1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 614e879edeSHong Zhang PetscScalar *va, *vv; 624e879edeSHong Zhang Vec vB, vA; 634e879edeSHong Zhang const PetscScalar *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 101d71ae5a4SJacob Faibussowitsch { 1027fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1037fc3c18eSBarry Smith 1047fc3c18eSBarry Smith PetscFunctionBegin; 1059566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1069566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087fc3c18eSBarry Smith } 1097fc3c18eSBarry Smith 11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 111d71ae5a4SJacob Faibussowitsch { 1127fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1137fc3c18eSBarry Smith 1147fc3c18eSBarry Smith PetscFunctionBegin; 1159566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1169566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1187fc3c18eSBarry Smith } 1197fc3c18eSBarry Smith 120537820f0SBarry Smith /* 121537820f0SBarry Smith Local utility routine that creates a mapping from the global column 12257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 123e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 12457b952d6SSatish Balay length of colmap equals the global matrix length. 12557b952d6SSatish Balay */ 126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 127d71ae5a4SJacob Faibussowitsch { 12857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 12957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 130d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 13157b952d6SSatish Balay 132d64ed03dSBarry Smith PetscFunctionBegin; 133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 134eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 135c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 13648e59246SSatish Balay #else 1379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 138928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 13948e59246SSatish Balay #endif 1403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14157b952d6SSatish Balay } 14257b952d6SSatish Balay 143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 144a8f51744SPierre Jolivet do { \ 14580c1aa95SSatish Balay brow = row / bs; \ 1468e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1478e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1489371c9d4SSatish Balay rmax = aimax[brow]; \ 1499371c9d4SSatish Balay nrow = ailen[brow]; \ 15080c1aa95SSatish Balay bcol = col / bs; \ 1519371c9d4SSatish Balay ridx = row % bs; \ 1529371c9d4SSatish Balay cidx = col % bs; \ 1539371c9d4SSatish Balay low = 0; \ 1549371c9d4SSatish Balay high = nrow; \ 155ab26458aSBarry Smith while (high - low > 3) { \ 156ab26458aSBarry Smith t = (low + high) / 2; \ 157ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 158ab26458aSBarry Smith else low = t; \ 159ab26458aSBarry Smith } \ 160ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 16180c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 16280c1aa95SSatish Balay if (rp[_i] == bcol) { \ 16380c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 164eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 165eada6651SSatish Balay else *bap = value; \ 166ac7a638eSSatish Balay goto a_noinsert; \ 16780c1aa95SSatish Balay } \ 16880c1aa95SSatish Balay } \ 16989280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1705f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 171fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 17280c1aa95SSatish Balay N = nrow++ - 1; \ 17380c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1759566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1769566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 17780c1aa95SSatish Balay rp[_i] = bcol; \ 17880c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 179ac7a638eSSatish Balay a_noinsert:; \ 18080c1aa95SSatish Balay ailen[brow] = nrow; \ 181a8f51744SPierre Jolivet } while (0) 18257b952d6SSatish Balay 183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 184a8f51744SPierre Jolivet do { \ 185ac7a638eSSatish Balay brow = row / bs; \ 1868e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 1878e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 1889371c9d4SSatish Balay rmax = bimax[brow]; \ 1899371c9d4SSatish Balay nrow = bilen[brow]; \ 190ac7a638eSSatish Balay bcol = col / bs; \ 1919371c9d4SSatish Balay ridx = row % bs; \ 1929371c9d4SSatish Balay cidx = col % bs; \ 1939371c9d4SSatish Balay low = 0; \ 1949371c9d4SSatish Balay high = nrow; \ 195ac7a638eSSatish Balay while (high - low > 3) { \ 196ac7a638eSSatish Balay t = (low + high) / 2; \ 197ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 198ac7a638eSSatish Balay else low = t; \ 199ac7a638eSSatish Balay } \ 200ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 201ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 202ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 203ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 204ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 205ac7a638eSSatish Balay else *bap = value; \ 206ac7a638eSSatish Balay goto b_noinsert; \ 207ac7a638eSSatish Balay } \ 208ac7a638eSSatish Balay } \ 20989280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2105f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 211fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 212ac7a638eSSatish Balay N = nrow++ - 1; \ 213ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2149566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2159566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 217ac7a638eSSatish Balay rp[_i] = bcol; \ 218ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 219ac7a638eSSatish Balay b_noinsert:; \ 220ac7a638eSSatish Balay bilen[brow] = nrow; \ 221a8f51744SPierre Jolivet } while (0) 222ac7a638eSSatish Balay 223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 224d71ae5a4SJacob Faibussowitsch { 22557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 22693fea6afSBarry Smith MatScalar value; 227ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 228b24ad042SBarry Smith PetscInt i, j, row, col; 229d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 230d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 231d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 23257b952d6SSatish Balay 233eada6651SSatish Balay /* Some Variables required in the macro */ 23480c1aa95SSatish Balay Mat A = baij->A; 23580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 236b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2373eda8832SBarry Smith MatScalar *aa = a->a; 238ac7a638eSSatish Balay 239ac7a638eSSatish Balay Mat B = baij->B; 240ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 241b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2423eda8832SBarry Smith MatScalar *ba = b->a; 243ac7a638eSSatish Balay 244b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 245b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2463eda8832SBarry Smith MatScalar *ap, *bap; 24780c1aa95SSatish Balay 248d64ed03dSBarry Smith PetscFunctionBegin; 24957b952d6SSatish Balay for (i = 0; i < m; i++) { 2505ef9f2a5SBarry Smith if (im[i] < 0) continue; 2515f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 25257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 25357b952d6SSatish Balay row = im[i] - rstart_orig; 25457b952d6SSatish Balay for (j = 0; j < n; j++) { 25557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 25657b952d6SSatish Balay col = in[j] - cstart_orig; 257db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 258db4deed7SKarl Rupp else value = v[i + j * m]; 259d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 260f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 261f7d195e4SLawrence Mitchell continue; 262f7d195e4SLawrence Mitchell } else { 263f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 26457b952d6SSatish Balay if (mat->was_assembled) { 26548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 267eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 268bba1ac68SSatish Balay col = col - 1; 26948e59246SSatish Balay #else 270bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 27148e59246SSatish Balay #endif 272c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 2739566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2748295de27SSatish Balay col = in[j]; 2759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2769bf004c3SSatish Balay B = baij->B; 2779bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2789371c9d4SSatish Balay bimax = b->imax; 2799371c9d4SSatish Balay bi = b->i; 2809371c9d4SSatish Balay bilen = b->ilen; 2819371c9d4SSatish Balay bj = b->j; 2829bf004c3SSatish Balay ba = b->a; 283f7d195e4SLawrence Mitchell } else { 284f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 285f7d195e4SLawrence Mitchell col += in[j] % bs; 286f7d195e4SLawrence Mitchell } 2878295de27SSatish Balay } else col = in[j]; 288db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 289db4deed7SKarl Rupp else value = v[i + j * m]; 290d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2919566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 29257b952d6SSatish Balay } 29357b952d6SSatish Balay } 294d64ed03dSBarry Smith } else { 2955f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 29690f02eecSBarry Smith if (!baij->donotstash) { 2975080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 298ff2fd236SBarry Smith if (roworiented) { 2999566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 300ff2fd236SBarry Smith } else { 3019566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 30257b952d6SSatish Balay } 30357b952d6SSatish Balay } 30457b952d6SSatish Balay } 30590f02eecSBarry Smith } 3063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30757b952d6SSatish Balay } 30857b952d6SSatish Balay 309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 310d71ae5a4SJacob Faibussowitsch { 311880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3128ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 313880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3148ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 315880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 316880c6e6aSBarry Smith const PetscScalar *value = v; 317880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 318880c6e6aSBarry Smith 319880c6e6aSBarry Smith PetscFunctionBegin; 320880c6e6aSBarry Smith rp = aj + ai[row]; 321880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 322880c6e6aSBarry Smith rmax = imax[row]; 323880c6e6aSBarry Smith nrow = ailen[row]; 3248ab52850SBarry Smith value = v; 3258ab52850SBarry Smith low = 0; 3268ab52850SBarry Smith high = nrow; 327880c6e6aSBarry Smith while (high - low > 7) { 328880c6e6aSBarry Smith t = (low + high) / 2; 329880c6e6aSBarry Smith if (rp[t] > col) high = t; 330880c6e6aSBarry Smith else low = t; 331880c6e6aSBarry Smith } 332880c6e6aSBarry Smith for (i = low; i < high; i++) { 333880c6e6aSBarry Smith if (rp[i] > col) break; 334880c6e6aSBarry Smith if (rp[i] == col) { 335880c6e6aSBarry Smith bap = ap + bs2 * i; 336880c6e6aSBarry Smith if (roworiented) { 337880c6e6aSBarry Smith if (is == ADD_VALUES) { 3388ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 339ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 340880c6e6aSBarry Smith } 341880c6e6aSBarry Smith } else { 3428ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 343ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 344880c6e6aSBarry Smith } 345880c6e6aSBarry Smith } 346880c6e6aSBarry Smith } else { 347880c6e6aSBarry Smith if (is == ADD_VALUES) { 3488ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 349ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 350880c6e6aSBarry Smith bap += bs; 351880c6e6aSBarry Smith } 352880c6e6aSBarry Smith } else { 3538ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 354ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 355880c6e6aSBarry Smith bap += bs; 356880c6e6aSBarry Smith } 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith goto noinsert2; 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3635f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 364880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3659371c9d4SSatish Balay N = nrow++ - 1; 3669371c9d4SSatish Balay high++; 367880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3689566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3699566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 370880c6e6aSBarry Smith rp[i] = col; 371880c6e6aSBarry Smith bap = ap + bs2 * i; 372880c6e6aSBarry Smith if (roworiented) { 3738ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 374ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith } else { 3778ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 378ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 379880c6e6aSBarry Smith } 380880c6e6aSBarry Smith } 381880c6e6aSBarry Smith noinsert2:; 382880c6e6aSBarry Smith ailen[row] = nrow; 3833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384880c6e6aSBarry Smith } 385880c6e6aSBarry Smith 3868ab52850SBarry Smith /* 3878ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3888ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3898ab52850SBarry Smith */ 39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 391d71ae5a4SJacob Faibussowitsch { 392ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 393dd6ea824SBarry Smith const PetscScalar *value; 394f15d580aSBarry Smith MatScalar *barray = baij->barray; 395ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 396899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 397899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 398d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 399ab26458aSBarry Smith 400b16ae2b1SBarry Smith PetscFunctionBegin; 40130793edcSSatish Balay if (!barray) { 4029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 40382502324SSatish Balay baij->barray = barray; 40430793edcSSatish Balay } 40530793edcSSatish Balay 40626fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 40726fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 40826fbe8dcSKarl Rupp 409ab26458aSBarry Smith for (i = 0; i < m; i++) { 4105ef9f2a5SBarry Smith if (im[i] < 0) continue; 4116bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 412ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 413ab26458aSBarry Smith row = im[i] - rstart; 414ab26458aSBarry Smith for (j = 0; j < n; j++) { 41515b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 41615b57d14SSatish Balay if ((roworiented) && (n == 1)) { 417f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 41815b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 419f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 42015b57d14SSatish Balay } else { /* Here a copy is required */ 421ab26458aSBarry Smith if (roworiented) { 42253ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 423ab26458aSBarry Smith } else { 42453ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 425abef11f7SSatish Balay } 42653ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 42726fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 42853ef36baSBarry Smith barray += bs; 42947513183SBarry Smith } 43030793edcSSatish Balay barray -= bs2; 43115b57d14SSatish Balay } 432abef11f7SSatish Balay 433abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 434abef11f7SSatish Balay col = in[j] - cstart; 4359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 436f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 437f7d195e4SLawrence Mitchell continue; 438f7d195e4SLawrence Mitchell } else { 439f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 440ab26458aSBarry Smith if (mat->was_assembled) { 44148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 442a5eb4965SSatish Balay 4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 444aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4459371c9d4SSatish Balay { 4469371c9d4SSatish Balay PetscInt data; 447eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 44808401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 449fa46199cSSatish Balay } 45048e59246SSatish Balay #else 45108401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 452a5eb4965SSatish Balay #endif 45348e59246SSatish Balay #endif 454aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 455eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 456fa46199cSSatish Balay col = (col - 1) / bs; 45748e59246SSatish Balay #else 458a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 45948e59246SSatish Balay #endif 4600e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 4619566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 462ab26458aSBarry Smith col = in[j]; 4635f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 464db4deed7SKarl Rupp } else col = in[j]; 4659566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 466ab26458aSBarry Smith } 467ab26458aSBarry Smith } 468d64ed03dSBarry Smith } else { 4695f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 470ab26458aSBarry Smith if (!baij->donotstash) { 471ff2fd236SBarry Smith if (roworiented) { 4729566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 473ff2fd236SBarry Smith } else { 4749566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 475ff2fd236SBarry Smith } 476abef11f7SSatish Balay } 477ab26458aSBarry Smith } 478ab26458aSBarry Smith } 4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480ab26458aSBarry Smith } 4816fa18ffdSBarry Smith 4820bdbc534SSatish Balay #define HASH_KEY 0.6180339887 483b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 484b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 485b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 48666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 487d71ae5a4SJacob Faibussowitsch { 4880bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 489ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 490b24ad042SBarry Smith PetscInt i, j, row, col; 491d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 492d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 493d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 494329f5518SBarry Smith PetscReal tmp; 4953eda8832SBarry Smith MatScalar **HD = baij->hd, value; 496b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4970bdbc534SSatish Balay 4980bdbc534SSatish Balay PetscFunctionBegin; 4990bdbc534SSatish Balay for (i = 0; i < m; i++) { 50076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5015f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5025f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50376bd3646SJed Brown } 5040bdbc534SSatish Balay row = im[i]; 505c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5060bdbc534SSatish Balay for (j = 0; j < n; j++) { 5070bdbc534SSatish Balay col = in[j]; 508db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 509db4deed7SKarl Rupp else value = v[i + j * m]; 510b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 511c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 512c2760754SSatish Balay h1 = HASH(size, key, tmp); 5130bdbc534SSatish Balay 514c2760754SSatish Balay idx = h1; 51576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 516187ce0cbSSatish Balay insert_ct++; 517187ce0cbSSatish Balay total_ct++; 518187ce0cbSSatish Balay if (HT[idx] != key) { 5199371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5209371c9d4SSatish Balay ; 521187ce0cbSSatish Balay if (idx == size) { 5229371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5239371c9d4SSatish Balay ; 5245f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 525187ce0cbSSatish Balay } 526187ce0cbSSatish Balay } 52776bd3646SJed Brown } else if (HT[idx] != key) { 5289371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 5299371c9d4SSatish Balay ; 530c2760754SSatish Balay if (idx == size) { 5319371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 5329371c9d4SSatish Balay ; 5335f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 534c2760754SSatish Balay } 535c2760754SSatish Balay } 536c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 537c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 538c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5390bdbc534SSatish Balay } 54026fbe8dcSKarl Rupp } else if (!baij->donotstash) { 541ff2fd236SBarry Smith if (roworiented) { 5429566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 543ff2fd236SBarry Smith } else { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5450bdbc534SSatish Balay } 5460bdbc534SSatish Balay } 5470bdbc534SSatish Balay } 54876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 549abf3b562SBarry Smith baij->ht_total_ct += total_ct; 550abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55176bd3646SJed Brown } 5523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5530bdbc534SSatish Balay } 5540bdbc534SSatish Balay 55566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 556d71ae5a4SJacob Faibussowitsch { 5570bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 558ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 559b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 560899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 561d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 562b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 563329f5518SBarry Smith PetscReal tmp; 5643eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 565dd6ea824SBarry Smith const PetscScalar *v_t, *value; 566b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5670bdbc534SSatish Balay 568d0a41580SSatish Balay PetscFunctionBegin; 56926fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57026fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57126fbe8dcSKarl Rupp 5720bdbc534SSatish Balay for (i = 0; i < m; i++) { 57376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5745f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5755f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57676bd3646SJed Brown } 5770bdbc534SSatish Balay row = im[i]; 578ab715e2cSSatish Balay v_t = v + i * nbs2; 579c2760754SSatish Balay if (row >= rstart && row < rend) { 5800bdbc534SSatish Balay for (j = 0; j < n; j++) { 5810bdbc534SSatish Balay col = in[j]; 5820bdbc534SSatish Balay 5830bdbc534SSatish Balay /* Look up into the Hash Table */ 584c2760754SSatish Balay key = row * Nbs + col + 1; 585c2760754SSatish Balay h1 = HASH(size, key, tmp); 5860bdbc534SSatish Balay 587c2760754SSatish Balay idx = h1; 58876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 589187ce0cbSSatish Balay total_ct++; 590187ce0cbSSatish Balay insert_ct++; 591187ce0cbSSatish Balay if (HT[idx] != key) { 5929371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5939371c9d4SSatish Balay ; 594187ce0cbSSatish Balay if (idx == size) { 5959371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5969371c9d4SSatish Balay ; 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 6019371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 6029371c9d4SSatish Balay ; 603c2760754SSatish Balay if (idx == size) { 6049371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 6059371c9d4SSatish Balay ; 6065f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 607c2760754SSatish Balay } 608c2760754SSatish Balay } 609c2760754SSatish Balay baij_a = HD[idx]; 6100bdbc534SSatish Balay if (roworiented) { 611c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 612187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 613187ce0cbSSatish Balay value = v_t; 614187ce0cbSSatish Balay v_t += bs; 615fef45726SSatish Balay if (addv == ADD_VALUES) { 616c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 617ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 618b4cc0f5aSSatish Balay } 619fef45726SSatish Balay } else { 620c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 621ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 622fef45726SSatish Balay } 623fef45726SSatish Balay } 6240bdbc534SSatish Balay } else { 6250bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 626fef45726SSatish Balay if (addv == ADD_VALUES) { 627b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 628ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 629fef45726SSatish Balay } 630fef45726SSatish Balay } else { 631fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 632ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 633b4cc0f5aSSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } 6360bdbc534SSatish Balay } 6370bdbc534SSatish Balay } else { 6380bdbc534SSatish Balay if (!baij->donotstash) { 6390bdbc534SSatish Balay if (roworiented) { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } else { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 6450bdbc534SSatish Balay } 6460bdbc534SSatish Balay } 64776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 648abf3b562SBarry Smith baij->ht_total_ct += total_ct; 649abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 65076bd3646SJed Brown } 6513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6520bdbc534SSatish Balay } 653133cdb44SSatish Balay 65466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 655d71ae5a4SJacob Faibussowitsch { 656d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 657d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 658d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 659d6de1c52SSatish Balay 660133cdb44SSatish Balay PetscFunctionBegin; 661d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 664d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 665d6de1c52SSatish Balay row = idxm[i] - bsrstart; 666d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 669d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 670d6de1c52SSatish Balay col = idxn[j] - bscstart; 6719566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 672d64ed03dSBarry Smith } else { 67348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 674aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 675eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 676fa46199cSSatish Balay data--; 67748e59246SSatish Balay #else 67848e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67948e59246SSatish Balay #endif 68048e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 681d9d09a02SSatish Balay else { 68248e59246SSatish Balay col = data + idxn[j] % bs; 6839566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 684d6de1c52SSatish Balay } 685d6de1c52SSatish Balay } 686d6de1c52SSatish Balay } 687f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 688d6de1c52SSatish Balay } 6893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 690d6de1c52SSatish Balay } 691d6de1c52SSatish Balay 69266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 693d71ae5a4SJacob Faibussowitsch { 694d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 695d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 696d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 697329f5518SBarry Smith PetscReal sum = 0.0; 6983eda8832SBarry Smith MatScalar *v; 699d6de1c52SSatish Balay 700d64ed03dSBarry Smith PetscFunctionBegin; 701d6de1c52SSatish Balay if (baij->size == 1) { 7029566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 703d6de1c52SSatish Balay } else { 704d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 705d6de1c52SSatish Balay v = amat->a; 7068a62d963SHong Zhang nz = amat->nz * bs2; 7078a62d963SHong Zhang for (i = 0; i < nz; i++) { 7089371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7099371c9d4SSatish Balay v++; 710d6de1c52SSatish Balay } 711d6de1c52SSatish Balay v = bmat->a; 7128a62d963SHong Zhang nz = bmat->nz * bs2; 7138a62d963SHong Zhang for (i = 0; i < nz; i++) { 7149371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7159371c9d4SSatish Balay v++; 716d6de1c52SSatish Balay } 7171c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7188f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7198a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7208a62d963SHong Zhang PetscReal *tmp, *tmp2; 721899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7229566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7249371c9d4SSatish Balay v = amat->a; 7259371c9d4SSatish Balay jj = amat->j; 7268a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7278a62d963SHong Zhang for (j = 0; j < bs; j++) { 7288a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7298a62d963SHong Zhang for (row = 0; row < bs; row++) { 7309371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7319371c9d4SSatish Balay v++; 7328a62d963SHong Zhang } 7338a62d963SHong Zhang } 7348a62d963SHong Zhang jj++; 7358a62d963SHong Zhang } 7369371c9d4SSatish Balay v = bmat->a; 7379371c9d4SSatish Balay jj = bmat->j; 7388a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7398a62d963SHong Zhang for (j = 0; j < bs; j++) { 7408a62d963SHong Zhang col = bs * garray[*jj] + j; 7418a62d963SHong Zhang for (row = 0; row < bs; row++) { 7429371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7439371c9d4SSatish Balay v++; 7448a62d963SHong Zhang } 7458a62d963SHong Zhang } 7468a62d963SHong Zhang jj++; 7478a62d963SHong Zhang } 7481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7498a62d963SHong Zhang *nrm = 0.0; 750d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7518a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7528a62d963SHong Zhang } 7539566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7549566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7558a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 756577dd1f9SKris Buschelman PetscReal *sums; 7579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7588a62d963SHong Zhang sum = 0.0; 7598a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7608a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7618a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7628a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7638a62d963SHong Zhang for (i = 0; i < nz; i++) { 7648a62d963SHong Zhang for (col = 0; col < bs; col++) { 7658a62d963SHong Zhang for (row = 0; row < bs; row++) { 7669371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7679371c9d4SSatish Balay v++; 7688a62d963SHong Zhang } 7698a62d963SHong Zhang } 7708a62d963SHong Zhang } 7718a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7728a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7738a62d963SHong Zhang for (i = 0; i < nz; i++) { 7748a62d963SHong Zhang for (col = 0; col < bs; col++) { 7758a62d963SHong Zhang for (row = 0; row < bs; row++) { 7769371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7779371c9d4SSatish Balay v++; 7788a62d963SHong Zhang } 7798a62d963SHong Zhang } 7808a62d963SHong Zhang } 7818a62d963SHong Zhang for (row = 0; row < bs; row++) { 7828a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7838a62d963SHong Zhang } 7848a62d963SHong Zhang } 7851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7869566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 787ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 788d64ed03dSBarry Smith } 7893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 790d6de1c52SSatish Balay } 79157b952d6SSatish Balay 792fef45726SSatish Balay /* 793fef45726SSatish Balay Creates the hash table, and sets the table 794fef45726SSatish Balay This table is created only once. 795fef45726SSatish Balay If new entried need to be added to the matrix 796fef45726SSatish Balay then the hash table has to be destroyed and 797fef45726SSatish Balay recreated. 798fef45726SSatish Balay */ 79966976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 800d71ae5a4SJacob Faibussowitsch { 801596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 802596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 803596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 804b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 805fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 806899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 807b24ad042SBarry Smith PetscInt *HT, key; 8083eda8832SBarry Smith MatScalar **HD; 809329f5518SBarry Smith PetscReal tmp; 8106cf91177SBarry Smith #if defined(PETSC_USE_INFO) 811b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8124a15367fSSatish Balay #endif 813fef45726SSatish Balay 814d64ed03dSBarry Smith PetscFunctionBegin; 8153ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 816fef45726SSatish Balay 817fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 818fca92195SBarry Smith ht_size = baij->ht_size; 8190bdbc534SSatish Balay 820fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8219566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 822b9e4cc15SSatish Balay HD = baij->hd; 823a07cd24cSSatish Balay HT = baij->ht; 824b9e4cc15SSatish Balay 825596b8d2eSBarry Smith /* Loop Over A */ 8260bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 827596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8280bdbc534SSatish Balay row = i + rstart; 8290bdbc534SSatish Balay col = aj[j] + cstart; 830596b8d2eSBarry Smith 831187ce0cbSSatish Balay key = row * Nbs + col + 1; 832fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 833fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 834fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 835fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 836fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 837596b8d2eSBarry Smith break; 8386cf91177SBarry Smith #if defined(PETSC_USE_INFO) 839187ce0cbSSatish Balay } else { 840187ce0cbSSatish Balay ct++; 841187ce0cbSSatish Balay #endif 842596b8d2eSBarry Smith } 843187ce0cbSSatish Balay } 8446cf91177SBarry Smith #if defined(PETSC_USE_INFO) 845187ce0cbSSatish Balay if (k > max) max = k; 846187ce0cbSSatish Balay #endif 847596b8d2eSBarry Smith } 848596b8d2eSBarry Smith } 849596b8d2eSBarry Smith /* Loop Over B */ 8500bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 851596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8520bdbc534SSatish Balay row = i + rstart; 8530bdbc534SSatish Balay col = garray[bj[j]]; 854187ce0cbSSatish Balay key = row * Nbs + col + 1; 855fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 856fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 857fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 858fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 859fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 860596b8d2eSBarry Smith break; 8616cf91177SBarry Smith #if defined(PETSC_USE_INFO) 862187ce0cbSSatish Balay } else { 863187ce0cbSSatish Balay ct++; 864187ce0cbSSatish Balay #endif 865596b8d2eSBarry Smith } 866187ce0cbSSatish Balay } 8676cf91177SBarry Smith #if defined(PETSC_USE_INFO) 868187ce0cbSSatish Balay if (k > max) max = k; 869187ce0cbSSatish Balay #endif 870596b8d2eSBarry Smith } 871596b8d2eSBarry Smith } 872596b8d2eSBarry Smith 873596b8d2eSBarry Smith /* Print Summary */ 8746cf91177SBarry Smith #if defined(PETSC_USE_INFO) 875fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87626fbe8dcSKarl Rupp if (HT[i]) j++; 877c38d4ed2SBarry Smith } 8789566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 879187ce0cbSSatish Balay #endif 8803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 881596b8d2eSBarry Smith } 88257b952d6SSatish Balay 88366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 884d71ae5a4SJacob Faibussowitsch { 885bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 886b24ad042SBarry Smith PetscInt nstash, reallocs; 887bbb85fb3SSatish Balay 888bbb85fb3SSatish Balay PetscFunctionBegin; 8893ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 890bbb85fb3SSatish Balay 8919566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8939566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8949566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8959566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8969566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 898bbb85fb3SSatish Balay } 899bbb85fb3SSatish Balay 90066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 901d71ae5a4SJacob Faibussowitsch { 902bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90391c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 904b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 905e44c0bd4SBarry Smith PetscInt *row, *col; 906ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9073eda8832SBarry Smith MatScalar *val; 908b24ad042SBarry Smith PetscMPIInt n; 909bbb85fb3SSatish Balay 910bbb85fb3SSatish Balay PetscFunctionBegin; 9115fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9124cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 913a2d1c673SSatish Balay while (1) { 9149566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 915a2d1c673SSatish Balay if (!flg) break; 916a2d1c673SSatish Balay 917bbb85fb3SSatish Balay for (i = 0; i < n;) { 918bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92026fbe8dcSKarl Rupp if (row[j] != rstart) break; 92126fbe8dcSKarl Rupp } 922bbb85fb3SSatish Balay if (j < n) ncols = j - i; 923bbb85fb3SSatish Balay else ncols = n - i; 924bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9259566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 926bbb85fb3SSatish Balay i = j; 927bbb85fb3SSatish Balay } 928bbb85fb3SSatish Balay } 9299566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 930a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9315e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 932a2d1c673SSatish Balay restore the original flags */ 933a2d1c673SSatish Balay r1 = baij->roworiented; 934a2d1c673SSatish Balay r2 = a->roworiented; 93591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93626fbe8dcSKarl Rupp 9377c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9387c922b88SBarry Smith a->roworiented = PETSC_FALSE; 9395e116b59SBarry Smith (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; 940a2d1c673SSatish Balay while (1) { 9419566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 942a2d1c673SSatish Balay if (!flg) break; 943a2d1c673SSatish Balay 944a2d1c673SSatish Balay for (i = 0; i < n;) { 945a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94726fbe8dcSKarl Rupp if (row[j] != rstart) break; 94826fbe8dcSKarl Rupp } 949a2d1c673SSatish Balay if (j < n) ncols = j - i; 950a2d1c673SSatish Balay else ncols = n - i; 9519566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 952a2d1c673SSatish Balay i = j; 953a2d1c673SSatish Balay } 954a2d1c673SSatish Balay } 9559566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95626fbe8dcSKarl Rupp 957a2d1c673SSatish Balay baij->roworiented = r1; 958a2d1c673SSatish Balay a->roworiented = r2; 9595e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 960bbb85fb3SSatish Balay } 961bbb85fb3SSatish Balay 9629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 964bbb85fb3SSatish Balay 965bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9666aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 967bbb85fb3SSatish Balay /* 968bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 969bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 970bbb85fb3SSatish Balay */ 971bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9725f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97348a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 974bbb85fb3SSatish Balay } 975bbb85fb3SSatish Balay 97648a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 979bbb85fb3SSatish Balay 9806cf91177SBarry Smith #if defined(PETSC_USE_INFO) 981bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9829566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98326fbe8dcSKarl Rupp 984bbb85fb3SSatish Balay baij->ht_total_ct = 0; 985bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 986bbb85fb3SSatish Balay } 987bbb85fb3SSatish Balay #endif 988bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9899566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99026fbe8dcSKarl Rupp 991bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 992bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 993bbb85fb3SSatish Balay } 994bbb85fb3SSatish Balay 9959566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99626fbe8dcSKarl Rupp 997f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9984f9cfa9eSBarry Smith 9994f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 10004f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 1001e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 10021c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1003e56f5c9eSBarry Smith } 10043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1005bbb85fb3SSatish Balay } 100657b952d6SSatish Balay 10077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10089804daf3SBarry Smith #include <petscdraw.h> 1009d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1010d71ae5a4SJacob Faibussowitsch { 101157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10127da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1013d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1014ace3abfcSBarry Smith PetscBool iascii, isdraw; 1015b0a32e0cSBarry Smith PetscViewer sviewer; 1016f3ef73ceSBarry Smith PetscViewerFormat format; 101757b952d6SSatish Balay 1018d64ed03dSBarry Smith PetscFunctionBegin; 10199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 102132077d6dSBarry Smith if (iascii) { 10229566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1023456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10244e220ebcSLois Curfman McInnes MatInfo info; 10259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10269566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10289371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10299371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10309566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10329566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10349566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10379566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1039fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104204929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104457b952d6SSatish Balay } 104557b952d6SSatish Balay } 104657b952d6SSatish Balay 10470f5bd95cSBarry Smith if (isdraw) { 1048b0a32e0cSBarry Smith PetscDraw draw; 1049ace3abfcSBarry Smith PetscBool isnull; 10509566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10519566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10523ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105357b952d6SSatish Balay } 105457b952d6SSatish Balay 10557da1fb6eSBarry Smith { 105657b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105757b952d6SSatish Balay Mat A; 105857b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1059d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10603eda8832SBarry Smith MatScalar *a; 10613e219373SBarry Smith const char *matname; 106257b952d6SSatish Balay 1063f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1064f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10659566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1066dd400576SPatrick Sanan if (rank == 0) { 10679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1068d64ed03dSBarry Smith } else { 10699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 107057b952d6SSatish Balay } 10719566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10729566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10739566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107457b952d6SSatish Balay 107557b952d6SSatish Balay /* copy over the A part */ 107657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10779371c9d4SSatish Balay ai = Aloc->i; 10789371c9d4SSatish Balay aj = Aloc->j; 10799371c9d4SSatish Balay a = Aloc->a; 10809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 108157b952d6SSatish Balay 108257b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1083899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108426fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108557b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1086899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108757b952d6SSatish Balay for (k = 0; k < bs; k++) { 10889566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10899371c9d4SSatish Balay col++; 10909371c9d4SSatish Balay a += bs; 109157b952d6SSatish Balay } 109257b952d6SSatish Balay } 109357b952d6SSatish Balay } 109457b952d6SSatish Balay /* copy over the B part */ 109557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10969371c9d4SSatish Balay ai = Aloc->i; 10979371c9d4SSatish Balay aj = Aloc->j; 10989371c9d4SSatish Balay a = Aloc->a; 109957b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1100899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 110126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 110257b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110357b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110457b952d6SSatish Balay for (k = 0; k < bs; k++) { 11059566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11069371c9d4SSatish Balay col++; 11079371c9d4SSatish Balay a += bs; 110857b952d6SSatish Balay } 110957b952d6SSatish Balay } 111057b952d6SSatish Balay } 11119566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111455843e3eSBarry Smith /* 111555843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1116b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111755843e3eSBarry Smith */ 11189566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111923a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1120dd400576SPatrick Sanan if (rank == 0) { 112123a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname)); 11229566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer)); 112357b952d6SSatish Balay } 11249566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112657b952d6SSatish Balay } 11273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112857b952d6SSatish Balay } 112957b952d6SSatish Balay 1130618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1131d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1132d71ae5a4SJacob Faibussowitsch { 1133b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1134b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1135b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1136b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113717a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 113817a3732bSBarry Smith PetscInt64 nz, hnz; 1139b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1140b51a4376SLisandro Dalcin PetscScalar *matvals; 114117a3732bSBarry Smith PetscMPIInt rank; 1142660746e0SBarry Smith 1143660746e0SBarry Smith PetscFunctionBegin; 11449566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1145b51a4376SLisandro Dalcin 1146b51a4376SLisandro Dalcin M = mat->rmap->N; 1147b51a4376SLisandro Dalcin N = mat->cmap->N; 1148b51a4376SLisandro Dalcin m = mat->rmap->n; 1149b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1150b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1151b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1152b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1153b51a4376SLisandro Dalcin 1154b51a4376SLisandro Dalcin /* write matrix header */ 1155660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11569371c9d4SSatish Balay header[1] = M; 11579371c9d4SSatish Balay header[2] = N; 115817a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115917a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 116017a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11619566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1162660746e0SBarry Smith 1163b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1165b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11669371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11679566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11689566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1169660746e0SBarry Smith 1170b51a4376SLisandro Dalcin /* fill in and store column indices */ 11719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1172b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1173b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1174b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1175b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11769371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1177660746e0SBarry Smith } 1178b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11799371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1180b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11819371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1182660746e0SBarry Smith } 1183660746e0SBarry Smith } 118417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 11859566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11869566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1187660746e0SBarry Smith 1188b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1190b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1191b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1192b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1193b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11949371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1195660746e0SBarry Smith } 1196b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11979371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1198b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11999371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1200660746e0SBarry Smith } 1201b51a4376SLisandro Dalcin } 12029566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12039566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1204660746e0SBarry Smith 1205b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12069566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1208660746e0SBarry Smith } 1209660746e0SBarry Smith 1210d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1211d71ae5a4SJacob Faibussowitsch { 1212ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121357b952d6SSatish Balay 1214d64ed03dSBarry Smith PetscFunctionBegin; 12159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1219660746e0SBarry Smith if (iascii || isdraw || issocket) { 12209566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12211baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122357b952d6SSatish Balay } 122457b952d6SSatish Balay 122566976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1226d71ae5a4SJacob Faibussowitsch { 1227cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1228b24ad042SBarry Smith PetscInt nt; 1229cee3aa6bSSatish Balay 1230d64ed03dSBarry Smith PetscFunctionBegin; 12319566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12325f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1234da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12359566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12369566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12389566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1240cee3aa6bSSatish Balay } 1241cee3aa6bSSatish Balay 124266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1243d71ae5a4SJacob Faibussowitsch { 1244cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1245d64ed03dSBarry Smith 1246d64ed03dSBarry Smith PetscFunctionBegin; 12479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12489566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12499566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12509566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1252cee3aa6bSSatish Balay } 1253cee3aa6bSSatish Balay 125466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1255d71ae5a4SJacob Faibussowitsch { 1256cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1257cee3aa6bSSatish Balay 1258d64ed03dSBarry Smith PetscFunctionBegin; 1259cee3aa6bSSatish Balay /* do nondiagonal part */ 12609566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1261cee3aa6bSSatish Balay /* do local part */ 12629566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1263e4a140f6SJunchao Zhang /* add partial results together */ 12649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1267cee3aa6bSSatish Balay } 1268cee3aa6bSSatish Balay 126966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1270d71ae5a4SJacob Faibussowitsch { 1271cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1272cee3aa6bSSatish Balay 1273d64ed03dSBarry Smith PetscFunctionBegin; 1274cee3aa6bSSatish Balay /* do nondiagonal part */ 12759566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1276cee3aa6bSSatish Balay /* do local part */ 12779566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1278e4a140f6SJunchao Zhang /* add partial results together */ 12799566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12809566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1282cee3aa6bSSatish Balay } 1283cee3aa6bSSatish Balay 1284cee3aa6bSSatish Balay /* 1285cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1286cee3aa6bSSatish Balay diagonal block 1287cee3aa6bSSatish Balay */ 128866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1289d71ae5a4SJacob Faibussowitsch { 1290d64ed03dSBarry Smith PetscFunctionBegin; 12915f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12929566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1294cee3aa6bSSatish Balay } 1295cee3aa6bSSatish Balay 129666976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1297d71ae5a4SJacob Faibussowitsch { 1298cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1299d64ed03dSBarry Smith 1300d64ed03dSBarry Smith PetscFunctionBegin; 13019566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13029566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1304cee3aa6bSSatish Balay } 1305026e39d0SSatish Balay 1306d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1307d71ae5a4SJacob Faibussowitsch { 1308acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130987828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1310d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1311d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1312899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1313acdf5bf4SSatish Balay 1314d64ed03dSBarry Smith PetscFunctionBegin; 13155f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13165f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1317acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1318acdf5bf4SSatish Balay 1319acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1320acdf5bf4SSatish Balay /* 1321acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1322acdf5bf4SSatish Balay */ 1323acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1324b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1325bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1326acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132726fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1328acdf5bf4SSatish Balay } 13299566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1330acdf5bf4SSatish Balay } 1331d9d09a02SSatish Balay lrow = row - brstart; 1332acdf5bf4SSatish Balay 13339371c9d4SSatish Balay pvA = &vworkA; 13349371c9d4SSatish Balay pcA = &cworkA; 13359371c9d4SSatish Balay pvB = &vworkB; 13369371c9d4SSatish Balay pcB = &cworkB; 13379371c9d4SSatish Balay if (!v) { 13389371c9d4SSatish Balay pvA = NULL; 13399371c9d4SSatish Balay pvB = NULL; 13409371c9d4SSatish Balay } 13419371c9d4SSatish Balay if (!idx) { 13429371c9d4SSatish Balay pcA = NULL; 13439371c9d4SSatish Balay if (!v) pcB = NULL; 13449371c9d4SSatish Balay } 13459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13469566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1347acdf5bf4SSatish Balay nztot = nzA + nzB; 1348acdf5bf4SSatish Balay 1349acdf5bf4SSatish Balay cmap = mat->garray; 1350acdf5bf4SSatish Balay if (v || idx) { 1351acdf5bf4SSatish Balay if (nztot) { 1352acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1353b24ad042SBarry Smith PetscInt imark = -1; 1354acdf5bf4SSatish Balay if (v) { 1355acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1356acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1357d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1358acdf5bf4SSatish Balay else break; 1359acdf5bf4SSatish Balay } 1360acdf5bf4SSatish Balay imark = i; 1361acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1362acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1363acdf5bf4SSatish Balay } 1364acdf5bf4SSatish Balay if (idx) { 1365acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1366acdf5bf4SSatish Balay if (imark > -1) { 1367ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1368acdf5bf4SSatish Balay } else { 1369acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 137026fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1371acdf5bf4SSatish Balay else break; 1372acdf5bf4SSatish Balay } 1373acdf5bf4SSatish Balay imark = i; 1374acdf5bf4SSatish Balay } 1375d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1376d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1377acdf5bf4SSatish Balay } 1378d64ed03dSBarry Smith } else { 1379f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1380f4259b30SLisandro Dalcin if (v) *v = NULL; 1381d212a18eSSatish Balay } 1382acdf5bf4SSatish Balay } 1383acdf5bf4SSatish Balay *nz = nztot; 13849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13859566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1387acdf5bf4SSatish Balay } 1388acdf5bf4SSatish Balay 1389d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1390d71ae5a4SJacob Faibussowitsch { 1391acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1392d64ed03dSBarry Smith 1393d64ed03dSBarry Smith PetscFunctionBegin; 13945f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1395acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1397acdf5bf4SSatish Balay } 1398acdf5bf4SSatish Balay 139966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1400d71ae5a4SJacob Faibussowitsch { 140158667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1402d64ed03dSBarry Smith 1403d64ed03dSBarry Smith PetscFunctionBegin; 14049566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14059566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140758667388SSatish Balay } 14080ac07820SSatish Balay 140966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1410d71ae5a4SJacob Faibussowitsch { 14114e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14124e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14133966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14140ac07820SSatish Balay 1415d64ed03dSBarry Smith PetscFunctionBegin; 1416d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141726fbe8dcSKarl Rupp 14189566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141926fbe8dcSKarl Rupp 14209371c9d4SSatish Balay isend[0] = info->nz_used; 14219371c9d4SSatish Balay isend[1] = info->nz_allocated; 14229371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14239371c9d4SSatish Balay isend[3] = info->memory; 14249371c9d4SSatish Balay isend[4] = info->mallocs; 142526fbe8dcSKarl Rupp 14269566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142726fbe8dcSKarl Rupp 14289371c9d4SSatish Balay isend[0] += info->nz_used; 14299371c9d4SSatish Balay isend[1] += info->nz_allocated; 14309371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14319371c9d4SSatish Balay isend[3] += info->memory; 14329371c9d4SSatish Balay isend[4] += info->mallocs; 143326fbe8dcSKarl Rupp 14340ac07820SSatish Balay if (flag == MAT_LOCAL) { 14354e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14364e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14374e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14384e220ebcSLois