179bdfe76SSatish Balay #ifndef lint 2*d6de1c52SSatish Balay static char vcid[] = "$Id: mpibaij.c,v 1.4 1996/06/21 23:12:01 balay Exp balay $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 579bdfe76SSatish Balay #include "mpibaij.h" 679bdfe76SSatish Balay 779bdfe76SSatish Balay 857b952d6SSatish Balay #include "draw.h" 957b952d6SSatish Balay #include "pinclude/pviewer.h" 1057b952d6SSatish Balay 1157b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1257b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 1357b952d6SSatish Balay 1457b952d6SSatish Balay /* local utility routine that creates a mapping from the global column 1557b952d6SSatish Balay number to the local number in the off-diagonal part of the local 1657b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 1757b952d6SSatish Balay length of colmap equals the global matrix length. 1857b952d6SSatish Balay */ 1957b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 2057b952d6SSatish Balay { 2157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 2257b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 2357b952d6SSatish Balay int nbs = B->nbs,i; 2457b952d6SSatish Balay 2557b952d6SSatish Balay baij->colmap = (int *) PetscMalloc(baij->Nbs*sizeof(int));CHKPTRQ(baij->colmap); 2657b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 2757b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 2857b952d6SSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i; 2957b952d6SSatish Balay return 0; 3057b952d6SSatish Balay } 3157b952d6SSatish Balay 3257b952d6SSatish Balay 3357b952d6SSatish Balay static int MatGetReordering_MPIBAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 3457b952d6SSatish Balay { 3557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3657b952d6SSatish Balay int ierr; 3757b952d6SSatish Balay if (baij->size == 1) { 3857b952d6SSatish Balay ierr = MatGetReordering(baij->A,type,rperm,cperm); CHKERRQ(ierr); 3957b952d6SSatish Balay } else SETERRQ(1,"MatGetReordering_MPIBAIJ:not supported in parallel"); 4057b952d6SSatish Balay return 0; 4157b952d6SSatish Balay } 4257b952d6SSatish Balay 4357b952d6SSatish Balay static int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4457b952d6SSatish Balay { 4557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 4657b952d6SSatish Balay Scalar value; 4757b952d6SSatish Balay int ierr,i,j, rstart = baij->rstart, rend = baij->rend; 4857b952d6SSatish Balay int cstart = baij->cstart, cend = baij->cend,row,col; 4957b952d6SSatish Balay int roworiented = baij->roworiented,rstart_orig,rend_orig; 5057b952d6SSatish Balay int cstart_orig,cend_orig,bs=baij->bs; 5157b952d6SSatish Balay 5257b952d6SSatish Balay if (baij->insertmode != NOT_SET_VALUES && baij->insertmode != addv) { 5357b952d6SSatish Balay SETERRQ(1,"MatSetValues_MPIBAIJ:Cannot mix inserts and adds"); 5457b952d6SSatish Balay } 5557b952d6SSatish Balay baij->insertmode = addv; 5657b952d6SSatish Balay rstart_orig = rstart*bs; 5757b952d6SSatish Balay rend_orig = rend*bs; 5857b952d6SSatish Balay cstart_orig = cstart*bs; 5957b952d6SSatish Balay cend_orig = cend*bs; 6057b952d6SSatish Balay for ( i=0; i<m; i++ ) { 6157b952d6SSatish Balay if (im[i] < 0) SETERRQ(1,"MatSetValues_MPIBAIJ:Negative row"); 6257b952d6SSatish Balay if (im[i] >= baij->M) SETERRQ(1,"MatSetValues_MPIBAIJ:Row too large"); 6357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 6457b952d6SSatish Balay row = im[i] - rstart_orig; 6557b952d6SSatish Balay for ( j=0; j<n; j++ ) { 6657b952d6SSatish Balay if (in[j] < 0) SETERRQ(1,"MatSetValues_MPIBAIJ:Negative column"); 6757b952d6SSatish Balay if (in[j] >= baij->N) SETERRQ(1,"MatSetValues_MPIBAIJ:Col too large"); 6857b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 6957b952d6SSatish Balay col = in[j] - cstart_orig; 7057b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 7157b952d6SSatish Balay ierr = MatSetValues(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 7257b952d6SSatish Balay } 7357b952d6SSatish Balay else { 7457b952d6SSatish Balay if (mat->was_assembled) { 7557b952d6SSatish Balay if (!baij->colmap) {ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);} 7657b952d6SSatish Balay col = baij->colmap[in[j]]; 7757b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 7857b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 7957b952d6SSatish Balay col = in[j]; 8057b952d6SSatish Balay } 8157b952d6SSatish Balay } 8257b952d6SSatish Balay else col = in[j]; 8357b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 8457b952d6SSatish Balay ierr = MatSetValues(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 8557b952d6SSatish Balay } 8657b952d6SSatish Balay } 8757b952d6SSatish Balay } 8857b952d6SSatish Balay else { 8957b952d6SSatish Balay if (roworiented) { 9057b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 9157b952d6SSatish Balay } 9257b952d6SSatish Balay else { 9357b952d6SSatish Balay row = im[i]; 9457b952d6SSatish Balay for ( j=0; j<n; j++ ) { 9557b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 9657b952d6SSatish Balay } 9757b952d6SSatish Balay } 9857b952d6SSatish Balay } 9957b952d6SSatish Balay } 10057b952d6SSatish Balay return 0; 10157b952d6SSatish Balay } 10257b952d6SSatish Balay 103*d6de1c52SSatish Balay static int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 104*d6de1c52SSatish Balay { 105*d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 106*d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 107*d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 108*d6de1c52SSatish Balay 109*d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 110*d6de1c52SSatish Balay if (idxm[i] < 0) SETERRQ(1,"MatGetValues_MPIBAIJ:Negative row"); 111*d6de1c52SSatish Balay if (idxm[i] >= baij->M) SETERRQ(1,"MatGetValues_MPIBAIJ:Row too large"); 112*d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 113*d6de1c52SSatish Balay row = idxm[i] - bsrstart; 114*d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 115*d6de1c52SSatish Balay if (idxn[j] < 0) SETERRQ(1,"MatGetValues_MPIBAIJ:Negative column"); 116*d6de1c52SSatish Balay if (idxn[j] >= baij->N) SETERRQ(1,"MatGetValues_MPIBAIJ:Col too large"); 117*d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 118*d6de1c52SSatish Balay col = idxn[j] - bscstart; 119*d6de1c52SSatish Balay ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 120*d6de1c52SSatish Balay } 121*d6de1c52SSatish Balay else { 122*d6de1c52SSatish Balay col = baij->colmap[idxn[j]/bs]*bs + col%bs; 123*d6de1c52SSatish Balay ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 124*d6de1c52SSatish Balay } 125*d6de1c52SSatish Balay } 126*d6de1c52SSatish Balay } 127*d6de1c52SSatish Balay else { 128*d6de1c52SSatish Balay SETERRQ(1,"MatGetValues_MPIBAIJ:Only local values currently supported"); 129*d6de1c52SSatish Balay } 130*d6de1c52SSatish Balay } 131*d6de1c52SSatish Balay return 0; 132*d6de1c52SSatish Balay } 133*d6de1c52SSatish Balay 134*d6de1c52SSatish Balay