xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision db161fc60bc3a2cb9cef726e90816e2dfd95a544)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
61*db161fc6SPierre Jolivet   PetscScalar       *vv;
624e879edeSHong Zhang   Vec                vB, vA;
63*db161fc6SPierre Jolivet   const PetscScalar *va, *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
66c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
69*db161fc6SPierre Jolivet   PetscCall(VecGetArrayRead(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
76c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
91*db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayWrite(v, &vv));
92*db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayRead(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v)
101c7b600bfSPierre Jolivet {
102c7b600bfSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
103c7b600bfSPierre Jolivet   Vec          vB, vA;
104c7b600bfSPierre Jolivet 
105c7b600bfSPierre Jolivet   PetscFunctionBegin;
106c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
107c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->A, vA));
108c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
109c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->B, vB));
110c7b600bfSPierre Jolivet   PetscCall(VecAXPY(vA, 1.0, vB));
111c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vB));
112c7b600bfSPierre Jolivet   PetscCall(VecCopy(vA, v));
113c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vA));
114c7b600bfSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
115c7b600bfSPierre Jolivet }
116c7b600bfSPierre Jolivet 
11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
118d71ae5a4SJacob Faibussowitsch {
1197fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1207fc3c18eSBarry Smith 
1217fc3c18eSBarry Smith   PetscFunctionBegin;
1229566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1257fc3c18eSBarry Smith }
1267fc3c18eSBarry Smith 
12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
128d71ae5a4SJacob Faibussowitsch {
1297fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1307fc3c18eSBarry Smith 
1317fc3c18eSBarry Smith   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1357fc3c18eSBarry Smith }
1367fc3c18eSBarry Smith 
137537820f0SBarry Smith /*
138537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
13957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
140e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
14157b952d6SSatish Balay    length of colmap equals the global matrix length.
14257b952d6SSatish Balay */
143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
144d71ae5a4SJacob Faibussowitsch {
14557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
14657b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
147d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
14857b952d6SSatish Balay 
149d64ed03dSBarry Smith   PetscFunctionBegin;
150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
151eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
152c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
15348e59246SSatish Balay #else
1549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
155928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
15648e59246SSatish Balay #endif
1573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15857b952d6SSatish Balay }
15957b952d6SSatish Balay 
160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
161a8f51744SPierre Jolivet   do { \
16280c1aa95SSatish Balay     brow = row / bs; \
1638e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1648e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1659371c9d4SSatish Balay     rmax = aimax[brow]; \
1669371c9d4SSatish Balay     nrow = ailen[brow]; \
16780c1aa95SSatish Balay     bcol = col / bs; \
1689371c9d4SSatish Balay     ridx = row % bs; \
1699371c9d4SSatish Balay     cidx = col % bs; \
1709371c9d4SSatish Balay     low  = 0; \
1719371c9d4SSatish Balay     high = nrow; \
172ab26458aSBarry Smith     while (high - low > 3) { \
173ab26458aSBarry Smith       t = (low + high) / 2; \
174ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
175ab26458aSBarry Smith       else low = t; \
176ab26458aSBarry Smith     } \
177ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
17880c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
17980c1aa95SSatish Balay       if (rp[_i] == bcol) { \
18080c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
181eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
182eada6651SSatish Balay         else *bap = value; \
183ac7a638eSSatish Balay         goto a_noinsert; \
18480c1aa95SSatish Balay       } \
18580c1aa95SSatish Balay     } \
18689280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1875f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
18980c1aa95SSatish Balay     N = nrow++ - 1; \
19080c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1919566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1929566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
19480c1aa95SSatish Balay     rp[_i]                          = bcol; \
19580c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
196ac7a638eSSatish Balay   a_noinsert:; \
19780c1aa95SSatish Balay     ailen[brow] = nrow; \
198a8f51744SPierre Jolivet   } while (0)
19957b952d6SSatish Balay 
200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
201a8f51744SPierre Jolivet   do { \
202ac7a638eSSatish Balay     brow = row / bs; \
2038e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
2048e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
2059371c9d4SSatish Balay     rmax = bimax[brow]; \
2069371c9d4SSatish Balay     nrow = bilen[brow]; \
207ac7a638eSSatish Balay     bcol = col / bs; \
2089371c9d4SSatish Balay     ridx = row % bs; \
2099371c9d4SSatish Balay     cidx = col % bs; \
2109371c9d4SSatish Balay     low  = 0; \
2119371c9d4SSatish Balay     high = nrow; \
212ac7a638eSSatish Balay     while (high - low > 3) { \
213ac7a638eSSatish Balay       t = (low + high) / 2; \
214ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
215ac7a638eSSatish Balay       else low = t; \
216ac7a638eSSatish Balay     } \
217ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
218ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
219ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
220ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
221ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
222ac7a638eSSatish Balay         else *bap = value; \
223ac7a638eSSatish Balay         goto b_noinsert; \
224ac7a638eSSatish Balay       } \
225ac7a638eSSatish Balay     } \
22689280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2275f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
228fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
229ac7a638eSSatish Balay     N = nrow++ - 1; \
230ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2319566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
234ac7a638eSSatish Balay     rp[_i]                          = bcol; \
235ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
236ac7a638eSSatish Balay   b_noinsert:; \
237ac7a638eSSatish Balay     bilen[brow] = nrow; \
238a8f51744SPierre Jolivet   } while (0)
239ac7a638eSSatish Balay 
240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
241d71ae5a4SJacob Faibussowitsch {
24257b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
24393fea6afSBarry Smith   MatScalar    value;
244ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
245b24ad042SBarry Smith   PetscInt     i, j, row, col;
246d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
247d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
248d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
24957b952d6SSatish Balay 
250eada6651SSatish Balay   /* Some Variables required in the macro */
25180c1aa95SSatish Balay   Mat          A     = baij->A;
25257508eceSPierre Jolivet   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)A->data;
253b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2543eda8832SBarry Smith   MatScalar   *aa = a->a;
255ac7a638eSSatish Balay 
256ac7a638eSSatish Balay   Mat          B     = baij->B;
25757508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
258b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2593eda8832SBarry Smith   MatScalar   *ba = b->a;
260ac7a638eSSatish Balay 
261b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
262b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2633eda8832SBarry Smith   MatScalar *ap, *bap;
26480c1aa95SSatish Balay 
265d64ed03dSBarry Smith   PetscFunctionBegin;
26657b952d6SSatish Balay   for (i = 0; i < m; i++) {
2675ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2685f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
26957b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
27057b952d6SSatish Balay       row = im[i] - rstart_orig;
27157b952d6SSatish Balay       for (j = 0; j < n; j++) {
27257b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
27357b952d6SSatish Balay           col = in[j] - cstart_orig;
274db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
275db4deed7SKarl Rupp           else value = v[i + j * m];
276d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
277f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
278f7d195e4SLawrence Mitchell           continue;
279f7d195e4SLawrence Mitchell         } else {
280f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
28157b952d6SSatish Balay           if (mat->was_assembled) {
28248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
284eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
285bba1ac68SSatish Balay             col = col - 1;
28648e59246SSatish Balay #else
287bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
28848e59246SSatish Balay #endif
289f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2909566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2918295de27SSatish Balay               col = in[j];
2929bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2939bf004c3SSatish Balay               B     = baij->B;
29457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
2959371c9d4SSatish Balay               bimax = b->imax;
2969371c9d4SSatish Balay               bi    = b->i;
2979371c9d4SSatish Balay               bilen = b->ilen;
2989371c9d4SSatish Balay               bj    = b->j;
2999bf004c3SSatish Balay               ba    = b->a;
300f7d195e4SLawrence Mitchell             } else {
301f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
302f7d195e4SLawrence Mitchell               col += in[j] % bs;
303f7d195e4SLawrence Mitchell             }
3048295de27SSatish Balay           } else col = in[j];
305db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
306db4deed7SKarl Rupp           else value = v[i + j * m];
307d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3089566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
30957b952d6SSatish Balay         }
31057b952d6SSatish Balay       }
311d64ed03dSBarry Smith     } else {
3125f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
31390f02eecSBarry Smith       if (!baij->donotstash) {
3145080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
315ff2fd236SBarry Smith         if (roworiented) {
3169566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
317ff2fd236SBarry Smith         } else {
3189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
31957b952d6SSatish Balay         }
32057b952d6SSatish Balay       }
32157b952d6SSatish Balay     }
32290f02eecSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32457b952d6SSatish Balay }
32557b952d6SSatish Balay 
326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
327d71ae5a4SJacob Faibussowitsch {
328880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3298ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
330880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3318ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
332880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
333880c6e6aSBarry Smith   const PetscScalar *value       = v;
334880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
335880c6e6aSBarry Smith 
336880c6e6aSBarry Smith   PetscFunctionBegin;
337880c6e6aSBarry Smith   rp    = aj + ai[row];
338880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
339880c6e6aSBarry Smith   rmax  = imax[row];
340880c6e6aSBarry Smith   nrow  = ailen[row];
3418ab52850SBarry Smith   value = v;
3428ab52850SBarry Smith   low   = 0;
3438ab52850SBarry Smith   high  = nrow;
344880c6e6aSBarry Smith   while (high - low > 7) {
345880c6e6aSBarry Smith     t = (low + high) / 2;
346880c6e6aSBarry Smith     if (rp[t] > col) high = t;
347880c6e6aSBarry Smith     else low = t;
348880c6e6aSBarry Smith   }
349880c6e6aSBarry Smith   for (i = low; i < high; i++) {
350880c6e6aSBarry Smith     if (rp[i] > col) break;
351880c6e6aSBarry Smith     if (rp[i] == col) {
352880c6e6aSBarry Smith       bap = ap + bs2 * i;
353880c6e6aSBarry Smith       if (roworiented) {
354880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
356ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
357880c6e6aSBarry Smith           }
358880c6e6aSBarry Smith         } else {
3598ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
360ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
361880c6e6aSBarry Smith           }
362880c6e6aSBarry Smith         }
363880c6e6aSBarry Smith       } else {
364880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3658ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
366ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
367880c6e6aSBarry Smith             bap += bs;
368880c6e6aSBarry Smith           }
369880c6e6aSBarry Smith         } else {
3708ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
371ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
372880c6e6aSBarry Smith             bap += bs;
373880c6e6aSBarry Smith           }
374880c6e6aSBarry Smith         }
375880c6e6aSBarry Smith       }
376880c6e6aSBarry Smith       goto noinsert2;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   }
379880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3805f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
381880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3829371c9d4SSatish Balay   N = nrow++ - 1;
3839371c9d4SSatish Balay   high++;
384880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3859566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3869566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
387880c6e6aSBarry Smith   rp[i] = col;
388880c6e6aSBarry Smith   bap   = ap + bs2 * i;
389880c6e6aSBarry Smith   if (roworiented) {
3908ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
391ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
392880c6e6aSBarry Smith     }
393880c6e6aSBarry Smith   } else {
3948ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
395ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
396880c6e6aSBarry Smith     }
397880c6e6aSBarry Smith   }
398880c6e6aSBarry Smith noinsert2:;
399880c6e6aSBarry Smith   ailen[row] = nrow;
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401880c6e6aSBarry Smith }
402880c6e6aSBarry Smith 
4038ab52850SBarry Smith /*
4048ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
4058ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
4068ab52850SBarry Smith */
40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
408d71ae5a4SJacob Faibussowitsch {
409ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
410dd6ea824SBarry Smith   const PetscScalar *value;
411f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
412ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
413899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
414899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
415d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
416ab26458aSBarry Smith 
417b16ae2b1SBarry Smith   PetscFunctionBegin;
41830793edcSSatish Balay   if (!barray) {
4199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
42082502324SSatish Balay     baij->barray = barray;
42130793edcSSatish Balay   }
42230793edcSSatish Balay 
42326fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
42426fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
42526fbe8dcSKarl Rupp 
426ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4275ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4286bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
429ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
430ab26458aSBarry Smith       row = im[i] - rstart;
431ab26458aSBarry Smith       for (j = 0; j < n; j++) {
43215b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
43315b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
434f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
43515b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
436f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
43715b57d14SSatish Balay         } else { /* Here a copy is required */
438ab26458aSBarry Smith           if (roworiented) {
43953ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
440ab26458aSBarry Smith           } else {
