179bdfe76SSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <petscblaslapack.h> 465a92638SMatthew G. Knepley #include <petscsf.h> 579bdfe76SSatish Balay 609573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 7ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPIBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 909573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1009573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1109573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1209573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1309573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar,Vec,Vec); 1493fea6afSBarry Smith 154a2ae208SSatish Balay #undef __FUNCT__ 16985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 17985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 187843d17aSBarry Smith { 197843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 20dfbe8321SBarry Smith PetscErrorCode ierr; 21985db425SBarry Smith PetscInt i,*idxb = 0; 2287828ca2SBarry Smith PetscScalar *va,*vb; 237843d17aSBarry Smith Vec vtmp; 247843d17aSBarry Smith 257843d17aSBarry Smith PetscFunctionBegin; 26985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 271ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 28985db425SBarry Smith if (idx) { 2926fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 3026fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 3126fbe8dcSKarl Rupp } 32985db425SBarry Smith } 337843d17aSBarry Smith 34d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 35d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 36985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 371ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 387843d17aSBarry Smith 39d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 4026fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 4126fbe8dcSKarl Rupp va[i] = vb[i]; 4226fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 4326fbe8dcSKarl Rupp } 447843d17aSBarry Smith } 457843d17aSBarry Smith 461ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 471ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 48c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 496bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 507843d17aSBarry Smith PetscFunctionReturn(0); 517843d17aSBarry Smith } 527843d17aSBarry Smith 534a2ae208SSatish Balay #undef __FUNCT__ 544a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 557087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 567fc3c18eSBarry Smith { 577fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 58dfbe8321SBarry Smith PetscErrorCode ierr; 597fc3c18eSBarry Smith 607fc3c18eSBarry Smith PetscFunctionBegin; 617fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 627fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 637fc3c18eSBarry Smith PetscFunctionReturn(0); 647fc3c18eSBarry Smith } 657fc3c18eSBarry Smith 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 687087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 697fc3c18eSBarry Smith { 707fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 71dfbe8321SBarry Smith PetscErrorCode ierr; 727fc3c18eSBarry Smith 737fc3c18eSBarry Smith PetscFunctionBegin; 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 757fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 767fc3c18eSBarry Smith PetscFunctionReturn(0); 777fc3c18eSBarry Smith } 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 82e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 86ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private" 87ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 96e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++) { 983861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 1023bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 109f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11080c1aa95SSatish Balay { \ 11180c1aa95SSatish Balay \ 11280c1aa95SSatish Balay brow = row/bs; \ 11380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 114ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11580c1aa95SSatish Balay bcol = col/bs; \ 11680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 117ab26458aSBarry Smith low = 0; high = nrow; \ 118ab26458aSBarry Smith while (high-low > 3) { \ 119ab26458aSBarry Smith t = (low+high)/2; \ 120ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 121ab26458aSBarry Smith else low = t; \ 122ab26458aSBarry Smith } \ 123ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 127eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 128eada6651SSatish Balay else *bap = value; \ 129ac7a638eSSatish Balay goto a_noinsert; \ 13080c1aa95SSatish Balay } \ 13180c1aa95SSatish Balay } \ 13289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 133e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 134fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13580c1aa95SSatish Balay N = nrow++ - 1; \ 13680c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13780c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13880c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1393eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14080c1aa95SSatish Balay } \ 1413eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14280c1aa95SSatish Balay rp[_i] = bcol; \ 14380c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 144ac7a638eSSatish Balay a_noinsert:; \ 14580c1aa95SSatish Balay ailen[brow] = nrow; \ 14680c1aa95SSatish Balay } 14757b952d6SSatish Balay 148ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 149ac7a638eSSatish Balay { \ 150ac7a638eSSatish Balay brow = row/bs; \ 151ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 152ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 153ac7a638eSSatish Balay bcol = col/bs; \ 154ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 155ac7a638eSSatish Balay low = 0; high = nrow; \ 156ac7a638eSSatish Balay while (high-low > 3) { \ 157ac7a638eSSatish Balay t = (low+high)/2; \ 158ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 159ac7a638eSSatish Balay else low = t; \ 160ac7a638eSSatish Balay } \ 161ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 162ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 163ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 164ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 165ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 166ac7a638eSSatish Balay else *bap = value; \ 167ac7a638eSSatish Balay goto b_noinsert; \ 168ac7a638eSSatish Balay } \ 169ac7a638eSSatish Balay } \ 17089280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 171e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 172fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 173ac7a638eSSatish Balay N = nrow++ - 1; \ 174ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 175ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 176ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1773eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 178ac7a638eSSatish Balay } \ 1793eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 180ac7a638eSSatish Balay rp[_i] = bcol; \ 181ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 182ac7a638eSSatish Balay b_noinsert:; \ 183ac7a638eSSatish Balay bilen[brow] = nrow; \ 184ac7a638eSSatish Balay } 185ac7a638eSSatish Balay 1864a2ae208SSatish Balay #undef __FUNCT__ 1874a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 188b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 18957b952d6SSatish Balay { 19057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19193fea6afSBarry Smith MatScalar value; 192ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 193dfbe8321SBarry Smith PetscErrorCode ierr; 194b24ad042SBarry Smith PetscInt i,j,row,col; 195d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 196d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 197d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 19857b952d6SSatish Balay 199eada6651SSatish Balay /* Some Variables required in the macro */ 20080c1aa95SSatish Balay Mat A = baij->A; 20180c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 202b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2033eda8832SBarry Smith MatScalar *aa =a->a; 204ac7a638eSSatish Balay 205ac7a638eSSatish Balay Mat B = baij->B; 206ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 207b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2083eda8832SBarry Smith MatScalar *ba =b->a; 209ac7a638eSSatish Balay 210b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 211b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2123eda8832SBarry Smith MatScalar *ap,*bap; 21380c1aa95SSatish Balay 214d64ed03dSBarry Smith PetscFunctionBegin; 21571fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 21657b952d6SSatish Balay for (i=0; i<m; i++) { 2175ef9f2a5SBarry Smith if (im[i] < 0) continue; 2182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 219e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 220639f9d9dSBarry Smith #endif 22157b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22257b952d6SSatish Balay row = im[i] - rstart_orig; 22357b952d6SSatish Balay for (j=0; j<n; j++) { 22457b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 22557b952d6SSatish Balay col = in[j] - cstart_orig; 226db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 227db4deed7SKarl Rupp else value = v[i+j*m]; 228f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22980c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23073959e64SBarry Smith } else if (in[j] < 0) continue; 2312515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 232660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 233639f9d9dSBarry Smith #endif 23457b952d6SSatish Balay else { 23557b952d6SSatish Balay if (mat->was_assembled) { 236905e6a2fSBarry Smith if (!baij->colmap) { 237ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 238905e6a2fSBarry Smith } 239aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2400f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 241bba1ac68SSatish Balay col = col - 1; 24248e59246SSatish Balay #else 243bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24448e59246SSatish Balay #endif 245c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 246ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2478295de27SSatish Balay col = in[j]; 2489bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2499bf004c3SSatish Balay B = baij->B; 2509bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2519bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2529bf004c3SSatish Balay ba =b->a; 253c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 254c9ef50b2SBarry Smith else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 256db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 257db4deed7SKarl Rupp else value = v[i+j*m]; 25890da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25990da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 26057b952d6SSatish Balay } 26157b952d6SSatish Balay } 262d64ed03dSBarry Smith } else { 2634cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 26490f02eecSBarry Smith if (!baij->donotstash) { 2655080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 266ff2fd236SBarry Smith if (roworiented) { 267b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 268ff2fd236SBarry Smith } else { 269b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 27057b952d6SSatish Balay } 27157b952d6SSatish Balay } 27257b952d6SSatish Balay } 27390f02eecSBarry Smith } 2743a40ed3dSBarry Smith PetscFunctionReturn(0); 27557b952d6SSatish Balay } 27657b952d6SSatish Balay 2774a2ae208SSatish Balay #undef __FUNCT__ 27897e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27997e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 280ab26458aSBarry Smith { 281ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 282dd6ea824SBarry Smith const PetscScalar *value; 283f15d580aSBarry Smith MatScalar *barray = baij->barray; 284ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 285dfbe8321SBarry Smith PetscErrorCode ierr; 286899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 287899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 288d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 289ab26458aSBarry Smith 290b16ae2b1SBarry Smith PetscFunctionBegin; 29130793edcSSatish Balay if (!barray) { 29282502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29382502324SSatish Balay baij->barray = barray; 29430793edcSSatish Balay } 29530793edcSSatish Balay 29626fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 29726fbe8dcSKarl Rupp else stepval = (m-1)*bs; 29826fbe8dcSKarl Rupp 299ab26458aSBarry Smith for (i=0; i<m; i++) { 3005ef9f2a5SBarry Smith if (im[i] < 0) continue; 3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 302e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 303ab26458aSBarry Smith #endif 304ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 305ab26458aSBarry Smith row = im[i] - rstart; 306ab26458aSBarry Smith for (j=0; j<n; j++) { 30715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 309f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31015b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 311f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31215b57d14SSatish Balay } else { /* Here a copy is required */ 313ab26458aSBarry Smith if (roworiented) { 31453ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 315ab26458aSBarry Smith } else { 31653ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 317abef11f7SSatish Balay } 31853ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 31926fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 32053ef36baSBarry Smith barray += bs; 32147513183SBarry Smith } 32230793edcSSatish Balay barray -= bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 32826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3292515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 330cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 331ab26458aSBarry Smith #endif 332ab26458aSBarry Smith else { 333ab26458aSBarry Smith if (mat->was_assembled) { 334ab26458aSBarry Smith if (!baij->colmap) { 335ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 336ab26458aSBarry Smith } 337a5eb4965SSatish Balay 3382515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 339aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 340b24ad042SBarry Smith { PetscInt data; 3410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 342e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 343fa46199cSSatish Balay } 34448e59246SSatish Balay #else 345e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 346a5eb4965SSatish Balay #endif 34748e59246SSatish Balay #endif 348aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3490f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 350fa46199cSSatish Balay col = (col - 1)/bs; 35148e59246SSatish Balay #else 352a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35348e59246SSatish Balay #endif 3540e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 355ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 356ab26458aSBarry Smith col = in[j]; 3570e9bae81SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]); 358db4deed7SKarl Rupp } else col = in[j]; 35997e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 360ab26458aSBarry Smith } 361ab26458aSBarry Smith } 362d64ed03dSBarry Smith } else { 3634cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 364ab26458aSBarry Smith if (!baij->donotstash) { 365ff2fd236SBarry Smith if (roworiented) { 3666fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 367ff2fd236SBarry Smith } else { 3686fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 369ff2fd236SBarry Smith } 370abef11f7SSatish Balay } 371ab26458aSBarry Smith } 372ab26458aSBarry Smith } 3733a40ed3dSBarry Smith PetscFunctionReturn(0); 374ab26458aSBarry Smith } 3756fa18ffdSBarry Smith 3760bdbc534SSatish Balay #define HASH_KEY 0.6180339887 377b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 378b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 379b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3804a2ae208SSatish Balay #undef __FUNCT__ 38197e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38297e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3830bdbc534SSatish Balay { 3840bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 385ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 386dfbe8321SBarry Smith PetscErrorCode ierr; 387b24ad042SBarry Smith PetscInt i,j,row,col; 388d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 389d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 390d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 391329f5518SBarry Smith PetscReal tmp; 3923eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3932515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 394b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3954a15367fSSatish Balay #endif 3960bdbc534SSatish Balay 3970bdbc534SSatish Balay PetscFunctionBegin; 39871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 3990bdbc534SSatish Balay for (i=0; i<m; i++) { 4002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 401e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 402e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4030bdbc534SSatish Balay #endif 4040bdbc534SSatish Balay row = im[i]; 405c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4060bdbc534SSatish Balay for (j=0; j<n; j++) { 4070bdbc534SSatish Balay col = in[j]; 408db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 409db4deed7SKarl Rupp else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 423f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 424187ce0cbSSatish Balay } 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay #else 427c2760754SSatish Balay if (HT[idx] != key) { 428c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 429c2760754SSatish Balay if (idx == size) { 430c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 431f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 432c2760754SSatish Balay } 433c2760754SSatish Balay } 434187ce0cbSSatish Balay #endif 435c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 436c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 437c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4380bdbc534SSatish Balay } 43926fbe8dcSKarl Rupp } else if (!baij->donotstash) { 440ff2fd236SBarry Smith if (roworiented) { 441b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 442ff2fd236SBarry Smith } else { 443b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4440bdbc534SSatish Balay } 4450bdbc534SSatish Balay } 4460bdbc534SSatish Balay } 4472515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 448187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 449187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 450187ce0cbSSatish Balay #endif 4510bdbc534SSatish Balay PetscFunctionReturn(0); 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay 4544a2ae208SSatish Balay #undef __FUNCT__ 45597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 45697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4570bdbc534SSatish Balay { 4580bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 459ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 460dfbe8321SBarry Smith PetscErrorCode ierr; 461b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 462899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 463d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 464b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 465329f5518SBarry Smith PetscReal tmp; 4663eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 467dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4682515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 469b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4704a15367fSSatish Balay #endif 4710bdbc534SSatish Balay 472d0a41580SSatish Balay PetscFunctionBegin; 47326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 47426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 47526fbe8dcSKarl Rupp 4760bdbc534SSatish Balay for (i=0; i<m; i++) { 4772515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 478e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 479e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4800bdbc534SSatish Balay #endif 4810bdbc534SSatish Balay row = im[i]; 482ab715e2cSSatish Balay v_t = v + i*nbs2; 483c2760754SSatish Balay if (row >= rstart && row < rend) { 4840bdbc534SSatish Balay for (j=0; j<n; j++) { 4850bdbc534SSatish Balay col = in[j]; 4860bdbc534SSatish Balay 4870bdbc534SSatish Balay /* Look up into the Hash Table */ 488c2760754SSatish Balay key = row*Nbs+col+1; 489c2760754SSatish Balay h1 = HASH(size,key,tmp); 4900bdbc534SSatish Balay 491c2760754SSatish Balay idx = h1; 4922515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 493187ce0cbSSatish Balay total_ct++; 494187ce0cbSSatish Balay insert_ct++; 495187ce0cbSSatish Balay if (HT[idx] != key) { 496187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 497187ce0cbSSatish Balay if (idx == size) { 498187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 499f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 500187ce0cbSSatish Balay } 501187ce0cbSSatish Balay } 502187ce0cbSSatish Balay #else 503c2760754SSatish Balay if (HT[idx] != key) { 504c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 505c2760754SSatish Balay if (idx == size) { 506c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 507f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 508c2760754SSatish Balay } 509c2760754SSatish Balay } 510187ce0cbSSatish Balay #endif 511c2760754SSatish Balay baij_a = HD[idx]; 5120bdbc534SSatish Balay if (roworiented) { 513c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 514187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 515187ce0cbSSatish Balay value = v_t; 516187ce0cbSSatish Balay v_t += bs; 517fef45726SSatish Balay if (addv == ADD_VALUES) { 518c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 519c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 520fef45726SSatish Balay baij_a[jj] += *value++; 521b4cc0f5aSSatish Balay } 522b4cc0f5aSSatish Balay } 523fef45726SSatish Balay } else { 524c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 525c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 