xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision dcca6d9d80ebd869fe6029bd05a3aa9faafef49e)
179bdfe76SSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
3c6db04a5SJed Brown #include <petscblaslapack.h>
465a92638SMatthew G. Knepley #include <petscsf.h>
579bdfe76SSatish Balay 
609573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
7ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPIBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
909573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1009573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1109573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
1209573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
1309573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar,Vec,Vec);
1493fea6afSBarry Smith 
154a2ae208SSatish Balay #undef __FUNCT__
16985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
17985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
187843d17aSBarry Smith {
197843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
20dfbe8321SBarry Smith   PetscErrorCode ierr;
21985db425SBarry Smith   PetscInt       i,*idxb = 0;
2287828ca2SBarry Smith   PetscScalar    *va,*vb;
237843d17aSBarry Smith   Vec            vtmp;
247843d17aSBarry Smith 
257843d17aSBarry Smith   PetscFunctionBegin;
26985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
271ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
28985db425SBarry Smith   if (idx) {
2926fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
3026fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
3126fbe8dcSKarl Rupp     }
32985db425SBarry Smith   }
337843d17aSBarry Smith 
34d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
35d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
36985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
371ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
387843d17aSBarry Smith 
39d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
4026fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
4126fbe8dcSKarl Rupp       va[i] = vb[i];
4226fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
4326fbe8dcSKarl Rupp     }
447843d17aSBarry Smith   }
457843d17aSBarry Smith 
461ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
471ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
48c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
496bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
507843d17aSBarry Smith   PetscFunctionReturn(0);
517843d17aSBarry Smith }
527843d17aSBarry Smith 
534a2ae208SSatish Balay #undef __FUNCT__
544a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
557087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
567fc3c18eSBarry Smith {
577fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
58dfbe8321SBarry Smith   PetscErrorCode ierr;
597fc3c18eSBarry Smith 
607fc3c18eSBarry Smith   PetscFunctionBegin;
617fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
627fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
637fc3c18eSBarry Smith   PetscFunctionReturn(0);
647fc3c18eSBarry Smith }
657fc3c18eSBarry Smith 
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
687087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
697fc3c18eSBarry Smith {
707fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
71dfbe8321SBarry Smith   PetscErrorCode ierr;
727fc3c18eSBarry Smith 
737fc3c18eSBarry Smith   PetscFunctionBegin;
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
757fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
767fc3c18eSBarry Smith   PetscFunctionReturn(0);
777fc3c18eSBarry Smith }
787fc3c18eSBarry Smith 
79537820f0SBarry Smith /*
80537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
82e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
8357b952d6SSatish Balay    length of colmap equals the global matrix length.
8457b952d6SSatish Balay */
854a2ae208SSatish Balay #undef __FUNCT__
86ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private"
87ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
8857b952d6SSatish Balay {
8957b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9057b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
916849ba73SBarry Smith   PetscErrorCode ierr;
92d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9357b952d6SSatish Balay 
94d64ed03dSBarry Smith   PetscFunctionBegin;
95aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
96e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
9748e59246SSatish Balay   for (i=0; i<nbs; i++) {
983861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
9948e59246SSatish Balay   }
10048e59246SSatish Balay #else
101b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
1023bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
103b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10548e59246SSatish Balay #endif
1063a40ed3dSBarry Smith   PetscFunctionReturn(0);
10757b952d6SSatish Balay }
10857b952d6SSatish Balay 
109f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11080c1aa95SSatish Balay   { \
11180c1aa95SSatish Balay  \
11280c1aa95SSatish Balay     brow = row/bs;  \
11380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
114ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11580c1aa95SSatish Balay     bcol = col/bs; \
11680c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
117ab26458aSBarry Smith     low  = 0; high = nrow; \
118ab26458aSBarry Smith     while (high-low > 3) { \
119ab26458aSBarry Smith       t = (low+high)/2; \
120ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
121ab26458aSBarry Smith       else              low  = t; \
122ab26458aSBarry Smith     } \
123ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
12480c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
12580c1aa95SSatish Balay       if (rp[_i] == bcol) { \
12680c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
127eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
128eada6651SSatish Balay         else                    *bap  = value;  \
129ac7a638eSSatish Balay         goto a_noinsert; \
13080c1aa95SSatish Balay       } \
13180c1aa95SSatish Balay     } \
13289280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
133e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
134fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13580c1aa95SSatish Balay     N = nrow++ - 1;  \
13680c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
13780c1aa95SSatish Balay     for (ii=N; ii>=_i; ii--) { \
13880c1aa95SSatish Balay       rp[ii+1] = rp[ii]; \
1393eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14080c1aa95SSatish Balay     } \
1413eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14280c1aa95SSatish Balay     rp[_i]                      = bcol;  \
14380c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
144ac7a638eSSatish Balay a_noinsert:; \
14580c1aa95SSatish Balay     ailen[brow] = nrow; \
14680c1aa95SSatish Balay   }
14757b952d6SSatish Balay 
148ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
149ac7a638eSSatish Balay   { \
150ac7a638eSSatish Balay     brow = row/bs;  \
151ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
152ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
153ac7a638eSSatish Balay     bcol = col/bs; \
154ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
155ac7a638eSSatish Balay     low  = 0; high = nrow; \
156ac7a638eSSatish Balay     while (high-low > 3) { \
157ac7a638eSSatish Balay       t = (low+high)/2; \
158ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
159ac7a638eSSatish Balay       else              low  = t; \
160ac7a638eSSatish Balay     } \
161ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
162ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
163ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
164ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
165ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
166ac7a638eSSatish Balay         else                    *bap  = value;  \
167ac7a638eSSatish Balay         goto b_noinsert; \
168ac7a638eSSatish Balay       } \
169ac7a638eSSatish Balay     } \
17089280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
171e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
172fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
173ac7a638eSSatish Balay     N = nrow++ - 1;  \
174ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
175ac7a638eSSatish Balay     for (ii=N; ii>=_i; ii--) { \
176ac7a638eSSatish Balay       rp[ii+1] = rp[ii]; \
1773eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
178ac7a638eSSatish Balay     } \
1793eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
180ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
181ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
182ac7a638eSSatish Balay b_noinsert:; \
183ac7a638eSSatish Balay     bilen[brow] = nrow; \
184ac7a638eSSatish Balay   }
185ac7a638eSSatish Balay 
1864a2ae208SSatish Balay #undef __FUNCT__
1874a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
188b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
18957b952d6SSatish Balay {
19057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19193fea6afSBarry Smith   MatScalar      value;
192ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
193dfbe8321SBarry Smith   PetscErrorCode ierr;
194b24ad042SBarry Smith   PetscInt       i,j,row,col;
195d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
196d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
197d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
19857b952d6SSatish Balay 
199eada6651SSatish Balay   /* Some Variables required in the macro */
20080c1aa95SSatish Balay   Mat         A     = baij->A;
20180c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
202b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2033eda8832SBarry Smith   MatScalar   *aa   =a->a;
204ac7a638eSSatish Balay 
205ac7a638eSSatish Balay   Mat         B     = baij->B;
206ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
207b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2083eda8832SBarry Smith   MatScalar   *ba   =b->a;
209ac7a638eSSatish Balay 
210b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
211b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
2123eda8832SBarry Smith   MatScalar *ap,*bap;
21380c1aa95SSatish Balay 
214d64ed03dSBarry Smith   PetscFunctionBegin;
21571fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
21657b952d6SSatish Balay   for (i=0; i<m; i++) {
2175ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
219e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
220639f9d9dSBarry Smith #endif
22157b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22257b952d6SSatish Balay       row = im[i] - rstart_orig;
22357b952d6SSatish Balay       for (j=0; j<n; j++) {
22457b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
22557b952d6SSatish Balay           col = in[j] - cstart_orig;
226db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
227db4deed7SKarl Rupp           else             value = v[i+j*m];
228f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
22980c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23073959e64SBarry Smith         } else if (in[j] < 0) continue;
2312515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
232660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
233639f9d9dSBarry Smith #endif
23457b952d6SSatish Balay         else {
23557b952d6SSatish Balay           if (mat->was_assembled) {
236905e6a2fSBarry Smith             if (!baij->colmap) {
237ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
238905e6a2fSBarry Smith             }
239aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2400f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
241bba1ac68SSatish Balay             col  = col - 1;
24248e59246SSatish Balay #else
243bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24448e59246SSatish Balay #endif
245c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
246ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2478295de27SSatish Balay               col  =  in[j];
2489bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2499bf004c3SSatish Balay               B    = baij->B;
2509bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2519bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2529bf004c3SSatish Balay               ba   =b->a;
253c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
254c9ef50b2SBarry Smith             else col += in[j]%bs;
2558295de27SSatish Balay           } else col = in[j];
256db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
257db4deed7SKarl Rupp           else             value = v[i+j*m];
25890da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25990da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
26057b952d6SSatish Balay         }
26157b952d6SSatish Balay       }
262d64ed03dSBarry Smith     } else {
2634cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
26490f02eecSBarry Smith       if (!baij->donotstash) {
2655080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
266ff2fd236SBarry Smith         if (roworiented) {
267b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
268ff2fd236SBarry Smith         } else {
269b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
27057b952d6SSatish Balay         }
27157b952d6SSatish Balay       }
27257b952d6SSatish Balay     }
27390f02eecSBarry Smith   }
2743a40ed3dSBarry Smith   PetscFunctionReturn(0);
27557b952d6SSatish Balay }
27657b952d6SSatish Balay 
2774a2ae208SSatish Balay #undef __FUNCT__
27897e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27997e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
280ab26458aSBarry Smith {
281ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
282dd6ea824SBarry Smith   const PetscScalar *value;
283f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
284ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
285dfbe8321SBarry Smith   PetscErrorCode    ierr;