44153ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
442abef11f7SSatish Balay           }
44353ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
44426fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
44553ef36baSBarry Smith             barray += bs;
44647513183SBarry Smith           }
44730793edcSSatish Balay           barray -= bs2;
44815b57d14SSatish Balay         }
449abef11f7SSatish Balay 
450abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
451abef11f7SSatish Balay           col = in[j] - cstart;
4529566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
453f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
454f7d195e4SLawrence Mitchell           continue;
455f7d195e4SLawrence Mitchell         } else {
456f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
457ab26458aSBarry Smith           if (mat->was_assembled) {
45848a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
459a5eb4965SSatish Balay 
460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
461eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
462b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
46348e59246SSatish Balay #else
464b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
46548e59246SSatish Balay #endif
466f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4679566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
468ab26458aSBarry Smith               col = in[j];
4695f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
470db4deed7SKarl Rupp           } else col = in[j];
4719566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
472ab26458aSBarry Smith         }
473ab26458aSBarry Smith       }
474d64ed03dSBarry Smith     } else {
4755f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
476ab26458aSBarry Smith       if (!baij->donotstash) {
477ff2fd236SBarry Smith         if (roworiented) {
4789566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
479ff2fd236SBarry Smith         } else {
4809566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
481ff2fd236SBarry Smith         }
482abef11f7SSatish Balay       }
483ab26458aSBarry Smith     }
484ab26458aSBarry Smith   }
4853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486ab26458aSBarry Smith }
4876fa18ffdSBarry Smith 
4880bdbc534SSatish Balay #define HASH_KEY             0.6180339887
489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
493d71ae5a4SJacob Faibussowitsch {
4940bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
495ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
496b24ad042SBarry Smith   PetscInt     i, j, row, col;
497d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
498d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
499d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
500329f5518SBarry Smith   PetscReal    tmp;
5013eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
502b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5030bdbc534SSatish Balay 
5040bdbc534SSatish Balay   PetscFunctionBegin;
5050bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5075f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5085f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50976bd3646SJed Brown     }
5100bdbc534SSatish Balay     row = im[i];
511c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5120bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5130bdbc534SSatish Balay         col = in[j];
514db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
515db4deed7SKarl Rupp         else value = v[i + j * m];
516b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
517c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
518c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5190bdbc534SSatish Balay 
520c2760754SSatish Balay         idx = h1;
52176bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
522187ce0cbSSatish Balay           insert_ct++;
523187ce0cbSSatish Balay           total_ct++;
524187ce0cbSSatish Balay           if (HT[idx] != key) {
525fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
526187ce0cbSSatish Balay             if (idx == size) {
527fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5285f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
529187ce0cbSSatish Balay             }
530187ce0cbSSatish Balay           }
53176bd3646SJed Brown         } else if (HT[idx] != key) {
532fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
533c2760754SSatish Balay           if (idx == size) {
534fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5355f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536c2760754SSatish Balay           }
537c2760754SSatish Balay         }
538c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
539c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5410bdbc534SSatish Balay       }
54226fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
543ff2fd236SBarry Smith       if (roworiented) {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545ff2fd236SBarry Smith       } else {
5469566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5470bdbc534SSatish Balay       }
5480bdbc534SSatish Balay     }
5490bdbc534SSatish Balay   }
55076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
551abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
552abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55376bd3646SJed Brown   }
5543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5550bdbc534SSatish Balay }
5560bdbc534SSatish Balay 
55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558d71ae5a4SJacob Faibussowitsch {
5590bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
560ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
561b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
562899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
563d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565329f5518SBarry Smith   PetscReal          tmp;
5663eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
567dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
568b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5690bdbc534SSatish Balay 
570d0a41580SSatish Balay   PetscFunctionBegin;
57126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57326fbe8dcSKarl Rupp 
5740bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5765f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5775f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57876bd3646SJed Brown     }
5790bdbc534SSatish Balay     row = im[i];
580ab715e2cSSatish Balay     v_t = v + i * nbs2;
581c2760754SSatish Balay     if (row >= rstart && row < rend) {
5820bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5830bdbc534SSatish Balay         col = in[j];
5840bdbc534SSatish Balay 
5850bdbc534SSatish Balay         /* Look up into the Hash Table */
586c2760754SSatish Balay         key = row * Nbs + col + 1;
587c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5880bdbc534SSatish Balay 
589c2760754SSatish Balay         idx = h1;
59076bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
591187ce0cbSSatish Balay           total_ct++;
592187ce0cbSSatish Balay           insert_ct++;
593187ce0cbSSatish Balay           if (HT[idx] != key) {
594fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
595187ce0cbSSatish Balay             if (idx == size) {
596fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5975f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598187ce0cbSSatish Balay             }
599187ce0cbSSatish Balay           }
60076bd3646SJed Brown         } else if (HT[idx] != key) {
601fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
602c2760754SSatish Balay           if (idx == size) {
603fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
6045f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
605c2760754SSatish Balay           }
606c2760754SSatish Balay         }
607c2760754SSatish Balay         baij_a = HD[idx];
6080bdbc534SSatish Balay         if (roworiented) {
609c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
610187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
611187ce0cbSSatish Balay           value = v_t;
612187ce0cbSSatish Balay           v_t += bs;
613fef45726SSatish Balay           if (addv == ADD_VALUES) {
614c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
615ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
616b4cc0f5aSSatish Balay             }
617fef45726SSatish Balay           } else {
618c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
619ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
620fef45726SSatish Balay             }
621fef45726SSatish Balay           }
6220bdbc534SSatish Balay         } else {
6230bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
624fef45726SSatish Balay           if (addv == ADD_VALUES) {
625b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
626ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
627fef45726SSatish Balay             }
628fef45726SSatish Balay           } else {
629fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
631b4cc0f5aSSatish Balay             }
6320bdbc534SSatish Balay           }
6330bdbc534SSatish Balay         }
6340bdbc534SSatish Balay       }
6350bdbc534SSatish Balay     } else {
6360bdbc534SSatish Balay       if (!baij->donotstash) {
6370bdbc534SSatish Balay         if (roworiented) {
6389566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6390bdbc534SSatish Balay         } else {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410bdbc534SSatish Balay         }
6420bdbc534SSatish Balay       }
6430bdbc534SSatish Balay     }
6440bdbc534SSatish Balay   }
64576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
646abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
647abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
64876bd3646SJed Brown   }
6493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6500bdbc534SSatish Balay }
651133cdb44SSatish Balay 
65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
653d71ae5a4SJacob Faibussowitsch {
654d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
655d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
656d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
657d6de1c52SSatish Balay 
658133cdb44SSatish Balay   PetscFunctionBegin;
659d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66054c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66154c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
662d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
663d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
664d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
66554c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66654c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
667d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
668d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6699566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
670d64ed03dSBarry Smith         } else {
67148a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
673eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
674fa46199cSSatish Balay           data--;
67548e59246SSatish Balay #else
67648e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
67748e59246SSatish Balay #endif
67848e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
679d9d09a02SSatish Balay           else {
68048e59246SSatish Balay             col = data + idxn[j] % bs;
6819566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
682d6de1c52SSatish Balay           }
683d6de1c52SSatish Balay         }
684d6de1c52SSatish Balay       }
685f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
686d6de1c52SSatish Balay   }
6873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
688d6de1c52SSatish Balay }
689d6de1c52SSatish Balay 
69066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
691d71ae5a4SJacob Faibussowitsch {
692d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
693d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
694d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
695329f5518SBarry Smith   PetscReal    sum = 0.0;
6963eda8832SBarry Smith   MatScalar   *v;
697d6de1c52SSatish Balay 
698d64ed03dSBarry Smith   PetscFunctionBegin;
699d6de1c52SSatish Balay   if (baij->size == 1) {
7009566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
701d6de1c52SSatish Balay   } else {
702d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
703d6de1c52SSatish Balay       v  = amat->a;
7048a62d963SHong Zhang       nz = amat->nz * bs2;
7058a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7069371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7079371c9d4SSatish Balay         v++;
708d6de1c52SSatish Balay       }
709d6de1c52SSatish Balay       v  = bmat->a;
7108a62d963SHong Zhang       nz = bmat->nz * bs2;
7118a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7129371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7139371c9d4SSatish Balay         v++;
714d6de1c52SSatish Balay       }
715462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7168f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7178a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7188a62d963SHong Zhang       PetscReal  *tmp, *tmp2;
719899cda47SBarry Smith       PetscInt   *jj, *garray = baij->garray, cstart = baij->rstartbs;
7206497c311SBarry Smith       PetscMPIInt iN;
7216497c311SBarry Smith 
7229566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7249371c9d4SSatish Balay       v  = amat->a;
7259371c9d4SSatish Balay       jj = amat->j;
7268a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7278a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7288a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7298a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7309371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7319371c9d4SSatish Balay             v++;
7328a62d963SHong Zhang           }
7338a62d963SHong Zhang         }
7348a62d963SHong Zhang         jj++;
7358a62d963SHong Zhang       }
7369371c9d4SSatish Balay       v  = bmat->a;
7379371c9d4SSatish Balay       jj = bmat->j;
7388a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7398a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7408a62d963SHong Zhang           col = bs * garray[*jj] + j;
7418a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7429371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7439371c9d4SSatish Balay             v++;
7448a62d963SHong Zhang           }
7458a62d963SHong Zhang         }
7468a62d963SHong Zhang         jj++;
7478a62d963SHong Zhang       }
7486497c311SBarry Smith       PetscCall(PetscMPIIntCast(mat->cmap->N, &iN));
749462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7508a62d963SHong Zhang       *nrm = 0.0;
751d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7528a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7538a62d963SHong Zhang       }
7549566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7559566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7568a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
757577dd1f9SKris Buschelman       PetscReal *sums;
7589566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7598a62d963SHong Zhang       sum = 0.0;
7608a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7618a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7628a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7638a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7648a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7658a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7668a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7679371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7689371c9d4SSatish Balay               v++;
7698a62d963SHong Zhang             }
7708a62d963SHong Zhang           }
7718a62d963SHong Zhang         }
7728a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7738a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7748a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7758a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7768a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7779371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7789371c9d4SSatish Balay               v++;
7798a62d963SHong Zhang             }
7808a62d963SHong Zhang           }
7818a62d963SHong Zhang         }
7828a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7838a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7848a62d963SHong Zhang         }
7858a62d963SHong Zhang       }
786462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7879566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
788ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
789d64ed03dSBarry Smith   }
7903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
791d6de1c52SSatish Balay }
79257b952d6SSatish Balay 
793fef45726SSatish Balay /*
794fef45726SSatish Balay   Creates the hash table, and sets the table
795fef45726SSatish Balay   This table is created only once.
796fef45726SSatish Balay   If new entried need to be added to the matrix
797fef45726SSatish Balay   then the hash table has to be destroyed and
798fef45726SSatish Balay   recreated.