526fef45726SSatish Balay baij_a[jj] = *value++; 527fef45726SSatish Balay } 528fef45726SSatish Balay } 529fef45726SSatish Balay } 5300bdbc534SSatish Balay } else { 5310bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 532fef45726SSatish Balay if (addv == ADD_VALUES) { 533b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5340bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 535fef45726SSatish Balay baij_a[jj] += *value++; 536fef45726SSatish Balay } 537fef45726SSatish Balay } 538fef45726SSatish Balay } else { 539fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 540fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 541fef45726SSatish Balay baij_a[jj] = *value++; 542fef45726SSatish Balay } 543b4cc0f5aSSatish Balay } 5440bdbc534SSatish Balay } 5450bdbc534SSatish Balay } 5460bdbc534SSatish Balay } 5470bdbc534SSatish Balay } else { 5480bdbc534SSatish Balay if (!baij->donotstash) { 5490bdbc534SSatish Balay if (roworiented) { 5508798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5510bdbc534SSatish Balay } else { 5528798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5530bdbc534SSatish Balay } 5540bdbc534SSatish Balay } 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay } 5572515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 558187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 559187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 560187ce0cbSSatish Balay #endif 5610bdbc534SSatish Balay PetscFunctionReturn(0); 5620bdbc534SSatish Balay } 563133cdb44SSatish Balay 5644a2ae208SSatish Balay #undef __FUNCT__ 5654a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 566b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 567d6de1c52SSatish Balay { 568d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5696849ba73SBarry Smith PetscErrorCode ierr; 570d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 571d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 572d6de1c52SSatish Balay 573133cdb44SSatish Balay PetscFunctionBegin; 574d6de1c52SSatish Balay for (i=0; i<m; i++) { 575e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 576e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 577d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 578d6de1c52SSatish Balay row = idxm[i] - bsrstart; 579d6de1c52SSatish Balay for (j=0; j<n; j++) { 580e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 581e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 582d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 583d6de1c52SSatish Balay col = idxn[j] - bscstart; 58498dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 585d64ed03dSBarry Smith } else { 586905e6a2fSBarry Smith if (!baij->colmap) { 587ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 588905e6a2fSBarry Smith } 589aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 5900f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 591fa46199cSSatish Balay data--; 59248e59246SSatish Balay #else 59348e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 59448e59246SSatish Balay #endif 59548e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 596d9d09a02SSatish Balay else { 59748e59246SSatish Balay col = data + idxn[j]%bs; 59898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 599d6de1c52SSatish Balay } 600d6de1c52SSatish Balay } 601d6de1c52SSatish Balay } 602f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 603d6de1c52SSatish Balay } 6043a40ed3dSBarry Smith PetscFunctionReturn(0); 605d6de1c52SSatish Balay } 606d6de1c52SSatish Balay 6074a2ae208SSatish Balay #undef __FUNCT__ 6084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 609dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 610d6de1c52SSatish Balay { 611d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 612d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 613dfbe8321SBarry Smith PetscErrorCode ierr; 614d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 615329f5518SBarry Smith PetscReal sum = 0.0; 6163eda8832SBarry Smith MatScalar *v; 617d6de1c52SSatish Balay 618d64ed03dSBarry Smith PetscFunctionBegin; 619d6de1c52SSatish Balay if (baij->size == 1) { 620064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 621d6de1c52SSatish Balay } else { 622d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 623d6de1c52SSatish Balay v = amat->a; 6248a62d963SHong Zhang nz = amat->nz*bs2; 6258a62d963SHong Zhang for (i=0; i<nz; i++) { 626329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 627d6de1c52SSatish Balay } 628d6de1c52SSatish Balay v = bmat->a; 6298a62d963SHong Zhang nz = bmat->nz*bs2; 6308a62d963SHong Zhang for (i=0; i<nz; i++) { 631329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 632d6de1c52SSatish Balay } 633ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6348f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6358a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6368a62d963SHong Zhang PetscReal *tmp,*tmp2; 637899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 638*dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr); 639d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6408a62d963SHong Zhang v = amat->a; jj = amat->j; 6418a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6428a62d963SHong Zhang for (j=0; j<bs; j++) { 6438a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6448a62d963SHong Zhang for (row=0; row<bs; row++) { 6458a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6468a62d963SHong Zhang } 6478a62d963SHong Zhang } 6488a62d963SHong Zhang jj++; 6498a62d963SHong Zhang } 6508a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6518a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6528a62d963SHong Zhang for (j=0; j<bs; j++) { 6538a62d963SHong Zhang col = bs*garray[*jj] + j; 6548a62d963SHong Zhang for (row=0; row<bs; row++) { 6558a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6568a62d963SHong Zhang } 6578a62d963SHong Zhang } 6588a62d963SHong Zhang jj++; 6598a62d963SHong Zhang } 660ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6618a62d963SHong Zhang *nrm = 0.0; 662d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6638a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6648a62d963SHong Zhang } 665fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6668a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 667577dd1f9SKris Buschelman PetscReal *sums; 668cb9801acSJed Brown ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr); 6698a62d963SHong Zhang sum = 0.0; 6708a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6718a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6728a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6738a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6748a62d963SHong Zhang for (i=0; i<nz; i++) { 6758a62d963SHong Zhang for (col=0; col<bs; col++) { 6768a62d963SHong Zhang for (row=0; row<bs; row++) { 6778a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6788a62d963SHong Zhang } 6798a62d963SHong Zhang } 6808a62d963SHong Zhang } 6818a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 6828a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 6838a62d963SHong Zhang for (i=0; i<nz; i++) { 6848a62d963SHong Zhang for (col=0; col<bs; col++) { 6858a62d963SHong Zhang for (row=0; row<bs; row++) { 6868a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6878a62d963SHong Zhang } 6888a62d963SHong Zhang } 6898a62d963SHong Zhang } 6908a62d963SHong Zhang for (row=0; row<bs; row++) { 6918a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 6928a62d963SHong Zhang } 6938a62d963SHong Zhang } 694ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 695577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 696ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 697d64ed03dSBarry Smith } 6983a40ed3dSBarry Smith PetscFunctionReturn(0); 699d6de1c52SSatish Balay } 70057b952d6SSatish Balay 701fef45726SSatish Balay /* 702fef45726SSatish Balay Creates the hash table, and sets the table 703fef45726SSatish Balay This table is created only once. 704fef45726SSatish Balay If new entried need to be added to the matrix 705fef45726SSatish Balay then the hash table has to be destroyed and 706fef45726SSatish Balay recreated. 707fef45726SSatish Balay */ 7084a2ae208SSatish Balay #undef __FUNCT__ 7094a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 710dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 711596b8d2eSBarry Smith { 712596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 713596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 714596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 715b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7166849ba73SBarry Smith PetscErrorCode ierr; 717fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 718899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 719b24ad042SBarry Smith PetscInt *HT,key; 7203eda8832SBarry Smith MatScalar **HD; 721329f5518SBarry Smith PetscReal tmp; 7226cf91177SBarry Smith #if defined(PETSC_USE_INFO) 723b24ad042SBarry Smith PetscInt ct=0,max=0; 7244a15367fSSatish Balay #endif 725fef45726SSatish Balay 726d64ed03dSBarry Smith PetscFunctionBegin; 727fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 728fef45726SSatish Balay 729fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 730fca92195SBarry Smith ht_size = baij->ht_size; 7310bdbc534SSatish Balay 732fef45726SSatish Balay /* Allocate Memory for Hash Table */ 733*dcca6d9dSJed Brown ierr = PetscMalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 734fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 735fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 736b9e4cc15SSatish Balay HD = baij->hd; 737a07cd24cSSatish Balay HT = baij->ht; 738b9e4cc15SSatish Balay 739596b8d2eSBarry Smith /* Loop Over A */ 7400bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 741596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7420bdbc534SSatish Balay row = i+rstart; 7430bdbc534SSatish Balay col = aj[j]+cstart; 744596b8d2eSBarry Smith 745187ce0cbSSatish Balay key = row*Nbs + col + 1; 746fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 747fca92195SBarry Smith for (k=0; k<ht_size; k++) { 748fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 749fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 750fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 751596b8d2eSBarry Smith break; 7526cf91177SBarry Smith #if defined(PETSC_USE_INFO) 753187ce0cbSSatish Balay } else { 754187ce0cbSSatish Balay ct++; 755187ce0cbSSatish Balay #endif 756596b8d2eSBarry Smith } 757187ce0cbSSatish Balay } 7586cf91177SBarry Smith #if defined(PETSC_USE_INFO) 759187ce0cbSSatish Balay if (k> max) max = k; 760187ce0cbSSatish Balay #endif 761596b8d2eSBarry Smith } 762596b8d2eSBarry Smith } 763596b8d2eSBarry Smith /* Loop Over B */ 7640bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 765596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7660bdbc534SSatish Balay row = i+rstart; 7670bdbc534SSatish Balay col = garray[bj[j]]; 768187ce0cbSSatish Balay key = row*Nbs + col + 1; 769fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 770fca92195SBarry Smith for (k=0; k<ht_size; k++) { 771fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 772fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 773fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 774596b8d2eSBarry Smith break; 7756cf91177SBarry Smith #if defined(PETSC_USE_INFO) 776187ce0cbSSatish Balay } else { 777187ce0cbSSatish Balay ct++; 778187ce0cbSSatish Balay #endif 779596b8d2eSBarry Smith } 780187ce0cbSSatish Balay } 7816cf91177SBarry Smith #if defined(PETSC_USE_INFO) 782187ce0cbSSatish Balay if (k> max) max = k; 783187ce0cbSSatish Balay #endif 784596b8d2eSBarry Smith } 785596b8d2eSBarry Smith } 786596b8d2eSBarry Smith 787596b8d2eSBarry Smith /* Print Summary */ 7886cf91177SBarry Smith #if defined(PETSC_USE_INFO) 789fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 79026fbe8dcSKarl Rupp if (HT[i]) j++; 791c38d4ed2SBarry Smith } 7921e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 793187ce0cbSSatish Balay #endif 7943a40ed3dSBarry Smith PetscFunctionReturn(0); 795596b8d2eSBarry Smith } 79657b952d6SSatish Balay 7974a2ae208SSatish Balay #undef __FUNCT__ 7984a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 799dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 800bbb85fb3SSatish Balay { 801bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 802dfbe8321SBarry Smith PetscErrorCode ierr; 803b24ad042SBarry Smith PetscInt nstash,reallocs; 804bbb85fb3SSatish Balay InsertMode addv; 805bbb85fb3SSatish Balay 806bbb85fb3SSatish Balay PetscFunctionBegin; 80726fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 808bbb85fb3SSatish Balay 809bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 810ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 811ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 812bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 813bbb85fb3SSatish Balay 814d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8151e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8168798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8171e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 81846680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8191e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 820bbb85fb3SSatish Balay PetscFunctionReturn(0); 821bbb85fb3SSatish Balay } 822bbb85fb3SSatish Balay 8234a2ae208SSatish Balay #undef __FUNCT__ 8244a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 825dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 826bbb85fb3SSatish Balay { 827bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 82891c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 8296849ba73SBarry Smith PetscErrorCode ierr; 830b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 831e44c0bd4SBarry Smith PetscInt *row,*col; 832ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8333eda8832SBarry Smith MatScalar *val; 834bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 835b24ad042SBarry Smith PetscMPIInt n; 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay PetscFunctionBegin; 8385fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8394cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 840a2d1c673SSatish Balay while (1) { 8418798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 842a2d1c673SSatish Balay if (!flg) break; 843a2d1c673SSatish Balay 844bbb85fb3SSatish Balay for (i=0; i<n;) { 845bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 84626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 84726fbe8dcSKarl Rupp if (row[j] != rstart) break; 84826fbe8dcSKarl Rupp } 849bbb85fb3SSatish Balay if (j < n) ncols = j-i; 850bbb85fb3SSatish Balay else ncols = n-i; 851bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 85297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 853bbb85fb3SSatish Balay i = j; 854bbb85fb3SSatish Balay } 855bbb85fb3SSatish Balay } 8568798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 857a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 858a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 859a2d1c673SSatish Balay restore the original flags */ 860a2d1c673SSatish Balay r1 = baij->roworiented; 861a2d1c673SSatish Balay r2 = a->roworiented; 86291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 86326fbe8dcSKarl Rupp 8647c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8657c922b88SBarry Smith a->roworiented = PETSC_FALSE; 86626fbe8dcSKarl Rupp 86791c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 868a2d1c673SSatish Balay while (1) { 8698798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 870a2d1c673SSatish Balay if (!flg) break; 871a2d1c673SSatish Balay 872a2d1c673SSatish Balay for (i=0; i<n;) { 873a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 87526fbe8dcSKarl Rupp if (row[j] != rstart) break; 87626fbe8dcSKarl Rupp } 877a2d1c673SSatish Balay if (j < n) ncols = j-i; 878a2d1c673SSatish Balay else ncols = n-i; 87997e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 880a2d1c673SSatish Balay i = j; 881a2d1c673SSatish Balay } 882a2d1c673SSatish Balay } 8838798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 88426fbe8dcSKarl Rupp 885a2d1c673SSatish Balay baij->roworiented = r1; 886a2d1c673SSatish Balay a->roworiented = r2; 88726fbe8dcSKarl Rupp 88891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 889bbb85fb3SSatish Balay } 890bbb85fb3SSatish Balay 891bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 892bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 893bbb85fb3SSatish Balay 894bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 895bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 896bbb85fb3SSatish Balay /* 897bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 898bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 899bbb85fb3SSatish Balay */ 900bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 901ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 902bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 903ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 904bbb85fb3SSatish Balay } 905bbb85fb3SSatish Balay } 906bbb85fb3SSatish Balay 907bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 908bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 909bbb85fb3SSatish Balay } 910bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 911bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 912bbb85fb3SSatish Balay 9136cf91177SBarry Smith #if defined(PETSC_USE_INFO) 914bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9151e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 91626fbe8dcSKarl Rupp 917bbb85fb3SSatish Balay baij->ht_total_ct = 0; 918bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 919bbb85fb3SSatish Balay } 920bbb85fb3SSatish Balay #endif 921bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 922bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 92326fbe8dcSKarl Rupp 924bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 925bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 926bbb85fb3SSatish Balay } 927bbb85fb3SSatish Balay 928fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 92926fbe8dcSKarl Rupp 930606d414cSSatish Balay baij->rowvalues = 0; 931bbb85fb3SSatish Balay PetscFunctionReturn(0); 932bbb85fb3SSatish Balay } 93357b952d6SSatish Balay 9349804daf3SBarry Smith #include <petscdraw.h> 9354a2ae208SSatish Balay #undef __FUNCT__ 9364a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9376849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 93857b952d6SSatish Balay { 93957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 940dfbe8321SBarry Smith PetscErrorCode ierr; 941b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 942d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 943ace3abfcSBarry Smith PetscBool iascii,isdraw; 944b0a32e0cSBarry Smith PetscViewer sviewer; 945f3ef73ceSBarry Smith PetscViewerFormat format; 94657b952d6SSatish Balay 947d64ed03dSBarry Smith PetscFunctionBegin; 948251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 949251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 95032077d6dSBarry Smith if (iascii) { 951b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 952456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9534e220ebcSLois Curfman McInnes MatInfo info; 954ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 955d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9567b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 95777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 95816608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 959d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 960e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 961d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 962e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 963b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9647b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 96507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 96657b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9673a40ed3dSBarry Smith PetscFunctionReturn(0); 968fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 96977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9703a40ed3dSBarry Smith PetscFunctionReturn(0); 97104929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 97204929863SHong Zhang PetscFunctionReturn(0); 97357b952d6SSatish Balay } 97457b952d6SSatish Balay } 97557b952d6SSatish Balay 9760f5bd95cSBarry Smith if (isdraw) { 977b0a32e0cSBarry Smith PetscDraw draw; 978ace3abfcSBarry Smith PetscBool isnull; 979b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 980b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 98157b952d6SSatish Balay } 98257b952d6SSatish Balay 98357b952d6SSatish Balay if (size == 1) { 9847adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 98557b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 986d64ed03dSBarry Smith } else { 98757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 98857b952d6SSatish Balay Mat A; 98957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 990d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 9913eda8832SBarry Smith MatScalar *a; 99257b952d6SSatish Balay 993f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 994f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 995ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 99657b952d6SSatish Balay if (!rank) { 997f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 998d64ed03dSBarry Smith } else { 999f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 100057b952d6SSatish Balay } 1001f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 10020298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 10032b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 10043bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 100557b952d6SSatish Balay 100657b952d6SSatish Balay /* copy over the A part */ 100757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 100857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1009b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 101057b952d6SSatish Balay 101157b952d6SSatish Balay for (i=0; i<mbs; i++) { 1012899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 101326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 