286899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
287899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
288d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
289ab26458aSBarry Smith 
290b16ae2b1SBarry Smith   PetscFunctionBegin;
29130793edcSSatish Balay   if (!barray) {
29282502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29382502324SSatish Balay     baij->barray = barray;
29430793edcSSatish Balay   }
29530793edcSSatish Balay 
29626fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
29726fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
29826fbe8dcSKarl Rupp 
299ab26458aSBarry Smith   for (i=0; i<m; i++) {
3005ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
302e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
303ab26458aSBarry Smith #endif
304ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
305ab26458aSBarry Smith       row = im[i] - rstart;
306ab26458aSBarry Smith       for (j=0; j<n; j++) {
30715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
309f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
31015b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
311f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31215b57d14SSatish Balay         } else { /* Here a copy is required */
313ab26458aSBarry Smith           if (roworiented) {
31453ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
315ab26458aSBarry Smith           } else {
31653ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
317abef11f7SSatish Balay           }
31853ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
31926fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
32053ef36baSBarry Smith             barray += bs;
32147513183SBarry Smith           }
32230793edcSSatish Balay           barray -= bs2;
32315b57d14SSatish Balay         }
324abef11f7SSatish Balay 
325abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
326abef11f7SSatish Balay           col  = in[j] - cstart;
32797e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
32826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3292515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
330cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
331ab26458aSBarry Smith #endif
332ab26458aSBarry Smith         else {
333ab26458aSBarry Smith           if (mat->was_assembled) {
334ab26458aSBarry Smith             if (!baij->colmap) {
335ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
336ab26458aSBarry Smith             }
337a5eb4965SSatish Balay 
3382515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
339aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
340b24ad042SBarry Smith             { PetscInt data;
3410f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
342e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
343fa46199cSSatish Balay             }
34448e59246SSatish Balay #else
345e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
346a5eb4965SSatish Balay #endif
34748e59246SSatish Balay #endif
348aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3490f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
350fa46199cSSatish Balay             col  = (col - 1)/bs;
35148e59246SSatish Balay #else
352a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35348e59246SSatish Balay #endif
3540e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
355ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
356ab26458aSBarry Smith               col  =  in[j];
3570e9bae81SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]);
358db4deed7SKarl Rupp           } else col = in[j];
35997e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
360ab26458aSBarry Smith         }
361ab26458aSBarry Smith       }
362d64ed03dSBarry Smith     } else {
3634cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
364ab26458aSBarry Smith       if (!baij->donotstash) {
365ff2fd236SBarry Smith         if (roworiented) {
3666fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
367ff2fd236SBarry Smith         } else {
3686fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
369ff2fd236SBarry Smith         }
370abef11f7SSatish Balay       }
371ab26458aSBarry Smith     }
372ab26458aSBarry Smith   }
3733a40ed3dSBarry Smith   PetscFunctionReturn(0);
374ab26458aSBarry Smith }
3756fa18ffdSBarry Smith 
3760bdbc534SSatish Balay #define HASH_KEY 0.6180339887
377b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
378b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
379b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3804a2ae208SSatish Balay #undef __FUNCT__
38197e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38297e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3830bdbc534SSatish Balay {
3840bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
385ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
386dfbe8321SBarry Smith   PetscErrorCode ierr;
387b24ad042SBarry Smith   PetscInt       i,j,row,col;
388d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
389d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
390d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
391329f5518SBarry Smith   PetscReal      tmp;
3923eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3932515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
394b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3954a15367fSSatish Balay #endif
3960bdbc534SSatish Balay 
3970bdbc534SSatish Balay   PetscFunctionBegin;
39871fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
3990bdbc534SSatish Balay   for (i=0; i<m; i++) {
4002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
401e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
402e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4030bdbc534SSatish Balay #endif
4040bdbc534SSatish Balay     row = im[i];
405c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4060bdbc534SSatish Balay       for (j=0; j<n; j++) {
4070bdbc534SSatish Balay         col = in[j];
408db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
409db4deed7SKarl Rupp         else             value = v[i+j*m];
410b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
411c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
412c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4130bdbc534SSatish Balay 
414c2760754SSatish Balay 
415c2760754SSatish Balay         idx = h1;
4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
417187ce0cbSSatish Balay         insert_ct++;
418187ce0cbSSatish Balay         total_ct++;
419187ce0cbSSatish Balay         if (HT[idx] != key) {
420187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
421187ce0cbSSatish Balay           if (idx == size) {
422187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
423f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
424187ce0cbSSatish Balay           }
425187ce0cbSSatish Balay         }
426187ce0cbSSatish Balay #else
427c2760754SSatish Balay         if (HT[idx] != key) {
428c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
429c2760754SSatish Balay           if (idx == size) {
430c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
431f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
432c2760754SSatish Balay           }
433c2760754SSatish Balay         }
434187ce0cbSSatish Balay #endif
435c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
436c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
437c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4380bdbc534SSatish Balay       }
43926fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
440ff2fd236SBarry Smith       if (roworiented) {
441b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
442ff2fd236SBarry Smith       } else {
443b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4440bdbc534SSatish Balay       }
4450bdbc534SSatish Balay     }
4460bdbc534SSatish Balay   }
4472515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
448187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
449187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
450187ce0cbSSatish Balay #endif
4510bdbc534SSatish Balay   PetscFunctionReturn(0);
4520bdbc534SSatish Balay }
4530bdbc534SSatish Balay 
4544a2ae208SSatish Balay #undef __FUNCT__
45597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
45697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4570bdbc534SSatish Balay {
4580bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
459ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
460dfbe8321SBarry Smith   PetscErrorCode    ierr;
461b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
462899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
463d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
464b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
465329f5518SBarry Smith   PetscReal         tmp;
4663eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
467dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4682515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
469b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4704a15367fSSatish Balay #endif
4710bdbc534SSatish Balay 
472d0a41580SSatish Balay   PetscFunctionBegin;
47326fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
47426fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
47526fbe8dcSKarl Rupp 
4760bdbc534SSatish Balay   for (i=0; i<m; i++) {
4772515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
478e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
479e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4800bdbc534SSatish Balay #endif
4810bdbc534SSatish Balay     row = im[i];
482ab715e2cSSatish Balay     v_t = v + i*nbs2;
483c2760754SSatish Balay     if (row >= rstart && row < rend) {
4840bdbc534SSatish Balay       for (j=0; j<n; j++) {
4850bdbc534SSatish Balay         col = in[j];
4860bdbc534SSatish Balay 
4870bdbc534SSatish Balay         /* Look up into the Hash Table */
488c2760754SSatish Balay         key = row*Nbs+col+1;
489c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4900bdbc534SSatish Balay 
491c2760754SSatish Balay         idx = h1;
4922515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
493187ce0cbSSatish Balay         total_ct++;
494187ce0cbSSatish Balay         insert_ct++;
495187ce0cbSSatish Balay         if (HT[idx] != key) {
496187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
497187ce0cbSSatish Balay           if (idx == size) {
498187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
499f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
500187ce0cbSSatish Balay           }
501187ce0cbSSatish Balay         }
502187ce0cbSSatish Balay #else
503c2760754SSatish Balay         if (HT[idx] != key) {
504c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
505c2760754SSatish Balay           if (idx == size) {
506c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
507f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
508c2760754SSatish Balay           }
509c2760754SSatish Balay         }
510187ce0cbSSatish Balay #endif
511c2760754SSatish Balay         baij_a = HD[idx];
5120bdbc534SSatish Balay         if (roworiented) {
513c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
514187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
515187ce0cbSSatish Balay           value = v_t;
516187ce0cbSSatish Balay           v_t  += bs;
517fef45726SSatish Balay           if (addv == ADD_VALUES) {
518c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
519c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
520fef45726SSatish Balay                 baij_a[jj] += *value++;
521b4cc0f5aSSatish Balay               }
522b4cc0f5aSSatish Balay             }
523fef45726SSatish Balay           } else {
524c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
525c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
526fef45726SSatish Balay                 baij_a[jj] = *value++;
527fef45726SSatish Balay               }
528fef45726SSatish Balay             }
529fef45726SSatish Balay           }
5300bdbc534SSatish Balay         } else {
5310bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
532fef45726SSatish Balay           if (addv == ADD_VALUES) {
533b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5340bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
535fef45726SSatish Balay                 baij_a[jj] += *value++;
536fef45726SSatish Balay               }
537fef45726SSatish Balay             }
538fef45726SSatish Balay           } else {
539fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
540fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
541fef45726SSatish Balay                 baij_a[jj] = *value++;
542fef45726SSatish Balay               }
543b4cc0f5aSSatish Balay             }
5440bdbc534SSatish Balay           }
5450bdbc534SSatish Balay         }
5460bdbc534SSatish Balay       }
5470bdbc534SSatish Balay     } else {
5480bdbc534SSatish Balay       if (!baij->donotstash) {
5490bdbc534SSatish Balay         if (roworiented) {
5508798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5510bdbc534SSatish Balay         } else {
5528798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5530bdbc534SSatish Balay         }
5540bdbc534SSatish Balay       }
5550bdbc534SSatish Balay     }
5560bdbc534SSatish Balay   }
5572515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
558187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
559187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
560187ce0cbSSatish Balay #endif
5610bdbc534SSatish Balay   PetscFunctionReturn(0);
5620bdbc534SSatish Balay }
563133cdb44SSatish Balay 
5644a2ae208SSatish Balay #undef __FUNCT__
5654a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
566b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
567d6de1c52SSatish Balay {
568d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5696849ba73SBarry Smith   PetscErrorCode ierr;
570d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