799fef45726SSatish Balay */
80066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
801d71ae5a4SJacob Faibussowitsch {
802596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
803596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
804596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
805b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
806fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
807899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
808b24ad042SBarry Smith   PetscInt    *HT, key;
8093eda8832SBarry Smith   MatScalar  **HD;
810329f5518SBarry Smith   PetscReal    tmp;
8116cf91177SBarry Smith #if defined(PETSC_USE_INFO)
812b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8134a15367fSSatish Balay #endif
814fef45726SSatish Balay 
815d64ed03dSBarry Smith   PetscFunctionBegin;
8163ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
817fef45726SSatish Balay 
818fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
819fca92195SBarry Smith   ht_size       = baij->ht_size;
8200bdbc534SSatish Balay 
821fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8229566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
823b9e4cc15SSatish Balay   HD = baij->hd;
824a07cd24cSSatish Balay   HT = baij->ht;
825b9e4cc15SSatish Balay 
826596b8d2eSBarry Smith   /* Loop Over A */
8270bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
828596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8290bdbc534SSatish Balay       row = i + rstart;
8300bdbc534SSatish Balay       col = aj[j] + cstart;
831596b8d2eSBarry Smith 
832187ce0cbSSatish Balay       key = row * Nbs + col + 1;
833fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
834fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
835fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
836fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
837fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
838596b8d2eSBarry Smith           break;
8396cf91177SBarry Smith #if defined(PETSC_USE_INFO)
840187ce0cbSSatish Balay         } else {
841187ce0cbSSatish Balay           ct++;
842187ce0cbSSatish Balay #endif
843596b8d2eSBarry Smith         }
844187ce0cbSSatish Balay       }
8456cf91177SBarry Smith #if defined(PETSC_USE_INFO)
846187ce0cbSSatish Balay       if (k > max) max = k;
847187ce0cbSSatish Balay #endif
848596b8d2eSBarry Smith     }
849596b8d2eSBarry Smith   }
850596b8d2eSBarry Smith   /* Loop Over B */
8510bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
852596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8530bdbc534SSatish Balay       row = i + rstart;
8540bdbc534SSatish Balay       col = garray[bj[j]];
855187ce0cbSSatish Balay       key = row * Nbs + col + 1;
856fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
857fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
858fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
859fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
860fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
861596b8d2eSBarry Smith           break;
8626cf91177SBarry Smith #if defined(PETSC_USE_INFO)
863187ce0cbSSatish Balay         } else {
864187ce0cbSSatish Balay           ct++;
865187ce0cbSSatish Balay #endif
866596b8d2eSBarry Smith         }
867187ce0cbSSatish Balay       }
8686cf91177SBarry Smith #if defined(PETSC_USE_INFO)
869187ce0cbSSatish Balay       if (k > max) max = k;
870187ce0cbSSatish Balay #endif
871596b8d2eSBarry Smith     }
872596b8d2eSBarry Smith   }
873596b8d2eSBarry Smith 
874596b8d2eSBarry Smith   /* Print Summary */
8756cf91177SBarry Smith #if defined(PETSC_USE_INFO)
876fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87726fbe8dcSKarl Rupp     if (HT[i]) j++;
878c38d4ed2SBarry Smith   }
8799566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
880187ce0cbSSatish Balay #endif
8813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
882596b8d2eSBarry Smith }
88357b952d6SSatish Balay 
88466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
885d71ae5a4SJacob Faibussowitsch {
886bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
887b24ad042SBarry Smith   PetscInt     nstash, reallocs;
888bbb85fb3SSatish Balay 
889bbb85fb3SSatish Balay   PetscFunctionBegin;
8903ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
891bbb85fb3SSatish Balay 
8929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8949566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8959566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8969566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8979566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
899bbb85fb3SSatish Balay }
900bbb85fb3SSatish Balay 
90166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
902d71ae5a4SJacob Faibussowitsch {
903bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90491c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
905b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
906e44c0bd4SBarry Smith   PetscInt    *row, *col;
907ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9083eda8832SBarry Smith   MatScalar   *val;
909b24ad042SBarry Smith   PetscMPIInt  n;
910bbb85fb3SSatish Balay 
911bbb85fb3SSatish Balay   PetscFunctionBegin;
9125fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9134cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
914a2d1c673SSatish Balay     while (1) {
9159566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
916a2d1c673SSatish Balay       if (!flg) break;
917a2d1c673SSatish Balay 
918bbb85fb3SSatish Balay       for (i = 0; i < n;) {
919bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92026fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92226fbe8dcSKarl Rupp         }
923bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
924bbb85fb3SSatish Balay         else ncols = n - i;
925bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9269566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
927bbb85fb3SSatish Balay         i = j;
928bbb85fb3SSatish Balay       }
929bbb85fb3SSatish Balay     }
9309566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
931a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9325e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
933a2d1c673SSatish Balay        restore the original flags */
934a2d1c673SSatish Balay     r1 = baij->roworiented;
935a2d1c673SSatish Balay     r2 = a->roworiented;
93691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93726fbe8dcSKarl Rupp 
9387c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9397c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
940f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
941a2d1c673SSatish Balay     while (1) {
9429566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
943a2d1c673SSatish Balay       if (!flg) break;
944a2d1c673SSatish Balay 
945a2d1c673SSatish Balay       for (i = 0; i < n;) {
946a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94726fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
94826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94926fbe8dcSKarl Rupp         }
950a2d1c673SSatish Balay         if (j < n) ncols = j - i;
951a2d1c673SSatish Balay         else ncols = n - i;
9529566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
953a2d1c673SSatish Balay         i = j;
954a2d1c673SSatish Balay       }
955a2d1c673SSatish Balay     }
9569566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95726fbe8dcSKarl Rupp 
958a2d1c673SSatish Balay     baij->roworiented                           = r1;
959a2d1c673SSatish Balay     a->roworiented                              = r2;
9605e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
961bbb85fb3SSatish Balay   }
962bbb85fb3SSatish Balay 
9639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
965bbb85fb3SSatish Balay 
966bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9676aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
968bbb85fb3SSatish Balay   /*
969bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
970bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
971bbb85fb3SSatish Balay   */
972bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
973462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
97448a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
975bbb85fb3SSatish Balay   }
976bbb85fb3SSatish Balay 
97748a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
980bbb85fb3SSatish Balay 
9816cf91177SBarry Smith #if defined(PETSC_USE_INFO)
982bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9839566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98426fbe8dcSKarl Rupp 
985bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
986bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
987bbb85fb3SSatish Balay   }
988bbb85fb3SSatish Balay #endif
989bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9909566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99126fbe8dcSKarl Rupp 
992bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
993bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
994bbb85fb3SSatish Balay   }
995bbb85fb3SSatish Balay 
9969566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
99726fbe8dcSKarl Rupp 
998f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9994f9cfa9eSBarry Smith 
10004f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
1001f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
1002e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
1003462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1004e56f5c9eSBarry Smith   }
10053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1006bbb85fb3SSatish Balay }
100757b952d6SSatish Balay 
10087da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10099804daf3SBarry Smith #include <petscdraw.h>
1010d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1011d71ae5a4SJacob Faibussowitsch {
101257b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10137da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1014d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1015ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1016b0a32e0cSBarry Smith   PetscViewer       sviewer;
1017f3ef73ceSBarry Smith   PetscViewerFormat format;
101857b952d6SSatish Balay 
1019d64ed03dSBarry Smith   PetscFunctionBegin;
10209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
102232077d6dSBarry Smith   if (iascii) {
10239566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1024456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10254e220ebcSLois Curfman McInnes       MatInfo info;
10269566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10279566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10289566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10299371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10309371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10319566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10329566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10339566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10349566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10369566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10379566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10389566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10393ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1040fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10419566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10423ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104304929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10443ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104557b952d6SSatish Balay     }
104657b952d6SSatish Balay   }
104757b952d6SSatish Balay 
10480f5bd95cSBarry Smith   if (isdraw) {
1049b0a32e0cSBarry Smith     PetscDraw draw;
1050ace3abfcSBarry Smith     PetscBool isnull;
10519566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10529566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10533ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
105457b952d6SSatish Balay   }
105557b952d6SSatish Balay 
10567da1fb6eSBarry Smith   {
105757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
105857b952d6SSatish Balay     Mat          A;
105957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1060d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10613eda8832SBarry Smith     MatScalar   *a;
10623e219373SBarry Smith     const char  *matname;
106357b952d6SSatish Balay 
1064f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1065f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10669566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1067dd400576SPatrick Sanan     if (rank == 0) {
10689566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1069d64ed03dSBarry Smith     } else {
10709566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
107157b952d6SSatish Balay     }
10729566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10739566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
107557b952d6SSatish Balay 
107657b952d6SSatish Balay     /* copy over the A part */
107757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10789371c9d4SSatish Balay     ai   = Aloc->i;
10799371c9d4SSatish Balay     aj   = Aloc->j;
10809371c9d4SSatish Balay     a    = Aloc->a;
10819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
108257b952d6SSatish Balay 
108357b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1084899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108526fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108657b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1087899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
108857b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10899566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10909371c9d4SSatish Balay           col++;
10919371c9d4SSatish Balay           a += bs;
109257b952d6SSatish Balay         }
109357b952d6SSatish Balay       }
109457b952d6SSatish Balay     }
109557b952d6SSatish Balay     /* copy over the B part */
109657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10979371c9d4SSatish Balay     ai   = Aloc->i;
10989371c9d4SSatish Balay     aj   = Aloc->j;
10999371c9d4SSatish Balay     a    = Aloc->a;
110057b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1101899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
110226fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
110357b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
110457b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
110557b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11069566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11079371c9d4SSatish Balay           col++;
11089371c9d4SSatish Balay           a += bs;
110957b952d6SSatish Balay         }
111057b952d6SSatish Balay       }
111157b952d6SSatish Balay     }
11129566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11139566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11149566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
111555843e3eSBarry Smith     /*
111655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1117b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
111855843e3eSBarry Smith     */
11199566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
112023a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1121dd400576SPatrick Sanan     if (rank == 0) {
1122f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1123f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
112457b952d6SSatish Balay     }
11259566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11269566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
112757b952d6SSatish Balay   }
11283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112957b952d6SSatish Balay }
113057b952d6SSatish Balay 
1131618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1132d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1133d71ae5a4SJacob Faibussowitsch {
1134b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1135b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1136b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1137b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
113817a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
11396497c311SBarry Smith   PetscCount      nz, hnz;
1140b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1141b51a4376SLisandro Dalcin   PetscScalar    *matvals;
114217a3732bSBarry Smith   PetscMPIInt     rank;
1143660746e0SBarry Smith 
1144660746e0SBarry Smith   PetscFunctionBegin;
11459566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1146b51a4376SLisandro Dalcin 
1147b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1148b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1149b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1150b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1151b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1152b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1153b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1154b51a4376SLisandro Dalcin 
1155b51a4376SLisandro Dalcin   /* write matrix header */
1156660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11579371c9d4SSatish Balay   header[1] = M;
11589371c9d4SSatish Balay   header[2] = N;
11596497c311SBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
116017a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
116117a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11629566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1163660746e0SBarry Smith 
1164b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1166b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11679371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11689566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11699566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1170660746e0SBarry Smith 
1171b51a4376SLisandro Dalcin   /* fill in and store column indices */
11729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1173b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1174b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1175b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1176b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11779371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1178660746e0SBarry Smith       }
1179b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11809371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1181b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11829371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1183660746e0SBarry Smith     }
1184660746e0SBarry Smith   }
11856497c311SBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz);
11869566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11879566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1188660746e0SBarry Smith 
1189b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1191b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1192b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1193b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1194b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11959371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1196660746e0SBarry Smith       }
1197b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11989371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1199b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
12009371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1201660746e0SBarry Smith     }
1202b51a4376SLisandro Dalcin   }
12039566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12049566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1205660746e0SBarry Smith 
1206b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12079566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1209660746e0SBarry Smith }
1210660746e0SBarry Smith 
1211d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1212d71ae5a4SJacob Faibussowitsch {
1213ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
121457b952d6SSatish Balay 
1215d64ed03dSBarry Smith   PetscFunctionBegin;
12169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1220660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12219566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12221baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122457b952d6SSatish Balay }
122557b952d6SSatish Balay 
122666976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1227d71ae5a4SJacob Faibussowitsch {
1228cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1229b24ad042SBarry Smith   PetscInt     nt;
1230cee3aa6bSSatish Balay 
1231d64ed03dSBarry Smith   PetscFunctionBegin;
12329566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12335f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12349566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1235da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12369566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12379566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12389566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12399566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1241cee3aa6bSSatish Balay }
1242cee3aa6bSSatish Balay 
124366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1244d71ae5a4SJacob Faibussowitsch {
1245cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1246d64ed03dSBarry Smith 
1247d64ed03dSBarry Smith   PetscFunctionBegin;
12489566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12499566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12509566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1253cee3aa6bSSatish Balay }
1254cee3aa6bSSatish Balay 
125566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1256d71ae5a4SJacob Faibussowitsch {
1257cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1258cee3aa6bSSatish Balay 
1259d64ed03dSBarry Smith   PetscFunctionBegin;
1260cee3aa6bSSatish Balay   /* do nondiagonal part */
12619566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1262cee3aa6bSSatish Balay   /* do local part */
12639566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1264e4a140f6SJunchao Zhang   /* add partial results together */
12659566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12669566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1268cee3aa6bSSatish Balay }
