<bs; j++) { 7038a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 7048a62d963SHong Zhang for (row=0; row<bs; row++) { 7058a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7068a62d963SHong Zhang } 7078a62d963SHong Zhang } 7088a62d963SHong Zhang jj++; 7098a62d963SHong Zhang } 7108a62d963SHong Zhang v = bmat->a; jj = bmat->j; 7118a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 7128a62d963SHong Zhang for (j=0; j<bs; j++) { 7138a62d963SHong Zhang col = bs*garray[*jj] + j; 7148a62d963SHong Zhang for (row=0; row<bs; row++) { 7158a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7188a62d963SHong Zhang jj++; 7198a62d963SHong Zhang } 720b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7218a62d963SHong Zhang *nrm = 0.0; 722d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7238a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7248a62d963SHong Zhang } 725857a15f1SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 726857a15f1SBarry Smith ierr = PetscFree(tmp2);CHKERRQ(ierr); 7278a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 728577dd1f9SKris Buschelman PetscReal *sums; 729785e854fSJed Brown ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr); 7308a62d963SHong Zhang sum = 0.0; 7318a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7328a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7338a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7348a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7358a62d963SHong Zhang for (i=0; i<nz; i++) { 7368a62d963SHong Zhang for (col=0; col<bs; col++) { 7378a62d963SHong Zhang for (row=0; row<bs; row++) { 7388a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7398a62d963SHong Zhang } 7408a62d963SHong Zhang } 7418a62d963SHong Zhang } 7428a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7438a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7448a62d963SHong Zhang for (i=0; i<nz; i++) { 7458a62d963SHong Zhang for (col=0; col<bs; col++) { 7468a62d963SHong Zhang for (row=0; row<bs; row++) { 7478a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7488a62d963SHong Zhang } 7498a62d963SHong Zhang } 7508a62d963SHong Zhang } 7518a62d963SHong Zhang for (row=0; row<bs; row++) { 7528a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7538a62d963SHong Zhang } 7548a62d963SHong Zhang } 755b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 756577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 757ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 758d64ed03dSBarry Smith } 7593a40ed3dSBarry Smith PetscFunctionReturn(0); 760d6de1c52SSatish Balay } 76157b952d6SSatish Balay 762fef45726SSatish Balay /* 763fef45726SSatish Balay Creates the hash table, and sets the table 764fef45726SSatish Balay This table is created only once. 765fef45726SSatish Balay If new entried need to be added to the matrix 766fef45726SSatish Balay then the hash table has to be destroyed and 767fef45726SSatish Balay recreated. 768fef45726SSatish Balay */ 769dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 770596b8d2eSBarry Smith { 771596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 772596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 773596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 774b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7756849ba73SBarry Smith PetscErrorCode ierr; 776fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 777899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 778b24ad042SBarry Smith PetscInt *HT,key; 7793eda8832SBarry Smith MatScalar **HD; 780329f5518SBarry Smith PetscReal tmp; 7816cf91177SBarry Smith #if defined(PETSC_USE_INFO) 782b24ad042SBarry Smith PetscInt ct=0,max=0; 7834a15367fSSatish Balay #endif 784fef45726SSatish Balay 785d64ed03dSBarry Smith PetscFunctionBegin; 786fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 787fef45726SSatish Balay 788fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 789fca92195SBarry Smith ht_size = baij->ht_size; 7900bdbc534SSatish Balay 791fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7921795a4d1SJed Brown ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 793b9e4cc15SSatish Balay HD = baij->hd; 794a07cd24cSSatish Balay HT = baij->ht; 795b9e4cc15SSatish Balay 796596b8d2eSBarry Smith /* Loop Over A */ 7970bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 798596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7990bdbc534SSatish Balay row = i+rstart; 8000bdbc534SSatish Balay col = aj[j]+cstart; 801596b8d2eSBarry Smith 802187ce0cbSSatish Balay key = row*Nbs + col + 1; 803fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 804fca92195SBarry Smith for (k=0; k<ht_size; k++) { 805fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 806fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 807fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 808596b8d2eSBarry Smith break; 8096cf91177SBarry Smith #if defined(PETSC_USE_INFO) 810187ce0cbSSatish Balay } else { 811187ce0cbSSatish Balay ct++; 812187ce0cbSSatish Balay #endif 813596b8d2eSBarry Smith } 814187ce0cbSSatish Balay } 8156cf91177SBarry Smith #if defined(PETSC_USE_INFO) 816187ce0cbSSatish Balay if (k> max) max = k; 817187ce0cbSSatish Balay #endif 818596b8d2eSBarry Smith } 819596b8d2eSBarry Smith } 820596b8d2eSBarry Smith /* Loop Over B */ 8210bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 822596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8230bdbc534SSatish Balay row = i+rstart; 8240bdbc534SSatish Balay col = garray[bj[j]]; 825187ce0cbSSatish Balay key = row*Nbs + col + 1; 826fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 827fca92195SBarry Smith for (k=0; k<ht_size; k++) { 828fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 829fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 830fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 831596b8d2eSBarry Smith break; 8326cf91177SBarry Smith #if defined(PETSC_USE_INFO) 833187ce0cbSSatish Balay } else { 834187ce0cbSSatish Balay ct++; 835187ce0cbSSatish Balay #endif 836596b8d2eSBarry Smith } 837187ce0cbSSatish Balay } 8386cf91177SBarry Smith #if defined(PETSC_USE_INFO) 839187ce0cbSSatish Balay if (k> max) max = k; 840187ce0cbSSatish Balay #endif 841596b8d2eSBarry Smith } 842596b8d2eSBarry Smith } 843596b8d2eSBarry Smith 844596b8d2eSBarry Smith /* Print Summary */ 8456cf91177SBarry Smith #if defined(PETSC_USE_INFO) 846fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 84726fbe8dcSKarl Rupp if (HT[i]) j++; 848c38d4ed2SBarry Smith } 8491e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 850187ce0cbSSatish Balay #endif 8513a40ed3dSBarry Smith PetscFunctionReturn(0); 852596b8d2eSBarry Smith } 85357b952d6SSatish Balay 854dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 855bbb85fb3SSatish Balay { 856bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 857dfbe8321SBarry Smith PetscErrorCode ierr; 858b24ad042SBarry Smith PetscInt nstash,reallocs; 859bbb85fb3SSatish Balay 860bbb85fb3SSatish Balay PetscFunctionBegin; 86126fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 862bbb85fb3SSatish Balay 863d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8641e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8661e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 86746680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8681e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 869bbb85fb3SSatish Balay PetscFunctionReturn(0); 870bbb85fb3SSatish Balay } 871bbb85fb3SSatish Balay 872dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 873bbb85fb3SSatish Balay { 874bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 87591c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 8766849ba73SBarry Smith PetscErrorCode ierr; 877b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 878e44c0bd4SBarry Smith PetscInt *row,*col; 879ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8803eda8832SBarry Smith MatScalar *val; 881b24ad042SBarry Smith PetscMPIInt n; 882bbb85fb3SSatish Balay 883bbb85fb3SSatish Balay PetscFunctionBegin; 8845fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8854cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 886a2d1c673SSatish Balay while (1) { 8878798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 888a2d1c673SSatish Balay if (!flg) break; 889a2d1c673SSatish Balay 890bbb85fb3SSatish Balay for (i=0; i<n;) { 891bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 89226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 89326fbe8dcSKarl Rupp if (row[j] != rstart) break; 89426fbe8dcSKarl Rupp } 895bbb85fb3SSatish Balay if (j < n) ncols = j-i; 896bbb85fb3SSatish Balay else ncols = n-i; 897bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8984b4eb8d3SJed Brown ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 899bbb85fb3SSatish Balay i = j; 900bbb85fb3SSatish Balay } 901bbb85fb3SSatish Balay } 9028798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 903a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 904a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 905a2d1c673SSatish Balay restore the original flags */ 906a2d1c673SSatish Balay r1 = baij->roworiented; 907a2d1c673SSatish Balay r2 = a->roworiented; 90891c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 90926fbe8dcSKarl Rupp 9107c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9117c922b88SBarry Smith a->roworiented = PETSC_FALSE; 91226fbe8dcSKarl Rupp 91391c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 914a2d1c673SSatish Balay while (1) { 9158798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 916a2d1c673SSatish Balay if (!flg) break; 917a2d1c673SSatish Balay 918a2d1c673SSatish Balay for (i=0; i<n;) { 919a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92026fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 92126fbe8dcSKarl Rupp if (row[j] != rstart) break; 92226fbe8dcSKarl Rupp } 923a2d1c673SSatish Balay if (j < n) ncols = j-i; 924a2d1c673SSatish Balay else ncols = n-i; 9254b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 926a2d1c673SSatish Balay i = j; 927a2d1c673SSatish Balay } 928a2d1c673SSatish Balay } 9298798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 93026fbe8dcSKarl Rupp 931a2d1c673SSatish Balay baij->roworiented = r1; 932a2d1c673SSatish Balay a->roworiented = r2; 93326fbe8dcSKarl Rupp 93491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 935bbb85fb3SSatish Balay } 936bbb85fb3SSatish Balay 937bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 938bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 939bbb85fb3SSatish Balay 940bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 941bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 942bbb85fb3SSatish Balay /* 943bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 944bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 945bbb85fb3SSatish Balay */ 946bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 947b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 948bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 949ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 950bbb85fb3SSatish Balay } 951bbb85fb3SSatish Balay } 952bbb85fb3SSatish Balay 953bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 954bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 955bbb85fb3SSatish Balay } 956bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 957bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 958bbb85fb3SSatish Balay 9596cf91177SBarry Smith #if defined(PETSC_USE_INFO) 960bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 961abf3b562SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 96226fbe8dcSKarl Rupp 963bbb85fb3SSatish Balay baij->ht_total_ct = 0; 964bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 965bbb85fb3SSatish Balay } 966bbb85fb3SSatish Balay #endif 967bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 968bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 96926fbe8dcSKarl Rupp 970bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 971bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 972bbb85fb3SSatish Balay } 973bbb85fb3SSatish Balay 974fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 97526fbe8dcSKarl Rupp 976606d414cSSatish Balay baij->rowvalues = 0; 9774f9cfa9eSBarry Smith 9784f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9794f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 980e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 981b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 982e56f5c9eSBarry Smith } 983bbb85fb3SSatish Balay PetscFunctionReturn(0); 984bbb85fb3SSatish Balay } 98557b952d6SSatish Balay 9867da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9879804daf3SBarry Smith #include <petscdraw.h> 9886849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 98957b952d6SSatish Balay { 99057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 991dfbe8321SBarry Smith PetscErrorCode ierr; 9927da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 993d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 994ace3abfcSBarry Smith PetscBool iascii,isdraw; 995b0a32e0cSBarry Smith PetscViewer sviewer; 996f3ef73ceSBarry Smith PetscViewerFormat format; 99757b952d6SSatish Balay 998d64ed03dSBarry Smith PetscFunctionBegin; 999251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1000251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 100132077d6dSBarry Smith if (iascii) { 1002b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1003456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10044e220ebcSLois Curfman McInnes MatInfo info; 1005ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1006d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 10071575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 1008b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n", 1009b1e9c6f1SBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 1010d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1011e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 1012d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1013e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 1014b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 10151575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 101607d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 101757b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 10183a40ed3dSBarry Smith PetscFunctionReturn(0); 1019fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 102077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 10213a40ed3dSBarry Smith PetscFunctionReturn(0); 102204929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 102304929863SHong Zhang PetscFunctionReturn(0); 102457b952d6SSatish Balay } 102557b952d6SSatish Balay } 102657b952d6SSatish Balay 10270f5bd95cSBarry Smith if (isdraw) { 1028b0a32e0cSBarry Smith PetscDraw draw; 1029ace3abfcSBarry Smith PetscBool isnull; 1030b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 103145f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 103245f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 103357b952d6SSatish Balay } 103457b952d6SSatish Balay 10357da1fb6eSBarry Smith { 103657b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 103757b952d6SSatish Balay Mat A; 103857b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1039d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10403eda8832SBarry Smith MatScalar *a; 10413e219373SBarry Smith const char *matname; 104257b952d6SSatish Balay 1043f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1044f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 1045ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 104657b952d6SSatish Balay if (!rank) { 1047f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1048d64ed03dSBarry Smith } else { 1049f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 105057b952d6SSatish Balay } 1051f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 10520298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 10532b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 10543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 105557b952d6SSatish Balay 105657b952d6SSatish Balay /* copy over the A part */ 105757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 105857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1059785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 106057b952d6SSatish Balay 106157b952d6SSatish Balay for (i=0; i<mbs; i++) { 1062899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 106326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 106457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1065899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 106657b952d6SSatish Balay for (k=0; k<bs; k++) { 106797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1068cee3aa6bSSatish Balay col++; a += bs; 106957b952d6SSatish Balay } 107057b952d6SSatish Balay } 107157b952d6SSatish Balay } 107257b952d6SSatish Balay /* copy over the B part */ 107357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 107457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 107557b952d6SSatish Balay for (i=0; i<mbs; i++) { 1076899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 107726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 107857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 107957b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 108057b952d6SSatish Balay for (k=0; k<bs; k++) { 108197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1082cee3aa6bSSatish Balay col++; a += bs; 108357b952d6SSatish Balay } 108457b952d6SSatish Balay } 108557b952d6SSatish Balay } 1086606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10876d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10886d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 108955843e3eSBarry Smith /* 109055843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1091b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 109255843e3eSBarry Smith */ 10933f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 1094ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 10953e219373SBarry Smith if (!rank) { 1096ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 10977da1fb6eSBarry Smith ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 109857b952d6SSatish Balay } 10993f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 11001575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 11016bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 110257b952d6SSatish Balay } 11033a40ed3dSBarry Smith PetscFunctionReturn(0); 110457b952d6SSatish Balay } 110557b952d6SSatish Balay 1106618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1107b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1108660746e0SBarry Smith { 1109b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 1110b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)aij->A->data; 1111b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)aij->B->data; 1112b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1113b51a4376SLisandro Dalcin PetscInt header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l; 1114b51a4376SLisandro Dalcin PetscInt *rowlens,*colidxs; 1115b51a4376SLisandro Dalcin PetscScalar *matvals; 1116660746e0SBarry Smith PetscErrorCode ierr; 1117660746e0SBarry Smith 1118660746e0SBarry Smith PetscFunctionBegin; 1119b51a4376SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1120b51a4376SLisandro Dalcin 1121b51a4376SLisandro Dalcin M = mat->rmap->N; 1122b51a4376SLisandro Dalcin N = mat->cmap->N; 1123b51a4376SLisandro Dalcin m = mat->rmap->n; 1124b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1125b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1126b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1127b51a4376SLisandro Dalcin nz = bs*bs*(A->nz + B->nz); 1128b51a4376SLisandro Dalcin 1129b51a4376SLisandro Dalcin /* write matrix header */ 1130660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1131b51a4376SLisandro Dalcin header[1] = M; header[2] = N; header[3] = nz; 1132ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1133b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr); 1134660746e0SBarry Smith 1135b51a4376SLisandro Dalcin /* fill in and store row lengths */ 1136b51a4376SLisandro Dalcin ierr = PetscMalloc1(m,&rowlens);CHKERRQ(ierr); 1137b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1138b51a4376SLisandro Dalcin for (j=0; j<bs; j++) 1139b51a4376SLisandro Dalcin rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]); 1140b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT);CHKERRQ(ierr); 1141b51a4376SLisandro Dalcin ierr = PetscFree(rowlens);CHKERRQ(ierr); 1142660746e0SBarry Smith 1143b51a4376SLisandro Dalcin /* fill in and store column indices */ 1144b51a4376SLisandro Dalcin ierr = PetscMalloc1(nz,&colidxs);CHKERRQ(ierr); 1145b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1146b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1147b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1148b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1149b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1150b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1151660746e0SBarry Smith } 1152b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1153b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1154b51a4376SLisandro Dalcin colidxs[cnt++] = bs*A->j[ja] + l + cs; 1155b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1156b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1157b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1158660746e0SBarry Smith } 1159660746e0SBarry Smith } 1160660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1161b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT);CHKERRQ(ierr); 1162b51a4376SLisandro Dalcin ierr = PetscFree(colidxs);CHKERRQ(ierr); 1163660746e0SBarry Smith 1164b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 1165b51a4376SLisandro Dalcin ierr = PetscMalloc1(nz,&matvals);CHKERRQ(ierr); 1166b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1167b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1168b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1169b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1170b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1171b51a4376SLisandro Dalcin matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1172660746e0SBarry Smith } 1173b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1174b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1175b51a4376SLisandro Dalcin matvals[cnt++] = A->a[bs*(bs*ja + l) + k]; 1176b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1177b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1178*d21b9a37SPierre Jolivet matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1179660746e0SBarry Smith } 1180b51a4376SLisandro Dalcin } 1181b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR);CHKERRQ(ierr); 1182b51a4376SLisandro Dalcin ierr = PetscFree(matvals);CHKERRQ(ierr); 1183660746e0SBarry Smith 1184b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 1185b51a4376SLisandro Dalcin ierr = MatView_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr); 1186660746e0SBarry Smith PetscFunctionReturn(0); 1187660746e0SBarry Smith } 1188660746e0SBarry Smith 1189dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 119057b952d6SSatish Balay { 1191dfbe8321SBarry Smith PetscErrorCode ierr; 1192ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 119357b952d6SSatish Balay 1194d64ed03dSBarry Smith PetscFunctionBegin; 1195251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1196251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1197251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1198251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1199660746e0SBarry Smith if (iascii || isdraw || issocket) { 12007b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1201660746e0SBarry Smith } else if (isbinary) { 1202660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 120357b952d6SSatish Balay } 12043a40ed3dSBarry Smith PetscFunctionReturn(0); 120557b952d6SSatish Balay } 120657b952d6SSatish Balay 1207dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 120879bdfe76SSatish Balay { 120979bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1210dfbe8321SBarry Smith PetscErrorCode ierr; 121179bdfe76SSatish Balay 1212d64ed03dSBarry Smith PetscFunctionBegin; 1213aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1214d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 121579bdfe76SSatish Balay #endif 12168798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12178798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12186bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12196bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1220aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 12216bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 122248e59246SSatish Balay #else 122305b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 122448e59246SSatish Balay #endif 122505b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12266bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12276bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1228fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 122905b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1230fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1231899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1232bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1233901853e0SKris Buschelman 1234dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1235bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1236bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1237bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1238bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1239bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1240bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1241bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1242bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 12437ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12447ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr); 12457ea3e4caSstefano_zampini #endif 1246c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL);CHKERRQ(ierr); 12473a40ed3dSBarry Smith PetscFunctionReturn(0); 124879bdfe76SSatish Balay } 124979bdfe76SSatish Balay 1250dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1251cee3aa6bSSatish Balay { 1252cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1253dfbe8321SBarry Smith PetscErrorCode ierr; 1254b24ad042SBarry Smith PetscInt nt; 1255cee3aa6bSSatish Balay 1256d64ed03dSBarry Smith PetscFunctionBegin; 1257e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1258e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1259e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1260e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1261ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1262f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1263ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1264f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 12653a40ed3dSBarry Smith PetscFunctionReturn(0); 1266cee3aa6bSSatish Balay } 1267cee3aa6bSSatish Balay 1268dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1269cee3aa6bSSatish Balay { 1270cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1271dfbe8321SBarry Smith PetscErrorCode ierr; 1272d64ed03dSBarry Smith 1273d64ed03dSBarry Smith PetscFunctionBegin; 1274ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1275f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1276ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1277f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12783a40ed3dSBarry Smith PetscFunctionReturn(0); 1279cee3aa6bSSatish Balay } 1280cee3aa6bSSatish Balay 1281dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1282cee3aa6bSSatish Balay { 1283cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1284dfbe8321SBarry Smith PetscErrorCode ierr; 1285cee3aa6bSSatish Balay 1286d64ed03dSBarry Smith PetscFunctionBegin; 1287cee3aa6bSSatish Balay /* do nondiagonal part */ 12887c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1289cee3aa6bSSatish Balay /* do local part */ 12907c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1291e4a140f6SJunchao Zhang /* add partial results together */ 1292ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1293ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12943a40ed3dSBarry Smith PetscFunctionReturn(0); 1295cee3aa6bSSatish Balay } 1296cee3aa6bSSatish Balay 1297dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1298cee3aa6bSSatish Balay { 1299cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1300dfbe8321SBarry Smith PetscErrorCode ierr; 1301cee3aa6bSSatish Balay 1302d64ed03dSBarry Smith PetscFunctionBegin; 1303cee3aa6bSSatish Balay /* do nondiagonal part */ 13047c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1305cee3aa6bSSatish Balay /* do local part */ 13067c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1307e4a140f6SJunchao Zhang /* add partial results together */ 1308e4a140f6SJunchao Zhang ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1309ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 13103a40ed3dSBarry Smith PetscFunctionReturn(0); 1311cee3aa6bSSatish Balay } 1312cee3aa6bSSatish Balay 1313cee3aa6bSSatish Balay /* 1314cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1315cee3aa6bSSatish Balay diagonal block 1316cee3aa6bSSatish Balay */ 1317dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1318cee3aa6bSSatish Balay { 1319cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1320dfbe8321SBarry Smith PetscErrorCode ierr; 1321d64ed03dSBarry Smith 1322d64ed03dSBarry Smith PetscFunctionBegin; 1323e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13243a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13253a40ed3dSBarry Smith PetscFunctionReturn(0); 1326cee3aa6bSSatish Balay } 1327cee3aa6bSSatish Balay 1328f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1329cee3aa6bSSatish Balay { 1330cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1331dfbe8321SBarry Smith PetscErrorCode ierr; 1332d64ed03dSBarry Smith 1333d64ed03dSBarry Smith PetscFunctionBegin; 1334f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1335f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337cee3aa6bSSatish Balay } 1338026e39d0SSatish Balay 1339b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1340acdf5bf4SSatish Balay { 1341acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 134287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 13436849ba73SBarry Smith PetscErrorCode ierr; 1344d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1345d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1346899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1347acdf5bf4SSatish Balay 1348d64ed03dSBarry Smith PetscFunctionBegin; 1349e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1350e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1351acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1352acdf5bf4SSatish Balay 1353acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1354acdf5bf4SSatish Balay /* 1355acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1356acdf5bf4SSatish Balay */ 1357acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1358b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1359bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1360acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 136126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1362acdf5bf4SSatish Balay } 1363dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1364acdf5bf4SSatish Balay } 1365d9d09a02SSatish Balay lrow = row - brstart; 1366acdf5bf4SSatish Balay 1367acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1368acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1369acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1370f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1371f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1372acdf5bf4SSatish Balay nztot = nzA + nzB; 1373acdf5bf4SSatish Balay 1374acdf5bf4SSatish Balay cmap = mat->garray; 1375acdf5bf4SSatish Balay if (v || idx) { 1376acdf5bf4SSatish Balay if (nztot) { 1377acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1378b24ad042SBarry Smith PetscInt imark = -1; 1379acdf5bf4SSatish Balay if (v) { 1380acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1381acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1382d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1383acdf5bf4SSatish Balay else break; 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay imark = i; 1386acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1387acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1388acdf5bf4SSatish Balay } 1389acdf5bf4SSatish Balay if (idx) { 1390acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1391acdf5bf4SSatish Balay if (imark > -1) { 1392acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1393bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1394acdf5bf4SSatish Balay } 1395acdf5bf4SSatish Balay } else { 1396acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 139726fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1398acdf5bf4SSatish Balay else break; 1399acdf5bf4SSatish Balay } 1400acdf5bf4SSatish Balay imark = i; 1401acdf5bf4SSatish Balay } 1402d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1403d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1404acdf5bf4SSatish Balay } 1405d64ed03dSBarry Smith } else { 1406d212a18eSSatish Balay if (idx) *idx = 0; 1407d212a18eSSatish Balay if (v) *v = 0; 1408d212a18eSSatish Balay } 1409acdf5bf4SSatish Balay } 1410acdf5bf4SSatish Balay *nz = nztot; 1411f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1412f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14133a40ed3dSBarry Smith PetscFunctionReturn(0); 1414acdf5bf4SSatish Balay } 1415acdf5bf4SSatish Balay 1416b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1417acdf5bf4SSatish Balay { 1418acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1419d64ed03dSBarry Smith 1420d64ed03dSBarry Smith PetscFunctionBegin; 1421e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1422acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14233a40ed3dSBarry Smith PetscFunctionReturn(0); 1424acdf5bf4SSatish Balay } 1425acdf5bf4SSatish Balay 1426dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 142758667388SSatish Balay { 142858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1429dfbe8321SBarry Smith PetscErrorCode ierr; 1430d64ed03dSBarry Smith 1431d64ed03dSBarry Smith PetscFunctionBegin; 143258667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 143358667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14343a40ed3dSBarry Smith PetscFunctionReturn(0); 143558667388SSatish Balay } 14360ac07820SSatish Balay 1437dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14380ac07820SSatish Balay { 14394e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14404e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1441dfbe8321SBarry Smith PetscErrorCode ierr; 14423966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 14430ac07820SSatish Balay 1444d64ed03dSBarry Smith PetscFunctionBegin; 1445d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 144626fbe8dcSKarl Rupp 14474e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 144826fbe8dcSKarl Rupp 14490e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1450de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 145126fbe8dcSKarl Rupp 14524e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 145326fbe8dcSKarl Rupp 14540e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1455de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 145626fbe8dcSKarl Rupp 14570ac07820SSatish Balay if (flag == MAT_LOCAL) { 14584e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14594e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14604e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14614e220ebcSLois Curfman McInnes info->memory = isend[3]; 14624e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14630ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14643966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 146526fbe8dcSKarl Rupp 