Curfman McInnes info->memory = isend[3]; 14394e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14400ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 144226fbe8dcSKarl Rupp 14434e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14444e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14454e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14464e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14474e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14480ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14491c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 145026fbe8dcSKarl Rupp 14514e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14524e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14534e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14544e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14554e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145698921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14574e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14584e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14594e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14610ac07820SSatish Balay } 14620ac07820SSatish Balay 146366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1464d71ae5a4SJacob Faibussowitsch { 146558667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146658667388SSatish Balay 1467d64ed03dSBarry Smith PetscFunctionBegin; 146812c028f9SKris Buschelman switch (op) { 1469512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1472a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147312c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147443674050SBarry Smith MatCheckPreallocated(A, 1); 14759566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14769566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147712c028f9SKris Buschelman break; 147812c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147943674050SBarry Smith MatCheckPreallocated(A, 1); 14804e0d8c25SBarry Smith a->roworiented = flg; 148126fbe8dcSKarl Rupp 14829566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14839566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148412c028f9SKris Buschelman break; 14858c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1486d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1487d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1488d71ae5a4SJacob Faibussowitsch break; 1489d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1490d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1491d71ae5a4SJacob Faibussowitsch break; 149212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14934e0d8c25SBarry Smith a->ht_flag = flg; 1494abf3b562SBarry Smith a->ht_fact = 1.39; 149512c028f9SKris Buschelman break; 149677e54ba9SKris Buschelman case MAT_SYMMETRIC: 149777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14982188ac68SBarry Smith case MAT_HERMITIAN: 1499c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15002188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1501b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1502b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1503b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150477e54ba9SKris Buschelman break; 1505d71ae5a4SJacob Faibussowitsch default: 1506d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1507d64ed03dSBarry Smith } 15083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150958667388SSatish Balay } 151058667388SSatish Balay 151166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1512d71ae5a4SJacob Faibussowitsch { 15130ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15140ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15150ac07820SSatish Balay Mat B; 1516d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1517d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15183eda8832SBarry Smith MatScalar *a; 15190ac07820SSatish Balay 1520d64ed03dSBarry Smith PetscFunctionBegin; 15217fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1522cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15259566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15262e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15279566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1528fc4dec0aSBarry Smith } else { 1529fc4dec0aSBarry Smith B = *matout; 1530fc4dec0aSBarry Smith } 15310ac07820SSatish Balay 15320ac07820SSatish Balay /* copy over the A part */ 15330ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15349371c9d4SSatish Balay ai = Aloc->i; 15359371c9d4SSatish Balay aj = Aloc->j; 15369371c9d4SSatish Balay a = Aloc->a; 15379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15380ac07820SSatish Balay 15390ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1540899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15420ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1543899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15440ac07820SSatish Balay for (k = 0; k < bs; k++) { 15459566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154626fbe8dcSKarl Rupp 15479371c9d4SSatish Balay col++; 15489371c9d4SSatish Balay a += bs; 15490ac07820SSatish Balay } 15500ac07820SSatish Balay } 15510ac07820SSatish Balay } 15520ac07820SSatish Balay /* copy over the B part */ 15530ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15549371c9d4SSatish Balay ai = Aloc->i; 15559371c9d4SSatish Balay aj = Aloc->j; 15569371c9d4SSatish Balay a = Aloc->a; 15570ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1558899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155926fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15600ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15610ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15620ac07820SSatish Balay for (k = 0; k < bs; k++) { 15639566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156426fbe8dcSKarl Rupp col++; 156526fbe8dcSKarl Rupp a += bs; 15660ac07820SSatish Balay } 15670ac07820SSatish Balay } 15680ac07820SSatish Balay } 15699566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15720ac07820SSatish Balay 1573cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157448a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15760ac07820SSatish Balay } 15770e95ebc0SSatish Balay 157866976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1579d71ae5a4SJacob Faibussowitsch { 158036c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 158136c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1582b24ad042SBarry Smith PetscInt s1, s2, s3; 15830e95ebc0SSatish Balay 1584d64ed03dSBarry Smith PetscFunctionBegin; 15859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158636c4a09eSSatish Balay if (rr) { 15879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15885f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 158936c4a09eSSatish Balay /* Overlap communication with computation. */ 15909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 159136c4a09eSSatish Balay } 15920e95ebc0SSatish Balay if (ll) { 15939566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15945f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1595dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15960e95ebc0SSatish Balay } 159736c4a09eSSatish Balay /* scale the diagonal block */ 1598dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 159936c4a09eSSatish Balay 160036c4a09eSSatish Balay if (rr) { 160136c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 16029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1603dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160436c4a09eSSatish Balay } 16053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16060e95ebc0SSatish Balay } 16070e95ebc0SSatish Balay 160866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1609d71ae5a4SJacob Faibussowitsch { 16100ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 161165a92638SMatthew G. Knepley PetscInt *lrows; 16126e520ac8SStefano Zampini PetscInt r, len; 161394342113SStefano Zampini PetscBool cong; 16140ac07820SSatish Balay 1615d64ed03dSBarry Smith PetscFunctionBegin; 16166e520ac8SStefano Zampini /* get locally owned rows */ 16179566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 161897b48c8fSBarry Smith /* fix right hand side if needed */ 161997b48c8fSBarry Smith if (x && b) { 162065a92638SMatthew G. Knepley const PetscScalar *xx; 162165a92638SMatthew G. Knepley PetscScalar *bb; 162265a92638SMatthew G. Knepley 16239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16249566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 162565a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162897b48c8fSBarry Smith } 162997b48c8fSBarry Smith 16300ac07820SSatish Balay /* actually zap the local rows */ 163172dacd9aSBarry Smith /* 163272dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1633a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163472dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 163572dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163672dacd9aSBarry Smith 163772dacd9aSBarry Smith */ 16389c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16399566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16409566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 164194342113SStefano Zampini if ((diag != 0.0) && cong) { 16429566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1643f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16449566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 16455f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1646512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 164765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 164865a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1650a07cd24cSSatish Balay } 16519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16539c957beeSSatish Balay } else { 16549566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1655a07cd24cSSatish Balay } 16569566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16574f9cfa9eSBarry Smith 16584f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16599939a2d1SBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern || !((Mat_SeqBAIJ *)(l->A->data))->nonew) { 1660e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16611c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1662e56f5c9eSBarry Smith } 16633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16640ac07820SSatish Balay } 166572dacd9aSBarry Smith 166666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1667d71ae5a4SJacob Faibussowitsch { 16686f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1669131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1670131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16716f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16726f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16736f0a72daSMatthew G. Knepley PetscSF sf; 16746f0a72daSMatthew G. Knepley const PetscScalar *xx; 16756f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16766f0a72daSMatthew G. Knepley Vec xmask, lmask; 16776f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16786f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16796f0a72daSMatthew G. Knepley PetscScalar *aa; 16806f0a72daSMatthew G. Knepley 16816f0a72daSMatthew G. Knepley PetscFunctionBegin; 16826f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16846f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16866f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16876f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16885f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16895ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16909566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16915ba17502SJed Brown } 16926f0a72daSMatthew G. Knepley rrows[r].rank = p; 16936f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16946f0a72daSMatthew G. Knepley } 16959566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16969566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16976f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16989566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17009566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 17016f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17029371c9d4SSatish Balay for (r = 0; r < n; ++r) 17039371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17046f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17059566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17064cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 17079566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17089566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17099566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17106f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17156f0a72daSMatthew G. Knepley if (x) { 17169566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17179566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17199566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17206f0a72daSMatthew G. Knepley } 17219566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17224cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17236f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17246f0a72daSMatthew G. Knepley row = lrows[i]; 17256f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 17266f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs); 17276f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17286f0a72daSMatthew G. Knepley aa[0] = 0.0; 17296f0a72daSMatthew G. Knepley aa += bs; 17306f0a72daSMatthew G. Knepley } 17316f0a72daSMatthew G. Knepley } 17326f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17336f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17346f0a72daSMatthew G. Knepley row = i / bs; 17356f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17366f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17376f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17386f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17396f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k; 174089ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17416f0a72daSMatthew G. Knepley aa[0] = 0.0; 17426f0a72daSMatthew G. Knepley } 17436f0a72daSMatthew G. Knepley } 17446f0a72daSMatthew G. Knepley } 17456f0a72daSMatthew G. Knepley } 17466f0a72daSMatthew G. Knepley if (x) { 17479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17496f0a72daSMatthew G. Knepley } 17509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17534f9cfa9eSBarry Smith 17544f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17559939a2d1SBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->nonew) { 17564f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17571c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17584f9cfa9eSBarry Smith } 17593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17606f0a72daSMatthew G. Knepley } 17616f0a72daSMatthew G. Knepley 176266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1763d71ae5a4SJacob Faibussowitsch { 1764bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1765d64ed03dSBarry Smith 1766d64ed03dSBarry Smith PetscFunctionBegin; 17679566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1769bb5a7306SBarry Smith } 1770bb5a7306SBarry Smith 17716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17720ac07820SSatish Balay 177366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1774d71ae5a4SJacob Faibussowitsch { 17757fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17767fc3c18eSBarry Smith Mat a, b, c, d; 1777ace3abfcSBarry Smith PetscBool flg; 17787fc3c18eSBarry Smith 17797fc3c18eSBarry Smith PetscFunctionBegin; 17809371c9d4SSatish Balay a = matA->A; 17819371c9d4SSatish Balay b = matA->B; 17829371c9d4SSatish Balay c = matB->A; 17839371c9d4SSatish Balay d = matB->B; 17847fc3c18eSBarry Smith 17859566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178648a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17897fc3c18eSBarry Smith } 17907fc3c18eSBarry Smith 179166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1792d71ae5a4SJacob Faibussowitsch { 17933c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17943c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17953c896bc6SHong Zhang 17963c896bc6SHong Zhang PetscFunctionBegin; 17973c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17983c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17999566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 18003c896bc6SHong Zhang } else { 18019566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 18029566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18033c896bc6SHong Zhang } 18049566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18063c896bc6SHong Zhang } 1807273d9f13SBarry Smith 1808d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1809d71ae5a4SJacob Faibussowitsch { 1810001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18114de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18124de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18134de5dceeSHong Zhang 18144de5dceeSHong Zhang PetscFunctionBegin; 18159566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18174de5dceeSHong Zhang } 18184de5dceeSHong Zhang 181966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1820d71ae5a4SJacob Faibussowitsch { 18214fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18224fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18234fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1824b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18254fe895cdSHong Zhang 18264fe895cdSHong Zhang PetscFunctionBegin; 18274fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18284fe895cdSHong Zhang PetscScalar alpha = a; 18294fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18304fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18319566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1832792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18334fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18344fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18359566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1836792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18379566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1838ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18399566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18404fe895cdSHong Zhang } else { 18414de5dceeSHong Zhang Mat B; 18424de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18459566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18469566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18489566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18509566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18519566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18529566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18534de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18549566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18559566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18579566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18584fe895cdSHong Zhang } 18593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18604fe895cdSHong Zhang } 18614fe895cdSHong Zhang 186266976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1863d71ae5a4SJacob Faibussowitsch { 18645f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18655f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18662726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18672726fb6dSPierre Jolivet 18689566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18699566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18705f80ce2aSJacob Faibussowitsch } 18713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18722726fb6dSPierre Jolivet } 18732726fb6dSPierre Jolivet 187466976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1875d71ae5a4SJacob Faibussowitsch { 187699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187799cafbc1SBarry Smith 187899cafbc1SBarry Smith PetscFunctionBegin; 18799566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18809566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188299cafbc1SBarry Smith } 188399cafbc1SBarry Smith 188466976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1885d71ae5a4SJacob Faibussowitsch { 188699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188799cafbc1SBarry Smith 188899cafbc1SBarry Smith PetscFunctionBegin; 18899566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18909566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189299cafbc1SBarry Smith } 189399cafbc1SBarry Smith 189466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1895d71ae5a4SJacob Faibussowitsch { 18964aa3045dSJed Brown IS iscol_local; 18974aa3045dSJed Brown PetscInt csize; 18984aa3045dSJed Brown 18994aa3045dSJed Brown PetscFunctionBegin; 19009566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1901b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19035f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1904b79d0421SJed Brown } else { 19059566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1906b79d0421SJed Brown } 1907fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1908b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1911b79d0421SJed Brown } 19123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19134aa3045dSJed Brown } 191417df9f7cSHong Zhang 191582094794SBarry Smith /* 191682094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191782094794SBarry Smith in local and then by concatenating the local matrices the end result. 