1269cee3aa6bSSatish Balay 
127066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1271d71ae5a4SJacob Faibussowitsch {
1272cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1273cee3aa6bSSatish Balay 
1274d64ed03dSBarry Smith   PetscFunctionBegin;
1275cee3aa6bSSatish Balay   /* do nondiagonal part */
12769566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1277cee3aa6bSSatish Balay   /* do local part */
12789566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1279e4a140f6SJunchao Zhang   /* add partial results together */
12809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1283cee3aa6bSSatish Balay }
1284cee3aa6bSSatish Balay 
1285cee3aa6bSSatish Balay /*
1286cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1287cee3aa6bSSatish Balay    diagonal block
1288cee3aa6bSSatish Balay */
128966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1290d71ae5a4SJacob Faibussowitsch {
1291d64ed03dSBarry Smith   PetscFunctionBegin;
12925f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12939566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1295cee3aa6bSSatish Balay }
1296cee3aa6bSSatish Balay 
129766976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1298d71ae5a4SJacob Faibussowitsch {
1299cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1300d64ed03dSBarry Smith 
1301d64ed03dSBarry Smith   PetscFunctionBegin;
13029566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
13039566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1305cee3aa6bSSatish Balay }
1306026e39d0SSatish Balay 
1307d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1308d71ae5a4SJacob Faibussowitsch {
1309acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
131087828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1311d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1312d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1313899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1314acdf5bf4SSatish Balay 
1315d64ed03dSBarry Smith   PetscFunctionBegin;
13165f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13175f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1318acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1319acdf5bf4SSatish Balay 
1320acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1321acdf5bf4SSatish Balay     /*
1322acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1323acdf5bf4SSatish Balay     */
1324acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1325b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1326bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1327acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
132826fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1329acdf5bf4SSatish Balay     }
13309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1331acdf5bf4SSatish Balay   }
1332d9d09a02SSatish Balay   lrow = row - brstart;
1333acdf5bf4SSatish Balay 
13349371c9d4SSatish Balay   pvA = &vworkA;
13359371c9d4SSatish Balay   pcA = &cworkA;
13369371c9d4SSatish Balay   pvB = &vworkB;
13379371c9d4SSatish Balay   pcB = &cworkB;
13389371c9d4SSatish Balay   if (!v) {
13399371c9d4SSatish Balay     pvA = NULL;
13409371c9d4SSatish Balay     pvB = NULL;
13419371c9d4SSatish Balay   }
13429371c9d4SSatish Balay   if (!idx) {
13439371c9d4SSatish Balay     pcA = NULL;
13449371c9d4SSatish Balay     if (!v) pcB = NULL;
13459371c9d4SSatish Balay   }
13469566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13479566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1348acdf5bf4SSatish Balay   nztot = nzA + nzB;
1349acdf5bf4SSatish Balay 
1350acdf5bf4SSatish Balay   cmap = mat->garray;
1351acdf5bf4SSatish Balay   if (v || idx) {
1352acdf5bf4SSatish Balay     if (nztot) {
1353acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1354b24ad042SBarry Smith       PetscInt imark = -1;
1355acdf5bf4SSatish Balay       if (v) {
1356acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1357acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1358d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1359acdf5bf4SSatish Balay           else break;
1360acdf5bf4SSatish Balay         }
1361acdf5bf4SSatish Balay         imark = i;
1362acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1363acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1364acdf5bf4SSatish Balay       }
1365acdf5bf4SSatish Balay       if (idx) {
1366acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1367acdf5bf4SSatish Balay         if (imark > -1) {
1368ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1369acdf5bf4SSatish Balay         } else {
1370acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
137126fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1372acdf5bf4SSatish Balay             else break;
1373acdf5bf4SSatish Balay           }
1374acdf5bf4SSatish Balay           imark = i;
1375acdf5bf4SSatish Balay         }
1376d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1377d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1378acdf5bf4SSatish Balay       }
1379d64ed03dSBarry Smith     } else {
1380f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1381f4259b30SLisandro Dalcin       if (v) *v = NULL;
1382d212a18eSSatish Balay     }
1383acdf5bf4SSatish Balay   }
1384acdf5bf4SSatish Balay   *nz = nztot;
13859566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13869566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1388acdf5bf4SSatish Balay }
1389acdf5bf4SSatish Balay 
1390d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1391d71ae5a4SJacob Faibussowitsch {
1392acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1393d64ed03dSBarry Smith 
1394d64ed03dSBarry Smith   PetscFunctionBegin;
13955f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1396acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398acdf5bf4SSatish Balay }
1399acdf5bf4SSatish Balay 
140066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1401d71ae5a4SJacob Faibussowitsch {
140258667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1403d64ed03dSBarry Smith 
1404d64ed03dSBarry Smith   PetscFunctionBegin;
14059566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14069566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140858667388SSatish Balay }
14090ac07820SSatish Balay 
141066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1411d71ae5a4SJacob Faibussowitsch {
14124e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14134e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14143966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14150ac07820SSatish Balay 
1416d64ed03dSBarry Smith   PetscFunctionBegin;
1417d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141826fbe8dcSKarl Rupp 
14199566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
142026fbe8dcSKarl Rupp 
14219371c9d4SSatish Balay   isend[0] = info->nz_used;
14229371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14239371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14249371c9d4SSatish Balay   isend[3] = info->memory;
14259371c9d4SSatish Balay   isend[4] = info->mallocs;
142626fbe8dcSKarl Rupp 
14279566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
142826fbe8dcSKarl Rupp 
14299371c9d4SSatish Balay   isend[0] += info->nz_used;
14309371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14319371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14329371c9d4SSatish Balay   isend[3] += info->memory;
14339371c9d4SSatish Balay   isend[4] += info->mallocs;
143426fbe8dcSKarl Rupp 
14350ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14364e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14374e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14384e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14394e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14404e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14410ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1442462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
144326fbe8dcSKarl Rupp 
14444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14490ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1450462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
145126fbe8dcSKarl Rupp 
14524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
145798921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14584e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14594e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14604e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14620ac07820SSatish Balay }
14630ac07820SSatish Balay 
146466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1465d71ae5a4SJacob Faibussowitsch {
146658667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
146758667388SSatish Balay 
1468d64ed03dSBarry Smith   PetscFunctionBegin;
146912c028f9SKris Buschelman   switch (op) {
1470512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1473a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
147412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147543674050SBarry Smith     MatCheckPreallocated(A, 1);
14769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147812c028f9SKris Buschelman     break;
147912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
148043674050SBarry Smith     MatCheckPreallocated(A, 1);
14814e0d8c25SBarry Smith     a->roworiented = flg;
148226fbe8dcSKarl Rupp 
14839566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14849566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148512c028f9SKris Buschelman     break;
14868c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1487d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1488d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1489d71ae5a4SJacob Faibussowitsch     break;
1490d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1491d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1492d71ae5a4SJacob Faibussowitsch     break;
149312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14944e0d8c25SBarry Smith     a->ht_flag = flg;
1495abf3b562SBarry Smith     a->ht_fact = 1.39;
149612c028f9SKris Buschelman     break;
149777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
149877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14992188ac68SBarry Smith   case MAT_HERMITIAN:
1500c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15012188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1502b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1503b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1504b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
150577e54ba9SKris Buschelman     break;
1506d71ae5a4SJacob Faibussowitsch   default:
1507d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1508d64ed03dSBarry Smith   }
15093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151058667388SSatish Balay }
151158667388SSatish Balay 
151266976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1513d71ae5a4SJacob Faibussowitsch {
15140ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15150ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15160ac07820SSatish Balay   Mat          B;
1517d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1518d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15193eda8832SBarry Smith   MatScalar   *a;
15200ac07820SSatish Balay 
1521d64ed03dSBarry Smith   PetscFunctionBegin;
15227fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1523cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15249566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15259566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15269566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15272e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15289566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1529fc4dec0aSBarry Smith   } else {
1530fc4dec0aSBarry Smith     B = *matout;
1531fc4dec0aSBarry Smith   }
15320ac07820SSatish Balay 
15330ac07820SSatish Balay   /* copy over the A part */
15340ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15359371c9d4SSatish Balay   ai   = Aloc->i;
15369371c9d4SSatish Balay   aj   = Aloc->j;
15379371c9d4SSatish Balay   a    = Aloc->a;
15389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15390ac07820SSatish Balay 
15400ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1541899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154226fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15430ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1544899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15450ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15469566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
154726fbe8dcSKarl Rupp 
15489371c9d4SSatish Balay         col++;
15499371c9d4SSatish Balay         a += bs;
15500ac07820SSatish Balay       }
15510ac07820SSatish Balay     }
15520ac07820SSatish Balay   }
15530ac07820SSatish Balay   /* copy over the B part */
15540ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15559371c9d4SSatish Balay   ai   = Aloc->i;
15569371c9d4SSatish Balay   aj   = Aloc->j;
15579371c9d4SSatish Balay   a    = Aloc->a;
15580ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1559899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
156026fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15610ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15620ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15630ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15649566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
156526fbe8dcSKarl Rupp         col++;
156626fbe8dcSKarl Rupp         a += bs;
15670ac07820SSatish Balay       }
15680ac07820SSatish Balay     }
15690ac07820SSatish Balay   }
15709566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15730ac07820SSatish Balay 
1574cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
157548a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15770ac07820SSatish Balay }
15780e95ebc0SSatish Balay 
157966976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1580d71ae5a4SJacob Faibussowitsch {
158136c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
158236c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1583b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15840e95ebc0SSatish Balay 
1585d64ed03dSBarry Smith   PetscFunctionBegin;
15869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
158736c4a09eSSatish Balay   if (rr) {
15889566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15895f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
159036c4a09eSSatish Balay     /* Overlap communication with computation. */
15919566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
159236c4a09eSSatish Balay   }
15930e95ebc0SSatish Balay   if (ll) {
15949566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15955f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1596dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15970e95ebc0SSatish Balay   }
159836c4a09eSSatish Balay   /* scale  the diagonal block */
1599dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
160036c4a09eSSatish Balay 
160136c4a09eSSatish Balay   if (rr) {
160236c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
16039566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1604dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
160536c4a09eSSatish Balay   }
16063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16070e95ebc0SSatish Balay }
16080e95ebc0SSatish Balay 
160966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1610d71ae5a4SJacob Faibussowitsch {
16110ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
161265a92638SMatthew G. Knepley   PetscInt    *lrows;
16136e520ac8SStefano Zampini   PetscInt     r, len;
161494342113SStefano Zampini   PetscBool    cong;
16150ac07820SSatish Balay 
1616d64ed03dSBarry Smith   PetscFunctionBegin;
16176e520ac8SStefano Zampini   /* get locally owned rows */
16189566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1619dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
162097b48c8fSBarry Smith   if (x && b) {
162165a92638SMatthew G. Knepley     const PetscScalar *xx;
162265a92638SMatthew G. Knepley     PetscScalar       *bb;
162365a92638SMatthew G. Knepley 
16249566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16259566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
162665a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16279566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
162997b48c8fSBarry Smith   }
163097b48c8fSBarry Smith 
16310ac07820SSatish Balay   /* actually zap the local rows */
163272dacd9aSBarry Smith   /*
163372dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1634a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
163572dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
163672dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
163772dacd9aSBarry Smith 
163872dacd9aSBarry Smith   */
16399c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16409566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16419566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
164294342113SStefano Zampini   if ((diag != 0.0) && cong) {
16439566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1644f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16459566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
164600045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
164765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
164865a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16499566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1650a07cd24cSSatish Balay     }
16519566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16529566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16539c957beeSSatish Balay   } else {
16549566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1655a07cd24cSSatish Balay   }
16569566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16574f9cfa9eSBarry Smith 
16584f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1659f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1660e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1661462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1662e56f5c9eSBarry Smith   }
16633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16640ac07820SSatish Balay }
166572dacd9aSBarry Smith 
166666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1667d71ae5a4SJacob Faibussowitsch {
16686f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
16696497c311SBarry Smith   PetscMPIInt        n, p = 0;
1670131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16716f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16726f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16736f0a72daSMatthew G. Knepley   PetscSF            sf;
16746f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16756f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16766f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16776f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16786f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16796f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16806f0a72daSMatthew G. Knepley 
16816f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16826497c311SBarry Smith   PetscCall(PetscMPIIntCast(A->rmap->n, &n));
16836f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16856f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16876f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16886f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16895f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16905ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16919566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16925ba17502SJed Brown     }
16936f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16946f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16956f0a72daSMatthew G. Knepley   }
16969566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16979566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16986f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16999566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17009566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17019566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
17026f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17039371c9d4SSatish Balay   for (r = 0; r < n; ++r)
17049371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
17056f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17069566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
17074cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
17089566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17099566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17109566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17116f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17129566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17139566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17149566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17159566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17166f0a72daSMatthew G. Knepley   if (x) {
17179566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17189566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17199566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17209566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17216f0a72daSMatthew G. Knepley   }
17229566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17234cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17246f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17256f0a72daSMatthew G. Knepley     row   = lrows[i];
17266f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1727f4f49eeaSPierre Jolivet     aa    = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs);
17286f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17296f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17306f0a72daSMatthew G. Knepley       aa += bs;
17316f0a72daSMatthew G. Knepley     }
17326f0a72daSMatthew G. Knepley   }
17336f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17346f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17356f0a72daSMatthew G. Knepley     row = i / bs;