14664e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14674e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14684e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14694e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14704e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14710ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14723966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 147326fbe8dcSKarl Rupp 14744e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14754e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14764e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14774e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14784e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1479ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14804e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14814e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14824e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14833a40ed3dSBarry Smith PetscFunctionReturn(0); 14840ac07820SSatish Balay } 14850ac07820SSatish Balay 1486ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 148758667388SSatish Balay { 148858667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1489dfbe8321SBarry Smith PetscErrorCode ierr; 149058667388SSatish Balay 1491d64ed03dSBarry Smith PetscFunctionBegin; 149212c028f9SKris Buschelman switch (op) { 1493512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 149412c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 149528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1496a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 149712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 149843674050SBarry Smith MatCheckPreallocated(A,1); 14994e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15004e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 150112c028f9SKris Buschelman break; 150212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 150343674050SBarry Smith MatCheckPreallocated(A,1); 15044e0d8c25SBarry Smith a->roworiented = flg; 150526fbe8dcSKarl Rupp 15064e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15074e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 150812c028f9SKris Buschelman break; 15094e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1510071fcb05SBarry Smith case MAT_SORTED_FULL: 1511290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 151212c028f9SKris Buschelman break; 151312c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15144e0d8c25SBarry Smith a->donotstash = flg; 151512c028f9SKris Buschelman break; 151612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15174e0d8c25SBarry Smith a->ht_flag = flg; 1518abf3b562SBarry Smith a->ht_fact = 1.39; 151912c028f9SKris Buschelman break; 152077e54ba9SKris Buschelman case MAT_SYMMETRIC: 152177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15222188ac68SBarry Smith case MAT_HERMITIAN: 1523c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15242188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 152543674050SBarry Smith MatCheckPreallocated(A,1); 15264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 152777e54ba9SKris Buschelman break; 152812c028f9SKris Buschelman default: 1529ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1530d64ed03dSBarry Smith } 15313a40ed3dSBarry Smith PetscFunctionReturn(0); 153258667388SSatish Balay } 153358667388SSatish Balay 1534fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 15350ac07820SSatish Balay { 15360ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15370ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15380ac07820SSatish Balay Mat B; 1539dfbe8321SBarry Smith PetscErrorCode ierr; 1540d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1541d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 15423eda8832SBarry Smith MatScalar *a; 15430ac07820SSatish Balay 1544d64ed03dSBarry Smith PetscFunctionBegin; 1545cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 1546ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1547d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 15487adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 15492e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15500298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1551fc4dec0aSBarry Smith } else { 1552fc4dec0aSBarry Smith B = *matout; 1553fc4dec0aSBarry Smith } 15540ac07820SSatish Balay 15550ac07820SSatish Balay /* copy over the A part */ 15560ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15570ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1558785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 15590ac07820SSatish Balay 15600ac07820SSatish Balay for (i=0; i<mbs; i++) { 1561899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 156226fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15630ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1564899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 15650ac07820SSatish Balay for (k=0; k<bs; k++) { 156697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 156726fbe8dcSKarl Rupp 15680ac07820SSatish Balay col++; a += bs; 15690ac07820SSatish Balay } 15700ac07820SSatish Balay } 15710ac07820SSatish Balay } 15720ac07820SSatish Balay /* copy over the B part */ 15730ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15740ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15750ac07820SSatish Balay for (i=0; i<mbs; i++) { 1576899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 157726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15780ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15790ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15800ac07820SSatish Balay for (k=0; k<bs; k++) { 158197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 158226fbe8dcSKarl Rupp col++; 158326fbe8dcSKarl Rupp a += bs; 15840ac07820SSatish Balay } 15850ac07820SSatish Balay } 15860ac07820SSatish Balay } 1587606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15880ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15890ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15900ac07820SSatish Balay 1591cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 159226fbe8dcSKarl Rupp else { 159328be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 15940ac07820SSatish Balay } 15953a40ed3dSBarry Smith PetscFunctionReturn(0); 15960ac07820SSatish Balay } 15970e95ebc0SSatish Balay 1598dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15990e95ebc0SSatish Balay { 160036c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 160136c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1602dfbe8321SBarry Smith PetscErrorCode ierr; 1603b24ad042SBarry Smith PetscInt s1,s2,s3; 16040e95ebc0SSatish Balay 1605d64ed03dSBarry Smith PetscFunctionBegin; 160636c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 160736c4a09eSSatish Balay if (rr) { 160836c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1609e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 161036c4a09eSSatish Balay /* Overlap communication with computation. */ 1611ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 161236c4a09eSSatish Balay } 16130e95ebc0SSatish Balay if (ll) { 16140e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1615e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 16160298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16170e95ebc0SSatish Balay } 161836c4a09eSSatish Balay /* scale the diagonal block */ 161936c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 162036c4a09eSSatish Balay 162136c4a09eSSatish Balay if (rr) { 162236c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1623ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16240298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 162536c4a09eSSatish Balay } 16263a40ed3dSBarry Smith PetscFunctionReturn(0); 16270e95ebc0SSatish Balay } 16280e95ebc0SSatish Balay 16292b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16300ac07820SSatish Balay { 16310ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 163265a92638SMatthew G. Knepley PetscInt *lrows; 16336e520ac8SStefano Zampini PetscInt r, len; 163494342113SStefano Zampini PetscBool cong; 16356849ba73SBarry Smith PetscErrorCode ierr; 16360ac07820SSatish Balay 1637d64ed03dSBarry Smith PetscFunctionBegin; 16386e520ac8SStefano Zampini /* get locally owned rows */ 16396e520ac8SStefano Zampini ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr); 164097b48c8fSBarry Smith /* fix right hand side if needed */ 164197b48c8fSBarry Smith if (x && b) { 164265a92638SMatthew G. Knepley const PetscScalar *xx; 164365a92638SMatthew G. Knepley PetscScalar *bb; 164465a92638SMatthew G. Knepley 164597b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 164697b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 164765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 164897b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 164997b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 165097b48c8fSBarry Smith } 165197b48c8fSBarry Smith 16520ac07820SSatish Balay /* actually zap the local rows */ 165372dacd9aSBarry Smith /* 165472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1655a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 165672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 165772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 165872dacd9aSBarry Smith 165972dacd9aSBarry Smith */ 16609c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1661a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 166294342113SStefano Zampini ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr); 166394342113SStefano Zampini if ((diag != 0.0) && cong) { 1664a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr); 1665f4df32b1SMatthew Knepley } else if (diag != 0.0) { 166665a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1667e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1668512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 166965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 167065a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1671f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1672a07cd24cSSatish Balay } 1673a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1674a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16759c957beeSSatish Balay } else { 1676a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1677a07cd24cSSatish Balay } 1678606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 16794f9cfa9eSBarry Smith 16804f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16814f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1682e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1683b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1684e56f5c9eSBarry Smith } 16853a40ed3dSBarry Smith PetscFunctionReturn(0); 16860ac07820SSatish Balay } 168772dacd9aSBarry Smith 16886f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16896f0a72daSMatthew G. Knepley { 16906f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16916f0a72daSMatthew G. Knepley PetscErrorCode ierr; 1692131c27b5Sprj- PetscMPIInt n = A->rmap->n,p = 0; 1693131c27b5Sprj- PetscInt i,j,k,r,len = 0,row,col,count; 16946f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 16956f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16966f0a72daSMatthew G. Knepley PetscSF sf; 16976f0a72daSMatthew G. Knepley const PetscScalar *xx; 16986f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 16996f0a72daSMatthew G. Knepley Vec xmask,lmask; 17006f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 17016f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 17026f0a72daSMatthew G. Knepley PetscScalar *aa; 17036f0a72daSMatthew G. Knepley 17046f0a72daSMatthew G. Knepley PetscFunctionBegin; 17056f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 17066f0a72daSMatthew G. Knepley ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 17076f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 17086f0a72daSMatthew G. Knepley ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr); 17096f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 17106f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 17115ba17502SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 17125ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 17135ba17502SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 17145ba17502SJed Brown } 17156f0a72daSMatthew G. Knepley rrows[r].rank = p; 17166f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 17176f0a72daSMatthew G. Knepley } 17186f0a72daSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 17196f0a72daSMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 17206f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17216f0a72daSMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 17226f0a72daSMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 17236f0a72daSMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 17246f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17256f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 17266f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17276f0a72daSMatthew G. Knepley ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr); 17286f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 17292a7a6963SBarry Smith ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr); 17306f0a72daSMatthew G. Knepley ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr); 17316f0a72daSMatthew G. Knepley ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr); 17326f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 17336f0a72daSMatthew G. Knepley ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr); 17346f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17356f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17366f0a72daSMatthew G. Knepley ierr = VecDestroy(&xmask);CHKERRQ(ierr); 17376f0a72daSMatthew G. Knepley if (x) { 17386f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17396f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17406f0a72daSMatthew G. Knepley ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr); 17416f0a72daSMatthew G. Knepley ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 17426f0a72daSMatthew G. Knepley } 17436f0a72daSMatthew G. Knepley ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr); 17446f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17456f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17466f0a72daSMatthew G. Knepley row = lrows[i]; 17476f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 17486f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 17496f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17506f0a72daSMatthew G. Knepley aa[0] = 0.0; 17516f0a72daSMatthew G. Knepley aa += bs; 17526f0a72daSMatthew G. Knepley } 17536f0a72daSMatthew G. Knepley } 17546f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17556f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17566f0a72daSMatthew G. Knepley row = i/bs; 17576f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 17586f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17596f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 17606f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17616f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 176289ae1891SBarry Smith if (x) bb[i] -= aa[0]*xx[col]; 17636f0a72daSMatthew G. Knepley aa[0] = 0.0; 17646f0a72daSMatthew G. Knepley } 17656f0a72daSMatthew G. Knepley } 17666f0a72daSMatthew G. Knepley } 17676f0a72daSMatthew G. Knepley } 17686f0a72daSMatthew G. Knepley if (x) { 17696f0a72daSMatthew G. Knepley ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 17706f0a72daSMatthew G. Knepley ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr); 17716f0a72daSMatthew G. Knepley } 17726f0a72daSMatthew G. Knepley ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr); 17736f0a72daSMatthew G. Knepley ierr = VecDestroy(&lmask);CHKERRQ(ierr); 17746f0a72daSMatthew G. Knepley ierr = PetscFree(lrows);CHKERRQ(ierr); 17754f9cfa9eSBarry Smith 17764f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17774f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 17784f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1779b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17804f9cfa9eSBarry Smith } 17816f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17826f0a72daSMatthew G. Knepley } 17836f0a72daSMatthew G. Knepley 1784dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1785bb5a7306SBarry Smith { 1786bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1787dfbe8321SBarry Smith PetscErrorCode ierr; 1788d64ed03dSBarry Smith 1789d64ed03dSBarry Smith PetscFunctionBegin; 1790bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17913a40ed3dSBarry Smith PetscFunctionReturn(0); 1792bb5a7306SBarry Smith } 1793bb5a7306SBarry Smith 17946849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 17950ac07820SSatish Balay 1796ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 17977fc3c18eSBarry Smith { 17987fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17997fc3c18eSBarry Smith Mat a,b,c,d; 1800ace3abfcSBarry Smith PetscBool flg; 1801dfbe8321SBarry Smith PetscErrorCode ierr; 18027fc3c18eSBarry Smith 18037fc3c18eSBarry Smith PetscFunctionBegin; 18047fc3c18eSBarry Smith a = matA->A; b = matA->B; 18057fc3c18eSBarry Smith c = matB->A; d = matB->B; 18067fc3c18eSBarry Smith 18077fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1808abc0a331SBarry Smith if (flg) { 18097fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18107fc3c18eSBarry Smith } 1811b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 18127fc3c18eSBarry Smith PetscFunctionReturn(0); 18137fc3c18eSBarry Smith } 18147fc3c18eSBarry Smith 18153c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 18163c896bc6SHong Zhang { 18173c896bc6SHong Zhang PetscErrorCode ierr; 18183c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 18193c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 18203c896bc6SHong Zhang 18213c896bc6SHong Zhang PetscFunctionBegin; 18223c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18233c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18243c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 18253c896bc6SHong Zhang } else { 18263c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18273c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18283c896bc6SHong