xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision d8a51d2aac522cef49bfbd84fd4cf473dc3fa6ee)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
614e879edeSHong Zhang   PetscScalar       *va, *vv;
624e879edeSHong Zhang   Vec                vB, vA;
634e879edeSHong Zhang   const PetscScalar *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
669566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
101d71ae5a4SJacob Faibussowitsch {
1027fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1037fc3c18eSBarry Smith 
1047fc3c18eSBarry Smith   PetscFunctionBegin;
1059566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1069566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087fc3c18eSBarry Smith }
1097fc3c18eSBarry Smith 
11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
111d71ae5a4SJacob Faibussowitsch {
1127fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1137fc3c18eSBarry Smith 
1147fc3c18eSBarry Smith   PetscFunctionBegin;
1159566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1169566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1187fc3c18eSBarry Smith }
1197fc3c18eSBarry Smith 
120537820f0SBarry Smith /*
121537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
12257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
123e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
12457b952d6SSatish Balay    length of colmap equals the global matrix length.
12557b952d6SSatish Balay */
126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
127d71ae5a4SJacob Faibussowitsch {
12857b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
12957b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
130d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
13157b952d6SSatish Balay 
132d64ed03dSBarry Smith   PetscFunctionBegin;
133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
134eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
135c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
13648e59246SSatish Balay #else
1379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
138928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
13948e59246SSatish Balay #endif
1403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14157b952d6SSatish Balay }
14257b952d6SSatish Balay 
143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
144a8f51744SPierre Jolivet   do { \
14580c1aa95SSatish Balay     brow = row / bs; \
1468e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1478e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1489371c9d4SSatish Balay     rmax = aimax[brow]; \
1499371c9d4SSatish Balay     nrow = ailen[brow]; \
15080c1aa95SSatish Balay     bcol = col / bs; \
1519371c9d4SSatish Balay     ridx = row % bs; \
1529371c9d4SSatish Balay     cidx = col % bs; \
1539371c9d4SSatish Balay     low  = 0; \
1549371c9d4SSatish Balay     high = nrow; \
155ab26458aSBarry Smith     while (high - low > 3) { \
156ab26458aSBarry Smith       t = (low + high) / 2; \
157ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
158ab26458aSBarry Smith       else low = t; \
159ab26458aSBarry Smith     } \
160ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
16180c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
16280c1aa95SSatish Balay       if (rp[_i] == bcol) { \
16380c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
164eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
165eada6651SSatish Balay         else *bap = value; \
166ac7a638eSSatish Balay         goto a_noinsert; \
16780c1aa95SSatish Balay       } \
16880c1aa95SSatish Balay     } \
16989280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1705f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
171fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
17280c1aa95SSatish Balay     N = nrow++ - 1; \
17380c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1759566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1769566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
17780c1aa95SSatish Balay     rp[_i]                          = bcol; \
17880c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
179ac7a638eSSatish Balay   a_noinsert:; \
18080c1aa95SSatish Balay     ailen[brow] = nrow; \
181a8f51744SPierre Jolivet   } while (0)
18257b952d6SSatish Balay 
183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
184a8f51744SPierre Jolivet   do { \
185ac7a638eSSatish Balay     brow = row / bs; \
1868e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
1878e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
1889371c9d4SSatish Balay     rmax = bimax[brow]; \
1899371c9d4SSatish Balay     nrow = bilen[brow]; \
190ac7a638eSSatish Balay     bcol = col / bs; \
1919371c9d4SSatish Balay     ridx = row % bs; \
1929371c9d4SSatish Balay     cidx = col % bs; \
1939371c9d4SSatish Balay     low  = 0; \
1949371c9d4SSatish Balay     high = nrow; \
195ac7a638eSSatish Balay     while (high - low > 3) { \
196ac7a638eSSatish Balay       t = (low + high) / 2; \
197ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
198ac7a638eSSatish Balay       else low = t; \
199ac7a638eSSatish Balay     } \
200ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
201ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
202ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
203ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
204ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
205ac7a638eSSatish Balay         else *bap = value; \
206ac7a638eSSatish Balay         goto b_noinsert; \
207ac7a638eSSatish Balay       } \
208ac7a638eSSatish Balay     } \
20989280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2105f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
211fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
212ac7a638eSSatish Balay     N = nrow++ - 1; \
213ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2149566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2159566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2169566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
217ac7a638eSSatish Balay     rp[_i]                          = bcol; \
218ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
219ac7a638eSSatish Balay   b_noinsert:; \
220ac7a638eSSatish Balay     bilen[brow] = nrow; \
221a8f51744SPierre Jolivet   } while (0)
222ac7a638eSSatish Balay 
223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
224d71ae5a4SJacob Faibussowitsch {
22557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
22693fea6afSBarry Smith   MatScalar    value;
227ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
228b24ad042SBarry Smith   PetscInt     i, j, row, col;
229d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
230d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
231d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
23257b952d6SSatish Balay 
233eada6651SSatish Balay   /* Some Variables required in the macro */
23480c1aa95SSatish Balay   Mat          A     = baij->A;
23580c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
236b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2373eda8832SBarry Smith   MatScalar   *aa = a->a;
238ac7a638eSSatish Balay 
239ac7a638eSSatish Balay   Mat          B     = baij->B;
240ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
241b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2423eda8832SBarry Smith   MatScalar   *ba = b->a;
243ac7a638eSSatish Balay 
244b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
245b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2463eda8832SBarry Smith   MatScalar *ap, *bap;
24780c1aa95SSatish Balay 
248d64ed03dSBarry Smith   PetscFunctionBegin;
24957b952d6SSatish Balay   for (i = 0; i < m; i++) {
2505ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2515f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
25257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
25357b952d6SSatish Balay       row = im[i] - rstart_orig;
25457b952d6SSatish Balay       for (j = 0; j < n; j++) {
25557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
25657b952d6SSatish Balay           col = in[j] - cstart_orig;
257db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
258db4deed7SKarl Rupp           else value = v[i + j * m];
259d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
260f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
261f7d195e4SLawrence Mitchell           continue;
262f7d195e4SLawrence Mitchell         } else {
263f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
26457b952d6SSatish Balay           if (mat->was_assembled) {
26548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
267eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
268bba1ac68SSatish Balay             col = col - 1;
26948e59246SSatish Balay #else
270bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
27148e59246SSatish Balay #endif
272c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
2739566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2748295de27SSatish Balay               col = in[j];
2759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2769bf004c3SSatish Balay               B     = baij->B;
2779bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2789371c9d4SSatish Balay               bimax = b->imax;
2799371c9d4SSatish Balay               bi    = b->i;
2809371c9d4SSatish Balay               bilen = b->ilen;
2819371c9d4SSatish Balay               bj    = b->j;
2829bf004c3SSatish Balay               ba    = b->a;
283f7d195e4SLawrence Mitchell             } else {
284f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
285f7d195e4SLawrence Mitchell               col += in[j] % bs;
286f7d195e4SLawrence Mitchell             }
2878295de27SSatish Balay           } else col = in[j];
288db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
289db4deed7SKarl Rupp           else value = v[i + j * m];
290d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
2919566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
29257b952d6SSatish Balay         }
29357b952d6SSatish Balay       }
294d64ed03dSBarry Smith     } else {
2955f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
29690f02eecSBarry Smith       if (!baij->donotstash) {
2975080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
298ff2fd236SBarry Smith         if (roworiented) {
2999566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
300ff2fd236SBarry Smith         } else {
3019566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
30257b952d6SSatish Balay         }
30357b952d6SSatish Balay       }
30457b952d6SSatish Balay     }
30590f02eecSBarry Smith   }
3063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30757b952d6SSatish Balay }
30857b952d6SSatish Balay 
309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
310d71ae5a4SJacob Faibussowitsch {
311880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3128ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
313880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3148ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
315880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
316880c6e6aSBarry Smith   const PetscScalar *value       = v;
317880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
318880c6e6aSBarry Smith 
319880c6e6aSBarry Smith   PetscFunctionBegin;
320880c6e6aSBarry Smith   rp    = aj + ai[row];
321880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
322880c6e6aSBarry Smith   rmax  = imax[row];
323880c6e6aSBarry Smith   nrow  = ailen[row];
3248ab52850SBarry Smith   value = v;
3258ab52850SBarry Smith   low   = 0;
3268ab52850SBarry Smith   high  = nrow;
327880c6e6aSBarry Smith   while (high - low > 7) {
328880c6e6aSBarry Smith     t = (low + high) / 2;
329880c6e6aSBarry Smith     if (rp[t] > col) high = t;
330880c6e6aSBarry Smith     else low = t;
331880c6e6aSBarry Smith   }
332880c6e6aSBarry Smith   for (i = low; i < high; i++) {
333880c6e6aSBarry Smith     if (rp[i] > col) break;
334880c6e6aSBarry Smith     if (rp[i] == col) {
335880c6e6aSBarry Smith       bap = ap + bs2 * i;
336880c6e6aSBarry Smith       if (roworiented) {
337880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3388ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
339ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
340880c6e6aSBarry Smith           }
341880c6e6aSBarry Smith         } else {
3428ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
343ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
344880c6e6aSBarry Smith           }
345880c6e6aSBarry Smith         }
346880c6e6aSBarry Smith       } else {
347880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3488ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
349ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
350880c6e6aSBarry Smith             bap += bs;
351880c6e6aSBarry Smith           }
352880c6e6aSBarry Smith         } else {
3538ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
354ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
355880c6e6aSBarry Smith             bap += bs;
356880c6e6aSBarry Smith           }
357880c6e6aSBarry Smith         }
358880c6e6aSBarry Smith       }
359880c6e6aSBarry Smith       goto noinsert2;
360880c6e6aSBarry Smith     }
361880c6e6aSBarry Smith   }
362880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3635f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
364880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3659371c9d4SSatish Balay   N = nrow++ - 1;
3669371c9d4SSatish Balay   high++;
367880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3689566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3699566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
370880c6e6aSBarry Smith   rp[i] = col;
371880c6e6aSBarry Smith   bap   = ap + bs2 * i;
372880c6e6aSBarry Smith   if (roworiented) {
3738ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
374ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
375880c6e6aSBarry Smith     }
376880c6e6aSBarry Smith   } else {
3778ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
378ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
379880c6e6aSBarry Smith     }
380880c6e6aSBarry Smith   }
381880c6e6aSBarry Smith noinsert2:;
382880c6e6aSBarry Smith   ailen[row] = nrow;
3833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
384880c6e6aSBarry Smith }
385880c6e6aSBarry Smith 
3868ab52850SBarry Smith /*
3878ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3888ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3898ab52850SBarry Smith */
39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
391d71ae5a4SJacob Faibussowitsch {
392ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
393dd6ea824SBarry Smith   const PetscScalar *value;
394f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
395ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
396899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
397899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
398d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
399ab26458aSBarry Smith 
400b16ae2b1SBarry Smith   PetscFunctionBegin;
40130793edcSSatish Balay   if (!barray) {
4029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
40382502324SSatish Balay     baij->barray = barray;
40430793edcSSatish Balay   }
40530793edcSSatish Balay 
40626fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
40726fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
40826fbe8dcSKarl Rupp 
409ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4105ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4116bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
412ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
413ab26458aSBarry Smith       row = im[i] - rstart;
414ab26458aSBarry Smith       for (j = 0; j < n; j++) {
41515b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
41615b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
417f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
41815b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
419f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
42015b57d14SSatish Balay         } else { /* Here a copy is required */
421ab26458aSBarry Smith           if (roworiented) {
42253ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
423ab26458aSBarry Smith           } else {
42453ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
425abef11f7SSatish Balay           }
42653ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
42726fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
42853ef36baSBarry Smith             barray += bs;
42947513183SBarry Smith           }
43030793edcSSatish Balay           barray -= bs2;
43115b57d14SSatish Balay         }
432abef11f7SSatish Balay 
433abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
434abef11f7SSatish Balay           col = in[j] - cstart;
4359566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
436f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
437f7d195e4SLawrence Mitchell           continue;
438f7d195e4SLawrence Mitchell         } else {
439f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
440ab26458aSBarry Smith           if (mat->was_assembled) {
44148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
442a5eb4965SSatish Balay 
4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
444aa482453SBarry Smith   #if defined(PETSC_USE_CTABLE)
4459371c9d4SSatish Balay             {