17366f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17376f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17386f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17396f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1740f4f49eeaSPierre Jolivet           aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k;
174189ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17426f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17436f0a72daSMatthew G. Knepley         }
17446f0a72daSMatthew G. Knepley       }
17456f0a72daSMatthew G. Knepley     }
17466f0a72daSMatthew G. Knepley   }
17476f0a72daSMatthew G. Knepley   if (x) {
17489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17506f0a72daSMatthew G. Knepley   }
17519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17539566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17544f9cfa9eSBarry Smith 
17554f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1756f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17574f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1758462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17594f9cfa9eSBarry Smith   }
17603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17616f0a72daSMatthew G. Knepley }
17626f0a72daSMatthew G. Knepley 
176366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1764d71ae5a4SJacob Faibussowitsch {
1765bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1766d64ed03dSBarry Smith 
1767d64ed03dSBarry Smith   PetscFunctionBegin;
17689566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1770bb5a7306SBarry Smith }
1771bb5a7306SBarry Smith 
17726849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17730ac07820SSatish Balay 
177466976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1775d71ae5a4SJacob Faibussowitsch {
17767fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17777fc3c18eSBarry Smith   Mat          a, b, c, d;
1778ace3abfcSBarry Smith   PetscBool    flg;
17797fc3c18eSBarry Smith 
17807fc3c18eSBarry Smith   PetscFunctionBegin;
17819371c9d4SSatish Balay   a = matA->A;
17829371c9d4SSatish Balay   b = matA->B;
17839371c9d4SSatish Balay   c = matB->A;
17849371c9d4SSatish Balay   d = matB->B;
17857fc3c18eSBarry Smith 
17869566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
178748a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
1788462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17907fc3c18eSBarry Smith }
17917fc3c18eSBarry Smith 
179266976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1793d71ae5a4SJacob Faibussowitsch {
17943c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17953c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17963c896bc6SHong Zhang 
17973c896bc6SHong Zhang   PetscFunctionBegin;
17983c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17993c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18009566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
18013c896bc6SHong Zhang   } else {
18029566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
18039566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
18043c896bc6SHong Zhang   }
18059566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
18063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18073c896bc6SHong Zhang }
1808273d9f13SBarry Smith 
1809d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1810d71ae5a4SJacob Faibussowitsch {
1811001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18124de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18134de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18144de5dceeSHong Zhang 
18154de5dceeSHong Zhang   PetscFunctionBegin;
18169566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18184de5dceeSHong Zhang }
18194de5dceeSHong Zhang 
182066976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1821d71ae5a4SJacob Faibussowitsch {
18224fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18234fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18244fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1825b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18264fe895cdSHong Zhang 
18274fe895cdSHong Zhang   PetscFunctionBegin;
18284fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18294fe895cdSHong Zhang     PetscScalar alpha = a;
18304fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18314fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18329566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1833792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18344fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18354fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18369566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1837792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18389566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1839ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18409566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18414fe895cdSHong Zhang   } else {
18424de5dceeSHong Zhang     Mat       B;
18434de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18469566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18479566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18489566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18499566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18509566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18519566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18529566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18539566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18544de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18559566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18569566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18579566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18589566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18594fe895cdSHong Zhang   }
18603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18614fe895cdSHong Zhang }
18624fe895cdSHong Zhang 
186366976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1864d71ae5a4SJacob Faibussowitsch {
18655f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18665f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18672726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18682726fb6dSPierre Jolivet 
18699566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18709566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18715f80ce2aSJacob Faibussowitsch   }
18723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18732726fb6dSPierre Jolivet }
18742726fb6dSPierre Jolivet 
187566976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1876d71ae5a4SJacob Faibussowitsch {
187799cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187899cafbc1SBarry Smith 
187999cafbc1SBarry Smith   PetscFunctionBegin;
18809566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18819566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188399cafbc1SBarry Smith }
188499cafbc1SBarry Smith 
188566976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1886d71ae5a4SJacob Faibussowitsch {
188799cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188899cafbc1SBarry Smith 
188999cafbc1SBarry Smith   PetscFunctionBegin;
18909566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18919566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189399cafbc1SBarry Smith }
189499cafbc1SBarry Smith 
189566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1896d71ae5a4SJacob Faibussowitsch {
18974aa3045dSJed Brown   IS       iscol_local;
18984aa3045dSJed Brown   PetscInt csize;
18994aa3045dSJed Brown 
19004aa3045dSJed Brown   PetscFunctionBegin;
19019566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1902b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
19039566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
19045f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1905b79d0421SJed Brown   } else {
19069566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1907b79d0421SJed Brown   }
1908fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1909b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19109566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19119566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1912b79d0421SJed Brown   }
19133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19144aa3045dSJed Brown }
191517df9f7cSHong Zhang 
191682094794SBarry Smith /*
191782094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
191882094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19197dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19208f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
192182094794SBarry Smith */
1922fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1923d71ae5a4SJacob Faibussowitsch {
192482094794SBarry Smith   PetscMPIInt  rank, size;
192582094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1926c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
192729dcf524SDmitry Karpeev   Mat          M, Mreuse;
192882094794SBarry Smith   MatScalar   *vwork, *aa;
1929ce94432eSBarry Smith   MPI_Comm     comm;
193029dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
193182094794SBarry Smith   Mat_SeqBAIJ *aij;
193282094794SBarry Smith 
193382094794SBarry Smith   PetscFunctionBegin;
19349566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
193729dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
193829dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19399566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1940864bd19bSPierre Jolivet   if (isrow == iscol) {
1941864bd19bSPierre Jolivet     iscol_new = isrow_new;
1942864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1943864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
194482094794SBarry Smith 
194582094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19469566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19475f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1948fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
194982094794SBarry Smith   } else {
1950fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
195182094794SBarry Smith   }
19529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
195482094794SBarry Smith   /*
195582094794SBarry Smith       m - number of local rows
195682094794SBarry Smith       n - number of columns (same on all processors)
195782094794SBarry Smith       rstart - first row in new global matrix generated
195882094794SBarry Smith   */
19599566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19609566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
196182094794SBarry Smith   m = m / bs;
196282094794SBarry Smith   n = n / bs;
196382094794SBarry Smith 
196482094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
196557508eceSPierre Jolivet     aij = (Mat_SeqBAIJ *)Mreuse->data;
196682094794SBarry Smith     ii  = aij->i;
196782094794SBarry Smith     jj  = aij->j;
196882094794SBarry Smith 
196982094794SBarry Smith     /*
197082094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
197182094794SBarry Smith         portions of the matrix in order to do correct preallocation
197282094794SBarry Smith     */
197382094794SBarry Smith 
197482094794SBarry Smith     /* first get start and end of "diagonal" columns */
197582094794SBarry Smith     if (csize == PETSC_DECIDE) {
19769566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
197782094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
197882094794SBarry Smith         nlocal = m;
197982094794SBarry Smith       } else {
198082094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
198182094794SBarry Smith       }
198282094794SBarry Smith     } else {
198382094794SBarry Smith       nlocal = csize / bs;
198482094794SBarry Smith     }
19859566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
198682094794SBarry Smith     rstart = rend - nlocal;
1987aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
198882094794SBarry Smith 
198982094794SBarry Smith     /* next, compute all the lengths */
19909566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
199182094794SBarry Smith     for (i = 0; i < m; i++) {
199282094794SBarry Smith       jend = ii[i + 1] - ii[i];
199382094794SBarry Smith       olen = 0;
199482094794SBarry Smith       dlen = 0;
199582094794SBarry Smith       for (j = 0; j < jend; j++) {
199682094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
199782094794SBarry Smith         else dlen++;
199882094794SBarry Smith         jj++;
199982094794SBarry Smith       }
200082094794SBarry Smith       olens[i] = olen;
200182094794SBarry Smith       dlens[i] = dlen;
200282094794SBarry Smith     }
20039566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
20049566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
2005fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
20069566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20079566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20089566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
200982094794SBarry Smith   } else {
201082094794SBarry Smith     PetscInt ml, nl;
201182094794SBarry Smith 
201282094794SBarry Smith     M = *newmat;
20139566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20145f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20159566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
201682094794SBarry Smith     /*
201782094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
201882094794SBarry Smith        rather than the slower MatSetValues().
201982094794SBarry Smith     */
202082094794SBarry Smith     M->was_assembled = PETSC_TRUE;
202182094794SBarry Smith     M->assembled     = PETSC_FALSE;
202282094794SBarry Smith   }
20239566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20249566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
202557508eceSPierre Jolivet   aij = (Mat_SeqBAIJ *)Mreuse->data;
202682094794SBarry Smith   ii  = aij->i;
202782094794SBarry Smith   jj  = aij->j;
202882094794SBarry Smith   aa  = aij->a;
202982094794SBarry Smith   for (i = 0; i < m; i++) {
203082094794SBarry Smith     row   = rstart / bs + i;
203182094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20329371c9d4SSatish Balay     cwork = jj;
20338e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20349371c9d4SSatish Balay     vwork = aa;
20358e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20369566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
203782094794SBarry Smith   }
203882094794SBarry Smith 
20399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
204182094794SBarry Smith   *newmat = M;
204282094794SBarry Smith 
204382094794SBarry Smith   /* save submatrix used in processor for next request */
204482094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20459566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20469566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
204782094794SBarry Smith   }
20483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
204982094794SBarry Smith }
205082094794SBarry Smith 
205166976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2052d71ae5a4SJacob Faibussowitsch {
205382094794SBarry Smith   MPI_Comm        comm, pcomm;
2054a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
205582094794SBarry Smith   const PetscInt *rows;
2056dbf0e21dSBarry Smith   PetscMPIInt     size;
2057a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
205882094794SBarry Smith 
205982094794SBarry Smith   PetscFunctionBegin;
20609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
206182094794SBarry Smith   /* make a collective version of 'rowp' */
20629566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
206382094794SBarry Smith   if (pcomm == comm) {
206482094794SBarry Smith     crowp = rowp;
206582094794SBarry Smith   } else {
20669566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20679566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20689566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20699566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
207082094794SBarry Smith   }
20719566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2072a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2075dbf0e21dSBarry Smith   if (size == 1) {
207682094794SBarry Smith     lcolp = colp;
207782094794SBarry Smith   } else {
20789566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
207982094794SBarry Smith   }
20809566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
208175f6568bSJed Brown   /* now we just get the submatrix */
20829566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2083fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2084a0a83eb5SRémi Lacroix   /* clean up */
208548a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
208648a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208882094794SBarry Smith }
208982094794SBarry Smith 
209066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2091d71ae5a4SJacob Faibussowitsch {
20928c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20938c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20948c7482ecSBarry Smith 
20958c7482ecSBarry Smith   PetscFunctionBegin;
209626fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
209726fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20998c7482ecSBarry Smith }
21008c7482ecSBarry Smith 
210166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2102d71ae5a4SJacob Faibussowitsch {
2103f6d58c54SBarry Smith   Mat          B;
2104f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2105f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2106f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2107f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2108f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2109f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2110f6d58c54SBarry Smith 
2111f6d58c54SBarry Smith   PetscFunctionBegin;
21129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21139566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2114f6d58c54SBarry Smith 
21152ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2117ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2119f6d58c54SBarry Smith   displs = recvcounts + size;
2120f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
21216497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i]));
21226497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i]));
2123f6d58c54SBarry Smith   }
21249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21252ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21269566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21279566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21289566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2130f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2131f6d58c54SBarry Smith 
21322ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2133f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2134f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2135f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2136f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2137f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2138f6d58c54SBarry Smith   cnt        = 0;
2139f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2140f6d58c54SBarry Smith     /* put in lower diagonal portion */
2141f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2142f6d58c54SBarry Smith     while (m > 0) {
2143f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2144f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2145f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2146f6d58c54SBarry Smith       m--;
2147f6d58c54SBarry Smith     }
2148f6d58c54SBarry Smith 
2149f6d58c54SBarry Smith     /* put in diagonal portion */
2150ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2151f6d58c54SBarry Smith 
2152f6d58c54SBarry Smith     /* put in upper diagonal portion */
2153ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2154f6d58c54SBarry Smith   }
21555f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2156f6d58c54SBarry Smith 
21572ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2158f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2159f6d58c54SBarry Smith     recvcounts[i] = 0;
2160ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2161f6d58c54SBarry Smith   }
2162f6d58c54SBarry Smith   displs[0] = 0;
2163ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21655804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2166f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21679566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2168f6d58c54SBarry Smith   /* set the b->i indices */
2169f6d58c54SBarry Smith   b->i[0] = 0;
2170ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21719566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21749566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2175f6d58c54SBarry Smith 
2176b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2177f6d58c54SBarry Smith   *newmat = B;
21783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2179f6d58c54SBarry Smith }
2180f6d58c54SBarry Smith 
218166976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2182d71ae5a4SJacob Faibussowitsch {
2183b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2184f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2185b1a666ecSBarry Smith 
2186b1a666ecSBarry Smith   PetscFunctionBegin;
2187b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21889566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21893ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2190b1a666ecSBarry Smith   }
2191b1a666ecSBarry Smith 
219248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21934e980039SJed Brown 
2194b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2195b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21969566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2197b1a666ecSBarry Smith       its--;
2198b1a666ecSBarry Smith     }
2199b1a666ecSBarry Smith 
2200b1a666ecSBarry Smith     while (its--) {
22019566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22029566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2203b1a666ecSBarry Smith 
2204b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22059566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22069566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2207b1a666ecSBarry Smith 
2208b1a666ecSBarry Smith       /* local sweep */