static int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 135*d6de1c52SSatish Balay { 136*d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 137*d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 138*d6de1c52SSatish Balay int ierr, i, j, cstart = baij->cstart,bs2=baij->bs2; 139*d6de1c52SSatish Balay double sum = 0.0; 140*d6de1c52SSatish Balay Scalar *v; 141*d6de1c52SSatish Balay 142*d6de1c52SSatish Balay if (baij->size == 1) { 143*d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 144*d6de1c52SSatish Balay } else { 145*d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 146*d6de1c52SSatish Balay v = amat->a; 147*d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 148*d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 149*d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 150*d6de1c52SSatish Balay #else 151*d6de1c52SSatish Balay sum += (*v)*(*v); v++; 152*d6de1c52SSatish Balay #endif 153*d6de1c52SSatish Balay } 154*d6de1c52SSatish Balay v = bmat->a; 155*d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 156*d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 157*d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 158*d6de1c52SSatish Balay #else 159*d6de1c52SSatish Balay sum += (*v)*(*v); v++; 160*d6de1c52SSatish Balay #endif 161*d6de1c52SSatish Balay } 162*d6de1c52SSatish Balay MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 163*d6de1c52SSatish Balay *norm = sqrt(*norm); 164*d6de1c52SSatish Balay } 165*d6de1c52SSatish Balay else if (type == NORM_1) { /* max column norm */ 166*d6de1c52SSatish Balay double *tmp, *tmp2; 167*d6de1c52SSatish Balay int *jj, *garray = baij->garray; 168*d6de1c52SSatish Balay tmp = (double *) PetscMalloc( baij->N*sizeof(double) ); CHKPTRQ(tmp); 169*d6de1c52SSatish Balay tmp2 = (double *) PetscMalloc( baij->N*sizeof(double) ); CHKPTRQ(tmp2); 170*d6de1c52SSatish Balay PetscMemzero(tmp,baij->N*sizeof(double)); 171*d6de1c52SSatish Balay *norm = 0.0; 172*d6de1c52SSatish Balay v = amat->a; jj = amat->j; 173*d6de1c52SSatish Balay for ( j=0; j<amat->nz; j++ ) { 174*d6de1c52SSatish Balay tmp[cstart + *jj++ ] += PetscAbsScalar(*v); v++; 175*d6de1c52SSatish Balay } 176*d6de1c52SSatish Balay v = bmat->a; jj = bmat->j; 177*d6de1c52SSatish Balay for ( j=0; j<bmat->nz; j++ ) { 178*d6de1c52SSatish Balay tmp[garray[*jj++ ]] += PetscAbsScalar(*v); v++; 179*d6de1c52SSatish Balay } 180*d6de1c52SSatish Balay MPI_Allreduce(tmp,tmp2,baij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 181*d6de1c52SSatish Balay for ( j=0; j<baij->N; j++ ) { 182*d6de1c52SSatish Balay if (tmp2[j] > *norm) *norm = tmp2[j]; 183*d6de1c52SSatish Balay } 184*d6de1c52SSatish Balay PetscFree(tmp); PetscFree(tmp2); 185*d6de1c52SSatish Balay } 186*d6de1c52SSatish Balay else if (type == NORM_INFINITY) { /* max row norm */ 187*d6de1c52SSatish Balay double ntemp = 0.0; 188*d6de1c52SSatish Balay for ( j=0; j<amat->m; j++ ) { 189*d6de1c52SSatish Balay v = amat->a + amat->i[j]; 190*d6de1c52SSatish Balay sum = 0.0; 191*d6de1c52SSatish Balay for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 192*d6de1c52SSatish Balay sum += PetscAbsScalar(*v); v++; 193*d6de1c52SSatish Balay } 194*d6de1c52SSatish Balay v = bmat->a + bmat->i[j]; 195*d6de1c52SSatish Balay for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 196*d6de1c52SSatish Balay sum += PetscAbsScalar(*v); v++; 197*d6de1c52SSatish Balay } 198*d6de1c52SSatish Balay if (sum > ntemp) ntemp = sum; 199*d6de1c52SSatish Balay } 200*d6de1c52SSatish Balay MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 201*d6de1c52SSatish Balay } 202*d6de1c52SSatish Balay else { 203*d6de1c52SSatish Balay SETERRQ(1,"MatNorm_MPIBAIJ:No support for two norm"); 204*d6de1c52SSatish Balay } 205*d6de1c52SSatish Balay } 206*d6de1c52SSatish Balay return 0; 207*d6de1c52SSatish Balay } 20857b952d6SSatish Balay 20957b952d6SSatish Balay static int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 21057b952d6SSatish Balay { 21157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 21257b952d6SSatish Balay MPI_Comm comm = mat->comm; 21357b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 21457b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 21557b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 21657b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 21757b952d6SSatish Balay InsertMode addv; 21857b952d6SSatish Balay Scalar *rvalues,*svalues; 21957b952d6SSatish Balay 22057b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 22157b952d6SSatish Balay MPI_Allreduce(&baij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 22257b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 22357b952d6SSatish Balay SETERRQ(1,"MatAssemblyBegin_MPIBAIJ:Some processors inserted others added"); 22457b952d6SSatish Balay } 22557b952d6SSatish Balay baij->insertmode = addv; /* in case this processor had no cache */ 22657b952d6SSatish Balay 22757b952d6SSatish Balay /* first count number of contributors to each processor */ 22857b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 22957b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 23057b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 23157b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 23257b952d6SSatish Balay idx = baij->stash.idx[i]; 23357b952d6SSatish Balay for ( j=0; j<size; j++ ) { 23457b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 23557b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 23657b952d6SSatish Balay } 23757b952d6SSatish Balay } 23857b952d6SSatish Balay } 23957b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 24057b952d6SSatish Balay 24157b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 24257b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 24357b952d6SSatish Balay MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 24457b952d6SSatish Balay nreceives = work[rank]; 24557b952d6SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 24657b952d6SSatish Balay nmax = work[rank]; 24757b952d6SSatish Balay PetscFree(work); 24857b952d6SSatish Balay 24957b952d6SSatish Balay /* post receives: 25057b952d6SSatish Balay 1) each message will consist of ordered pairs 25157b952d6SSatish Balay (global index,value) we store the global index as a double 25257b952d6SSatish Balay to simplify the message passing. 25357b952d6SSatish Balay 2) since we don't know how long each individual message is we 25457b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 25557b952d6SSatish Balay this is a lot of wasted space. 25657b952d6SSatish Balay 25757b952d6SSatish Balay 25857b952d6SSatish Balay This could be done better. 