101457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1015899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 101657b952d6SSatish Balay for (k=0; k<bs; k++) { 101797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1018cee3aa6bSSatish Balay col++; a += bs; 101957b952d6SSatish Balay } 102057b952d6SSatish Balay } 102157b952d6SSatish Balay } 102257b952d6SSatish Balay /* copy over the B part */ 102357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 102457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 102557b952d6SSatish Balay for (i=0; i<mbs; i++) { 1026899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 102726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 102857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 102957b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 103057b952d6SSatish Balay for (k=0; k<bs; k++) { 103197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1032cee3aa6bSSatish Balay col++; a += bs; 103357b952d6SSatish Balay } 103457b952d6SSatish Balay } 103557b952d6SSatish Balay } 1036606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10376d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10386d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 103955843e3eSBarry Smith /* 104055843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1041b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 104255843e3eSBarry Smith */ 1043b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1044f14a1c24SBarry Smith if (!rank) { 10457adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10467566de4bSShri Abhyankar /* Set the type name to MATMPIBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqBAIJ_ASCII()*/ 10477566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPIBAIJ*)(A->data))->A)->type_name,MATMPIBAIJ); 10486831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 104957b952d6SSatish Balay } 1050b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 10516bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 105257b952d6SSatish Balay } 10533a40ed3dSBarry Smith PetscFunctionReturn(0); 105457b952d6SSatish Balay } 105557b952d6SSatish Balay 10564a2ae208SSatish Balay #undef __FUNCT__ 1057660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary" 1058660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1059660746e0SBarry Smith { 1060660746e0SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 1061660746e0SBarry Smith Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)a->A->data; 1062660746e0SBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 1063660746e0SBarry Smith PetscErrorCode ierr; 10645f48b12bSBarry Smith PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 1065e96a6426SSatish Balay PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 1066660746e0SBarry Smith int fd; 1067660746e0SBarry Smith PetscScalar *column_values; 1068660746e0SBarry Smith FILE *file; 1069660746e0SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1070638eb2ebSBarry Smith PetscInt message_count,flowcontrolcount; 1071660746e0SBarry Smith 1072660746e0SBarry Smith PetscFunctionBegin; 1073ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1074ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 1075660746e0SBarry Smith nz = bs2*(A->nz + B->nz); 1076660746e0SBarry Smith rlen = mat->rmap->n; 1077660746e0SBarry Smith if (!rank) { 1078660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1079660746e0SBarry Smith header[1] = mat->rmap->N; 1080660746e0SBarry Smith header[2] = mat->cmap->N; 108126fbe8dcSKarl Rupp 1082ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1083660746e0SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1084660746e0SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1085660746e0SBarry Smith /* get largest number of rows any processor has */ 1086660746e0SBarry Smith range = mat->rmap->range; 1087660746e0SBarry Smith for (i=1; i<size; i++) { 1088660746e0SBarry Smith rlen = PetscMax(rlen,range[i+1] - range[i]); 1089660746e0SBarry Smith } 1090660746e0SBarry Smith } else { 1091ce94432eSBarry Smith ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1092660746e0SBarry Smith } 1093660746e0SBarry Smith 1094660746e0SBarry Smith ierr = PetscMalloc((rlen/bs)*sizeof(PetscInt),&crow_lens);CHKERRQ(ierr); 1095660746e0SBarry Smith /* compute lengths of each row */ 1096660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1097660746e0SBarry Smith crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1098660746e0SBarry Smith } 1099660746e0SBarry Smith /* store the row lengths to the file */ 1100638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1101660746e0SBarry Smith if (!rank) { 1102660746e0SBarry Smith MPI_Status status; 1103660746e0SBarry Smith ierr = PetscMalloc(rlen*sizeof(PetscInt),&row_lens);CHKERRQ(ierr); 1104660746e0SBarry Smith rlen = (range[1] - range[0])/bs; 1105660746e0SBarry Smith for (i=0; i<rlen; i++) { 1106660746e0SBarry Smith for (j=0; j<bs; j++) { 1107660746e0SBarry Smith row_lens[i*bs+j] = bs*crow_lens[i]; 1108660746e0SBarry Smith } 1109660746e0SBarry Smith } 1110660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1111660746e0SBarry Smith for (i=1; i<size; i++) { 1112660746e0SBarry Smith rlen = (range[i+1] - range[i])/bs; 1113639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1114ce94432eSBarry Smith ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1115660746e0SBarry Smith for (k=0; k<rlen; k++) { 1116660746e0SBarry Smith for (j=0; j<bs; j++) { 1117660746e0SBarry Smith row_lens[k*bs+j] = bs*crow_lens[k]; 1118660746e0SBarry Smith } 1119660746e0SBarry Smith } 1120660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1121660746e0SBarry Smith } 1122639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1123660746e0SBarry Smith ierr = PetscFree(row_lens);CHKERRQ(ierr); 1124660746e0SBarry Smith } else { 1125639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1126ce94432eSBarry Smith ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1127639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1128660746e0SBarry Smith } 1129660746e0SBarry Smith ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1130660746e0SBarry Smith 1131660746e0SBarry Smith /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1132660746e0SBarry Smith information needed to make it for each row from a block row. This does require more communication but still not more than 1133660746e0SBarry Smith the communication needed for the nonzero values */ 1134660746e0SBarry Smith nzmax = nz; /* space a largest processor needs */ 1135ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1136660746e0SBarry Smith ierr = PetscMalloc(nzmax*sizeof(PetscInt),&column_indices);CHKERRQ(ierr); 1137660746e0SBarry Smith cnt = 0; 1138660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1139660746e0SBarry Smith pcnt = cnt; 1140660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1141660746e0SBarry Smith if ((col = garray[B->j[j]]) > cstart) break; 1142660746e0SBarry Smith for (l=0; l<bs; l++) { 1143660746e0SBarry Smith column_indices[cnt++] = bs*col+l; 1144660746e0SBarry Smith } 1145660746e0SBarry Smith } 1146660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1147660746e0SBarry Smith for (l=0; l<bs; l++) { 1148660746e0SBarry Smith column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1149660746e0SBarry Smith } 1150660746e0SBarry Smith } 1151660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1152660746e0SBarry Smith for (l=0; l<bs; l++) { 1153660746e0SBarry Smith column_indices[cnt++] = bs*garray[B->j[j]]+l; 1154660746e0SBarry Smith } 1155660746e0SBarry Smith } 1156660746e0SBarry Smith len = cnt - pcnt; 1157660746e0SBarry Smith for (k=1; k<bs; k++) { 1158660746e0SBarry Smith ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1159660746e0SBarry Smith cnt += len; 1160660746e0SBarry Smith } 1161660746e0SBarry Smith } 1162660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1163660746e0SBarry Smith 1164660746e0SBarry Smith /* store the columns to the file */ 1165638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1166660746e0SBarry Smith if (!rank) { 1167660746e0SBarry Smith MPI_Status status; 1168660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1169660746e0SBarry Smith for (i=1; i<size; i++) { 1170639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1171ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1172ce94432eSBarry Smith ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1173660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1174660746e0SBarry Smith } 1175639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1176660746e0SBarry Smith } else { 1177639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1178ce94432eSBarry Smith ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1179ce94432eSBarry Smith ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1180639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1181660746e0SBarry Smith } 1182660746e0SBarry Smith ierr = PetscFree(column_indices);CHKERRQ(ierr); 1183660746e0SBarry Smith 1184660746e0SBarry Smith /* load up the numerical values */ 1185660746e0SBarry Smith ierr = PetscMalloc(nzmax*sizeof(PetscScalar),&column_values);CHKERRQ(ierr); 1186660746e0SBarry Smith cnt = 0; 1187660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1188660746e0SBarry Smith rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1189660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1190660746e0SBarry Smith if (garray[B->j[j]] > cstart) break; 1191660746e0SBarry Smith for (l=0; l<bs; l++) { 1192660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1193660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1194660746e0SBarry Smith } 1195660746e0SBarry Smith } 1196660746e0SBarry Smith cnt += bs; 1197660746e0SBarry Smith } 1198660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1199660746e0SBarry Smith for (l=0; l<bs; l++) { 1200660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1201660746e0SBarry Smith column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1202660746e0SBarry Smith } 1203660746e0SBarry Smith } 1204660746e0SBarry Smith cnt += bs; 1205660746e0SBarry Smith } 1206660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1207660746e0SBarry Smith for (l=0; l<bs; l++) { 1208660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1209660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1210660746e0SBarry Smith } 1211660746e0SBarry Smith } 1212660746e0SBarry Smith cnt += bs; 1213660746e0SBarry Smith } 1214660746e0SBarry Smith cnt += (bs-1)*rlen; 1215660746e0SBarry Smith } 1216660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1217660746e0SBarry Smith 1218660746e0SBarry Smith /* store the column values to the file */ 1219638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1220660746e0SBarry Smith if (!rank) { 1221660746e0SBarry Smith MPI_Status status; 1222660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1223660746e0SBarry Smith for (i=1; i<size; i++) { 1224639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1225ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1226ce94432eSBarry Smith ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1227660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1228660746e0SBarry Smith } 1229639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1230660746e0SBarry Smith } else { 1231639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1232ce94432eSBarry Smith ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1233ce94432eSBarry Smith ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1234639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1235660746e0SBarry Smith } 1236660746e0SBarry Smith ierr = PetscFree(column_values);CHKERRQ(ierr); 1237660746e0SBarry Smith 1238660746e0SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1239660746e0SBarry Smith if (file) { 1240660746e0SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1241660746e0SBarry Smith } 1242660746e0SBarry Smith PetscFunctionReturn(0); 1243660746e0SBarry Smith } 1244660746e0SBarry Smith 1245660746e0SBarry Smith #undef __FUNCT__ 12464a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1247dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 124857b952d6SSatish Balay { 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 125157b952d6SSatish Balay 1252d64ed03dSBarry Smith PetscFunctionBegin; 1253251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1254251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1255251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1256251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1257660746e0SBarry Smith if (iascii || isdraw || issocket) { 12587b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1259660746e0SBarry Smith } else if (isbinary) { 1260660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 126157b952d6SSatish Balay } 12623a40ed3dSBarry Smith PetscFunctionReturn(0); 126357b952d6SSatish Balay } 126457b952d6SSatish Balay 12654a2ae208SSatish Balay #undef __FUNCT__ 12664a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1267dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 126879bdfe76SSatish Balay { 126979bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1270dfbe8321SBarry Smith PetscErrorCode ierr; 127179bdfe76SSatish Balay 1272d64ed03dSBarry Smith PetscFunctionBegin; 1273aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1274d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 127579bdfe76SSatish Balay #endif 12768798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12778798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12786bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12796bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1280aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 12816bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 128248e59246SSatish Balay #else 128305b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 128448e59246SSatish Balay #endif 128505b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12866bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12876bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1288fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 128905b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1290fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1291899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1292bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1293901853e0SKris Buschelman 1294dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1295bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1296bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1297bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 1298bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1299bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1300bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1301bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1302bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1303bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 13043a40ed3dSBarry Smith PetscFunctionReturn(0); 130579bdfe76SSatish Balay } 130679bdfe76SSatish Balay 13074a2ae208SSatish Balay #undef __FUNCT__ 13084a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1309dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1310cee3aa6bSSatish Balay { 1311cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1312dfbe8321SBarry Smith PetscErrorCode ierr; 1313b24ad042SBarry Smith PetscInt nt; 1314cee3aa6bSSatish Balay 1315d64ed03dSBarry Smith PetscFunctionBegin; 1316e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1317e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1318e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1319e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1320ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1321f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1322ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1323f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 13243a40ed3dSBarry Smith PetscFunctionReturn(0); 1325cee3aa6bSSatish Balay } 1326cee3aa6bSSatish Balay 13274a2ae208SSatish Balay #undef __FUNCT__ 13284a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1329dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1330cee3aa6bSSatish Balay { 1331cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1332dfbe8321SBarry Smith PetscErrorCode ierr; 1333d64ed03dSBarry Smith 1334d64ed03dSBarry Smith PetscFunctionBegin; 1335ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1336f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1337ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1338f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13393a40ed3dSBarry Smith PetscFunctionReturn(0); 1340cee3aa6bSSatish Balay } 1341cee3aa6bSSatish Balay 13424a2ae208SSatish Balay #undef __FUNCT__ 13434a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1344dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1345cee3aa6bSSatish Balay { 1346cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1347dfbe8321SBarry Smith PetscErrorCode ierr; 1348ace3abfcSBarry Smith PetscBool merged; 1349cee3aa6bSSatish Balay 1350d64ed03dSBarry Smith PetscFunctionBegin; 1351a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1352cee3aa6bSSatish Balay /* do nondiagonal part */ 13537c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1354a5ff213dSBarry Smith if (!merged) { 1355cee3aa6bSSatish Balay /* send it on its way */ 1356ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1357cee3aa6bSSatish Balay /* do local part */ 13587c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1359cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1360a5ff213dSBarry Smith /* inserted in yy until the next line */ 1361ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1362a5ff213dSBarry Smith } else { 1363a5ff213dSBarry Smith /* do local part */ 1364a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1365a5ff213dSBarry Smith /* send it on its way */ 1366ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1367a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1368ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1369a5ff213dSBarry Smith } 13703a40ed3dSBarry Smith PetscFunctionReturn(0); 1371cee3aa6bSSatish Balay } 1372cee3aa6bSSatish Balay 13734a2ae208SSatish Balay #undef __FUNCT__ 13744a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1375dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1376cee3aa6bSSatish Balay { 1377cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1378dfbe8321SBarry Smith PetscErrorCode ierr; 1379cee3aa6bSSatish Balay 1380d64ed03dSBarry Smith PetscFunctionBegin; 1381cee3aa6bSSatish Balay /* do nondiagonal part */ 13827c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1383cee3aa6bSSatish Balay /* send it on its way */ 1384ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1385cee3aa6bSSatish Balay /* do local part */ 13867c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1387cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1388cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1389cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1390ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 13913a40ed3dSBarry Smith PetscFunctionReturn(0); 1392cee3aa6bSSatish Balay } 1393cee3aa6bSSatish Balay 1394cee3aa6bSSatish Balay /* 1395cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1396cee3aa6bSSatish Balay diagonal block 1397cee3aa6bSSatish Balay */ 13984a2ae208SSatish Balay #undef __FUNCT__ 13994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1400dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1401cee3aa6bSSatish Balay { 1402cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1403dfbe8321SBarry Smith PetscErrorCode ierr; 1404d64ed03dSBarry Smith 1405d64ed03dSBarry Smith PetscFunctionBegin; 1406e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 14073a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 14083a40ed3dSBarry Smith PetscFunctionReturn(0); 1409cee3aa6bSSatish Balay } 1410cee3aa6bSSatish Balay 14114a2ae208SSatish Balay #undef __FUNCT__ 14124a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1413f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1414cee3aa6bSSatish Balay { 1415cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1416dfbe8321SBarry Smith PetscErrorCode ierr; 1417d64ed03dSBarry Smith 1418d64ed03dSBarry Smith PetscFunctionBegin; 1419f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1420f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 14213a40ed3dSBarry Smith PetscFunctionReturn(0); 1422cee3aa6bSSatish Balay } 1423026e39d0SSatish Balay 14244a2ae208SSatish Balay #undef __FUNCT__ 14254a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1426b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1427acdf5bf4SSatish Balay { 1428acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 142987828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 14306849ba73SBarry Smith PetscErrorCode ierr; 1431d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1432d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1433899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1434acdf5bf4SSatish Balay 1435d64ed03dSBarry Smith PetscFunctionBegin; 1436e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1437e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1438acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1439acdf5bf4SSatish Balay 1440acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1441acdf5bf4SSatish Balay /* 1442acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1443acdf5bf4SSatish Balay */ 1444acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1445b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1446bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1447acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 144826fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1449acdf5bf4SSatish Balay } 1450*dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1451acdf5bf4SSatish Balay } 1452d9d09a02SSatish Balay lrow = row - brstart; 1453acdf5bf4SSatish Balay 1454acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1455acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1456acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1457f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1458f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1459acdf5bf4SSatish