22099566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2210b1a666ecSBarry Smith     }
2211b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2212b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22139566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2214b1a666ecSBarry Smith       its--;
2215b1a666ecSBarry Smith     }
2216b1a666ecSBarry Smith     while (its--) {
22179566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22189566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2219b1a666ecSBarry Smith 
2220b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22219566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22229566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2223b1a666ecSBarry Smith 
2224b1a666ecSBarry Smith       /* local sweep */
22259566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2226b1a666ecSBarry Smith     }
2227b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2228b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2230b1a666ecSBarry Smith       its--;
2231b1a666ecSBarry Smith     }
2232b1a666ecSBarry Smith     while (its--) {
22339566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22349566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2235b1a666ecSBarry Smith 
2236b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22379566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22389566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2239b1a666ecSBarry Smith 
2240b1a666ecSBarry Smith       /* local sweep */
22419566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2242b1a666ecSBarry Smith     }
2243ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2244b1a666ecSBarry Smith 
22459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2247b1a666ecSBarry Smith }
2248b1a666ecSBarry Smith 
224966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2250d71ae5a4SJacob Faibussowitsch {
225147f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2252a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
225347f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
225447f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
225547f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
225647f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
225747f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
225847f7623dSRémi Lacroix   PetscReal   *work;
22596497c311SBarry Smith   PetscMPIInt  iN;
226047f7623dSRémi Lacroix 
226147f7623dSRémi Lacroix   PetscFunctionBegin;
22629566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22639566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2264857cbf51SRichard Tran Mills   if (type == NORM_2) {
226547f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
226647f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226747f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226847f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
226947f7623dSRémi Lacroix           a_val++;
227047f7623dSRémi Lacroix         }
227147f7623dSRémi Lacroix       }
227247f7623dSRémi Lacroix     }
227347f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
227447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227647f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
227747f7623dSRémi Lacroix           b_val++;
227847f7623dSRémi Lacroix         }
227947f7623dSRémi Lacroix       }
228047f7623dSRémi Lacroix     }
2281857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
228247f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228347f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228447f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228547f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
228647f7623dSRémi Lacroix           a_val++;
228747f7623dSRémi Lacroix         }
228847f7623dSRémi Lacroix       }
228947f7623dSRémi Lacroix     }
229047f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229347f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
229447f7623dSRémi Lacroix           b_val++;
229547f7623dSRémi Lacroix         }
229647f7623dSRémi Lacroix       }
229747f7623dSRémi Lacroix     }
2298857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
229947f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
230047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
23026497c311SBarry Smith           PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb;
230347f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*a_val), work[col]);
230447f7623dSRémi Lacroix           a_val++;
230547f7623dSRémi Lacroix         }
230647f7623dSRémi Lacroix       }
230747f7623dSRémi Lacroix     }
230847f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
230947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
231047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
23116497c311SBarry Smith           PetscInt col = garray[b_aij->j[i]] * bs + jb;
231247f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*b_val), work[col]);
231347f7623dSRémi Lacroix           b_val++;
231447f7623dSRémi Lacroix         }
231547f7623dSRémi Lacroix       }
231647f7623dSRémi Lacroix     }
2317857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2318a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2319a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2320a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2321857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2322a873a8cdSSam Reynolds           a_val++;
2323a873a8cdSSam Reynolds         }
2324a873a8cdSSam Reynolds       }
2325a873a8cdSSam Reynolds     }
2326a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2327a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2328a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2329857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2330a873a8cdSSam Reynolds           b_val++;
2331a873a8cdSSam Reynolds         }
2332a873a8cdSSam Reynolds       }
2333a873a8cdSSam Reynolds     }
2334857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2335857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2336857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2337857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2338857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2339857cbf51SRichard Tran Mills           a_val++;
2340857cbf51SRichard Tran Mills         }
2341857cbf51SRichard Tran Mills       }
2342857cbf51SRichard Tran Mills     }
2343857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2344857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2345857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2346857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2347857cbf51SRichard Tran Mills           b_val++;
2348857cbf51SRichard Tran Mills         }
2349857cbf51SRichard Tran Mills       }
2350857cbf51SRichard Tran Mills     }
2351857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
23526497c311SBarry Smith   PetscCall(PetscMPIIntCast(N, &iN));
2353857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
2354462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, iN, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
235547f7623dSRémi Lacroix   } else {
2356462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
235747f7623dSRémi Lacroix   }
23589566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2359857cbf51SRichard Tran Mills   if (type == NORM_2) {
2360a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2361857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2362a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
236347f7623dSRémi Lacroix   }
23643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
236547f7623dSRémi Lacroix }
236647f7623dSRémi Lacroix 
236766976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2368d71ae5a4SJacob Faibussowitsch {
2369bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2370bbead8a2SBarry Smith 
2371bbead8a2SBarry Smith   PetscFunctionBegin;
23729566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23737b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23747b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23757b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2377bbead8a2SBarry Smith }
2378bbead8a2SBarry Smith 
237966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2380d71ae5a4SJacob Faibussowitsch {
23817d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23826f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23837d68702bSBarry Smith 
23847d68702bSBarry Smith   PetscFunctionBegin;
23856f33a894SBarry Smith   if (!Y->preallocated) {
23869566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23876f33a894SBarry Smith   } else if (!aij->nz) {
2388b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23899566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2390b83222d8SBarry Smith     aij->nonew = nonew;
23917d68702bSBarry Smith   }
23929566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23947d68702bSBarry Smith }
23958c7482ecSBarry Smith 
239666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2397d71ae5a4SJacob Faibussowitsch {
23983b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23993b49f96aSBarry Smith 
24003b49f96aSBarry Smith   PetscFunctionBegin;
24015f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
24029566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
24033b49f96aSBarry Smith   if (d) {
24043b49f96aSBarry Smith     PetscInt rstart;
24059566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
24063b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
24073b49f96aSBarry Smith   }
24083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24093b49f96aSBarry Smith }
24103b49f96aSBarry Smith 
241166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2412d71ae5a4SJacob Faibussowitsch {
2413a5b7ff6bSBarry Smith   PetscFunctionBegin;
2414a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2416a5b7ff6bSBarry Smith }
2417a5b7ff6bSBarry Smith 
241817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
241917ea310bSPierre Jolivet {
242017ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
242117ea310bSPierre Jolivet 
242217ea310bSPierre Jolivet   PetscFunctionBegin;
242317ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
242417ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
242517ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
242617ea310bSPierre Jolivet }
242717ea310bSPierre Jolivet 
24283964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2429cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2430cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2431cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
243297304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24337c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24347c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2435f4259b30SLisandro Dalcin                                        NULL,
2436f4259b30SLisandro Dalcin                                        NULL,
2437f4259b30SLisandro Dalcin                                        NULL,
2438f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2439f4259b30SLisandro Dalcin                                        NULL,
2440f4259b30SLisandro Dalcin                                        NULL,
2441b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2442cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
244397304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24447fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2445cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2446cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
244897304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2449cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2450cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2451cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2452d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2453f4259b30SLisandro Dalcin                                        NULL,
2454f4259b30SLisandro Dalcin                                        NULL,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
245726cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2458f4259b30SLisandro Dalcin                                        NULL,
2459f4259b30SLisandro Dalcin                                        NULL,
2460a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2461f4259b30SLisandro Dalcin                                        NULL,
2462d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2463f4259b30SLisandro Dalcin                                        NULL,
2464f4259b30SLisandro Dalcin                                        NULL,
2465f4259b30SLisandro Dalcin                                        NULL,
2466f4259b30SLisandro Dalcin                                        NULL,
2467d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24687dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2469cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2470cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24713c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2472f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2473cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24747d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2475f4259b30SLisandro Dalcin                                        NULL,
24766f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2477f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2478f4259b30SLisandro Dalcin                                        NULL,
2479f4259b30SLisandro Dalcin                                        NULL,
2480f4259b30SLisandro Dalcin                                        NULL,
2481f4259b30SLisandro Dalcin                                        NULL,
248293dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2483f4259b30SLisandro Dalcin                                        NULL,
2484cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
248582094794SBarry Smith                                        MatPermute_MPIBAIJ,
2486cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24877dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2488f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2489f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494f4259b30SLisandro Dalcin                                        NULL,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2503f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2504f4259b30SLisandro Dalcin                                        NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
25115bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2512f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        NULL,
25302726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2531f4259b30SLisandro Dalcin                                        NULL,
2532f4259b30SLisandro Dalcin                                        /*104*/ NULL,
253399cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25348c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2538f4259b30SLisandro Dalcin                                        NULL,
2539f4259b30SLisandro Dalcin                                        NULL,
2540f4259b30SLisandro Dalcin                                        NULL,
25413b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2542d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2543f4259b30SLisandro Dalcin                                        NULL,
25444683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2545f4259b30SLisandro Dalcin                                        NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2548f4259b30SLisandro Dalcin                                        NULL,
2549f4259b30SLisandro Dalcin                                        NULL,
2550f4259b30SLisandro Dalcin                                        NULL,
2551e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2552f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2553a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25543964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2555f4259b30SLisandro Dalcin                                        NULL,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2558f4259b30SLisandro Dalcin                                        NULL,
2559f4259b30SLisandro Dalcin                                        NULL,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2563f4259b30SLisandro Dalcin                                        NULL,
2564f4259b30SLisandro Dalcin                                        NULL,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
256746533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2568f4259b30SLisandro Dalcin                                        NULL,
2569f4259b30SLisandro Dalcin                                        NULL,
2570bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2571f4259b30SLisandro Dalcin                                        NULL,
2572d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2573d70f29a3SPierre Jolivet                                        NULL,
2574d70f29a3SPierre Jolivet                                        NULL,
257599a7f59eSMark Adams                                        NULL,
257699a7f59eSMark Adams                                        NULL,
25777fb60732SBarry Smith                                        NULL,
2578dec0b466SHong Zhang                                        /*150*/ NULL,
2579eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
25804cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIBAIJ,
258142ce410bSJunchao Zhang                                        NULL,
258242ce410bSJunchao Zhang                                        NULL,
25834cc2b5b5SPierre Jolivet                                        NULL};
258479bdfe76SSatish Balay 
2585cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2586c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2587d94109b8SHong Zhang 
258866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2589d71ae5a4SJacob Faibussowitsch {
2590b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2591f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2592f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2593f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2594d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25953bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2596aac34f13SBarry Smith 
2597aac34f13SBarry Smith   PetscFunctionBegin;
25989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
26009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2603d0f46423SBarry Smith   m      = B->rmap->n / bs;
2604d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2605d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2606d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2607b8d659d7SLisandro Dalcin 
26085f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
26099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2610aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2611cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26125f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2613b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
261437cd3c0dSBarry Smith     dlen   = 0;
261537cd3c0dSBarry Smith     olen   = 0;
2616cf12db73SBarry Smith     JJ     = jj + ii[i];
2617b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
261837cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
261937cd3c0dSBarry Smith       else dlen++;
2620aac34f13SBarry Smith       JJ++;
2621aac34f13SBarry Smith     }
262237cd3c0dSBarry Smith     d_nnz[i] = dlen;
262337cd3c0dSBarry Smith     o_nnz[i] = olen;
2624aac34f13SBarry Smith   }
26259566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26269566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2627aac34f13SBarry Smith 
2628b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
262948a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2630b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2631b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2632cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2633cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2634bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2635cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26369566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26373adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26383adadaf3SJed Brown       PetscInt j;
26393adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26403adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26419566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26423adadaf3SJed Brown       }
26433adadaf3SJed Brown     }
2644aac34f13SBarry Smith   }
2645aac34f13SBarry Smith 
26469566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26473bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26483bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26513bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26523bd0feecSPierre Jolivet 
26539566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2655aac34f13SBarry Smith }
2656aac34f13SBarry Smith 
2657aac34f13SBarry Smith /*@C
265811a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2659aac34f13SBarry Smith 
2660d083f849SBarry Smith   Collective
2661aac34f13SBarry Smith 
2662aac34f13SBarry Smith   Input Parameters:
26631c4f3114SJed Brown + B  - the matrix
2664dfb205c3SBarry Smith . bs - the block size
266520f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2666aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2667d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2668aac34f13SBarry Smith 
2669664954b6SBarry Smith   Level: advanced
2670aac34f13SBarry Smith 
267195452b02SPatrick Sanan   Notes:
2672d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2673d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2674d8a51d2aSBarry Smith   called this routine.
2675d8a51d2aSBarry Smith 
267611a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
267711a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26783adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
267911a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26803adadaf3SJed Brown   block column and the second index is over columns within a block.