25957b952d6SSatish Balay */ 26057b952d6SSatish Balay rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 26157b952d6SSatish Balay CHKPTRQ(rvalues); 26257b952d6SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 26357b952d6SSatish Balay CHKPTRQ(recv_waits); 26457b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 26557b952d6SSatish Balay MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 26657b952d6SSatish Balay comm,recv_waits+i); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay 26957b952d6SSatish Balay /* do sends: 27057b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 27157b952d6SSatish Balay the ith processor 27257b952d6SSatish Balay */ 27357b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 27457b952d6SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 27557b952d6SSatish Balay CHKPTRQ(send_waits); 27657b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 27757b952d6SSatish Balay starts[0] = 0; 27857b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 27957b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 28057b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 28157b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 28257b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 28357b952d6SSatish Balay } 28457b952d6SSatish Balay PetscFree(owner); 28557b952d6SSatish Balay starts[0] = 0; 28657b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 28757b952d6SSatish Balay count = 0; 28857b952d6SSatish Balay for ( i=0; i<size; i++ ) { 28957b952d6SSatish Balay if (procs[i]) { 29057b952d6SSatish Balay MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 29157b952d6SSatish Balay comm,send_waits+count++); 29257b952d6SSatish Balay } 29357b952d6SSatish Balay } 29457b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 29557b952d6SSatish Balay 29657b952d6SSatish Balay /* Free cache space */ 29757b952d6SSatish Balay PLogInfo(0,"[%d]MatAssemblyBegin_MPIBAIJ:Number of off processor values %d\n",rank,baij->stash.n); 29857b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 29957b952d6SSatish Balay 30057b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 30157b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 30257b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 30357b952d6SSatish Balay baij->rmax = nmax; 30457b952d6SSatish Balay 30557b952d6SSatish Balay return 0; 30657b952d6SSatish Balay } 30757b952d6SSatish Balay 30857b952d6SSatish Balay 30957b952d6SSatish Balay static int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 31057b952d6SSatish Balay { 31157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 31257b952d6SSatish Balay MPI_Status *send_status,recv_status; 31357b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 31457b952d6SSatish Balay int bs=baij->bs,row,col,other_disassembled; 31557b952d6SSatish Balay Scalar *values,val; 31657b952d6SSatish Balay InsertMode addv = baij->insertmode; 31757b952d6SSatish Balay 31857b952d6SSatish Balay /* wait on receives */ 31957b952d6SSatish Balay while (count) { 32057b952d6SSatish Balay MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status); 32157b952d6SSatish Balay /* unpack receives into our local space */ 32257b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 32357b952d6SSatish Balay MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 32457b952d6SSatish Balay n = n/3; 32557b952d6SSatish Balay for ( i=0; i<n; i++ ) { 32657b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 32757b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 32857b952d6SSatish Balay val = values[3*i+2]; 32957b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 33057b952d6SSatish Balay col -= baij->cstart*bs; 33157b952d6SSatish Balay MatSetValues(baij->A,1,&row,1,&col,&val,addv); 33257b952d6SSatish Balay } 33357b952d6SSatish Balay else { 33457b952d6SSatish Balay if (mat->was_assembled) { 33557b952d6SSatish Balay if (!baij->colmap) {ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr);} 33657b952d6SSatish Balay col = baij->colmap[col/bs]*bs + col%bs; 33757b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 33857b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 33957b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 34057b952d6SSatish Balay } 34157b952d6SSatish Balay } 34257b952d6SSatish Balay MatSetValues(baij->B,1,&row,1,&col,&val,addv); 34357b952d6SSatish Balay } 34457b952d6SSatish Balay } 34557b952d6SSatish Balay count--; 34657b952d6SSatish Balay } 34757b952d6SSatish Balay PetscFree(baij->recv_waits); PetscFree(baij->rvalues); 34857b952d6SSatish Balay 34957b952d6SSatish Balay /* wait on sends */ 35057b952d6SSatish Balay if (baij->nsends) { 35157b952d6SSatish Balay send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status)); 35257b952d6SSatish Balay CHKPTRQ(send_status); 35357b952d6SSatish Balay MPI_Waitall(baij->nsends,baij->send_waits,send_status); 35457b952d6SSatish Balay PetscFree(send_status); 35557b952d6SSatish Balay } 35657b952d6SSatish Balay PetscFree(baij->send_waits); PetscFree(baij->svalues); 35757b952d6SSatish Balay 35857b952d6SSatish Balay baij->insertmode = NOT_SET_VALUES; 35957b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 36057b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 36157b952d6SSatish Balay 36257b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 36357b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 36457b952d6SSatish Balay MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 36557b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 36657b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 36757b952d6SSatish Balay } 36857b952d6SSatish Balay 36957b952d6SSatish Balay if (!mat->was_assembled && mode == FINAL_ASSEMBLY) { 37057b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 37157b952d6SSatish Balay } 37257b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 37357b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 37457b952d6SSatish Balay 37557b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 37657b952d6SSatish Balay return 0; 37757b952d6SSatish Balay } 37857b952d6SSatish Balay 37957b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 38057b952d6SSatish Balay { 38157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 38257b952d6SSatish Balay int ierr; 38357b952d6SSatish Balay 38457b952d6SSatish Balay if (baij->size == 1) { 38557b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 38657b952d6SSatish Balay } 38757b952d6SSatish Balay else SETERRQ(1,"MatView_MPIBAIJ_Binary:Only uniprocessor output supported"); 38857b952d6SSatish Balay return 0; 38957b952d6SSatish Balay } 39057b952d6SSatish Balay 39157b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 39257b952d6SSatish Balay { 39357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 394cee3aa6bSSatish Balay int ierr, format,rank,bs=baij->bs; 39557b952d6SSatish Balay FILE *fd; 39657b952d6SSatish Balay ViewerType vtype; 39757b952d6SSatish Balay 39857b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 39957b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 40057b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 40157b952d6SSatish Balay if (format == ASCII_FORMAT_INFO_DETAILED) { 40257b952d6SSatish Balay int nz, nzalloc, mem; 40357b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 