Balay nztot = nzA + nzB; 1460acdf5bf4SSatish Balay 1461acdf5bf4SSatish Balay cmap = mat->garray; 1462acdf5bf4SSatish Balay if (v || idx) { 1463acdf5bf4SSatish Balay if (nztot) { 1464acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1465b24ad042SBarry Smith PetscInt imark = -1; 1466acdf5bf4SSatish Balay if (v) { 1467acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1468acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1469d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1470acdf5bf4SSatish Balay else break; 1471acdf5bf4SSatish Balay } 1472acdf5bf4SSatish Balay imark = i; 1473acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1474acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1475acdf5bf4SSatish Balay } 1476acdf5bf4SSatish Balay if (idx) { 1477acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1478acdf5bf4SSatish Balay if (imark > -1) { 1479acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1480bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1481acdf5bf4SSatish Balay } 1482acdf5bf4SSatish Balay } else { 1483acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 148426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1485acdf5bf4SSatish Balay else break; 1486acdf5bf4SSatish Balay } 1487acdf5bf4SSatish Balay imark = i; 1488acdf5bf4SSatish Balay } 1489d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1490d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1491acdf5bf4SSatish Balay } 1492d64ed03dSBarry Smith } else { 1493d212a18eSSatish Balay if (idx) *idx = 0; 1494d212a18eSSatish Balay if (v) *v = 0; 1495d212a18eSSatish Balay } 1496acdf5bf4SSatish Balay } 1497acdf5bf4SSatish Balay *nz = nztot; 1498f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1499f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 15003a40ed3dSBarry Smith PetscFunctionReturn(0); 1501acdf5bf4SSatish Balay } 1502acdf5bf4SSatish Balay 15034a2ae208SSatish Balay #undef __FUNCT__ 15044a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1505b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1506acdf5bf4SSatish Balay { 1507acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1508d64ed03dSBarry Smith 1509d64ed03dSBarry Smith PetscFunctionBegin; 1510e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1511acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 15123a40ed3dSBarry Smith PetscFunctionReturn(0); 1513acdf5bf4SSatish Balay } 1514acdf5bf4SSatish Balay 15154a2ae208SSatish Balay #undef __FUNCT__ 15164a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1517dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 151858667388SSatish Balay { 151958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1520dfbe8321SBarry Smith PetscErrorCode ierr; 1521d64ed03dSBarry Smith 1522d64ed03dSBarry Smith PetscFunctionBegin; 152358667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 152458667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 15253a40ed3dSBarry Smith PetscFunctionReturn(0); 152658667388SSatish Balay } 15270ac07820SSatish Balay 15284a2ae208SSatish Balay #undef __FUNCT__ 15294a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1530dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 15310ac07820SSatish Balay { 15324e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 15334e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1534dfbe8321SBarry Smith PetscErrorCode ierr; 1535329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15360ac07820SSatish Balay 1537d64ed03dSBarry Smith PetscFunctionBegin; 1538d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 153926fbe8dcSKarl Rupp 15404e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 154126fbe8dcSKarl Rupp 15420e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1543de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 154426fbe8dcSKarl Rupp 15454e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 154626fbe8dcSKarl Rupp 15470e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1548de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 154926fbe8dcSKarl Rupp 15500ac07820SSatish Balay if (flag == MAT_LOCAL) { 15514e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15524e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15534e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15544e220ebcSLois Curfman McInnes info->memory = isend[3]; 15554e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15560ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1557ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 155826fbe8dcSKarl Rupp 15594e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15604e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15614e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15624e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15634e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15640ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1565ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 156626fbe8dcSKarl Rupp 15674e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15684e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15694e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15704e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15714e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1572ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15734e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15744e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15754e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15763a40ed3dSBarry Smith PetscFunctionReturn(0); 15770ac07820SSatish Balay } 15780ac07820SSatish Balay 15794a2ae208SSatish Balay #undef __FUNCT__ 15804a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1581ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 158258667388SSatish Balay { 158358667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1584dfbe8321SBarry Smith PetscErrorCode ierr; 158558667388SSatish Balay 1586d64ed03dSBarry Smith PetscFunctionBegin; 158712c028f9SKris Buschelman switch (op) { 1588512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 158912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 159028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1591a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 159212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 15934e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15944e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 159512c028f9SKris Buschelman break; 159612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15974e0d8c25SBarry Smith a->roworiented = flg; 159826fbe8dcSKarl Rupp 15994e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16004e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 160112c028f9SKris Buschelman break; 16024e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1603290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 160412c028f9SKris Buschelman break; 160512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16064e0d8c25SBarry Smith a->donotstash = flg; 160712c028f9SKris Buschelman break; 160812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 16094e0d8c25SBarry Smith a->ht_flag = flg; 161012c028f9SKris Buschelman break; 161177e54ba9SKris Buschelman case MAT_SYMMETRIC: 161277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16132188ac68SBarry Smith case MAT_HERMITIAN: 16142188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 16154e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 161677e54ba9SKris Buschelman break; 161712c028f9SKris Buschelman default: 1618ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1619d64ed03dSBarry Smith } 16203a40ed3dSBarry Smith PetscFunctionReturn(0); 162158667388SSatish Balay } 162258667388SSatish Balay 16234a2ae208SSatish Balay #undef __FUNCT__ 16246a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ" 1625fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 16260ac07820SSatish Balay { 16270ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16280ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16290ac07820SSatish Balay Mat B; 1630dfbe8321SBarry Smith PetscErrorCode ierr; 1631d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1632d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 16333eda8832SBarry Smith MatScalar *a; 16340ac07820SSatish Balay 1635d64ed03dSBarry Smith PetscFunctionBegin; 1636ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1637fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 1638ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1639d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 16407adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 16412e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 16420298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1643fc4dec0aSBarry Smith } else { 1644fc4dec0aSBarry Smith B = *matout; 1645fc4dec0aSBarry Smith } 16460ac07820SSatish Balay 16470ac07820SSatish Balay /* copy over the A part */ 16480ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16490ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1650b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16510ac07820SSatish Balay 16520ac07820SSatish Balay for (i=0; i<mbs; i++) { 1653899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 165426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 16550ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1656899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16570ac07820SSatish Balay for (k=0; k<bs; k++) { 165897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 165926fbe8dcSKarl Rupp 16600ac07820SSatish Balay col++; a += bs; 16610ac07820SSatish Balay } 16620ac07820SSatish Balay } 16630ac07820SSatish Balay } 16640ac07820SSatish Balay /* copy over the B part */ 16650ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16660ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16670ac07820SSatish Balay for (i=0; i<mbs; i++) { 1668899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 166926fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 16700ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16710ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16720ac07820SSatish Balay for (k=0; k<bs; k++) { 167397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 167426fbe8dcSKarl Rupp col++; 167526fbe8dcSKarl Rupp a += bs; 16760ac07820SSatish Balay } 16770ac07820SSatish Balay } 16780ac07820SSatish Balay } 1679606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16800ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16810ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16820ac07820SSatish Balay 168326fbe8dcSKarl Rupp if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B; 168426fbe8dcSKarl Rupp else { 1685eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 16860ac07820SSatish Balay } 16873a40ed3dSBarry Smith PetscFunctionReturn(0); 16880ac07820SSatish Balay } 16890e95ebc0SSatish Balay 16904a2ae208SSatish Balay #undef __FUNCT__ 16914a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1692dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16930e95ebc0SSatish Balay { 169436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 169536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1696dfbe8321SBarry Smith PetscErrorCode ierr; 1697b24ad042SBarry Smith PetscInt s1,s2,s3; 16980e95ebc0SSatish Balay 1699d64ed03dSBarry Smith PetscFunctionBegin; 170036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 170136c4a09eSSatish Balay if (rr) { 170236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1703e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 170436c4a09eSSatish Balay /* Overlap communication with computation. */ 1705ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 170636c4a09eSSatish Balay } 17070e95ebc0SSatish Balay if (ll) { 17080e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1709e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 17100298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17110e95ebc0SSatish Balay } 171236c4a09eSSatish Balay /* scale the diagonal block */ 171336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 171436c4a09eSSatish Balay 171536c4a09eSSatish Balay if (rr) { 171636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1717ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17180298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 171936c4a09eSSatish Balay } 17203a40ed3dSBarry Smith PetscFunctionReturn(0); 17210e95ebc0SSatish Balay } 17220e95ebc0SSatish Balay 17234a2ae208SSatish Balay #undef __FUNCT__ 17244a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 17252b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 17260ac07820SSatish Balay { 17270ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 172865a92638SMatthew G. Knepley PetscInt *owners = A->rmap->range; 172965a92638SMatthew G. Knepley PetscInt n = A->rmap->n; 173065a92638SMatthew G. Knepley PetscMPIInt size = l->size; 173165a92638SMatthew G. Knepley PetscSF sf; 173265a92638SMatthew G. Knepley PetscInt *lrows; 173365a92638SMatthew G. Knepley PetscSFNode *rrows; 173465a92638SMatthew G. Knepley PetscInt lastidx = -1, r, p = 0, len = 0; 17356849ba73SBarry Smith PetscErrorCode ierr; 17360ac07820SSatish Balay 1737d64ed03dSBarry Smith PetscFunctionBegin; 173865a92638SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 173965a92638SMatthew G. Knepley ierr = PetscMalloc(n * sizeof(PetscInt), &lrows);CHKERRQ(ierr); 174065a92638SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 174165a92638SMatthew G. Knepley ierr = PetscMalloc(N * sizeof(PetscSFNode), &rrows);CHKERRQ(ierr); 174265a92638SMatthew G. Knepley for (r = 0; r < N; ++r) { 174365a92638SMatthew G. Knepley const PetscInt idx = rows[r]; 174465a92638SMatthew G. Knepley PetscBool found = PETSC_FALSE; 174565a92638SMatthew G. Knepley /* Trick for efficient searching for sorted rows */ 174665a92638SMatthew G. Knepley if (lastidx > idx) p = 0; 17476543fbbaSBarry Smith lastidx = idx; 174865a92638SMatthew G. Knepley for (; p < size; ++p) { 174965a92638SMatthew G. Knepley if (idx >= owners[p] && idx < owners[p+1]) { 175065a92638SMatthew G. Knepley rrows[r].rank = p; 175165a92638SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 17526543fbbaSBarry Smith found = PETSC_TRUE; 17536543fbbaSBarry Smith break; 17540ac07820SSatish Balay } 17550ac07820SSatish Balay } 175665a92638SMatthew G. Knepley if (!found) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %d not found in matrix distribution", idx); 17570ac07820SSatish Balay } 175865a92638SMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 175965a92638SMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 176065a92638SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 176165a92638SMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 176265a92638SMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 176365a92638SMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 176465a92638SMatthew G. Knepley /* Compress and put in row numbers */ 176565a92638SMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 176697b48c8fSBarry Smith /* fix right hand side if needed */ 176797b48c8fSBarry Smith if (x && b) { 176865a92638SMatthew G. Knepley const PetscScalar *xx; 176965a92638SMatthew G. Knepley PetscScalar *bb; 177065a92638SMatthew G. Knepley 177197b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 177297b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 177365a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 177497b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 177597b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 177697b48c8fSBarry Smith } 177797b48c8fSBarry Smith 17780ac07820SSatish Balay /* actually zap the local rows */ 177972dacd9aSBarry Smith /* 178072dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1781a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 178272dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 178372dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 178472dacd9aSBarry Smith 178572dacd9aSBarry Smith */ 17869c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 178765a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,0,0);CHKERRQ(ierr); 1788d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 178965a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,0,0);CHKERRQ(ierr); 1790f4df32b1SMatthew Knepley } else if (diag != 0.0) { 179165a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1792e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1793512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 179465a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 179565a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1796f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1797a07cd24cSSatish Balay } 1798a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1799a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18009c957beeSSatish Balay } else { 180165a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1802a07cd24cSSatish Balay } 1803606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 18043a40ed3dSBarry Smith PetscFunctionReturn(0); 18050ac07820SSatish Balay } 180672dacd9aSBarry Smith 18074a2ae208SSatish Balay #undef __FUNCT__ 18084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1809dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1810bb5a7306SBarry Smith { 1811bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1812dfbe8321SBarry Smith PetscErrorCode ierr; 1813d64ed03dSBarry Smith 1814d64ed03dSBarry Smith PetscFunctionBegin; 1815bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18163a40ed3dSBarry Smith PetscFunctionReturn(0); 1817bb5a7306SBarry Smith } 1818bb5a7306SBarry Smith 18196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 18200ac07820SSatish Balay 18214a2ae208SSatish Balay #undef __FUNCT__ 18224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1823ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 18247fc3c18eSBarry Smith { 18257fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18267fc3c18eSBarry Smith Mat a,b,c,d; 1827ace3abfcSBarry Smith PetscBool flg; 1828dfbe8321SBarry Smith PetscErrorCode ierr; 18297fc3c18eSBarry Smith 18307fc3c18eSBarry Smith PetscFunctionBegin; 18317fc3c18eSBarry Smith a = matA->A; b = matA->B; 18327fc3c18eSBarry Smith c = matB->A; d = matB->B; 18337fc3c18eSBarry Smith 18347fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1835abc0a331SBarry Smith if (flg) { 18367fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18377fc3c18eSBarry Smith } 1838ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 18397fc3c18eSBarry Smith PetscFunctionReturn(0); 18407fc3c18eSBarry Smith } 18417fc3c18eSBarry Smith 18423c896bc6SHong Zhang #undef __FUNCT__ 18433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 18443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 18453c896bc6SHong Zhang { 18463c896bc6SHong Zhang PetscErrorCode ierr; 18473c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 18483c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 18493c896bc6SHong Zhang 18503c896bc6SHong Zhang PetscFunctionBegin; 18513c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18523c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18533c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 18543c896bc6SHong Zhang } else { 18553c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18563c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18573c896bc6SHong Zhang } 18583c896bc6SHong Zhang PetscFunctionReturn(0); 18593c896bc6SHong Zhang } 1860273d9f13SBarry Smith 18614a2ae208SSatish Balay #undef __FUNCT__ 18624994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ" 18634994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1864273d9f13SBarry Smith { 1865dfbe8321SBarry Smith PetscErrorCode ierr; 1866273d9f13SBarry Smith 1867273d9f13SBarry Smith PetscFunctionBegin; 1868535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1869273d9f13SBarry Smith PetscFunctionReturn(0); 1870273d9f13SBarry Smith } 1871273d9f13SBarry Smith 18724fe895cdSHong Zhang #undef __FUNCT__ 18734fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 18744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18754fe895cdSHong Zhang { 18764fe895cdSHong Zhang PetscErrorCode ierr; 18774fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 18784fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18794fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 18804fe895cdSHong Zhang 18814fe895cdSHong Zhang PetscFunctionBegin; 18824fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18834fe895cdSHong Zhang PetscScalar alpha = a; 18844fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 18854fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 1886c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 18878b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18884fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 18894fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 1890c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 18918b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18924fe895cdSHong Zhang } else { 18934fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 18944fe895cdSHong Zhang } 18954fe895cdSHong Zhang PetscFunctionReturn(0); 18964fe895cdSHong Zhang } 18974fe895cdSHong Zhang 189899cafbc1SBarry Smith #undef __FUNCT__ 189999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 190099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 190199cafbc1SBarry Smith { 190299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 190399cafbc1SBarry Smith PetscErrorCode ierr; 190499cafbc1SBarry Smith 190599cafbc1SBarry Smith PetscFunctionBegin; 190699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 190799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 190899cafbc1SBarry Smith PetscFunctionReturn(0); 190999cafbc1SBarry Smith } 191099cafbc1SBarry Smith 191199cafbc1SBarry Smith #undef __FUNCT__ 191299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 191399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 191499cafbc1SBarry Smith { 191599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 191699cafbc1SBarry Smith PetscErrorCode ierr; 191799cafbc1SBarry Smith 191899cafbc1SBarry Smith PetscFunctionBegin; 191999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 192099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 192199cafbc1SBarry Smith PetscFunctionReturn(0); 192299cafbc1SBarry Smith } 192399cafbc1SBarry Smith 192482094794SBarry Smith #undef __FUNCT__ 192582094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 19264aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 19274aa3045dSJed Brown { 19284aa3045dSJed Brown PetscErrorCode ierr; 19294aa3045dSJed Brown IS iscol_local; 19304aa3045dSJed Brown PetscInt csize; 19314aa3045dSJed Brown 19324aa3045dSJed Brown PetscFunctionBegin; 19334aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1934b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1935b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1936e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1937b79d0421SJed Brown } else { 19384aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1939b79d0421SJed Brown } 19404aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1941b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1942b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 19436bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 1944b79d0421SJed Brown } 19454aa3045dSJed Brown PetscFunctionReturn(0); 19464aa3045dSJed Brown } 194729dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*); 19484aa3045dSJed Brown #undef __FUNCT__ 1949dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private" 195082094794SBarry Smith /* 195182094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 195282094794SBarry Smith in local and then by concatenating the local matrices the end result. 