1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 61*db161fc6SPierre Jolivet PetscScalar *vv; 624e879edeSHong Zhang Vec vB, vA; 63*db161fc6SPierre Jolivet const PetscScalar *va, *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 69*db161fc6SPierre Jolivet PetscCall(VecGetArrayRead(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 91*db161fc6SPierre Jolivet PetscCall(VecRestoreArrayWrite(v, &vv)); 92*db161fc6SPierre Jolivet PetscCall(VecRestoreArrayRead(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101c7b600bfSPierre Jolivet { 102c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103c7b600bfSPierre Jolivet Vec vB, vA; 104c7b600bfSPierre Jolivet 105c7b600bfSPierre Jolivet PetscFunctionBegin; 106c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115c7b600bfSPierre Jolivet } 116c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25257508eceSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 25757508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 29457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 461eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 462b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 46348e59246SSatish Balay #else 464b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 46548e59246SSatish Balay #endif 466f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4679566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 468ab26458aSBarry Smith col = in[j]; 4695f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 470db4deed7SKarl Rupp } else col = in[j]; 4719566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 472ab26458aSBarry Smith } 473ab26458aSBarry Smith } 474d64ed03dSBarry Smith } else { 4755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 476ab26458aSBarry Smith if (!baij->donotstash) { 477ff2fd236SBarry Smith if (roworiented) { 4789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 479ff2fd236SBarry Smith } else { 4809566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 481ff2fd236SBarry Smith } 482abef11f7SSatish Balay } 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486ab26458aSBarry Smith } 4876fa18ffdSBarry Smith 4880bdbc534SSatish Balay #define HASH_KEY 0.6180339887 489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 493d71ae5a4SJacob Faibussowitsch { 4940bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 495ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 496b24ad042SBarry Smith PetscInt i, j, row, col; 497d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 498d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 499d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 500329f5518SBarry Smith PetscReal tmp; 5013eda8832SBarry Smith MatScalar **HD = baij->hd, value; 502b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5030bdbc534SSatish Balay 5040bdbc534SSatish Balay PetscFunctionBegin; 5050bdbc534SSatish Balay for (i = 0; i < m; i++) { 50676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5075f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5085f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50976bd3646SJed Brown } 5100bdbc534SSatish Balay row = im[i]; 511c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5120bdbc534SSatish Balay for (j = 0; j < n; j++) { 5130bdbc534SSatish Balay col = in[j]; 514db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 515db4deed7SKarl Rupp else value = v[i + j * m]; 516b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 517c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 518c2760754SSatish Balay h1 = HASH(size, key, tmp); 5190bdbc534SSatish Balay 520c2760754SSatish Balay idx = h1; 52176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 522187ce0cbSSatish Balay insert_ct++; 523187ce0cbSSatish Balay total_ct++; 524187ce0cbSSatish Balay if (HT[idx] != key) { 525fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 526187ce0cbSSatish Balay if (idx == size) { 527fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5285f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 529187ce0cbSSatish Balay } 530187ce0cbSSatish Balay } 53176bd3646SJed Brown } else if (HT[idx] != key) { 532fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 533c2760754SSatish Balay if (idx == size) { 534fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 594fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 595187ce0cbSSatish Balay if (idx == size) { 596fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 601fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 602c2760754SSatish Balay if (idx == size) { 603fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6045f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 605c2760754SSatish Balay } 606c2760754SSatish Balay } 607c2760754SSatish Balay baij_a = HD[idx]; 6080bdbc534SSatish Balay if (roworiented) { 609c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 610187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 611187ce0cbSSatish Balay value = v_t; 612187ce0cbSSatish Balay v_t += bs; 613fef45726SSatish Balay if (addv == ADD_VALUES) { 614c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 615ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 616b4cc0f5aSSatish Balay } 617fef45726SSatish Balay } else { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 626ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 627fef45726SSatish Balay } 628fef45726SSatish Balay } else { 629fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 631b4cc0f5aSSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } else { 6360bdbc534SSatish Balay if (!baij->donotstash) { 6370bdbc534SSatish Balay if (roworiented) { 6389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6390bdbc534SSatish Balay } else { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } 6420bdbc534SSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 64576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 646abf3b562SBarry Smith baij->ht_total_ct += total_ct; 647abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64876bd3646SJed Brown } 6493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500bdbc534SSatish Balay } 651133cdb44SSatish Balay 65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 653d71ae5a4SJacob Faibussowitsch { 654d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 655d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 656d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 657d6de1c52SSatish Balay 658133cdb44SSatish Balay PetscFunctionBegin; 659d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66054c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66154c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 662d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 663d6de1c52SSatish Balay row = idxm[i] - bsrstart; 664d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66554c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66654c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 667d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 668d6de1c52SSatish Balay col = idxn[j] - bscstart; 6699566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 670d64ed03dSBarry Smith } else { 67148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 673eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 674fa46199cSSatish Balay data--; 67548e59246SSatish Balay #else 67648e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67748e59246SSatish Balay #endif 67848e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 679d9d09a02SSatish Balay else { 68048e59246SSatish Balay col = data + idxn[j] % bs; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay } 684d6de1c52SSatish Balay } 685f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 686d6de1c52SSatish Balay } 6873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 688d6de1c52SSatish Balay } 689d6de1c52SSatish Balay 69066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 691d71ae5a4SJacob Faibussowitsch { 692d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 693d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 694d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 695329f5518SBarry Smith PetscReal sum = 0.0; 6963eda8832SBarry Smith MatScalar *v; 697d6de1c52SSatish Balay 698d64ed03dSBarry Smith PetscFunctionBegin; 699d6de1c52SSatish Balay if (baij->size == 1) { 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 701d6de1c52SSatish Balay } else { 702d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 703d6de1c52SSatish Balay v = amat->a; 7048a62d963SHong Zhang nz = amat->nz * bs2; 7058a62d963SHong Zhang for (i = 0; i < nz; i++) { 7069371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7079371c9d4SSatish Balay v++; 708d6de1c52SSatish Balay } 709d6de1c52SSatish Balay v = bmat->a; 7108a62d963SHong Zhang nz = bmat->nz * bs2; 7118a62d963SHong Zhang for (i = 0; i < nz; i++) { 7129371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7139371c9d4SSatish Balay v++; 714d6de1c52SSatish Balay } 715462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7168f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7178a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7188a62d963SHong Zhang PetscReal *tmp, *tmp2; 719899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7206497c311SBarry Smith PetscMPIInt iN; 7216497c311SBarry Smith 7229566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7249371c9d4SSatish Balay v = amat->a; 7259371c9d4SSatish Balay jj = amat->j; 7268a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7278a62d963SHong Zhang for (j = 0; j < bs; j++) { 7288a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7298a62d963SHong Zhang for (row = 0; row < bs; row++) { 7309371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7319371c9d4SSatish Balay v++; 7328a62d963SHong Zhang } 7338a62d963SHong Zhang } 7348a62d963SHong Zhang jj++; 7358a62d963SHong Zhang } 7369371c9d4SSatish Balay v = bmat->a; 7379371c9d4SSatish Balay jj = bmat->j; 7388a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7398a62d963SHong Zhang for (j = 0; j < bs; j++) { 7408a62d963SHong Zhang col = bs * garray[*jj] + j; 7418a62d963SHong Zhang for (row = 0; row < bs; row++) { 7429371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7439371c9d4SSatish Balay v++; 7448a62d963SHong Zhang } 7458a62d963SHong Zhang } 7468a62d963SHong Zhang jj++; 7478a62d963SHong Zhang } 7486497c311SBarry Smith PetscCall(PetscMPIIntCast(mat->cmap->N, &iN)); 749462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7508a62d963SHong Zhang *nrm = 0.0; 751d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7528a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7538a62d963SHong Zhang } 7549566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7559566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7568a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 757577dd1f9SKris Buschelman PetscReal *sums; 7589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7598a62d963SHong Zhang sum = 0.0; 7608a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7618a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7628a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7638a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7648a62d963SHong Zhang for (i = 0; i < nz; i++) { 7658a62d963SHong Zhang for (col = 0; col < bs; col++) { 7668a62d963SHong Zhang for (row = 0; row < bs; row++) { 7679371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7689371c9d4SSatish Balay v++; 7698a62d963SHong Zhang } 7708a62d963SHong Zhang } 7718a62d963SHong Zhang } 7728a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7738a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7748a62d963SHong Zhang for (i = 0; i < nz; i++) { 7758a62d963SHong Zhang for (col = 0; col < bs; col++) { 7768a62d963SHong Zhang for (row = 0; row < bs; row++) { 7779371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7789371c9d4SSatish Balay v++; 7798a62d963SHong Zhang } 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 7828a62d963SHong Zhang for (row = 0; row < bs; row++) { 7838a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7848a62d963SHong Zhang } 7858a62d963SHong Zhang } 786462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7879566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 788ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 789d64ed03dSBarry Smith } 7903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 791d6de1c52SSatish Balay } 79257b952d6SSatish Balay 793fef45726SSatish Balay /* 794fef45726SSatish Balay Creates the hash table, and sets the table 795fef45726SSatish Balay This table is created only once. 796fef45726SSatish Balay If new entried need to be added to the matrix 797fef45726SSatish Balay then the hash table has to be destroyed and 798fef45726SSatish Balay recreated. 799fef45726SSatish Balay */ 80066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 801d71ae5a4SJacob Faibussowitsch { 802596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 803596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 804596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 805b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 806fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 807899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 808b24ad042SBarry Smith PetscInt *HT, key; 8093eda8832SBarry Smith MatScalar **HD; 810329f5518SBarry Smith PetscReal tmp; 8116cf91177SBarry Smith #if defined(PETSC_USE_INFO) 812b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8134a15367fSSatish Balay #endif 814fef45726SSatish Balay 815d64ed03dSBarry Smith PetscFunctionBegin; 8163ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 817fef45726SSatish Balay 818fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 819fca92195SBarry Smith ht_size = baij->ht_size; 8200bdbc534SSatish Balay 821fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8229566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 823b9e4cc15SSatish Balay HD = baij->hd; 824a07cd24cSSatish Balay HT = baij->ht; 825b9e4cc15SSatish Balay 826596b8d2eSBarry Smith /* Loop Over A */ 8270bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 828596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8290bdbc534SSatish Balay row = i + rstart; 8300bdbc534SSatish Balay col = aj[j] + cstart; 831596b8d2eSBarry Smith 832187ce0cbSSatish Balay key = row * Nbs + col + 1; 833fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 834fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 835fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 836fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 837fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 838596b8d2eSBarry Smith break; 8396cf91177SBarry Smith #if defined(PETSC_USE_INFO) 840187ce0cbSSatish Balay } else { 841187ce0cbSSatish Balay ct++; 842187ce0cbSSatish Balay #endif 843596b8d2eSBarry Smith } 844187ce0cbSSatish Balay } 8456cf91177SBarry Smith #if defined(PETSC_USE_INFO) 846187ce0cbSSatish Balay if (k > max) max = k; 847187ce0cbSSatish Balay #endif 848596b8d2eSBarry Smith } 849596b8d2eSBarry Smith } 850596b8d2eSBarry Smith /* Loop Over B */ 8510bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 852596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8530bdbc534SSatish Balay row = i + rstart; 8540bdbc534SSatish Balay col = garray[bj[j]]; 855187ce0cbSSatish Balay key = row * Nbs + col + 1; 856fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 857fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 858fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 859fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 860fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 861596b8d2eSBarry Smith break; 8626cf91177SBarry Smith #if defined(PETSC_USE_INFO) 863187ce0cbSSatish Balay } else { 864187ce0cbSSatish Balay ct++; 865187ce0cbSSatish Balay #endif 866596b8d2eSBarry Smith } 867187ce0cbSSatish Balay } 8686cf91177SBarry Smith #if defined(PETSC_USE_INFO) 869187ce0cbSSatish Balay if (k > max) max = k; 870187ce0cbSSatish Balay #endif 871596b8d2eSBarry Smith } 872596b8d2eSBarry Smith } 873596b8d2eSBarry Smith 874596b8d2eSBarry Smith /* Print Summary */ 8756cf91177SBarry Smith #if defined(PETSC_USE_INFO) 876fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87726fbe8dcSKarl Rupp if (HT[i]) j++; 878c38d4ed2SBarry Smith } 8799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 880187ce0cbSSatish Balay #endif 8813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 882596b8d2eSBarry Smith } 88357b952d6SSatish Balay 88466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 885d71ae5a4SJacob Faibussowitsch { 886bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 887b24ad042SBarry Smith PetscInt nstash, reallocs; 888bbb85fb3SSatish Balay 889bbb85fb3SSatish Balay PetscFunctionBegin; 8903ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 891bbb85fb3SSatish Balay 8929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8949566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8959566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8969566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8979566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 899bbb85fb3SSatish Balay } 900bbb85fb3SSatish Balay 90166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 902d71ae5a4SJacob Faibussowitsch { 903bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90491c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 905b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 906e44c0bd4SBarry Smith PetscInt *row, *col; 907ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9083eda8832SBarry Smith MatScalar *val; 909b24ad042SBarry Smith PetscMPIInt n; 910bbb85fb3SSatish Balay 911bbb85fb3SSatish Balay PetscFunctionBegin; 9125fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9134cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 914a2d1c673SSatish Balay while (1) { 9159566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 916a2d1c673SSatish Balay if (!flg) break; 917a2d1c673SSatish Balay 918bbb85fb3SSatish Balay for (i = 0; i < n;) { 919bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92026fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92126fbe8dcSKarl Rupp if (row[j] != rstart) break; 92226fbe8dcSKarl Rupp } 923bbb85fb3SSatish Balay if (j < n) ncols = j - i; 924bbb85fb3SSatish Balay else ncols = n - i; 925bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9269566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 927bbb85fb3SSatish Balay i = j; 928bbb85fb3SSatish Balay } 929bbb85fb3SSatish Balay } 9309566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 931a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9325e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 933a2d1c673SSatish Balay restore the original flags */ 934a2d1c673SSatish Balay r1 = baij->roworiented; 935a2d1c673SSatish Balay r2 = a->roworiented; 93691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93726fbe8dcSKarl Rupp 9387c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9397c922b88SBarry Smith a->roworiented = PETSC_FALSE; 940f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 941a2d1c673SSatish Balay while (1) { 9429566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 943a2d1c673SSatish Balay if (!flg) break; 944a2d1c673SSatish Balay 945a2d1c673SSatish Balay for (i = 0; i < n;) { 946a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94726fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94826fbe8dcSKarl Rupp if (row[j] != rstart) break; 94926fbe8dcSKarl Rupp } 950a2d1c673SSatish Balay if (j < n) ncols = j - i; 951a2d1c673SSatish Balay else ncols = n - i; 9529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 953a2d1c673SSatish Balay i = j; 954a2d1c673SSatish Balay } 955a2d1c673SSatish Balay } 9569566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95726fbe8dcSKarl Rupp 958a2d1c673SSatish Balay baij->roworiented = r1; 959a2d1c673SSatish Balay a->roworiented = r2; 9605e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 961bbb85fb3SSatish Balay } 962bbb85fb3SSatish Balay 9639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 965bbb85fb3SSatish Balay 966bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9676aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 968bbb85fb3SSatish Balay /* 969bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 970bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 971bbb85fb3SSatish Balay */ 972bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 973462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97448a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 975bbb85fb3SSatish Balay } 976bbb85fb3SSatish Balay 97748a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 980bbb85fb3SSatish Balay 9816cf91177SBarry Smith #if defined(PETSC_USE_INFO) 982bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9839566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98426fbe8dcSKarl Rupp 985bbb85fb3SSatish Balay baij->ht_total_ct = 0; 986bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 987bbb85fb3SSatish Balay } 988bbb85fb3SSatish Balay #endif 989bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9909566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99126fbe8dcSKarl Rupp 992bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 993bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 994bbb85fb3SSatish Balay } 995bbb85fb3SSatish Balay 9969566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99726fbe8dcSKarl Rupp 998f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9994f9cfa9eSBarry Smith 10004f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 1001f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 1002e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 1003462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1004e56f5c9eSBarry Smith } 10053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1006bbb85fb3SSatish Balay } 100757b952d6SSatish Balay 10087da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10099804daf3SBarry Smith #include <petscdraw.h> 1010d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1011d71ae5a4SJacob Faibussowitsch { 101257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10137da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1014d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1015ace3abfcSBarry Smith PetscBool iascii, isdraw; 1016b0a32e0cSBarry Smith PetscViewer sviewer; 1017f3ef73ceSBarry Smith PetscViewerFormat format; 101857b952d6SSatish Balay 1019d64ed03dSBarry Smith PetscFunctionBegin; 10209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 102232077d6dSBarry Smith if (iascii) { 10239566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1024456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10254e220ebcSLois Curfman McInnes MatInfo info; 10269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10299371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10309371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10319566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10339566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10389566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1040fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104304929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104557b952d6SSatish Balay } 104657b952d6SSatish Balay } 104757b952d6SSatish Balay 10480f5bd95cSBarry Smith if (isdraw) { 1049b0a32e0cSBarry Smith PetscDraw draw; 1050ace3abfcSBarry Smith PetscBool isnull; 10519566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10529566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10533ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105457b952d6SSatish Balay } 105557b952d6SSatish Balay 10567da1fb6eSBarry Smith { 105757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105857b952d6SSatish Balay Mat A; 105957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1060d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10613eda8832SBarry Smith MatScalar *a; 10623e219373SBarry Smith const char *matname; 106357b952d6SSatish Balay 1064f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1065f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10669566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1067dd400576SPatrick Sanan if (rank == 0) { 10689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1069d64ed03dSBarry Smith } else { 10709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 107157b952d6SSatish Balay } 10729566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10739566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10749566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107557b952d6SSatish Balay 107657b952d6SSatish Balay /* copy over the A part */ 107757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10789371c9d4SSatish Balay ai = Aloc->i; 10799371c9d4SSatish Balay aj = Aloc->j; 10809371c9d4SSatish Balay a = Aloc->a; 10819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 108257b952d6SSatish Balay 108357b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1084899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108657b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1087899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108857b952d6SSatish Balay for (k = 0; k < bs; k++) { 10899566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10909371c9d4SSatish Balay col++; 10919371c9d4SSatish Balay a += bs; 109257b952d6SSatish Balay } 109357b952d6SSatish Balay } 109457b952d6SSatish Balay } 109557b952d6SSatish Balay /* copy over the B part */ 109657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10979371c9d4SSatish Balay ai = Aloc->i; 10989371c9d4SSatish Balay aj = Aloc->j; 10999371c9d4SSatish Balay a = Aloc->a; 110057b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1101899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 110226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 110357b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110457b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110557b952d6SSatish Balay for (k = 0; k < bs; k++) { 11069566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11079371c9d4SSatish Balay col++; 11089371c9d4SSatish Balay a += bs; 110957b952d6SSatish Balay } 111057b952d6SSatish Balay } 111157b952d6SSatish Balay } 11129566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111555843e3eSBarry Smith /* 111655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1117b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111855843e3eSBarry Smith */ 11199566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 112023a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1121dd400576SPatrick Sanan if (rank == 0) { 1122f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1123f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 112457b952d6SSatish Balay } 11259566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112757b952d6SSatish Balay } 11283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112957b952d6SSatish Balay } 113057b952d6SSatish Balay 1131618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1132d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1133d71ae5a4SJacob Faibussowitsch { 1134b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1135b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1136b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1137b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113817a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 11396497c311SBarry Smith PetscCount nz, hnz; 1140b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1141b51a4376SLisandro Dalcin PetscScalar *matvals; 114217a3732bSBarry Smith PetscMPIInt rank; 1143660746e0SBarry Smith 1144660746e0SBarry Smith PetscFunctionBegin; 11459566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1146b51a4376SLisandro Dalcin 1147b51a4376SLisandro Dalcin M = mat->rmap->N; 1148b51a4376SLisandro Dalcin N = mat->cmap->N; 1149b51a4376SLisandro Dalcin m = mat->rmap->n; 1150b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1151b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1152b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1153b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1154b51a4376SLisandro Dalcin 1155b51a4376SLisandro Dalcin /* write matrix header */ 1156660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11579371c9d4SSatish Balay header[1] = M; 11589371c9d4SSatish Balay header[2] = N; 11596497c311SBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 116017a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 116117a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11629566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1163660746e0SBarry Smith 1164b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1166b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11679371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11689566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11699566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1170660746e0SBarry Smith 1171b51a4376SLisandro Dalcin /* fill in and store column indices */ 11729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1173b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1174b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1175b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1176b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11779371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1178660746e0SBarry Smith } 1179b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11809371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1181b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11829371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1183660746e0SBarry Smith } 1184660746e0SBarry Smith } 11856497c311SBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz); 11869566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11879566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1188660746e0SBarry Smith 1189b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1191b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1192b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1193b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1194b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11959371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1196660746e0SBarry Smith } 1197b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11989371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1199b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 12009371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1201660746e0SBarry Smith } 1202b51a4376SLisandro Dalcin } 12039566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12049566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1205660746e0SBarry Smith 1206b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12079566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1209660746e0SBarry Smith } 1210660746e0SBarry Smith 1211d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1212d71ae5a4SJacob Faibussowitsch { 1213ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121457b952d6SSatish Balay 1215d64ed03dSBarry Smith PetscFunctionBegin; 12169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1220660746e0SBarry Smith if (iascii || isdraw || issocket) { 12219566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12221baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122457b952d6SSatish Balay } 122557b952d6SSatish Balay 122666976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1227d71ae5a4SJacob Faibussowitsch { 1228cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1229b24ad042SBarry Smith PetscInt nt; 1230cee3aa6bSSatish Balay 1231d64ed03dSBarry Smith PetscFunctionBegin; 12329566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12335f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12349566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1235da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12379566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12399566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1241cee3aa6bSSatish Balay } 1242cee3aa6bSSatish Balay 124366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1244d71ae5a4SJacob Faibussowitsch { 1245cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1246d64ed03dSBarry Smith 1247d64ed03dSBarry Smith PetscFunctionBegin; 12489566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12499566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12509566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1253cee3aa6bSSatish Balay } 1254cee3aa6bSSatish Balay 125566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1256d71ae5a4SJacob Faibussowitsch { 1257cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1258cee3aa6bSSatish Balay 1259d64ed03dSBarry Smith PetscFunctionBegin; 1260cee3aa6bSSatish Balay /* do nondiagonal part */ 12619566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1262cee3aa6bSSatish Balay /* do local part */ 12639566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1264e4a140f6SJunchao Zhang /* add partial results together */ 12659566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12669566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1268cee3aa6bSSatish Balay } 1269cee3aa6bSSatish Balay 127066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1271d71ae5a4SJacob Faibussowitsch { 1272cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1273cee3aa6bSSatish Balay 1274d64ed03dSBarry Smith PetscFunctionBegin; 1275cee3aa6bSSatish Balay /* do nondiagonal part */ 12769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1277cee3aa6bSSatish Balay /* do local part */ 12789566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1279e4a140f6SJunchao Zhang /* add partial results together */ 12809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1283cee3aa6bSSatish Balay } 1284cee3aa6bSSatish Balay 1285cee3aa6bSSatish Balay /* 1286cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1287cee3aa6bSSatish Balay diagonal block 1288cee3aa6bSSatish Balay */ 128966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1290d71ae5a4SJacob Faibussowitsch { 1291d64ed03dSBarry Smith PetscFunctionBegin; 12925f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12939566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1295cee3aa6bSSatish Balay } 1296cee3aa6bSSatish Balay 129766976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1298d71ae5a4SJacob Faibussowitsch { 1299cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1300d64ed03dSBarry Smith 1301d64ed03dSBarry Smith PetscFunctionBegin; 13029566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13039566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1305cee3aa6bSSatish Balay } 1306026e39d0SSatish Balay 1307d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1308d71ae5a4SJacob Faibussowitsch { 1309acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 