4469371c9d4SSatish Balay               PetscInt data;
447eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
44808401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
449fa46199cSSatish Balay             }
45048e59246SSatish Balay   #else
45108401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
452a5eb4965SSatish Balay   #endif
45348e59246SSatish Balay #endif
454aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
455eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
456fa46199cSSatish Balay             col = (col - 1) / bs;
45748e59246SSatish Balay #else
458a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1) / bs;
45948e59246SSatish Balay #endif
4600e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
4619566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
462ab26458aSBarry Smith               col = in[j];
4635f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
464db4deed7SKarl Rupp           } else col = in[j];
4659566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
466ab26458aSBarry Smith         }
467ab26458aSBarry Smith       }
468d64ed03dSBarry Smith     } else {
4695f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
470ab26458aSBarry Smith       if (!baij->donotstash) {
471ff2fd236SBarry Smith         if (roworiented) {
4729566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
473ff2fd236SBarry Smith         } else {
4749566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
475ff2fd236SBarry Smith         }
476abef11f7SSatish Balay       }
477ab26458aSBarry Smith     }
478ab26458aSBarry Smith   }
4793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480ab26458aSBarry Smith }
4816fa18ffdSBarry Smith 
4820bdbc534SSatish Balay #define HASH_KEY             0.6180339887
483b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
484b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
485b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
48666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
487d71ae5a4SJacob Faibussowitsch {
4880bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
489ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
490b24ad042SBarry Smith   PetscInt     i, j, row, col;
491d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
492d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
493d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
494329f5518SBarry Smith   PetscReal    tmp;
4953eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
496b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
4970bdbc534SSatish Balay 
4980bdbc534SSatish Balay   PetscFunctionBegin;
4990bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50076bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5015f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5025f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50376bd3646SJed Brown     }
5040bdbc534SSatish Balay     row = im[i];
505c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5060bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5070bdbc534SSatish Balay         col = in[j];
508db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
509db4deed7SKarl Rupp         else value = v[i + j * m];
510b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
511c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
512c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5130bdbc534SSatish Balay 
514c2760754SSatish Balay         idx = h1;
51576bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
516187ce0cbSSatish Balay           insert_ct++;
517187ce0cbSSatish Balay           total_ct++;
518187ce0cbSSatish Balay           if (HT[idx] != key) {
5199371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5209371c9d4SSatish Balay               ;
521187ce0cbSSatish Balay             if (idx == size) {
5229371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5239371c9d4SSatish Balay                 ;
5245f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
525187ce0cbSSatish Balay             }
526187ce0cbSSatish Balay           }
52776bd3646SJed Brown         } else if (HT[idx] != key) {
5289371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
5299371c9d4SSatish Balay             ;
530c2760754SSatish Balay           if (idx == size) {
5319371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
5329371c9d4SSatish Balay               ;
5335f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
534c2760754SSatish Balay           }
535c2760754SSatish Balay         }
536c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
537c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
538c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5390bdbc534SSatish Balay       }
54026fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
541ff2fd236SBarry Smith       if (roworiented) {
5429566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
543ff2fd236SBarry Smith       } else {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5450bdbc534SSatish Balay       }
5460bdbc534SSatish Balay     }
5470bdbc534SSatish Balay   }
54876bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
549abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
550abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55176bd3646SJed Brown   }
5523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5530bdbc534SSatish Balay }
5540bdbc534SSatish Balay 
55566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
556d71ae5a4SJacob Faibussowitsch {
5570bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
558ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
559b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
560899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
561d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
562b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
563329f5518SBarry Smith   PetscReal          tmp;
5643eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
565dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
566b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5670bdbc534SSatish Balay 
568d0a41580SSatish Balay   PetscFunctionBegin;
56926fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57026fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57126fbe8dcSKarl Rupp 
5720bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57376bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5745f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5755f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57676bd3646SJed Brown     }
5770bdbc534SSatish Balay     row = im[i];
578ab715e2cSSatish Balay     v_t = v + i * nbs2;
579c2760754SSatish Balay     if (row >= rstart && row < rend) {
5800bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5810bdbc534SSatish Balay         col = in[j];
5820bdbc534SSatish Balay 
5830bdbc534SSatish Balay         /* Look up into the Hash Table */
584c2760754SSatish Balay         key = row * Nbs + col + 1;
585c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5860bdbc534SSatish Balay 
587c2760754SSatish Balay         idx = h1;
58876bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
589187ce0cbSSatish Balay           total_ct++;
590187ce0cbSSatish Balay           insert_ct++;
591187ce0cbSSatish Balay           if (HT[idx] != key) {
5929371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5939371c9d4SSatish Balay               ;
594187ce0cbSSatish Balay             if (idx == size) {
5959371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5969371c9d4SSatish Balay                 ;
5975f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598187ce0cbSSatish Balay             }
599187ce0cbSSatish Balay           }
60076bd3646SJed Brown         } else if (HT[idx] != key) {
6019371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
6029371c9d4SSatish Balay             ;
603c2760754SSatish Balay           if (idx == size) {
6049371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
6059371c9d4SSatish Balay               ;
6065f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
607c2760754SSatish Balay           }
608c2760754SSatish Balay         }
609c2760754SSatish Balay         baij_a = HD[idx];
6100bdbc534SSatish Balay         if (roworiented) {
611c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
612187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
613187ce0cbSSatish Balay           value = v_t;
614187ce0cbSSatish Balay           v_t += bs;
615fef45726SSatish Balay           if (addv == ADD_VALUES) {
616c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
617ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
618b4cc0f5aSSatish Balay             }
619fef45726SSatish Balay           } else {
620c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
621ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
622fef45726SSatish Balay             }
623fef45726SSatish Balay           }
6240bdbc534SSatish Balay         } else {
6250bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
626fef45726SSatish Balay           if (addv == ADD_VALUES) {
627b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
628ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
629fef45726SSatish Balay             }
630fef45726SSatish Balay           } else {
631fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
632ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
633b4cc0f5aSSatish Balay             }
6340bdbc534SSatish Balay           }
6350bdbc534SSatish Balay         }
6360bdbc534SSatish Balay       }
6370bdbc534SSatish Balay     } else {
6380bdbc534SSatish Balay       if (!baij->donotstash) {
6390bdbc534SSatish Balay         if (roworiented) {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410bdbc534SSatish Balay         } else {
6429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430bdbc534SSatish Balay         }
6440bdbc534SSatish Balay       }
6450bdbc534SSatish Balay     }
6460bdbc534SSatish Balay   }
64776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
648abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
649abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
65076bd3646SJed Brown   }
6513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6520bdbc534SSatish Balay }
653133cdb44SSatish Balay 
65466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
655d71ae5a4SJacob Faibussowitsch {
656d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
657d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
658d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
659d6de1c52SSatish Balay 
660133cdb44SSatish Balay   PetscFunctionBegin;
661d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66254c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66354c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
664d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
665d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
666d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
66754c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66854c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
669d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
670d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6719566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
672d64ed03dSBarry Smith         } else {
67348a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
674aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
675eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
676fa46199cSSatish Balay           data--;
67748e59246SSatish Balay #else
67848e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
67948e59246SSatish Balay #endif
68048e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
681d9d09a02SSatish Balay           else {
68248e59246SSatish Balay             col = data + idxn[j] % bs;
6839566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
684d6de1c52SSatish Balay           }
685d6de1c52SSatish Balay         }
686d6de1c52SSatish Balay       }
687f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
688d6de1c52SSatish Balay   }
6893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
690d6de1c52SSatish Balay }
691d6de1c52SSatish Balay 
69266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
693d71ae5a4SJacob Faibussowitsch {
694d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
695d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
696d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
697329f5518SBarry Smith   PetscReal    sum = 0.0;
6983eda8832SBarry Smith   MatScalar   *v;
699d6de1c52SSatish Balay 
700d64ed03dSBarry Smith   PetscFunctionBegin;
701d6de1c52SSatish Balay   if (baij->size == 1) {
7029566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
703d6de1c52SSatish Balay   } else {
704d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
705d6de1c52SSatish Balay       v  = amat->a;
7068a62d963SHong Zhang       nz = amat->nz * bs2;
7078a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7089371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7099371c9d4SSatish Balay         v++;
710d6de1c52SSatish Balay       }
711d6de1c52SSatish Balay       v  = bmat->a;
7128a62d963SHong Zhang       nz = bmat->nz * bs2;
7138a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7149371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7159371c9d4SSatish Balay         v++;
716d6de1c52SSatish Balay       }
7171c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7188f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7198a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7208a62d963SHong Zhang       PetscReal *tmp, *tmp2;
721899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7229566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7249371c9d4SSatish Balay       v  = amat->a;
7259371c9d4SSatish Balay       jj = amat->j;
7268a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7278a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7288a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7298a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7309371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7319371c9d4SSatish Balay             v++;
7328a62d963SHong Zhang           }
7338a62d963SHong Zhang         }
7348a62d963SHong Zhang         jj++;
7358a62d963SHong Zhang       }
7369371c9d4SSatish Balay       v  = bmat->a;
7379371c9d4SSatish Balay       jj = bmat->j;
7388a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7398a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7408a62d963SHong Zhang           col = bs * garray[*jj] + j;
7418a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7429371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7439371c9d4SSatish Balay             v++;
7448a62d963SHong Zhang           }
7458a62d963SHong Zhang         }
7468a62d963SHong Zhang         jj++;
7478a62d963SHong Zhang       }
7481c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7498a62d963SHong Zhang       *nrm = 0.0;
750d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7518a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7528a62d963SHong Zhang       }
7539566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7549566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7558a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
756577dd1f9SKris Buschelman       PetscReal *sums;
7579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7588a62d963SHong Zhang       sum = 0.0;
7598a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7608a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7618a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7628a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7638a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7648a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7658a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7669371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7679371c9d4SSatish Balay               v++;
7688a62d963SHong Zhang             }
7698a62d963SHong Zhang           }
7708a62d963SHong Zhang         }
7718a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7728a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7738a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7748a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7758a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7769371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7779371c9d4SSatish Balay               v++;
7788a62d963SHong Zhang             }
7798a62d963SHong Zhang           }
7808a62d963SHong Zhang         }
7818a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7828a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7838a62d963SHong Zhang         }
7848a62d963SHong Zhang       }
7851c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7869566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
787ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
788d64ed03dSBarry Smith   }
7893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
790d6de1c52SSatish Balay }
79157b952d6SSatish Balay 
792fef45726SSatish Balay /*
793fef45726SSatish Balay   Creates the hash table, and sets the table
794fef45726SSatish Balay   This table is created only once.
795fef45726SSatish Balay   If new entried need to be added to the matrix
796fef45726SSatish Balay   then the hash table has to be destroyed and
797fef45726SSatish Balay   recreated.