571d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
572d6de1c52SSatish Balay 
573133cdb44SSatish Balay   PetscFunctionBegin;
574d6de1c52SSatish Balay   for (i=0; i<m; i++) {
575e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
576e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
577d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
578d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
579d6de1c52SSatish Balay       for (j=0; j<n; j++) {
580e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
581e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
582d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
583d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
58498dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
585d64ed03dSBarry Smith         } else {
586905e6a2fSBarry Smith           if (!baij->colmap) {
587ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
588905e6a2fSBarry Smith           }
589aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
5900f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
591fa46199cSSatish Balay           data--;
59248e59246SSatish Balay #else
59348e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
59448e59246SSatish Balay #endif
59548e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
596d9d09a02SSatish Balay           else {
59748e59246SSatish Balay             col  = data + idxn[j]%bs;
59898dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
599d6de1c52SSatish Balay           }
600d6de1c52SSatish Balay         }
601d6de1c52SSatish Balay       }
602f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
603d6de1c52SSatish Balay   }
6043a40ed3dSBarry Smith   PetscFunctionReturn(0);
605d6de1c52SSatish Balay }
606d6de1c52SSatish Balay 
6074a2ae208SSatish Balay #undef __FUNCT__
6084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
609dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
610d6de1c52SSatish Balay {
611d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
612d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
613dfbe8321SBarry Smith   PetscErrorCode ierr;
614d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
615329f5518SBarry Smith   PetscReal      sum = 0.0;
6163eda8832SBarry Smith   MatScalar      *v;
617d6de1c52SSatish Balay 
618d64ed03dSBarry Smith   PetscFunctionBegin;
619d6de1c52SSatish Balay   if (baij->size == 1) {
620064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
621d6de1c52SSatish Balay   } else {
622d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
623d6de1c52SSatish Balay       v  = amat->a;
6248a62d963SHong Zhang       nz = amat->nz*bs2;
6258a62d963SHong Zhang       for (i=0; i<nz; i++) {
626329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
627d6de1c52SSatish Balay       }
628d6de1c52SSatish Balay       v  = bmat->a;
6298a62d963SHong Zhang       nz = bmat->nz*bs2;
6308a62d963SHong Zhang       for (i=0; i<nz; i++) {
631329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
632d6de1c52SSatish Balay       }
633ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6348f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6358a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6368a62d963SHong Zhang       PetscReal *tmp,*tmp2;
637899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
638*dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr);
639d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6408a62d963SHong Zhang       v    = amat->a; jj = amat->j;
6418a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6428a62d963SHong Zhang         for (j=0; j<bs; j++) {
6438a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6448a62d963SHong Zhang           for (row=0; row<bs; row++) {
6458a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6468a62d963SHong Zhang           }
6478a62d963SHong Zhang         }
6488a62d963SHong Zhang         jj++;
6498a62d963SHong Zhang       }
6508a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6518a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6528a62d963SHong Zhang         for (j=0; j<bs; j++) {
6538a62d963SHong Zhang           col = bs*garray[*jj] + j;
6548a62d963SHong Zhang           for (row=0; row<bs; row++) {
6558a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6568a62d963SHong Zhang           }
6578a62d963SHong Zhang         }
6588a62d963SHong Zhang         jj++;
6598a62d963SHong Zhang       }
660ce94432eSBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6618a62d963SHong Zhang       *nrm = 0.0;
662d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6638a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6648a62d963SHong Zhang       }
665fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
6668a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
667577dd1f9SKris Buschelman       PetscReal *sums;
668cb9801acSJed Brown       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr);
6698a62d963SHong Zhang       sum  = 0.0;
6708a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6718a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6728a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
6738a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6748a62d963SHong Zhang         for (i=0; i<nz; i++) {
6758a62d963SHong Zhang           for (col=0; col<bs; col++) {
6768a62d963SHong Zhang             for (row=0; row<bs; row++) {
6778a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6788a62d963SHong Zhang             }
6798a62d963SHong Zhang           }
6808a62d963SHong Zhang         }
6818a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
6828a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
6838a62d963SHong Zhang         for (i=0; i<nz; i++) {
6848a62d963SHong Zhang           for (col=0; col<bs; col++) {
6858a62d963SHong Zhang             for (row=0; row<bs; row++) {
6868a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6878a62d963SHong Zhang             }
6888a62d963SHong Zhang           }
6898a62d963SHong Zhang         }
6908a62d963SHong Zhang         for (row=0; row<bs; row++) {
6918a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
6928a62d963SHong Zhang         }
6938a62d963SHong Zhang       }
694ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
695577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
696ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
697d64ed03dSBarry Smith   }
6983a40ed3dSBarry Smith   PetscFunctionReturn(0);
699d6de1c52SSatish Balay }
70057b952d6SSatish Balay 
701fef45726SSatish Balay /*
702fef45726SSatish Balay   Creates the hash table, and sets the table
703fef45726SSatish Balay   This table is created only once.
704fef45726SSatish Balay   If new entried need to be added to the matrix
705fef45726SSatish Balay   then the hash table has to be destroyed and
706fef45726SSatish Balay   recreated.
707fef45726SSatish Balay */
7084a2ae208SSatish Balay #undef __FUNCT__
7094a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
710dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
711596b8d2eSBarry Smith {
712596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
713596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
714596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
715b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7166849ba73SBarry Smith   PetscErrorCode ierr;
717fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
718899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
719b24ad042SBarry Smith   PetscInt       *HT,key;
7203eda8832SBarry Smith   MatScalar      **HD;
721329f5518SBarry Smith   PetscReal      tmp;
7226cf91177SBarry Smith #if defined(PETSC_USE_INFO)
723b24ad042SBarry Smith   PetscInt ct=0,max=0;
7244a15367fSSatish Balay #endif
725fef45726SSatish Balay 
726d64ed03dSBarry Smith   PetscFunctionBegin;
727fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
728fef45726SSatish Balay 
729fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
730fca92195SBarry Smith   ht_size       = baij->ht_size;
7310bdbc534SSatish Balay 
732fef45726SSatish Balay   /* Allocate Memory for Hash Table */
733*dcca6d9dSJed Brown   ierr = PetscMalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
734fca92195SBarry Smith   ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr);
735fca92195SBarry Smith   ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr);
736b9e4cc15SSatish Balay   HD   = baij->hd;
737a07cd24cSSatish Balay   HT   = baij->ht;
738b9e4cc15SSatish Balay 
739596b8d2eSBarry Smith   /* Loop Over A */
7400bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
741596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7420bdbc534SSatish Balay       row = i+rstart;
7430bdbc534SSatish Balay       col = aj[j]+cstart;
744596b8d2eSBarry Smith 
745187ce0cbSSatish Balay       key = row*Nbs + col + 1;
746fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
747fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
748fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
749fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
750fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
751596b8d2eSBarry Smith           break;
7526cf91177SBarry Smith #if defined(PETSC_USE_INFO)
753187ce0cbSSatish Balay         } else {
754187ce0cbSSatish Balay           ct++;
755187ce0cbSSatish Balay #endif
756596b8d2eSBarry Smith         }
757187ce0cbSSatish Balay       }
7586cf91177SBarry Smith #if defined(PETSC_USE_INFO)
759187ce0cbSSatish Balay       if (k> max) max = k;
760187ce0cbSSatish Balay #endif
761596b8d2eSBarry Smith     }
762596b8d2eSBarry Smith   }
763596b8d2eSBarry Smith   /* Loop Over B */
7640bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
765596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7660bdbc534SSatish Balay       row = i+rstart;
7670bdbc534SSatish Balay       col = garray[bj[j]];
768187ce0cbSSatish Balay       key = row*Nbs + col + 1;
769fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
770fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
771fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
772fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
773fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
774596b8d2eSBarry Smith           break;
7756cf91177SBarry Smith #if defined(PETSC_USE_INFO)
776187ce0cbSSatish Balay         } else {
777187ce0cbSSatish Balay           ct++;
778187ce0cbSSatish Balay #endif
779596b8d2eSBarry Smith         }
780187ce0cbSSatish Balay       }
7816cf91177SBarry Smith #if defined(PETSC_USE_INFO)
782187ce0cbSSatish Balay       if (k> max) max = k;
783187ce0cbSSatish Balay #endif
784596b8d2eSBarry Smith     }
785596b8d2eSBarry Smith   }
786596b8d2eSBarry Smith 
787596b8d2eSBarry Smith   /* Print Summary */
7886cf91177SBarry Smith #if defined(PETSC_USE_INFO)
789fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
79026fbe8dcSKarl Rupp     if (HT[i]) j++;
791c38d4ed2SBarry Smith   }
7921e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
793187ce0cbSSatish Balay #endif
7943a40ed3dSBarry Smith   PetscFunctionReturn(0);
795596b8d2eSBarry Smith }
79657b952d6SSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
7984a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
799dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
800bbb85fb3SSatish Balay {
801bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
802dfbe8321SBarry Smith   PetscErrorCode ierr;
803b24ad042SBarry Smith   PetscInt       nstash,reallocs;
804bbb85fb3SSatish Balay   InsertMode     addv;
805bbb85fb3SSatish Balay 
806bbb85fb3SSatish Balay   PetscFunctionBegin;
80726fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
808bbb85fb3SSatish Balay 
809bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
810ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
811ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
812bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
813bbb85fb3SSatish Balay 
814d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8151e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8168798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8171e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
81846680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8191e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
820bbb85fb3SSatish Balay   PetscFunctionReturn(0);
821bbb85fb3SSatish Balay }
822bbb85fb3SSatish Balay 
8234a2ae208SSatish Balay #undef __FUNCT__
8244a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
825dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
826bbb85fb3SSatish Balay {
827bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
82891c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
8296849ba73SBarry Smith   PetscErrorCode ierr;
830b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
831e44c0bd4SBarry Smith   PetscInt       *row,*col;
832ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8333eda8832SBarry Smith   MatScalar      *val;
834bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
835b24ad042SBarry Smith   PetscMPIInt    n;
836bbb85fb3SSatish Balay 
837bbb85fb3SSatish Balay   PetscFunctionBegin;
8385fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8394cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
840a2d1c673SSatish Balay     while (1) {
8418798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
842a2d1c673SSatish Balay       if (!flg) break;
843a2d1c673SSatish Balay 
844bbb85fb3SSatish Balay       for (i=0; i<n;) {
845bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
84626fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
84726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
84826fbe8dcSKarl Rupp         }
849bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
850bbb85fb3SSatish Balay         else       ncols = n-i;
851bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
85297e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
853bbb85fb3SSatish Balay         i    = j;
854bbb85fb3SSatish Balay       }
855bbb85fb3SSatish Balay     }