19187dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19198f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192082094794SBarry Smith */ 1921fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1922d71ae5a4SJacob Faibussowitsch { 192382094794SBarry Smith PetscMPIInt rank, size; 192482094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1925c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 192629dcf524SDmitry Karpeev Mat M, Mreuse; 192782094794SBarry Smith MatScalar *vwork, *aa; 1928ce94432eSBarry Smith MPI_Comm comm; 192929dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193082094794SBarry Smith Mat_SeqBAIJ *aij; 193182094794SBarry Smith 193282094794SBarry Smith PetscFunctionBegin; 19339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 193629dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193729dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19389566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1939864bd19bSPierre Jolivet if (isrow == iscol) { 1940864bd19bSPierre Jolivet iscol_new = isrow_new; 1941864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1942864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194382094794SBarry Smith 194482094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19459566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19465f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1947fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 194882094794SBarry Smith } else { 1949fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 195082094794SBarry Smith } 19519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195382094794SBarry Smith /* 195482094794SBarry Smith m - number of local rows 195582094794SBarry Smith n - number of columns (same on all processors) 195682094794SBarry Smith rstart - first row in new global matrix generated 195782094794SBarry Smith */ 19589566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19599566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 196082094794SBarry Smith m = m / bs; 196182094794SBarry Smith n = n / bs; 196282094794SBarry Smith 196382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196482094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 196582094794SBarry Smith ii = aij->i; 196682094794SBarry Smith jj = aij->j; 196782094794SBarry Smith 196882094794SBarry Smith /* 196982094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 197082094794SBarry Smith portions of the matrix in order to do correct preallocation 197182094794SBarry Smith */ 197282094794SBarry Smith 197382094794SBarry Smith /* first get start and end of "diagonal" columns */ 197482094794SBarry Smith if (csize == PETSC_DECIDE) { 19759566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197682094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197782094794SBarry Smith nlocal = m; 197882094794SBarry Smith } else { 197982094794SBarry Smith nlocal = n / size + ((n % size) > rank); 198082094794SBarry Smith } 198182094794SBarry Smith } else { 198282094794SBarry Smith nlocal = csize / bs; 198382094794SBarry Smith } 19849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 198582094794SBarry Smith rstart = rend - nlocal; 1986aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198782094794SBarry Smith 198882094794SBarry Smith /* next, compute all the lengths */ 19899566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 199082094794SBarry Smith for (i = 0; i < m; i++) { 199182094794SBarry Smith jend = ii[i + 1] - ii[i]; 199282094794SBarry Smith olen = 0; 199382094794SBarry Smith dlen = 0; 199482094794SBarry Smith for (j = 0; j < jend; j++) { 199582094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199682094794SBarry Smith else dlen++; 199782094794SBarry Smith jj++; 199882094794SBarry Smith } 199982094794SBarry Smith olens[i] = olen; 200082094794SBarry Smith dlens[i] = dlen; 200182094794SBarry Smith } 20029566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 2004fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 20059566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20069566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20079566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200882094794SBarry Smith } else { 200982094794SBarry Smith PetscInt ml, nl; 201082094794SBarry Smith 201182094794SBarry Smith M = *newmat; 20129566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20135f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20149566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 201582094794SBarry Smith /* 201682094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201782094794SBarry Smith rather than the slower MatSetValues(). 201882094794SBarry Smith */ 201982094794SBarry Smith M->was_assembled = PETSC_TRUE; 202082094794SBarry Smith M->assembled = PETSC_FALSE; 202182094794SBarry Smith } 20229566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20239566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202482094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 202582094794SBarry Smith ii = aij->i; 202682094794SBarry Smith jj = aij->j; 202782094794SBarry Smith aa = aij->a; 202882094794SBarry Smith for (i = 0; i < m; i++) { 202982094794SBarry Smith row = rstart / bs + i; 203082094794SBarry Smith nz = ii[i + 1] - ii[i]; 20319371c9d4SSatish Balay cwork = jj; 20328e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20339371c9d4SSatish Balay vwork = aa; 20348e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203682094794SBarry Smith } 203782094794SBarry Smith 20389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 204082094794SBarry Smith *newmat = M; 204182094794SBarry Smith 204282094794SBarry Smith /* save submatrix used in processor for next request */ 204382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20459566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204682094794SBarry Smith } 20473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204882094794SBarry Smith } 204982094794SBarry Smith 205066976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2051d71ae5a4SJacob Faibussowitsch { 205282094794SBarry Smith MPI_Comm comm, pcomm; 2053a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205482094794SBarry Smith const PetscInt *rows; 2055dbf0e21dSBarry Smith PetscMPIInt size; 2056a0a83eb5SRémi Lacroix IS crowp, lcolp; 205782094794SBarry Smith 205882094794SBarry Smith PetscFunctionBegin; 20599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 206082094794SBarry Smith /* make a collective version of 'rowp' */ 20619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 206282094794SBarry Smith if (pcomm == comm) { 206382094794SBarry Smith crowp = rowp; 206482094794SBarry Smith } else { 20659566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20679566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20689566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206982094794SBarry Smith } 20709566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2071a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2074dbf0e21dSBarry Smith if (size == 1) { 207582094794SBarry Smith lcolp = colp; 207682094794SBarry Smith } else { 20779566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207882094794SBarry Smith } 20799566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 208075f6568bSJed Brown /* now we just get the submatrix */ 20819566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2082fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2083a0a83eb5SRémi Lacroix /* clean up */ 208448a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 208548a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208782094794SBarry Smith } 208882094794SBarry Smith 208966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2090d71ae5a4SJacob Faibussowitsch { 20918c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20928c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20938c7482ecSBarry Smith 20948c7482ecSBarry Smith PetscFunctionBegin; 209526fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209626fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20988c7482ecSBarry Smith } 20998c7482ecSBarry Smith 210066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2101d71ae5a4SJacob Faibussowitsch { 2102f6d58c54SBarry Smith Mat B; 2103f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2104f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2105f6d58c54SBarry Smith Mat_SeqAIJ *b; 2106f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2107f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2108f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2109f6d58c54SBarry Smith 2110f6d58c54SBarry Smith PetscFunctionBegin; 21119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2113f6d58c54SBarry Smith 21142ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2116ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2118f6d58c54SBarry Smith displs = recvcounts + size; 2119f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2120f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2121f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2122f6d58c54SBarry Smith } 21239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21242ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21259566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21279566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2129f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2130f6d58c54SBarry Smith 21312ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2132f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2133f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2134f6d58c54SBarry Smith a_jsendbuf = ad->j; 2135f6d58c54SBarry Smith b_jsendbuf = bd->j; 2136f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2137f6d58c54SBarry Smith cnt = 0; 2138f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2139f6d58c54SBarry Smith /* put in lower diagonal portion */ 2140f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2141f6d58c54SBarry Smith while (m > 0) { 2142f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2143f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2144f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2145f6d58c54SBarry Smith m--; 2146f6d58c54SBarry Smith } 2147f6d58c54SBarry Smith 2148f6d58c54SBarry Smith /* put in diagonal portion */ 2149ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2150f6d58c54SBarry Smith 2151f6d58c54SBarry Smith /* put in upper diagonal portion */ 2152ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2153f6d58c54SBarry Smith } 21545f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2155f6d58c54SBarry Smith 21562ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2157f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2158f6d58c54SBarry Smith recvcounts[i] = 0; 2159ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2160f6d58c54SBarry Smith } 2161f6d58c54SBarry Smith displs[0] = 0; 2162ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21645804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2165f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21669566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2167f6d58c54SBarry Smith /* set the b->i indices */ 2168f6d58c54SBarry Smith b->i[0] = 0; 2169ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21709566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21719566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21729566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21739566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2174f6d58c54SBarry Smith 2175b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2176f6d58c54SBarry Smith *newmat = B; 21773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2178f6d58c54SBarry Smith } 2179f6d58c54SBarry Smith 218066976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2181d71ae5a4SJacob Faibussowitsch { 2182b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2183f4259b30SLisandro Dalcin Vec bb1 = NULL; 2184b1a666ecSBarry Smith 2185b1a666ecSBarry Smith PetscFunctionBegin; 2186b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21879566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2189b1a666ecSBarry Smith } 2190b1a666ecSBarry Smith 219148a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21924e980039SJed Brown 2193b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2194b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21959566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2196b1a666ecSBarry Smith its--; 2197b1a666ecSBarry Smith } 2198b1a666ecSBarry Smith 2199b1a666ecSBarry Smith while (its--) { 22009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2202b1a666ecSBarry Smith 2203b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22049566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22059566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2206b1a666ecSBarry Smith 2207b1a666ecSBarry Smith /* local sweep */ 22089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2209b1a666ecSBarry Smith } 2210b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2211b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2213b1a666ecSBarry Smith its--; 2214b1a666ecSBarry Smith } 2215b1a666ecSBarry Smith while (its--) { 22169566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22179566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2218b1a666ecSBarry Smith 2219b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22209566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22219566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2222b1a666ecSBarry Smith 2223b1a666ecSBarry Smith /* local sweep */ 22249566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2225b1a666ecSBarry Smith } 2226b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2227b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2229b1a666ecSBarry Smith its--; 2230b1a666ecSBarry Smith } 2231b1a666ecSBarry Smith while (its--) { 22329566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22339566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2234b1a666ecSBarry Smith 2235b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22369566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22379566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2238b1a666ecSBarry Smith 2239b1a666ecSBarry Smith /* local sweep */ 22409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2241b1a666ecSBarry Smith } 2242ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2243b1a666ecSBarry Smith 22449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2246b1a666ecSBarry Smith } 2247b1a666ecSBarry Smith 224866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2249d71ae5a4SJacob Faibussowitsch { 225047f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2251a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 225247f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 225347f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 225447f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 225547f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 225647f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 225747f7623dSRémi Lacroix PetscReal *work; 225847f7623dSRémi Lacroix 225947f7623dSRémi Lacroix PetscFunctionBegin; 22609566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22619566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2262857cbf51SRichard Tran Mills if (type == NORM_2) { 226347f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 226447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226647f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 226747f7623dSRémi Lacroix a_val++; 226847f7623dSRémi Lacroix } 226947f7623dSRémi Lacroix } 227047f7623dSRémi Lacroix } 227147f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 227247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227447f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 227547f7623dSRémi Lacroix b_val++; 227647f7623dSRémi Lacroix } 227747f7623dSRémi Lacroix } 227847f7623dSRémi Lacroix } 2279857cbf51SRichard Tran Mills } else if (type == NORM_1) { 228047f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 228447f7623dSRémi Lacroix a_val++; 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix } 228747f7623dSRémi Lacroix } 228847f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 229247f7623dSRémi Lacroix b_val++; 229347f7623dSRémi Lacroix } 229447f7623dSRémi Lacroix } 229547f7623dSRémi Lacroix } 2296857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 229747f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230047f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 230147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 230247f7623dSRémi Lacroix a_val++; 230347f7623dSRémi Lacroix } 230447f7623dSRémi Lacroix } 230547f7623dSRémi Lacroix } 230647f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230947f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 231047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 231147f7623dSRémi Lacroix b_val++; 231247f7623dSRémi Lacroix } 231347f7623dSRémi Lacroix } 231447f7623dSRémi Lacroix } 2315857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2316a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2317a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2318a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2319857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2320a873a8cdSSam Reynolds a_val++; 2321a873a8cdSSam Reynolds } 2322a873a8cdSSam Reynolds } 2323a873a8cdSSam Reynolds } 2324a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2325a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2326a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2327857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2328a873a8cdSSam Reynolds b_val++; 2329a873a8cdSSam Reynolds } 2330a873a8cdSSam Reynolds } 2331a873a8cdSSam Reynolds } 