798fef45726SSatish Balay */
79966976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
800d71ae5a4SJacob Faibussowitsch {
801596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
802596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
803596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
804b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
805fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
806899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
807b24ad042SBarry Smith   PetscInt    *HT, key;
8083eda8832SBarry Smith   MatScalar  **HD;
809329f5518SBarry Smith   PetscReal    tmp;
8106cf91177SBarry Smith #if defined(PETSC_USE_INFO)
811b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8124a15367fSSatish Balay #endif
813fef45726SSatish Balay 
814d64ed03dSBarry Smith   PetscFunctionBegin;
8153ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
816fef45726SSatish Balay 
817fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
818fca92195SBarry Smith   ht_size       = baij->ht_size;
8190bdbc534SSatish Balay 
820fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8219566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
822b9e4cc15SSatish Balay   HD = baij->hd;
823a07cd24cSSatish Balay   HT = baij->ht;
824b9e4cc15SSatish Balay 
825596b8d2eSBarry Smith   /* Loop Over A */
8260bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
827596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8280bdbc534SSatish Balay       row = i + rstart;
8290bdbc534SSatish Balay       col = aj[j] + cstart;
830596b8d2eSBarry Smith 
831187ce0cbSSatish Balay       key = row * Nbs + col + 1;
832fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
833fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
834fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
835fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
836fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
837596b8d2eSBarry Smith           break;
8386cf91177SBarry Smith #if defined(PETSC_USE_INFO)
839187ce0cbSSatish Balay         } else {
840187ce0cbSSatish Balay           ct++;
841187ce0cbSSatish Balay #endif
842596b8d2eSBarry Smith         }
843187ce0cbSSatish Balay       }
8446cf91177SBarry Smith #if defined(PETSC_USE_INFO)
845187ce0cbSSatish Balay       if (k > max) max = k;
846187ce0cbSSatish Balay #endif
847596b8d2eSBarry Smith     }
848596b8d2eSBarry Smith   }
849596b8d2eSBarry Smith   /* Loop Over B */
8500bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
851596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8520bdbc534SSatish Balay       row = i + rstart;
8530bdbc534SSatish Balay       col = garray[bj[j]];
854187ce0cbSSatish Balay       key = row * Nbs + col + 1;
855fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
856fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
857fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
858fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
859fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
860596b8d2eSBarry Smith           break;
8616cf91177SBarry Smith #if defined(PETSC_USE_INFO)
862187ce0cbSSatish Balay         } else {
863187ce0cbSSatish Balay           ct++;
864187ce0cbSSatish Balay #endif
865596b8d2eSBarry Smith         }
866187ce0cbSSatish Balay       }
8676cf91177SBarry Smith #if defined(PETSC_USE_INFO)
868187ce0cbSSatish Balay       if (k > max) max = k;
869187ce0cbSSatish Balay #endif
870596b8d2eSBarry Smith     }
871596b8d2eSBarry Smith   }
872596b8d2eSBarry Smith 
873596b8d2eSBarry Smith   /* Print Summary */
8746cf91177SBarry Smith #if defined(PETSC_USE_INFO)
875fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87626fbe8dcSKarl Rupp     if (HT[i]) j++;
877c38d4ed2SBarry Smith   }
8789566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
879187ce0cbSSatish Balay #endif
8803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
881596b8d2eSBarry Smith }
88257b952d6SSatish Balay 
88366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
884d71ae5a4SJacob Faibussowitsch {
885bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
886b24ad042SBarry Smith   PetscInt     nstash, reallocs;
887bbb85fb3SSatish Balay 
888bbb85fb3SSatish Balay   PetscFunctionBegin;
8893ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
890bbb85fb3SSatish Balay 
8919566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8939566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8949566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8959566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8969566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
898bbb85fb3SSatish Balay }
899bbb85fb3SSatish Balay 
90066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
901d71ae5a4SJacob Faibussowitsch {
902bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90391c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
904b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
905e44c0bd4SBarry Smith   PetscInt    *row, *col;
906ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9073eda8832SBarry Smith   MatScalar   *val;
908b24ad042SBarry Smith   PetscMPIInt  n;
909bbb85fb3SSatish Balay 
910bbb85fb3SSatish Balay   PetscFunctionBegin;
9115fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9124cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
913a2d1c673SSatish Balay     while (1) {
9149566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
915a2d1c673SSatish Balay       if (!flg) break;
916a2d1c673SSatish Balay 
917bbb85fb3SSatish Balay       for (i = 0; i < n;) {
918bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
91926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92126fbe8dcSKarl Rupp         }
922bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
923bbb85fb3SSatish Balay         else ncols = n - i;
924bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9259566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
926bbb85fb3SSatish Balay         i = j;
927bbb85fb3SSatish Balay       }
928bbb85fb3SSatish Balay     }
9299566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
930a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9315e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
932a2d1c673SSatish Balay        restore the original flags */
933a2d1c673SSatish Balay     r1 = baij->roworiented;
934a2d1c673SSatish Balay     r2 = a->roworiented;
93591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93626fbe8dcSKarl Rupp 
9377c922b88SBarry Smith     baij->roworiented                             = PETSC_FALSE;
9387c922b88SBarry Smith     a->roworiented                                = PETSC_FALSE;
9395e116b59SBarry Smith     (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE;
940a2d1c673SSatish Balay     while (1) {
9419566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
942a2d1c673SSatish Balay       if (!flg) break;
943a2d1c673SSatish Balay 
944a2d1c673SSatish Balay       for (i = 0; i < n;) {
945a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94626fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
94726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94826fbe8dcSKarl Rupp         }
949a2d1c673SSatish Balay         if (j < n) ncols = j - i;
950a2d1c673SSatish Balay         else ncols = n - i;
9519566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
952a2d1c673SSatish Balay         i = j;
953a2d1c673SSatish Balay       }
954a2d1c673SSatish Balay     }
9559566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95626fbe8dcSKarl Rupp 
957a2d1c673SSatish Balay     baij->roworiented                           = r1;
958a2d1c673SSatish Balay     a->roworiented                              = r2;
9595e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
960bbb85fb3SSatish Balay   }
961bbb85fb3SSatish Balay 
9629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
964bbb85fb3SSatish Balay 
965bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9666aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
967bbb85fb3SSatish Balay   /*
968bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
969bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
970bbb85fb3SSatish Balay   */
971bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9725f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
97348a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
974bbb85fb3SSatish Balay   }
975bbb85fb3SSatish Balay 
97648a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
979bbb85fb3SSatish Balay 
9806cf91177SBarry Smith #if defined(PETSC_USE_INFO)
981bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9829566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98326fbe8dcSKarl Rupp 
984bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
985bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
986bbb85fb3SSatish Balay   }
987bbb85fb3SSatish Balay #endif
988bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9899566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99026fbe8dcSKarl Rupp 
991bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
992bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
993bbb85fb3SSatish Balay   }
994bbb85fb3SSatish Balay 
9959566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
99626fbe8dcSKarl Rupp 
997f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9984f9cfa9eSBarry Smith 
9994f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
10004f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
1001e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
10021c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1003e56f5c9eSBarry Smith   }
10043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1005bbb85fb3SSatish Balay }
100657b952d6SSatish Balay 
10077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10089804daf3SBarry Smith #include <petscdraw.h>
1009d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1010d71ae5a4SJacob Faibussowitsch {
101157b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10127da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1013d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1014ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1015b0a32e0cSBarry Smith   PetscViewer       sviewer;
1016f3ef73ceSBarry Smith   PetscViewerFormat format;
101757b952d6SSatish Balay 
1018d64ed03dSBarry Smith   PetscFunctionBegin;
10199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
102132077d6dSBarry Smith   if (iascii) {
10229566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1023456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10244e220ebcSLois Curfman McInnes       MatInfo info;
10259566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10269566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10279566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10289371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10299371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10309566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10319566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10329566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10339566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10349566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10369566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10379566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10383ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1039fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10409566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10413ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104204929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10433ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104457b952d6SSatish Balay     }
104557b952d6SSatish Balay   }
104657b952d6SSatish Balay 
10470f5bd95cSBarry Smith   if (isdraw) {
1048b0a32e0cSBarry Smith     PetscDraw draw;
1049ace3abfcSBarry Smith     PetscBool isnull;
10509566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10519566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10523ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
105357b952d6SSatish Balay   }
105457b952d6SSatish Balay 
10557da1fb6eSBarry Smith   {
105657b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
105757b952d6SSatish Balay     Mat          A;
105857b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1059d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10603eda8832SBarry Smith     MatScalar   *a;
10613e219373SBarry Smith     const char  *matname;
106257b952d6SSatish Balay 
1063f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1064f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10659566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1066dd400576SPatrick Sanan     if (rank == 0) {
10679566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1068d64ed03dSBarry Smith     } else {
10699566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
107057b952d6SSatish Balay     }
10719566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10729566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10739566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
107457b952d6SSatish Balay 
107557b952d6SSatish Balay     /* copy over the A part */
107657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10779371c9d4SSatish Balay     ai   = Aloc->i;
10789371c9d4SSatish Balay     aj   = Aloc->j;
10799371c9d4SSatish Balay     a    = Aloc->a;
10809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
108157b952d6SSatish Balay 
108257b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1083899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108426fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108557b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1086899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
108757b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10889566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10899371c9d4SSatish Balay           col++;
10909371c9d4SSatish Balay           a += bs;
109157b952d6SSatish Balay         }
109257b952d6SSatish Balay       }
109357b952d6SSatish Balay     }
109457b952d6SSatish Balay     /* copy over the B part */
109557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10969371c9d4SSatish Balay     ai   = Aloc->i;
10979371c9d4SSatish Balay     aj   = Aloc->j;
10989371c9d4SSatish Balay     a    = Aloc->a;
109957b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1100899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
110126fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
110257b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
110357b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
110457b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11059566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11069371c9d4SSatish Balay           col++;
11079371c9d4SSatish Balay           a += bs;
110857b952d6SSatish Balay         }
110957b952d6SSatish Balay       }
111057b952d6SSatish Balay     }
11119566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11129566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11139566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
111455843e3eSBarry Smith     /*
111555843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1116b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
111755843e3eSBarry Smith     */
11189566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
111923a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1120dd400576SPatrick Sanan     if (rank == 0) {
112123a3927dSBarry Smith       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname));
11229566063dSJacob Faibussowitsch       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer));
112357b952d6SSatish Balay     }
11249566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11259566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
112657b952d6SSatish Balay   }
11273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112857b952d6SSatish Balay }
112957b952d6SSatish Balay 
1130618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1131d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1132d71ae5a4SJacob Faibussowitsch {
1133b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1134b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1135b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1136b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
113717a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
113817a3732bSBarry Smith   PetscInt64      nz, hnz;
1139b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1140b51a4376SLisandro Dalcin   PetscScalar    *matvals;
114117a3732bSBarry Smith   PetscMPIInt     rank;
1142660746e0SBarry Smith 
1143660746e0SBarry Smith   PetscFunctionBegin;
11449566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1145b51a4376SLisandro Dalcin 
1146b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1147b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1148b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1149b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1150b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1151b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1152b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1153b51a4376SLisandro Dalcin 
1154b51a4376SLisandro Dalcin   /* write matrix header */
1155660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11569371c9d4SSatish Balay   header[1] = M;
11579371c9d4SSatish Balay   header[2] = N;
115817a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
115917a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
116017a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11619566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1162660746e0SBarry Smith 
1163b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1165b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11669371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11679566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11689566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1169660746e0SBarry Smith 
1170b51a4376SLisandro Dalcin   /* fill in and store column indices */
11719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1172b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1173b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1174b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1175b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11769371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1177660746e0SBarry Smith       }
1178b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11799371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1180b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11819371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1182660746e0SBarry Smith     }
1183660746e0SBarry Smith   }
118417a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
11859566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11869566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1187660746e0SBarry Smith 
1188b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1190b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1191b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1192b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1193b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11949371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1195660746e0SBarry Smith       }
1196b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11979371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1198b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11999371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1200660746e0SBarry Smith     }
1201b51a4376SLisandro Dalcin   }
12029566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12039566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1204660746e0SBarry Smith 
1205b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12069566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1208660746e0SBarry Smith }
1209660746e0SBarry Smith 
1210d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1211d71ae5a4SJacob Faibussowitsch {
1212ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
121357b952d6SSatish Balay 
1214d64ed03dSBarry Smith   PetscFunctionBegin;
12159566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1219660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12209566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12211baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122357b952d6SSatish Balay }
122457b952d6SSatish Balay 
122566976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1226d71ae5a4SJacob Faibussowitsch {
1227cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1228b24ad042SBarry Smith   PetscInt     nt;
1229cee3aa6bSSatish Balay 
1230d64ed03dSBarry Smith   PetscFunctionBegin;
12319566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12325f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12339566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1234da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12359566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12369566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12379566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12389566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1240cee3aa6bSSatish Balay }
1241cee3aa6bSSatish Balay 
124266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1243d71ae5a4SJacob Faibussowitsch {
1244cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1245d64ed03dSBarry Smith 
1246d64ed03dSBarry Smith   PetscFunctionBegin;
12479566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12489566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12499566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12509566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1252cee3aa6bSSatish Balay }
1253cee3aa6bSSatish Balay 
125466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1255d71ae5a4SJacob Faibussowitsch {
1256cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1257cee3aa6bSSatish Balay 
1258d64ed03dSBarry Smith   PetscFunctionBegin;
1259cee3aa6bSSatish Balay   /* do nondiagonal part */