26813adadaf3SJed Brown 
2682664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2683664954b6SBarry Smith 
26847d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2685aac34f13SBarry Smith @*/
2686d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2687d71ae5a4SJacob Faibussowitsch {
2688aac34f13SBarry Smith   PetscFunctionBegin;
26896ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26906ba663aaSJed Brown   PetscValidType(B, 1);
26916ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2692cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2694aac34f13SBarry Smith }
2695aac34f13SBarry Smith 
2696d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2697d71ae5a4SJacob Faibussowitsch {
2698ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2699535b19f3SBarry Smith   PetscInt     i;
27005d2a9ed1SStefano Zampini   PetscMPIInt  size;
2701a23d5eceSKris Buschelman 
2702a23d5eceSKris Buschelman   PetscFunctionBegin;
2703ad79cf63SBarry Smith   if (B->hash_active) {
2704aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2705ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2706ad79cf63SBarry Smith   }
2707ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
27089566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
27099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27119566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2712899cda47SBarry Smith 
2713a23d5eceSKris Buschelman   if (d_nnz) {
2714ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2715a23d5eceSKris Buschelman   }
2716a23d5eceSKris Buschelman   if (o_nnz) {
2717ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2718a23d5eceSKris Buschelman   }
2719a23d5eceSKris Buschelman 
2720a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2721d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2722d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2723d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2724d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2725a23d5eceSKris Buschelman 
2726ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2727d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2728d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2729d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2730d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2731a23d5eceSKris Buschelman 
2732cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2733eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2734cb7b82ddSBarry Smith #else
27359566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2736cb7b82ddSBarry Smith #endif
27379566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27399566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2740cb7b82ddSBarry Smith 
27419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2742c508b908SBarry Smith 
2743c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27449566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27459566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27469566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27479566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2748c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2749cb7b82ddSBarry Smith 
2750c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2751ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27529566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27539566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27549566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2755c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2756a23d5eceSKris Buschelman 
27579566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27589566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2759526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2760cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2761cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2763a23d5eceSKris Buschelman }
2764a23d5eceSKris Buschelman 
27657087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27667087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27675bf65638SKris Buschelman 
2768d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2769d71ae5a4SJacob Faibussowitsch {
277082094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
277182094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
277282094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
277382094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
277482094794SBarry Smith 
277582094794SBarry Smith   PetscFunctionBegin;
27769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
277782094794SBarry Smith   ii[0] = 0;
277882094794SBarry Smith   for (i = 0; i < M; i++) {
277908401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
278008401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
278182094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27825ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27835ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27849371c9d4SSatish Balay       if (jd[j] == i) {
27859371c9d4SSatish Balay         ii[i + 1]--;
27869371c9d4SSatish Balay         break;
27879371c9d4SSatish Balay       }
27885ee9ba1cSJed Brown     }
278982094794SBarry Smith   }
27909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
279182094794SBarry Smith   cnt = 0;
279282094794SBarry Smith   for (i = 0; i < M; i++) {
279382094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
279482094794SBarry Smith       if (garray[jo[j]] > rstart) break;
279582094794SBarry Smith       jj[cnt++] = garray[jo[j]];
279682094794SBarry Smith     }
279782094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2798ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
279982094794SBarry Smith     }
2800ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
280182094794SBarry Smith   }
28029566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
28033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
280482094794SBarry Smith }
280582094794SBarry Smith 
2806c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
280762471d69SBarry Smith 
2808cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2809b2573a8aSBarry Smith 
2810d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2811d71ae5a4SJacob Faibussowitsch {
281262471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
281385a69837SSatish Balay   Mat_MPIAIJ  *b;
28145f80ce2aSJacob Faibussowitsch   Mat          B;
281562471d69SBarry Smith 
281662471d69SBarry Smith   PetscFunctionBegin;
28175f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
281862471d69SBarry Smith 
28190f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28200f6d62edSLisandro Dalcin     B = *newmat;
28210f6d62edSLisandro Dalcin   } else {
28229566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28239566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28249566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28259566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28280f6d62edSLisandro Dalcin   }
282962471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
283062471d69SBarry Smith 
28310f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28329566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28339566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28340f6d62edSLisandro Dalcin   } else {
28357c612885SStefano Zampini     PetscInt   *garray = a->garray;
28367c612885SStefano Zampini     Mat_SeqAIJ *bB;
28377c612885SStefano Zampini     PetscInt    bs, nnz;
28389566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28399566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28407c612885SStefano Zampini     /* just clear out the data structure */
2841eb14dd14SAlex Lindsay     PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE));
28429566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28439566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28447c612885SStefano Zampini 
28457c612885SStefano Zampini     /* Global numbering for b->B columns */
28467c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28477c612885SStefano Zampini     bs  = A->rmap->bs;
28487c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28497c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28507c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28517c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28527c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28537c612885SStefano Zampini     }
28540f6d62edSLisandro Dalcin   }
28559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28570f6d62edSLisandro Dalcin 
2858511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28599566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
286062471d69SBarry Smith   } else {
286162471d69SBarry Smith     *newmat = B;
286262471d69SBarry Smith   }
28633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
286462471d69SBarry Smith }
286562471d69SBarry Smith 
28660bad9183SKris Buschelman /*MC
2867fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28680bad9183SKris Buschelman 
28690bad9183SKris Buschelman    Options Database Keys:
287011a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28718c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28726679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
287367b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28740bad9183SKris Buschelman 
28750bad9183SKris Buschelman    Level: beginner
28760cd7f59aSBarry Smith 
287711a5261eSBarry Smith    Note:
28785e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
287911a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28800bad9183SKris Buschelman 
28815e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28820bad9183SKris Buschelman M*/
28830bad9183SKris Buschelman 
2884cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2885c0cdd4a1SDahai Guo 
2886d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2887d71ae5a4SJacob Faibussowitsch {
2888273d9f13SBarry Smith   Mat_MPIBAIJ *b;
288994ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2890273d9f13SBarry Smith 
2891273d9f13SBarry Smith   PetscFunctionBegin;
28924dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
289382502324SSatish Balay   B->data      = (void *)b;
2894aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2895273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2896273d9f13SBarry Smith 
2897273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2900273d9f13SBarry Smith 
2901273d9f13SBarry Smith   /* build local table of row and column ownerships */
29029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2903273d9f13SBarry Smith 
2904273d9f13SBarry Smith   /* build cache for off array entries formed */
29059566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
290626fbe8dcSKarl Rupp 
2907273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
29080298fd71SBarry Smith   b->colmap      = NULL;
29090298fd71SBarry Smith   b->garray      = NULL;
2910273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2911273d9f13SBarry Smith 
2912273d9f13SBarry Smith   /* stuff used in block assembly */
2913f4259b30SLisandro Dalcin   b->barray = NULL;
2914273d9f13SBarry Smith 
2915273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2916f4259b30SLisandro Dalcin   b->lvec  = NULL;
2917f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2918273d9f13SBarry Smith 
2919273d9f13SBarry Smith   /* stuff for MatGetRow() */
2920f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2921f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2922273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2923273d9f13SBarry Smith 
2924273d9f13SBarry Smith   /* hash table stuff */
2925f4259b30SLisandro Dalcin   b->ht           = NULL;
2926f4259b30SLisandro Dalcin   b->hd           = NULL;
2927273d9f13SBarry Smith   b->ht_size      = 0;
2928273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2929273d9f13SBarry Smith   b->ht_fact      = 0;
2930273d9f13SBarry Smith   b->ht_total_ct  = 0;
2931273d9f13SBarry Smith   b->ht_insert_ct = 0;
2932273d9f13SBarry Smith 
29337dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29347a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29357a868f3eSHong Zhang 
29369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29397ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29417ea3e4caSstefano_zampini #endif
29429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29499566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
295094ae4db5SBarry Smith 
2951d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29529566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
295394ae4db5SBarry Smith   if (flg) {
295494ae4db5SBarry Smith     PetscReal fact = 1.39;
29559566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29569566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
295794ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29589566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29599566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
296094ae4db5SBarry Smith   }
2961d0609cedSBarry Smith   PetscOptionsEnd();
29623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2963273d9f13SBarry Smith }
2964273d9f13SBarry Smith 
29652920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2966209238afSKris Buschelman /*MC
2967002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2968209238afSKris Buschelman 
296911a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
297011a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2971209238afSKris Buschelman 
2972209238afSKris Buschelman    Options Database Keys:
297311a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2974209238afSKris Buschelman 
2975209238afSKris Buschelman   Level: beginner
2976209238afSKris Buschelman 
297767be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2978209238afSKris Buschelman M*/
2979209238afSKris Buschelman 
29805d83a8b1SBarry Smith /*@
298111a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
298267be906fSBarry Smith   (block compressed row).
2983273d9f13SBarry Smith 
2984c3339decSBarry Smith   Collective
2985273d9f13SBarry Smith 
2986273d9f13SBarry Smith   Input Parameters:
29871c4f3114SJed Brown + B     - the matrix
298811a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
298967be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2990273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2991273d9f13SBarry Smith            submatrix  (same for all local rows)
2992273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2993273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
299467be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
299595742e49SBarry Smith            set it even if it is zero.
2996273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2997273d9f13SBarry Smith            submatrix (same for all local rows).
2998273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2999273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
300067be906fSBarry Smith            each block row) or `NULL`.
3001273d9f13SBarry Smith 
300249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3003273d9f13SBarry Smith 
3004273d9f13SBarry Smith   Options Database Keys:
30058c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
300667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
3007273d9f13SBarry Smith 
300867be906fSBarry Smith   Level: intermediate
300967be906fSBarry Smith 
3010273d9f13SBarry Smith   Notes:
301167be906fSBarry Smith   For good matrix assembly performance
301267be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
301367be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
301467be906fSBarry Smith   performance can be increased by more than a factor of 50.
301567be906fSBarry Smith 
301611a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3017273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith   Storage Information:
3020273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3021273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3022273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3023273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3024273d9f13SBarry Smith 
3025273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
302667be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
302767be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3028273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
302967be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3030273d9f13SBarry Smith 
3031273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3032273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3033273d9f13SBarry Smith 
3034273d9f13SBarry Smith .vb
3035273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3036a4b1a0f6SJed Brown           --------------------------
3037273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3038273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3039273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3040a4b1a0f6SJed Brown           --------------------------
3041273d9f13SBarry Smith .ve
3042273d9f13SBarry Smith 
3043273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3044273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3045273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
304611a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3047273d9f13SBarry Smith 
304867be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
304967be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3050273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
305120f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3052273d9f13SBarry Smith 
305311a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3054aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
305567be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3056aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3057aa95bbe8SBarry Smith 
305867be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3059273d9f13SBarry Smith @*/
3060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3061d71ae5a4SJacob Faibussowitsch {
3062273d9f13SBarry Smith   PetscFunctionBegin;
30636ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30646ba663aaSJed Brown   PetscValidType(B, 1);
30656ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3066cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3068273d9f13SBarry Smith }
3069273d9f13SBarry Smith 
30702920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
30715d83a8b1SBarry Smith /*@
307211a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
307367be906fSBarry Smith   (block compressed row).
307479bdfe76SSatish Balay 
3075d083f849SBarry Smith   Collective
3076db81eaa0SLois Curfman McInnes 
307779bdfe76SSatish Balay   Input Parameters:
3078db81eaa0SLois Curfman McInnes + comm  - MPI communicator
307911a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
308011a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
308111a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
308292e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
308392e8d321SLois Curfman McInnes           y vector for the matrix-vector product y = Ax.
308411a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
308592e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
308692e8d321SLois Curfman McInnes           x vector for the matrix-vector product y = Ax.
308711a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
308811a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
308947a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
309079bdfe76SSatish Balay           submatrix  (same for all local rows)
309147a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
309292e8d321SLois Curfman McInnes           of the in diagonal portion of the local (possibly different for each block
30930298fd71SBarry Smith           row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
309495742e49SBarry Smith           and set it even if it is zero.
309547a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
309679bdfe76SSatish Balay           submatrix (same for all local rows).
309747a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
309892e8d321SLois Curfman McInnes           off-diagonal portion of the local submatrix (possibly different for
30990298fd71SBarry Smith           each block row) or NULL.
310079bdfe76SSatish Balay 
310179bdfe76SSatish Balay   Output Parameter:
310279bdfe76SSatish Balay . A - the matrix
310379bdfe76SSatish Balay 
3104db81eaa0SLois Curfman McInnes   Options Database Keys:
31058c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
310667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
31073ffaccefSLois Curfman McInnes 
310867be906fSBarry Smith   Level: intermediate
310967be906fSBarry Smith 
311067be906fSBarry Smith   Notes:
311177433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
311277433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
311377433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
311477433607SBarry Smith 
311567be906fSBarry Smith   For good matrix assembly performance
311667be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
311767be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
311867be906fSBarry Smith   performance can be increased by more than a factor of 50.
311967be906fSBarry Smith 
312049a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
312149a6f317SBarry Smith 
312247a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
312347a75d0bSBarry Smith 
312479bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
312579bdfe76SSatish Balay   (possibly both).
312679bdfe76SSatish Balay 
312711a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3128be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3129be79a94dSBarry Smith 
3130727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
3131727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
3132727bdf9bSBarry Smith 
313379bdfe76SSatish Balay   Storage Information:
313479bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
313579bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
313679bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
313779bdfe76SSatish Balay   local matrix (a rectangular submatrix).