Zhang } 1829cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 18303c896bc6SHong Zhang PetscFunctionReturn(0); 18313c896bc6SHong Zhang } 1832273d9f13SBarry Smith 18334994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1834273d9f13SBarry Smith { 1835dfbe8321SBarry Smith PetscErrorCode ierr; 1836273d9f13SBarry Smith 1837273d9f13SBarry Smith PetscFunctionBegin; 1838535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1839273d9f13SBarry Smith PetscFunctionReturn(0); 1840273d9f13SBarry Smith } 1841273d9f13SBarry Smith 18424de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 18434de5dceeSHong Zhang { 1844001ddc4fSHong Zhang PetscErrorCode ierr; 1845001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 18464de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 18474de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 18484de5dceeSHong Zhang 18494de5dceeSHong Zhang PetscFunctionBegin; 1850001ddc4fSHong Zhang ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr); 18514de5dceeSHong Zhang PetscFunctionReturn(0); 18524de5dceeSHong Zhang } 18534de5dceeSHong Zhang 18544fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18554fe895cdSHong Zhang { 18564fe895cdSHong Zhang PetscErrorCode ierr; 18574fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 18584fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18594fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 1860b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs*Y->rmap->bs; 18614fe895cdSHong Zhang 18624fe895cdSHong Zhang PetscFunctionBegin; 18634fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18644fe895cdSHong Zhang PetscScalar alpha = a; 18654fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 18664fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 1867b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 18688b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18694fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 18704fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 1871b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 18728b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1873a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1874ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1875ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 18764fe895cdSHong Zhang } else { 18774de5dceeSHong Zhang Mat B; 18784de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18794de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 18804de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 18814de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 18824de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 18834de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 18844de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 18854de5dceeSHong Zhang ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr); 18864de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 18874de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 18884de5dceeSHong Zhang ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 18894de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18904de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 189128be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 18924de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 18934de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 18944fe895cdSHong Zhang } 18954fe895cdSHong Zhang PetscFunctionReturn(0); 18964fe895cdSHong Zhang } 18974fe895cdSHong Zhang 189899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 189999cafbc1SBarry Smith { 190099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 190199cafbc1SBarry Smith PetscErrorCode ierr; 190299cafbc1SBarry Smith 190399cafbc1SBarry Smith PetscFunctionBegin; 190499cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 190599cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 190699cafbc1SBarry Smith PetscFunctionReturn(0); 190799cafbc1SBarry Smith } 190899cafbc1SBarry Smith 190999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 191099cafbc1SBarry Smith { 191199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 191299cafbc1SBarry Smith PetscErrorCode ierr; 191399cafbc1SBarry Smith 191499cafbc1SBarry Smith PetscFunctionBegin; 191599cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 191699cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 191799cafbc1SBarry Smith PetscFunctionReturn(0); 191899cafbc1SBarry Smith } 191999cafbc1SBarry Smith 19207dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 19214aa3045dSJed Brown { 19224aa3045dSJed Brown PetscErrorCode ierr; 19234aa3045dSJed Brown IS iscol_local; 19244aa3045dSJed Brown PetscInt csize; 19254aa3045dSJed Brown 19264aa3045dSJed Brown PetscFunctionBegin; 19274aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1928b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1929b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1930e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1931b79d0421SJed Brown } else { 19324aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1933b79d0421SJed Brown } 19347dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1935b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1936b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 19376bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 1938b79d0421SJed Brown } 19394aa3045dSJed Brown PetscFunctionReturn(0); 19404aa3045dSJed Brown } 194117df9f7cSHong Zhang 194282094794SBarry Smith /* 194382094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 194482094794SBarry Smith in local and then by concatenating the local matrices the end result. 19457dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19468f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 194782094794SBarry Smith */ 19487dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 194982094794SBarry Smith { 195082094794SBarry Smith PetscErrorCode ierr; 195182094794SBarry Smith PetscMPIInt rank,size; 195282094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 1953c9ffca76SHong Zhang PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 195429dcf524SDmitry Karpeev Mat M,Mreuse; 195582094794SBarry Smith MatScalar *vwork,*aa; 1956ce94432eSBarry Smith MPI_Comm comm; 195729dcf524SDmitry Karpeev IS isrow_new, iscol_new; 195882094794SBarry Smith Mat_SeqBAIJ *aij; 195982094794SBarry Smith 196082094794SBarry Smith PetscFunctionBegin; 1961ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 196282094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 196382094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 196429dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 196529dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 196629dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 196729dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 196882094794SBarry Smith 196982094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 197082094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 1971e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 19727dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse);CHKERRQ(ierr); 197382094794SBarry Smith } else { 19747dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse);CHKERRQ(ierr); 197582094794SBarry Smith } 197629dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 197729dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 197882094794SBarry Smith /* 197982094794SBarry Smith m - number of local rows 198082094794SBarry Smith n - number of columns (same on all processors) 198182094794SBarry Smith rstart - first row in new global matrix generated 198282094794SBarry Smith */ 198382094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 198482094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 198582094794SBarry Smith m = m/bs; 198682094794SBarry Smith n = n/bs; 198782094794SBarry Smith 198882094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 198982094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 199082094794SBarry Smith ii = aij->i; 199182094794SBarry Smith jj = aij->j; 199282094794SBarry Smith 199382094794SBarry Smith /* 199482094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 199582094794SBarry Smith portions of the matrix in order to do correct preallocation 199682094794SBarry Smith */ 199782094794SBarry Smith 199882094794SBarry Smith /* first get start and end of "diagonal" columns */ 199982094794SBarry Smith if (csize == PETSC_DECIDE) { 200082094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 200182094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 200282094794SBarry Smith nlocal = m; 200382094794SBarry Smith } else { 200482094794SBarry Smith nlocal = n/size + ((n % size) > rank); 200582094794SBarry Smith } 200682094794SBarry Smith } else { 200782094794SBarry Smith nlocal = csize/bs; 200882094794SBarry Smith } 200982094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 201082094794SBarry Smith rstart = rend - nlocal; 201165e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 201282094794SBarry Smith 201382094794SBarry Smith /* next, compute all the lengths */ 2014dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 201582094794SBarry Smith for (i=0; i<m; i++) { 201682094794SBarry Smith jend = ii[i+1] - ii[i]; 201782094794SBarry Smith olen = 0; 201882094794SBarry Smith dlen = 0; 201982094794SBarry Smith for (j=0; j<jend; j++) { 202082094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 202182094794SBarry Smith else dlen++; 202282094794SBarry Smith jj++; 202382094794SBarry Smith } 202482094794SBarry Smith olens[i] = olen; 202582094794SBarry Smith dlens[i] = dlen; 202682094794SBarry Smith } 202782094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 202882094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 202982094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 203082094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 20318f46ffcaSHong Zhang ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2032eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 203382094794SBarry Smith } else { 203482094794SBarry Smith PetscInt ml,nl; 203582094794SBarry Smith 203682094794SBarry Smith M = *newmat; 203782094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2038e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 203982094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 204082094794SBarry Smith /* 204182094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 204282094794SBarry Smith rather than the slower MatSetValues(). 204382094794SBarry Smith */ 204482094794SBarry Smith M->was_assembled = PETSC_TRUE; 204582094794SBarry Smith M->assembled = PETSC_FALSE; 204682094794SBarry Smith } 204782094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 204882094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 204982094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 205082094794SBarry Smith ii = aij->i; 205182094794SBarry Smith jj = aij->j; 205282094794SBarry Smith aa = aij->a; 205382094794SBarry Smith for (i=0; i<m; i++) { 205482094794SBarry Smith row = rstart/bs + i; 205582094794SBarry Smith nz = ii[i+1] - ii[i]; 205682094794SBarry Smith cwork = jj; jj += nz; 205775f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 205882094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 205982094794SBarry Smith } 206082094794SBarry Smith 206182094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 206282094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 206382094794SBarry Smith *newmat = M; 206482094794SBarry Smith 206582094794SBarry Smith /* save submatrix used in processor for next request */ 206682094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 206782094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 206882094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 206982094794SBarry Smith } 207082094794SBarry Smith PetscFunctionReturn(0); 207182094794SBarry Smith } 207282094794SBarry Smith 207382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 207482094794SBarry Smith { 207582094794SBarry Smith MPI_Comm comm,pcomm; 2076a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 207782094794SBarry Smith const PetscInt *rows; 2078dbf0e21dSBarry Smith PetscMPIInt size; 2079a0a83eb5SRémi Lacroix IS crowp,lcolp; 208082094794SBarry Smith PetscErrorCode ierr; 208182094794SBarry Smith 208282094794SBarry Smith PetscFunctionBegin; 208382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 208482094794SBarry Smith /* make a collective version of 'rowp' */ 208582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 208682094794SBarry Smith if (pcomm==comm) { 208782094794SBarry Smith crowp = rowp; 208882094794SBarry Smith } else { 208982094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 209082094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 209170b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 209282094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 209382094794SBarry Smith } 2094a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2095a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 209682094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2097dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2098dbf0e21dSBarry Smith if (size==1) { 209982094794SBarry Smith lcolp = colp; 210082094794SBarry Smith } else { 210175f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 210282094794SBarry Smith } 2103dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 210475f6568bSJed Brown /* now we just get the submatrix */ 21057afc1a8bSJed Brown ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr); 21067dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2107a0a83eb5SRémi Lacroix /* clean up */ 2108a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2109a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2110a0a83eb5SRémi Lacroix } 2111dbf0e21dSBarry Smith if (size>1) { 21126bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 211382094794SBarry Smith } 211482094794SBarry Smith PetscFunctionReturn(0); 211582094794SBarry Smith } 211682094794SBarry Smith 21177087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 21188c7482ecSBarry Smith { 21198c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 21208c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 21218c7482ecSBarry Smith 21228c7482ecSBarry Smith PetscFunctionBegin; 212326fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 212426fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 21258c7482ecSBarry Smith PetscFunctionReturn(0); 21268c7482ecSBarry Smith } 21278c7482ecSBarry Smith 2128d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2129f6d58c54SBarry Smith { 2130f6d58c54SBarry Smith Mat B; 2131f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2132f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2133f6d58c54SBarry Smith Mat_SeqAIJ *b; 2134f6d58c54SBarry Smith PetscErrorCode ierr; 2135f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2136f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2137f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2138f6d58c54SBarry Smith 2139f6d58c54SBarry Smith PetscFunctionBegin; 2140ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2141ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2142f6d58c54SBarry Smith 2143f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2144f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2145f6d58c54SBarry Smith */ 2146854ce69bSBarry Smith ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr); 2147f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2148f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2149f6d58c54SBarry Smith } 2150785e854fSJed Brown ierr = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr); 2151f6d58c54SBarry Smith displs = recvcounts + size; 2152f6d58c54SBarry Smith for (i=0; i<size; i++) { 2153f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2154f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2155f6d58c54SBarry Smith } 2156f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2157ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2158f6d58c54SBarry Smith #else 21593d3eaba7SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2160ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2161f6d58c54SBarry Smith #endif 2162f6d58c54SBarry Smith /* --------------------------------------------------------------- 2163f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2164f6d58c54SBarry Smith */ 2165f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2166f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2167f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2168f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2169f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2170f6d58c54SBarry Smith 2171f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2172f6d58c54SBarry Smith Copy my part of matrix column indices over 2173f6d58c54SBarry Smith */ 2174f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2175f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2176f6d58c54SBarry Smith a_jsendbuf = ad->j; 2177f6d58c54SBarry Smith b_jsendbuf = bd->j; 2178f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2179f6d58c54SBarry Smith cnt = 0; 2180f6d58c54SBarry Smith for (i=0; i<n; i++) { 2181f6d58c54SBarry Smith 2182f6d58c54SBarry Smith /* put in lower diagonal portion */ 2183f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2184f6d58c54SBarry Smith while (m > 0) { 2185f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2186f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2187f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2188f6d58c54SBarry Smith m--; 2189f6d58c54SBarry Smith } 2190f6d58c54SBarry Smith 2191f6d58c54SBarry Smith /* put in diagonal portion */ 2192f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2193f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2194f6d58c54SBarry Smith } 2195f6d58c54SBarry Smith 2196f6d58c54SBarry Smith /* put in upper diagonal portion */ 2197f6d58c54SBarry Smith while (m-- > 0) { 2198f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2199f6d58c54SBarry Smith } 2200f6d58c54SBarry Smith } 