12609566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1261cee3aa6bSSatish Balay   /* do local part */
12629566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1263e4a140f6SJunchao Zhang   /* add partial results together */
12649566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1267cee3aa6bSSatish Balay }
1268cee3aa6bSSatish Balay 
126966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1270d71ae5a4SJacob Faibussowitsch {
1271cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1272cee3aa6bSSatish Balay 
1273d64ed03dSBarry Smith   PetscFunctionBegin;
1274cee3aa6bSSatish Balay   /* do nondiagonal part */
12759566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1276cee3aa6bSSatish Balay   /* do local part */
12779566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1278e4a140f6SJunchao Zhang   /* add partial results together */
12799566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12809566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1282cee3aa6bSSatish Balay }
1283cee3aa6bSSatish Balay 
1284cee3aa6bSSatish Balay /*
1285cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1286cee3aa6bSSatish Balay    diagonal block
1287cee3aa6bSSatish Balay */
128866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1289d71ae5a4SJacob Faibussowitsch {
1290d64ed03dSBarry Smith   PetscFunctionBegin;
12915f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12929566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1294cee3aa6bSSatish Balay }
1295cee3aa6bSSatish Balay 
129666976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1297d71ae5a4SJacob Faibussowitsch {
1298cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1299d64ed03dSBarry Smith 
1300d64ed03dSBarry Smith   PetscFunctionBegin;
13019566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
13029566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1304cee3aa6bSSatish Balay }
1305026e39d0SSatish Balay 
1306d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1307d71ae5a4SJacob Faibussowitsch {
1308acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
130987828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1310d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1311d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1312899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1313acdf5bf4SSatish Balay 
1314d64ed03dSBarry Smith   PetscFunctionBegin;
13155f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13165f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1317acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1318acdf5bf4SSatish Balay 
1319acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1320acdf5bf4SSatish Balay     /*
1321acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1322acdf5bf4SSatish Balay     */
1323acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1324b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1325bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1326acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
132726fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1328acdf5bf4SSatish Balay     }
13299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1330acdf5bf4SSatish Balay   }
1331d9d09a02SSatish Balay   lrow = row - brstart;
1332acdf5bf4SSatish Balay 
13339371c9d4SSatish Balay   pvA = &vworkA;
13349371c9d4SSatish Balay   pcA = &cworkA;
13359371c9d4SSatish Balay   pvB = &vworkB;
13369371c9d4SSatish Balay   pcB = &cworkB;
13379371c9d4SSatish Balay   if (!v) {
13389371c9d4SSatish Balay     pvA = NULL;
13399371c9d4SSatish Balay     pvB = NULL;
13409371c9d4SSatish Balay   }
13419371c9d4SSatish Balay   if (!idx) {
13429371c9d4SSatish Balay     pcA = NULL;
13439371c9d4SSatish Balay     if (!v) pcB = NULL;
13449371c9d4SSatish Balay   }
13459566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13469566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1347acdf5bf4SSatish Balay   nztot = nzA + nzB;
1348acdf5bf4SSatish Balay 
1349acdf5bf4SSatish Balay   cmap = mat->garray;
1350acdf5bf4SSatish Balay   if (v || idx) {
1351acdf5bf4SSatish Balay     if (nztot) {
1352acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1353b24ad042SBarry Smith       PetscInt imark = -1;
1354acdf5bf4SSatish Balay       if (v) {
1355acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1356acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1357d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1358acdf5bf4SSatish Balay           else break;
1359acdf5bf4SSatish Balay         }
1360acdf5bf4SSatish Balay         imark = i;
1361acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1362acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1363acdf5bf4SSatish Balay       }
1364acdf5bf4SSatish Balay       if (idx) {
1365acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1366acdf5bf4SSatish Balay         if (imark > -1) {
1367ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1368acdf5bf4SSatish Balay         } else {
1369acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
137026fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1371acdf5bf4SSatish Balay             else break;
1372acdf5bf4SSatish Balay           }
1373acdf5bf4SSatish Balay           imark = i;
1374acdf5bf4SSatish Balay         }
1375d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1376d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1377acdf5bf4SSatish Balay       }
1378d64ed03dSBarry Smith     } else {
1379f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1380f4259b30SLisandro Dalcin       if (v) *v = NULL;
1381d212a18eSSatish Balay     }
1382acdf5bf4SSatish Balay   }
1383acdf5bf4SSatish Balay   *nz = nztot;
13849566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13859566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1387acdf5bf4SSatish Balay }
1388acdf5bf4SSatish Balay 
1389d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1390d71ae5a4SJacob Faibussowitsch {
1391acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1392d64ed03dSBarry Smith 
1393d64ed03dSBarry Smith   PetscFunctionBegin;
13945f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1395acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1397acdf5bf4SSatish Balay }
1398acdf5bf4SSatish Balay 
139966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1400d71ae5a4SJacob Faibussowitsch {
140158667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1402d64ed03dSBarry Smith 
1403d64ed03dSBarry Smith   PetscFunctionBegin;
14049566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14059566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140758667388SSatish Balay }
14080ac07820SSatish Balay 
140966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1410d71ae5a4SJacob Faibussowitsch {
14114e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14124e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14133966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14140ac07820SSatish Balay 
1415d64ed03dSBarry Smith   PetscFunctionBegin;
1416d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141726fbe8dcSKarl Rupp 
14189566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
141926fbe8dcSKarl Rupp 
14209371c9d4SSatish Balay   isend[0] = info->nz_used;
14219371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14229371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14239371c9d4SSatish Balay   isend[3] = info->memory;
14249371c9d4SSatish Balay   isend[4] = info->mallocs;
142526fbe8dcSKarl Rupp 
14269566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
142726fbe8dcSKarl Rupp 
14289371c9d4SSatish Balay   isend[0] += info->nz_used;
14299371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14309371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14319371c9d4SSatish Balay   isend[3] += info->memory;
14329371c9d4SSatish Balay   isend[4] += info->mallocs;
143326fbe8dcSKarl Rupp 
14340ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14354e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14364e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14374e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14384e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14394e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14400ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14411c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
144226fbe8dcSKarl Rupp 
14434e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14444e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14454e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14464e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14474e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14480ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14491c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
145026fbe8dcSKarl Rupp 
14514e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14524e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14534e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14544e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14554e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
145698921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14574e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14584e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14594e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14610ac07820SSatish Balay }
14620ac07820SSatish Balay 
146366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1464d71ae5a4SJacob Faibussowitsch {
146558667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
146658667388SSatish Balay 
1467d64ed03dSBarry Smith   PetscFunctionBegin;
146812c028f9SKris Buschelman   switch (op) {
1469512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147012c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1472a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
147312c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147443674050SBarry Smith     MatCheckPreallocated(A, 1);
14759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147712c028f9SKris Buschelman     break;
147812c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
147943674050SBarry Smith     MatCheckPreallocated(A, 1);
14804e0d8c25SBarry Smith     a->roworiented = flg;
148126fbe8dcSKarl Rupp 
14829566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14839566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148412c028f9SKris Buschelman     break;
14858c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1486d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1487d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1488d71ae5a4SJacob Faibussowitsch     break;
1489d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1490d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1491d71ae5a4SJacob Faibussowitsch     break;
149212c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14934e0d8c25SBarry Smith     a->ht_flag = flg;
1494abf3b562SBarry Smith     a->ht_fact = 1.39;
149512c028f9SKris Buschelman     break;
149677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
149777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14982188ac68SBarry Smith   case MAT_HERMITIAN:
1499c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15002188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1501b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1502b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1503b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
150477e54ba9SKris Buschelman     break;
1505d71ae5a4SJacob Faibussowitsch   default:
1506d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1507d64ed03dSBarry Smith   }
15083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
150958667388SSatish Balay }
151058667388SSatish Balay 
151166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1512d71ae5a4SJacob Faibussowitsch {
15130ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15140ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15150ac07820SSatish Balay   Mat          B;
1516d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1517d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15183eda8832SBarry Smith   MatScalar   *a;
15190ac07820SSatish Balay 
1520d64ed03dSBarry Smith   PetscFunctionBegin;
15217fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1522cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15249566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15259566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15262e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15279566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1528fc4dec0aSBarry Smith   } else {
1529fc4dec0aSBarry Smith     B = *matout;
1530fc4dec0aSBarry Smith   }
15310ac07820SSatish Balay 
15320ac07820SSatish Balay   /* copy over the A part */
15330ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15349371c9d4SSatish Balay   ai   = Aloc->i;
15359371c9d4SSatish Balay   aj   = Aloc->j;
15369371c9d4SSatish Balay   a    = Aloc->a;
15379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15380ac07820SSatish Balay 
15390ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1540899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154126fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15420ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1543899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15440ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15459566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
154626fbe8dcSKarl Rupp 
15479371c9d4SSatish Balay         col++;
15489371c9d4SSatish Balay         a += bs;
15490ac07820SSatish Balay       }
15500ac07820SSatish Balay     }
15510ac07820SSatish Balay   }
15520ac07820SSatish Balay   /* copy over the B part */
15530ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15549371c9d4SSatish Balay   ai   = Aloc->i;
15559371c9d4SSatish Balay   aj   = Aloc->j;
15569371c9d4SSatish Balay   a    = Aloc->a;
15570ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1558899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
155926fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15600ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15610ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15620ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15639566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
156426fbe8dcSKarl Rupp         col++;
156526fbe8dcSKarl Rupp         a += bs;
15660ac07820SSatish Balay       }
15670ac07820SSatish Balay     }
15680ac07820SSatish Balay   }
15699566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15720ac07820SSatish Balay 
1573cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
157448a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15760ac07820SSatish Balay }
15770e95ebc0SSatish Balay 
157866976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1579d71ae5a4SJacob Faibussowitsch {
158036c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
158136c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1582b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15830e95ebc0SSatish Balay 
1584d64ed03dSBarry Smith   PetscFunctionBegin;
15859566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
158636c4a09eSSatish Balay   if (rr) {
15879566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15885f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
158936c4a09eSSatish Balay     /* Overlap communication with computation. */
15909566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
159136c4a09eSSatish Balay   }
15920e95ebc0SSatish Balay   if (ll) {
15939566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15945f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1595dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15960e95ebc0SSatish Balay   }
159736c4a09eSSatish Balay   /* scale  the diagonal block */
1598dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
159936c4a09eSSatish Balay 
160036c4a09eSSatish Balay   if (rr) {
160136c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
16029566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1603dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
160436c4a09eSSatish Balay   }
16053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16060e95ebc0SSatish Balay }
16070e95ebc0SSatish Balay 
160866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1609d71ae5a4SJacob Faibussowitsch {
16100ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
161165a92638SMatthew G. Knepley   PetscInt    *lrows;
16126e520ac8SStefano Zampini   PetscInt     r, len;
161394342113SStefano Zampini   PetscBool    cong;
16140ac07820SSatish Balay 
1615d64ed03dSBarry Smith   PetscFunctionBegin;
16166e520ac8SStefano Zampini   /* get locally owned rows */
16179566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
161897b48c8fSBarry Smith   /* fix right hand side if needed */
161997b48c8fSBarry Smith   if (x && b) {
162065a92638SMatthew G. Knepley     const PetscScalar *xx;
162165a92638SMatthew G. Knepley     PetscScalar       *bb;
162265a92638SMatthew G. Knepley 
16239566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16249566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
162565a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16269566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16279566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
162897b48c8fSBarry Smith   }
162997b48c8fSBarry Smith 
16300ac07820SSatish Balay   /* actually zap the local rows */
163172dacd9aSBarry Smith   /*
163272dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1633a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
163472dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
163572dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
163672dacd9aSBarry Smith 
163772dacd9aSBarry Smith   */
16389c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16399566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16409566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
164194342113SStefano Zampini   if ((diag != 0.0) && cong) {
16429566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1643f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16449566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
16455f80ce2aSJacob Faibussowitsch     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1646512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
164765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
164865a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16499566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1650a07cd24cSSatish Balay     }
16519566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16529566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16539c957beeSSatish Balay   } else {
16549566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1655a07cd24cSSatish Balay   }
16569566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16574f9cfa9eSBarry Smith 
16584f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16599939a2d1SBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern || !((Mat_SeqBAIJ *)(l->A->data))->nonew) {
1660e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16611c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1662e56f5c9eSBarry Smith   }
16633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16640ac07820SSatish Balay }
166572dacd9aSBarry Smith 
166666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1667d71ae5a4SJacob Faibussowitsch {
16686f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1669131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1670131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16716f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16726f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16736f0a72daSMatthew G. Knepley   PetscSF            sf;
16746f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16756f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16766f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16776f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16786f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16796f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16806f0a72daSMatthew G. Knepley 
16816f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16826f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16846f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16866f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16876f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16885f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16895ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16909566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16915ba17502SJed Brown     }
16926f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16936f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16946f0a72daSMatthew G. Knepley   }
16959566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16969566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16976f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16989566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16999566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17009566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
17016f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17029371c9d4SSatish Balay   for (r = 0; r < n; ++r)
17039371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
17046f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17059566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
17064cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
17079566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17089566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17099566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17106f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17129566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17139566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17156f0a72daSMatthew G. Knepley   if (x) {
17169566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17179566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17189566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17199566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17206f0a72daSMatthew G. Knepley   }