2332857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2333857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2334857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2335857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2336857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2337857cbf51SRichard Tran Mills a_val++; 2338857cbf51SRichard Tran Mills } 2339857cbf51SRichard Tran Mills } 2340857cbf51SRichard Tran Mills } 2341857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2342857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2343857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2344857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2345857cbf51SRichard Tran Mills b_val++; 2346857cbf51SRichard Tran Mills } 2347857cbf51SRichard Tran Mills } 2348857cbf51SRichard Tran Mills } 2349857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2350857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 235247f7623dSRémi Lacroix } else { 23531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 235447f7623dSRémi Lacroix } 23559566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2356857cbf51SRichard Tran Mills if (type == NORM_2) { 2357a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2358857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2359a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 236047f7623dSRémi Lacroix } 23613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 236247f7623dSRémi Lacroix } 236347f7623dSRémi Lacroix 236466976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2365d71ae5a4SJacob Faibussowitsch { 2366bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2367bbead8a2SBarry Smith 2368bbead8a2SBarry Smith PetscFunctionBegin; 23699566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23707b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23717b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23727b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2374bbead8a2SBarry Smith } 2375bbead8a2SBarry Smith 237666976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2377d71ae5a4SJacob Faibussowitsch { 23787d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23796f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23807d68702bSBarry Smith 23817d68702bSBarry Smith PetscFunctionBegin; 23826f33a894SBarry Smith if (!Y->preallocated) { 23839566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23846f33a894SBarry Smith } else if (!aij->nz) { 2385b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23869566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2387b83222d8SBarry Smith aij->nonew = nonew; 23887d68702bSBarry Smith } 23899566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23917d68702bSBarry Smith } 23928c7482ecSBarry Smith 239366976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2394d71ae5a4SJacob Faibussowitsch { 23953b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23963b49f96aSBarry Smith 23973b49f96aSBarry Smith PetscFunctionBegin; 23985f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23999566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 24003b49f96aSBarry Smith if (d) { 24013b49f96aSBarry Smith PetscInt rstart; 24029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24033b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24043b49f96aSBarry Smith } 24053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24063b49f96aSBarry Smith } 24073b49f96aSBarry Smith 240866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2409d71ae5a4SJacob Faibussowitsch { 2410a5b7ff6bSBarry Smith PetscFunctionBegin; 2411a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2413a5b7ff6bSBarry Smith } 2414a5b7ff6bSBarry Smith 241517ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 241617ea310bSPierre Jolivet { 241717ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 241817ea310bSPierre Jolivet 241917ea310bSPierre Jolivet PetscFunctionBegin; 242017ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 242117ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 242217ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 242317ea310bSPierre Jolivet } 242417ea310bSPierre Jolivet 24253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2426cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2427cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2428cc2dc46cSBarry Smith MatMult_MPIBAIJ, 242997304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24307c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24317c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2432f4259b30SLisandro Dalcin NULL, 2433f4259b30SLisandro Dalcin NULL, 2434f4259b30SLisandro Dalcin NULL, 2435f4259b30SLisandro Dalcin /*10*/ NULL, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin NULL, 2438b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2439cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244097304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24417fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2442cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2443cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2444cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2446cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2447cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2448cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2449d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2450f4259b30SLisandro Dalcin NULL, 2451f4259b30SLisandro Dalcin NULL, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 245426cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 2457a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2458f4259b30SLisandro Dalcin NULL, 2459d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2460f4259b30SLisandro Dalcin NULL, 2461f4259b30SLisandro Dalcin NULL, 2462f4259b30SLisandro Dalcin NULL, 2463f4259b30SLisandro Dalcin NULL, 2464d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24657dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2466cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2467cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24683c896bc6SHong Zhang MatCopy_MPIBAIJ, 2469f4259b30SLisandro Dalcin /*44*/ NULL, 2470cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24717d68702bSBarry Smith MatShift_MPIBAIJ, 2472f4259b30SLisandro Dalcin NULL, 24736f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2474f4259b30SLisandro Dalcin /*49*/ NULL, 2475f4259b30SLisandro Dalcin NULL, 2476f4259b30SLisandro Dalcin NULL, 2477f4259b30SLisandro Dalcin NULL, 2478f4259b30SLisandro Dalcin NULL, 247993dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2480f4259b30SLisandro Dalcin NULL, 2481cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 248282094794SBarry Smith MatPermute_MPIBAIJ, 2483cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24847dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2485f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2486f14a1c24SBarry Smith MatView_MPIBAIJ, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin NULL, 2489f4259b30SLisandro Dalcin /*64*/ NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin /*74*/ NULL, 2500f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin /*79*/ NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 25085bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2509f4259b30SLisandro Dalcin /*84*/ NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin /*89*/ NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin /*94*/ NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin /*99*/ NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 25272726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin /*104*/ NULL, 253099cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25318c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin NULL, 2534f4259b30SLisandro Dalcin /*109*/ NULL, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin NULL, 25383b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2539d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2540f4259b30SLisandro Dalcin NULL, 25414683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin NULL, 2544f4259b30SLisandro Dalcin /*119*/ NULL, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin NULL, 2547f4259b30SLisandro Dalcin NULL, 2548e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2549f4259b30SLisandro Dalcin /*124*/ NULL, 2550a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25513964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin /*129*/ NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin NULL, 2557f4259b30SLisandro Dalcin NULL, 2558f4259b30SLisandro Dalcin NULL, 2559f4259b30SLisandro Dalcin /*134*/ NULL, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin NULL, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin NULL, 256446533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2565f4259b30SLisandro Dalcin NULL, 2566f4259b30SLisandro Dalcin NULL, 2567bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2568f4259b30SLisandro Dalcin NULL, 2569d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2570d70f29a3SPierre Jolivet NULL, 2571d70f29a3SPierre Jolivet NULL, 257299a7f59eSMark Adams NULL, 257399a7f59eSMark Adams NULL, 25747fb60732SBarry Smith NULL, 2575dec0b466SHong Zhang /*150*/ NULL, 2576eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 2577eede4a3fSMark Adams NULL}; 257879bdfe76SSatish Balay 2579cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2580c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2581d94109b8SHong Zhang 258266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2583d71ae5a4SJacob Faibussowitsch { 2584b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2585f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2586f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2587f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2588d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25893bd0feecSPierre Jolivet PetscBool nooffprocentries; 2590aac34f13SBarry Smith 2591aac34f13SBarry Smith PetscFunctionBegin; 25929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25969566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2597d0f46423SBarry Smith m = B->rmap->n / bs; 2598d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2599d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2600d0f46423SBarry Smith cend = B->cmap->rend / bs; 2601b8d659d7SLisandro Dalcin 26025f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2604aac34f13SBarry Smith for (i = 0; i < m; i++) { 2605cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26065f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2607b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 260837cd3c0dSBarry Smith dlen = 0; 260937cd3c0dSBarry Smith olen = 0; 2610cf12db73SBarry Smith JJ = jj + ii[i]; 2611b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 261237cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261337cd3c0dSBarry Smith else dlen++; 2614aac34f13SBarry Smith JJ++; 2615aac34f13SBarry Smith } 261637cd3c0dSBarry Smith d_nnz[i] = dlen; 261737cd3c0dSBarry Smith o_nnz[i] = olen; 2618aac34f13SBarry Smith } 26199566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26209566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2621aac34f13SBarry Smith 2622b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 262348a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2624b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2625b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2626cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2627cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2628bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2629cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26309566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26313adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26323adadaf3SJed Brown PetscInt j; 26333adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26343adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26363adadaf3SJed Brown } 26373adadaf3SJed Brown } 2638aac34f13SBarry Smith } 2639aac34f13SBarry Smith 26409566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26413bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26423bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26453bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26463bd0feecSPierre Jolivet 26479566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2649aac34f13SBarry Smith } 2650aac34f13SBarry Smith 2651aac34f13SBarry Smith /*@C 265211a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2653aac34f13SBarry Smith 2654d083f849SBarry Smith Collective 2655aac34f13SBarry Smith 2656aac34f13SBarry Smith Input Parameters: 26571c4f3114SJed Brown + B - the matrix 2658dfb205c3SBarry Smith . bs - the block size 265920f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2660aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2661*d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2662aac34f13SBarry Smith 2663664954b6SBarry Smith Level: advanced 2664aac34f13SBarry Smith 266595452b02SPatrick Sanan Notes: 2666*d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2667*d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2668*d8a51d2aSBarry Smith called this routine. 2669*d8a51d2aSBarry Smith 267011a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 267111a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26723adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 267311a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26743adadaf3SJed Brown block column and the second index is over columns within a block. 26753adadaf3SJed Brown 2676664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2677664954b6SBarry Smith 26787d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2679aac34f13SBarry Smith @*/ 2680d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2681d71ae5a4SJacob Faibussowitsch { 2682aac34f13SBarry Smith PetscFunctionBegin; 26836ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26846ba663aaSJed Brown PetscValidType(B, 1); 26856ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2686cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2688aac34f13SBarry Smith } 2689aac34f13SBarry Smith 2690d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2691d71ae5a4SJacob Faibussowitsch { 2692ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2693535b19f3SBarry Smith PetscInt i; 26945d2a9ed1SStefano Zampini PetscMPIInt size; 2695a23d5eceSKris Buschelman 2696a23d5eceSKris Buschelman PetscFunctionBegin; 2697ad79cf63SBarry Smith if (B->hash_active) { 2698aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2699ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2700ad79cf63SBarry Smith } 2701ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 27029566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 27039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27059566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2706899cda47SBarry Smith 2707a23d5eceSKris Buschelman if (d_nnz) { 2708ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2709a23d5eceSKris Buschelman } 2710a23d5eceSKris Buschelman if (o_nnz) { 2711ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2712a23d5eceSKris Buschelman } 2713a23d5eceSKris Buschelman 2714a23d5eceSKris Buschelman b->bs2 = bs * bs; 2715d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2716d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2717d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2718d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2719a23d5eceSKris Buschelman 2720ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2721d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2722d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2723d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2724d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2725a23d5eceSKris Buschelman 2726cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2727eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2728cb7b82ddSBarry Smith #else 27299566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2730cb7b82ddSBarry Smith #endif 27319566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27339566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2734cb7b82ddSBarry Smith 27359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2736c508b908SBarry Smith 2737c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27389566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27399566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27419566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2742c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2743cb7b82ddSBarry Smith 2744c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2745ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27469566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27489566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2749c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2750a23d5eceSKris Buschelman 27519566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27529566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2753526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2754cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2755cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2757a23d5eceSKris Buschelman } 2758a23d5eceSKris Buschelman 27597087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27607087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27615bf65638SKris Buschelman 2762d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2763d71ae5a4SJacob Faibussowitsch { 276482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 276582094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 276682094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 276782094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 276882094794SBarry Smith 276982094794SBarry Smith PetscFunctionBegin; 27709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 277182094794SBarry Smith ii[0] = 0; 277282094794SBarry Smith for (i = 0; i < M; i++) { 277308401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 277408401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 277582094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27765ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27775ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27789371c9d4SSatish Balay if (jd[j] == i) { 27799371c9d4SSatish Balay ii[i + 1]--; 27809371c9d4SSatish Balay break; 27819371c9d4SSatish Balay } 27825ee9ba1cSJed Brown } 278382094794SBarry Smith } 27849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 278582094794SBarry Smith cnt = 0; 278682094794SBarry Smith for (i = 0; i < M; i++) { 278782094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 278882094794SBarry Smith if (garray[jo[j]] > rstart) break; 278982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279082094794SBarry Smith } 279182094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2792ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 279382094794SBarry Smith } 2794ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 279582094794SBarry Smith } 27969566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279882094794SBarry Smith } 279982094794SBarry Smith 2800c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 280162471d69SBarry Smith 2802cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2803b2573a8aSBarry Smith 2804d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2805d71ae5a4SJacob Faibussowitsch { 280662471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 280785a69837SSatish Balay Mat_MPIAIJ *b; 28085f80ce2aSJacob Faibussowitsch Mat B; 280962471d69SBarry Smith 281062471d69SBarry Smith PetscFunctionBegin; 28115f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 281262471d69SBarry Smith 28130f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28140f6d62edSLisandro