313879bdfe76SSatish Balay 
313979bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
314079bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
314167be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
314279bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
314367be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
314479bdfe76SSatish Balay 
314579bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
314679bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
314779bdfe76SSatish Balay 
3148db81eaa0SLois Curfman McInnes .vb
3149db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3150a4b1a0f6SJed Brown           --------------------------
3151db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3152db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3153db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3154a4b1a0f6SJed Brown           --------------------------
3155db81eaa0SLois Curfman McInnes .ve
315679bdfe76SSatish Balay 
315779bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
315879bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
315979bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
316011a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
316179bdfe76SSatish Balay 
316267be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
316367be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
316479bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
316520f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
316679bdfe76SSatish Balay 
3167727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`,
3168727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
316979bdfe76SSatish Balay @*/
3170d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3171d71ae5a4SJacob Faibussowitsch {
3172b24ad042SBarry Smith   PetscMPIInt size;
317379bdfe76SSatish Balay 
3174d64ed03dSBarry Smith   PetscFunctionBegin;
31759566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31769566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31779566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3178273d9f13SBarry Smith   if (size > 1) {
31799566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31809566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3181273d9f13SBarry Smith   } else {
31829566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31839566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31843914022bSBarry Smith   }
31853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
318679bdfe76SSatish Balay }
3187026e39d0SSatish Balay 
3188d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3189d71ae5a4SJacob Faibussowitsch {
31900ac07820SSatish Balay   Mat          mat;
31910ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3192b24ad042SBarry Smith   PetscInt     len = 0;
31930ac07820SSatish Balay 
3194d64ed03dSBarry Smith   PetscFunctionBegin;
3195f4259b30SLisandro Dalcin   *newmat = NULL;
31969566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31989566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31997fff6886SHong Zhang 
3200420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3201420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3202420957c1SBarry Smith   if (matin->hash_active) {
3203420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3204420957c1SBarry Smith   } else {
3205d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3206273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
32070ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
32087fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
32097fff6886SHong Zhang 
3210273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3211d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
32120ac07820SSatish Balay     a->bs2        = oldmat->bs2;
32130ac07820SSatish Balay     a->mbs        = oldmat->mbs;
32140ac07820SSatish Balay     a->nbs        = oldmat->nbs;
32150ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
32160ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
32170ac07820SSatish Balay 
32180ac07820SSatish Balay     a->size         = oldmat->size;
32190ac07820SSatish Balay     a->rank         = oldmat->rank;
3220aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3221aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3222f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3223f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
32240ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3225f4259b30SLisandro Dalcin     a->barray       = NULL;
3226899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3227899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3228899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3229899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32300ac07820SSatish Balay 
3231133cdb44SSatish Balay     /* hash table stuff */
3232f4259b30SLisandro Dalcin     a->ht           = NULL;
3233f4259b30SLisandro Dalcin     a->hd           = NULL;
3234133cdb44SSatish Balay     a->ht_size      = 0;
3235133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
323625fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3237133cdb44SSatish Balay     a->ht_total_ct  = 0;
3238133cdb44SSatish Balay     a->ht_insert_ct = 0;
3239133cdb44SSatish Balay 
32409566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32410ac07820SSatish Balay     if (oldmat->colmap) {
3242aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3243eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
324448e59246SSatish Balay #else
32459566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32469566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
324748e59246SSatish Balay #endif
3248f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32494beb1cfeSHong Zhang 
3250f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32519566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32529566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3253f4259b30SLisandro Dalcin     } else a->garray = NULL;
32540ac07820SSatish Balay 
32559566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32569566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32579566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32587fff6886SHong Zhang 
32599566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32609566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3261420957c1SBarry Smith   }
32629566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32630ac07820SSatish Balay   *newmat = mat;
32643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32650ac07820SSatish Balay }
326657b952d6SSatish Balay 
3267618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3268d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3269d71ae5a4SJacob Faibussowitsch {
3270b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3271b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3272b51a4376SLisandro Dalcin   PetscScalar *matvals;
3273b51a4376SLisandro Dalcin 
3274b51a4376SLisandro Dalcin   PetscFunctionBegin;
32759566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3276b51a4376SLisandro Dalcin 
3277b51a4376SLisandro Dalcin   /* read in matrix header */
32789566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32795f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32809371c9d4SSatish Balay   M  = header[1];
32819371c9d4SSatish Balay   N  = header[2];
32829371c9d4SSatish Balay   nz = header[3];
32835f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32845f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32855f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3286b51a4376SLisandro Dalcin 
3287b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32889566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3289618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3290618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3291618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3292b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3293b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3294b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3297b51a4376SLisandro Dalcin 
3298b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32999566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
33005f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
33019566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
33029566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
33039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
33049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
33059371c9d4SSatish Balay   mbs = m / bs;
33069371c9d4SSatish Balay   nbs = n / bs;
3307b51a4376SLisandro Dalcin 
3308b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
33099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
33109566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
33119371c9d4SSatish Balay   rowidxs[0] = 0;
33129371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
3313462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
33145f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3315b51a4376SLisandro Dalcin 
3316b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
33179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
33189566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
33199566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3320b51a4376SLisandro Dalcin 
3321b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3322b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3323b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3324618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3325b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3326b51a4376SLisandro Dalcin 
33279566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33289566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33299566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33309566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3331b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33329566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33339566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3334618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3335618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3336618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3337618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3338618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3339618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3340618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3341b51a4376SLisandro Dalcin             } else {
33429566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3343b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3344b51a4376SLisandro Dalcin             }
3345b51a4376SLisandro Dalcin           }
3346618cc2edSLisandro Dalcin         }
3347618cc2edSLisandro Dalcin       }
3348618cc2edSLisandro Dalcin     }
33499566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33509566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33519566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33529566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33539566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3354b51a4376SLisandro Dalcin   }
3355b51a4376SLisandro Dalcin 
3356b51a4376SLisandro Dalcin   /* store matrix values */
3357b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3358b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33599927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3360b51a4376SLisandro Dalcin   }
3361b51a4376SLisandro Dalcin 
33629566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33639566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3367b51a4376SLisandro Dalcin }
3368b51a4376SLisandro Dalcin 
3369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3370d71ae5a4SJacob Faibussowitsch {
33717f489da9SVaclav Hapla   PetscBool isbinary;
33724683f7a4SShri Abhyankar 
33734683f7a4SShri Abhyankar   PetscFunctionBegin;
33749566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33755f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33769566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33784683f7a4SShri Abhyankar }
33794683f7a4SShri Abhyankar 
3380133cdb44SSatish Balay /*@
338111a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3382133cdb44SSatish Balay 
3383133cdb44SSatish Balay   Input Parameters:
3384a2b725a8SWilliam Gropp + mat  - the matrix
3385a2b725a8SWilliam Gropp - fact - factor
3386133cdb44SSatish Balay 
338711a5261eSBarry Smith   Options Database Key:
338811a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3389fee21e36SBarry Smith 
33908c890885SBarry Smith   Level: advanced
33918c890885SBarry Smith 
339267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3393133cdb44SSatish Balay @*/
3394d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3395d71ae5a4SJacob Faibussowitsch {
33965bf65638SKris Buschelman   PetscFunctionBegin;
3397cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33995bf65638SKris Buschelman }
34005bf65638SKris Buschelman 
3401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3402d71ae5a4SJacob Faibussowitsch {
340325fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3404133cdb44SSatish Balay 
3405133cdb44SSatish Balay   PetscFunctionBegin;
3406133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3407133cdb44SSatish Balay   baij->ht_fact = fact;
34083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3409133cdb44SSatish Balay }
3410f2a5309cSSatish Balay 
3411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3412d71ae5a4SJacob Faibussowitsch {
3413f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3414ab4d48faSStefano Zampini   PetscBool    flg;
34155fd66863SKarl Rupp 
3416f2a5309cSSatish Balay   PetscFunctionBegin;
34179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
34185f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
341921e72a00SBarry Smith   if (Ad) *Ad = a->A;
342021e72a00SBarry Smith   if (Ao) *Ao = a->B;
342121e72a00SBarry Smith   if (colmap) *colmap = a->garray;
34223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3423f2a5309cSSatish Balay }
342485535b8eSBarry Smith 
342585535b8eSBarry Smith /*
342685535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
342785535b8eSBarry Smith */
342885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
342985535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
343085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
343185535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
343285535b8eSBarry Smith #endif
343385535b8eSBarry Smith 
34342920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
343585535b8eSBarry Smith /*@C
343611a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
343785535b8eSBarry Smith 
3438c3339decSBarry Smith   Collective
343985535b8eSBarry Smith 
344085535b8eSBarry Smith   Input Parameters:
3441fe59aa6dSJacob Faibussowitsch + matin  - the matrix
344285535b8eSBarry Smith . min    - number of input rows
344385535b8eSBarry Smith . im     - input rows
344485535b8eSBarry Smith . nin    - number of input columns
344585535b8eSBarry Smith . in     - input columns
344685535b8eSBarry Smith . v      - numerical values input
344711a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
344885535b8eSBarry Smith 
344920f4b53cSBarry Smith   Level: advanced
345020f4b53cSBarry Smith 
3451fe59aa6dSJacob Faibussowitsch   Developer Notes:
345211a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
345385535b8eSBarry Smith 
345467be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
345585535b8eSBarry Smith @*/
345666976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3457d71ae5a4SJacob Faibussowitsch {
345885535b8eSBarry Smith   /* convert input arguments to C version */
345985535b8eSBarry Smith   Mat        mat = *matin;
346085535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
346185535b8eSBarry Smith   InsertMode addv = *addvin;
346285535b8eSBarry Smith 
346385535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
346485535b8eSBarry Smith   const MatScalar *value;
346585535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3466ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
346785535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
346885535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3469d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
347085535b8eSBarry Smith 
347185535b8eSBarry Smith   PetscFunctionBegin;
347285535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
347326fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34745f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34755f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
347685535b8eSBarry Smith   if (mat->assembled) {
347785535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
347885535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
347985535b8eSBarry Smith   }
34809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
348185535b8eSBarry Smith 
348285535b8eSBarry Smith   if (!barray) {
34839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
348485535b8eSBarry Smith     baij->barray = barray;
348585535b8eSBarry Smith   }
348685535b8eSBarry Smith 
348726fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
348826fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
348926fbe8dcSKarl Rupp 
349085535b8eSBarry Smith   for (i = 0; i < m; i++) {
349185535b8eSBarry Smith     if (im[i] < 0) continue;
34926bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
349385535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
349485535b8eSBarry Smith       row = im[i] - rstart;
349585535b8eSBarry Smith       for (j = 0; j < n; j++) {
349685535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
349785535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
349885535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
349985535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
350085535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
350185535b8eSBarry Smith         } else { /* Here a copy is required */
350285535b8eSBarry Smith           if (roworiented) {
350385535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
350485535b8eSBarry Smith           } else {
350585535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
350685535b8eSBarry Smith           }
350785535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3508ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
350985535b8eSBarry Smith           }
351085535b8eSBarry Smith           barray -= bs2;
351185535b8eSBarry Smith         }
351285535b8eSBarry Smith 
351385535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
351485535b8eSBarry Smith           col = in[j] - cstart;
35159566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3516f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3517f7d195e4SLawrence Mitchell           continue;
3518f7d195e4SLawrence Mitchell         } else {
3519f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
352085535b8eSBarry Smith           if (mat->was_assembled) {
352148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
352285535b8eSBarry Smith 
352385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
352485535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35259371c9d4SSatish Balay             {
35269371c9d4SSatish Balay               PetscInt data;
3527eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
352808401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
352985535b8eSBarry Smith             }
353085535b8eSBarry Smith   #else
353108401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
353285535b8eSBarry Smith   #endif
353385535b8eSBarry Smith #endif
353485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3535eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
353685535b8eSBarry Smith             col = (col - 1) / bs;
353785535b8eSBarry Smith #else
353885535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
353985535b8eSBarry Smith #endif
3540f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35419566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
354285535b8eSBarry Smith               col = in[j];
354385535b8eSBarry Smith             }
354426fbe8dcSKarl Rupp           } else col = in[j];
35459566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
354685535b8eSBarry Smith         }
354785535b8eSBarry Smith       }
354885535b8eSBarry Smith     } else {
354985535b8eSBarry Smith       if (!baij->donotstash) {
355085535b8eSBarry Smith         if (roworiented) {
35519566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
355285535b8eSBarry Smith         } else {
35539566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
355485535b8eSBarry Smith         }
355585535b8eSBarry Smith       }
355685535b8eSBarry Smith     }
355785535b8eSBarry Smith   }
355885535b8eSBarry Smith 
355985535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35609566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
356285535b8eSBarry Smith }
3563dfb205c3SBarry Smith 
3564dfb205c3SBarry Smith /*@
3565d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3566dfb205c3SBarry Smith 
3567d083f849SBarry Smith   Collective
3568dfb205c3SBarry Smith 
3569dfb205c3SBarry Smith   Input Parameters:
3570dfb205c3SBarry Smith + comm - MPI communicator
3571dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
357211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3573dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3574d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3575d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3576d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3577d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3578483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3579dfb205c3SBarry Smith . j    - column indices
3580dfb205c3SBarry Smith - a    - matrix values
3581dfb205c3SBarry Smith 
3582dfb205c3SBarry Smith   Output Parameter:
3583dfb205c3SBarry Smith . mat - the matrix
3584dfb205c3SBarry Smith 
3585dfb205c3SBarry Smith   Level: intermediate
3586dfb205c3SBarry Smith 
3587dfb205c3SBarry Smith   Notes:
358867be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3589dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
359011a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3591dfb205c3SBarry Smith 
35923adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35933adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35943adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35953adadaf3SJed Brown   with column-major ordering within blocks.
35963adadaf3SJed Brown 
3597d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3598dfb205c3SBarry Smith 
359967be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
36007d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3601dfb205c3SBarry Smith @*/
3602d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3603d71ae5a4SJacob Faibussowitsch {
3604dfb205c3SBarry Smith   PetscFunctionBegin;
36055f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
36065f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
36079566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
36089566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
36099566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
36109566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
36119566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
36129566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
36139566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
36149566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
36153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3616dfb205c3SBarry Smith }
3617e561ad89SHong Zhang 
3618d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3619d71ae5a4SJacob Faibussowitsch {
3620bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3621bd153df0SHong Zhang   PetscInt    *indx;
3622bd153df0SHong Zhang   PetscScalar *values;
3623e561ad89SHong Zhang 
3624e561ad89SHong Zhang   PetscFunctionBegin;
36259566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3626bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3627bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36282c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3629bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
363077f764caSHong Zhang     PetscMPIInt  rank, size;
3631e561ad89SHong Zhang 
36329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36339371c9d4SSatish Balay     mbs = m / bs;
36349371c9d4SSatish Balay     Nbs = N / cbs;
363548a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3636da91a574SPierre Jolivet     nbs = n / cbs;
3637e561ad89SHong Zhang 
36389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3639d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
364077f764caSHong Zhang 
36419566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
364377f764caSHong Zhang     if (rank == size - 1) {
364477f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36455f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
364677f764caSHong Zhang     }
364777f764caSHong Zhang 
3648d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3649bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36509566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3651647a6520SHong Zhang       nnz = nnz / bs;
3652647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36539566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36549566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3655e561ad89SHong Zhang     }
36569566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3657e561ad89SHong Zhang 
36589566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36599566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36609566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36619566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36629566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36639566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3664d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36659566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3666e561ad89SHong Zhang   }
3667e561ad89SHong Zhang 
3668bd153df0SHong Zhang   /* numeric phase */
36699566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36709566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3671e561ad89SHong Zhang 
3672e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36739566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3674e561ad89SHong Zhang     Ii = i + rstart;
36759566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36769566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3677e561ad89SHong Zhang   }
36789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3681e561ad89SHong Zhang }
3682