17219566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17224cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17236f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17246f0a72daSMatthew G. Knepley     row   = lrows[i];
17256f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
17266f0a72daSMatthew G. Knepley     aa    = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs);
17276f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17286f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17296f0a72daSMatthew G. Knepley       aa += bs;
17306f0a72daSMatthew G. Knepley     }
17316f0a72daSMatthew G. Knepley   }
17326f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17336f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17346f0a72daSMatthew G. Knepley     row = i / bs;
17356f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17366f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17376f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17386f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17396f0a72daSMatthew G. Knepley           aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k;
174089ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17416f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17426f0a72daSMatthew G. Knepley         }
17436f0a72daSMatthew G. Knepley       }
17446f0a72daSMatthew G. Knepley     }
17456f0a72daSMatthew G. Knepley   }
17466f0a72daSMatthew G. Knepley   if (x) {
17479566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17496f0a72daSMatthew G. Knepley   }
17509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17529566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17534f9cfa9eSBarry Smith 
17544f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17559939a2d1SBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->nonew) {
17564f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17571c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17584f9cfa9eSBarry Smith   }
17593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17606f0a72daSMatthew G. Knepley }
17616f0a72daSMatthew G. Knepley 
176266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1763d71ae5a4SJacob Faibussowitsch {
1764bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1765d64ed03dSBarry Smith 
1766d64ed03dSBarry Smith   PetscFunctionBegin;
17679566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1769bb5a7306SBarry Smith }
1770bb5a7306SBarry Smith 
17716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17720ac07820SSatish Balay 
177366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1774d71ae5a4SJacob Faibussowitsch {
17757fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17767fc3c18eSBarry Smith   Mat          a, b, c, d;
1777ace3abfcSBarry Smith   PetscBool    flg;
17787fc3c18eSBarry Smith 
17797fc3c18eSBarry Smith   PetscFunctionBegin;
17809371c9d4SSatish Balay   a = matA->A;
17819371c9d4SSatish Balay   b = matA->B;
17829371c9d4SSatish Balay   c = matB->A;
17839371c9d4SSatish Balay   d = matB->B;
17847fc3c18eSBarry Smith 
17859566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
178648a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17871c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17897fc3c18eSBarry Smith }
17907fc3c18eSBarry Smith 
179166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1792d71ae5a4SJacob Faibussowitsch {
17933c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17943c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17953c896bc6SHong Zhang 
17963c896bc6SHong Zhang   PetscFunctionBegin;
17973c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17983c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17999566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
18003c896bc6SHong Zhang   } else {
18019566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
18029566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
18033c896bc6SHong Zhang   }
18049566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
18053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18063c896bc6SHong Zhang }
1807273d9f13SBarry Smith 
1808d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1809d71ae5a4SJacob Faibussowitsch {
1810001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18114de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18124de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18134de5dceeSHong Zhang 
18144de5dceeSHong Zhang   PetscFunctionBegin;
18159566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18174de5dceeSHong Zhang }
18184de5dceeSHong Zhang 
181966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1820d71ae5a4SJacob Faibussowitsch {
18214fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18224fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18234fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1824b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18254fe895cdSHong Zhang 
18264fe895cdSHong Zhang   PetscFunctionBegin;
18274fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18284fe895cdSHong Zhang     PetscScalar alpha = a;
18294fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18304fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18319566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1832792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18334fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18344fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18359566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1836792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18379566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1838ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18399566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18404fe895cdSHong Zhang   } else {
18414de5dceeSHong Zhang     Mat       B;
18424de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18459566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18469566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18479566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18489566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18499566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18509566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18519566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18529566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18534de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18549566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18559566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18569566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18579566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18584fe895cdSHong Zhang   }
18593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18604fe895cdSHong Zhang }
18614fe895cdSHong Zhang 
186266976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1863d71ae5a4SJacob Faibussowitsch {
18645f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18655f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18662726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18672726fb6dSPierre Jolivet 
18689566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18699566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18705f80ce2aSJacob Faibussowitsch   }
18713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18722726fb6dSPierre Jolivet }
18732726fb6dSPierre Jolivet 
187466976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1875d71ae5a4SJacob Faibussowitsch {
187699cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187799cafbc1SBarry Smith 
187899cafbc1SBarry Smith   PetscFunctionBegin;
18799566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18809566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188299cafbc1SBarry Smith }
188399cafbc1SBarry Smith 
188466976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1885d71ae5a4SJacob Faibussowitsch {
188699cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188799cafbc1SBarry Smith 
188899cafbc1SBarry Smith   PetscFunctionBegin;
18899566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18909566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189299cafbc1SBarry Smith }
189399cafbc1SBarry Smith 
189466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1895d71ae5a4SJacob Faibussowitsch {
18964aa3045dSJed Brown   IS       iscol_local;
18974aa3045dSJed Brown   PetscInt csize;
18984aa3045dSJed Brown 
18994aa3045dSJed Brown   PetscFunctionBegin;
19009566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1901b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
19029566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
19035f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1904b79d0421SJed Brown   } else {
19059566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1906b79d0421SJed Brown   }
1907fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1908b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19099566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19109566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1911b79d0421SJed Brown   }
19123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19134aa3045dSJed Brown }
191417df9f7cSHong Zhang 
191582094794SBarry Smith /*
191682094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
191782094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19187dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19198f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
192082094794SBarry Smith */
1921fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1922d71ae5a4SJacob Faibussowitsch {
192382094794SBarry Smith   PetscMPIInt  rank, size;
192482094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1925c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
192629dcf524SDmitry Karpeev   Mat          M, Mreuse;
192782094794SBarry Smith   MatScalar   *vwork, *aa;
1928ce94432eSBarry Smith   MPI_Comm     comm;
192929dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
193082094794SBarry Smith   Mat_SeqBAIJ *aij;
193182094794SBarry Smith 
193282094794SBarry Smith   PetscFunctionBegin;
19339566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
193629dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
193729dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19389566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1939864bd19bSPierre Jolivet   if (isrow == iscol) {
1940864bd19bSPierre Jolivet     iscol_new = isrow_new;
1941864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1942864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
194382094794SBarry Smith 
194482094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19459566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19465f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1947fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
194882094794SBarry Smith   } else {
1949fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
195082094794SBarry Smith   }
19519566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
195382094794SBarry Smith   /*
195482094794SBarry Smith       m - number of local rows
195582094794SBarry Smith       n - number of columns (same on all processors)
195682094794SBarry Smith       rstart - first row in new global matrix generated
195782094794SBarry Smith   */
19589566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19599566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
196082094794SBarry Smith   m = m / bs;
196182094794SBarry Smith   n = n / bs;
196282094794SBarry Smith 
196382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
196482094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
196582094794SBarry Smith     ii  = aij->i;
196682094794SBarry Smith     jj  = aij->j;
196782094794SBarry Smith 
196882094794SBarry Smith     /*
196982094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
197082094794SBarry Smith         portions of the matrix in order to do correct preallocation
197182094794SBarry Smith     */
197282094794SBarry Smith 
197382094794SBarry Smith     /* first get start and end of "diagonal" columns */
197482094794SBarry Smith     if (csize == PETSC_DECIDE) {
19759566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
197682094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
197782094794SBarry Smith         nlocal = m;
197882094794SBarry Smith       } else {
197982094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
198082094794SBarry Smith       }
198182094794SBarry Smith     } else {
198282094794SBarry Smith       nlocal = csize / bs;
198382094794SBarry Smith     }
19849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
198582094794SBarry Smith     rstart = rend - nlocal;
1986aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
198782094794SBarry Smith 
198882094794SBarry Smith     /* next, compute all the lengths */
19899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
199082094794SBarry Smith     for (i = 0; i < m; i++) {
199182094794SBarry Smith       jend = ii[i + 1] - ii[i];
199282094794SBarry Smith       olen = 0;
199382094794SBarry Smith       dlen = 0;
199482094794SBarry Smith       for (j = 0; j < jend; j++) {
199582094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
199682094794SBarry Smith         else dlen++;
199782094794SBarry Smith         jj++;
199882094794SBarry Smith       }
199982094794SBarry Smith       olens[i] = olen;
200082094794SBarry Smith       dlens[i] = dlen;
200182094794SBarry Smith     }
20029566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
20039566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
2004fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
20059566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20069566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20079566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
200882094794SBarry Smith   } else {
200982094794SBarry Smith     PetscInt ml, nl;
201082094794SBarry Smith 
201182094794SBarry Smith     M = *newmat;
20129566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20135f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20149566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
201582094794SBarry Smith     /*
201682094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
201782094794SBarry Smith        rather than the slower MatSetValues().
201882094794SBarry Smith     */
201982094794SBarry Smith     M->was_assembled = PETSC_TRUE;
202082094794SBarry Smith     M->assembled     = PETSC_FALSE;
202182094794SBarry Smith   }
20229566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20239566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
202482094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
202582094794SBarry Smith   ii  = aij->i;
202682094794SBarry Smith   jj  = aij->j;
202782094794SBarry Smith   aa  = aij->a;
202882094794SBarry Smith   for (i = 0; i < m; i++) {
202982094794SBarry Smith     row   = rstart / bs + i;
203082094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20319371c9d4SSatish Balay     cwork = jj;
20328e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20339371c9d4SSatish Balay     vwork = aa;
20348e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20359566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
203682094794SBarry Smith   }
203782094794SBarry Smith 
20389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
204082094794SBarry Smith   *newmat = M;
204182094794SBarry Smith 
204282094794SBarry Smith   /* save submatrix used in processor for next request */
204382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20449566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20459566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
204682094794SBarry Smith   }
20473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
204882094794SBarry Smith }
204982094794SBarry Smith 
205066976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2051d71ae5a4SJacob Faibussowitsch {
205282094794SBarry Smith   MPI_Comm        comm, pcomm;
2053a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
205482094794SBarry Smith   const PetscInt *rows;
2055dbf0e21dSBarry Smith   PetscMPIInt     size;
2056a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
205782094794SBarry Smith 
205882094794SBarry Smith   PetscFunctionBegin;
20599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
206082094794SBarry Smith   /* make a collective version of 'rowp' */
20619566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
206282094794SBarry Smith   if (pcomm == comm) {
206382094794SBarry Smith     crowp = rowp;
206482094794SBarry Smith   } else {
20659566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20669566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20679566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20689566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
206982094794SBarry Smith   }
20709566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2071a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2074dbf0e21dSBarry Smith   if (size == 1) {
207582094794SBarry Smith     lcolp = colp;
207682094794SBarry Smith   } else {
20779566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
207882094794SBarry Smith   }
20799566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
208075f6568bSJed Brown   /* now we just get the submatrix */
20819566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2082fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2083a0a83eb5SRémi Lacroix   /* clean up */
208448a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
208548a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208782094794SBarry Smith }
208882094794SBarry Smith 
208966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2090d71ae5a4SJacob Faibussowitsch {
20918c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20928c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20938c7482ecSBarry Smith 
20948c7482ecSBarry Smith   PetscFunctionBegin;
209526fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
209626fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20988c7482ecSBarry Smith }
20998c7482ecSBarry Smith 
210066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2101d71ae5a4SJacob Faibussowitsch {
2102f6d58c54SBarry Smith   Mat          B;
2103f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2104f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2105f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2106f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2107f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2108f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2109f6d58c54SBarry Smith 
2110f6d58c54SBarry Smith   PetscFunctionBegin;
21119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2113f6d58c54SBarry Smith 
21142ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2116ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2118f6d58c54SBarry Smith   displs = recvcounts + size;
2119f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2120f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2121f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2122f6d58c54SBarry Smith   }
21239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21242ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21259566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21269566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21279566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21289566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2129f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2130f6d58c54SBarry Smith 
21312ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2132f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2133f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2134f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2135f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2136f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2137f6d58c54SBarry Smith   cnt        = 0;
2138f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2139f6d58c54SBarry Smith     /* put in lower diagonal portion */
2140f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2141f6d58c54SBarry Smith     while (m > 0) {
2142f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2143f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2144f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2145f6d58c54SBarry Smith       m--;
2146f6d58c54SBarry Smith     }
2147f6d58c54SBarry Smith 
2148f6d58c54SBarry Smith     /* put in diagonal portion */
2149ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2150f6d58c54SBarry Smith 
2151f6d58c54SBarry Smith     /* put in upper diagonal portion */
2152ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2153f6d58c54SBarry Smith   }
21545f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2155f6d58c54SBarry Smith 
21562ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2157f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2158f6d58c54SBarry Smith     recvcounts[i] = 0;
2159ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2160f6d58c54SBarry Smith   }
2161f6d58c54SBarry Smith   displs[0] = 0;
2162ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21645804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2165f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21669566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2167f6d58c54SBarry Smith   /* set the b->i indices */
2168f6d58c54SBarry Smith   b->i[0] = 0;
2169ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21709566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21739566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2174f6d58c54SBarry Smith 
2175b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2176f6d58c54SBarry Smith   *newmat = B;
21773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2178f6d58c54SBarry Smith }
2179f6d58c54SBarry Smith 
218066976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2181d71ae5a4SJacob Faibussowitsch {
2182b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2183f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2184b1a666ecSBarry Smith 