8568798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
857a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
858a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
859a2d1c673SSatish Balay        restore the original flags */
860a2d1c673SSatish Balay     r1 = baij->roworiented;
861a2d1c673SSatish Balay     r2 = a->roworiented;
86291c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
86326fbe8dcSKarl Rupp 
8647c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8657c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
86626fbe8dcSKarl Rupp 
86791c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
868a2d1c673SSatish Balay     while (1) {
8698798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
870a2d1c673SSatish Balay       if (!flg) break;
871a2d1c673SSatish Balay 
872a2d1c673SSatish Balay       for (i=0; i<n;) {
873a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
87426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
87526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
87626fbe8dcSKarl Rupp         }
877a2d1c673SSatish Balay         if (j < n) ncols = j-i;
878a2d1c673SSatish Balay         else       ncols = n-i;
87997e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
880a2d1c673SSatish Balay         i    = j;
881a2d1c673SSatish Balay       }
882a2d1c673SSatish Balay     }
8838798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
88426fbe8dcSKarl Rupp 
885a2d1c673SSatish Balay     baij->roworiented = r1;
886a2d1c673SSatish Balay     a->roworiented    = r2;
88726fbe8dcSKarl Rupp 
88891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
889bbb85fb3SSatish Balay   }
890bbb85fb3SSatish Balay 
891bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
892bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
893bbb85fb3SSatish Balay 
894bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
895bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
896bbb85fb3SSatish Balay   /*
897bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
898bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
899bbb85fb3SSatish Balay   */
900bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
901ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
902bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
903ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
904bbb85fb3SSatish Balay     }
905bbb85fb3SSatish Balay   }
906bbb85fb3SSatish Balay 
907bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
908bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
909bbb85fb3SSatish Balay   }
910bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
911bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
912bbb85fb3SSatish Balay 
9136cf91177SBarry Smith #if defined(PETSC_USE_INFO)
914bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9151e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
91626fbe8dcSKarl Rupp 
917bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
918bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
919bbb85fb3SSatish Balay   }
920bbb85fb3SSatish Balay #endif
921bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
922bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
92326fbe8dcSKarl Rupp 
924bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
925bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
926bbb85fb3SSatish Balay   }
927bbb85fb3SSatish Balay 
928fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
92926fbe8dcSKarl Rupp 
930606d414cSSatish Balay   baij->rowvalues = 0;
931bbb85fb3SSatish Balay   PetscFunctionReturn(0);
932bbb85fb3SSatish Balay }
93357b952d6SSatish Balay 
9349804daf3SBarry Smith #include <petscdraw.h>
9354a2ae208SSatish Balay #undef __FUNCT__
9364a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9376849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
93857b952d6SSatish Balay {
93957b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
940dfbe8321SBarry Smith   PetscErrorCode    ierr;
941b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
942d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
943ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
944b0a32e0cSBarry Smith   PetscViewer       sviewer;
945f3ef73ceSBarry Smith   PetscViewerFormat format;
94657b952d6SSatish Balay 
947d64ed03dSBarry Smith   PetscFunctionBegin;
948251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
949251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
95032077d6dSBarry Smith   if (iascii) {
951b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
952456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9534e220ebcSLois Curfman McInnes       MatInfo info;
954ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
955d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
9567b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
95777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
95816608c43SJed Brown                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
959d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
960e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
961d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
962e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
963b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9647b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
96507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
96657b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9673a40ed3dSBarry Smith       PetscFunctionReturn(0);
968fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
96977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9703a40ed3dSBarry Smith       PetscFunctionReturn(0);
97104929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
97204929863SHong Zhang       PetscFunctionReturn(0);
97357b952d6SSatish Balay     }
97457b952d6SSatish Balay   }
97557b952d6SSatish Balay 
9760f5bd95cSBarry Smith   if (isdraw) {
977b0a32e0cSBarry Smith     PetscDraw draw;
978ace3abfcSBarry Smith     PetscBool isnull;
979b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
980b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
98157b952d6SSatish Balay   }
98257b952d6SSatish Balay 
98357b952d6SSatish Balay   if (size == 1) {
9847adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
98557b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
986d64ed03dSBarry Smith   } else {
98757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
98857b952d6SSatish Balay     Mat         A;
98957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
990d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
9913eda8832SBarry Smith     MatScalar   *a;
99257b952d6SSatish Balay 
993f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
994f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
995ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
99657b952d6SSatish Balay     if (!rank) {
997f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
998d64ed03dSBarry Smith     } else {
999f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
100057b952d6SSatish Balay     }
1001f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
10020298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
10032b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
10043bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
100557b952d6SSatish Balay 
100657b952d6SSatish Balay     /* copy over the A part */
100757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
100857b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1009b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
101057b952d6SSatish Balay 
101157b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1012899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
101326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
101457b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1015899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
101657b952d6SSatish Balay         for (k=0; k<bs; k++) {
101797e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1018cee3aa6bSSatish Balay           col++; a += bs;
101957b952d6SSatish Balay         }
102057b952d6SSatish Balay       }
102157b952d6SSatish Balay     }
102257b952d6SSatish Balay     /* copy over the B part */
102357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
102457b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
102557b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1026899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
102726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
102857b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
102957b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
103057b952d6SSatish Balay         for (k=0; k<bs; k++) {
103197e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1032cee3aa6bSSatish Balay           col++; a += bs;
103357b952d6SSatish Balay         }
103457b952d6SSatish Balay       }
103557b952d6SSatish Balay     }
1036606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10376d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10386d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
103955843e3eSBarry Smith     /*
104055843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1041b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
104255843e3eSBarry Smith     */
1043b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1044f14a1c24SBarry Smith     if (!rank) {
10457adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10467566de4bSShri Abhyankar       /* Set the type name to MATMPIBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqBAIJ_ASCII()*/
10477566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPIBAIJ*)(A->data))->A)->type_name,MATMPIBAIJ);
10486831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
104957b952d6SSatish Balay     }
1050b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
10516bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
105257b952d6SSatish Balay   }
10533a40ed3dSBarry Smith   PetscFunctionReturn(0);
105457b952d6SSatish Balay }
105557b952d6SSatish Balay 
10564a2ae208SSatish Balay #undef __FUNCT__
1057660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary"
1058660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1059660746e0SBarry Smith {
1060660746e0SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)mat->data;
1061660746e0SBarry Smith   Mat_SeqBAIJ    *A = (Mat_SeqBAIJ*)a->A->data;
1062660746e0SBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
1063660746e0SBarry Smith   PetscErrorCode ierr;
10645f48b12bSBarry Smith   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
1065e96a6426SSatish Balay   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
1066660746e0SBarry Smith   int            fd;
1067660746e0SBarry Smith   PetscScalar    *column_values;
1068660746e0SBarry Smith   FILE           *file;
1069660746e0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
1070638eb2ebSBarry Smith   PetscInt       message_count,flowcontrolcount;
1071660746e0SBarry Smith 
1072660746e0SBarry Smith   PetscFunctionBegin;
1073ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1074ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
1075660746e0SBarry Smith   nz   = bs2*(A->nz + B->nz);
1076660746e0SBarry Smith   rlen = mat->rmap->n;
1077660746e0SBarry Smith   if (!rank) {
1078660746e0SBarry Smith     header[0] = MAT_FILE_CLASSID;
1079660746e0SBarry Smith     header[1] = mat->rmap->N;
1080660746e0SBarry Smith     header[2] = mat->cmap->N;
108126fbe8dcSKarl Rupp 
1082ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1083660746e0SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1084660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1085660746e0SBarry Smith     /* get largest number of rows any processor has */
1086660746e0SBarry Smith     range = mat->rmap->range;
1087660746e0SBarry Smith     for (i=1; i<size; i++) {
1088660746e0SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
1089660746e0SBarry Smith     }
1090660746e0SBarry Smith   } else {
1091ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1092660746e0SBarry Smith   }
1093660746e0SBarry Smith 
1094660746e0SBarry Smith   ierr = PetscMalloc((rlen/bs)*sizeof(PetscInt),&crow_lens);CHKERRQ(ierr);
1095660746e0SBarry Smith   /* compute lengths of each row  */
1096660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1097660746e0SBarry Smith     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1098660746e0SBarry Smith   }
1099660746e0SBarry Smith   /* store the row lengths to the file */
1100638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1101660746e0SBarry Smith   if (!rank) {
1102660746e0SBarry Smith     MPI_Status status;
1103660746e0SBarry Smith     ierr = PetscMalloc(rlen*sizeof(PetscInt),&row_lens);CHKERRQ(ierr);
1104660746e0SBarry Smith     rlen = (range[1] - range[0])/bs;
1105660746e0SBarry Smith     for (i=0; i<rlen; i++) {
1106660746e0SBarry Smith       for (j=0; j<bs; j++) {
1107660746e0SBarry Smith         row_lens[i*bs+j] = bs*crow_lens[i];
1108660746e0SBarry Smith       }
1109660746e0SBarry Smith     }
1110660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1111660746e0SBarry Smith     for (i=1; i<size; i++) {
1112660746e0SBarry Smith       rlen = (range[i+1] - range[i])/bs;
1113639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1114ce94432eSBarry Smith       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1115660746e0SBarry Smith       for (k=0; k<rlen; k++) {
1116660746e0SBarry Smith         for (j=0; j<bs; j++) {
1117660746e0SBarry Smith           row_lens[k*bs+j] = bs*crow_lens[k];
1118660746e0SBarry Smith         }
1119660746e0SBarry Smith       }
1120660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1121660746e0SBarry Smith     }
1122639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1123660746e0SBarry Smith     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1124660746e0SBarry Smith   } else {