2201e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2202f6d58c54SBarry Smith 2203f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2204f6d58c54SBarry Smith Gather all column indices to all processors 2205f6d58c54SBarry Smith */ 2206f6d58c54SBarry Smith for (i=0; i<size; i++) { 2207f6d58c54SBarry Smith recvcounts[i] = 0; 2208f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2209f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2210f6d58c54SBarry Smith } 2211f6d58c54SBarry Smith } 2212f6d58c54SBarry Smith displs[0] = 0; 2213f6d58c54SBarry Smith for (i=1; i<size; i++) { 2214f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2215f6d58c54SBarry Smith } 2216f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2217ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2218f6d58c54SBarry Smith #else 2219ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2220f6d58c54SBarry Smith #endif 2221f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2222f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2223f6d58c54SBarry Smith */ 2224f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2225580bdb30SBarry Smith ierr = PetscArraycpy(b->ilen,lens,A->rmap->N/bs);CHKERRQ(ierr); 2226f6d58c54SBarry Smith /* set the b->i indices */ 2227f6d58c54SBarry Smith b->i[0] = 0; 2228f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2229f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2230f6d58c54SBarry Smith } 2231f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2232f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2233f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2234f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2235f6d58c54SBarry Smith 2236f6d58c54SBarry Smith if (A->symmetric) { 2237f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2238f6d58c54SBarry Smith } else if (A->hermitian) { 2239f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2240f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2241f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2242f6d58c54SBarry Smith } 2243f6d58c54SBarry Smith *newmat = B; 2244f6d58c54SBarry Smith PetscFunctionReturn(0); 2245f6d58c54SBarry Smith } 2246f6d58c54SBarry Smith 2247b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2248b1a666ecSBarry Smith { 2249b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2250b1a666ecSBarry Smith PetscErrorCode ierr; 2251b1a666ecSBarry Smith Vec bb1 = 0; 2252b1a666ecSBarry Smith 2253b1a666ecSBarry Smith PetscFunctionBegin; 2254b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2255b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2256b1a666ecSBarry Smith PetscFunctionReturn(0); 2257b1a666ecSBarry Smith } 2258b1a666ecSBarry Smith 22594e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 22604e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 22614e980039SJed Brown } 22624e980039SJed Brown 2263b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2264b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2265b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2266b1a666ecSBarry Smith its--; 2267b1a666ecSBarry Smith } 2268b1a666ecSBarry Smith 2269b1a666ecSBarry Smith while (its--) { 2270b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2271b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2272b1a666ecSBarry Smith 2273b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2274b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2275b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2276b1a666ecSBarry Smith 2277b1a666ecSBarry Smith /* local sweep */ 2278b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2279b1a666ecSBarry Smith } 2280b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2281b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2282b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2283b1a666ecSBarry Smith its--; 2284b1a666ecSBarry Smith } 2285b1a666ecSBarry Smith while (its--) { 2286b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2287b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2288b1a666ecSBarry Smith 2289b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2290b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2291b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2292b1a666ecSBarry Smith 2293b1a666ecSBarry Smith /* local sweep */ 2294b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2295b1a666ecSBarry Smith } 2296b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2297b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2298b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2299b1a666ecSBarry Smith its--; 2300b1a666ecSBarry Smith } 2301b1a666ecSBarry Smith while (its--) { 2302b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2303b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2304b1a666ecSBarry Smith 2305b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2306b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2307b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2308b1a666ecSBarry Smith 2309b1a666ecSBarry Smith /* local sweep */ 2310b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2311b1a666ecSBarry Smith } 2312ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2313b1a666ecSBarry Smith 23146bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2315b1a666ecSBarry Smith PetscFunctionReturn(0); 2316b1a666ecSBarry Smith } 2317b1a666ecSBarry Smith 231847f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 231947f7623dSRémi Lacroix { 232047f7623dSRémi Lacroix PetscErrorCode ierr; 232147f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 232247f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 232347f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 232447f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 232547f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 232647f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 232747f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 232847f7623dSRémi Lacroix PetscReal *work; 232947f7623dSRémi Lacroix 233047f7623dSRémi Lacroix PetscFunctionBegin; 233147f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 23321795a4d1SJed Brown ierr = PetscCalloc1(N,&work);CHKERRQ(ierr); 233347f7623dSRémi Lacroix if (type == NORM_2) { 233447f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 233547f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 233647f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 233747f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 233847f7623dSRémi Lacroix a_val++; 233947f7623dSRémi Lacroix } 234047f7623dSRémi Lacroix } 234147f7623dSRémi Lacroix } 234247f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 234347f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 234447f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 234547f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 234647f7623dSRémi Lacroix b_val++; 234747f7623dSRémi Lacroix } 234847f7623dSRémi Lacroix } 234947f7623dSRémi Lacroix } 235047f7623dSRémi Lacroix } else if (type == NORM_1) { 235147f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 235247f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 235347f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 235447f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 235547f7623dSRémi Lacroix a_val++; 235647f7623dSRémi Lacroix } 235747f7623dSRémi Lacroix } 235847f7623dSRémi Lacroix } 235947f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 236047f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 236147f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 236247f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 236347f7623dSRémi Lacroix b_val++; 236447f7623dSRémi Lacroix } 236547f7623dSRémi Lacroix } 236647f7623dSRémi Lacroix } 236747f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 236847f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 236947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 237047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 237147f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 237247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 237347f7623dSRémi Lacroix a_val++; 237447f7623dSRémi Lacroix } 237547f7623dSRémi Lacroix } 237647f7623dSRémi Lacroix } 237747f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 237847f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 237947f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 238047f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 238147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 238247f7623dSRémi Lacroix b_val++; 238347f7623dSRémi Lacroix } 238447f7623dSRémi Lacroix } 238547f7623dSRémi Lacroix } 238647f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 238747f7623dSRémi Lacroix if (type == NORM_INFINITY) { 2388b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 238947f7623dSRémi Lacroix } else { 2390b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 239147f7623dSRémi Lacroix } 239247f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 239347f7623dSRémi Lacroix if (type == NORM_2) { 239447f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 239547f7623dSRémi Lacroix } 239647f7623dSRémi Lacroix PetscFunctionReturn(0); 239747f7623dSRémi Lacroix } 239847f7623dSRémi Lacroix 2399713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2400bbead8a2SBarry Smith { 2401bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2402bbead8a2SBarry Smith PetscErrorCode ierr; 2403bbead8a2SBarry Smith 2404bbead8a2SBarry Smith PetscFunctionBegin; 2405bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 24067b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 24077b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 24087b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2409bbead8a2SBarry Smith PetscFunctionReturn(0); 2410bbead8a2SBarry Smith } 2411bbead8a2SBarry Smith 24127d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 24137d68702bSBarry Smith { 24147d68702bSBarry Smith PetscErrorCode ierr; 24157d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 24166f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 24177d68702bSBarry Smith 24187d68702bSBarry Smith PetscFunctionBegin; 24196f33a894SBarry Smith if (!Y->preallocated) { 24207d68702bSBarry Smith ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 24216f33a894SBarry Smith } else if (!aij->nz) { 2422b83222d8SBarry Smith PetscInt nonew = aij->nonew; 24236f33a894SBarry Smith ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 2424b83222d8SBarry Smith aij->nonew = nonew; 24257d68702bSBarry Smith } 24267d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 24277d68702bSBarry Smith PetscFunctionReturn(0); 24287d68702bSBarry Smith } 24298c7482ecSBarry Smith 24303b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 24313b49f96aSBarry Smith { 24323b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 24333b49f96aSBarry Smith PetscErrorCode ierr; 24343b49f96aSBarry Smith 24353b49f96aSBarry Smith PetscFunctionBegin; 24363b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 24373b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 24383b49f96aSBarry Smith if (d) { 24393b49f96aSBarry Smith PetscInt rstart; 24403b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 24413b49f96aSBarry Smith *d += rstart/A->rmap->bs; 24423b49f96aSBarry Smith 24433b49f96aSBarry Smith } 24443b49f96aSBarry Smith PetscFunctionReturn(0); 24453b49f96aSBarry Smith } 24463b49f96aSBarry Smith 2447a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 2448a5b7ff6bSBarry Smith { 2449a5b7ff6bSBarry Smith PetscFunctionBegin; 2450a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 2451a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2452a5b7ff6bSBarry Smith } 2453a5b7ff6bSBarry Smith 245479bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24553964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2456cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2457cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2458cc2dc46cSBarry Smith MatMult_MPIBAIJ, 245997304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24607c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24617c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2462cc2dc46cSBarry Smith 0, 2463cc2dc46cSBarry Smith 0, 2464cc2dc46cSBarry Smith 0, 246597304618SKris Buschelman /*10*/ 0, 2466cc2dc46cSBarry Smith 0, 2467cc2dc46cSBarry Smith 0, 2468b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2469cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 247097304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24717fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2472cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2473cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2474cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 247597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2476cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2477cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2478cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2479d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2480cc2dc46cSBarry Smith 0, 2481cc2dc46cSBarry Smith 0, 2482cc2dc46cSBarry Smith 0, 2483cc2dc46cSBarry Smith 0, 24844994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2485273d9f13SBarry Smith 0, 2486cc2dc46cSBarry Smith 0, 2487a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2488cc2dc46cSBarry Smith 0, 2489d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2490cc2dc46cSBarry Smith 0, 2491cc2dc46cSBarry Smith 0, 2492cc2dc46cSBarry Smith 0, 2493cc2dc46cSBarry Smith 0, 2494d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24957dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2496cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2497cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24983c896bc6SHong Zhang MatCopy_MPIBAIJ, 2499d519adbfSMatthew Knepley /*44*/ 0, 2500cc2dc46cSBarry Smith MatScale_MPIBAIJ, 25017d68702bSBarry Smith MatShift_MPIBAIJ, 2502cc2dc46cSBarry Smith 0, 25036f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2504f73d5cc4SBarry Smith /*49*/ 0, 2505cc2dc46cSBarry Smith 0, 2506cc2dc46cSBarry Smith 0, 2507cc2dc46cSBarry Smith 0, 2508cc2dc46cSBarry Smith 0, 250993dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2510cc2dc46cSBarry Smith 0, 2511cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 251282094794SBarry Smith MatPermute_MPIBAIJ, 2513cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 25147dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2515f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2516f14a1c24SBarry Smith MatView_MPIBAIJ, 2517357abbc8SBarry Smith 0, 25187843d17aSBarry Smith 0, 2519d519adbfSMatthew Knepley /*64*/ 0, 25207843d17aSBarry Smith 0, 25217843d17aSBarry Smith 0, 25227843d17aSBarry Smith 0, 25237843d17aSBarry Smith 0, 2524d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 25257843d17aSBarry Smith 0, 252697304618SKris Buschelman 0, 252797304618SKris Buschelman 0, 252897304618SKris Buschelman 0, 2529d519adbfSMatthew Knepley /*74*/ 0, 2530f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 253197304618SKris Buschelman 0, 253297304618SKris Buschelman 0, 253397304618SKris Buschelman 0, 2534d519adbfSMatthew Knepley /*79*/ 0, 253597304618SKris Buschelman 0, 253697304618SKris Buschelman 0, 253797304618SKris Buschelman 0, 25385bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2539d519adbfSMatthew Knepley /*84*/ 0, 2540865e5f61SKris Buschelman 0, 2541865e5f61SKris Buschelman 0, 2542865e5f61SKris Buschelman 0, 2543865e5f61SKris Buschelman 0, 2544d519adbfSMatthew Knepley /*89*/ 0, 2545865e5f61SKris Buschelman 0, 2546865e5f61SKris Buschelman 0, 2547865e5f61SKris Buschelman 0, 2548865e5f61SKris Buschelman 0, 2549d519adbfSMatthew Knepley /*94*/ 0, 2550865e5f61SKris Buschelman 0, 2551865e5f61SKris Buschelman 0, 255299cafbc1SBarry Smith 0, 255399cafbc1SBarry Smith 0, 2554d519adbfSMatthew Knepley /*99*/ 0, 255599cafbc1SBarry Smith 0, 255699cafbc1SBarry Smith 0, 255799cafbc1SBarry Smith 0, 255899cafbc1SBarry Smith 0, 2559d519adbfSMatthew Knepley /*104*/0, 256099cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25618c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 25628c7482ecSBarry Smith 0, 25638c7482ecSBarry Smith 0, 2564d519adbfSMatthew Knepley /*109*/0, 25658c7482ecSBarry Smith 0, 25668c7482ecSBarry Smith 0, 25678c7482ecSBarry Smith 0, 25683b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2569d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 25708c7482ecSBarry Smith 0, 25714683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 25724683f7a4SShri Abhyankar 0, 25734683f7a4SShri Abhyankar 0, 25744683f7a4SShri Abhyankar /*119*/0, 25754683f7a4SShri Abhyankar 0, 25764683f7a4SShri Abhyankar 0, 2577bbead8a2SBarry Smith 0, 2578e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2579bbead8a2SBarry Smith /*124*/0, 258047f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 25813964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 25823964eb88SJed Brown 0, 25833964eb88SJed Brown 0, 25843964eb88SJed Brown /*129*/ 0, 25853964eb88SJed Brown 0, 25863964eb88SJed Brown 0, 25873964eb88SJed Brown 0, 25883964eb88SJed Brown 0, 25893964eb88SJed Brown /*134*/ 0, 25903964eb88SJed Brown 0, 25913964eb88SJed Brown 0, 25923964eb88SJed Brown 0, 25933964eb88SJed Brown 0, 259446533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2595f9426fe0SMark Adams 0, 25961919a2e2SJed Brown 0, 2597bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2598bdf6f3fcSHong Zhang 0, 2599bdf6f3fcSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ 26008c7482ecSBarry Smith }; 260179bdfe76SSatish Balay 260279bdfe76SSatish Balay 2603cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*); 2604c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 2605d94109b8SHong Zhang 2606cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2607aac34f13SBarry Smith { 2608b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 260937cd3c0dSBarry Smith PetscInt i,j,dlen,olen,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2610b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2611b8d659d7SLisandro Dalcin PetscScalar *values=0; 2612d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2613aac34f13SBarry Smith PetscErrorCode