2185b1a666ecSBarry Smith   PetscFunctionBegin;
2186b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21879566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21883ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2189b1a666ecSBarry Smith   }
2190b1a666ecSBarry Smith 
219148a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21924e980039SJed Brown 
2193b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2194b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21959566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2196b1a666ecSBarry Smith       its--;
2197b1a666ecSBarry Smith     }
2198b1a666ecSBarry Smith 
2199b1a666ecSBarry Smith     while (its--) {
22009566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22019566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2202b1a666ecSBarry Smith 
2203b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22049566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22059566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2206b1a666ecSBarry Smith 
2207b1a666ecSBarry Smith       /* local sweep */
22089566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2209b1a666ecSBarry Smith     }
2210b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2211b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22129566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2213b1a666ecSBarry Smith       its--;
2214b1a666ecSBarry Smith     }
2215b1a666ecSBarry Smith     while (its--) {
22169566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22179566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2218b1a666ecSBarry Smith 
2219b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22209566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22219566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2222b1a666ecSBarry Smith 
2223b1a666ecSBarry Smith       /* local sweep */
22249566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2225b1a666ecSBarry Smith     }
2226b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2227b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2229b1a666ecSBarry Smith       its--;
2230b1a666ecSBarry Smith     }
2231b1a666ecSBarry Smith     while (its--) {
22329566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22339566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2234b1a666ecSBarry Smith 
2235b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22369566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22379566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2238b1a666ecSBarry Smith 
2239b1a666ecSBarry Smith       /* local sweep */
22409566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2241b1a666ecSBarry Smith     }
2242ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2243b1a666ecSBarry Smith 
22449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2246b1a666ecSBarry Smith }
2247b1a666ecSBarry Smith 
224866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2249d71ae5a4SJacob Faibussowitsch {
225047f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2251a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
225247f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
225347f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
225447f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
225547f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
225647f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
225747f7623dSRémi Lacroix   PetscReal   *work;
225847f7623dSRémi Lacroix 
225947f7623dSRémi Lacroix   PetscFunctionBegin;
22609566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22619566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2262857cbf51SRichard Tran Mills   if (type == NORM_2) {
226347f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
226447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
226747f7623dSRémi Lacroix           a_val++;
226847f7623dSRémi Lacroix         }
226947f7623dSRémi Lacroix       }
227047f7623dSRémi Lacroix     }
227147f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
227247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
227547f7623dSRémi Lacroix           b_val++;
227647f7623dSRémi Lacroix         }
227747f7623dSRémi Lacroix       }
227847f7623dSRémi Lacroix     }
2279857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
228047f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228347f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
228447f7623dSRémi Lacroix           a_val++;
228547f7623dSRémi Lacroix         }
228647f7623dSRémi Lacroix       }
228747f7623dSRémi Lacroix     }
228847f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
228947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229147f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
229247f7623dSRémi Lacroix           b_val++;
229347f7623dSRémi Lacroix         }
229447f7623dSRémi Lacroix       }
229547f7623dSRémi Lacroix     }
2296857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
229747f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
229847f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229947f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230047f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
230147f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
230247f7623dSRémi Lacroix           a_val++;
230347f7623dSRémi Lacroix         }
230447f7623dSRémi Lacroix       }
230547f7623dSRémi Lacroix     }
230647f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
230747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230947f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
231047f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
231147f7623dSRémi Lacroix           b_val++;
231247f7623dSRémi Lacroix         }
231347f7623dSRémi Lacroix       }
231447f7623dSRémi Lacroix     }
2315857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2316a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2317a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2318a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2319857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2320a873a8cdSSam Reynolds           a_val++;
2321a873a8cdSSam Reynolds         }
2322a873a8cdSSam Reynolds       }
2323a873a8cdSSam Reynolds     }
2324a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2325a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2326a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2327857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2328a873a8cdSSam Reynolds           b_val++;
2329a873a8cdSSam Reynolds         }
2330a873a8cdSSam Reynolds       }
2331a873a8cdSSam Reynolds     }
2332857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2333857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2334857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2335857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2336857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2337857cbf51SRichard Tran Mills           a_val++;
2338857cbf51SRichard Tran Mills         }
2339857cbf51SRichard Tran Mills       }
2340857cbf51SRichard Tran Mills     }
2341857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2342857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2343857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2344857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2345857cbf51SRichard Tran Mills           b_val++;
2346857cbf51SRichard Tran Mills         }
2347857cbf51SRichard Tran Mills       }
2348857cbf51SRichard Tran Mills     }
2349857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2350857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23511c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
235247f7623dSRémi Lacroix   } else {
23531c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
235447f7623dSRémi Lacroix   }
23559566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2356857cbf51SRichard Tran Mills   if (type == NORM_2) {
2357a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2358857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2359a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
236047f7623dSRémi Lacroix   }
23613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
236247f7623dSRémi Lacroix }
236347f7623dSRémi Lacroix 
236466976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2365d71ae5a4SJacob Faibussowitsch {
2366bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2367bbead8a2SBarry Smith 
2368bbead8a2SBarry Smith   PetscFunctionBegin;
23699566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23707b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23717b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23727b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2374bbead8a2SBarry Smith }
2375bbead8a2SBarry Smith 
237666976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2377d71ae5a4SJacob Faibussowitsch {
23787d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23796f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23807d68702bSBarry Smith 
23817d68702bSBarry Smith   PetscFunctionBegin;
23826f33a894SBarry Smith   if (!Y->preallocated) {
23839566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23846f33a894SBarry Smith   } else if (!aij->nz) {
2385b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23869566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2387b83222d8SBarry Smith     aij->nonew = nonew;
23887d68702bSBarry Smith   }
23899566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23917d68702bSBarry Smith }
23928c7482ecSBarry Smith 
239366976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2394d71ae5a4SJacob Faibussowitsch {
23953b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23963b49f96aSBarry Smith 
23973b49f96aSBarry Smith   PetscFunctionBegin;
23985f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
23999566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
24003b49f96aSBarry Smith   if (d) {
24013b49f96aSBarry Smith     PetscInt rstart;
24029566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
24033b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
24043b49f96aSBarry Smith   }
24053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24063b49f96aSBarry Smith }
24073b49f96aSBarry Smith 
240866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2409d71ae5a4SJacob Faibussowitsch {
2410a5b7ff6bSBarry Smith   PetscFunctionBegin;
2411a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2413a5b7ff6bSBarry Smith }
2414a5b7ff6bSBarry Smith 
241517ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
241617ea310bSPierre Jolivet {
241717ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
241817ea310bSPierre Jolivet 
241917ea310bSPierre Jolivet   PetscFunctionBegin;
242017ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
242117ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
242217ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
242317ea310bSPierre Jolivet }
242417ea310bSPierre Jolivet 
24253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2426cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2427cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2428cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
242997304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24307c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24317c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2432f4259b30SLisandro Dalcin                                        NULL,
2433f4259b30SLisandro Dalcin                                        NULL,
2434f4259b30SLisandro Dalcin                                        NULL,
2435f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2436f4259b30SLisandro Dalcin                                        NULL,
2437f4259b30SLisandro Dalcin                                        NULL,
2438b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2439cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
244097304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24417fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2442cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2443cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2444cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
244597304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2446cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2448cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2449d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2450f4259b30SLisandro Dalcin                                        NULL,
2451f4259b30SLisandro Dalcin                                        NULL,
2452f4259b30SLisandro Dalcin                                        NULL,
2453f4259b30SLisandro Dalcin                                        NULL,
245426cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
2457a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2458f4259b30SLisandro Dalcin                                        NULL,
2459d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2460f4259b30SLisandro Dalcin                                        NULL,
2461f4259b30SLisandro Dalcin                                        NULL,
2462f4259b30SLisandro Dalcin                                        NULL,
2463f4259b30SLisandro Dalcin                                        NULL,
2464d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24657dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2466cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2467cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24683c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2469f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2470cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24717d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2472f4259b30SLisandro Dalcin                                        NULL,
24736f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2474f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2475f4259b30SLisandro Dalcin                                        NULL,
2476f4259b30SLisandro Dalcin                                        NULL,
2477f4259b30SLisandro Dalcin                                        NULL,
2478f4259b30SLisandro Dalcin                                        NULL,
247993dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2480f4259b30SLisandro Dalcin                                        NULL,
2481cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
248282094794SBarry Smith                                        MatPermute_MPIBAIJ,
2483cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24847dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2485f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2486f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2487f4259b30SLisandro Dalcin                                        NULL,
2488f4259b30SLisandro Dalcin                                        NULL,
2489f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2500f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
25085bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2509f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
25272726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        /*104*/ NULL,
253099cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25318c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2532f4259b30SLisandro Dalcin                                        NULL,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        NULL,
25383b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2539d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2540f4259b30SLisandro Dalcin                                        NULL,
25414683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2542f4259b30SLisandro Dalcin                                        NULL,
2543f4259b30SLisandro Dalcin                                        NULL,
2544f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2545f4259b30SLisandro Dalcin                                        NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        NULL,
2548e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2549f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2550a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25513964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2552f4259b30SLisandro Dalcin                                        NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2555f4259b30SLisandro Dalcin                                        NULL,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        NULL,
2558f4259b30SLisandro Dalcin                                        NULL,
2559f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562f4259b30SLisandro Dalcin                                        NULL,
2563f4259b30SLisandro Dalcin                                        NULL,
256446533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
2567bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2568f4259b30SLisandro Dalcin                                        NULL,
2569d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2570d70f29a3SPierre Jolivet                                        NULL,
2571d70f29a3SPierre Jolivet                                        NULL,
257299a7f59eSMark Adams                                        NULL,
257399a7f59eSMark Adams                                        NULL,
25747fb60732SBarry Smith                                        NULL,
2575dec0b466SHong Zhang                                        /*150*/ NULL,
2576eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
2577eede4a3fSMark Adams                                        NULL};
257879bdfe76SSatish Balay 
2579cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2580c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2581d94109b8SHong Zhang 
258266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2583d71ae5a4SJacob Faibussowitsch {
2584b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2585f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2586f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2587f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2588d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25893bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2590aac34f13SBarry Smith 
2591aac34f13SBarry Smith   PetscFunctionBegin;
25929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2597d0f46423SBarry Smith   m      = B->rmap->n / bs;
2598d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2599d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2600d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2601b8d659d7SLisandro Dalcin 
26025f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
26039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2604aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2605cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26065f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2607b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
260837cd3c0dSBarry Smith     dlen   = 0;
260937cd3c0dSBarry Smith     olen   = 0;
2610cf12db73SBarry Smith     JJ     = jj + ii[i];
2611b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
261237cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
261337cd3c0dSBarry Smith       else dlen++;
2614aac34f13SBarry Smith       JJ++;
2615aac34f13SBarry Smith     }
261637cd3c0dSBarry Smith     d_nnz[i] = dlen;
261737cd3c0dSBarry Smith     o_nnz[i] = olen;
2618aac34f13SBarry Smith   }
26199566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26209566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2621aac34f13SBarry Smith 
2622b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
262348a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2624b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2625b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2626cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2627cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2628bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2629cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26309566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26313adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26323adadaf3SJed Brown       PetscInt j;
26333adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26343adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26359566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26363adadaf3SJed Brown       }
26373adadaf3SJed Brown     }
2638aac34f13SBarry Smith   }
2639aac34f13SBarry Smith 
26409566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26413bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26423bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26453bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26463bd0feecSPierre Jolivet 
26479566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2649aac34f13SBarry Smith }
2650aac34f13SBarry Smith 
2651aac34f13SBarry Smith /*@C
265211a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2653aac34f13SBarry Smith 
2654d083f849SBarry Smith   Collective
2655aac34f13SBarry Smith 
2656aac34f13SBarry Smith   Input Parameters:
26571c4f3114SJed Brown + B  - the matrix
2658dfb205c3SBarry Smith . bs - the block size
265920f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2660aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2661*d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2662aac34f13SBarry Smith 
2663664954b6SBarry Smith   Level: advanced
2664aac34f13SBarry Smith 
266595452b02SPatrick Sanan   Notes:
2666*d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2667*d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2668*d8a51d2aSBarry Smith   called this routine.
2669*d8a51d2aSBarry Smith 
267011a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
267111a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26723adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
267311a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26743adadaf3SJed Brown   block column and the second index is over columns within a block.