40457b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 40557b952d6SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem); 40657b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 40757b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 40857b952d6SSatish Balay rank,baij->m,nz*bs,nzalloc*bs,baij->bs,mem); 40957b952d6SSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&nz,&nzalloc,&mem); 41057b952d6SSatish Balay fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,nz*bs); 41157b952d6SSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&nz,&nzalloc,&mem); 41257b952d6SSatish Balay fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,nz*bs); 41357b952d6SSatish Balay fflush(fd); 41457b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 41557b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 41657b952d6SSatish Balay return 0; 41757b952d6SSatish Balay } 41857b952d6SSatish Balay else if (format == ASCII_FORMAT_INFO) { 41957b952d6SSatish Balay return 0; 42057b952d6SSatish Balay } 42157b952d6SSatish Balay } 42257b952d6SSatish Balay 42357b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 42457b952d6SSatish Balay Draw draw; 42557b952d6SSatish Balay PetscTruth isnull; 42657b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 42757b952d6SSatish Balay ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0; 42857b952d6SSatish Balay } 42957b952d6SSatish Balay 43057b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 43157b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 43257b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 43357b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 43457b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 43557b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 43657b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 43757b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 43857b952d6SSatish Balay fflush(fd); 43957b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 44057b952d6SSatish Balay } 44157b952d6SSatish Balay else { 44257b952d6SSatish Balay int size = baij->size; 44357b952d6SSatish Balay rank = baij->rank; 44457b952d6SSatish Balay if (size == 1) { 44557b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 44657b952d6SSatish Balay } 44757b952d6SSatish Balay else { 44857b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 44957b952d6SSatish Balay Mat A; 45057b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 45157b952d6SSatish Balay int M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals; 45257b952d6SSatish Balay int mbs=baij->mbs; 45357b952d6SSatish Balay Scalar *a; 45457b952d6SSatish Balay 45557b952d6SSatish Balay if (!rank) { 456cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 45757b952d6SSatish Balay CHKERRQ(ierr); 45857b952d6SSatish Balay } 45957b952d6SSatish Balay else { 460cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 46157b952d6SSatish Balay CHKERRQ(ierr); 46257b952d6SSatish Balay } 46357b952d6SSatish Balay PLogObjectParent(mat,A); 46457b952d6SSatish Balay 46557b952d6SSatish Balay /* copy over the A part */ 46657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 46757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 46857b952d6SSatish Balay row = baij->rstart; 46957b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 47057b952d6SSatish Balay 47157b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 47257b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 47357b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 47457b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 47557b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 47657b952d6SSatish Balay for (k=0; k<bs; k++ ) { 477cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 478cee3aa6bSSatish Balay col++; a += bs; 47957b952d6SSatish Balay } 48057b952d6SSatish Balay } 48157b952d6SSatish Balay } 48257b952d6SSatish Balay /* copy over the B part */ 48357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 48457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 48557b952d6SSatish Balay row = baij->rstart*bs; 48657b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 48757b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 48857b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 48957b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 49057b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 49157b952d6SSatish Balay for (k=0; k<bs; k++ ) { 492cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 493cee3aa6bSSatish Balay col++; a += bs; 49457b952d6SSatish Balay } 49557b952d6SSatish Balay } 49657b952d6SSatish Balay } 49757b952d6SSatish Balay PetscFree(rvals); 49857b952d6SSatish Balay ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 49957b952d6SSatish Balay ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 50057b952d6SSatish Balay if (!rank) { 50157b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 50257b952d6SSatish Balay } 50357b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 50457b952d6SSatish Balay } 50557b952d6SSatish Balay } 50657b952d6SSatish Balay return 0; 50757b952d6SSatish Balay } 50857b952d6SSatish Balay 50957b952d6SSatish Balay 51057b952d6SSatish Balay 51157b952d6SSatish Balay static int MatView_MPIBAIJ(PetscObject obj,Viewer viewer) 51257b952d6SSatish Balay { 51357b952d6SSatish Balay Mat mat = (Mat) obj; 51457b952d6SSatish Balay int ierr; 51557b952d6SSatish Balay ViewerType vtype; 51657b952d6SSatish Balay 51757b952d6SSatish Balay if (!viewer) { 51857b952d6SSatish Balay viewer = STDOUT_VIEWER_SELF; 51957b952d6SSatish Balay } 52057b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 52157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 52257b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 52357b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 52457b952d6SSatish Balay } 52557b952d6SSatish Balay else if (vtype == BINARY_FILE_VIEWER) { 52657b952d6SSatish Balay return MatView_MPIBAIJ_Binary(mat,viewer); 52757b952d6SSatish Balay } 52857b952d6SSatish Balay return 0; 52957b952d6SSatish Balay } 53057b952d6SSatish Balay 53179bdfe76SSatish Balay static int MatDestroy_MPIBAIJ(PetscObject obj) 53279bdfe76SSatish Balay { 53379bdfe76SSatish Balay Mat mat = (Mat) obj; 53479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 53579bdfe76SSatish Balay int ierr; 53679bdfe76SSatish Balay 53779bdfe76SSatish Balay #if defined(PETSC_LOG) 53879bdfe76SSatish Balay PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N); 53979bdfe76SSatish Balay #endif 54079bdfe76SSatish Balay 54179bdfe76SSatish Balay PetscFree(baij->rowners); 54279bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 54379bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 54479bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 54579bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 54679bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 