195382094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 195482094794SBarry Smith */ 19554aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 195682094794SBarry Smith { 195782094794SBarry Smith PetscErrorCode ierr; 195882094794SBarry Smith PetscMPIInt rank,size; 195982094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 196029dcf524SDmitry Karpeev PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow; 196129dcf524SDmitry Karpeev Mat M,Mreuse; 196282094794SBarry Smith MatScalar *vwork,*aa; 1963ce94432eSBarry Smith MPI_Comm comm; 196429dcf524SDmitry Karpeev IS isrow_new, iscol_new; 196529dcf524SDmitry Karpeev PetscBool idflag,allrows, allcols; 196682094794SBarry Smith Mat_SeqBAIJ *aij; 196782094794SBarry Smith 196882094794SBarry Smith PetscFunctionBegin; 1969ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 197082094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 197182094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 197229dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 197329dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 197429dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 197529dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 197682094794SBarry Smith 197729dcf524SDmitry Karpeev /* Check for special case: each processor gets entire matrix columns */ 197829dcf524SDmitry Karpeev ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr); 197929dcf524SDmitry Karpeev ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr); 198026fbe8dcSKarl Rupp if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE; 198126fbe8dcSKarl Rupp else allcols = PETSC_FALSE; 198229dcf524SDmitry Karpeev 198329dcf524SDmitry Karpeev ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr); 198429dcf524SDmitry Karpeev ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr); 198526fbe8dcSKarl Rupp if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE; 198626fbe8dcSKarl Rupp else allrows = PETSC_FALSE; 198726fbe8dcSKarl Rupp 198882094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 198982094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 1990e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 199175f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 199282094794SBarry Smith } else { 199375f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 199482094794SBarry Smith } 199529dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 199629dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 199782094794SBarry Smith /* 199882094794SBarry Smith m - number of local rows 199982094794SBarry Smith n - number of columns (same on all processors) 200082094794SBarry Smith rstart - first row in new global matrix generated 200182094794SBarry Smith */ 200282094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 200382094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 200482094794SBarry Smith m = m/bs; 200582094794SBarry Smith n = n/bs; 200682094794SBarry Smith 200782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 200882094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 200982094794SBarry Smith ii = aij->i; 201082094794SBarry Smith jj = aij->j; 201182094794SBarry Smith 201282094794SBarry Smith /* 201382094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 201482094794SBarry Smith portions of the matrix in order to do correct preallocation 201582094794SBarry Smith */ 201682094794SBarry Smith 201782094794SBarry Smith /* first get start and end of "diagonal" columns */ 201882094794SBarry Smith if (csize == PETSC_DECIDE) { 201982094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 202082094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 202182094794SBarry Smith nlocal = m; 202282094794SBarry Smith } else { 202382094794SBarry Smith nlocal = n/size + ((n % size) > rank); 202482094794SBarry Smith } 202582094794SBarry Smith } else { 202682094794SBarry Smith nlocal = csize/bs; 202782094794SBarry Smith } 202882094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 202982094794SBarry Smith rstart = rend - nlocal; 203065e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 203182094794SBarry Smith 203282094794SBarry Smith /* next, compute all the lengths */ 2033*dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 203482094794SBarry Smith for (i=0; i<m; i++) { 203582094794SBarry Smith jend = ii[i+1] - ii[i]; 203682094794SBarry Smith olen = 0; 203782094794SBarry Smith dlen = 0; 203882094794SBarry Smith for (j=0; j<jend; j++) { 203982094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 204082094794SBarry Smith else dlen++; 204182094794SBarry Smith jj++; 204282094794SBarry Smith } 204382094794SBarry Smith olens[i] = olen; 204482094794SBarry Smith dlens[i] = dlen; 204582094794SBarry Smith } 204682094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 204782094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 204882094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 204982094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2050eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 205182094794SBarry Smith } else { 205282094794SBarry Smith PetscInt ml,nl; 205382094794SBarry Smith 205482094794SBarry Smith M = *newmat; 205582094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2056e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 205782094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 205882094794SBarry Smith /* 205982094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 206082094794SBarry Smith rather than the slower MatSetValues(). 206182094794SBarry Smith */ 206282094794SBarry Smith M->was_assembled = PETSC_TRUE; 206382094794SBarry Smith M->assembled = PETSC_FALSE; 206482094794SBarry Smith } 206582094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 206682094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 206782094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 206882094794SBarry Smith ii = aij->i; 206982094794SBarry Smith jj = aij->j; 207082094794SBarry Smith aa = aij->a; 207182094794SBarry Smith for (i=0; i<m; i++) { 207282094794SBarry Smith row = rstart/bs + i; 207382094794SBarry Smith nz = ii[i+1] - ii[i]; 207482094794SBarry Smith cwork = jj; jj += nz; 207575f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 207682094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 207782094794SBarry Smith } 207882094794SBarry Smith 207982094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 208082094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 208182094794SBarry Smith *newmat = M; 208282094794SBarry Smith 208382094794SBarry Smith /* save submatrix used in processor for next request */ 208482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 208582094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 208682094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 208782094794SBarry Smith } 208882094794SBarry Smith PetscFunctionReturn(0); 208982094794SBarry Smith } 209082094794SBarry Smith 209182094794SBarry Smith #undef __FUNCT__ 209282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 209382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 209482094794SBarry Smith { 209582094794SBarry Smith MPI_Comm comm,pcomm; 2096a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 209782094794SBarry Smith const PetscInt *rows; 2098dbf0e21dSBarry Smith PetscMPIInt size; 2099a0a83eb5SRémi Lacroix IS crowp,lcolp; 210082094794SBarry Smith PetscErrorCode ierr; 210182094794SBarry Smith 210282094794SBarry Smith PetscFunctionBegin; 210382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 210482094794SBarry Smith /* make a collective version of 'rowp' */ 210582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 210682094794SBarry Smith if (pcomm==comm) { 210782094794SBarry Smith crowp = rowp; 210882094794SBarry Smith } else { 210982094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 211082094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 211170b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 211282094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 211382094794SBarry Smith } 2114a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2115a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 211682094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2117dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2118dbf0e21dSBarry Smith if (size==1) { 211982094794SBarry Smith lcolp = colp; 212082094794SBarry Smith } else { 212175f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 212282094794SBarry Smith } 2123dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 212475f6568bSJed Brown /* now we just get the submatrix */ 2125a0a83eb5SRémi Lacroix ierr = MatGetLocalSize(A,PETSC_NULL,&clocal_size);CHKERRQ(ierr); 2126a0a83eb5SRémi Lacroix ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2127a0a83eb5SRémi Lacroix /* clean up */ 2128a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2129a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2130a0a83eb5SRémi Lacroix } 2131dbf0e21dSBarry Smith if (size>1) { 21326bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 213382094794SBarry Smith } 213482094794SBarry Smith PetscFunctionReturn(0); 213582094794SBarry Smith } 213682094794SBarry Smith 21378c7482ecSBarry Smith #undef __FUNCT__ 21388c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 21397087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 21408c7482ecSBarry Smith { 21418c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 21428c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 21438c7482ecSBarry Smith 21448c7482ecSBarry Smith PetscFunctionBegin; 214526fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 214626fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 21478c7482ecSBarry Smith PetscFunctionReturn(0); 21488c7482ecSBarry Smith } 21498c7482ecSBarry Smith 2150f6d58c54SBarry Smith #undef __FUNCT__ 2151d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ" 2152d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2153f6d58c54SBarry Smith { 2154f6d58c54SBarry Smith Mat B; 2155f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2156f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2157f6d58c54SBarry Smith Mat_SeqAIJ *b; 2158f6d58c54SBarry Smith PetscErrorCode ierr; 2159f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2160f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2161f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2162f6d58c54SBarry Smith 2163f6d58c54SBarry Smith PetscFunctionBegin; 2164ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2165ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2166f6d58c54SBarry Smith 2167f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2168f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2169f6d58c54SBarry Smith */ 2170f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2171f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2172f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2173f6d58c54SBarry Smith } 2174f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2175f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2176f6d58c54SBarry Smith displs = recvcounts + size; 2177f6d58c54SBarry Smith for (i=0; i<size; i++) { 2178f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2179f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2180f6d58c54SBarry Smith } 2181f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2182ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2183f6d58c54SBarry Smith #else 2184ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2185f6d58c54SBarry Smith #endif 2186f6d58c54SBarry Smith /* --------------------------------------------------------------- 2187f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2188f6d58c54SBarry Smith */ 2189f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2190f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2191f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2192f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2193f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2194f6d58c54SBarry Smith 2195f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2196f6d58c54SBarry Smith Copy my part of matrix column indices over 2197f6d58c54SBarry Smith */ 2198f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2199f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2200f6d58c54SBarry Smith a_jsendbuf = ad->j; 2201f6d58c54SBarry Smith b_jsendbuf = bd->j; 2202f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2203f6d58c54SBarry Smith cnt = 0; 2204f6d58c54SBarry Smith for (i=0; i<n; i++) { 2205f6d58c54SBarry Smith 2206f6d58c54SBarry Smith /* put in lower diagonal portion */ 2207f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2208f6d58c54SBarry Smith while (m > 0) { 2209f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2210f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2211f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2212f6d58c54SBarry Smith m--; 2213f6d58c54SBarry Smith } 2214f6d58c54SBarry Smith 2215f6d58c54SBarry Smith /* put in diagonal portion */ 2216f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2217f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2218f6d58c54SBarry Smith } 2219f6d58c54SBarry Smith 2220f6d58c54SBarry Smith /* put in upper diagonal portion */ 2221f6d58c54SBarry Smith while (m-- > 0) { 2222f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2223f6d58c54SBarry Smith } 2224f6d58c54SBarry Smith } 2225e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2226f6d58c54SBarry Smith 2227f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2228f6d58c54SBarry Smith Gather all column indices to all processors 2229f6d58c54SBarry Smith */ 2230f6d58c54SBarry Smith for (i=0; i<size; i++) { 2231f6d58c54SBarry Smith recvcounts[i] = 0; 2232f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2233f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2234f6d58c54SBarry Smith } 2235f6d58c54SBarry Smith } 2236f6d58c54SBarry Smith displs[0] = 0; 2237f6d58c54SBarry Smith for (i=1; i<size; i++) { 2238f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2239f6d58c54SBarry Smith } 2240f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2241ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2242f6d58c54SBarry Smith #else 2243ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2244f6d58c54SBarry Smith #endif 2245f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2246f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2247f6d58c54SBarry Smith */ 2248f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2249f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2250f6d58c54SBarry Smith /* set the b->i indices */ 2251f6d58c54SBarry Smith b->i[0] = 0; 2252f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2253f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2254f6d58c54SBarry Smith } 2255f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2256f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2257f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2258f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2259f6d58c54SBarry Smith 2260f6d58c54SBarry Smith if (A->symmetric) { 2261f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2262f6d58c54SBarry Smith } else if (A->hermitian) { 2263f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2264f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2265f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2266f6d58c54SBarry Smith } 2267f6d58c54SBarry Smith *newmat = B; 2268f6d58c54SBarry Smith PetscFunctionReturn(0); 2269f6d58c54SBarry Smith } 2270f6d58c54SBarry Smith 2271b1a666ecSBarry Smith #undef __FUNCT__ 2272b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2273b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2274b1a666ecSBarry Smith { 2275b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2276b1a666ecSBarry Smith PetscErrorCode ierr; 2277b1a666ecSBarry Smith Vec bb1 = 0; 2278b1a666ecSBarry Smith 2279b1a666ecSBarry Smith PetscFunctionBegin; 2280b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2281b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2282b1a666ecSBarry Smith PetscFunctionReturn(0); 2283b1a666ecSBarry Smith } 2284b1a666ecSBarry Smith 22854e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 22864e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 22874e980039SJed Brown } 22884e980039SJed Brown 2289b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2290b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2291b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2292b1a666ecSBarry Smith its--; 2293b1a666ecSBarry Smith } 2294b1a666ecSBarry Smith 2295b1a666ecSBarry Smith while (its--) { 2296b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2297b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2298b1a666ecSBarry Smith 2299b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2300b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2301b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2302b1a666ecSBarry Smith 2303b1a666ecSBarry Smith /* local sweep */ 2304b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2305b1a666ecSBarry Smith } 2306b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2307b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2308b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2309b1a666ecSBarry Smith its--; 2310b1a666ecSBarry Smith } 2311b1a666ecSBarry Smith while (its--) { 2312b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2313b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2314b1a666ecSBarry Smith 2315b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2316b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2317b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2318b1a666ecSBarry Smith 2319b1a666ecSBarry Smith /* local sweep */ 2320b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2321b1a666ecSBarry Smith } 2322b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2323b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2324b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2325b1a666ecSBarry Smith its--; 2326b1a666ecSBarry Smith } 2327b1a666ecSBarry Smith while (its--) { 2328b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2329b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2330b1a666ecSBarry Smith 2331b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2332b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2333b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2334b1a666ecSBarry Smith 2335b1a666ecSBarry Smith /* local sweep */ 2336b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2337b1a666ecSBarry Smith } 2338ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2339b1a666ecSBarry Smith 23406bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2341b1a666ecSBarry Smith PetscFunctionReturn(0); 2342b1a666ecSBarry Smith } 2343b1a666ecSBarry Smith 2344bbead8a2SBarry Smith #undef __FUNCT__ 234547f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ" 234647f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 234747f7623dSRémi Lacroix { 234847f7623dSRémi Lacroix PetscErrorCode ierr; 234947f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 235047f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 235147f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 235247f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 235347f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 235447f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 235547f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 235647f7623dSRémi Lacroix PetscReal *work; 235747f7623dSRémi Lacroix 235847f7623dSRémi Lacroix PetscFunctionBegin; 235947f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 236047f7623dSRémi Lacroix ierr = PetscMalloc(N*sizeof(PetscReal),&work);CHKERRQ(ierr); 236147f7623dSRémi Lacroix ierr = PetscMemzero(work,N*sizeof(PetscReal));CHKERRQ(ierr); 236247f7623dSRémi Lacroix if (type == NORM_2) { 236347f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 236447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 236547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 236647f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 236747f7623dSRémi Lacroix a_val++; 236847f7623dSRémi Lacroix } 236947f7623dSRémi Lacroix } 237047f7623dSRémi Lacroix } 237147f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 237247f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 237347f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 237447f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 237547f7623dSRémi Lacroix b_val++; 237647f7623dSRémi Lacroix } 237747f7623dSRémi Lacroix } 237847f7623dSRémi Lacroix } 237947f7623dSRémi Lacroix } else if (type == NORM_1) { 238047f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 