26753adadaf3SJed Brown 
2676664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2677664954b6SBarry Smith 
26787d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2679aac34f13SBarry Smith @*/
2680d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2681d71ae5a4SJacob Faibussowitsch {
2682aac34f13SBarry Smith   PetscFunctionBegin;
26836ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26846ba663aaSJed Brown   PetscValidType(B, 1);
26856ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2686cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2688aac34f13SBarry Smith }
2689aac34f13SBarry Smith 
2690d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2691d71ae5a4SJacob Faibussowitsch {
2692ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2693535b19f3SBarry Smith   PetscInt     i;
26945d2a9ed1SStefano Zampini   PetscMPIInt  size;
2695a23d5eceSKris Buschelman 
2696a23d5eceSKris Buschelman   PetscFunctionBegin;
2697ad79cf63SBarry Smith   if (B->hash_active) {
2698aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2699ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2700ad79cf63SBarry Smith   }
2701ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
27029566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
27039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2706899cda47SBarry Smith 
2707a23d5eceSKris Buschelman   if (d_nnz) {
2708ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2709a23d5eceSKris Buschelman   }
2710a23d5eceSKris Buschelman   if (o_nnz) {
2711ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2712a23d5eceSKris Buschelman   }
2713a23d5eceSKris Buschelman 
2714a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2715d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2716d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2717d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2718d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2719a23d5eceSKris Buschelman 
2720ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2721d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2722d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2723d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2724d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2725a23d5eceSKris Buschelman 
2726cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2727eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2728cb7b82ddSBarry Smith #else
27299566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2730cb7b82ddSBarry Smith #endif
27319566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27329566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27339566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2734cb7b82ddSBarry Smith 
27359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2736c508b908SBarry Smith 
2737c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27389566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27399566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27409566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27419566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2742c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2743cb7b82ddSBarry Smith 
2744c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2745ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27469566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27479566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27489566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2749c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2750a23d5eceSKris Buschelman 
27519566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27529566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2753526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2754cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2755cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2757a23d5eceSKris Buschelman }
2758a23d5eceSKris Buschelman 
27597087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27607087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27615bf65638SKris Buschelman 
2762d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2763d71ae5a4SJacob Faibussowitsch {
276482094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
276582094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
276682094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
276782094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
276882094794SBarry Smith 
276982094794SBarry Smith   PetscFunctionBegin;
27709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
277182094794SBarry Smith   ii[0] = 0;
277282094794SBarry Smith   for (i = 0; i < M; i++) {
277308401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
277408401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
277582094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27765ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27775ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27789371c9d4SSatish Balay       if (jd[j] == i) {
27799371c9d4SSatish Balay         ii[i + 1]--;
27809371c9d4SSatish Balay         break;
27819371c9d4SSatish Balay       }
27825ee9ba1cSJed Brown     }
278382094794SBarry Smith   }
27849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
278582094794SBarry Smith   cnt = 0;
278682094794SBarry Smith   for (i = 0; i < M; i++) {
278782094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
278882094794SBarry Smith       if (garray[jo[j]] > rstart) break;
278982094794SBarry Smith       jj[cnt++] = garray[jo[j]];
279082094794SBarry Smith     }
279182094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2792ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
279382094794SBarry Smith     }
2794ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
279582094794SBarry Smith   }
27969566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279882094794SBarry Smith }
279982094794SBarry Smith 
2800c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
280162471d69SBarry Smith 
2802cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2803b2573a8aSBarry Smith 
2804d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2805d71ae5a4SJacob Faibussowitsch {
280662471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
280785a69837SSatish Balay   Mat_MPIAIJ  *b;
28085f80ce2aSJacob Faibussowitsch   Mat          B;
280962471d69SBarry Smith 
281062471d69SBarry Smith   PetscFunctionBegin;
28115f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
281262471d69SBarry Smith 
28130f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28140f6d62edSLisandro Dalcin     B = *newmat;
28150f6d62edSLisandro Dalcin   } else {
28169566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28179566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28189566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28199566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28219566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28220f6d62edSLisandro Dalcin   }
282362471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
282462471d69SBarry Smith 
28250f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28269566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28279566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28280f6d62edSLisandro Dalcin   } else {
28297c612885SStefano Zampini     PetscInt   *garray = a->garray;
28307c612885SStefano Zampini     Mat_SeqAIJ *bB;
28317c612885SStefano Zampini     PetscInt    bs, nnz;
28329566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28339566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28347c612885SStefano Zampini     /* just clear out the data structure */
28357c612885SStefano Zampini     PetscCall(MatDisAssemble_MPIAIJ(B));
28369566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28379566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28387c612885SStefano Zampini 
28397c612885SStefano Zampini     /* Global numbering for b->B columns */
28407c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28417c612885SStefano Zampini     bs  = A->rmap->bs;
28427c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28437c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28447c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28457c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28467c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28477c612885SStefano Zampini     }
28480f6d62edSLisandro Dalcin   }
28499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28510f6d62edSLisandro Dalcin 
2852511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28539566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
285462471d69SBarry Smith   } else {
285562471d69SBarry Smith     *newmat = B;
285662471d69SBarry Smith   }
28573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
285862471d69SBarry Smith }
285962471d69SBarry Smith 
28600bad9183SKris Buschelman /*MC
2861fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28620bad9183SKris Buschelman 
28630bad9183SKris Buschelman    Options Database Keys:
286411a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28658c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28666679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
286767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28680bad9183SKris Buschelman 
28690bad9183SKris Buschelman    Level: beginner
28700cd7f59aSBarry Smith 
287111a5261eSBarry Smith    Note:
28725e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
287311a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28740bad9183SKris Buschelman 
28755e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28760bad9183SKris Buschelman M*/
28770bad9183SKris Buschelman 
2878cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2879c0cdd4a1SDahai Guo 
2880d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2881d71ae5a4SJacob Faibussowitsch {
2882273d9f13SBarry Smith   Mat_MPIBAIJ *b;
288394ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2884273d9f13SBarry Smith 
2885273d9f13SBarry Smith   PetscFunctionBegin;
28864dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
288782502324SSatish Balay   B->data      = (void *)b;
2888aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2889273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2890273d9f13SBarry Smith 
2891273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28929566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28939566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2894273d9f13SBarry Smith 
2895273d9f13SBarry Smith   /* build local table of row and column ownerships */
28969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2897273d9f13SBarry Smith 
2898273d9f13SBarry Smith   /* build cache for off array entries formed */
28999566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
290026fbe8dcSKarl Rupp 
2901273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
29020298fd71SBarry Smith   b->colmap      = NULL;
29030298fd71SBarry Smith   b->garray      = NULL;
2904273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2905273d9f13SBarry Smith 
2906273d9f13SBarry Smith   /* stuff used in block assembly */
2907f4259b30SLisandro Dalcin   b->barray = NULL;
2908273d9f13SBarry Smith 
2909273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2910f4259b30SLisandro Dalcin   b->lvec  = NULL;
2911f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2912273d9f13SBarry Smith 
2913273d9f13SBarry Smith   /* stuff for MatGetRow() */
2914f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2915f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2916273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2917273d9f13SBarry Smith 
2918273d9f13SBarry Smith   /* hash table stuff */
2919f4259b30SLisandro Dalcin   b->ht           = NULL;
2920f4259b30SLisandro Dalcin   b->hd           = NULL;
2921273d9f13SBarry Smith   b->ht_size      = 0;
2922273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2923273d9f13SBarry Smith   b->ht_fact      = 0;
2924273d9f13SBarry Smith   b->ht_total_ct  = 0;
2925273d9f13SBarry Smith   b->ht_insert_ct = 0;
2926273d9f13SBarry Smith 
29277dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29287a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29297a868f3eSHong Zhang 
29309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29337ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29357ea3e4caSstefano_zampini #endif
29369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29439566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
294494ae4db5SBarry Smith 
2945d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29469566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
294794ae4db5SBarry Smith   if (flg) {
294894ae4db5SBarry Smith     PetscReal fact = 1.39;
29499566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29509566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
295194ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29529566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29539566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
295494ae4db5SBarry Smith   }
2955d0609cedSBarry Smith   PetscOptionsEnd();
29563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2957273d9f13SBarry Smith }
2958273d9f13SBarry Smith 
29592920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2960209238afSKris Buschelman /*MC
2961002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2962209238afSKris Buschelman 
296311a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
296411a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2965209238afSKris Buschelman 
2966209238afSKris Buschelman    Options Database Keys:
296711a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2968209238afSKris Buschelman 
2969209238afSKris Buschelman   Level: beginner
2970209238afSKris Buschelman 
297167be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2972209238afSKris Buschelman M*/
2973209238afSKris Buschelman 
2974273d9f13SBarry Smith /*@C
297511a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
297667be906fSBarry Smith   (block compressed row).
2977273d9f13SBarry Smith 
2978c3339decSBarry Smith   Collective
2979273d9f13SBarry Smith 
2980273d9f13SBarry Smith   Input Parameters:
29811c4f3114SJed Brown + B     - the matrix
298211a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
298367be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2984273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2985273d9f13SBarry Smith            submatrix  (same for all local rows)
2986273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2987273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
298867be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
298995742e49SBarry Smith            set it even if it is zero.
2990273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2991273d9f13SBarry Smith            submatrix (same for all local rows).
2992273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2993273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
299467be906fSBarry Smith            each block row) or `NULL`.
2995273d9f13SBarry Smith 
299649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2997273d9f13SBarry Smith 
2998273d9f13SBarry Smith   Options Database Keys:
29998c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
300067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
3001273d9f13SBarry Smith 
300267be906fSBarry Smith   Level: intermediate
300367be906fSBarry Smith 
3004273d9f13SBarry Smith   Notes:
300567be906fSBarry Smith   For good matrix assembly performance
300667be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
300767be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
300867be906fSBarry Smith   performance can be increased by more than a factor of 50.
300967be906fSBarry Smith 
301011a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3011273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
3012273d9f13SBarry Smith 
3013273d9f13SBarry Smith   Storage Information:
3014273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3015273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3016273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3017273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
302067be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
302167be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3022273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
302367be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3024273d9f13SBarry Smith 
3025273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3026273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3027273d9f13SBarry Smith 
3028273d9f13SBarry Smith .vb
3029273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3030a4b1a0f6SJed Brown           --------------------------
3031273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3032273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3033273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3034a4b1a0f6SJed Brown           --------------------------
3035273d9f13SBarry Smith .ve
3036273d9f13SBarry Smith 
3037273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3038273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3039273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
304011a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3041273d9f13SBarry Smith 
304267be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
304367be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3044273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
304520f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3046273d9f13SBarry Smith 
304711a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3048aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
304967be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3050aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3051aa95bbe8SBarry Smith 
305267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3053273d9f13SBarry Smith @*/
3054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3055d71ae5a4SJacob Faibussowitsch {
3056273d9f13SBarry Smith   PetscFunctionBegin;
30576ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30586ba663aaSJed Brown   PetscValidType(B, 1);
30596ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3060cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3062273d9f13SBarry Smith }
3063273d9f13SBarry Smith 
30642920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
306579bdfe76SSatish Balay /*@C
306611a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
306767be906fSBarry Smith   (block compressed row).
306879bdfe76SSatish Balay 
3069d083f849SBarry Smith   Collective
3070db81eaa0SLois Curfman McInnes 
307179bdfe76SSatish Balay   Input Parameters:
3072db81eaa0SLois Curfman McInnes + comm  - MPI communicator
307311a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
307411a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
307511a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
307692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307792e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
307811a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
307992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
308092e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
308111a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
308211a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
308347a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
308479bdfe76SSatish Balay            submatrix  (same for all local rows)
308547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
308692e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30870298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
308895742e49SBarry Smith            and set it even if it is zero.
308947a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
309079bdfe76SSatish Balay            submatrix (same for all local rows).
309147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
309292e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30930298fd71SBarry Smith            each block row) or NULL.
309479bdfe76SSatish Balay 
309579bdfe76SSatish Balay   Output Parameter:
309679bdfe76SSatish Balay . A - the matrix
309779bdfe76SSatish Balay 
3098db81eaa0SLois Curfman McInnes   Options Database Keys:
30998c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
310067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
31013ffaccefSLois Curfman McInnes 
310267be906fSBarry Smith   Level: intermediate
310367be906fSBarry Smith 
310467be906fSBarry Smith   Notes:
310577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
310677433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
310777433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
310877433607SBarry Smith 
310967be906fSBarry Smith   For good matrix assembly performance
311067be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
311167be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
311267be906fSBarry Smith   performance can be increased by more than a factor of 50.
311367be906fSBarry Smith 
311449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
311549a6f317SBarry Smith 
311647a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
311747a75d0bSBarry Smith 
311879bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
311979bdfe76SSatish Balay   (possibly both).
312079bdfe76SSatish Balay 
312111a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3122be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3123be79a94dSBarry Smith 
312479bdfe76SSatish Balay   Storage Information:
312579bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
312679bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
312779bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
312879bdfe76SSatish Balay   local matrix (a rectangular submatrix).