131087828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1311d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1312d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1313899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1314acdf5bf4SSatish Balay 1315d64ed03dSBarry Smith PetscFunctionBegin; 13165f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13175f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1318acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1319acdf5bf4SSatish Balay 1320acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1321acdf5bf4SSatish Balay /* 1322acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1323acdf5bf4SSatish Balay */ 1324acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1325b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1326bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1327acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132826fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1329acdf5bf4SSatish Balay } 13309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1331acdf5bf4SSatish Balay } 1332d9d09a02SSatish Balay lrow = row - brstart; 1333acdf5bf4SSatish Balay 13349371c9d4SSatish Balay pvA = &vworkA; 13359371c9d4SSatish Balay pcA = &cworkA; 13369371c9d4SSatish Balay pvB = &vworkB; 13379371c9d4SSatish Balay pcB = &cworkB; 13389371c9d4SSatish Balay if (!v) { 13399371c9d4SSatish Balay pvA = NULL; 13409371c9d4SSatish Balay pvB = NULL; 13419371c9d4SSatish Balay } 13429371c9d4SSatish Balay if (!idx) { 13439371c9d4SSatish Balay pcA = NULL; 13449371c9d4SSatish Balay if (!v) pcB = NULL; 13459371c9d4SSatish Balay } 13469566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13479566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1348acdf5bf4SSatish Balay nztot = nzA + nzB; 1349acdf5bf4SSatish Balay 1350acdf5bf4SSatish Balay cmap = mat->garray; 1351acdf5bf4SSatish Balay if (v || idx) { 1352acdf5bf4SSatish Balay if (nztot) { 1353acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1354b24ad042SBarry Smith PetscInt imark = -1; 1355acdf5bf4SSatish Balay if (v) { 1356acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1357acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1358d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1359acdf5bf4SSatish Balay else break; 1360acdf5bf4SSatish Balay } 1361acdf5bf4SSatish Balay imark = i; 1362acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1363acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1364acdf5bf4SSatish Balay } 1365acdf5bf4SSatish Balay if (idx) { 1366acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1367acdf5bf4SSatish Balay if (imark > -1) { 1368ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1369acdf5bf4SSatish Balay } else { 1370acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 137126fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1372acdf5bf4SSatish Balay else break; 1373acdf5bf4SSatish Balay } 1374acdf5bf4SSatish Balay imark = i; 1375acdf5bf4SSatish Balay } 1376d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1377d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1378acdf5bf4SSatish Balay } 1379d64ed03dSBarry Smith } else { 1380f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1381f4259b30SLisandro Dalcin if (v) *v = NULL; 1382d212a18eSSatish Balay } 1383acdf5bf4SSatish Balay } 1384acdf5bf4SSatish Balay *nz = nztot; 13859566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13869566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1388acdf5bf4SSatish Balay } 1389acdf5bf4SSatish Balay 1390d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1391d71ae5a4SJacob Faibussowitsch { 1392acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1393d64ed03dSBarry Smith 1394d64ed03dSBarry Smith PetscFunctionBegin; 13955f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1396acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398acdf5bf4SSatish Balay } 1399acdf5bf4SSatish Balay 140066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1401d71ae5a4SJacob Faibussowitsch { 140258667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1403d64ed03dSBarry Smith 1404d64ed03dSBarry Smith PetscFunctionBegin; 14059566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14069566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140858667388SSatish Balay } 14090ac07820SSatish Balay 141066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1411d71ae5a4SJacob Faibussowitsch { 14124e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14134e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14143966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14150ac07820SSatish Balay 1416d64ed03dSBarry Smith PetscFunctionBegin; 1417d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141826fbe8dcSKarl Rupp 14199566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 142026fbe8dcSKarl Rupp 14219371c9d4SSatish Balay isend[0] = info->nz_used; 14229371c9d4SSatish Balay isend[1] = info->nz_allocated; 14239371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14249371c9d4SSatish Balay isend[3] = info->memory; 14259371c9d4SSatish Balay isend[4] = info->mallocs; 142626fbe8dcSKarl Rupp 14279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142826fbe8dcSKarl Rupp 14299371c9d4SSatish Balay isend[0] += info->nz_used; 14309371c9d4SSatish Balay isend[1] += info->nz_allocated; 14319371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14329371c9d4SSatish Balay isend[3] += info->memory; 14339371c9d4SSatish Balay isend[4] += info->mallocs; 143426fbe8dcSKarl Rupp 14350ac07820SSatish Balay if (flag == MAT_LOCAL) { 14364e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14374e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14384e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14394e220ebcSLois Curfman McInnes info->memory = isend[3]; 14404e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14410ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1442462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 144326fbe8dcSKarl Rupp 14444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14490ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1450462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 145126fbe8dcSKarl Rupp 14524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145798921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14584e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14594e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14604e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14620ac07820SSatish Balay } 14630ac07820SSatish Balay 146466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1465d71ae5a4SJacob Faibussowitsch { 146658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146758667388SSatish Balay 1468d64ed03dSBarry Smith PetscFunctionBegin; 146912c028f9SKris Buschelman switch (op) { 1470512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1473a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147543674050SBarry Smith MatCheckPreallocated(A, 1); 14769566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147812c028f9SKris Buschelman break; 147912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148043674050SBarry Smith MatCheckPreallocated(A, 1); 14814e0d8c25SBarry Smith a->roworiented = flg; 148226fbe8dcSKarl Rupp 14839566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14849566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148512c028f9SKris Buschelman break; 14868c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1487d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1488d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1489d71ae5a4SJacob Faibussowitsch break; 1490d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1491d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1492d71ae5a4SJacob Faibussowitsch break; 149312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14944e0d8c25SBarry Smith a->ht_flag = flg; 1495abf3b562SBarry Smith a->ht_fact = 1.39; 149612c028f9SKris Buschelman break; 149777e54ba9SKris Buschelman case MAT_SYMMETRIC: 149877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14992188ac68SBarry Smith case MAT_HERMITIAN: 1500c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15012188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1502b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1503b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1504b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150577e54ba9SKris Buschelman break; 1506d71ae5a4SJacob Faibussowitsch default: 1507d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1508d64ed03dSBarry Smith } 15093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151058667388SSatish Balay } 151158667388SSatish Balay 151266976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1513d71ae5a4SJacob Faibussowitsch { 15140ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15150ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15160ac07820SSatish Balay Mat B; 1517d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1518d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15193eda8832SBarry Smith MatScalar *a; 15200ac07820SSatish Balay 1521d64ed03dSBarry Smith PetscFunctionBegin; 15227fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1523cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15249566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15272e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15289566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1529fc4dec0aSBarry Smith } else { 1530fc4dec0aSBarry Smith B = *matout; 1531fc4dec0aSBarry Smith } 15320ac07820SSatish Balay 15330ac07820SSatish Balay /* copy over the A part */ 15340ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15359371c9d4SSatish Balay ai = Aloc->i; 15369371c9d4SSatish Balay aj = Aloc->j; 15379371c9d4SSatish Balay a = Aloc->a; 15389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15390ac07820SSatish Balay 15400ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1541899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15430ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1544899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15450ac07820SSatish Balay for (k = 0; k < bs; k++) { 15469566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154726fbe8dcSKarl Rupp 15489371c9d4SSatish Balay col++; 15499371c9d4SSatish Balay a += bs; 15500ac07820SSatish Balay } 15510ac07820SSatish Balay } 15520ac07820SSatish Balay } 15530ac07820SSatish Balay /* copy over the B part */ 15540ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15559371c9d4SSatish Balay ai = Aloc->i; 15569371c9d4SSatish Balay aj = Aloc->j; 15579371c9d4SSatish Balay a = Aloc->a; 15580ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1559899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 156026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15610ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15620ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15630ac07820SSatish Balay for (k = 0; k < bs; k++) { 15649566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156526fbe8dcSKarl Rupp col++; 156626fbe8dcSKarl Rupp a += bs; 15670ac07820SSatish Balay } 15680ac07820SSatish Balay } 15690ac07820SSatish Balay } 15709566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15719566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15730ac07820SSatish Balay 1574cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157548a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15770ac07820SSatish Balay } 15780e95ebc0SSatish Balay 157966976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1580d71ae5a4SJacob Faibussowitsch { 158136c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 158236c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1583b24ad042SBarry Smith PetscInt s1, s2, s3; 15840e95ebc0SSatish Balay 1585d64ed03dSBarry Smith PetscFunctionBegin; 15869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158736c4a09eSSatish Balay if (rr) { 15889566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15895f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 159036c4a09eSSatish Balay /* Overlap communication with computation. */ 15919566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 159236c4a09eSSatish Balay } 15930e95ebc0SSatish Balay if (ll) { 15949566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15955f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1596dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15970e95ebc0SSatish Balay } 159836c4a09eSSatish Balay /* scale the diagonal block */ 1599dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 160036c4a09eSSatish Balay 160136c4a09eSSatish Balay if (rr) { 160236c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 16039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1604dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160536c4a09eSSatish Balay } 16063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16070e95ebc0SSatish Balay } 16080e95ebc0SSatish Balay 160966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1610d71ae5a4SJacob Faibussowitsch { 16110ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 161265a92638SMatthew G. Knepley PetscInt *lrows; 16136e520ac8SStefano Zampini PetscInt r, len; 161494342113SStefano Zampini PetscBool cong; 16150ac07820SSatish Balay 1616d64ed03dSBarry Smith PetscFunctionBegin; 16176e520ac8SStefano Zampini /* get locally owned rows */ 16189566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1619dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 162097b48c8fSBarry Smith if (x && b) { 162165a92638SMatthew G. Knepley const PetscScalar *xx; 162265a92638SMatthew G. Knepley PetscScalar *bb; 162365a92638SMatthew G. Knepley 16249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16259566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 162665a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16289566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162997b48c8fSBarry Smith } 163097b48c8fSBarry Smith 16310ac07820SSatish Balay /* actually zap the local rows */ 163272dacd9aSBarry Smith /* 163372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1634a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 163672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163772dacd9aSBarry Smith 163872dacd9aSBarry Smith */ 16399c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16409566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16419566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 164294342113SStefano Zampini if ((diag != 0.0) && cong) { 16439566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1644f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16459566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 164600045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 164765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 164865a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1650a07cd24cSSatish Balay } 16519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16539c957beeSSatish Balay } else { 16549566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1655a07cd24cSSatish Balay } 16569566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16574f9cfa9eSBarry Smith 16584f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1659f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1660e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1661462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1662e56f5c9eSBarry Smith } 16633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16640ac07820SSatish Balay } 166572dacd9aSBarry Smith 166666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1667d71ae5a4SJacob Faibussowitsch { 16686f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 16696497c311SBarry Smith PetscMPIInt n, p = 0; 1670131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16716f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16726f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16736f0a72daSMatthew G. Knepley PetscSF sf; 16746f0a72daSMatthew G. Knepley const PetscScalar *xx; 16756f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16766f0a72daSMatthew G. Knepley Vec xmask, lmask; 16776f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16786f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16796f0a72daSMatthew G. Knepley PetscScalar *aa; 16806f0a72daSMatthew G. Knepley 16816f0a72daSMatthew G. Knepley PetscFunctionBegin; 16826497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->n, &n)); 16836f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16856f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16876f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16886f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16895f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16905ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16919566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16925ba17502SJed Brown } 16936f0a72daSMatthew G. Knepley rrows[r].rank = p; 16946f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16956f0a72daSMatthew G. Knepley } 16969566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16979566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16986f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17019566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 17026f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17039371c9d4SSatish Balay for (r = 0; r < n; ++r) 17049371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17056f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17069566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17074cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 