ierr; 26143bd0feecSPierre Jolivet PetscBool nooffprocentries; 2615aac34f13SBarry Smith 2616aac34f13SBarry Smith PetscFunctionBegin; 261726283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 261826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 261926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 262026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2621e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2622d0f46423SBarry Smith m = B->rmap->n/bs; 2623d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2624d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2625d0f46423SBarry Smith cend = B->cmap->rend/bs; 2626b8d659d7SLisandro Dalcin 2627e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2628dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2629aac34f13SBarry Smith for (i=0; i<m; i++) { 2630cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2631e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2632b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 263337cd3c0dSBarry Smith dlen = 0; 263437cd3c0dSBarry Smith olen = 0; 2635cf12db73SBarry Smith JJ = jj + ii[i]; 2636b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 263737cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 263837cd3c0dSBarry Smith else dlen++; 2639aac34f13SBarry Smith JJ++; 2640aac34f13SBarry Smith } 264137cd3c0dSBarry Smith d_nnz[i] = dlen; 264237cd3c0dSBarry Smith o_nnz[i] = olen; 2643aac34f13SBarry Smith } 2644aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2645fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2646aac34f13SBarry Smith 2647b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2648b8d659d7SLisandro Dalcin if (!values) { 264937cd3c0dSBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2650b8d659d7SLisandro Dalcin } 2651b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2652b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2653cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2654cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2655bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2656cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2657b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 26583adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26593adadaf3SJed Brown PetscInt j; 26603adadaf3SJed Brown for (j=0; j<ncols; j++) { 26613adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 26623adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 26633adadaf3SJed Brown } 26643adadaf3SJed Brown } 2665aac34f13SBarry Smith } 2666aac34f13SBarry Smith 2667b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 26683bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26693bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2670aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2671aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26723bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26733bd0feecSPierre Jolivet 26747827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2675aac34f13SBarry Smith PetscFunctionReturn(0); 2676aac34f13SBarry Smith } 2677aac34f13SBarry Smith 2678aac34f13SBarry Smith /*@C 2679664954b6SBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 2680aac34f13SBarry Smith 2681d083f849SBarry Smith Collective 2682aac34f13SBarry Smith 2683aac34f13SBarry Smith Input Parameters: 26841c4f3114SJed Brown + B - the matrix 2685dfb205c3SBarry Smith . bs - the block size 2686aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2687aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2688aac34f13SBarry Smith - v - optional values in the matrix 2689aac34f13SBarry Smith 2690664954b6SBarry Smith Level: advanced 2691aac34f13SBarry Smith 269295452b02SPatrick Sanan Notes: 269395452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26943adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26953adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26963adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26973adadaf3SJed Brown block column and the second index is over columns within a block. 26983adadaf3SJed Brown 2699664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2700664954b6SBarry Smith 27013adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2702aac34f13SBarry Smith @*/ 27037087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2704aac34f13SBarry Smith { 27054ac538c5SBarry Smith PetscErrorCode ierr; 2706aac34f13SBarry Smith 2707aac34f13SBarry Smith PetscFunctionBegin; 27086ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 27096ba663aaSJed Brown PetscValidType(B,1); 27106ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 27114ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2712aac34f13SBarry Smith PetscFunctionReturn(0); 2713aac34f13SBarry Smith } 2714aac34f13SBarry Smith 2715b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2716a23d5eceSKris Buschelman { 2717a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2718dfbe8321SBarry Smith PetscErrorCode ierr; 2719535b19f3SBarry Smith PetscInt i; 27205d2a9ed1SStefano Zampini PetscMPIInt size; 2721a23d5eceSKris Buschelman 2722a23d5eceSKris Buschelman PetscFunctionBegin; 272333d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 272426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 272526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2726e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2727899cda47SBarry Smith 2728a23d5eceSKris Buschelman if (d_nnz) { 2729d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2730e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2731a23d5eceSKris Buschelman } 2732a23d5eceSKris Buschelman } 2733a23d5eceSKris Buschelman if (o_nnz) { 2734d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2735e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2736a23d5eceSKris Buschelman } 2737a23d5eceSKris Buschelman } 2738a23d5eceSKris Buschelman 2739a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2740a23d5eceSKris Buschelman b->bs2 = bs*bs; 2741d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2742d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2743d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2744d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2745a23d5eceSKris Buschelman 2746a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2747d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2748a23d5eceSKris Buschelman } 2749d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2750d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2751d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2752d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2753a23d5eceSKris Buschelman 2754cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2755cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2756cb7b82ddSBarry Smith #else 2757cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2758cb7b82ddSBarry Smith #endif 2759cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2760cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2761cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2762cb7b82ddSBarry Smith 2763cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27645d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2765cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2766cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 27675d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2768cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2769cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2770cb7b82ddSBarry Smith 2771526dfc15SBarry Smith if (!B->preallocated) { 2772f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2773d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 27749c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 27753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2776ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2777526dfc15SBarry Smith } 2778a23d5eceSKris Buschelman 2779526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2780526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2781526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2782cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2783cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2784a23d5eceSKris Buschelman PetscFunctionReturn(0); 2785a23d5eceSKris Buschelman } 2786a23d5eceSKris Buschelman 27877087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 27887087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 27895bf65638SKris Buschelman 2790cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 279182094794SBarry Smith { 279282094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 279382094794SBarry Smith PetscErrorCode ierr; 279482094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 279582094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 279682094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 279782094794SBarry Smith 279882094794SBarry Smith PetscFunctionBegin; 2799854ce69bSBarry Smith ierr = PetscMalloc1(M+1,&ii);CHKERRQ(ierr); 280082094794SBarry Smith ii[0] = 0; 280182094794SBarry Smith for (i=0; i<M; i++) { 2802e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2803e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 280482094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 28055ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 28065ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 28075ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 28085ee9ba1cSJed Brown } 280982094794SBarry Smith } 2810785e854fSJed Brown ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr); 281182094794SBarry Smith cnt = 0; 281282094794SBarry Smith for (i=0; i<M; i++) { 281382094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 281482094794SBarry Smith if (garray[jo[j]] > rstart) break; 281582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 281682094794SBarry Smith } 281782094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 28185ee9ba1cSJed Brown if (jd[k] != i) { 281982094794SBarry Smith jj[cnt++] = rstart + jd[k]; 282082094794SBarry Smith } 28215ee9ba1cSJed Brown } 282282094794SBarry Smith for (; j<io[i+1]; j++) { 282382094794SBarry Smith jj[cnt++] = garray[jo[j]]; 282482094794SBarry Smith } 282582094794SBarry Smith } 2826ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 282782094794SBarry Smith PetscFunctionReturn(0); 282882094794SBarry Smith } 282982094794SBarry Smith 2830c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 283162471d69SBarry Smith 2832cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2833b2573a8aSBarry Smith 2834cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 283562471d69SBarry Smith { 283662471d69SBarry Smith PetscErrorCode ierr; 283762471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 283862471d69SBarry Smith Mat B; 283985a69837SSatish Balay Mat_MPIAIJ *b; 284062471d69SBarry Smith 284162471d69SBarry Smith PetscFunctionBegin; 2842ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 284362471d69SBarry Smith 28440f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28450f6d62edSLisandro Dalcin B = *newmat; 28460f6d62edSLisandro Dalcin } else { 2847ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 28486d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 2849f090d951SRémi Lacroix ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 2850f090d951SRémi Lacroix ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr); 28510298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 28520298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 28530f6d62edSLisandro Dalcin } 285462471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 285562471d69SBarry Smith 28560f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28570f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr); 28580f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr); 28590f6d62edSLisandro Dalcin } else { 28606bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 28616bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2862ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 286362471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 286462471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 28656a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28666a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28670f6d62edSLisandro Dalcin } 28680f6d62edSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28690f6d62edSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28700f6d62edSLisandro Dalcin 2871511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 287228be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 287362471d69SBarry Smith } else { 287462471d69SBarry Smith *newmat = B; 287562471d69SBarry Smith } 287662471d69SBarry Smith PetscFunctionReturn(0); 287762471d69SBarry Smith } 287862471d69SBarry Smith 28790bad9183SKris Buschelman /*MC 2880fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28810bad9183SKris Buschelman 28820bad9183SKris Buschelman Options Database Keys: 28838c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28848c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28858c07d4e3SBarry Smith - -mat_use_hash_table <fact> 28860bad9183SKris Buschelman 28870bad9183SKris Buschelman Level: beginner 28880cd7f59aSBarry Smith 28890cd7f59aSBarry Smith Notes: 28900cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 28910cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 28920bad9183SKris Buschelman 2893fd292e60Sprj- .seealso: MatCreateBAIJ 28940bad9183SKris Buschelman M*/ 28950bad9183SKris Buschelman 2896cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2897c0cdd4a1SDahai Guo 28988cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2899273d9f13SBarry Smith { 2900273d9f13SBarry Smith Mat_MPIBAIJ *b; 2901dfbe8321SBarry Smith PetscErrorCode ierr; 290294ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2903273d9f13SBarry Smith 2904273d9f13SBarry Smith PetscFunctionBegin; 2905b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 290682502324SSatish Balay B->data = (void*)b; 290782502324SSatish Balay 2908273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2909273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2910273d9f13SBarry Smith 2911273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2912ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2913ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2914273d9f13SBarry Smith 2915273d9f13SBarry Smith /* build local table of row and column ownerships */ 2916854ce69bSBarry Smith ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr); 2917273d9f13SBarry Smith 2918273d9f13SBarry Smith /* build cache for off array entries formed */ 2919ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 292026fbe8dcSKarl Rupp 2921273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 29220298fd71SBarry Smith b->colmap = NULL; 29230298fd71SBarry Smith b->garray = NULL; 2924273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2925273d9f13SBarry Smith 2926273d9f13SBarry Smith /* stuff used in block assembly */ 2927273d9f13SBarry Smith b->barray = 0; 2928273d9f13SBarry Smith 2929273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2930273d9f13SBarry Smith b->lvec = 0; 2931273d9f13SBarry Smith b->Mvctx = 0; 2932273d9f13SBarry Smith 2933273d9f13SBarry Smith /* stuff for MatGetRow() */ 2934273d9f13SBarry Smith b->rowindices = 0; 2935273d9f13SBarry Smith b->rowvalues = 0; 2936273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2937273d9f13SBarry Smith 2938273d9f13SBarry Smith /* hash table stuff */ 2939273d9f13SBarry Smith b->ht = 0; 2940273d9f13SBarry Smith b->hd = 0; 2941273d9f13SBarry Smith b->ht_size = 0; 2942273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2943273d9f13SBarry Smith b->ht_fact = 0; 2944273d9f13SBarry Smith b->ht_total_ct = 0; 2945273d9f13SBarry Smith b->ht_insert_ct = 0; 2946273d9f13SBarry Smith 29477dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29487a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29497a868f3eSHong Zhang 29508c07d4e3SBarry Smith 2951bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2952bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 2953bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 29547ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29557ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr); 29567ea3e4caSstefano_zampini #endif 2957bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2958bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2959bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2960bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 2961bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 2962bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2963c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr); 296417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 296594ae4db5SBarry Smith 296694ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 2967abf3b562SBarry Smith ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr); 296894ae4db5SBarry Smith if (flg) { 296994ae4db5SBarry Smith PetscReal fact = 1.39; 297094ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 297194ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 297294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 297394ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 297494ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 297594ae4db5SBarry Smith } 297694ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2977273d9f13SBarry Smith PetscFunctionReturn(0); 2978273d9f13SBarry Smith } 2979273d9f13SBarry Smith 2980209238afSKris Buschelman /*MC 2981002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2982209238afSKris Buschelman 2983209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2984209238afSKris Buschelman and MATMPIBAIJ otherwise. 