54779bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 54879bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 54979bdfe76SSatish Balay PetscFree(baij); 55079bdfe76SSatish Balay PLogObjectDestroy(mat); 55179bdfe76SSatish Balay PetscHeaderDestroy(mat); 55279bdfe76SSatish Balay return 0; 55379bdfe76SSatish Balay } 55479bdfe76SSatish Balay 555cee3aa6bSSatish Balay static int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 556cee3aa6bSSatish Balay { 557cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 558cee3aa6bSSatish Balay int ierr; 559cee3aa6bSSatish Balay 560cee3aa6bSSatish Balay ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx); CHKERRQ(ierr); 561cee3aa6bSSatish Balay ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr); 562cee3aa6bSSatish Balay ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx); CHKERRQ(ierr); 563cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 564cee3aa6bSSatish Balay return 0; 565cee3aa6bSSatish Balay } 566cee3aa6bSSatish Balay 567cee3aa6bSSatish Balay static int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 568cee3aa6bSSatish Balay { 569cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 570cee3aa6bSSatish Balay int ierr; 571cee3aa6bSSatish Balay ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 572cee3aa6bSSatish Balay ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 573cee3aa6bSSatish Balay ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 574cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 575cee3aa6bSSatish Balay return 0; 576cee3aa6bSSatish Balay } 577cee3aa6bSSatish Balay 578cee3aa6bSSatish Balay static int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 579cee3aa6bSSatish Balay { 580cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 581cee3aa6bSSatish Balay int ierr; 582cee3aa6bSSatish Balay 583cee3aa6bSSatish Balay /* do nondiagonal part */ 584cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 585cee3aa6bSSatish Balay /* send it on its way */ 586cee3aa6bSSatish Balay ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 587cee3aa6bSSatish Balay (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 588cee3aa6bSSatish Balay /* do local part */ 589cee3aa6bSSatish Balay ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr); 590cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 591cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 592cee3aa6bSSatish Balay /* but is not perhaps always true. */ 593cee3aa6bSSatish Balay ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 594cee3aa6bSSatish Balay (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 595cee3aa6bSSatish Balay return 0; 596cee3aa6bSSatish Balay } 597cee3aa6bSSatish Balay 598cee3aa6bSSatish Balay static int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 599cee3aa6bSSatish Balay { 600cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 601cee3aa6bSSatish Balay int ierr; 602cee3aa6bSSatish Balay 603cee3aa6bSSatish Balay /* do nondiagonal part */ 604cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 605cee3aa6bSSatish Balay /* send it on its way */ 606cee3aa6bSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 607cee3aa6bSSatish Balay (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 608cee3aa6bSSatish Balay /* do local part */ 609cee3aa6bSSatish Balay ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 610cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 611cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 612cee3aa6bSSatish Balay /* but is not perhaps always true. */ 613cee3aa6bSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 614cee3aa6bSSatish Balay (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 615cee3aa6bSSatish Balay return 0; 616cee3aa6bSSatish Balay } 617cee3aa6bSSatish Balay 618cee3aa6bSSatish Balay /* 619cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 620cee3aa6bSSatish Balay diagonal block 621cee3aa6bSSatish Balay */ 622cee3aa6bSSatish Balay static int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 623cee3aa6bSSatish Balay { 624cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 625cee3aa6bSSatish Balay if (a->M != a->N) 626cee3aa6bSSatish Balay SETERRQ(1,"MatGetDiagonal_MPIBAIJ:Supports only square matrix where A->A is diag block"); 627cee3aa6bSSatish Balay return MatGetDiagonal(a->A,v); 628cee3aa6bSSatish Balay } 629cee3aa6bSSatish Balay 630cee3aa6bSSatish Balay static int MatScale_MPIBAIJ(Scalar *aa,Mat A) 631cee3aa6bSSatish Balay { 632cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 633cee3aa6bSSatish Balay int ierr; 634cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 635cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 636cee3aa6bSSatish Balay return 0; 637cee3aa6bSSatish Balay } 63857b952d6SSatish Balay static int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 63957b952d6SSatish Balay { 64057b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 64157b952d6SSatish Balay *m = mat->M; *n = mat->N; 64257b952d6SSatish Balay return 0; 64357b952d6SSatish Balay } 64457b952d6SSatish Balay 64557b952d6SSatish Balay static int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 64657b952d6SSatish Balay { 64757b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 64857b952d6SSatish Balay *m = mat->m; *n = mat->N; 64957b952d6SSatish Balay return 0; 65057b952d6SSatish Balay } 65157b952d6SSatish Balay 65257b952d6SSatish Balay static int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 65357b952d6SSatish Balay { 65457b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 65557b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 65657b952d6SSatish Balay return 0; 65757b952d6SSatish Balay } 65857b952d6SSatish Balay 65979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 66079bdfe76SSatish Balay static struct _MatOps MatOps = { 661cee3aa6bSSatish Balay MatSetValues_MPIBAIJ,0,0,MatMult_MPIBAIJ, 662cee3aa6bSSatish Balay MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 66379bdfe76SSatish Balay 0,0,0,0, 66479bdfe76SSatish Balay 0,0,0,0, 665cee3aa6bSSatish Balay 0,MatGetDiagonal_MPIBAIJ,0,0, 66657b952d6SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,0, 66757b952d6SSatish Balay 0,0,MatGetReordering_MPIBAIJ,0, 66857b952d6SSatish Balay 0,0,0,MatGetSize_MPIBAIJ, 66957b952d6SSatish Balay MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 67079bdfe76SSatish Balay 0,0,0,0, 67179bdfe76SSatish Balay 0,0,0,0, 67279bdfe76SSatish Balay 0,0,0,0, 67379bdfe76SSatish Balay 0,0,0,0, 674cee3aa6bSSatish Balay MatScale_MPIBAIJ,0,0}; 67579bdfe76SSatish Balay 67679bdfe76SSatish Balay 67779bdfe76SSatish Balay /*@C 67879bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 67979bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 68079bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 68179bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 68279bdfe76SSatish Balay performance can be increased by more than a factor of 50. 