1125639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1126ce94432eSBarry Smith     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1127639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1128660746e0SBarry Smith   }
1129660746e0SBarry Smith   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1130660746e0SBarry Smith 
1131660746e0SBarry Smith   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1132660746e0SBarry Smith      information needed to make it for each row from a block row. This does require more communication but still not more than
1133660746e0SBarry Smith      the communication needed for the nonzero values  */
1134660746e0SBarry Smith   nzmax = nz; /*  space a largest processor needs */
1135ce94432eSBarry Smith   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1136660746e0SBarry Smith   ierr  = PetscMalloc(nzmax*sizeof(PetscInt),&column_indices);CHKERRQ(ierr);
1137660746e0SBarry Smith   cnt   = 0;
1138660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1139660746e0SBarry Smith     pcnt = cnt;
1140660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1141660746e0SBarry Smith       if ((col = garray[B->j[j]]) > cstart) break;
1142660746e0SBarry Smith       for (l=0; l<bs; l++) {
1143660746e0SBarry Smith         column_indices[cnt++] = bs*col+l;
1144660746e0SBarry Smith       }
1145660746e0SBarry Smith     }
1146660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1147660746e0SBarry Smith       for (l=0; l<bs; l++) {
1148660746e0SBarry Smith         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1149660746e0SBarry Smith       }
1150660746e0SBarry Smith     }
1151660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1152660746e0SBarry Smith       for (l=0; l<bs; l++) {
1153660746e0SBarry Smith         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1154660746e0SBarry Smith       }
1155660746e0SBarry Smith     }
1156660746e0SBarry Smith     len = cnt - pcnt;
1157660746e0SBarry Smith     for (k=1; k<bs; k++) {
1158660746e0SBarry Smith       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1159660746e0SBarry Smith       cnt += len;
1160660746e0SBarry Smith     }
1161660746e0SBarry Smith   }
1162660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1163660746e0SBarry Smith 
1164660746e0SBarry Smith   /* store the columns to the file */
1165638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1166660746e0SBarry Smith   if (!rank) {
1167660746e0SBarry Smith     MPI_Status status;
1168660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1169660746e0SBarry Smith     for (i=1; i<size; i++) {
1170639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1171ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1172ce94432eSBarry Smith       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1173660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1174660746e0SBarry Smith     }
1175639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1176660746e0SBarry Smith   } else {
1177639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1178ce94432eSBarry Smith     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1179ce94432eSBarry Smith     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1180639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1181660746e0SBarry Smith   }
1182660746e0SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1183660746e0SBarry Smith 
1184660746e0SBarry Smith   /* load up the numerical values */
1185660746e0SBarry Smith   ierr = PetscMalloc(nzmax*sizeof(PetscScalar),&column_values);CHKERRQ(ierr);
1186660746e0SBarry Smith   cnt  = 0;
1187660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1188660746e0SBarry Smith     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1189660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1190660746e0SBarry Smith       if (garray[B->j[j]] > cstart) break;
1191660746e0SBarry Smith       for (l=0; l<bs; l++) {
1192660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1193660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1194660746e0SBarry Smith         }
1195660746e0SBarry Smith       }
1196660746e0SBarry Smith       cnt += bs;
1197660746e0SBarry Smith     }
1198660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1199660746e0SBarry Smith       for (l=0; l<bs; l++) {
1200660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1201660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1202660746e0SBarry Smith         }
1203660746e0SBarry Smith       }
1204660746e0SBarry Smith       cnt += bs;
1205660746e0SBarry Smith     }
1206660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1207660746e0SBarry Smith       for (l=0; l<bs; l++) {
1208660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1209660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1210660746e0SBarry Smith         }
1211660746e0SBarry Smith       }
1212660746e0SBarry Smith       cnt += bs;
1213660746e0SBarry Smith     }
1214660746e0SBarry Smith     cnt += (bs-1)*rlen;
1215660746e0SBarry Smith   }
1216660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1217660746e0SBarry Smith 
1218660746e0SBarry Smith   /* store the column values to the file */
1219638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1220660746e0SBarry Smith   if (!rank) {
1221660746e0SBarry Smith     MPI_Status status;
1222660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1223660746e0SBarry Smith     for (i=1; i<size; i++) {
1224639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1225ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1226ce94432eSBarry Smith       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1227660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1228660746e0SBarry Smith     }
1229639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1230660746e0SBarry Smith   } else {
1231639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1232ce94432eSBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1233ce94432eSBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1234639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1235660746e0SBarry Smith   }
1236660746e0SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
1237660746e0SBarry Smith 
1238660746e0SBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1239660746e0SBarry Smith   if (file) {
1240660746e0SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1241660746e0SBarry Smith   }
1242660746e0SBarry Smith   PetscFunctionReturn(0);
1243660746e0SBarry Smith }
1244660746e0SBarry Smith 
1245660746e0SBarry Smith #undef __FUNCT__
12464a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1247dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
124857b952d6SSatish Balay {
1249dfbe8321SBarry Smith   PetscErrorCode ierr;
1250ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
125157b952d6SSatish Balay 
1252d64ed03dSBarry Smith   PetscFunctionBegin;
1253251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1254251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1255251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1256251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1257660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12587b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1259660746e0SBarry Smith   } else if (isbinary) {
1260660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
126157b952d6SSatish Balay   }
12623a40ed3dSBarry Smith   PetscFunctionReturn(0);
126357b952d6SSatish Balay }
126457b952d6SSatish Balay 
12654a2ae208SSatish Balay #undef __FUNCT__
12664a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1267dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
126879bdfe76SSatish Balay {
126979bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1270dfbe8321SBarry Smith   PetscErrorCode ierr;
127179bdfe76SSatish Balay 
1272d64ed03dSBarry Smith   PetscFunctionBegin;
1273aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1274d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
127579bdfe76SSatish Balay #endif
12768798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12778798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12786bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12796bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1280aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
12816bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
128248e59246SSatish Balay #else
128305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
128448e59246SSatish Balay #endif
128505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12866bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12876bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1288fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
128905b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1290fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1291899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1292bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1293901853e0SKris Buschelman 
1294dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1295bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1296bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1297bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
1298bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1299bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1300bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1301bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1302bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1303bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
13043a40ed3dSBarry Smith   PetscFunctionReturn(0);
130579bdfe76SSatish Balay }
130679bdfe76SSatish Balay 
13074a2ae208SSatish Balay #undef __FUNCT__
13084a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1309dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1310cee3aa6bSSatish Balay {
1311cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1312dfbe8321SBarry Smith   PetscErrorCode ierr;
1313b24ad042SBarry Smith   PetscInt       nt;
1314cee3aa6bSSatish Balay 
1315d64ed03dSBarry Smith   PetscFunctionBegin;
1316e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1317e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1318e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1319e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1320ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1321f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1322ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1323f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
13243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1325cee3aa6bSSatish Balay }
1326cee3aa6bSSatish Balay 
13274a2ae208SSatish Balay #undef __FUNCT__
13284a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1329dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1330cee3aa6bSSatish Balay {
1331cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1332dfbe8321SBarry Smith   PetscErrorCode ierr;
1333d64ed03dSBarry Smith 
1334d64ed03dSBarry Smith   PetscFunctionBegin;
1335ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1336f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1337ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1338f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
13393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1340cee3aa6bSSatish Balay }
1341cee3aa6bSSatish Balay 
13424a2ae208SSatish Balay #undef __FUNCT__
13434a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1344dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1345cee3aa6bSSatish Balay {
1346cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1347dfbe8321SBarry Smith   PetscErrorCode ierr;
1348ace3abfcSBarry Smith   PetscBool      merged;
1349cee3aa6bSSatish Balay 
1350d64ed03dSBarry Smith   PetscFunctionBegin;
1351a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1352cee3aa6bSSatish Balay   /* do nondiagonal part */
13537c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1354a5ff213dSBarry Smith   if (!merged) {
1355cee3aa6bSSatish Balay     /* send it on its way */
1356ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1357cee3aa6bSSatish Balay     /* do local part */
13587c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1359cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1360a5ff213dSBarry Smith     /* inserted in yy until the next line */
1361ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1362a5ff213dSBarry Smith   } else {
1363a5ff213dSBarry Smith     /* do local part */
1364a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1365a5ff213dSBarry Smith     /* send it on its way */
1366ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1367a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1368ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1369a5ff213dSBarry Smith   }
13703a40ed3dSBarry Smith   PetscFunctionReturn(0);
1371cee3aa6bSSatish Balay }
1372cee3aa6bSSatish Balay 
13734a2ae208SSatish Balay #undef __FUNCT__
13744a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1375dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1376cee3aa6bSSatish Balay {
1377cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1378dfbe8321SBarry Smith   PetscErrorCode ierr;
1379cee3aa6bSSatish Balay 
1380d64ed03dSBarry Smith   PetscFunctionBegin;
1381cee3aa6bSSatish Balay   /* do nondiagonal part */
13827c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1383cee3aa6bSSatish Balay   /* send it on its way */
1384ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1385cee3aa6bSSatish Balay   /* do local part */
13867c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1387cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1388cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1389cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1390ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1392cee3aa6bSSatish Balay }
1393cee3aa6bSSatish Balay 
1394cee3aa6bSSatish Balay /*