238147f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 238247f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 238347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 238447f7623dSRémi Lacroix a_val++; 238547f7623dSRémi Lacroix } 238647f7623dSRémi Lacroix } 238747f7623dSRémi Lacroix } 238847f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 238947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 239047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 239147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 239247f7623dSRémi Lacroix b_val++; 239347f7623dSRémi Lacroix } 239447f7623dSRémi Lacroix } 239547f7623dSRémi Lacroix } 239647f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 239747f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 239847f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 239947f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 240047f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 240147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 240247f7623dSRémi Lacroix a_val++; 240347f7623dSRémi Lacroix } 240447f7623dSRémi Lacroix } 240547f7623dSRémi Lacroix } 240647f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 240747f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 240847f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 240947f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 241047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 241147f7623dSRémi Lacroix b_val++; 241247f7623dSRémi Lacroix } 241347f7623dSRémi Lacroix } 241447f7623dSRémi Lacroix } 241547f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 241647f7623dSRémi Lacroix if (type == NORM_INFINITY) { 241747f7623dSRémi Lacroix ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 241847f7623dSRémi Lacroix } else { 241947f7623dSRémi Lacroix ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 242047f7623dSRémi Lacroix } 242147f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 242247f7623dSRémi Lacroix if (type == NORM_2) { 242347f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 242447f7623dSRémi Lacroix } 242547f7623dSRémi Lacroix PetscFunctionReturn(0); 242647f7623dSRémi Lacroix } 242747f7623dSRémi Lacroix 242847f7623dSRémi Lacroix #undef __FUNCT__ 2429bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ" 2430713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2431bbead8a2SBarry Smith { 2432bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2433bbead8a2SBarry Smith PetscErrorCode ierr; 2434bbead8a2SBarry Smith 2435bbead8a2SBarry Smith PetscFunctionBegin; 2436bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 2437bbead8a2SBarry Smith PetscFunctionReturn(0); 2438bbead8a2SBarry Smith } 2439bbead8a2SBarry Smith 24408c7482ecSBarry Smith 244179bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24423964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2443cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2444cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2445cc2dc46cSBarry Smith MatMult_MPIBAIJ, 244697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24477c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24487c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2449cc2dc46cSBarry Smith 0, 2450cc2dc46cSBarry Smith 0, 2451cc2dc46cSBarry Smith 0, 245297304618SKris Buschelman /*10*/ 0, 2453cc2dc46cSBarry Smith 0, 2454cc2dc46cSBarry Smith 0, 2455b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2456cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 245797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24587fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2459cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2460cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2461cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 246297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2463cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2464cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2465cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2466d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2467cc2dc46cSBarry Smith 0, 2468cc2dc46cSBarry Smith 0, 2469cc2dc46cSBarry Smith 0, 2470cc2dc46cSBarry Smith 0, 24714994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2472273d9f13SBarry Smith 0, 2473cc2dc46cSBarry Smith 0, 2474cc2dc46cSBarry Smith 0, 2475cc2dc46cSBarry Smith 0, 2476d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2477cc2dc46cSBarry Smith 0, 2478cc2dc46cSBarry Smith 0, 2479cc2dc46cSBarry Smith 0, 2480cc2dc46cSBarry Smith 0, 2481d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2482cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2483cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2484cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24853c896bc6SHong Zhang MatCopy_MPIBAIJ, 2486d519adbfSMatthew Knepley /*44*/ 0, 2487cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2488cc2dc46cSBarry Smith 0, 2489cc2dc46cSBarry Smith 0, 2490cc2dc46cSBarry Smith 0, 2491f73d5cc4SBarry Smith /*49*/ 0, 2492cc2dc46cSBarry Smith 0, 2493cc2dc46cSBarry Smith 0, 2494cc2dc46cSBarry Smith 0, 2495cc2dc46cSBarry Smith 0, 249693dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2497cc2dc46cSBarry Smith 0, 2498cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 249982094794SBarry Smith MatPermute_MPIBAIJ, 2500cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2501d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2502f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2503f14a1c24SBarry Smith MatView_MPIBAIJ, 2504357abbc8SBarry Smith 0, 25057843d17aSBarry Smith 0, 2506d519adbfSMatthew Knepley /*64*/ 0, 25077843d17aSBarry Smith 0, 25087843d17aSBarry Smith 0, 25097843d17aSBarry Smith 0, 25107843d17aSBarry Smith 0, 2511d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 25127843d17aSBarry Smith 0, 251397304618SKris Buschelman 0, 251497304618SKris Buschelman 0, 251597304618SKris Buschelman 0, 2516d519adbfSMatthew Knepley /*74*/ 0, 2517f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 251897304618SKris Buschelman 0, 251997304618SKris Buschelman 0, 252097304618SKris Buschelman 0, 2521d519adbfSMatthew Knepley /*79*/ 0, 252297304618SKris Buschelman 0, 252397304618SKris Buschelman 0, 252497304618SKris Buschelman 0, 25255bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2526d519adbfSMatthew Knepley /*84*/ 0, 2527865e5f61SKris Buschelman 0, 2528865e5f61SKris Buschelman 0, 2529865e5f61SKris Buschelman 0, 2530865e5f61SKris Buschelman 0, 2531d519adbfSMatthew Knepley /*89*/ 0, 2532865e5f61SKris Buschelman 0, 2533865e5f61SKris Buschelman 0, 2534865e5f61SKris Buschelman 0, 2535865e5f61SKris Buschelman 0, 2536d519adbfSMatthew Knepley /*94*/ 0, 2537865e5f61SKris Buschelman 0, 2538865e5f61SKris Buschelman 0, 253999cafbc1SBarry Smith 0, 254099cafbc1SBarry Smith 0, 2541d519adbfSMatthew Knepley /*99*/ 0, 254299cafbc1SBarry Smith 0, 254399cafbc1SBarry Smith 0, 254499cafbc1SBarry Smith 0, 254599cafbc1SBarry Smith 0, 2546d519adbfSMatthew Knepley /*104*/0, 254799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25488c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 25498c7482ecSBarry Smith 0, 25508c7482ecSBarry Smith 0, 2551d519adbfSMatthew Knepley /*109*/0, 25528c7482ecSBarry Smith 0, 25538c7482ecSBarry Smith 0, 25548c7482ecSBarry Smith 0, 25558c7482ecSBarry Smith 0, 2556d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 25578c7482ecSBarry Smith 0, 25584683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 25594683f7a4SShri Abhyankar 0, 25604683f7a4SShri Abhyankar 0, 25614683f7a4SShri Abhyankar /*119*/0, 25624683f7a4SShri Abhyankar 0, 25634683f7a4SShri Abhyankar 0, 2564bbead8a2SBarry Smith 0, 2565e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2566bbead8a2SBarry Smith /*124*/0, 256747f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 25683964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 25693964eb88SJed Brown 0, 25703964eb88SJed Brown 0, 25713964eb88SJed Brown /*129*/ 0, 25723964eb88SJed Brown 0, 25733964eb88SJed Brown 0, 25743964eb88SJed Brown 0, 25753964eb88SJed Brown 0, 25763964eb88SJed Brown /*134*/ 0, 25773964eb88SJed Brown 0, 25783964eb88SJed Brown 0, 25793964eb88SJed Brown 0, 25803964eb88SJed Brown 0, 25813964eb88SJed Brown /*139*/ 0, 2582f9426fe0SMark Adams 0, 25831919a2e2SJed Brown 0, 2584f86b9fbaSHong Zhang MatFDColoringSetUp_MPIXAIJ 25858c7482ecSBarry Smith }; 258679bdfe76SSatish Balay 25874a2ae208SSatish Balay #undef __FUNCT__ 25884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 258911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 25905ef9f2a5SBarry Smith { 25915ef9f2a5SBarry Smith PetscFunctionBegin; 25925ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 25935ef9f2a5SBarry Smith PetscFunctionReturn(0); 25945ef9f2a5SBarry Smith } 259579bdfe76SSatish Balay 25968cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2597d94109b8SHong Zhang 2598aac34f13SBarry Smith #undef __FUNCT__ 2599aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2600cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2601aac34f13SBarry Smith { 2602b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2603b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2604b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2605b8d659d7SLisandro Dalcin PetscScalar *values=0; 2606d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2607aac34f13SBarry Smith PetscErrorCode ierr; 2608aac34f13SBarry Smith 2609aac34f13SBarry Smith PetscFunctionBegin; 261026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 261126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 261226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 261326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2614e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2615d0f46423SBarry Smith m = B->rmap->n/bs; 2616d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2617d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2618d0f46423SBarry Smith cend = B->cmap->rend/bs; 2619b8d659d7SLisandro Dalcin 2620e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2621*dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2622aac34f13SBarry Smith for (i=0; i<m; i++) { 2623cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2624e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2625b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2626cf12db73SBarry Smith JJ = jj + ii[i]; 2627b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2628aac34f13SBarry Smith if (*JJ >= cstart) break; 2629aac34f13SBarry Smith JJ++; 2630aac34f13SBarry Smith } 2631aac34f13SBarry Smith d = 0; 2632b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2633aac34f13SBarry Smith if (*JJ++ >= cend) break; 2634aac34f13SBarry Smith d++; 2635aac34f13SBarry Smith } 2636aac34f13SBarry Smith d_nnz[i] = d; 2637b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2638aac34f13SBarry Smith } 2639aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2640fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2641aac34f13SBarry Smith 2642b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2643b8d659d7SLisandro Dalcin if (!values) { 2644fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2645b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2646b8d659d7SLisandro Dalcin } 2647b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2648b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2649cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2650cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 26513adadaf3SJed Brown if (!roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2652cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2653b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 26543adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26553adadaf3SJed Brown PetscInt j; 26563adadaf3SJed Brown for (j=0; j<ncols; j++) { 26573adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 26583adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 26593adadaf3SJed Brown } 26603adadaf3SJed Brown } 2661aac34f13SBarry Smith } 2662aac34f13SBarry Smith 2663b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2664aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2665aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26667827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2667aac34f13SBarry Smith PetscFunctionReturn(0); 2668aac34f13SBarry Smith } 2669aac34f13SBarry Smith 2670aac34f13SBarry Smith #undef __FUNCT__ 2671aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2672aac34f13SBarry Smith /*@C 2673dfb205c3SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2674aac34f13SBarry Smith (the default parallel PETSc format). 2675aac34f13SBarry Smith 2676aac34f13SBarry Smith Collective on MPI_Comm 2677aac34f13SBarry Smith 2678aac34f13SBarry Smith Input Parameters: 2679aac34f13SBarry Smith + A - the matrix 2680dfb205c3SBarry Smith . bs - the block size 2681aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2682aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2683aac34f13SBarry Smith - v - optional values in the matrix 2684aac34f13SBarry Smith 2685aac34f13SBarry Smith Level: developer 2686aac34f13SBarry Smith 26873adadaf3SJed Brown Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26883adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26893adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26903adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26913adadaf3SJed Brown block column and the second index is over columns within a block. 26923adadaf3SJed Brown 2693aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2694aac34f13SBarry Smith 26953adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2696aac34f13SBarry Smith @*/ 26977087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2698aac34f13SBarry Smith { 26994ac538c5SBarry Smith PetscErrorCode ierr; 2700aac34f13SBarry Smith 2701aac34f13SBarry Smith PetscFunctionBegin; 27026ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 27036ba663aaSJed Brown PetscValidType(B,1); 27046ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 27054ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2706aac34f13SBarry Smith PetscFunctionReturn(0); 2707aac34f13SBarry Smith } 2708aac34f13SBarry Smith 27094a2ae208SSatish Balay #undef __FUNCT__ 2710a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2711b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2712a23d5eceSKris Buschelman { 2713a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2714dfbe8321SBarry Smith PetscErrorCode ierr; 2715535b19f3SBarry Smith PetscInt i; 2716a23d5eceSKris Buschelman 2717a23d5eceSKris Buschelman PetscFunctionBegin; 271826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 271926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 272026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 272126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2722e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2723899cda47SBarry Smith 2724a23d5eceSKris Buschelman if (d_nnz) { 2725d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2726e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2727a23d5eceSKris Buschelman } 2728a23d5eceSKris Buschelman } 2729a23d5eceSKris Buschelman if (o_nnz) { 2730d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2731e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2732a23d5eceSKris Buschelman } 2733a23d5eceSKris Buschelman } 2734a23d5eceSKris Buschelman 2735a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2736a23d5eceSKris Buschelman b->bs2 = bs*bs; 2737d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2738d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2739d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2740d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2741a23d5eceSKris Buschelman 2742a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2743d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2744a23d5eceSKris Buschelman } 2745d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2746d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2747d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2748d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2749a23d5eceSKris Buschelman 2750526dfc15SBarry Smith if (!B->preallocated) { 2751f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2752d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 27539c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 27543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2755f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2756d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 27579c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 27583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2759ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2760526dfc15SBarry Smith } 2761a23d5eceSKris Buschelman 2762526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2763526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2764526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2765a23d5eceSKris Buschelman PetscFunctionReturn(0); 2766a23d5eceSKris Buschelman } 2767a23d5eceSKris Buschelman 27687087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 27697087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 27705bf65638SKris Buschelman 277182094794SBarry Smith #undef __FUNCT__ 277282094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 27738cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 277482094794SBarry Smith { 277582094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 277682094794SBarry Smith PetscErrorCode ierr; 277782094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 277882094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 277982094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 278082094794SBarry Smith 278182094794SBarry Smith PetscFunctionBegin; 278282094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 278382094794SBarry Smith ii[0] = 0; 278482094794SBarry Smith for (i=0; i<M; i++) { 2785e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2786e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 278782094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 27885ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27895ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 27905ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 27915ee9ba1cSJed Brown } 279282094794SBarry Smith } 279382094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 279482094794SBarry Smith cnt = 0; 279582094794SBarry Smith for (i=0; i<M; i++) { 279682094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 279782094794SBarry Smith if (garray[jo[j]] > rstart) break; 279882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279982094794SBarry Smith } 280082094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 28015ee9ba1cSJed Brown if (jd[k] != i) { 280282094794SBarry Smith jj[cnt++] = rstart + jd[k]; 280382094794SBarry Smith } 28045ee9ba1cSJed Brown } 280582094794SBarry Smith for (; j<io[i+1]; j++) { 280682094794SBarry Smith jj[cnt++] = garray[jo[j]]; 280782094794SBarry Smith } 280882094794SBarry Smith } 2809ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 281082094794SBarry Smith PetscFunctionReturn(0); 281182094794SBarry Smith } 281282094794SBarry Smith 2813c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 281462471d69SBarry Smith 28158cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2816b2573a8aSBarry Smith 281762471d69SBarry Smith #undef __FUNCT__ 281862471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ" 28198cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 282062471d69SBarry Smith { 282162471d69SBarry Smith PetscErrorCode ierr; 282262471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 282362471d69SBarry Smith Mat B; 282485a69837SSatish Balay Mat_MPIAIJ *b; 282562471d69SBarry Smith 282662471d69SBarry Smith PetscFunctionBegin; 2827ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 282862471d69SBarry Smith 2829ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 283062471d69SBarry Smith ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 28316d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 28320298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 28330298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 283462471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 283562471d69SBarry Smith 28366bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 28376bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2838ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 283962471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 284062471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 284162471d69SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 284262471d69SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28436a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28446a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 284562471d69SBarry Smith if (reuse == MAT_REUSE_MATRIX) { 284662471d69SBarry Smith ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); 284762471d69SBarry Smith } else { 284862471d69SBarry Smith *newmat = B; 284962471d69SBarry Smith } 285062471d69SBarry Smith PetscFunctionReturn(0); 285162471d69SBarry Smith } 285262471d69SBarry Smith 2853450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 28548cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 2855450b117fSShri Abhyankar #endif 2856450b117fSShri Abhyankar 28570bad9183SKris Buschelman /*MC 2858fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28590bad9183SKris Buschelman 28600bad9183SKris Buschelman Options Database Keys: 28618c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28628c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28638c07d4e3SBarry Smith - -mat_use_hash_table <fact> 28640bad9183SKris Buschelman 28650bad9183SKris Buschelman Level: beginner 28660bad9183SKris Buschelman 28670bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 28680bad9183SKris Buschelman M*/ 28690bad9183SKris Buschelman 28708cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2871c0cdd4a1SDahai Guo 2872a23d5eceSKris Buschelman #undef __FUNCT__ 28734a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 28748cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2875273d9f13SBarry Smith { 2876273d9f13SBarry