2985209238afSKris Buschelman 2986209238afSKris Buschelman Options Database Keys: 2987209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2988209238afSKris Buschelman 2989209238afSKris Buschelman Level: beginner 2990209238afSKris Buschelman 299169b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2992209238afSKris Buschelman M*/ 2993209238afSKris Buschelman 2994273d9f13SBarry Smith /*@C 2995aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2996273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2997273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2998273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2999273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3000273d9f13SBarry Smith 3001273d9f13SBarry Smith Collective on Mat 3002273d9f13SBarry Smith 3003273d9f13SBarry Smith Input Parameters: 30041c4f3114SJed Brown + B - the matrix 3005bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3006bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 3007273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3008273d9f13SBarry Smith submatrix (same for all local rows) 3009273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3010273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 30110298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 301295742e49SBarry Smith set it even if it is zero. 3013273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3014273d9f13SBarry Smith submatrix (same for all local rows). 3015273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3016273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 30170298fd71SBarry Smith each block row) or NULL. 3018273d9f13SBarry Smith 301949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3020273d9f13SBarry Smith 3021273d9f13SBarry Smith Options Database Keys: 30228c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30238c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3024273d9f13SBarry Smith 3025273d9f13SBarry Smith Notes: 3026273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3027273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3028273d9f13SBarry Smith 3029273d9f13SBarry Smith Storage Information: 3030273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3031273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3032273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3033273d9f13SBarry Smith local matrix (a rectangular submatrix). 3034273d9f13SBarry Smith 3035273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3036273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 30370298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3038273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3039273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3040273d9f13SBarry Smith 3041273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3042273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3043273d9f13SBarry Smith 3044273d9f13SBarry Smith .vb 3045273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3046a4b1a0f6SJed Brown -------------------------- 3047273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3048273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3049273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3050a4b1a0f6SJed Brown -------------------------- 3051273d9f13SBarry Smith .ve 3052273d9f13SBarry Smith 3053273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3054273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3055273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3056273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3057273d9f13SBarry Smith 3058273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3059273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3060273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3061273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3062273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3063273d9f13SBarry Smith matrices. 3064273d9f13SBarry Smith 3065aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3066aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3067aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3068aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3069aa95bbe8SBarry Smith 3070273d9f13SBarry Smith Level: intermediate 3071273d9f13SBarry Smith 3072ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3073273d9f13SBarry Smith @*/ 30747087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3075273d9f13SBarry Smith { 30764ac538c5SBarry Smith PetscErrorCode ierr; 3077273d9f13SBarry Smith 3078273d9f13SBarry Smith PetscFunctionBegin; 30796ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30806ba663aaSJed Brown PetscValidType(B,1); 30816ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 30824ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3083273d9f13SBarry Smith PetscFunctionReturn(0); 3084273d9f13SBarry Smith } 3085273d9f13SBarry Smith 308679bdfe76SSatish Balay /*@C 308769b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 308879bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 308979bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 309079bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 309179bdfe76SSatish Balay performance can be increased by more than a factor of 50. 309279bdfe76SSatish Balay 3093d083f849SBarry Smith Collective 3094db81eaa0SLois Curfman McInnes 309579bdfe76SSatish Balay Input Parameters: 3096db81eaa0SLois Curfman McInnes + comm - MPI communicator 3097bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3098bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 309979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 310092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 310192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 310292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 310392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 310492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3105be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3106be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 310747a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 310879bdfe76SSatish Balay submatrix (same for all local rows) 310947a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 311092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 31110298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 311295742e49SBarry Smith and set it even if it is zero. 311347a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 311479bdfe76SSatish Balay submatrix (same for all local rows). 311547a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 311692e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 31170298fd71SBarry Smith each block row) or NULL. 311879bdfe76SSatish Balay 311979bdfe76SSatish Balay Output Parameter: 312079bdfe76SSatish Balay . A - the matrix 312179bdfe76SSatish Balay 3122db81eaa0SLois Curfman McInnes Options Database Keys: 31238c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31248c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31253ffaccefSLois Curfman McInnes 3126175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3127f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3128175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3129175b88e8SBarry Smith 3130b259b22eSLois Curfman McInnes Notes: 313149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 313249a6f317SBarry Smith 313347a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 313447a75d0bSBarry Smith 313579bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 313679bdfe76SSatish Balay (possibly both). 313779bdfe76SSatish Balay 3138be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3139be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3140be79a94dSBarry Smith 314179bdfe76SSatish Balay Storage Information: 314279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 314379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 314479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 314579bdfe76SSatish Balay local matrix (a rectangular submatrix). 314679bdfe76SSatish Balay 314779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 314879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31490298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 315079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 315179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 315279bdfe76SSatish Balay 315379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 315479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 315579bdfe76SSatish Balay 3156db81eaa0SLois Curfman McInnes .vb 3157db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3158a4b1a0f6SJed Brown -------------------------- 3159db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3160db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3161db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3162a4b1a0f6SJed Brown -------------------------- 3163db81eaa0SLois Curfman McInnes .ve 316479bdfe76SSatish Balay 316579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 316679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 316779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 316857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 316979bdfe76SSatish Balay 3170d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3171d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 317279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 317392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 317492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31756da5968aSLois Curfman McInnes matrices. 317679bdfe76SSatish Balay 3177027ccd11SLois Curfman McInnes Level: intermediate 3178027ccd11SLois Curfman McInnes 317969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 318079bdfe76SSatish Balay @*/ 318169b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 318279bdfe76SSatish Balay { 31836849ba73SBarry Smith PetscErrorCode ierr; 3184b24ad042SBarry Smith PetscMPIInt size; 318579bdfe76SSatish Balay 3186d64ed03dSBarry Smith PetscFunctionBegin; 3187f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3188f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3189d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3190273d9f13SBarry Smith if (size > 1) { 3191273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3192273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3193273d9f13SBarry Smith } else { 3194273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3195273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 31963914022bSBarry Smith } 31973a40ed3dSBarry Smith PetscFunctionReturn(0); 319879bdfe76SSatish Balay } 3199026e39d0SSatish Balay 32006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32010ac07820SSatish Balay { 32020ac07820SSatish Balay Mat mat; 32030ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3204dfbe8321SBarry Smith PetscErrorCode ierr; 3205b24ad042SBarry Smith PetscInt len=0; 32060ac07820SSatish Balay 3207d64ed03dSBarry Smith PetscFunctionBegin; 32080ac07820SSatish Balay *newmat = 0; 3209ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3210d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32117adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32127fff6886SHong Zhang 3213d5f3da31SBarry Smith mat->factortype = matin->factortype; 3214273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32150ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32167fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32177fff6886SHong Zhang 3218273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3219d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32200ac07820SSatish Balay a->bs2 = oldmat->bs2; 32210ac07820SSatish Balay a->mbs = oldmat->mbs; 32220ac07820SSatish Balay a->nbs = oldmat->nbs; 32230ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32240ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32250ac07820SSatish Balay 32261e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 32271e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3228899cda47SBarry Smith 32290ac07820SSatish Balay a->size = oldmat->size; 32300ac07820SSatish Balay a->rank = oldmat->rank; 3231aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3232aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3233aef5e8e0SSatish Balay a->rowindices = 0; 32340ac07820SSatish Balay a->rowvalues = 0; 32350ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 323630793edcSSatish Balay a->barray = 0; 3237899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3238899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3239899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3240899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32410ac07820SSatish Balay 3242133cdb44SSatish Balay /* hash table stuff */ 3243133cdb44SSatish Balay a->ht = 0; 3244133cdb44SSatish Balay a->hd = 0; 3245133cdb44SSatish Balay a->ht_size = 0; 3246133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 324725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3248133cdb44SSatish Balay a->ht_total_ct = 0; 3249133cdb44SSatish Balay a->ht_insert_ct = 0; 3250133cdb44SSatish Balay 3251580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1);CHKERRQ(ierr); 32520ac07820SSatish Balay if (oldmat->colmap) { 3253aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32540f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 325548e59246SSatish Balay #else 3256854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 32573bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3258580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 325948e59246SSatish Balay #endif 32600ac07820SSatish Balay } else a->colmap = 0; 32614beb1cfeSHong Zhang 32620ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3263785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 32643bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3265580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 32660ac07820SSatish Balay } else a->garray = 0; 32670ac07820SSatish Balay 3268ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 32690ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 32703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 32710ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 32723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 32737fff6886SHong Zhang 32742e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 32753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 32762e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 32773bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3278140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 32790ac07820SSatish Balay *newmat = mat; 32803a40ed3dSBarry Smith PetscFunctionReturn(0); 32810ac07820SSatish Balay } 328257b952d6SSatish Balay 3283618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3284b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 3285b51a4376SLisandro Dalcin { 3286b51a4376SLisandro Dalcin PetscInt header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k; 3287b51a4376SLisandro Dalcin PetscInt *rowidxs,*colidxs,rs,cs,ce; 3288b51a4376SLisandro Dalcin PetscScalar *matvals; 3289b51a4376SLisandro Dalcin PetscErrorCode ierr; 3290b51a4376SLisandro Dalcin 3291b51a4376SLisandro Dalcin PetscFunctionBegin; 3292b51a4376SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 3293b51a4376SLisandro Dalcin 3294b51a4376SLisandro Dalcin /* read in matrix header */ 3295b51a4376SLisandro Dalcin ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr); 3296b51a4376SLisandro Dalcin if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 3297b51a4376SLisandro Dalcin M = header[1]; N = header[2]; nz = header[3]; 3298b51a4376SLisandro Dalcin if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M); 3299b51a4376SLisandro Dalcin if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N); 3300b51a4376SLisandro Dalcin if (nz < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3301b51a4376SLisandro Dalcin 3302b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 3303b51a4376SLisandro Dalcin ierr = MatLoad_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr); 3304618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3305618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3306618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3307b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3308b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3309b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 3310b51a4376SLisandro Dalcin ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 3311b51a4376SLisandro Dalcin ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 3312b51a4376SLisandro Dalcin 3313b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 3314b51a4376SLisandro Dalcin ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr); 3315b51a4376SLisandro Dalcin if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%D, %D) than the input matrix (%D, %D)",M,N,rows,cols); 3316b51a4376SLisandro Dalcin ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 3317b51a4376SLisandro Dalcin ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 3318b51a4376SLisandro Dalcin ierr = PetscLayoutGetRange(mat->rmap,&rs,NULL); 3319b51a4376SLisandro Dalcin ierr = PetscLayoutGetRange(mat->cmap,&cs,&ce); 3320b51a4376SLisandro Dalcin mbs = m/bs; nbs = n/bs; 3321b51a4376SLisandro Dalcin 3322b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 3323b51a4376SLisandro Dalcin ierr = PetscMalloc1(m+1,&rowidxs);CHKERRQ(ierr); 3324b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT);CHKERRQ(ierr); 3325b51a4376SLisandro Dalcin rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i]; 3326b51a4376SLisandro Dalcin ierr = MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr); 3327b51a4376SLisandro Dalcin if (sum != nz) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %D, sum-row-lengths = %D\n",nz,sum); 3328b51a4376SLisandro Dalcin 3329b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 3330b51a4376SLisandro Dalcin ierr = PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals);CHKERRQ(ierr); 3331b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr); 3332b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr); 3333b51a4376SLisandro Dalcin 3334b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3335b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3336b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3337618cc2edSLisandro Dalcin PetscBool sbaij,done; 3338b51a4376SLisandro Dalcin PetscInt *d_nnz,*o_nnz; 3339b51a4376SLisandro Dalcin 3340b51a4376SLisandro Dalcin ierr = PetscBTCreate(nbs,&bt);CHKERRQ(ierr); 3341b51a4376SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 