17089566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17099566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17109566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17116f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17129566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17139566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17166f0a72daSMatthew G. Knepley if (x) { 17179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17209566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17216f0a72daSMatthew G. Knepley } 17229566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17234cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17246f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17256f0a72daSMatthew G. Knepley row = lrows[i]; 17266f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1727f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs); 17286f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17296f0a72daSMatthew G. Knepley aa[0] = 0.0; 17306f0a72daSMatthew G. Knepley aa += bs; 17316f0a72daSMatthew G. Knepley } 17326f0a72daSMatthew G. Knepley } 17336f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17346f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17356f0a72daSMatthew G. Knepley row = i / bs; 17366f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17376f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17386f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17396f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1740f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k; 174189ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17426f0a72daSMatthew G. Knepley aa[0] = 0.0; 17436f0a72daSMatthew G. Knepley } 17446f0a72daSMatthew G. Knepley } 17456f0a72daSMatthew G. Knepley } 17466f0a72daSMatthew G. Knepley } 17476f0a72daSMatthew G. Knepley if (x) { 17489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17506f0a72daSMatthew G. Knepley } 17519566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17539566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17544f9cfa9eSBarry Smith 17554f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1756f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17574f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1758462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17594f9cfa9eSBarry Smith } 17603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17616f0a72daSMatthew G. Knepley } 17626f0a72daSMatthew G. Knepley 176366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1764d71ae5a4SJacob Faibussowitsch { 1765bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1766d64ed03dSBarry Smith 1767d64ed03dSBarry Smith PetscFunctionBegin; 17689566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1770bb5a7306SBarry Smith } 1771bb5a7306SBarry Smith 17726849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17730ac07820SSatish Balay 177466976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1775d71ae5a4SJacob Faibussowitsch { 17767fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17777fc3c18eSBarry Smith Mat a, b, c, d; 1778ace3abfcSBarry Smith PetscBool flg; 17797fc3c18eSBarry Smith 17807fc3c18eSBarry Smith PetscFunctionBegin; 17819371c9d4SSatish Balay a = matA->A; 17829371c9d4SSatish Balay b = matA->B; 17839371c9d4SSatish Balay c = matB->A; 17849371c9d4SSatish Balay d = matB->B; 17857fc3c18eSBarry Smith 17869566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178748a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1788462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17907fc3c18eSBarry Smith } 17917fc3c18eSBarry Smith 179266976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1793d71ae5a4SJacob Faibussowitsch { 17943c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17953c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17963c896bc6SHong Zhang 17973c896bc6SHong Zhang PetscFunctionBegin; 17983c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17993c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18009566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 18013c896bc6SHong Zhang } else { 18029566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 18039566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18043c896bc6SHong Zhang } 18059566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18073c896bc6SHong Zhang } 1808273d9f13SBarry Smith 1809d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1810d71ae5a4SJacob Faibussowitsch { 1811001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18124de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18134de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18144de5dceeSHong Zhang 18154de5dceeSHong Zhang PetscFunctionBegin; 18169566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18184de5dceeSHong Zhang } 18194de5dceeSHong Zhang 182066976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1821d71ae5a4SJacob Faibussowitsch { 18224fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18234fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18244fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1825b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18264fe895cdSHong Zhang 18274fe895cdSHong Zhang PetscFunctionBegin; 18284fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18294fe895cdSHong Zhang PetscScalar alpha = a; 18304fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18314fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18329566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1833792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18344fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18354fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18369566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1837792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18389566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1839ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18409566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18414fe895cdSHong Zhang } else { 18424de5dceeSHong Zhang Mat B; 18434de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18469566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18479566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18509566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18519566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18529566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18539566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18544de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18559566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18569566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18579566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18589566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18594fe895cdSHong Zhang } 18603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18614fe895cdSHong Zhang } 18624fe895cdSHong Zhang 186366976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1864d71ae5a4SJacob Faibussowitsch { 18655f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18665f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18672726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18682726fb6dSPierre Jolivet 18699566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18709566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18715f80ce2aSJacob Faibussowitsch } 18723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18732726fb6dSPierre Jolivet } 18742726fb6dSPierre Jolivet 187566976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1876d71ae5a4SJacob Faibussowitsch { 187799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187899cafbc1SBarry Smith 187999cafbc1SBarry Smith PetscFunctionBegin; 18809566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18819566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188399cafbc1SBarry Smith } 188499cafbc1SBarry Smith 188566976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1886d71ae5a4SJacob Faibussowitsch { 188799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188899cafbc1SBarry Smith 188999cafbc1SBarry Smith PetscFunctionBegin; 18909566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18919566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189399cafbc1SBarry Smith } 189499cafbc1SBarry Smith 189566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1896d71ae5a4SJacob Faibussowitsch { 18974aa3045dSJed Brown IS iscol_local; 18984aa3045dSJed Brown PetscInt csize; 18994aa3045dSJed Brown 19004aa3045dSJed Brown PetscFunctionBegin; 19019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1902b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19039566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19045f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1905b79d0421SJed Brown } else { 19069566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1907b79d0421SJed Brown } 1908fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1909b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19109566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1912b79d0421SJed Brown } 19133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19144aa3045dSJed Brown } 191517df9f7cSHong Zhang 191682094794SBarry Smith /* 191782094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191882094794SBarry Smith in local and then by concatenating the local matrices the end result. 19197dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19208f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192182094794SBarry Smith */ 1922fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1923d71ae5a4SJacob Faibussowitsch { 192482094794SBarry Smith PetscMPIInt rank, size; 192582094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1926c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 192729dcf524SDmitry Karpeev Mat M, Mreuse; 192882094794SBarry Smith MatScalar *vwork, *aa; 1929ce94432eSBarry Smith MPI_Comm comm; 193029dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193182094794SBarry Smith Mat_SeqBAIJ *aij; 193282094794SBarry Smith 193382094794SBarry Smith PetscFunctionBegin; 19349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 193729dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193829dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19399566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1940864bd19bSPierre Jolivet if (isrow == iscol) { 1941864bd19bSPierre Jolivet iscol_new = isrow_new; 1942864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1943864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194482094794SBarry Smith 194582094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19475f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1948fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 194982094794SBarry Smith } else { 1950fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 195182094794SBarry Smith } 19529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195482094794SBarry Smith /* 195582094794SBarry Smith m - number of local rows 195682094794SBarry Smith n - number of columns (same on all processors) 195782094794SBarry Smith rstart - first row in new global matrix generated 195882094794SBarry Smith */ 19599566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19609566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 196182094794SBarry Smith m = m / bs; 196282094794SBarry Smith n = n / bs; 196382094794SBarry Smith 196482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196557508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 196682094794SBarry Smith ii = aij->i; 196782094794SBarry Smith jj = aij->j; 196882094794SBarry Smith 196982094794SBarry Smith /* 197082094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 197182094794SBarry Smith portions of the matrix in order to do correct preallocation 197282094794SBarry Smith */ 197382094794SBarry Smith 197482094794SBarry Smith /* first get start and end of "diagonal" columns */ 197582094794SBarry Smith if (csize == PETSC_DECIDE) { 19769566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197782094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197882094794SBarry Smith nlocal = m; 197982094794SBarry Smith } else { 198082094794SBarry Smith nlocal = n / size + ((n % size) > rank); 198182094794SBarry Smith } 198282094794SBarry Smith } else { 198382094794SBarry Smith nlocal = csize / bs; 198482094794SBarry Smith } 19859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 198682094794SBarry Smith rstart = rend - nlocal; 1987aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198882094794SBarry Smith 198982094794SBarry Smith /* next, compute all the lengths */ 19909566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 199182094794SBarry Smith for (i = 0; i < m; i++) { 199282094794SBarry Smith jend = ii[i + 1] - ii[i]; 199382094794SBarry Smith olen = 0; 199482094794SBarry Smith dlen = 0; 199582094794SBarry Smith for (j = 0; j < jend; j++) { 199682094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199782094794SBarry Smith else dlen++; 199882094794SBarry Smith jj++; 199982094794SBarry Smith } 200082094794SBarry Smith olens[i] = olen; 200182094794SBarry Smith dlens[i] = dlen; 200282094794SBarry Smith } 20039566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 2005fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 20069566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20079566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20089566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200982094794SBarry Smith } else { 201082094794SBarry Smith PetscInt ml, nl; 201182094794SBarry Smith 201282094794SBarry Smith M = *newmat; 20139566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20145f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20159566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 201682094794SBarry Smith /* 201782094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201882094794SBarry Smith rather than the slower MatSetValues(). 201982094794SBarry Smith */ 202082094794SBarry Smith M->was_assembled = PETSC_TRUE; 202182094794SBarry Smith M->assembled = PETSC_FALSE; 202282094794SBarry Smith } 20239566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202557508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 202682094794SBarry Smith ii = aij->i; 202782094794SBarry Smith jj = aij->j; 202882094794SBarry Smith aa = aij->a; 202982094794SBarry Smith for (i = 0; i < m; i++) { 203082094794SBarry Smith row = rstart / bs + i; 203182094794SBarry Smith nz = ii[i + 1] - ii[i]; 20329371c9d4SSatish Balay cwork = jj; 20338e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20349371c9d4SSatish Balay vwork = aa; 20358e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20369566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203782094794SBarry Smith } 203882094794SBarry Smith 20399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 204182094794SBarry Smith *newmat = M; 204282094794SBarry Smith 204382094794SBarry Smith /* save submatrix used in processor for next request */ 204482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20469566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204782094794SBarry Smith } 20483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204982094794SBarry Smith } 205082094794SBarry Smith 205166976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2052d71ae5a4SJacob Faibussowitsch { 205382094794SBarry Smith MPI_Comm comm, pcomm; 2054a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205582094794SBarry Smith const PetscInt *rows; 2056dbf0e21dSBarry Smith PetscMPIInt size; 2057a0a83eb5SRémi Lacroix IS crowp, lcolp; 205882094794SBarry Smith 205982094794SBarry Smith PetscFunctionBegin; 20609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 206182094794SBarry Smith /* make a collective version of 'rowp' */ 20629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 206382094794SBarry Smith if (pcomm == comm) { 206482094794SBarry Smith crowp = rowp; 206582094794SBarry Smith } else { 20669566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20689566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20699566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 207082094794SBarry Smith } 20719566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2072a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2075dbf0e21dSBarry Smith if (size == 1) { 207682094794SBarry Smith lcolp = colp; 207782094794SBarry Smith } else { 20789566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207982094794SBarry Smith } 20809566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 208175f6568bSJed Brown /* now we just get the submatrix */ 20829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2083fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2084a0a83eb5SRémi Lacroix /* clean up */ 208548a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 208648a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208882094794SBarry Smith } 208982094794SBarry Smith 209066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2091d71ae5a4SJacob Faibussowitsch { 20928c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20938c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20948c7482ecSBarry Smith 20958c7482ecSBarry Smith PetscFunctionBegin; 209626fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209726fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20998c7482ecSBarry Smith } 21008c7482ecSBarry Smith 210166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2102d71ae5a4SJacob