Smith Mat_MPIBAIJ *b; 2877dfbe8321SBarry Smith PetscErrorCode ierr; 2878ace3abfcSBarry Smith PetscBool flg; 2879273d9f13SBarry Smith 2880273d9f13SBarry Smith PetscFunctionBegin; 288138f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 288282502324SSatish Balay B->data = (void*)b; 288382502324SSatish Balay 2884273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2885273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2886273d9f13SBarry Smith 2887273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2888ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2889ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith /* build local table of row and column ownerships */ 2892899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2893273d9f13SBarry Smith 2894273d9f13SBarry Smith /* build cache for off array entries formed */ 2895ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 289626fbe8dcSKarl Rupp 2897273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28980298fd71SBarry Smith b->colmap = NULL; 28990298fd71SBarry Smith b->garray = NULL; 2900273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2901273d9f13SBarry Smith 2902273d9f13SBarry Smith /* stuff used in block assembly */ 2903273d9f13SBarry Smith b->barray = 0; 2904273d9f13SBarry Smith 2905273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2906273d9f13SBarry Smith b->lvec = 0; 2907273d9f13SBarry Smith b->Mvctx = 0; 2908273d9f13SBarry Smith 2909273d9f13SBarry Smith /* stuff for MatGetRow() */ 2910273d9f13SBarry Smith b->rowindices = 0; 2911273d9f13SBarry Smith b->rowvalues = 0; 2912273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2913273d9f13SBarry Smith 2914273d9f13SBarry Smith /* hash table stuff */ 2915273d9f13SBarry Smith b->ht = 0; 2916273d9f13SBarry Smith b->hd = 0; 2917273d9f13SBarry Smith b->ht_size = 0; 2918273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2919273d9f13SBarry Smith b->ht_fact = 0; 2920273d9f13SBarry Smith b->ht_total_ct = 0; 2921273d9f13SBarry Smith b->ht_insert_ct = 0; 2922273d9f13SBarry Smith 29237a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 29247a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29257a868f3eSHong Zhang 2926ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29270298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 2928273d9f13SBarry Smith if (flg) { 2929f6275e2eSBarry Smith PetscReal fact = 1.39; 29304e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29310298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 2932273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2933273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 29341e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2935273d9f13SBarry Smith } 29368c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 29378c07d4e3SBarry Smith 2938450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 2939bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_baij_mumps);CHKERRQ(ierr); 2940450b117fSShri Abhyankar #endif 2941bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2942bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 2943bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 2944bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2945bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2946bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2947bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2948bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 2949bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 2950bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2951bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr); 295217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 2953273d9f13SBarry Smith PetscFunctionReturn(0); 2954273d9f13SBarry Smith } 2955273d9f13SBarry Smith 2956209238afSKris Buschelman /*MC 2957002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2958209238afSKris Buschelman 2959209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2960209238afSKris Buschelman and MATMPIBAIJ otherwise. 2961209238afSKris Buschelman 2962209238afSKris Buschelman Options Database Keys: 2963209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2964209238afSKris Buschelman 2965209238afSKris Buschelman Level: beginner 2966209238afSKris Buschelman 296769b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2968209238afSKris Buschelman M*/ 2969209238afSKris Buschelman 29704a2ae208SSatish Balay #undef __FUNCT__ 29714a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2972273d9f13SBarry Smith /*@C 2973aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2974273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2975273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2976273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2977273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2978273d9f13SBarry Smith 2979273d9f13SBarry Smith Collective on Mat 2980273d9f13SBarry Smith 2981273d9f13SBarry Smith Input Parameters: 2982273d9f13SBarry Smith + A - the matrix 2983e8271787SHong Zhang . bs - size of block 2984273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2985273d9f13SBarry Smith submatrix (same for all local rows) 2986273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2987273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29880298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 298995742e49SBarry Smith set it even if it is zero. 2990273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2991273d9f13SBarry Smith submatrix (same for all local rows). 2992273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2993273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 29940298fd71SBarry Smith each block row) or NULL. 2995273d9f13SBarry Smith 299649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2997273d9f13SBarry Smith 2998273d9f13SBarry Smith Options Database Keys: 29998c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30008c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3001273d9f13SBarry Smith 3002273d9f13SBarry Smith Notes: 3003273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3004273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3005273d9f13SBarry Smith 3006273d9f13SBarry Smith Storage Information: 3007273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3008273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3009273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3010273d9f13SBarry Smith local matrix (a rectangular submatrix). 3011273d9f13SBarry Smith 3012273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3013273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 30140298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3015273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3016273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3017273d9f13SBarry Smith 3018273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3019273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3020273d9f13SBarry Smith 3021273d9f13SBarry Smith .vb 3022273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3023a4b1a0f6SJed Brown -------------------------- 3024273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3025273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3026273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3027a4b1a0f6SJed Brown -------------------------- 3028273d9f13SBarry Smith .ve 3029273d9f13SBarry Smith 3030273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3031273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3032273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3033273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3034273d9f13SBarry Smith 3035273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3036273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3037273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3038273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3039273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3040273d9f13SBarry Smith matrices. 3041273d9f13SBarry Smith 3042aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3043aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3044aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3045aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3046aa95bbe8SBarry Smith 3047273d9f13SBarry Smith Level: intermediate 3048273d9f13SBarry Smith 3049273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3050273d9f13SBarry Smith 3051ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3052273d9f13SBarry Smith @*/ 30537087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3054273d9f13SBarry Smith { 30554ac538c5SBarry Smith PetscErrorCode ierr; 3056273d9f13SBarry Smith 3057273d9f13SBarry Smith PetscFunctionBegin; 30586ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30596ba663aaSJed Brown PetscValidType(B,1); 30606ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 30614ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3062273d9f13SBarry Smith PetscFunctionReturn(0); 3063273d9f13SBarry Smith } 3064273d9f13SBarry Smith 30654a2ae208SSatish Balay #undef __FUNCT__ 306669b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ" 306779bdfe76SSatish Balay /*@C 306869b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 306979bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 307079bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 307179bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 307279bdfe76SSatish Balay performance can be increased by more than a factor of 50. 307379bdfe76SSatish Balay 3074db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3075db81eaa0SLois Curfman McInnes 307679bdfe76SSatish Balay Input Parameters: 3077db81eaa0SLois Curfman McInnes + comm - MPI communicator 307879bdfe76SSatish Balay . bs - size of blockk 307979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 308092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 308292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 308392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3085be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3086be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 308747a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 308879bdfe76SSatish Balay submatrix (same for all local rows) 308947a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 309092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30910298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 309295742e49SBarry Smith and set it even if it is zero. 309347a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 309479bdfe76SSatish Balay submatrix (same for all local rows). 309547a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 309692e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30970298fd71SBarry Smith each block row) or NULL. 309879bdfe76SSatish Balay 309979bdfe76SSatish Balay Output Parameter: 310079bdfe76SSatish Balay . A - the matrix 310179bdfe76SSatish Balay 3102db81eaa0SLois Curfman McInnes Options Database Keys: 31038c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31048c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31053ffaccefSLois Curfman McInnes 3106175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3107ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3108175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3109175b88e8SBarry Smith 3110b259b22eSLois Curfman McInnes Notes: 311149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 311249a6f317SBarry Smith 311347a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 311447a75d0bSBarry Smith 311579bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 311679bdfe76SSatish Balay (possibly both). 311779bdfe76SSatish Balay 3118be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3119be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3120be79a94dSBarry Smith 312179bdfe76SSatish Balay Storage Information: 312279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 312379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 312479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 312579bdfe76SSatish Balay local matrix (a rectangular submatrix). 312679bdfe76SSatish Balay 312779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 312879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31290298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 313079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 313179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 313279bdfe76SSatish Balay 313379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 313479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 313579bdfe76SSatish Balay 3136db81eaa0SLois Curfman McInnes .vb 3137db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3138a4b1a0f6SJed Brown -------------------------- 3139db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3140db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3141db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3142a4b1a0f6SJed Brown -------------------------- 3143db81eaa0SLois Curfman McInnes .ve 314479bdfe76SSatish Balay 314579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 314679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 314779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 314857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 314979bdfe76SSatish Balay 3150d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3151d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 315279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 315392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 315492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31556da5968aSLois Curfman McInnes matrices. 315679bdfe76SSatish Balay 3157027ccd11SLois Curfman McInnes Level: intermediate 3158027ccd11SLois Curfman McInnes 315992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 316079bdfe76SSatish Balay 316169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 316279bdfe76SSatish Balay @*/ 316369b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 316479bdfe76SSatish Balay { 31656849ba73SBarry Smith PetscErrorCode ierr; 3166b24ad042SBarry Smith PetscMPIInt size; 316779bdfe76SSatish Balay 3168d64ed03dSBarry Smith PetscFunctionBegin; 3169f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3170f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3171d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3172273d9f13SBarry Smith if (size > 1) { 3173273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3174273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3175273d9f13SBarry Smith } else { 3176273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3177273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 31783914022bSBarry Smith } 31793a40ed3dSBarry Smith PetscFunctionReturn(0); 318079bdfe76SSatish Balay } 3181026e39d0SSatish Balay 31824a2ae208SSatish Balay #undef __FUNCT__ 31834a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 31846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31850ac07820SSatish Balay { 31860ac07820SSatish Balay Mat mat; 31870ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3188dfbe8321SBarry Smith PetscErrorCode ierr; 3189b24ad042SBarry Smith PetscInt len=0; 31900ac07820SSatish Balay 3191d64ed03dSBarry Smith PetscFunctionBegin; 31920ac07820SSatish Balay *newmat = 0; 3193ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3194d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 31957adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 31961d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 31977fff6886SHong Zhang 3198d5f3da31SBarry Smith mat->factortype = matin->factortype; 3199273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32000ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32017fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32027fff6886SHong Zhang 3203273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3204d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32050ac07820SSatish Balay a->bs2 = oldmat->bs2; 32060ac07820SSatish Balay a->mbs = oldmat->mbs; 32070ac07820SSatish Balay a->nbs = oldmat->nbs; 32080ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32090ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32100ac07820SSatish Balay 32111e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 32121e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3213899cda47SBarry Smith 32140ac07820SSatish Balay a->size = oldmat->size; 32150ac07820SSatish Balay a->rank = oldmat->rank; 3216aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3217aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3218aef5e8e0SSatish Balay a->rowindices = 0; 32190ac07820SSatish Balay a->rowvalues = 0; 32200ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 322130793edcSSatish Balay a->barray = 0; 3222899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3223899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3224899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3225899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32260ac07820SSatish Balay 3227133cdb44SSatish Balay /* hash table stuff */ 3228133cdb44SSatish Balay a->ht = 0; 3229133cdb44SSatish Balay a->hd = 0; 3230133cdb44SSatish Balay a->ht_size = 0; 3231133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 323225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3233133cdb44SSatish Balay a->ht_total_ct = 0; 3234133cdb44SSatish Balay a->ht_insert_ct = 0; 3235133cdb44SSatish Balay 3236899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 32370ac07820SSatish Balay if (oldmat->colmap) { 3238aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32390f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 324048e59246SSatish Balay #else 3241b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 32423bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3243b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 324448e59246SSatish Balay #endif 32450ac07820SSatish Balay } else a->colmap = 0; 32464beb1cfeSHong Zhang 32470ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3248b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 32493bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3250b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 32510ac07820SSatish Balay } else a->garray = 0; 32520ac07820SSatish Balay 3253ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 32540ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 32553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 32560ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 32573bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 32587fff6886SHong Zhang 32592e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 32603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 32612e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 32623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3263140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 32640ac07820SSatish Balay *newmat = mat; 32653a40ed3dSBarry Smith PetscFunctionReturn(0); 32660ac07820SSatish Balay } 326757b952d6SSatish Balay 32684a2ae208SSatish Balay #undef __FUNCT__ 32695bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ" 3270112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 32714683f7a4SShri Abhyankar { 32724683f7a4SShri Abhyankar PetscErrorCode ierr; 32734683f7a4SShri Abhyankar int fd; 32744683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 32754683f7a4SShri Abhyankar PetscScalar *vals,*buf; 3276ce94432eSBarry Smith MPI_Comm comm; 32774683f7a4SShri Abhyankar MPI_Status status; 32784683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 32794683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 32800298fd71SBarry Smith PetscInt *locrowlens = NULL,*procsnz = NULL,*browners = NULL; 32814683f7a4SShri Abhyankar PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 32824683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 32830298fd71SBarry Smith PetscInt *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount; 32844683f7a4SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols; 32854683f7a4SShri Abhyankar 32864683f7a4SShri Abhyankar PetscFunctionBegin; 3287ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 32880298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 32890298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 32904683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 32914683f7a4SShri Abhyankar 32924683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 32934683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 32944683f7a4SShri Abhyankar if (!rank) { 32954683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 32964683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 32974683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 32984683f7a4SShri Abhyankar } 32994683f7a4SShri Abhyankar 33004683f7a4SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 33014683f7a4SShri Abhyankar 33024683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 33034683f7a4SShri Abhyankar M = header[1]; N = header[2]; 33044683f7a4SShri Abhyankar 33054683f7a4SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 33064683f7a4SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 33074683f7a4SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 33084683f7a4SShri Abhyankar 33094683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 33104683f7a4SShri Abhyankar if (sizesset) { 33114683f7a4SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 33124683f7a4SShri Abhyankar } 3313abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 3314abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 33154683f7a4SShri Abhyankar 3316ce94432eSBarry Smith if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices"); 33174683f7a4SShri Abhyankar 33184683f7a4SShri Abhyankar /* 33194683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 33204683f7a4SShri Abhyankar divisible by the blocksize 33214683f7a4SShri Abhyankar */ 33224683f7a4SShri Abhyankar Mbs = M/bs; 33234683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 33244683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 33254683f7a4SShri Abhyankar else Mbs++; 33264683f7a4SShri Abhyankar if (extra_rows && !rank) { 33274683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 33284683f7a4SShri Abhyankar } 33294683f7a4SShri Abhyankar 33304683f7a4SShri