68379bdfe76SSatish Balay 68479bdfe76SSatish Balay Input Parameters: 68579bdfe76SSatish Balay . comm - MPI communicator 68679bdfe76SSatish Balay . bs - size of blockk 68779bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 68879bdfe76SSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated 68979bdfe76SSatish Balay if N is given) 69079bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 69179bdfe76SSatish Balay . N - number of global columns (or PETSC_DECIDE to have calculated 69279bdfe76SSatish Balay if n is given) 69379bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 69479bdfe76SSatish Balay submatrix (same for all local rows) 69579bdfe76SSatish Balay . d_nzz - number of block nonzeros per block row in diagonal portion of local 69679bdfe76SSatish Balay submatrix or null (possibly different for each row). You must leave 69779bdfe76SSatish Balay room for the diagonal entry even if it is zero. 69879bdfe76SSatish Balay . o_nz - number of block nonzeros per block row in off-diagonal portion of local 69979bdfe76SSatish Balay submatrix (same for all local rows). 70079bdfe76SSatish Balay . o_nzz - number of block nonzeros per block row in off-diagonal portion of local 70179bdfe76SSatish Balay submatrix or null (possibly different for each row). 70279bdfe76SSatish Balay 70379bdfe76SSatish Balay Output Parameter: 70479bdfe76SSatish Balay . A - the matrix 70579bdfe76SSatish Balay 70679bdfe76SSatish Balay Notes: 70779bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 70879bdfe76SSatish Balay (possibly both). 70979bdfe76SSatish Balay 71079bdfe76SSatish Balay Storage Information: 71179bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 71279bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 71379bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 71479bdfe76SSatish Balay local matrix (a rectangular submatrix). 71579bdfe76SSatish Balay 71679bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 71779bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 71879bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 71979bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 72079bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 72179bdfe76SSatish Balay 72279bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 72379bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 72479bdfe76SSatish Balay 72579bdfe76SSatish Balay $ 0 1 2 3 4 5 6 7 8 9 10 11 72679bdfe76SSatish Balay $ ------------------- 72779bdfe76SSatish Balay $ row 3 | o o o d d d o o o o o o 72879bdfe76SSatish Balay $ row 4 | o o o d d d o o o o o o 72979bdfe76SSatish Balay $ row 5 | o o o d d d o o o o o o 73079bdfe76SSatish Balay $ ------------------- 73179bdfe76SSatish Balay $ 73279bdfe76SSatish Balay 73379bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 73479bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 73579bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 73657b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 73779bdfe76SSatish Balay 73879bdfe76SSatish Balay Now d_nz should indicate the number of nonzeros per row in the d matrix, 73979bdfe76SSatish Balay and o_nz should indicate the number of nonzeros per row in the o matrix. 74079bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 74179bdfe76SSatish Balay one expects d_nz >> o_nz. For additional details, see the users manual 74279bdfe76SSatish Balay chapter on matrices and the file $(PETSC_DIR)/Performance. 74379bdfe76SSatish Balay 74479bdfe76SSatish Balay .keywords: matrix, aij, compressed row, sparse, parallel 74579bdfe76SSatish Balay 74679bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues() 74779bdfe76SSatish Balay @*/ 74879bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 74979bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 75079bdfe76SSatish Balay { 75179bdfe76SSatish Balay Mat B; 75279bdfe76SSatish Balay Mat_MPIBAIJ *b; 753cee3aa6bSSatish Balay int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE; 75479bdfe76SSatish Balay 75579bdfe76SSatish Balay if (bs < 1) SETERRQ(1,"MatCreateMPIBAIJ: invalid block size specified"); 75679bdfe76SSatish Balay *A = 0; 75779bdfe76SSatish Balay PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATMPIBAIJ,comm); 75879bdfe76SSatish Balay PLogObjectCreate(B); 75979bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 76079bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 76179bdfe76SSatish Balay PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 76279bdfe76SSatish Balay B->destroy = MatDestroy_MPIBAIJ; 76379bdfe76SSatish Balay B->view = MatView_MPIBAIJ; 76457b952d6SSatish Balay 76579bdfe76SSatish Balay B->factor = 0; 76679bdfe76SSatish Balay B->assembled = PETSC_FALSE; 76779bdfe76SSatish Balay 76879bdfe76SSatish Balay b->insertmode = NOT_SET_VALUES; 76979bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 77079bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 77179bdfe76SSatish Balay 77279bdfe76SSatish Balay if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) 77357b952d6SSatish Balay SETERRQ(1,"MatCreateMPIBAIJ:Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 774cee3aa6bSSatish Balay if ( M == PETSC_DECIDE && m == PETSC_DECIDE) SETERRQ(1,"MatCreateMPIBAIJ: either M or m should be specified"); 775cee3aa6bSSatish Balay if ( M == PETSC_DECIDE && n == PETSC_DECIDE)SETERRQ(1,"MatCreateMPIBAIJ: either N or n should be specified"); 776cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 777cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 77879bdfe76SSatish Balay 77979bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 78079bdfe76SSatish Balay work[0] = m; work[1] = n; 78179bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 78279bdfe76SSatish Balay MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 78379bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 78479bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 78579bdfe76SSatish Balay } 78679bdfe76SSatish Balay if (m == PETSC_DECIDE) { 78779bdfe76SSatish Balay Mbs = M/bs; 78879bdfe76SSatish Balay if (Mbs*bs != M) SETERRQ(1,"MatCreateMPIBAIJ: No of global rows must be divisible by blocksize"); 78979bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 79079bdfe76SSatish Balay m = mbs*bs; 79179bdfe76SSatish Balay } 79279bdfe76SSatish Balay if (n == PETSC_DECIDE) { 79379bdfe76SSatish Balay Nbs = N/bs; 79479bdfe76SSatish Balay if (Nbs*bs != N) SETERRQ(1,"MatCreateMPIBAIJ: No of global cols must be divisible by blocksize"); 79579bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 79679bdfe76SSatish Balay n = nbs*bs; 79779bdfe76SSatish Balay } 798cee3aa6bSSatish Balay if (mbs*bs != m || nbs*bs != n) SETERRQ(1,"MatCreateMPIBAIJ: No of local rows, cols must be divisible by blocksize"); 79979bdfe76SSatish Balay 80079bdfe76SSatish Balay b->m = m; B->m = m; 80179bdfe76SSatish Balay b->n = n; B->n = n; 80279bdfe76SSatish Balay b->N = N; B->N = N; 80379bdfe76SSatish Balay b->M = M; B->M = M; 