1395cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1396cee3aa6bSSatish Balay    diagonal block
1397cee3aa6bSSatish Balay */
13984a2ae208SSatish Balay #undef __FUNCT__
13994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1400dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1401cee3aa6bSSatish Balay {
1402cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1403dfbe8321SBarry Smith   PetscErrorCode ierr;
1404d64ed03dSBarry Smith 
1405d64ed03dSBarry Smith   PetscFunctionBegin;
1406e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
14073a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
14083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1409cee3aa6bSSatish Balay }
1410cee3aa6bSSatish Balay 
14114a2ae208SSatish Balay #undef __FUNCT__
14124a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1413f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1414cee3aa6bSSatish Balay {
1415cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1416dfbe8321SBarry Smith   PetscErrorCode ierr;
1417d64ed03dSBarry Smith 
1418d64ed03dSBarry Smith   PetscFunctionBegin;
1419f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1420f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
14213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1422cee3aa6bSSatish Balay }
1423026e39d0SSatish Balay 
14244a2ae208SSatish Balay #undef __FUNCT__
14254a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1426b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1427acdf5bf4SSatish Balay {
1428acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
142987828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
14306849ba73SBarry Smith   PetscErrorCode ierr;
1431d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1432d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1433899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1434acdf5bf4SSatish Balay 
1435d64ed03dSBarry Smith   PetscFunctionBegin;
1436e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1437e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1438acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1439acdf5bf4SSatish Balay 
1440acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1441acdf5bf4SSatish Balay     /*
1442acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1443acdf5bf4SSatish Balay     */
1444acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1445b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1446bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1447acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
144826fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1449acdf5bf4SSatish Balay     }
1450*dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1451acdf5bf4SSatish Balay   }
1452d9d09a02SSatish Balay   lrow = row - brstart;
1453acdf5bf4SSatish Balay 
1454acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1455acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1456acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1457f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1458f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1459acdf5bf4SSatish Balay   nztot = nzA + nzB;
1460acdf5bf4SSatish Balay 
1461acdf5bf4SSatish Balay   cmap = mat->garray;
1462acdf5bf4SSatish Balay   if (v  || idx) {
1463acdf5bf4SSatish Balay     if (nztot) {
1464acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1465b24ad042SBarry Smith       PetscInt imark = -1;
1466acdf5bf4SSatish Balay       if (v) {
1467acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1468acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1469d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1470acdf5bf4SSatish Balay           else break;
1471acdf5bf4SSatish Balay         }
1472acdf5bf4SSatish Balay         imark = i;
1473acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1474acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1475acdf5bf4SSatish Balay       }
1476acdf5bf4SSatish Balay       if (idx) {
1477acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1478acdf5bf4SSatish Balay         if (imark > -1) {
1479acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1480bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1481acdf5bf4SSatish Balay           }
1482acdf5bf4SSatish Balay         } else {
1483acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
148426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1485acdf5bf4SSatish Balay             else break;
1486acdf5bf4SSatish Balay           }
1487acdf5bf4SSatish Balay           imark = i;
1488acdf5bf4SSatish Balay         }
1489d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1490d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1491acdf5bf4SSatish Balay       }
1492d64ed03dSBarry Smith     } else {
1493d212a18eSSatish Balay       if (idx) *idx = 0;
1494d212a18eSSatish Balay       if (v)   *v   = 0;
1495d212a18eSSatish Balay     }
1496acdf5bf4SSatish Balay   }
1497acdf5bf4SSatish Balay   *nz  = nztot;
1498f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1499f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
15003a40ed3dSBarry Smith   PetscFunctionReturn(0);
1501acdf5bf4SSatish Balay }
1502acdf5bf4SSatish Balay 
15034a2ae208SSatish Balay #undef __FUNCT__
15044a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1505b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1506acdf5bf4SSatish Balay {
1507acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1508d64ed03dSBarry Smith 
1509d64ed03dSBarry Smith   PetscFunctionBegin;
1510e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1511acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
15123a40ed3dSBarry Smith   PetscFunctionReturn(0);
1513acdf5bf4SSatish Balay }
1514acdf5bf4SSatish Balay 
15154a2ae208SSatish Balay #undef __FUNCT__
15164a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1517dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
151858667388SSatish Balay {
151958667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1520dfbe8321SBarry Smith   PetscErrorCode ierr;
1521d64ed03dSBarry Smith 
1522d64ed03dSBarry Smith   PetscFunctionBegin;
152358667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
152458667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
15253a40ed3dSBarry Smith   PetscFunctionReturn(0);
152658667388SSatish Balay }
15270ac07820SSatish Balay 
15284a2ae208SSatish Balay #undef __FUNCT__
15294a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1530dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
15310ac07820SSatish Balay {
15324e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
15334e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1534dfbe8321SBarry Smith   PetscErrorCode ierr;
1535329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
15360ac07820SSatish Balay 
1537d64ed03dSBarry Smith   PetscFunctionBegin;
1538d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
153926fbe8dcSKarl Rupp 
15404e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
154126fbe8dcSKarl Rupp 
15420e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1543de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
154426fbe8dcSKarl Rupp 
15454e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
154626fbe8dcSKarl Rupp 
15470e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1548de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
154926fbe8dcSKarl Rupp 
15500ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15514e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15524e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15534e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15544e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15554e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15560ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1557ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
155826fbe8dcSKarl Rupp 
15594e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15604e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15614e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15624e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15634e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15640ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1565ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
156626fbe8dcSKarl Rupp 
15674e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15684e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15694e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15704e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15714e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1572ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15734e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15744e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15754e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15763a40ed3dSBarry Smith   PetscFunctionReturn(0);
15770ac07820SSatish Balay }
15780ac07820SSatish Balay 
15794a2ae208SSatish Balay #undef __FUNCT__
15804a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1581ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
158258667388SSatish Balay {
158358667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1584dfbe8321SBarry Smith   PetscErrorCode ierr;
158558667388SSatish Balay 
1586d64ed03dSBarry Smith   PetscFunctionBegin;
158712c028f9SKris Buschelman   switch (op) {
1588512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
158912c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
159028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1591a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
159212c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
15934e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15944e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
159512c028f9SKris Buschelman     break;
159612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15974e0d8c25SBarry Smith     a->roworiented = flg;
159826fbe8dcSKarl Rupp 
15994e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16004e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
160112c028f9SKris Buschelman     break;
16024e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1603290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
160412c028f9SKris Buschelman     break;
160512c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16064e0d8c25SBarry Smith     a->donotstash = flg;
160712c028f9SKris Buschelman     break;
160812c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
16094e0d8c25SBarry Smith     a->ht_flag = flg;
161012c028f9SKris Buschelman     break;
161177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
161277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
16132188ac68SBarry Smith   case MAT_HERMITIAN:
16142188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
16154e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
161677e54ba9SKris Buschelman     break;
161712c028f9SKris Buschelman   default:
1618ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1619d64ed03dSBarry Smith   }
16203a40ed3dSBarry Smith   PetscFunctionReturn(0);
162158667388SSatish Balay }
162258667388SSatish Balay 
16234a2ae208SSatish Balay #undef __FUNCT__
16246a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ"
1625fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
16260ac07820SSatish Balay {
16270ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16280ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16290ac07820SSatish Balay   Mat            B;
1630dfbe8321SBarry Smith   PetscErrorCode ierr;
1631d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1632d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
16333eda8832SBarry Smith   MatScalar      *a;
16340ac07820SSatish Balay 
1635d64ed03dSBarry Smith   PetscFunctionBegin;
1636ce94432eSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1637fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
1638ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1639d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
16407adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
16412e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
16420298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1643fc4dec0aSBarry Smith   } else {
1644fc4dec0aSBarry Smith     B = *matout;
1645fc4dec0aSBarry Smith   }
16460ac07820SSatish Balay 
16470ac07820SSatish Balay   /* copy over the A part */
16480ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16490ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1650b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
16510ac07820SSatish Balay 
16520ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1653899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
165426fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
16550ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1656899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16570ac07820SSatish Balay       for (k=0; k<bs; k++) {
165897e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
165926fbe8dcSKarl Rupp 
16600ac07820SSatish Balay         col++; a += bs;
16610ac07820SSatish Balay       }
16620ac07820SSatish Balay     }
16630ac07820SSatish Balay   }
16640ac07820SSatish Balay   /* copy over the B part */
16650ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16660ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
16670ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1668899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
166926fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
16700ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16710ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16720ac07820SSatish Balay       for (k=0; k<bs; k++) {
167397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
167426fbe8dcSKarl Rupp         col++;
167526fbe8dcSKarl Rupp         a += bs;
16760ac07820SSatish Balay       }
16770ac07820SSatish Balay     }
16780ac07820SSatish Balay   }