312979bdfe76SSatish Balay 
313079bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
313179bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
313267be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
313379bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
313467be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
313579bdfe76SSatish Balay 
313679bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
313779bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
313879bdfe76SSatish Balay 
3139db81eaa0SLois Curfman McInnes .vb
3140db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3141a4b1a0f6SJed Brown           --------------------------
3142db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3143db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3144db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3145a4b1a0f6SJed Brown           --------------------------
3146db81eaa0SLois Curfman McInnes .ve
314779bdfe76SSatish Balay 
314879bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
314979bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
315079bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
315111a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
315279bdfe76SSatish Balay 
315367be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
315467be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
315579bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
315620f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
315779bdfe76SSatish Balay 
315842747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
315979bdfe76SSatish Balay @*/
3160d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3161d71ae5a4SJacob Faibussowitsch {
3162b24ad042SBarry Smith   PetscMPIInt size;
316379bdfe76SSatish Balay 
3164d64ed03dSBarry Smith   PetscFunctionBegin;
31659566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31669566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3168273d9f13SBarry Smith   if (size > 1) {
31699566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31709566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3171273d9f13SBarry Smith   } else {
31729566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31739566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31743914022bSBarry Smith   }
31753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
317679bdfe76SSatish Balay }
3177026e39d0SSatish Balay 
3178d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3179d71ae5a4SJacob Faibussowitsch {
31800ac07820SSatish Balay   Mat          mat;
31810ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3182b24ad042SBarry Smith   PetscInt     len = 0;
31830ac07820SSatish Balay 
3184d64ed03dSBarry Smith   PetscFunctionBegin;
3185f4259b30SLisandro Dalcin   *newmat = NULL;
31869566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31879566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31889566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31897fff6886SHong Zhang 
3190420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3191420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3192420957c1SBarry Smith   if (matin->hash_active) {
3193420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3194420957c1SBarry Smith   } else {
3195d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3196273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
31970ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
31987fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
31997fff6886SHong Zhang 
3200273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3201d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
32020ac07820SSatish Balay     a->bs2        = oldmat->bs2;
32030ac07820SSatish Balay     a->mbs        = oldmat->mbs;
32040ac07820SSatish Balay     a->nbs        = oldmat->nbs;
32050ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
32060ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
32070ac07820SSatish Balay 
32080ac07820SSatish Balay     a->size         = oldmat->size;
32090ac07820SSatish Balay     a->rank         = oldmat->rank;
3210aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3211aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3212f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3213f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
32140ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3215f4259b30SLisandro Dalcin     a->barray       = NULL;
3216899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3217899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3218899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3219899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32200ac07820SSatish Balay 
3221133cdb44SSatish Balay     /* hash table stuff */
3222f4259b30SLisandro Dalcin     a->ht           = NULL;
3223f4259b30SLisandro Dalcin     a->hd           = NULL;
3224133cdb44SSatish Balay     a->ht_size      = 0;
3225133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
322625fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3227133cdb44SSatish Balay     a->ht_total_ct  = 0;
3228133cdb44SSatish Balay     a->ht_insert_ct = 0;
3229133cdb44SSatish Balay 
32309566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32310ac07820SSatish Balay     if (oldmat->colmap) {
3232aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3233eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
323448e59246SSatish Balay #else
32359566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32369566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
323748e59246SSatish Balay #endif
3238f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32394beb1cfeSHong Zhang 
32400ac07820SSatish Balay     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
32419566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32429566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3243f4259b30SLisandro Dalcin     } else a->garray = NULL;
32440ac07820SSatish Balay 
32459566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32469566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32479566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32487fff6886SHong Zhang 
32499566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32509566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3251420957c1SBarry Smith   }
32529566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32530ac07820SSatish Balay   *newmat = mat;
32543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32550ac07820SSatish Balay }
325657b952d6SSatish Balay 
3257618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3258d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3259d71ae5a4SJacob Faibussowitsch {
3260b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3261b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3262b51a4376SLisandro Dalcin   PetscScalar *matvals;
3263b51a4376SLisandro Dalcin 
3264b51a4376SLisandro Dalcin   PetscFunctionBegin;
32659566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3266b51a4376SLisandro Dalcin 
3267b51a4376SLisandro Dalcin   /* read in matrix header */
32689566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32695f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32709371c9d4SSatish Balay   M  = header[1];
32719371c9d4SSatish Balay   N  = header[2];
32729371c9d4SSatish Balay   nz = header[3];
32735f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32745f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32755f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3276b51a4376SLisandro Dalcin 
3277b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32789566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3279618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3280618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3281618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3282b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3283b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3284b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3287b51a4376SLisandro Dalcin 
3288b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32905f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32929566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32959371c9d4SSatish Balay   mbs = m / bs;
32969371c9d4SSatish Balay   nbs = n / bs;
3297b51a4376SLisandro Dalcin 
3298b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
33009566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
33019371c9d4SSatish Balay   rowidxs[0] = 0;
33029371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
33031c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
33045f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3305b51a4376SLisandro Dalcin 
3306b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
33079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
33089566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
33099566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3310b51a4376SLisandro Dalcin 
3311b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3312b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3313b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3314618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3315b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3316b51a4376SLisandro Dalcin 
33179566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33189566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33199566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33209566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3321b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33229566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33239566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3324618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3325618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3326618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3327618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3328618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3329618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3330618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3331b51a4376SLisandro Dalcin             } else {
33329566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3333b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3334b51a4376SLisandro Dalcin             }
3335b51a4376SLisandro Dalcin           }
3336618cc2edSLisandro Dalcin         }
3337618cc2edSLisandro Dalcin       }
3338618cc2edSLisandro Dalcin     }
33399566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33409566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33419566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33429566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33439566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3344b51a4376SLisandro Dalcin   }
3345b51a4376SLisandro Dalcin 
3346b51a4376SLisandro Dalcin   /* store matrix values */
3347b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3348b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33499927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3350b51a4376SLisandro Dalcin   }
3351b51a4376SLisandro Dalcin 
33529566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33539566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3357b51a4376SLisandro Dalcin }
3358b51a4376SLisandro Dalcin 
3359d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3360d71ae5a4SJacob Faibussowitsch {
33617f489da9SVaclav Hapla   PetscBool isbinary;
33624683f7a4SShri Abhyankar 
33634683f7a4SShri Abhyankar   PetscFunctionBegin;
33649566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33655f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33669566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33684683f7a4SShri Abhyankar }
33694683f7a4SShri Abhyankar 
3370133cdb44SSatish Balay /*@
337111a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3372133cdb44SSatish Balay 
3373133cdb44SSatish Balay   Input Parameters:
3374a2b725a8SWilliam Gropp + mat  - the matrix
3375a2b725a8SWilliam Gropp - fact - factor
3376133cdb44SSatish Balay 
337711a5261eSBarry Smith   Options Database Key:
337811a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3379fee21e36SBarry Smith 
33808c890885SBarry Smith   Level: advanced
33818c890885SBarry Smith 
338267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3383133cdb44SSatish Balay @*/
3384d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3385d71ae5a4SJacob Faibussowitsch {
33865bf65638SKris Buschelman   PetscFunctionBegin;
3387cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33895bf65638SKris Buschelman }
33905bf65638SKris Buschelman 
3391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3392d71ae5a4SJacob Faibussowitsch {
339325fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3394133cdb44SSatish Balay 
3395133cdb44SSatish Balay   PetscFunctionBegin;
3396133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3397133cdb44SSatish Balay   baij->ht_fact = fact;
33983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3399133cdb44SSatish Balay }
3400f2a5309cSSatish Balay 
3401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3402d71ae5a4SJacob Faibussowitsch {
3403f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3404ab4d48faSStefano Zampini   PetscBool    flg;
34055fd66863SKarl Rupp 
3406f2a5309cSSatish Balay   PetscFunctionBegin;
34079566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
34085f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
340921e72a00SBarry Smith   if (Ad) *Ad = a->A;
341021e72a00SBarry Smith   if (Ao) *Ao = a->B;
341121e72a00SBarry Smith   if (colmap) *colmap = a->garray;
34123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3413f2a5309cSSatish Balay }
341485535b8eSBarry Smith 
341585535b8eSBarry Smith /*
341685535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
341785535b8eSBarry Smith */
341885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
341985535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
342085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
342185535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
342285535b8eSBarry Smith #endif
342385535b8eSBarry Smith 
34242920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
342585535b8eSBarry Smith /*@C
342611a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
342785535b8eSBarry Smith 
3428c3339decSBarry Smith   Collective
342985535b8eSBarry Smith 
343085535b8eSBarry Smith   Input Parameters:
3431fe59aa6dSJacob Faibussowitsch + matin  - the matrix
343285535b8eSBarry Smith . min    - number of input rows
343385535b8eSBarry Smith . im     - input rows
343485535b8eSBarry Smith . nin    - number of input columns
343585535b8eSBarry Smith . in     - input columns
343685535b8eSBarry Smith . v      - numerical values input
343711a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
343885535b8eSBarry Smith 
343920f4b53cSBarry Smith   Level: advanced
344020f4b53cSBarry Smith 
3441fe59aa6dSJacob Faibussowitsch   Developer Notes:
344211a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
344385535b8eSBarry Smith 
344467be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
344585535b8eSBarry Smith @*/
344666976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3447d71ae5a4SJacob Faibussowitsch {
344885535b8eSBarry Smith   /* convert input arguments to C version */
344985535b8eSBarry Smith   Mat        mat = *matin;
345085535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
345185535b8eSBarry Smith   InsertMode addv = *addvin;
345285535b8eSBarry Smith 
345385535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
345485535b8eSBarry Smith   const MatScalar *value;
345585535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3456ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
345785535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
345885535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3459d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
346085535b8eSBarry Smith 
346185535b8eSBarry Smith   PetscFunctionBegin;
346285535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
346326fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34645f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34655f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
346685535b8eSBarry Smith   if (mat->assembled) {
346785535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
346885535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
346985535b8eSBarry Smith   }
34709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
347185535b8eSBarry Smith 
347285535b8eSBarry Smith   if (!barray) {
34739566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
347485535b8eSBarry Smith     baij->barray = barray;
347585535b8eSBarry Smith   }
347685535b8eSBarry Smith 
347726fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
347826fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
347926fbe8dcSKarl Rupp 
348085535b8eSBarry Smith   for (i = 0; i < m; i++) {
348185535b8eSBarry Smith     if (im[i] < 0) continue;
34826bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
348385535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
348485535b8eSBarry Smith       row = im[i] - rstart;
348585535b8eSBarry Smith       for (j = 0; j < n; j++) {
348685535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
348785535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
348885535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
348985535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
349085535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
349185535b8eSBarry Smith         } else { /* Here a copy is required */
349285535b8eSBarry Smith           if (roworiented) {
349385535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
349485535b8eSBarry Smith           } else {
349585535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
349685535b8eSBarry Smith           }
349785535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3498ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
349985535b8eSBarry Smith           }
350085535b8eSBarry Smith           barray -= bs2;
350185535b8eSBarry Smith         }
350285535b8eSBarry Smith 
350385535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
350485535b8eSBarry Smith           col = in[j] - cstart;
35059566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3506f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3507f7d195e4SLawrence Mitchell           continue;
3508f7d195e4SLawrence Mitchell         } else {
3509f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
351085535b8eSBarry Smith           if (mat->was_assembled) {
351148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
351285535b8eSBarry Smith 
351385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
351485535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35159371c9d4SSatish Balay             {
35169371c9d4SSatish Balay               PetscInt data;
3517eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
351808401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
351985535b8eSBarry Smith             }
352085535b8eSBarry Smith   #else
352108401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
352285535b8eSBarry Smith   #endif
352385535b8eSBarry Smith #endif
352485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3525eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
352685535b8eSBarry Smith             col = (col - 1) / bs;
352785535b8eSBarry Smith #else
352885535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
352985535b8eSBarry Smith #endif
353085535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
35319566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
353285535b8eSBarry Smith               col = in[j];
353385535b8eSBarry Smith             }
353426fbe8dcSKarl Rupp           } else col = in[j];
35359566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
353685535b8eSBarry Smith         }
353785535b8eSBarry Smith       }
353885535b8eSBarry Smith     } else {
353985535b8eSBarry Smith       if (!baij->donotstash) {
354085535b8eSBarry Smith         if (roworiented) {
35419566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
354285535b8eSBarry Smith         } else {
35439566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
354485535b8eSBarry Smith         }
354585535b8eSBarry Smith       }
354685535b8eSBarry Smith     }
354785535b8eSBarry Smith   }
354885535b8eSBarry Smith 
354985535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35509566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355285535b8eSBarry Smith }
3553dfb205c3SBarry Smith 
3554dfb205c3SBarry Smith /*@
3555*d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3556dfb205c3SBarry Smith 
3557d083f849SBarry Smith   Collective
3558dfb205c3SBarry Smith 
3559dfb205c3SBarry Smith   Input Parameters:
3560dfb205c3SBarry Smith + comm - MPI communicator
3561dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
356211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3563dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3564*d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3565*d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3566*d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3567*d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3568483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3569dfb205c3SBarry Smith . j    - column indices
3570dfb205c3SBarry Smith - a    - matrix values
3571dfb205c3SBarry Smith 
3572dfb205c3SBarry Smith   Output Parameter:
3573dfb205c3SBarry Smith . mat - the matrix
3574dfb205c3SBarry Smith 
3575dfb205c3SBarry Smith   Level: intermediate
3576dfb205c3SBarry Smith 
3577dfb205c3SBarry Smith   Notes:
357867be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3579dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
358011a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3581dfb205c3SBarry Smith 
35823adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35833adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35843adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35853adadaf3SJed Brown   with column-major ordering within blocks.
35863adadaf3SJed Brown 
3587*d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3588dfb205c3SBarry Smith 
358967be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35907d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3591dfb205c3SBarry Smith @*/
3592d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3593d71ae5a4SJacob Faibussowitsch {
3594dfb205c3SBarry Smith   PetscFunctionBegin;
35955f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35965f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35979566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35999566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
36009566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
36019566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
36029566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
36039566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
36049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
36053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3606dfb205c3SBarry Smith }
3607e561ad89SHong Zhang 
3608d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3609d71ae5a4SJacob Faibussowitsch {
3610bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3611bd153df0SHong Zhang   PetscInt    *indx;
3612bd153df0SHong Zhang   PetscScalar *values;
3613e561ad89SHong Zhang 
3614e561ad89SHong Zhang   PetscFunctionBegin;
36159566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3616bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3617bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36182c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3619bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
362077f764caSHong Zhang     PetscMPIInt  rank, size;
3621e561ad89SHong Zhang 
36229566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36239371c9d4SSatish Balay     mbs = m / bs;
36249371c9d4SSatish Balay     Nbs = N / cbs;
362548a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3626da91a574SPierre Jolivet     nbs = n / cbs;
3627e561ad89SHong Zhang 
36289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3629d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
363077f764caSHong Zhang 
36319566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36329566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
363377f764caSHong Zhang     if (rank == size - 1) {
363477f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36355f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
363677f764caSHong Zhang     }
363777f764caSHong Zhang 
3638d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3639bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36409566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3641647a6520SHong Zhang       nnz = nnz / bs;
3642647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36439566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36449566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3645e561ad89SHong Zhang     }
36469566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3647e561ad89SHong Zhang 
36489566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36499566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36509566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36519566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36529566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36539566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3654d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36559566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3656e561ad89SHong Zhang   }
3657e561ad89SHong Zhang 
3658bd153df0SHong Zhang   /* numeric phase */
36599566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36609566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3661e561ad89SHong Zhang 
3662e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36639566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3664e561ad89SHong Zhang     Ii = i + rstart;
36659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36669566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3667e561ad89SHong Zhang   }
36689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3671e561ad89SHong Zhang }
3672