80479bdfe76SSatish Balay b->bs = bs; 80579bdfe76SSatish Balay b->bs2 = bs*bs; 80679bdfe76SSatish Balay b->mbs = mbs; 80779bdfe76SSatish Balay b->nbs = nbs; 80879bdfe76SSatish Balay b->Mbs = Mbs; 80979bdfe76SSatish Balay b->Nbs = Nbs; 81079bdfe76SSatish Balay 81179bdfe76SSatish Balay /* build local table of row and column ownerships */ 81279bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 81379bdfe76SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 81479bdfe76SSatish Balay b->cowners = b->rowners + b->size + 1; 81579bdfe76SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm); 81679bdfe76SSatish Balay b->rowners[0] = 0; 81779bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 81879bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 81979bdfe76SSatish Balay } 82079bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 82179bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 82279bdfe76SSatish Balay MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm); 82379bdfe76SSatish Balay b->cowners[0] = 0; 82479bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 82579bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 82679bdfe76SSatish Balay } 82779bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 82879bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 82979bdfe76SSatish Balay 83079bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 83179bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 83279bdfe76SSatish Balay PLogObjectParent(B,b->A); 83379bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 83479bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 83579bdfe76SSatish Balay PLogObjectParent(B,b->B); 83679bdfe76SSatish Balay 83779bdfe76SSatish Balay /* build cache for off array entries formed */ 83879bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 83979bdfe76SSatish Balay b->colmap = 0; 84079bdfe76SSatish Balay b->garray = 0; 84179bdfe76SSatish Balay b->roworiented = 1; 84279bdfe76SSatish Balay 84379bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 84479bdfe76SSatish Balay b->lvec = 0; 84579bdfe76SSatish Balay b->Mvctx = 0; 84679bdfe76SSatish Balay 84779bdfe76SSatish Balay /* stuff for MatGetRow() */ 84879bdfe76SSatish Balay b->rowindices = 0; 84979bdfe76SSatish Balay b->rowvalues = 0; 85079bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 85179bdfe76SSatish Balay 85279bdfe76SSatish Balay *A = B; 85379bdfe76SSatish Balay return 0; 85479bdfe76SSatish Balay } 85557b952d6SSatish Balay 85657b952d6SSatish Balay #include "sys.h" 85757b952d6SSatish Balay 85857b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 85957b952d6SSatish Balay { 86057b952d6SSatish Balay Mat A; 86157b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 86257b952d6SSatish Balay Scalar *vals,*buf; 86357b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 86457b952d6SSatish Balay MPI_Status status; 865cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 86657b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 86757b952d6SSatish Balay int flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows; 86857b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 86957b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 87057b952d6SSatish Balay 87157b952d6SSatish Balay 87257b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 87357b952d6SSatish Balay bs2 = bs*bs; 87457b952d6SSatish Balay 87557b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 87657b952d6SSatish Balay if (!rank) { 87757b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 87857b952d6SSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr); 879cee3aa6bSSatish Balay if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIBAIJ:not matrix object"); 88057b952d6SSatish Balay } 88157b952d6SSatish Balay 88257b952d6SSatish Balay MPI_Bcast(header+1,3,MPI_INT,0,comm); 88357b952d6SSatish Balay M = header[1]; N = header[2]; 88457b952d6SSatish Balay 88557b952d6SSatish Balay 88657b952d6SSatish Balay if (M != N) SETERRQ(1,"MatLoad_SeqBAIJ:Can only do square matrices"); 88757b952d6SSatish Balay 88857b952d6SSatish Balay /* 88957b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 89057b952d6SSatish Balay divisible by the blocksize 89157b952d6SSatish Balay */ 89257b952d6SSatish Balay Mbs = M/bs; 89357b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 89457b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 89557b952d6SSatish Balay else Mbs++; 89657b952d6SSatish Balay if (extra_rows &&!rank) { 89757b952d6SSatish Balay PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize"); 89857b952d6SSatish Balay } 89957b952d6SSatish Balay /* determine ownership of all rows */ 90057b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 90157b952d6SSatish Balay m = mbs * bs; 902cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 903cee3aa6bSSatish Balay browners = rowners + size + 1; 90457b952d6SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm); 90557b952d6SSatish Balay rowners[0] = 0; 906cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 907cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 90857b952d6SSatish Balay rstart = rowners[rank]; 90957b952d6SSatish Balay rend = rowners[rank+1]; 91057b952d6SSatish Balay 91157b952d6SSatish Balay /* distribute row lengths to all processors */ 91257b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 91357b952d6SSatish Balay if (!rank) { 91457b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 91557b952d6SSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 91657b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 91757b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 918cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 919cee3aa6bSSatish Balay MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm); 92057b952d6SSatish Balay PetscFree(sndcounts); 92157b952d6SSatish Balay } 92257b952d6SSatish Balay else { 92357b952d6SSatish Balay MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm); 92457b952d6SSatish Balay } 92557b952d6SSatish Balay 92657b952d6SSatish Balay if (!rank) { 92757b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 92857b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 92957b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 93057b952d6SSatish Balay for ( i=0; i<size; i++ ) { 93157b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 93257b952d6SSatish Balay procsnz[i] += rowlengths[j]; 93357b952d6SSatish Balay } 93457b952d6SSatish Balay } 93557b952d6SSatish Balay PetscFree(rowlengths); 93657b952d6SSatish Balay 93757b952d6SSatish Balay /* determine max buffer needed and allocate it */ 93857b952d6SSatish Balay maxnz = 0; 93957b952d6SSatish Balay for ( i=0; i<size; i++ ) { 94057b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 94157b952d6SSatish Balay } 94257b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 94357b952d6SSatish Balay 94457b952d6SSatish Balay /* read in my part of the matrix column indices */ 