1679606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16800ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16810ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16820ac07820SSatish Balay 
168326fbe8dcSKarl Rupp   if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B;
168426fbe8dcSKarl Rupp   else {
1685eb6b5d47SBarry Smith     ierr = MatHeaderMerge(A,B);CHKERRQ(ierr);
16860ac07820SSatish Balay   }
16873a40ed3dSBarry Smith   PetscFunctionReturn(0);
16880ac07820SSatish Balay }
16890e95ebc0SSatish Balay 
16904a2ae208SSatish Balay #undef __FUNCT__
16914a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1692dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16930e95ebc0SSatish Balay {
169436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
169536c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1696dfbe8321SBarry Smith   PetscErrorCode ierr;
1697b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16980e95ebc0SSatish Balay 
1699d64ed03dSBarry Smith   PetscFunctionBegin;
170036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
170136c4a09eSSatish Balay   if (rr) {
170236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1703e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
170436c4a09eSSatish Balay     /* Overlap communication with computation. */
1705ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
170636c4a09eSSatish Balay   }
17070e95ebc0SSatish Balay   if (ll) {
17080e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1709e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
17100298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17110e95ebc0SSatish Balay   }
171236c4a09eSSatish Balay   /* scale  the diagonal block */
171336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
171436c4a09eSSatish Balay 
171536c4a09eSSatish Balay   if (rr) {
171636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1717ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17180298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
171936c4a09eSSatish Balay   }
17203a40ed3dSBarry Smith   PetscFunctionReturn(0);
17210e95ebc0SSatish Balay }
17220e95ebc0SSatish Balay 
17234a2ae208SSatish Balay #undef __FUNCT__
17244a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
17252b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
17260ac07820SSatish Balay {
17270ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
172865a92638SMatthew G. Knepley   PetscInt      *owners = A->rmap->range;
172965a92638SMatthew G. Knepley   PetscInt       n      = A->rmap->n;
173065a92638SMatthew G. Knepley   PetscMPIInt    size   = l->size;
173165a92638SMatthew G. Knepley   PetscSF        sf;
173265a92638SMatthew G. Knepley   PetscInt      *lrows;
173365a92638SMatthew G. Knepley   PetscSFNode   *rrows;
173465a92638SMatthew G. Knepley   PetscInt       lastidx = -1, r, p = 0, len = 0;
17356849ba73SBarry Smith   PetscErrorCode ierr;
17360ac07820SSatish Balay 
1737d64ed03dSBarry Smith   PetscFunctionBegin;
173865a92638SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
173965a92638SMatthew G. Knepley   ierr = PetscMalloc(n * sizeof(PetscInt), &lrows);CHKERRQ(ierr);
174065a92638SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
174165a92638SMatthew G. Knepley   ierr = PetscMalloc(N * sizeof(PetscSFNode), &rrows);CHKERRQ(ierr);
174265a92638SMatthew G. Knepley   for (r = 0; r < N; ++r) {
174365a92638SMatthew G. Knepley     const PetscInt idx   = rows[r];
174465a92638SMatthew G. Knepley     PetscBool      found = PETSC_FALSE;
174565a92638SMatthew G. Knepley     /* Trick for efficient searching for sorted rows */
174665a92638SMatthew G. Knepley     if (lastidx > idx) p = 0;
17476543fbbaSBarry Smith     lastidx = idx;
174865a92638SMatthew G. Knepley     for (; p < size; ++p) {
174965a92638SMatthew G. Knepley       if (idx >= owners[p] && idx < owners[p+1]) {
175065a92638SMatthew G. Knepley         rrows[r].rank  = p;
175165a92638SMatthew G. Knepley         rrows[r].index = rows[r] - owners[p];
17526543fbbaSBarry Smith         found = PETSC_TRUE;
17536543fbbaSBarry Smith         break;
17540ac07820SSatish Balay       }
17550ac07820SSatish Balay     }
175665a92638SMatthew G. Knepley     if (!found) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %d not found in matrix distribution", idx);
17570ac07820SSatish Balay   }
175865a92638SMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
175965a92638SMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
176065a92638SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
176165a92638SMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
176265a92638SMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
176365a92638SMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
176465a92638SMatthew G. Knepley   /* Compress and put in row numbers */
176565a92638SMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
176697b48c8fSBarry Smith   /* fix right hand side if needed */
176797b48c8fSBarry Smith   if (x && b) {
176865a92638SMatthew G. Knepley     const PetscScalar *xx;
176965a92638SMatthew G. Knepley     PetscScalar       *bb;
177065a92638SMatthew G. Knepley 
177197b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
177297b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
177365a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
177497b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
177597b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
177697b48c8fSBarry Smith   }
177797b48c8fSBarry Smith 
17780ac07820SSatish Balay   /* actually zap the local rows */
177972dacd9aSBarry Smith   /*
178072dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1781a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
178272dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
178372dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
178472dacd9aSBarry Smith 
178572dacd9aSBarry Smith   */
17869c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
178765a92638SMatthew G. Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,0,0);CHKERRQ(ierr);
1788d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
178965a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,0,0);CHKERRQ(ierr);
1790f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
179165a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1792e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1793512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
179465a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
179565a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1796f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1797a07cd24cSSatish Balay     }
1798a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1799a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18009c957beeSSatish Balay   } else {
180165a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1802a07cd24cSSatish Balay   }
1803606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
18043a40ed3dSBarry Smith   PetscFunctionReturn(0);
18050ac07820SSatish Balay }
180672dacd9aSBarry Smith 
18074a2ae208SSatish Balay #undef __FUNCT__
18084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1809dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1810bb5a7306SBarry Smith {
1811bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1812dfbe8321SBarry Smith   PetscErrorCode ierr;
1813d64ed03dSBarry Smith 
1814d64ed03dSBarry Smith   PetscFunctionBegin;
1815bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18163a40ed3dSBarry Smith   PetscFunctionReturn(0);
1817bb5a7306SBarry Smith }
1818bb5a7306SBarry Smith 
18196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
18200ac07820SSatish Balay 
18214a2ae208SSatish Balay #undef __FUNCT__
18224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1823ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
18247fc3c18eSBarry Smith {
18257fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18267fc3c18eSBarry Smith   Mat            a,b,c,d;
1827ace3abfcSBarry Smith   PetscBool      flg;
1828dfbe8321SBarry Smith   PetscErrorCode ierr;
18297fc3c18eSBarry Smith 
18307fc3c18eSBarry Smith   PetscFunctionBegin;
18317fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18327fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18337fc3c18eSBarry Smith 
18347fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1835abc0a331SBarry Smith   if (flg) {
18367fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18377fc3c18eSBarry Smith   }
1838ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
18397fc3c18eSBarry Smith   PetscFunctionReturn(0);
18407fc3c18eSBarry Smith }
18417fc3c18eSBarry Smith 
18423c896bc6SHong Zhang #undef __FUNCT__
18433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
18443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18453c896bc6SHong Zhang {
18463c896bc6SHong Zhang   PetscErrorCode ierr;
18473c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
18483c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
18493c896bc6SHong Zhang 
18503c896bc6SHong Zhang   PetscFunctionBegin;
18513c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18523c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18533c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18543c896bc6SHong Zhang   } else {
18553c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18563c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18573c896bc6SHong Zhang   }
18583c896bc6SHong Zhang   PetscFunctionReturn(0);
18593c896bc6SHong Zhang }
1860273d9f13SBarry Smith 
18614a2ae208SSatish Balay #undef __FUNCT__
18624994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ"
18634994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1864273d9f13SBarry Smith {
1865dfbe8321SBarry Smith   PetscErrorCode ierr;
1866273d9f13SBarry Smith 
1867273d9f13SBarry Smith   PetscFunctionBegin;
1868535b19f3SBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1869273d9f13SBarry Smith   PetscFunctionReturn(0);
1870273d9f13SBarry Smith }
1871273d9f13SBarry Smith 
18724fe895cdSHong Zhang #undef __FUNCT__
18734fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
18744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18754fe895cdSHong Zhang {
18764fe895cdSHong Zhang   PetscErrorCode ierr;
18774fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
18784fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18794fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
18804fe895cdSHong Zhang 
18814fe895cdSHong Zhang   PetscFunctionBegin;
18824fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18834fe895cdSHong Zhang     PetscScalar alpha = a;
18844fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
18854fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
1886c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
18878b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18884fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
18894fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
1890c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
18918b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18924fe895cdSHong Zhang   } else {
18934fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
18944fe895cdSHong Zhang   }
18954fe895cdSHong Zhang   PetscFunctionReturn(0);
18964fe895cdSHong Zhang }
18974fe895cdSHong Zhang 
189899cafbc1SBarry Smith #undef __FUNCT__
189999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
190099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
190199cafbc1SBarry Smith {
190299cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
190399cafbc1SBarry Smith   PetscErrorCode ierr;
190499cafbc1SBarry Smith 
190599cafbc1SBarry Smith   PetscFunctionBegin;
190699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
190799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
190899cafbc1SBarry Smith   PetscFunctionReturn(0);
190999cafbc1SBarry Smith }
191099cafbc1SBarry Smith 
191199cafbc1SBarry Smith #undef __FUNCT__
191299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
191399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
191499cafbc1SBarry Smith {
191599cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
191699cafbc1SBarry Smith   PetscErrorCode ierr;
191799cafbc1SBarry Smith 
191899cafbc1SBarry Smith   PetscFunctionBegin;
191999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
192099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
192199cafbc1SBarry Smith   PetscFunctionReturn(0);
192299cafbc1SBarry Smith }
192399cafbc1SBarry Smith 
192482094794SBarry Smith #undef __FUNCT__
192582094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
19264aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
19274aa3045dSJed Brown {
19284aa3045dSJed Brown   PetscErrorCode ierr;
19294aa3045dSJed Brown   IS             iscol_local;
19304aa3045dSJed Brown   PetscInt       csize;
19314aa3045dSJed Brown 
19324aa3045dSJed Brown   PetscFunctionBegin;
19334aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1934b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1935b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1936e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1937b79d0421SJed Brown   } else {
19384aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1939b79d0421SJed Brown   }
19404aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1941b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1942b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
19436bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
1944b79d0421SJed Brown   }
19454aa3045dSJed Brown   PetscFunctionReturn(0);
19464aa3045dSJed Brown }
194729dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*);
19484aa3045dSJed Brown #undef __FUNCT__
1949dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private"
195082094794SBarry Smith /*
195182094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
195282094794SBarry Smith   in local and then by concatenating the local matrices the end result.