Faibussowitsch { 2103f6d58c54SBarry Smith Mat B; 2104f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2105f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2106f6d58c54SBarry Smith Mat_SeqAIJ *b; 2107f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2108f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2109f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2110f6d58c54SBarry Smith 2111f6d58c54SBarry Smith PetscFunctionBegin; 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2114f6d58c54SBarry Smith 21152ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2117ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2119f6d58c54SBarry Smith displs = recvcounts + size; 2120f6d58c54SBarry Smith for (i = 0; i < size; i++) { 21216497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i])); 21226497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i])); 2123f6d58c54SBarry Smith } 21249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21252ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21269566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21289566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2130f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2131f6d58c54SBarry Smith 21322ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2133f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2134f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2135f6d58c54SBarry Smith a_jsendbuf = ad->j; 2136f6d58c54SBarry Smith b_jsendbuf = bd->j; 2137f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2138f6d58c54SBarry Smith cnt = 0; 2139f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2140f6d58c54SBarry Smith /* put in lower diagonal portion */ 2141f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2142f6d58c54SBarry Smith while (m > 0) { 2143f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2144f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2145f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2146f6d58c54SBarry Smith m--; 2147f6d58c54SBarry Smith } 2148f6d58c54SBarry Smith 2149f6d58c54SBarry Smith /* put in diagonal portion */ 2150ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2151f6d58c54SBarry Smith 2152f6d58c54SBarry Smith /* put in upper diagonal portion */ 2153ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2154f6d58c54SBarry Smith } 21555f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2156f6d58c54SBarry Smith 21572ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2158f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2159f6d58c54SBarry Smith recvcounts[i] = 0; 2160ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2161f6d58c54SBarry Smith } 2162f6d58c54SBarry Smith displs[0] = 0; 2163ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21655804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2166f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21679566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2168f6d58c54SBarry Smith /* set the b->i indices */ 2169f6d58c54SBarry Smith b->i[0] = 0; 2170ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21719566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21749566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2175f6d58c54SBarry Smith 2176b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2177f6d58c54SBarry Smith *newmat = B; 21783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2179f6d58c54SBarry Smith } 2180f6d58c54SBarry Smith 218166976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2182d71ae5a4SJacob Faibussowitsch { 2183b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2184f4259b30SLisandro Dalcin Vec bb1 = NULL; 2185b1a666ecSBarry Smith 2186b1a666ecSBarry Smith PetscFunctionBegin; 2187b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21889566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2190b1a666ecSBarry Smith } 2191b1a666ecSBarry Smith 219248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21934e980039SJed Brown 2194b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2195b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21969566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2197b1a666ecSBarry Smith its--; 2198b1a666ecSBarry Smith } 2199b1a666ecSBarry Smith 2200b1a666ecSBarry Smith while (its--) { 22019566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2203b1a666ecSBarry Smith 2204b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22059566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22069566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2207b1a666ecSBarry Smith 2208b1a666ecSBarry Smith /* local sweep */ 22099566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2210b1a666ecSBarry Smith } 2211b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2212b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22139566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2214b1a666ecSBarry Smith its--; 2215b1a666ecSBarry Smith } 2216b1a666ecSBarry Smith while (its--) { 22179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2219b1a666ecSBarry Smith 2220b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22219566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22229566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2223b1a666ecSBarry Smith 2224b1a666ecSBarry Smith /* local sweep */ 22259566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2226b1a666ecSBarry Smith } 2227b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2228b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2230b1a666ecSBarry Smith its--; 2231b1a666ecSBarry Smith } 2232b1a666ecSBarry Smith while (its--) { 22339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2235b1a666ecSBarry Smith 2236b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22379566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22389566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2239b1a666ecSBarry Smith 2240b1a666ecSBarry Smith /* local sweep */ 22419566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2242b1a666ecSBarry Smith } 2243ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2244b1a666ecSBarry Smith 22459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2247b1a666ecSBarry Smith } 2248b1a666ecSBarry Smith 224966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2250d71ae5a4SJacob Faibussowitsch { 225147f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2252a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 225347f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 225447f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 225547f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 225647f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 225747f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 225847f7623dSRémi Lacroix PetscReal *work; 22596497c311SBarry Smith PetscMPIInt iN; 226047f7623dSRémi Lacroix 226147f7623dSRémi Lacroix PetscFunctionBegin; 22629566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22639566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2264857cbf51SRichard Tran Mills if (type == NORM_2) { 226547f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 226647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 226947f7623dSRémi Lacroix a_val++; 227047f7623dSRémi Lacroix } 227147f7623dSRémi Lacroix } 227247f7623dSRémi Lacroix } 227347f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 227447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 227747f7623dSRémi Lacroix b_val++; 227847f7623dSRémi Lacroix } 227947f7623dSRémi Lacroix } 228047f7623dSRémi Lacroix } 2281857cbf51SRichard Tran Mills } else if (type == NORM_1) { 228247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 228647f7623dSRémi Lacroix a_val++; 228747f7623dSRémi Lacroix } 228847f7623dSRémi Lacroix } 228947f7623dSRémi Lacroix } 229047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 229447f7623dSRémi Lacroix b_val++; 229547f7623dSRémi Lacroix } 229647f7623dSRémi Lacroix } 229747f7623dSRémi Lacroix } 2298857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 229947f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 230047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 23026497c311SBarry Smith PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb; 230347f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 230447f7623dSRémi Lacroix a_val++; 230547f7623dSRémi Lacroix } 230647f7623dSRémi Lacroix } 230747f7623dSRémi Lacroix } 230847f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 231047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 23116497c311SBarry Smith PetscInt col = garray[b_aij->j[i]] * bs + jb; 231247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 231347f7623dSRémi Lacroix b_val++; 231447f7623dSRémi Lacroix } 231547f7623dSRémi Lacroix } 231647f7623dSRémi Lacroix } 2317857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2318a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2319a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2320a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2321857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2322a873a8cdSSam Reynolds a_val++; 2323a873a8cdSSam Reynolds } 2324a873a8cdSSam Reynolds } 2325a873a8cdSSam Reynolds } 2326a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2327a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2328a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2329857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2330a873a8cdSSam Reynolds b_val++; 2331a873a8cdSSam Reynolds } 2332a873a8cdSSam Reynolds } 2333a873a8cdSSam Reynolds } 2334857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2335857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2336857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2337857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2338857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2339857cbf51SRichard Tran Mills a_val++; 2340857cbf51SRichard Tran Mills } 2341857cbf51SRichard Tran Mills } 2342857cbf51SRichard Tran Mills } 2343857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2344857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2345857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2346857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2347857cbf51SRichard Tran Mills b_val++; 2348857cbf51SRichard Tran Mills } 2349857cbf51SRichard Tran Mills } 2350857cbf51SRichard Tran Mills } 2351857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 23526497c311SBarry Smith PetscCall(PetscMPIIntCast(N, &iN)); 2353857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 2354462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, iN, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 235547f7623dSRémi Lacroix } else { 2356462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 235747f7623dSRémi Lacroix } 23589566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2359857cbf51SRichard Tran Mills if (type == NORM_2) { 2360a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2361857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2362a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 236347f7623dSRémi Lacroix } 23643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 236547f7623dSRémi Lacroix } 236647f7623dSRémi Lacroix 236766976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2368d71ae5a4SJacob Faibussowitsch { 2369bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2370bbead8a2SBarry Smith 2371bbead8a2SBarry Smith PetscFunctionBegin; 23729566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23737b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23747b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23757b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2377bbead8a2SBarry Smith } 2378bbead8a2SBarry Smith 237966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2380d71ae5a4SJacob Faibussowitsch { 23817d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23826f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23837d68702bSBarry Smith 23847d68702bSBarry Smith PetscFunctionBegin; 23856f33a894SBarry Smith if (!Y->preallocated) { 23869566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23876f33a894SBarry Smith } else if (!aij->nz) { 2388b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23899566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2390b83222d8SBarry Smith aij->nonew = nonew; 23917d68702bSBarry Smith } 23929566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23947d68702bSBarry Smith } 23958c7482ecSBarry Smith 239666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2397d71ae5a4SJacob Faibussowitsch { 23983b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23993b49f96aSBarry Smith 24003b49f96aSBarry Smith PetscFunctionBegin; 24015f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 24029566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 24033b49f96aSBarry Smith if (d) { 24043b49f96aSBarry Smith PetscInt rstart; 24059566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24063b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24073b49f96aSBarry Smith } 24083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24093b49f96aSBarry Smith } 24103b49f96aSBarry Smith 241166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2412d71ae5a4SJacob Faibussowitsch { 2413a5b7ff6bSBarry Smith PetscFunctionBegin; 2414a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2416a5b7ff6bSBarry Smith } 2417a5b7ff6bSBarry Smith 241817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 241917ea310bSPierre Jolivet { 242017ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 242117ea310bSPierre Jolivet 242217ea310bSPierre Jolivet PetscFunctionBegin; 242317ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 242417ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 242517ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 242617ea310bSPierre Jolivet } 242717ea310bSPierre Jolivet 24283964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2429cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2430cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2431cc2dc46cSBarry Smith MatMult_MPIBAIJ, 243297304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24337c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24347c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2435f4259b30SLisandro Dalcin NULL, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin NULL, 2438f4259b30SLisandro Dalcin /*10*/ NULL, 2439f4259b30SLisandro Dalcin NULL, 2440f4259b30SLisandro Dalcin NULL, 2441b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2442cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244397304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24447fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2445cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2446cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2447cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2449cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2450cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2451cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2452d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2453f4259b30SLisandro Dalcin NULL, 2454f4259b30SLisandro Dalcin NULL, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 245726cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2458f4259b30SLisandro Dalcin NULL, 2459f4259b30SLisandro Dalcin NULL, 2460a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2461f4259b30SLisandro Dalcin NULL, 2462d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2463f4259b30SLisandro Dalcin NULL, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin NULL, 2466f4259b30SLisandro Dalcin NULL, 2467d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24687dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2469cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2470cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24713c896bc6SHong Zhang MatCopy_MPIBAIJ, 2472f4259b30SLisandro Dalcin /*44*/ NULL, 2473cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24747d68702bSBarry Smith MatShift_MPIBAIJ, 2475f4259b30SLisandro Dalcin NULL, 24766f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2477f4259b30SLisandro Dalcin /*49*/ NULL, 2478f4259b30SLisandro Dalcin NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin NULL, 2481f4259b30SLisandro Dalcin NULL, 248293dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2483f4259b30SLisandro Dalcin NULL, 2484cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 248582094794SBarry Smith MatPermute_MPIBAIJ, 2486cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24877dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2488f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2489f14a1c24SBarry Smith MatView_MPIBAIJ, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin /*64*/ NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 2497d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin /*74*/ NULL, 2503f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin /*79*/ NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 25115bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2512f4259b30SLisandro Dalcin /*84*/ NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin /*89*/ NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin /*94*/ NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin /*99*/ NULL, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin NULL, 25302726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2531f4259b30SLisandro