94557b952d6SSatish Balay nz = procsnz[0]; 94657b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 94757b952d6SSatish Balay mycols = ibuf; 948cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 94957b952d6SSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr); 950cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 951cee3aa6bSSatish Balay 95257b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 95357b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 95457b952d6SSatish Balay nz = procsnz[i]; 95557b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 95657b952d6SSatish Balay MPI_Send(cols,nz,MPI_INT,i,tag,comm); 95757b952d6SSatish Balay } 95857b952d6SSatish Balay /* read in the stuff for the last proc */ 95957b952d6SSatish Balay if ( size != 1 ) { 96057b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 96157b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 96257b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 963cee3aa6bSSatish Balay MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm); 96457b952d6SSatish Balay } 96557b952d6SSatish Balay PetscFree(cols); 96657b952d6SSatish Balay } 96757b952d6SSatish Balay else { 96857b952d6SSatish Balay /* determine buffer space needed for message */ 96957b952d6SSatish Balay nz = 0; 97057b952d6SSatish Balay for ( i=0; i<m; i++ ) { 97157b952d6SSatish Balay nz += locrowlens[i]; 97257b952d6SSatish Balay } 97357b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 97457b952d6SSatish Balay mycols = ibuf; 97557b952d6SSatish Balay /* receive message of column indices*/ 97657b952d6SSatish Balay MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 97757b952d6SSatish Balay MPI_Get_count(&status,MPI_INT,&maxnz); 978cee3aa6bSSatish Balay if (maxnz != nz) SETERRQ(1,"MatLoad_MPIBAIJ:something is wrong with file"); 97957b952d6SSatish Balay } 98057b952d6SSatish Balay 98157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 982cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 983cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 98457b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 985cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 98657b952d6SSatish Balay masked1 = mask + Mbs; 98757b952d6SSatish Balay masked2 = masked1 + Mbs; 98857b952d6SSatish Balay rowcount = 0; nzcount = 0; 98957b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 99057b952d6SSatish Balay dcount = 0; 99157b952d6SSatish Balay odcount = 0; 99257b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 99357b952d6SSatish Balay kmax = locrowlens[rowcount]; 99457b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 99557b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 99657b952d6SSatish Balay if (!mask[tmp]) { 99757b952d6SSatish Balay mask[tmp] = 1; 99857b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 99957b952d6SSatish Balay else masked1[dcount++] = tmp; 100057b952d6SSatish Balay } 100157b952d6SSatish Balay } 100257b952d6SSatish Balay rowcount++; 100357b952d6SSatish Balay } 1004cee3aa6bSSatish Balay 100557b952d6SSatish Balay dlens[i] = dcount; 100657b952d6SSatish Balay odlens[i] = odcount; 1007cee3aa6bSSatish Balay 100857b952d6SSatish Balay /* zero out the mask elements we set */ 100957b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 101057b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 101157b952d6SSatish Balay } 1012cee3aa6bSSatish Balay 101357b952d6SSatish Balay /* create our matrix */ 101457b952d6SSatish Balay ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 101557b952d6SSatish Balay A = *newmat; 101657b952d6SSatish Balay MatSetOption(A,COLUMNS_SORTED); 101757b952d6SSatish Balay 101857b952d6SSatish Balay if (!rank) { 101957b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 102057b952d6SSatish Balay /* read in my part of the matrix numerical values */ 102157b952d6SSatish Balay nz = procsnz[0]; 102257b952d6SSatish Balay vals = buf; 1023cee3aa6bSSatish Balay mycols = ibuf; 1024cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 102557b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 1026cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 102757b952d6SSatish Balay /* insert into matrix */ 102857b952d6SSatish Balay jj = rstart*bs; 102957b952d6SSatish Balay for ( i=0; i<m; i++ ) { 103057b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 103157b952d6SSatish Balay mycols += locrowlens[i]; 103257b952d6SSatish Balay vals += locrowlens[i]; 103357b952d6SSatish Balay jj++; 103457b952d6SSatish Balay } 103557b952d6SSatish Balay /* read in other processors( except the last one) and ship out */ 103657b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 103757b952d6SSatish Balay nz = procsnz[i]; 103857b952d6SSatish Balay vals = buf; 103957b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 104057b952d6SSatish Balay MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 104157b952d6SSatish Balay } 104257b952d6SSatish Balay /* the last proc */ 104357b952d6SSatish Balay if ( size != 1 ){ 104457b952d6SSatish Balay nz = procsnz[i] - extra_rows; 1045cee3aa6bSSatish Balay vals = buf; 104657b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 104757b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 1048cee3aa6bSSatish Balay MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm); 104957b952d6SSatish Balay } 105057b952d6SSatish Balay PetscFree(procsnz); 105157b952d6SSatish Balay } 105257b952d6SSatish Balay else { 105357b952d6SSatish Balay /* receive numeric values */ 105457b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 105557b952d6SSatish Balay 105657b952d6SSatish Balay /* receive message of values*/ 105757b952d6SSatish Balay vals = buf; 1058cee3aa6bSSatish Balay mycols = ibuf; 105957b952d6SSatish Balay MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 106057b952d6SSatish Balay MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1061cee3aa6bSSatish Balay if (maxnz != nz) SETERRQ(1,"MatLoad_MPIBAIJ:something is wrong with file"); 106257b952d6SSatish Balay 106357b952d6SSatish Balay /* insert into matrix */ 106457b952d6SSatish Balay jj = rstart*bs; 1065cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 106657b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 106757b952d6SSatish Balay mycols += locrowlens[i]; 106857b952d6SSatish Balay vals += locrowlens[i]; 106957b952d6SSatish Balay jj++; 107057b952d6SSatish Balay } 107157b952d6SSatish Balay } 107257b952d6SSatish Balay PetscFree(locrowlens); 107357b952d6SSatish Balay PetscFree(buf); 107457b952d6SSatish Balay PetscFree(ibuf); 107557b952d6SSatish Balay PetscFree(rowners); 107657b952d6SSatish Balay PetscFree(dlens); 1077cee3aa6bSSatish Balay PetscFree(mask); 107857b952d6SSatish Balay ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 107957b952d6SSatish Balay ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 108057b952d6SSatish Balay return 0; 108157b952d6SSatish Balay } 108257b952d6SSatish Balay 108357b952d6SSatish Balay 1084