3342b51a4376SLisandro Dalcin ierr = PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz);CHKERRQ(ierr); 3343618cc2edSLisandro Dalcin ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij);CHKERRQ(ierr); 3344b51a4376SLisandro Dalcin for (i=0; i<mbs; i++) { 3345b51a4376SLisandro Dalcin ierr = PetscBTMemzero(nbs,bt);CHKERRQ(ierr); 3346b51a4376SLisandro Dalcin ierr = PetscHSetIClear(ht);CHKERRQ(ierr); 3347618cc2edSLisandro Dalcin for (k=0; k<bs; k++) { 3348618cc2edSLisandro Dalcin PetscInt row = bs*i + k; 3349618cc2edSLisandro Dalcin for (j=rowidxs[row]; j<rowidxs[row+1]; j++) { 3350618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3351618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3352618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3353618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++; 3354b51a4376SLisandro Dalcin } else { 3355618cc2edSLisandro Dalcin ierr = PetscHSetIQueryAdd(ht,col/bs,&done);CHKERRQ(ierr); 3356b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3357b51a4376SLisandro Dalcin } 3358b51a4376SLisandro Dalcin } 3359618cc2edSLisandro Dalcin } 3360618cc2edSLisandro Dalcin } 3361618cc2edSLisandro Dalcin } 3362b51a4376SLisandro Dalcin ierr = PetscBTDestroy(&bt);CHKERRQ(ierr); 3363b51a4376SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 3364b51a4376SLisandro Dalcin ierr = MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 3365618cc2edSLisandro Dalcin ierr = MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 3366b51a4376SLisandro Dalcin ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 3367b51a4376SLisandro Dalcin } 3368b51a4376SLisandro Dalcin 3369b51a4376SLisandro Dalcin /* store matrix values */ 3370b51a4376SLisandro Dalcin for (i=0; i<m; i++) { 3371b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1]; 3372618cc2edSLisandro Dalcin ierr = (*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES);CHKERRQ(ierr); 3373b51a4376SLisandro Dalcin } 3374b51a4376SLisandro Dalcin 3375b51a4376SLisandro Dalcin ierr = PetscFree(rowidxs);CHKERRQ(ierr); 3376b51a4376SLisandro Dalcin ierr = PetscFree2(colidxs,matvals);CHKERRQ(ierr); 3377b51a4376SLisandro Dalcin ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3378b51a4376SLisandro Dalcin ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3379b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3380b51a4376SLisandro Dalcin } 3381b51a4376SLisandro Dalcin 3382b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer) 33834683f7a4SShri Abhyankar { 33844683f7a4SShri Abhyankar PetscErrorCode ierr; 33857f489da9SVaclav Hapla PetscBool isbinary; 33864683f7a4SShri Abhyankar 33874683f7a4SShri Abhyankar PetscFunctionBegin; 33887f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 3389b51a4376SLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 3390b51a4376SLisandro Dalcin ierr = MatLoad_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 33914683f7a4SShri Abhyankar PetscFunctionReturn(0); 33924683f7a4SShri Abhyankar } 33934683f7a4SShri Abhyankar 3394133cdb44SSatish Balay /*@ 3395133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3396133cdb44SSatish Balay 3397133cdb44SSatish Balay Input Parameters: 3398a2b725a8SWilliam Gropp + mat - the matrix 3399a2b725a8SWilliam Gropp - fact - factor 3400133cdb44SSatish Balay 3401c5eb9154SBarry Smith Not Collective, each process can use a different factor 3402fee21e36SBarry Smith 34038c890885SBarry Smith Level: advanced 34048c890885SBarry Smith 3405133cdb44SSatish Balay Notes: 34068c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3407133cdb44SSatish Balay 3408133cdb44SSatish Balay .seealso: MatSetOption() 3409133cdb44SSatish Balay @*/ 34107087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3411133cdb44SSatish Balay { 34124ac538c5SBarry Smith PetscErrorCode ierr; 34135bf65638SKris Buschelman 34145bf65638SKris Buschelman PetscFunctionBegin; 34154ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 34165bf65638SKris Buschelman PetscFunctionReturn(0); 34175bf65638SKris Buschelman } 34185bf65638SKris Buschelman 34197087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 34205bf65638SKris Buschelman { 342125fdafccSSatish Balay Mat_MPIBAIJ *baij; 3422133cdb44SSatish Balay 3423133cdb44SSatish Balay PetscFunctionBegin; 3424133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3425133cdb44SSatish Balay baij->ht_fact = fact; 3426133cdb44SSatish Balay PetscFunctionReturn(0); 3427133cdb44SSatish Balay } 3428f2a5309cSSatish Balay 34299230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3430f2a5309cSSatish Balay { 3431f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 3432ab4d48faSStefano Zampini PetscBool flg; 3433ab4d48faSStefano Zampini PetscErrorCode ierr; 34345fd66863SKarl Rupp 3435f2a5309cSSatish Balay PetscFunctionBegin; 3436ab4d48faSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg);CHKERRQ(ierr); 3437ab4d48faSStefano Zampini if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input"); 343821e72a00SBarry Smith if (Ad) *Ad = a->A; 343921e72a00SBarry Smith if (Ao) *Ao = a->B; 344021e72a00SBarry Smith if (colmap) *colmap = a->garray; 3441f2a5309cSSatish Balay PetscFunctionReturn(0); 3442f2a5309cSSatish Balay } 344385535b8eSBarry Smith 344485535b8eSBarry Smith /* 344585535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 344685535b8eSBarry Smith */ 344785535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 344885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 344985535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 345085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 345185535b8eSBarry Smith #endif 345285535b8eSBarry Smith 345385535b8eSBarry Smith /*@C 345485535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 345585535b8eSBarry Smith 345685535b8eSBarry Smith Collective on Mat 345785535b8eSBarry Smith 345885535b8eSBarry Smith Input Parameters: 345985535b8eSBarry Smith + mat - the matrix 346085535b8eSBarry Smith . min - number of input rows 346185535b8eSBarry Smith . im - input rows 346285535b8eSBarry Smith . nin - number of input columns 346385535b8eSBarry Smith . in - input columns 346485535b8eSBarry Smith . v - numerical values input 346585535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 346685535b8eSBarry Smith 346795452b02SPatrick Sanan Notes: 346895452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 346985535b8eSBarry Smith 347085535b8eSBarry Smith Level: advanced 347185535b8eSBarry Smith 347285535b8eSBarry Smith .seealso: MatSetValuesBlocked() 347385535b8eSBarry Smith @*/ 347485535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 347585535b8eSBarry Smith { 347685535b8eSBarry Smith /* convert input arguments to C version */ 347785535b8eSBarry Smith Mat mat = *matin; 347885535b8eSBarry Smith PetscInt m = *min, n = *nin; 347985535b8eSBarry Smith InsertMode addv = *addvin; 348085535b8eSBarry Smith 348185535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 348285535b8eSBarry Smith const MatScalar *value; 348385535b8eSBarry Smith MatScalar *barray = baij->barray; 3484ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 348585535b8eSBarry Smith PetscErrorCode ierr; 348685535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 348785535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3488d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 348985535b8eSBarry Smith 349085535b8eSBarry Smith PetscFunctionBegin; 349185535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 349226fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 349385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3494e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3495e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 349685535b8eSBarry Smith #endif 349785535b8eSBarry Smith if (mat->assembled) { 349885535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 349985535b8eSBarry Smith mat->assembled = PETSC_FALSE; 350085535b8eSBarry Smith } 350185535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 350285535b8eSBarry Smith 350385535b8eSBarry Smith 350485535b8eSBarry Smith if (!barray) { 3505785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 350685535b8eSBarry Smith baij->barray = barray; 350785535b8eSBarry Smith } 350885535b8eSBarry Smith 350926fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 351026fbe8dcSKarl Rupp else stepval = (m-1)*bs; 351126fbe8dcSKarl Rupp 351285535b8eSBarry Smith for (i=0; i<m; i++) { 351385535b8eSBarry Smith if (im[i] < 0) continue; 351485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3515e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 351685535b8eSBarry Smith #endif 351785535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 351885535b8eSBarry Smith row = im[i] - rstart; 351985535b8eSBarry Smith for (j=0; j<n; j++) { 352085535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 352185535b8eSBarry Smith if ((roworiented) && (n == 1)) { 352285535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 352385535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 352485535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 352585535b8eSBarry Smith } else { /* Here a copy is required */ 352685535b8eSBarry Smith if (roworiented) { 352785535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 352885535b8eSBarry Smith } else { 352985535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 353085535b8eSBarry Smith } 353185535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 353285535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 353385535b8eSBarry Smith *barray++ = *value++; 353485535b8eSBarry Smith } 353585535b8eSBarry Smith } 353685535b8eSBarry Smith barray -=bs2; 353785535b8eSBarry Smith } 353885535b8eSBarry Smith 353985535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 354085535b8eSBarry Smith col = in[j] - cstart; 35418ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 354226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 354385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3544cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 354585535b8eSBarry Smith #endif 354685535b8eSBarry Smith else { 354785535b8eSBarry Smith if (mat->was_assembled) { 354885535b8eSBarry Smith if (!baij->colmap) { 3549ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 355085535b8eSBarry Smith } 355185535b8eSBarry Smith 355285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 355385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 355485535b8eSBarry Smith { PetscInt data; 355585535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3556e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 355785535b8eSBarry Smith } 355885535b8eSBarry Smith #else 3559e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 356085535b8eSBarry Smith #endif 356185535b8eSBarry Smith #endif 356285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 356385535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 356485535b8eSBarry Smith col = (col - 1)/bs; 356585535b8eSBarry Smith #else 356685535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 356785535b8eSBarry Smith #endif 356885535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3569ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357085535b8eSBarry Smith col = in[j]; 357185535b8eSBarry Smith } 357226fbe8dcSKarl Rupp } else col = in[j]; 35738ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 357485535b8eSBarry Smith } 357585535b8eSBarry Smith } 357685535b8eSBarry Smith } else { 357785535b8eSBarry Smith if (!baij->donotstash) { 357885535b8eSBarry Smith if (roworiented) { 357985535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 358085535b8eSBarry Smith } else { 358185535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 358285535b8eSBarry Smith } 358385535b8eSBarry Smith } 358485535b8eSBarry Smith } 358585535b8eSBarry Smith } 358685535b8eSBarry Smith 358785535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 358885535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 358985535b8eSBarry Smith PetscFunctionReturn(0); 359085535b8eSBarry Smith } 3591dfb205c3SBarry Smith 3592dfb205c3SBarry Smith /*@ 3593483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3594dfb205c3SBarry Smith CSR format the local rows. 3595dfb205c3SBarry Smith 3596d083f849SBarry Smith Collective 3597dfb205c3SBarry Smith 3598dfb205c3SBarry Smith Input Parameters: 3599dfb205c3SBarry Smith + comm - MPI communicator 3600dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3601dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3602dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3603dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3604dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3605dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3606dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3607483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3608dfb205c3SBarry Smith . j - column indices 3609dfb205c3SBarry Smith - a - matrix values 3610dfb205c3SBarry Smith 3611dfb205c3SBarry Smith Output Parameter: 3612dfb205c3SBarry Smith . mat - the matrix 3613dfb205c3SBarry Smith 3614dfb205c3SBarry Smith Level: intermediate 3615dfb205c3SBarry Smith 3616dfb205c3SBarry Smith Notes: 3617dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3618dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3619dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3620dfb205c3SBarry Smith 36213adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 36223adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 36233adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 36243adadaf3SJed Brown with column-major ordering within blocks. 36253adadaf3SJed Brown 3626dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3627dfb205c3SBarry Smith 3628dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 362969b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3630dfb205c3SBarry Smith @*/ 36317087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3632dfb205c3SBarry Smith { 3633dfb205c3SBarry Smith PetscErrorCode ierr; 3634dfb205c3SBarry Smith 3635dfb205c3SBarry Smith PetscFunctionBegin; 3636f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3637dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3638dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3639dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 36409a43d2d5SJed Brown ierr = MatSetType(*mat,MATMPIBAIJ);CHKERRQ(ierr); 364127f91139SJed Brown ierr = MatSetBlockSize(*mat,bs);CHKERRQ(ierr); 364227f91139SJed Brown ierr = MatSetUp(*mat);CHKERRQ(ierr); 3643d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3644dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3645d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3646dfb205c3SBarry Smith PetscFunctionReturn(0); 3647dfb205c3SBarry Smith } 3648e561ad89SHong Zhang 3649bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3650e561ad89SHong Zhang { 3651e561ad89SHong Zhang PetscErrorCode ierr; 3652bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 3653bd153df0SHong Zhang PetscInt *indx; 3654bd153df0SHong Zhang PetscScalar *values; 3655e561ad89SHong Zhang 3656e561ad89SHong Zhang PetscFunctionBegin; 3657e561ad89SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 3658bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3659bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 36602c6ba4edSHong Zhang PetscInt *dnz,*onz,mbs,Nbs,nbs; 3661bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 366277f764caSHong Zhang PetscMPIInt rank,size; 3663e561ad89SHong Zhang 3664bd153df0SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3665bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 3666bd153df0SHong Zhang if (n == PETSC_DECIDE) { 3667da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 3668bd153df0SHong Zhang } 3669da91a574SPierre Jolivet nbs = n/cbs; 3670e561ad89SHong Zhang 3671647a6520SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 367277f764caSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 367377f764caSHong Zhang 367477f764caSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 367577f764caSHong Zhang ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 367677f764caSHong Zhang if (rank == size-1) { 367777f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36782c6ba4edSHong Zhang if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 367977f764caSHong Zhang } 368077f764caSHong Zhang 368177f764caSHong Zhang rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 3682bd153df0SHong Zhang for (i=0; i<mbs; i++) { 3683647a6520SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 3684647a6520SHong Zhang nnz = nnz/bs; 3685647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 3686647a6520SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 3687647a6520SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 3688e561ad89SHong Zhang } 3689647a6520SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 3690e561ad89SHong Zhang 3691e561ad89SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 369277f764caSHong Zhang ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 3693e561ad89SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 36948761c3d6SHong Zhang ierr = MatSetType(*outmat,MATBAIJ);CHKERRQ(ierr); 36958761c3d6SHong Zhang ierr = MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 3696e561ad89SHong Zhang ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 3697e561ad89SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 3698e561ad89SHong Zhang } 3699e561ad89SHong Zhang 3700bd153df0SHong Zhang /* numeric phase */ 3701647a6520SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3702bd153df0SHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 3703e561ad89SHong Zhang 3704e561ad89SHong Zhang for (i=0; i<m; i++) { 3705e561ad89SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3706e561ad89SHong Zhang Ii = i + rstart; 3707bd153df0SHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 3708e561ad89SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3709e561ad89SHong Zhang } 3710bd153df0SHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3711bd153df0SHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3712e561ad89SHong Zhang PetscFunctionReturn(0); 3713e561ad89SHong Zhang } 3714