Dalcin NULL, 2532f4259b30SLisandro Dalcin /*104*/ NULL, 253399cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25348c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin /*109*/ NULL, 2538f4259b30SLisandro Dalcin NULL, 2539f4259b30SLisandro Dalcin NULL, 2540f4259b30SLisandro Dalcin NULL, 25413b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2542d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2543f4259b30SLisandro Dalcin NULL, 25444683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin NULL, 2547f4259b30SLisandro Dalcin /*119*/ NULL, 2548f4259b30SLisandro Dalcin NULL, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin NULL, 2551e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2552f4259b30SLisandro Dalcin /*124*/ NULL, 2553a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25543964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin NULL, 2557f4259b30SLisandro Dalcin /*129*/ NULL, 2558f4259b30SLisandro Dalcin NULL, 2559f4259b30SLisandro Dalcin NULL, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin NULL, 2562f4259b30SLisandro Dalcin /*134*/ NULL, 2563f4259b30SLisandro Dalcin NULL, 2564f4259b30SLisandro Dalcin NULL, 2565f4259b30SLisandro Dalcin NULL, 2566f4259b30SLisandro Dalcin NULL, 256746533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2568f4259b30SLisandro Dalcin NULL, 2569f4259b30SLisandro Dalcin NULL, 2570bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2571f4259b30SLisandro Dalcin NULL, 2572d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2573d70f29a3SPierre Jolivet NULL, 2574d70f29a3SPierre Jolivet NULL, 257599a7f59eSMark Adams NULL, 257699a7f59eSMark Adams NULL, 25777fb60732SBarry Smith NULL, 2578dec0b466SHong Zhang /*150*/ NULL, 2579eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 25804cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIBAIJ, 258142ce410bSJunchao Zhang NULL, 258242ce410bSJunchao Zhang NULL, 25834cc2b5b5SPierre Jolivet NULL}; 258479bdfe76SSatish Balay 2585cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2586c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2587d94109b8SHong Zhang 258866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2589d71ae5a4SJacob Faibussowitsch { 2590b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2591f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2592f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2593f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2594d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25953bd0feecSPierre Jolivet PetscBool nooffprocentries; 2596aac34f13SBarry Smith 2597aac34f13SBarry Smith PetscFunctionBegin; 25989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 26009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26029566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2603d0f46423SBarry Smith m = B->rmap->n / bs; 2604d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2605d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2606d0f46423SBarry Smith cend = B->cmap->rend / bs; 2607b8d659d7SLisandro Dalcin 26085f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26099566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2610aac34f13SBarry Smith for (i = 0; i < m; i++) { 2611cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26125f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2613b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 261437cd3c0dSBarry Smith dlen = 0; 261537cd3c0dSBarry Smith olen = 0; 2616cf12db73SBarry Smith JJ = jj + ii[i]; 2617b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 261837cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261937cd3c0dSBarry Smith else dlen++; 2620aac34f13SBarry Smith JJ++; 2621aac34f13SBarry Smith } 262237cd3c0dSBarry Smith d_nnz[i] = dlen; 262337cd3c0dSBarry Smith o_nnz[i] = olen; 2624aac34f13SBarry Smith } 26259566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26269566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2627aac34f13SBarry Smith 2628b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 262948a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2630b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2631b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2632cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2633cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2634bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2635cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26369566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26373adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26383adadaf3SJed Brown PetscInt j; 26393adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26403adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26419566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26423adadaf3SJed Brown } 26433adadaf3SJed Brown } 2644aac34f13SBarry Smith } 2645aac34f13SBarry Smith 26469566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26473bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26483bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26499566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26513bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26523bd0feecSPierre Jolivet 26539566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2655aac34f13SBarry Smith } 2656aac34f13SBarry Smith 2657aac34f13SBarry Smith /*@C 265811a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2659aac34f13SBarry Smith 2660d083f849SBarry Smith Collective 2661aac34f13SBarry Smith 2662aac34f13SBarry Smith Input Parameters: 26631c4f3114SJed Brown + B - the matrix 2664dfb205c3SBarry Smith . bs - the block size 266520f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2666aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2667d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2668aac34f13SBarry Smith 2669664954b6SBarry Smith Level: advanced 2670aac34f13SBarry Smith 267195452b02SPatrick Sanan Notes: 2672d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2673d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2674d8a51d2aSBarry Smith called this routine. 2675d8a51d2aSBarry Smith 267611a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 267711a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26783adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 267911a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26803adadaf3SJed Brown block column and the second index is over columns within a block. 26813adadaf3SJed Brown 2682664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2683664954b6SBarry Smith 26847d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2685aac34f13SBarry Smith @*/ 2686d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2687d71ae5a4SJacob Faibussowitsch { 2688aac34f13SBarry Smith PetscFunctionBegin; 26896ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26906ba663aaSJed Brown PetscValidType(B, 1); 26916ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2692cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2694aac34f13SBarry Smith } 2695aac34f13SBarry Smith 2696d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2697d71ae5a4SJacob Faibussowitsch { 2698ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2699535b19f3SBarry Smith PetscInt i; 27005d2a9ed1SStefano Zampini PetscMPIInt size; 2701a23d5eceSKris Buschelman 2702a23d5eceSKris Buschelman PetscFunctionBegin; 2703ad79cf63SBarry Smith if (B->hash_active) { 2704aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2705ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2706ad79cf63SBarry Smith } 2707ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 27089566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 27099566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27119566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2712899cda47SBarry Smith 2713a23d5eceSKris Buschelman if (d_nnz) { 2714ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2715a23d5eceSKris Buschelman } 2716a23d5eceSKris Buschelman if (o_nnz) { 2717ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2718a23d5eceSKris Buschelman } 2719a23d5eceSKris Buschelman 2720a23d5eceSKris Buschelman b->bs2 = bs * bs; 2721d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2722d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2723d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2724d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2725a23d5eceSKris Buschelman 2726ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2727d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2728d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2729d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2730d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2731a23d5eceSKris Buschelman 2732cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2733eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2734cb7b82ddSBarry Smith #else 27359566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2736cb7b82ddSBarry Smith #endif 27379566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27399566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2740cb7b82ddSBarry Smith 27419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2742c508b908SBarry Smith 2743c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27449566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27459566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27479566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2748c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2749cb7b82ddSBarry Smith 2750c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2751ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27529566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27549566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2755c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2756a23d5eceSKris Buschelman 27579566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27589566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2759526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2760cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2761cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2763a23d5eceSKris Buschelman } 2764a23d5eceSKris Buschelman 27657087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27667087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27675bf65638SKris Buschelman 2768d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2769d71ae5a4SJacob Faibussowitsch { 277082094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 277182094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 277282094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 277382094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 277482094794SBarry Smith 277582094794SBarry Smith PetscFunctionBegin; 27769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 277782094794SBarry Smith ii[0] = 0; 277882094794SBarry Smith for (i = 0; i < M; i++) { 277908401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 278008401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 278182094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27825ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27835ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27849371c9d4SSatish Balay if (jd[j] == i) { 27859371c9d4SSatish Balay ii[i + 1]--; 27869371c9d4SSatish Balay break; 27879371c9d4SSatish Balay } 27885ee9ba1cSJed Brown } 278982094794SBarry Smith } 27909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 279182094794SBarry Smith cnt = 0; 279282094794SBarry Smith for (i = 0; i < M; i++) { 279382094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 279482094794SBarry Smith if (garray[jo[j]] > rstart) break; 279582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279682094794SBarry Smith } 279782094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2798ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 279982094794SBarry Smith } 2800ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 280182094794SBarry Smith } 28029566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 28033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 280482094794SBarry Smith } 280582094794SBarry Smith 2806c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 280762471d69SBarry Smith 2808cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2809b2573a8aSBarry Smith 2810d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2811d71ae5a4SJacob Faibussowitsch { 281262471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 281385a69837SSatish Balay Mat_MPIAIJ *b; 28145f80ce2aSJacob Faibussowitsch Mat B; 281562471d69SBarry Smith 281662471d69SBarry Smith PetscFunctionBegin; 28175f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 281862471d69SBarry Smith 28190f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28200f6d62edSLisandro Dalcin B = *newmat; 28210f6d62edSLisandro Dalcin } else { 28229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28239566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28280f6d62edSLisandro Dalcin } 282962471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 283062471d69SBarry Smith 28310f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28329566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28339566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28340f6d62edSLisandro Dalcin } else { 28357c612885SStefano Zampini PetscInt *garray = a->garray; 28367c612885SStefano Zampini Mat_SeqAIJ *bB; 28377c612885SStefano Zampini PetscInt bs, nnz; 28389566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28407c612885SStefano Zampini /* just clear out the data structure */ 2841eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE)); 28429566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28439566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28447c612885SStefano Zampini 28457c612885SStefano Zampini /* Global numbering for b->B columns */ 28467c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28477c612885SStefano Zampini bs = A->rmap->bs; 28487c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28497c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28507c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28517c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28527c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28537c612885SStefano Zampini } 28540f6d62edSLisandro Dalcin } 28559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28570f6d62edSLisandro Dalcin 2858511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28599566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 286062471d69SBarry Smith } else { 286162471d69SBarry Smith *newmat = B; 286262471d69SBarry Smith } 28633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 286462471d69SBarry Smith } 286562471d69SBarry Smith 28660bad9183SKris Buschelman /*MC 2867fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28680bad9183SKris Buschelman 28690bad9183SKris Buschelman Options Database Keys: 287011a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28718c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28726679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 287367b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28740bad9183SKris Buschelman 28750bad9183SKris Buschelman Level: beginner 28760cd7f59aSBarry Smith 287711a5261eSBarry Smith Note: 28785e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 287911a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28800bad9183SKris Buschelman 28815e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28820bad9183SKris Buschelman M*/ 28830bad9183SKris Buschelman 2884cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2885c0cdd4a1SDahai Guo 2886d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2887d71ae5a4SJacob Faibussowitsch { 2888273d9f13SBarry Smith Mat_MPIBAIJ *b; 288994ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith PetscFunctionBegin; 28924dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 289382502324SSatish Balay B->data = (void *)b; 2894aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2895273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2896273d9f13SBarry Smith 2897273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith /* build local table of row and column ownerships */ 29029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2903273d9f13SBarry Smith 2904273d9f13SBarry Smith /* build cache for off array entries formed */ 29059566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 290626fbe8dcSKarl Rupp 2907273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 29080298fd71SBarry Smith b->colmap = NULL; 29090298fd71SBarry Smith b->garray = NULL; 2910273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2911273d9f13SBarry Smith 2912273d9f13SBarry Smith /* stuff used in block assembly */ 2913f4259b30SLisandro Dalcin b->barray = NULL; 2914273d9f13SBarry Smith 2915273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2916f4259b30SLisandro Dalcin b->lvec = NULL; 2917f4259b30SLisandro Dalcin b->Mvctx = NULL; 2918273d9f13SBarry Smith 2919273d9f13SBarry Smith /* stuff for MatGetRow() */ 2920f4259b30SLisandro Dalcin b->rowindices = NULL; 2921f4259b30SLisandro Dalcin b->rowvalues = NULL; 2922273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2923273d9f13SBarry Smith 2924273d9f13SBarry Smith /* hash table stuff */ 2925f4259b30SLisandro Dalcin b->ht = NULL; 2926f4259b30SLisandro Dalcin b->hd = NULL; 2927273d9f13SBarry Smith b->ht_size = 0; 2928273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2929273d9f13SBarry Smith b->ht_fact = 0; 2930273d9f13SBarry Smith b->ht_total_ct = 0; 2931273d9f13SBarry Smith b->ht_insert_ct = 0; 2932273d9f13SBarry Smith 29337dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29347a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29357a868f3eSHong Zhang 29369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29397ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29417ea3e4caSstefano_zampini #endif 29429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29499566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 295094ae4db5SBarry Smith 2951d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29529566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 295394ae4db5SBarry Smith if (flg) { 295494ae4db5SBarry Smith PetscReal fact = 1.39; 29559566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29569566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 295794ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29589566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29599566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 296094ae4db5SBarry Smith } 2961d0609cedSBarry Smith PetscOptionsEnd(); 29623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2963273d9f13SBarry Smith } 2964273d9f13SBarry Smith 29652920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2966209238afSKris Buschelman /*MC 2967002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2968209238afSKris Buschelman 296911a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 297011a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2971209238afSKris Buschelman 2972209238afSKris Buschelman Options Database Keys: 297311a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2974209238afSKris Buschelman 2975209238afSKris Buschelman Level: beginner 2976209238afSKris Buschelman 297767be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2978209238afSKris Buschelman M*/ 2979209238afSKris Buschelman 29805d83a8b1SBarry Smith /*@ 298111a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 298267be906fSBarry Smith (block compressed row). 