Dalcin B = *newmat; 28150f6d62edSLisandro Dalcin } else { 28169566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28179566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28199566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28220f6d62edSLisandro Dalcin } 282362471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 282462471d69SBarry Smith 28250f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28269566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28279566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28280f6d62edSLisandro Dalcin } else { 28297c612885SStefano Zampini PetscInt *garray = a->garray; 28307c612885SStefano Zampini Mat_SeqAIJ *bB; 28317c612885SStefano Zampini PetscInt bs, nnz; 28329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28347c612885SStefano Zampini /* just clear out the data structure */ 28357c612885SStefano Zampini PetscCall(MatDisAssemble_MPIAIJ(B)); 28369566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28379566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28387c612885SStefano Zampini 28397c612885SStefano Zampini /* Global numbering for b->B columns */ 28407c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28417c612885SStefano Zampini bs = A->rmap->bs; 28427c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28437c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28447c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28457c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28467c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28477c612885SStefano Zampini } 28480f6d62edSLisandro Dalcin } 28499566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28510f6d62edSLisandro Dalcin 2852511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28539566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 285462471d69SBarry Smith } else { 285562471d69SBarry Smith *newmat = B; 285662471d69SBarry Smith } 28573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285862471d69SBarry Smith } 285962471d69SBarry Smith 28600bad9183SKris Buschelman /*MC 2861fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28620bad9183SKris Buschelman 28630bad9183SKris Buschelman Options Database Keys: 286411a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28658c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28666679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 286767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28680bad9183SKris Buschelman 28690bad9183SKris Buschelman Level: beginner 28700cd7f59aSBarry Smith 287111a5261eSBarry Smith Note: 28725e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 287311a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28740bad9183SKris Buschelman 28755e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28760bad9183SKris Buschelman M*/ 28770bad9183SKris Buschelman 2878cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2879c0cdd4a1SDahai Guo 2880d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2881d71ae5a4SJacob Faibussowitsch { 2882273d9f13SBarry Smith Mat_MPIBAIJ *b; 288394ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2884273d9f13SBarry Smith 2885273d9f13SBarry Smith PetscFunctionBegin; 28864dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 288782502324SSatish Balay B->data = (void *)b; 2888aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2889273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2894273d9f13SBarry Smith 2895273d9f13SBarry Smith /* build local table of row and column ownerships */ 28969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2897273d9f13SBarry Smith 2898273d9f13SBarry Smith /* build cache for off array entries formed */ 28999566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 290026fbe8dcSKarl Rupp 2901273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 29020298fd71SBarry Smith b->colmap = NULL; 29030298fd71SBarry Smith b->garray = NULL; 2904273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2905273d9f13SBarry Smith 2906273d9f13SBarry Smith /* stuff used in block assembly */ 2907f4259b30SLisandro Dalcin b->barray = NULL; 2908273d9f13SBarry Smith 2909273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2910f4259b30SLisandro Dalcin b->lvec = NULL; 2911f4259b30SLisandro Dalcin b->Mvctx = NULL; 2912273d9f13SBarry Smith 2913273d9f13SBarry Smith /* stuff for MatGetRow() */ 2914f4259b30SLisandro Dalcin b->rowindices = NULL; 2915f4259b30SLisandro Dalcin b->rowvalues = NULL; 2916273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2917273d9f13SBarry Smith 2918273d9f13SBarry Smith /* hash table stuff */ 2919f4259b30SLisandro Dalcin b->ht = NULL; 2920f4259b30SLisandro Dalcin b->hd = NULL; 2921273d9f13SBarry Smith b->ht_size = 0; 2922273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2923273d9f13SBarry Smith b->ht_fact = 0; 2924273d9f13SBarry Smith b->ht_total_ct = 0; 2925273d9f13SBarry Smith b->ht_insert_ct = 0; 2926273d9f13SBarry Smith 29277dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29287a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29297a868f3eSHong Zhang 29309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29337ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29357ea3e4caSstefano_zampini #endif 29369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29439566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 294494ae4db5SBarry Smith 2945d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29469566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 294794ae4db5SBarry Smith if (flg) { 294894ae4db5SBarry Smith PetscReal fact = 1.39; 29499566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29509566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 295194ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29529566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29539566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 295494ae4db5SBarry Smith } 2955d0609cedSBarry Smith PetscOptionsEnd(); 29563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2957273d9f13SBarry Smith } 2958273d9f13SBarry Smith 29592920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2960209238afSKris Buschelman /*MC 2961002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2962209238afSKris Buschelman 296311a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 296411a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2965209238afSKris Buschelman 2966209238afSKris Buschelman Options Database Keys: 296711a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2968209238afSKris Buschelman 2969209238afSKris Buschelman Level: beginner 2970209238afSKris Buschelman 297167be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2972209238afSKris Buschelman M*/ 2973209238afSKris Buschelman 2974273d9f13SBarry Smith /*@C 297511a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 297667be906fSBarry Smith (block compressed row). 2977273d9f13SBarry Smith 2978c3339decSBarry Smith Collective 2979273d9f13SBarry Smith 2980273d9f13SBarry Smith Input Parameters: 29811c4f3114SJed Brown + B - the matrix 298211a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 298367be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2984273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2985273d9f13SBarry Smith submatrix (same for all local rows) 2986273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2987273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 298867be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 298995742e49SBarry Smith set it even if it is zero. 2990273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2991273d9f13SBarry Smith submatrix (same for all local rows). 2992273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2993273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 299467be906fSBarry Smith each block row) or `NULL`. 2995273d9f13SBarry Smith 299649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2997273d9f13SBarry Smith 2998273d9f13SBarry Smith Options Database Keys: 29998c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 300067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 3001273d9f13SBarry Smith 300267be906fSBarry Smith Level: intermediate 300367be906fSBarry Smith 3004273d9f13SBarry Smith Notes: 300567be906fSBarry Smith For good matrix assembly performance 300667be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 300767be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 300867be906fSBarry Smith performance can be increased by more than a factor of 50. 300967be906fSBarry Smith 301011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3011273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3012273d9f13SBarry Smith 3013273d9f13SBarry Smith Storage Information: 3014273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3015273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3016273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3017273d9f13SBarry Smith local matrix (a rectangular submatrix). 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 302067be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 302167be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3022273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 302367be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3024273d9f13SBarry Smith 3025273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3026273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3027273d9f13SBarry Smith 3028273d9f13SBarry Smith .vb 3029273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3030a4b1a0f6SJed Brown -------------------------- 3031273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3032273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3033273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3034a4b1a0f6SJed Brown -------------------------- 3035273d9f13SBarry Smith .ve 3036273d9f13SBarry Smith 3037273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3038273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3039273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 304011a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3041273d9f13SBarry Smith 304267be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 304367be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3044273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 304520f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3046273d9f13SBarry Smith 304711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3048aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 304967be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3050aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3051aa95bbe8SBarry Smith 305267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3053273d9f13SBarry Smith @*/ 3054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3055d71ae5a4SJacob Faibussowitsch { 3056273d9f13SBarry Smith PetscFunctionBegin; 30576ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30586ba663aaSJed Brown PetscValidType(B, 1); 30596ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3060cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3062273d9f13SBarry Smith } 3063273d9f13SBarry Smith 30642920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 306579bdfe76SSatish Balay /*@C 306611a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 306767be906fSBarry Smith (block compressed row). 306879bdfe76SSatish Balay 3069d083f849SBarry Smith Collective 3070db81eaa0SLois Curfman McInnes 307179bdfe76SSatish Balay Input Parameters: 3072db81eaa0SLois Curfman McInnes + comm - MPI communicator 307311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 307411a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 307511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 307692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 307811a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 307992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 308111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 308211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 308347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 308479bdfe76SSatish Balay submatrix (same for all local rows) 308547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 308692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30870298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 308895742e49SBarry Smith and set it even if it is zero. 308947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 309079bdfe76SSatish Balay submatrix (same for all local rows). 309147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 309292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30930298fd71SBarry Smith each block row) or NULL. 309479bdfe76SSatish Balay 309579bdfe76SSatish Balay Output Parameter: 309679bdfe76SSatish Balay . A - the matrix 309779bdfe76SSatish Balay 3098db81eaa0SLois Curfman McInnes Options Database Keys: 30998c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 310067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 31013ffaccefSLois Curfman McInnes 310267be906fSBarry Smith Level: intermediate 310367be906fSBarry Smith 310467be906fSBarry Smith Notes: 310577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 310677433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 310777433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 310877433607SBarry Smith 310967be906fSBarry Smith For good matrix assembly performance 311067be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 311167be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 311267be906fSBarry Smith performance can be increased by more than a factor of 50. 311367be906fSBarry Smith 311449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 311549a6f317SBarry Smith 311647a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 311747a75d0bSBarry Smith 311879bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 311979bdfe76SSatish Balay (possibly both). 312079bdfe76SSatish Balay 312111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3122be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3123be79a94dSBarry Smith 312479bdfe76SSatish Balay Storage Information: 312579bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 312679bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 312779bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 312879bdfe76SSatish Balay local matrix (a rectangular submatrix). 312979bdfe76SSatish Balay 313079bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 313179bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 313267be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 313379bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 313467be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 313579bdfe76SSatish Balay 313679bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 313779bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 313879bdfe76SSatish Balay 3139db81eaa0SLois Curfman McInnes .vb 3140db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3141a4b1a0f6SJed Brown -------------------------- 3142db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3143db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3144db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3145a4b1a0f6SJed Brown -------------------------- 3146db81eaa0SLois Curfman McInnes .ve 314779bdfe76SSatish Balay 314879bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 314979bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315079bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 315111a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 315279bdfe76SSatish Balay 315367be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 315467be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 315579bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 315620f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 315779bdfe76SSatish Balay 315842747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 315979bdfe76SSatish Balay @*/ 3160d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3161d71ae5a4SJacob Faibussowitsch { 3162b24ad042SBarry Smith PetscMPIInt size; 316379bdfe76SSatish Balay 3164d64ed03dSBarry Smith PetscFunctionBegin; 31659566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3168273d9f13SBarry Smith if (size > 1) { 31699566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31709566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3171273d9f13SBarry Smith } else { 31729566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31739566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31743914022bSBarry Smith } 31753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 317679bdfe76SSatish Balay } 3177026e39d0SSatish Balay 3178d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3179d71ae5a4SJacob Faibussowitsch { 31800ac07820SSatish Balay Mat mat; 31810ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3182b24ad042SBarry Smith PetscInt len = 0; 31830ac07820SSatish Balay 3184d64ed03dSBarry Smith PetscFunctionBegin; 3185f4259b30SLisandro Dalcin *newmat = NULL; 31869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31889566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31897fff6886SHong Zhang 3190420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3191420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3192420957c1SBarry Smith if (matin->hash_active) { 3193420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3194420957c1SBarry Smith } else { 3195d5f3da31SBarry Smith mat->factortype = matin->factortype; 3196273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31970ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31987fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31997fff6886SHong Zhang 3200273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3201d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32020ac07820SSatish Balay a->bs2 = oldmat->bs2; 32030ac07820SSatish Balay a->mbs = oldmat->mbs; 32040ac07820SSatish Balay a->nbs = oldmat->nbs; 32050ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32060ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32070ac07820SSatish Balay 32080ac07820SSatish Balay a->size = oldmat->size; 32090ac07820SSatish Balay a->rank = oldmat->rank; 3210aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3211aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3212f4259b30SLisandro Dalcin a->rowindices = NULL; 3213f4259b30SLisandro Dalcin a->rowvalues = NULL; 32140ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3215f4259b30SLisandro Dalcin a->barray = NULL; 3216899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3217899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3218899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3219899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32200ac07820SSatish Balay 3221133cdb44SSatish Balay /* hash table stuff */ 3222f4259b30SLisandro Dalcin a->ht = NULL; 3223f4259b30SLisandro Dalcin a->hd = NULL; 3224133cdb44SSatish Balay a->ht_size = 0; 3225133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 322625fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3227133cdb44SSatish Balay a->ht_total_ct = 0; 3228133cdb44SSatish Balay a->ht_insert_ct = 0; 3229133cdb44SSatish Balay 32309566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32310ac07820SSatish Balay if (oldmat->colmap) { 3232aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3233eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 323448e59246SSatish Balay #else 32359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 323748e59246SSatish Balay #endif 3238f4259b30SLisandro Dalcin } else a->colmap = NULL; 32394beb1cfeSHong Zhang 32400ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 32419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3243f4259b30SLisandro Dalcin } else a->garray = NULL; 