Abhyankar /* determine ownership of all rows */ 33314683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 33324683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 33334683f7a4SShri Abhyankar m = mbs*bs; 33344683f7a4SShri Abhyankar } else { /* User set */ 33354683f7a4SShri Abhyankar m = newmat->rmap->n; 33364683f7a4SShri Abhyankar mbs = m/bs; 33374683f7a4SShri Abhyankar } 3338*dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 33394683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 33404683f7a4SShri Abhyankar 33414683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 33424683f7a4SShri Abhyankar if (!rank) { 33434683f7a4SShri Abhyankar mmax = rowners[1]; 33441251c579SMatthew G Knepley for (i=2; i<=size; i++) { 33454683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 33464683f7a4SShri Abhyankar } 33474683f7a4SShri Abhyankar mmax*=bs; 33483964eb88SJed Brown } else mmax = -1; /* unused, but compiler warns anyway */ 33494683f7a4SShri Abhyankar 33504683f7a4SShri Abhyankar rowners[0] = 0; 33514683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 33524683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 33534683f7a4SShri Abhyankar rstart = rowners[rank]; 33544683f7a4SShri Abhyankar rend = rowners[rank+1]; 33554683f7a4SShri Abhyankar 33564683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 33575aa9a6beSBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 33584683f7a4SShri Abhyankar if (!rank) { 33594683f7a4SShri Abhyankar mend = m; 33604683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 33614683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 33624683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 33635aa9a6beSBarry Smith ierr = PetscMalloc(mmax*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 33644683f7a4SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 33654683f7a4SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 33664683f7a4SShri Abhyankar for (j=0; j<m; j++) { 33674683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 33684683f7a4SShri Abhyankar } 33694683f7a4SShri Abhyankar for (i=1; i<size; i++) { 33704683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 33714683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 33724683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 33734683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 33744683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 33754683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 33764683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 33774683f7a4SShri Abhyankar } 33784683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 33794683f7a4SShri Abhyankar } 33804683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 33814683f7a4SShri Abhyankar } else { 33824683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 33834683f7a4SShri Abhyankar } 33844683f7a4SShri Abhyankar 33854683f7a4SShri Abhyankar if (!rank) { 33864683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 33874683f7a4SShri Abhyankar maxnz = procsnz[0]; 33884683f7a4SShri Abhyankar for (i=1; i<size; i++) { 33894683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 33904683f7a4SShri Abhyankar } 33914683f7a4SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 33924683f7a4SShri Abhyankar 33934683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 33944683f7a4SShri Abhyankar nz = procsnz[0]; 33954683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 33964683f7a4SShri Abhyankar mycols = ibuf; 33974683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 33984683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 339926fbe8dcSKarl Rupp if (size == 1) { 340026fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 340126fbe8dcSKarl Rupp } 34024683f7a4SShri Abhyankar 34034683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 34044683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 34054683f7a4SShri Abhyankar nz = procsnz[i]; 34064683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 34074683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 34084683f7a4SShri Abhyankar } 34094683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 34104683f7a4SShri Abhyankar if (size != 1) { 34114683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 34124683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 34134683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 34144683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 34154683f7a4SShri Abhyankar } 34164683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 34174683f7a4SShri Abhyankar } else { 34184683f7a4SShri Abhyankar /* determine buffer space needed for message */ 34194683f7a4SShri Abhyankar nz = 0; 34204683f7a4SShri Abhyankar for (i=0; i<m; i++) { 34214683f7a4SShri Abhyankar nz += locrowlens[i]; 34224683f7a4SShri Abhyankar } 34234683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 34244683f7a4SShri Abhyankar mycols = ibuf; 34254683f7a4SShri Abhyankar /* receive message of column indices*/ 34264683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 34274683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 34284683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 34294683f7a4SShri Abhyankar } 34304683f7a4SShri Abhyankar 34314683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 3432*dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 3433*dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 34344683f7a4SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 34354683f7a4SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 34364683f7a4SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 34374683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 34384683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 34394683f7a4SShri Abhyankar dcount = 0; 34404683f7a4SShri Abhyankar odcount = 0; 34414683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 34424683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 34434683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 34444683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 34454683f7a4SShri Abhyankar if (!mask[tmp]) { 34464683f7a4SShri Abhyankar mask[tmp] = 1; 34474683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 34484683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 34494683f7a4SShri Abhyankar } 34504683f7a4SShri Abhyankar } 34514683f7a4SShri Abhyankar rowcount++; 34524683f7a4SShri Abhyankar } 34534683f7a4SShri Abhyankar 34544683f7a4SShri Abhyankar dlens[i] = dcount; 34554683f7a4SShri Abhyankar odlens[i] = odcount; 34564683f7a4SShri Abhyankar 34574683f7a4SShri Abhyankar /* zero out the mask elements we set */ 34584683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 34594683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 34604683f7a4SShri Abhyankar } 34614683f7a4SShri Abhyankar 34624683f7a4SShri Abhyankar 34634683f7a4SShri Abhyankar if (!sizesset) { 34644683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 34654683f7a4SShri Abhyankar } 34664683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 34674683f7a4SShri Abhyankar 34684683f7a4SShri Abhyankar if (!rank) { 34694683f7a4SShri Abhyankar ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 34704683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 34714683f7a4SShri Abhyankar nz = procsnz[0]; 34724683f7a4SShri Abhyankar vals = buf; 34734683f7a4SShri Abhyankar mycols = ibuf; 34744683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 34754683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 347626fbe8dcSKarl Rupp if (size == 1) { 347726fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 347826fbe8dcSKarl Rupp } 34794683f7a4SShri Abhyankar 34804683f7a4SShri Abhyankar /* insert into matrix */ 34814683f7a4SShri Abhyankar jj = rstart*bs; 34824683f7a4SShri Abhyankar for (i=0; i<m; i++) { 34834683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 34844683f7a4SShri Abhyankar mycols += locrowlens[i]; 34854683f7a4SShri Abhyankar vals += locrowlens[i]; 34864683f7a4SShri Abhyankar jj++; 34874683f7a4SShri Abhyankar } 34884683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 34894683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 34904683f7a4SShri Abhyankar nz = procsnz[i]; 34914683f7a4SShri Abhyankar vals = buf; 34924683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3493479e424cSMichael Lange ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 34944683f7a4SShri Abhyankar } 34954683f7a4SShri Abhyankar /* the last proc */ 34964683f7a4SShri Abhyankar if (size != 1) { 34974683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 34984683f7a4SShri Abhyankar vals = buf; 34994683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35004683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 3501479e424cSMichael Lange ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 35024683f7a4SShri Abhyankar } 35034683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 35044683f7a4SShri Abhyankar } else { 35054683f7a4SShri Abhyankar /* receive numeric values */ 35064683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 35074683f7a4SShri Abhyankar 35084683f7a4SShri Abhyankar /* receive message of values*/ 35094683f7a4SShri Abhyankar vals = buf; 35104683f7a4SShri Abhyankar mycols = ibuf; 3511479e424cSMichael Lange ierr = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 35124683f7a4SShri Abhyankar 35134683f7a4SShri Abhyankar /* insert into matrix */ 35144683f7a4SShri Abhyankar jj = rstart*bs; 35154683f7a4SShri Abhyankar for (i=0; i<m; i++) { 35164683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 35174683f7a4SShri Abhyankar mycols += locrowlens[i]; 35184683f7a4SShri Abhyankar vals += locrowlens[i]; 35194683f7a4SShri Abhyankar jj++; 35204683f7a4SShri Abhyankar } 35214683f7a4SShri Abhyankar } 35224683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 35234683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 35244683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 35254683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 35264683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 35274683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 35284683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 35294683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 35304683f7a4SShri Abhyankar PetscFunctionReturn(0); 35314683f7a4SShri Abhyankar } 35324683f7a4SShri Abhyankar 35334683f7a4SShri Abhyankar #undef __FUNCT__ 35344a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3535133cdb44SSatish Balay /*@ 3536133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3537133cdb44SSatish Balay 3538133cdb44SSatish Balay Input Parameters: 3539133cdb44SSatish Balay . mat - the matrix 3540133cdb44SSatish Balay . fact - factor 3541133cdb44SSatish Balay 3542c5eb9154SBarry Smith Not Collective, each process can use a different factor 3543fee21e36SBarry Smith 35448c890885SBarry Smith Level: advanced 35458c890885SBarry Smith 3546133cdb44SSatish Balay Notes: 35478c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3548133cdb44SSatish Balay 3549133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3550133cdb44SSatish Balay 3551133cdb44SSatish Balay .seealso: MatSetOption() 3552133cdb44SSatish Balay @*/ 35537087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3554133cdb44SSatish Balay { 35554ac538c5SBarry Smith PetscErrorCode ierr; 35565bf65638SKris Buschelman 35575bf65638SKris Buschelman PetscFunctionBegin; 35584ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 35595bf65638SKris Buschelman PetscFunctionReturn(0); 35605bf65638SKris Buschelman } 35615bf65638SKris Buschelman 35625bf65638SKris Buschelman #undef __FUNCT__ 35635bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 35647087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 35655bf65638SKris Buschelman { 356625fdafccSSatish Balay Mat_MPIBAIJ *baij; 3567133cdb44SSatish Balay 3568133cdb44SSatish Balay PetscFunctionBegin; 3569133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3570133cdb44SSatish Balay baij->ht_fact = fact; 3571133cdb44SSatish Balay PetscFunctionReturn(0); 3572133cdb44SSatish Balay } 3573f2a5309cSSatish Balay 35744a2ae208SSatish Balay #undef __FUNCT__ 35754a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 35769230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3577f2a5309cSSatish Balay { 3578f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 35795fd66863SKarl Rupp 3580f2a5309cSSatish Balay PetscFunctionBegin; 3581f2a5309cSSatish Balay *Ad = a->A; 3582f2a5309cSSatish Balay *Ao = a->B; 3583195d93cdSBarry Smith *colmap = a->garray; 3584f2a5309cSSatish Balay PetscFunctionReturn(0); 3585f2a5309cSSatish Balay } 358685535b8eSBarry Smith 358785535b8eSBarry Smith /* 358885535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 358985535b8eSBarry Smith */ 359085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 359185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 359285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 359385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 359485535b8eSBarry Smith #endif 359585535b8eSBarry Smith 359685535b8eSBarry Smith #undef __FUNCT__ 359785535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 359885535b8eSBarry Smith /*@C 359985535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 360085535b8eSBarry Smith 360185535b8eSBarry Smith Collective on Mat 360285535b8eSBarry Smith 360385535b8eSBarry Smith Input Parameters: 360485535b8eSBarry Smith + mat - the matrix 360585535b8eSBarry Smith . min - number of input rows 360685535b8eSBarry Smith . im - input rows 360785535b8eSBarry Smith . nin - number of input columns 360885535b8eSBarry Smith . in - input columns 360985535b8eSBarry Smith . v - numerical values input 361085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 361185535b8eSBarry Smith 361285535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 361385535b8eSBarry Smith 361485535b8eSBarry Smith Level: advanced 361585535b8eSBarry Smith 361685535b8eSBarry Smith .seealso: MatSetValuesBlocked() 361785535b8eSBarry Smith @*/ 361885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 361985535b8eSBarry Smith { 362085535b8eSBarry Smith /* convert input arguments to C version */ 362185535b8eSBarry Smith Mat mat = *matin; 362285535b8eSBarry Smith PetscInt m = *min, n = *nin; 362385535b8eSBarry Smith InsertMode addv = *addvin; 362485535b8eSBarry Smith 362585535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 362685535b8eSBarry Smith const MatScalar *value; 362785535b8eSBarry Smith MatScalar *barray = baij->barray; 3628ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 362985535b8eSBarry Smith PetscErrorCode ierr; 363085535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 363185535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3632d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 363385535b8eSBarry Smith 363485535b8eSBarry Smith PetscFunctionBegin; 363585535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 363626fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 363785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3638e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3639e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 364085535b8eSBarry Smith #endif 364185535b8eSBarry Smith if (mat->assembled) { 364285535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 364385535b8eSBarry Smith mat->assembled = PETSC_FALSE; 364485535b8eSBarry Smith } 364585535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 364685535b8eSBarry Smith 364785535b8eSBarry Smith 364885535b8eSBarry Smith if (!barray) { 364985535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 365085535b8eSBarry Smith baij->barray = barray; 365185535b8eSBarry Smith } 365285535b8eSBarry Smith 365326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 365426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 365526fbe8dcSKarl Rupp 365685535b8eSBarry Smith for (i=0; i<m; i++) { 365785535b8eSBarry Smith if (im[i] < 0) continue; 365885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3659e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 366085535b8eSBarry Smith #endif 366185535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 366285535b8eSBarry Smith row = im[i] - rstart; 366385535b8eSBarry Smith for (j=0; j<n; j++) { 366485535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 366585535b8eSBarry Smith if ((roworiented) && (n == 1)) { 366685535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 366785535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 366885535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 366985535b8eSBarry Smith } else { /* Here a copy is required */ 367085535b8eSBarry Smith if (roworiented) { 367185535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 367285535b8eSBarry Smith } else { 367385535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 367485535b8eSBarry Smith } 367585535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 367685535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 367785535b8eSBarry Smith *barray++ = *value++; 367885535b8eSBarry Smith } 367985535b8eSBarry Smith } 368085535b8eSBarry Smith barray -=bs2; 368185535b8eSBarry Smith } 368285535b8eSBarry Smith 368385535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 368485535b8eSBarry Smith col = in[j] - cstart; 368597e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 368626fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 368785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3688cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 368985535b8eSBarry Smith #endif 369085535b8eSBarry Smith else { 369185535b8eSBarry Smith if (mat->was_assembled) { 369285535b8eSBarry Smith if (!baij->colmap) { 3693ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 369485535b8eSBarry Smith } 369585535b8eSBarry Smith 369685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 369785535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 369885535b8eSBarry Smith { PetscInt data; 369985535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3700e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 370185535b8eSBarry Smith } 370285535b8eSBarry Smith #else 3703e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 370485535b8eSBarry Smith #endif 370585535b8eSBarry Smith #endif 370685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 370785535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 370885535b8eSBarry Smith col = (col - 1)/bs; 370985535b8eSBarry Smith #else 371085535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 371185535b8eSBarry Smith #endif 371285535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3713ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 371485535b8eSBarry Smith col = in[j]; 371585535b8eSBarry Smith } 371626fbe8dcSKarl Rupp } else col = in[j]; 371797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 371885535b8eSBarry Smith } 371985535b8eSBarry Smith } 372085535b8eSBarry Smith } else { 372185535b8eSBarry Smith if (!baij->donotstash) { 372285535b8eSBarry Smith if (roworiented) { 372385535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 372485535b8eSBarry Smith } else { 372585535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 372685535b8eSBarry Smith } 372785535b8eSBarry Smith } 372885535b8eSBarry Smith } 372985535b8eSBarry Smith } 373085535b8eSBarry Smith 373185535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 373285535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 373385535b8eSBarry Smith PetscFunctionReturn(0); 373485535b8eSBarry Smith } 3735dfb205c3SBarry Smith 3736dfb205c3SBarry Smith #undef __FUNCT__ 3737dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays" 3738dfb205c3SBarry Smith /*@ 3739dfb205c3SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard 3740dfb205c3SBarry Smith CSR format the local rows. 3741dfb205c3SBarry Smith 3742dfb205c3SBarry Smith Collective on MPI_Comm 3743dfb205c3SBarry Smith 3744dfb205c3SBarry Smith Input Parameters: 3745dfb205c3SBarry Smith + comm - MPI communicator 3746dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3747dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3748dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3749dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3750dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3751dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3752dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3753dfb205c3SBarry Smith . i - row indices 3754dfb205c3SBarry Smith . j - column indices 3755dfb205c3SBarry Smith - a - matrix values 3756dfb205c3SBarry Smith 3757dfb205c3SBarry Smith Output Parameter: 3758dfb205c3SBarry Smith . mat - the matrix 3759dfb205c3SBarry Smith 3760dfb205c3SBarry Smith Level: intermediate 3761dfb205c3SBarry Smith 3762dfb205c3SBarry Smith Notes: 3763dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3764dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3765dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3766dfb205c3SBarry Smith 37673adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 37683adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 37693adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 37703adadaf3SJed Brown with column-major ordering within blocks. 37713adadaf3SJed Brown 3772dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3773dfb205c3SBarry Smith 3774dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3775dfb205c3SBarry Smith 3776dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 377769b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3778dfb205c3SBarry Smith @*/ 37797087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3780dfb205c3SBarry Smith { 3781dfb205c3SBarry Smith PetscErrorCode ierr; 3782dfb205c3SBarry Smith 3783dfb205c3SBarry Smith PetscFunctionBegin; 3784f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3785dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3786dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3787dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3788dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3789d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3790dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3791d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3792dfb205c3SBarry Smith PetscFunctionReturn(0); 3793dfb205c3SBarry Smith } 3794