2983273d9f13SBarry Smith 2984c3339decSBarry Smith Collective 2985273d9f13SBarry Smith 2986273d9f13SBarry Smith Input Parameters: 29871c4f3114SJed Brown + B - the matrix 298811a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 298967be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2990273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2991273d9f13SBarry Smith submatrix (same for all local rows) 2992273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2993273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 299467be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 299595742e49SBarry Smith set it even if it is zero. 2996273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2997273d9f13SBarry Smith submatrix (same for all local rows). 2998273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2999273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 300067be906fSBarry Smith each block row) or `NULL`. 3001273d9f13SBarry Smith 300249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3003273d9f13SBarry Smith 3004273d9f13SBarry Smith Options Database Keys: 30058c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 300667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 3007273d9f13SBarry Smith 300867be906fSBarry Smith Level: intermediate 300967be906fSBarry Smith 3010273d9f13SBarry Smith Notes: 301167be906fSBarry Smith For good matrix assembly performance 301267be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 301367be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 301467be906fSBarry Smith performance can be increased by more than a factor of 50. 301567be906fSBarry Smith 301611a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3017273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith Storage Information: 3020273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3021273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3022273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3023273d9f13SBarry Smith local matrix (a rectangular submatrix). 3024273d9f13SBarry Smith 3025273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 302667be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 302767be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3028273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 302967be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3030273d9f13SBarry Smith 3031273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3032273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3033273d9f13SBarry Smith 3034273d9f13SBarry Smith .vb 3035273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3036a4b1a0f6SJed Brown -------------------------- 3037273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3038273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3039273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3040a4b1a0f6SJed Brown -------------------------- 3041273d9f13SBarry Smith .ve 3042273d9f13SBarry Smith 3043273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3044273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3045273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 304611a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3047273d9f13SBarry Smith 304867be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 304967be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3050273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 305120f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3052273d9f13SBarry Smith 305311a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3054aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 305567be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3056aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3057aa95bbe8SBarry Smith 305867be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3059273d9f13SBarry Smith @*/ 3060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3061d71ae5a4SJacob Faibussowitsch { 3062273d9f13SBarry Smith PetscFunctionBegin; 30636ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30646ba663aaSJed Brown PetscValidType(B, 1); 30656ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3066cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3068273d9f13SBarry Smith } 3069273d9f13SBarry Smith 30702920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 30715d83a8b1SBarry Smith /*@ 307211a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 307367be906fSBarry Smith (block compressed row). 307479bdfe76SSatish Balay 3075d083f849SBarry Smith Collective 3076db81eaa0SLois Curfman McInnes 307779bdfe76SSatish Balay Input Parameters: 3078db81eaa0SLois Curfman McInnes + comm - MPI communicator 307911a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 308011a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 308111a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 308292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 308411a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 308592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308692e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 308711a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 308811a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 308947a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 309079bdfe76SSatish Balay submatrix (same for all local rows) 309147a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 309292e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30930298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 309495742e49SBarry Smith and set it even if it is zero. 309547a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 309679bdfe76SSatish Balay submatrix (same for all local rows). 309747a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 309892e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30990298fd71SBarry Smith each block row) or NULL. 310079bdfe76SSatish Balay 310179bdfe76SSatish Balay Output Parameter: 310279bdfe76SSatish Balay . A - the matrix 310379bdfe76SSatish Balay 3104db81eaa0SLois Curfman McInnes Options Database Keys: 31058c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 310667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 31073ffaccefSLois Curfman McInnes 310867be906fSBarry Smith Level: intermediate 310967be906fSBarry Smith 311067be906fSBarry Smith Notes: 311177433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 311277433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 311377433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 311477433607SBarry Smith 311567be906fSBarry Smith For good matrix assembly performance 311667be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 311767be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 311867be906fSBarry Smith performance can be increased by more than a factor of 50. 311967be906fSBarry Smith 312049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 312149a6f317SBarry Smith 312247a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 312347a75d0bSBarry Smith 312479bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 312579bdfe76SSatish Balay (possibly both). 312679bdfe76SSatish Balay 312711a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3128be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3129be79a94dSBarry Smith 3130727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3131727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3132727bdf9bSBarry Smith 313379bdfe76SSatish Balay Storage Information: 313479bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 313579bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 313679bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 313779bdfe76SSatish Balay local matrix (a rectangular submatrix). 313879bdfe76SSatish Balay 313979bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 314079bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 314167be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 314279bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 314367be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 314479bdfe76SSatish Balay 314579bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 314679bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 314779bdfe76SSatish Balay 3148db81eaa0SLois Curfman McInnes .vb 3149db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3150a4b1a0f6SJed Brown -------------------------- 3151db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3152db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3153db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3154a4b1a0f6SJed Brown -------------------------- 3155db81eaa0SLois Curfman McInnes .ve 315679bdfe76SSatish Balay 315779bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 315879bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315979bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 316011a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 316179bdfe76SSatish Balay 316267be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 316367be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 316479bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 316520f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 316679bdfe76SSatish Balay 3167727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3168727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 316979bdfe76SSatish Balay @*/ 3170d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3171d71ae5a4SJacob Faibussowitsch { 3172b24ad042SBarry Smith PetscMPIInt size; 317379bdfe76SSatish Balay 3174d64ed03dSBarry Smith PetscFunctionBegin; 31759566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3178273d9f13SBarry Smith if (size > 1) { 31799566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31809566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3181273d9f13SBarry Smith } else { 31829566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31839566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31843914022bSBarry Smith } 31853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 318679bdfe76SSatish Balay } 3187026e39d0SSatish Balay 3188d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3189d71ae5a4SJacob Faibussowitsch { 31900ac07820SSatish Balay Mat mat; 31910ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3192b24ad042SBarry Smith PetscInt len = 0; 31930ac07820SSatish Balay 3194d64ed03dSBarry Smith PetscFunctionBegin; 3195f4259b30SLisandro Dalcin *newmat = NULL; 31969566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31989566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31997fff6886SHong Zhang 3200420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3201420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3202420957c1SBarry Smith if (matin->hash_active) { 3203420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3204420957c1SBarry Smith } else { 3205d5f3da31SBarry Smith mat->factortype = matin->factortype; 3206273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32070ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32087fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32097fff6886SHong Zhang 3210273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3211d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32120ac07820SSatish Balay a->bs2 = oldmat->bs2; 32130ac07820SSatish Balay a->mbs = oldmat->mbs; 32140ac07820SSatish Balay a->nbs = oldmat->nbs; 32150ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32160ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32170ac07820SSatish Balay 32180ac07820SSatish Balay a->size = oldmat->size; 32190ac07820SSatish Balay a->rank = oldmat->rank; 3220aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3221aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3222f4259b30SLisandro Dalcin a->rowindices = NULL; 3223f4259b30SLisandro Dalcin a->rowvalues = NULL; 32240ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3225f4259b30SLisandro Dalcin a->barray = NULL; 3226899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3227899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3228899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3229899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32300ac07820SSatish Balay 3231133cdb44SSatish Balay /* hash table stuff */ 3232f4259b30SLisandro Dalcin a->ht = NULL; 3233f4259b30SLisandro Dalcin a->hd = NULL; 3234133cdb44SSatish Balay a->ht_size = 0; 3235133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 323625fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3237133cdb44SSatish Balay a->ht_total_ct = 0; 3238133cdb44SSatish Balay a->ht_insert_ct = 0; 3239133cdb44SSatish Balay 32409566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32410ac07820SSatish Balay if (oldmat->colmap) { 3242aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3243eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 324448e59246SSatish Balay #else 32459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 324748e59246SSatish Balay #endif 3248f4259b30SLisandro Dalcin } else a->colmap = NULL; 32494beb1cfeSHong Zhang 3250f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32529566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3253f4259b30SLisandro Dalcin } else a->garray = NULL; 32540ac07820SSatish Balay 32559566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32569566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32579566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32587fff6886SHong Zhang 32599566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32609566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3261420957c1SBarry Smith } 32629566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32630ac07820SSatish Balay *newmat = mat; 32643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32650ac07820SSatish Balay } 326657b952d6SSatish Balay 3267618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3268d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3269d71ae5a4SJacob Faibussowitsch { 3270b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3271b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3272b51a4376SLisandro Dalcin PetscScalar *matvals; 3273b51a4376SLisandro Dalcin 3274b51a4376SLisandro Dalcin PetscFunctionBegin; 32759566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3276b51a4376SLisandro Dalcin 3277b51a4376SLisandro Dalcin /* read in matrix header */ 32789566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32795f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32809371c9d4SSatish Balay M = header[1]; 32819371c9d4SSatish Balay N = header[2]; 32829371c9d4SSatish Balay nz = header[3]; 32835f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32845f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32855f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3286b51a4376SLisandro Dalcin 3287b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32889566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3289618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3290618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3291618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3292b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3293b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3294b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3297b51a4376SLisandro Dalcin 3298b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32999566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 33005f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 