32440ac07820SSatish Balay 32459566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32469566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32479566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32487fff6886SHong Zhang 32499566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32509566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3251420957c1SBarry Smith } 32529566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32530ac07820SSatish Balay *newmat = mat; 32543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32550ac07820SSatish Balay } 325657b952d6SSatish Balay 3257618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3258d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3259d71ae5a4SJacob Faibussowitsch { 3260b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3261b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3262b51a4376SLisandro Dalcin PetscScalar *matvals; 3263b51a4376SLisandro Dalcin 3264b51a4376SLisandro Dalcin PetscFunctionBegin; 32659566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3266b51a4376SLisandro Dalcin 3267b51a4376SLisandro Dalcin /* read in matrix header */ 32689566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32695f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32709371c9d4SSatish Balay M = header[1]; 32719371c9d4SSatish Balay N = header[2]; 32729371c9d4SSatish Balay nz = header[3]; 32735f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32745f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32755f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3276b51a4376SLisandro Dalcin 3277b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32789566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3279618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3280618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3281618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3282b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3283b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3284b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3287b51a4376SLisandro Dalcin 3288b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32899566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32905f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32929566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32939566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32949566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32959371c9d4SSatish Balay mbs = m / bs; 32969371c9d4SSatish Balay nbs = n / bs; 3297b51a4376SLisandro Dalcin 3298b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 33009566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 33019371c9d4SSatish Balay rowidxs[0] = 0; 33029371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 33031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 33045f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3305b51a4376SLisandro Dalcin 3306b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 33079566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 33089566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 33099566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3310b51a4376SLisandro Dalcin 3311b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3312b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3313b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3314618cc2edSLisandro Dalcin PetscBool sbaij, done; 3315b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3316b51a4376SLisandro Dalcin 33179566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33189566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33199566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3321b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33229566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33239566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3324618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3325618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3326618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3327618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3328618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3329618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3330618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3331b51a4376SLisandro Dalcin } else { 33329566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3333b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3334b51a4376SLisandro Dalcin } 3335b51a4376SLisandro Dalcin } 3336618cc2edSLisandro Dalcin } 3337618cc2edSLisandro Dalcin } 3338618cc2edSLisandro Dalcin } 33399566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33409566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33419566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33429566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33439566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3344b51a4376SLisandro Dalcin } 3345b51a4376SLisandro Dalcin 3346b51a4376SLisandro Dalcin /* store matrix values */ 3347b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3348b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33499927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3350b51a4376SLisandro Dalcin } 3351b51a4376SLisandro Dalcin 33529566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33539566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3357b51a4376SLisandro Dalcin } 3358b51a4376SLisandro Dalcin 3359d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3360d71ae5a4SJacob Faibussowitsch { 33617f489da9SVaclav Hapla PetscBool isbinary; 33624683f7a4SShri Abhyankar 33634683f7a4SShri Abhyankar PetscFunctionBegin; 33649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33655f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33669566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33684683f7a4SShri Abhyankar } 33694683f7a4SShri Abhyankar 3370133cdb44SSatish Balay /*@ 337111a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3372133cdb44SSatish Balay 3373133cdb44SSatish Balay Input Parameters: 3374a2b725a8SWilliam Gropp + mat - the matrix 3375a2b725a8SWilliam Gropp - fact - factor 3376133cdb44SSatish Balay 337711a5261eSBarry Smith Options Database Key: 337811a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3379fee21e36SBarry Smith 33808c890885SBarry Smith Level: advanced 33818c890885SBarry Smith 338267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3383133cdb44SSatish Balay @*/ 3384d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3385d71ae5a4SJacob Faibussowitsch { 33865bf65638SKris Buschelman PetscFunctionBegin; 3387cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33895bf65638SKris Buschelman } 33905bf65638SKris Buschelman 3391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3392d71ae5a4SJacob Faibussowitsch { 339325fdafccSSatish Balay Mat_MPIBAIJ *baij; 3394133cdb44SSatish Balay 3395133cdb44SSatish Balay PetscFunctionBegin; 3396133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3397133cdb44SSatish Balay baij->ht_fact = fact; 33983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3399133cdb44SSatish Balay } 3400f2a5309cSSatish Balay 3401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3402d71ae5a4SJacob Faibussowitsch { 3403f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3404ab4d48faSStefano Zampini PetscBool flg; 34055fd66863SKarl Rupp 3406f2a5309cSSatish Balay PetscFunctionBegin; 34079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 34085f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 340921e72a00SBarry Smith if (Ad) *Ad = a->A; 341021e72a00SBarry Smith if (Ao) *Ao = a->B; 341121e72a00SBarry Smith if (colmap) *colmap = a->garray; 34123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3413f2a5309cSSatish Balay } 341485535b8eSBarry Smith 341585535b8eSBarry Smith /* 341685535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 341785535b8eSBarry Smith */ 341885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 341985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 342085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 342185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 342285535b8eSBarry Smith #endif 342385535b8eSBarry Smith 34242920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 342585535b8eSBarry Smith /*@C 342611a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 342785535b8eSBarry Smith 3428c3339decSBarry Smith Collective 342985535b8eSBarry Smith 343085535b8eSBarry Smith Input Parameters: 3431fe59aa6dSJacob Faibussowitsch + matin - the matrix 343285535b8eSBarry Smith . min - number of input rows 343385535b8eSBarry Smith . im - input rows 343485535b8eSBarry Smith . nin - number of input columns 343585535b8eSBarry Smith . in - input columns 343685535b8eSBarry Smith . v - numerical values input 343711a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 343885535b8eSBarry Smith 343920f4b53cSBarry Smith Level: advanced 344020f4b53cSBarry Smith 3441fe59aa6dSJacob Faibussowitsch Developer Notes: 344211a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 344385535b8eSBarry Smith 344467be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 344585535b8eSBarry Smith @*/ 344666976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3447d71ae5a4SJacob Faibussowitsch { 344885535b8eSBarry Smith /* convert input arguments to C version */ 344985535b8eSBarry Smith Mat mat = *matin; 345085535b8eSBarry Smith PetscInt m = *min, n = *nin; 345185535b8eSBarry Smith InsertMode addv = *addvin; 345285535b8eSBarry Smith 345385535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 345485535b8eSBarry Smith const MatScalar *value; 345585535b8eSBarry Smith MatScalar *barray = baij->barray; 3456ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 345785535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 345885535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3459d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 346085535b8eSBarry Smith 346185535b8eSBarry Smith PetscFunctionBegin; 346285535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 346326fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34645f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34655f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 346685535b8eSBarry Smith if (mat->assembled) { 346785535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 346885535b8eSBarry Smith mat->assembled = PETSC_FALSE; 346985535b8eSBarry Smith } 34709566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 347185535b8eSBarry Smith 347285535b8eSBarry Smith if (!barray) { 34739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 347485535b8eSBarry Smith baij->barray = barray; 347585535b8eSBarry Smith } 347685535b8eSBarry Smith 347726fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 347826fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 347926fbe8dcSKarl Rupp 348085535b8eSBarry Smith for (i = 0; i < m; i++) { 348185535b8eSBarry Smith if (im[i] < 0) continue; 34826bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 348385535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 348485535b8eSBarry Smith row = im[i] - rstart; 348585535b8eSBarry Smith for (j = 0; j < n; j++) { 348685535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 348785535b8eSBarry Smith if ((roworiented) && (n == 1)) { 348885535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 348985535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 349085535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 349185535b8eSBarry Smith } else { /* Here a copy is required */ 349285535b8eSBarry Smith if (roworiented) { 349385535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 349485535b8eSBarry Smith } else { 349585535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 349685535b8eSBarry Smith } 349785535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3498ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 349985535b8eSBarry Smith } 350085535b8eSBarry Smith barray -= bs2; 350185535b8eSBarry Smith } 350285535b8eSBarry Smith 350385535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 350485535b8eSBarry Smith col = in[j] - cstart; 35059566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3506f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3507f7d195e4SLawrence Mitchell continue; 3508f7d195e4SLawrence Mitchell } else { 3509f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 351085535b8eSBarry Smith if (mat->was_assembled) { 351148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 351285535b8eSBarry Smith 351385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 351485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35159371c9d4SSatish Balay { 35169371c9d4SSatish Balay PetscInt data; 3517eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 351808401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 351985535b8eSBarry Smith } 352085535b8eSBarry Smith #else 352108401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 352285535b8eSBarry Smith #endif 352385535b8eSBarry Smith #endif 352485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3525eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 352685535b8eSBarry Smith col = (col - 1) / bs; 352785535b8eSBarry Smith #else 352885535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 352985535b8eSBarry Smith #endif 353085535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 35319566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 353285535b8eSBarry Smith col = in[j]; 353385535b8eSBarry Smith } 353426fbe8dcSKarl Rupp } else col = in[j]; 35359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 353685535b8eSBarry Smith } 353785535b8eSBarry Smith } 353885535b8eSBarry Smith } else { 353985535b8eSBarry Smith if (!baij->donotstash) { 354085535b8eSBarry Smith if (roworiented) { 35419566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 354285535b8eSBarry Smith } else { 35439566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 354485535b8eSBarry Smith } 354585535b8eSBarry Smith } 354685535b8eSBarry Smith } 354785535b8eSBarry Smith } 354885535b8eSBarry Smith 354985535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35509566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355285535b8eSBarry Smith } 3553dfb205c3SBarry Smith 3554dfb205c3SBarry Smith /*@ 3555*d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3556dfb205c3SBarry Smith 3557d083f849SBarry Smith Collective 3558dfb205c3SBarry Smith 3559dfb205c3SBarry Smith Input Parameters: 3560dfb205c3SBarry Smith + comm - MPI communicator 3561dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 356211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3563dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3564*d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3565*d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3566*d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3567*d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3568483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3569dfb205c3SBarry Smith . j - column indices 3570dfb205c3SBarry Smith - a - matrix values 3571dfb205c3SBarry Smith 3572dfb205c3SBarry Smith Output Parameter: 3573dfb205c3SBarry Smith . mat - the matrix 3574dfb205c3SBarry Smith 3575dfb205c3SBarry Smith Level: intermediate 3576dfb205c3SBarry Smith 3577dfb205c3SBarry Smith Notes: 357867be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3579dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 358011a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3581dfb205c3SBarry Smith 35823adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35833adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35843adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35853adadaf3SJed Brown with column-major ordering within blocks. 35863adadaf3SJed Brown 3587*d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3588dfb205c3SBarry Smith 358967be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35907d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3591dfb205c3SBarry Smith @*/ 3592d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3593d71ae5a4SJacob Faibussowitsch { 3594dfb205c3SBarry Smith PetscFunctionBegin; 35955f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35965f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35979566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35989566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35999566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 36009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 36019566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 36029566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 36039566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 36049566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 36053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3606dfb205c3SBarry Smith } 3607e561ad89SHong Zhang 3608d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3609d71ae5a4SJacob Faibussowitsch { 3610bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3611bd153df0SHong Zhang PetscInt *indx; 3612bd153df0SHong Zhang PetscScalar *values; 3613e561ad89SHong Zhang 3614e561ad89SHong Zhang PetscFunctionBegin; 36159566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3616bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3617bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36182c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3619bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 362077f764caSHong Zhang PetscMPIInt rank, size; 3621e561ad89SHong Zhang 36229566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36239371c9d4SSatish Balay mbs = m / bs; 36249371c9d4SSatish Balay Nbs = N / cbs; 362548a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3626da91a574SPierre Jolivet nbs = n / cbs; 3627e561ad89SHong Zhang 36289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3629d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 363077f764caSHong Zhang 36319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 363377f764caSHong Zhang if (rank == size - 1) { 363477f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36355f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 363677f764caSHong Zhang } 363777f764caSHong Zhang 3638d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3639bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36409566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3641647a6520SHong Zhang nnz = nnz / bs; 3642647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36439566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36449566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3645e561ad89SHong Zhang } 36469566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3647e561ad89SHong Zhang 36489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36509566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36519566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36529566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36539566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3654d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36559566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3656e561ad89SHong Zhang } 3657e561ad89SHong Zhang 3658bd153df0SHong Zhang /* numeric phase */ 36599566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36609566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3661e561ad89SHong Zhang 3662e561ad89SHong Zhang for (i = 0; i < m; i++) { 36639566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3664e561ad89SHong Zhang Ii = i + rstart; 36659566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36669566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3667e561ad89SHong Zhang } 36689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3671e561ad89SHong Zhang } 3672