33019566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 33029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 33039566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 33049566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 33059371c9d4SSatish Balay mbs = m / bs; 33069371c9d4SSatish Balay nbs = n / bs; 3307b51a4376SLisandro Dalcin 3308b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 33099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 33109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 33119371c9d4SSatish Balay rowidxs[0] = 0; 33129371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3313462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 33145f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3315b51a4376SLisandro Dalcin 3316b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 33179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 33189566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 33199566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3320b51a4376SLisandro Dalcin 3321b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3322b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3323b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3324618cc2edSLisandro Dalcin PetscBool sbaij, done; 3325b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3326b51a4376SLisandro Dalcin 33279566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33289566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33299566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3331b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33329566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33339566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3334618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3335618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3336618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3337618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3338618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3339618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3340618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3341b51a4376SLisandro Dalcin } else { 33429566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3343b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3344b51a4376SLisandro Dalcin } 3345b51a4376SLisandro Dalcin } 3346618cc2edSLisandro Dalcin } 3347618cc2edSLisandro Dalcin } 3348618cc2edSLisandro Dalcin } 33499566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33509566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33519566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33529566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33539566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3354b51a4376SLisandro Dalcin } 3355b51a4376SLisandro Dalcin 3356b51a4376SLisandro Dalcin /* store matrix values */ 3357b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3358b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33599927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3360b51a4376SLisandro Dalcin } 3361b51a4376SLisandro Dalcin 33629566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33639566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3367b51a4376SLisandro Dalcin } 3368b51a4376SLisandro Dalcin 3369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3370d71ae5a4SJacob Faibussowitsch { 33717f489da9SVaclav Hapla PetscBool isbinary; 33724683f7a4SShri Abhyankar 33734683f7a4SShri Abhyankar PetscFunctionBegin; 33749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33755f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33769566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33784683f7a4SShri Abhyankar } 33794683f7a4SShri Abhyankar 3380133cdb44SSatish Balay /*@ 338111a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3382133cdb44SSatish Balay 3383133cdb44SSatish Balay Input Parameters: 3384a2b725a8SWilliam Gropp + mat - the matrix 3385a2b725a8SWilliam Gropp - fact - factor 3386133cdb44SSatish Balay 338711a5261eSBarry Smith Options Database Key: 338811a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3389fee21e36SBarry Smith 33908c890885SBarry Smith Level: advanced 33918c890885SBarry Smith 339267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3393133cdb44SSatish Balay @*/ 3394d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3395d71ae5a4SJacob Faibussowitsch { 33965bf65638SKris Buschelman PetscFunctionBegin; 3397cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33995bf65638SKris Buschelman } 34005bf65638SKris Buschelman 3401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3402d71ae5a4SJacob Faibussowitsch { 340325fdafccSSatish Balay Mat_MPIBAIJ *baij; 3404133cdb44SSatish Balay 3405133cdb44SSatish Balay PetscFunctionBegin; 3406133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3407133cdb44SSatish Balay baij->ht_fact = fact; 34083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3409133cdb44SSatish Balay } 3410f2a5309cSSatish Balay 3411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3412d71ae5a4SJacob Faibussowitsch { 3413f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3414ab4d48faSStefano Zampini PetscBool flg; 34155fd66863SKarl Rupp 3416f2a5309cSSatish Balay PetscFunctionBegin; 34179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 34185f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 341921e72a00SBarry Smith if (Ad) *Ad = a->A; 342021e72a00SBarry Smith if (Ao) *Ao = a->B; 342121e72a00SBarry Smith if (colmap) *colmap = a->garray; 34223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3423f2a5309cSSatish Balay } 342485535b8eSBarry Smith 342585535b8eSBarry Smith /* 342685535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 342785535b8eSBarry Smith */ 342885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 342985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 343085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 343185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 343285535b8eSBarry Smith #endif 343385535b8eSBarry Smith 34342920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 343585535b8eSBarry Smith /*@C 343611a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 343785535b8eSBarry Smith 3438c3339decSBarry Smith Collective 343985535b8eSBarry Smith 344085535b8eSBarry Smith Input Parameters: 3441fe59aa6dSJacob Faibussowitsch + matin - the matrix 344285535b8eSBarry Smith . min - number of input rows 344385535b8eSBarry Smith . im - input rows 344485535b8eSBarry Smith . nin - number of input columns 344585535b8eSBarry Smith . in - input columns 344685535b8eSBarry Smith . v - numerical values input 344711a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 344885535b8eSBarry Smith 344920f4b53cSBarry Smith Level: advanced 345020f4b53cSBarry Smith 3451fe59aa6dSJacob Faibussowitsch Developer Notes: 345211a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 345385535b8eSBarry Smith 345467be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 345585535b8eSBarry Smith @*/ 345666976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3457d71ae5a4SJacob Faibussowitsch { 345885535b8eSBarry Smith /* convert input arguments to C version */ 345985535b8eSBarry Smith Mat mat = *matin; 346085535b8eSBarry Smith PetscInt m = *min, n = *nin; 346185535b8eSBarry Smith InsertMode addv = *addvin; 346285535b8eSBarry Smith 346385535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 346485535b8eSBarry Smith const MatScalar *value; 346585535b8eSBarry Smith MatScalar *barray = baij->barray; 3466ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 346785535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 346885535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3469d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 347085535b8eSBarry Smith 347185535b8eSBarry Smith PetscFunctionBegin; 347285535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 347326fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34745f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 347685535b8eSBarry Smith if (mat->assembled) { 347785535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 347885535b8eSBarry Smith mat->assembled = PETSC_FALSE; 347985535b8eSBarry Smith } 34809566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 348185535b8eSBarry Smith 348285535b8eSBarry Smith if (!barray) { 34839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 348485535b8eSBarry Smith baij->barray = barray; 348585535b8eSBarry Smith } 348685535b8eSBarry Smith 348726fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 348826fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 348926fbe8dcSKarl Rupp 349085535b8eSBarry Smith for (i = 0; i < m; i++) { 349185535b8eSBarry Smith if (im[i] < 0) continue; 34926bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 349385535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 349485535b8eSBarry Smith row = im[i] - rstart; 349585535b8eSBarry Smith for (j = 0; j < n; j++) { 349685535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 349785535b8eSBarry Smith if ((roworiented) && (n == 1)) { 349885535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 349985535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 350085535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 350185535b8eSBarry Smith } else { /* Here a copy is required */ 350285535b8eSBarry Smith if (roworiented) { 350385535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 350485535b8eSBarry Smith } else { 350585535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 350685535b8eSBarry Smith } 350785535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3508ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 350985535b8eSBarry Smith } 351085535b8eSBarry Smith barray -= bs2; 351185535b8eSBarry Smith } 351285535b8eSBarry Smith 351385535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 351485535b8eSBarry Smith col = in[j] - cstart; 35159566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3516f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3517f7d195e4SLawrence Mitchell continue; 3518f7d195e4SLawrence Mitchell } else { 3519f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 352085535b8eSBarry Smith if (mat->was_assembled) { 352148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 352285535b8eSBarry Smith 352385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 352485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35259371c9d4SSatish Balay { 35269371c9d4SSatish Balay PetscInt data; 3527eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 352808401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 352985535b8eSBarry Smith } 353085535b8eSBarry Smith #else 353108401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 353285535b8eSBarry Smith #endif 353385535b8eSBarry Smith #endif 353485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3535eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 353685535b8eSBarry Smith col = (col - 1) / bs; 353785535b8eSBarry Smith #else 353885535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 353985535b8eSBarry Smith #endif 3540f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35419566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 354285535b8eSBarry Smith col = in[j]; 354385535b8eSBarry Smith } 354426fbe8dcSKarl Rupp } else col = in[j]; 35459566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 354685535b8eSBarry Smith } 354785535b8eSBarry Smith } 354885535b8eSBarry Smith } else { 354985535b8eSBarry Smith if (!baij->donotstash) { 355085535b8eSBarry Smith if (roworiented) { 35519566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 355285535b8eSBarry Smith } else { 35539566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 355485535b8eSBarry Smith } 355585535b8eSBarry Smith } 355685535b8eSBarry Smith } 355785535b8eSBarry Smith } 355885535b8eSBarry Smith 355985535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 356285535b8eSBarry Smith } 3563dfb205c3SBarry Smith 3564dfb205c3SBarry Smith /*@ 3565d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3566dfb205c3SBarry Smith 3567d083f849SBarry Smith Collective 3568dfb205c3SBarry Smith 3569dfb205c3SBarry Smith Input Parameters: 3570dfb205c3SBarry Smith + comm - MPI communicator 3571dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 357211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3573dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3574d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3575d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3576d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3577d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3578483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3579dfb205c3SBarry Smith . j - column indices 3580dfb205c3SBarry Smith - a - matrix values 3581dfb205c3SBarry Smith 3582dfb205c3SBarry Smith Output Parameter: 3583dfb205c3SBarry Smith . mat - the matrix 3584dfb205c3SBarry Smith 3585dfb205c3SBarry Smith Level: intermediate 3586dfb205c3SBarry Smith 3587dfb205c3SBarry Smith Notes: 358867be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3589dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 359011a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3591dfb205c3SBarry Smith 35923adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35933adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35943adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35953adadaf3SJed Brown with column-major ordering within blocks. 35963adadaf3SJed Brown 3597d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3598dfb205c3SBarry Smith 359967be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 36007d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3601dfb205c3SBarry Smith @*/ 3602d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3603d71ae5a4SJacob Faibussowitsch { 3604dfb205c3SBarry Smith PetscFunctionBegin; 36055f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 36065f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 36079566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 36089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 36099566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 36109566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 36119566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 36129566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 36139566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 36149566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 36153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3616dfb205c3SBarry Smith } 3617e561ad89SHong Zhang 3618d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3619d71ae5a4SJacob Faibussowitsch { 3620bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3621bd153df0SHong Zhang PetscInt *indx; 3622bd153df0SHong Zhang PetscScalar *values; 3623e561ad89SHong Zhang 3624e561ad89SHong Zhang PetscFunctionBegin; 36259566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3626bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3627bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36282c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3629bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 363077f764caSHong Zhang PetscMPIInt rank, size; 3631e561ad89SHong Zhang 36329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36339371c9d4SSatish Balay mbs = m / bs; 36349371c9d4SSatish Balay Nbs = N / cbs; 363548a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3636da91a574SPierre Jolivet nbs = n / cbs; 3637e561ad89SHong Zhang 36389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3639d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 364077f764caSHong Zhang 36419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 364377f764caSHong Zhang if (rank == size - 1) { 364477f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36455f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 364677f764caSHong Zhang } 364777f764caSHong Zhang 3648d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3649bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36509566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3651647a6520SHong Zhang nnz = nnz / bs; 3652647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36539566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36549566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3655e561ad89SHong Zhang } 36569566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3657e561ad89SHong Zhang 36589566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36609566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36619566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36629566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36639566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3664d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36659566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3666e561ad89SHong Zhang } 3667e561ad89SHong Zhang 3668bd153df0SHong Zhang /* numeric phase */ 36699566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36709566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3671e561ad89SHong Zhang 3672e561ad89SHong Zhang for (i = 0; i < m; i++) { 36739566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3674e561ad89SHong Zhang Ii = i + rstart; 36759566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36769566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3677e561ad89SHong Zhang } 36789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3681e561ad89SHong Zhang } 3682