195382094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
195482094794SBarry Smith */
19554aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
195682094794SBarry Smith {
195782094794SBarry Smith   PetscErrorCode ierr;
195882094794SBarry Smith   PetscMPIInt    rank,size;
195982094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
196029dcf524SDmitry Karpeev   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow;
196129dcf524SDmitry Karpeev   Mat            M,Mreuse;
196282094794SBarry Smith   MatScalar      *vwork,*aa;
1963ce94432eSBarry Smith   MPI_Comm       comm;
196429dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
196529dcf524SDmitry Karpeev   PetscBool      idflag,allrows, allcols;
196682094794SBarry Smith   Mat_SeqBAIJ    *aij;
196782094794SBarry Smith 
196882094794SBarry Smith   PetscFunctionBegin;
1969ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
197082094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
197182094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
197229dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
197329dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
197429dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
197529dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
197682094794SBarry Smith 
197729dcf524SDmitry Karpeev   /* Check for special case: each processor gets entire matrix columns */
197829dcf524SDmitry Karpeev   ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr);
197929dcf524SDmitry Karpeev   ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr);
198026fbe8dcSKarl Rupp   if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE;
198126fbe8dcSKarl Rupp   else allcols = PETSC_FALSE;
198229dcf524SDmitry Karpeev 
198329dcf524SDmitry Karpeev   ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr);
198429dcf524SDmitry Karpeev   ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr);
198526fbe8dcSKarl Rupp   if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE;
198626fbe8dcSKarl Rupp   else allrows = PETSC_FALSE;
198726fbe8dcSKarl Rupp 
198882094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
198982094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
1990e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
199175f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
199282094794SBarry Smith   } else {
199375f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
199482094794SBarry Smith   }
199529dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
199629dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
199782094794SBarry Smith   /*
199882094794SBarry Smith       m - number of local rows
199982094794SBarry Smith       n - number of columns (same on all processors)
200082094794SBarry Smith       rstart - first row in new global matrix generated
200182094794SBarry Smith   */
200282094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
200382094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
200482094794SBarry Smith   m    = m/bs;
200582094794SBarry Smith   n    = n/bs;
200682094794SBarry Smith 
200782094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
200882094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
200982094794SBarry Smith     ii  = aij->i;
201082094794SBarry Smith     jj  = aij->j;
201182094794SBarry Smith 
201282094794SBarry Smith     /*
201382094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
201482094794SBarry Smith         portions of the matrix in order to do correct preallocation
201582094794SBarry Smith     */
201682094794SBarry Smith 
201782094794SBarry Smith     /* first get start and end of "diagonal" columns */
201882094794SBarry Smith     if (csize == PETSC_DECIDE) {
201982094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
202082094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
202182094794SBarry Smith         nlocal = m;
202282094794SBarry Smith       } else {
202382094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
202482094794SBarry Smith       }
202582094794SBarry Smith     } else {
202682094794SBarry Smith       nlocal = csize/bs;
202782094794SBarry Smith     }
202882094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
202982094794SBarry Smith     rstart = rend - nlocal;
203065e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
203182094794SBarry Smith 
203282094794SBarry Smith     /* next, compute all the lengths */
2033*dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
203482094794SBarry Smith     for (i=0; i<m; i++) {
203582094794SBarry Smith       jend = ii[i+1] - ii[i];
203682094794SBarry Smith       olen = 0;
203782094794SBarry Smith       dlen = 0;
203882094794SBarry Smith       for (j=0; j<jend; j++) {
203982094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
204082094794SBarry Smith         else dlen++;
204182094794SBarry Smith         jj++;
204282094794SBarry Smith       }
204382094794SBarry Smith       olens[i] = olen;
204482094794SBarry Smith       dlens[i] = dlen;
204582094794SBarry Smith     }
204682094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
204782094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
204882094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
204982094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2050eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
205182094794SBarry Smith   } else {
205282094794SBarry Smith     PetscInt ml,nl;
205382094794SBarry Smith 
205482094794SBarry Smith     M    = *newmat;
205582094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2056e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
205782094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
205882094794SBarry Smith     /*
205982094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
206082094794SBarry Smith        rather than the slower MatSetValues().
206182094794SBarry Smith     */
206282094794SBarry Smith     M->was_assembled = PETSC_TRUE;
206382094794SBarry Smith     M->assembled     = PETSC_FALSE;
206482094794SBarry Smith   }
206582094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
206682094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
206782094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
206882094794SBarry Smith   ii   = aij->i;
206982094794SBarry Smith   jj   = aij->j;
207082094794SBarry Smith   aa   = aij->a;
207182094794SBarry Smith   for (i=0; i<m; i++) {
207282094794SBarry Smith     row   = rstart/bs + i;
207382094794SBarry Smith     nz    = ii[i+1] - ii[i];
207482094794SBarry Smith     cwork = jj;     jj += nz;
207575f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
207682094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
207782094794SBarry Smith   }
207882094794SBarry Smith 
207982094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
208082094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
208182094794SBarry Smith   *newmat = M;
208282094794SBarry Smith 
208382094794SBarry Smith   /* save submatrix used in processor for next request */
208482094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
208582094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
208682094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
208782094794SBarry Smith   }
208882094794SBarry Smith   PetscFunctionReturn(0);
208982094794SBarry Smith }
209082094794SBarry Smith 
209182094794SBarry Smith #undef __FUNCT__
209282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
209382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
209482094794SBarry Smith {
209582094794SBarry Smith   MPI_Comm       comm,pcomm;
2096a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
209782094794SBarry Smith   const PetscInt *rows;
2098dbf0e21dSBarry Smith   PetscMPIInt    size;
2099a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
210082094794SBarry Smith   PetscErrorCode ierr;
210182094794SBarry Smith 
210282094794SBarry Smith   PetscFunctionBegin;
210382094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
210482094794SBarry Smith   /* make a collective version of 'rowp' */
210582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
210682094794SBarry Smith   if (pcomm==comm) {
210782094794SBarry Smith     crowp = rowp;
210882094794SBarry Smith   } else {
210982094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
211082094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
211170b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
211282094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
211382094794SBarry Smith   }
2114a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2115a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
211682094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2117dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2118dbf0e21dSBarry Smith   if (size==1) {
211982094794SBarry Smith     lcolp = colp;
212082094794SBarry Smith   } else {
212175f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
212282094794SBarry Smith   }
2123dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
212475f6568bSJed Brown   /* now we just get the submatrix */
2125a0a83eb5SRémi Lacroix   ierr = MatGetLocalSize(A,PETSC_NULL,&clocal_size);CHKERRQ(ierr);
2126a0a83eb5SRémi Lacroix   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2127a0a83eb5SRémi Lacroix   /* clean up */
2128a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2129a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2130a0a83eb5SRémi Lacroix   }
2131dbf0e21dSBarry Smith   if (size>1) {
21326bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
213382094794SBarry Smith   }
213482094794SBarry Smith   PetscFunctionReturn(0);
213582094794SBarry Smith }
213682094794SBarry Smith 
21378c7482ecSBarry Smith #undef __FUNCT__
21388c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
21397087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
21408c7482ecSBarry Smith {
21418c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
21428c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
21438c7482ecSBarry Smith 
21448c7482ecSBarry Smith   PetscFunctionBegin;
214526fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
214626fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
21478c7482ecSBarry Smith   PetscFunctionReturn(0);
21488c7482ecSBarry Smith }
21498c7482ecSBarry Smith 
2150f6d58c54SBarry Smith #undef __FUNCT__
2151d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ"
2152d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2153f6d58c54SBarry Smith {
2154f6d58c54SBarry Smith   Mat            B;
2155f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2156f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2157f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2158f6d58c54SBarry Smith   PetscErrorCode ierr;
2159f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2160f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2161f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2162f6d58c54SBarry Smith 
2163f6d58c54SBarry Smith   PetscFunctionBegin;
2164ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2165ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2166f6d58c54SBarry Smith 
2167f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2168f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2169f6d58c54SBarry Smith   */
2170f6d58c54SBarry Smith   ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
2171f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2172f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2173f6d58c54SBarry Smith   }
2174f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2175f6d58c54SBarry Smith   ierr      = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr);
2176f6d58c54SBarry Smith   displs    = recvcounts + size;
2177f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2178f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2179f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2180f6d58c54SBarry Smith   }
2181f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2182ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2183f6d58c54SBarry Smith #else
2184ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2185f6d58c54SBarry Smith #endif
2186f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2187f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2188f6d58c54SBarry Smith   */
2189f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2190f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2191f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2192f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2193f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2194f6d58c54SBarry Smith 
2195f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2196f6d58c54SBarry Smith     Copy my part of matrix column indices over
2197f6d58c54SBarry Smith   */
2198f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2199f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2200f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2201f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2202f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2203f6d58c54SBarry Smith   cnt        = 0;
2204f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2205f6d58c54SBarry Smith 
2206f6d58c54SBarry Smith     /* put in lower diagonal portion */
2207f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2208f6d58c54SBarry Smith     while (m > 0) {
2209f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2210f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2211f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2212f6d58c54SBarry Smith       m--;
2213f6d58c54SBarry Smith     }
2214f6d58c54SBarry Smith 
2215f6d58c54SBarry Smith     /* put in diagonal portion */
2216f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2217f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2218f6d58c54SBarry Smith     }
2219f6d58c54SBarry Smith 
2220f6d58c54SBarry Smith     /* put in upper diagonal portion */
2221f6d58c54SBarry Smith     while (m-- > 0) {
2222f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2223f6d58c54SBarry Smith     }
2224f6d58c54SBarry Smith   }
2225e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2226f6d58c54SBarry Smith 
2227f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2228f6d58c54SBarry Smith     Gather all column indices to all processors
2229f6d58c54SBarry Smith   */
2230f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2231f6d58c54SBarry Smith     recvcounts[i] = 0;
2232f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2233f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2234f6d58c54SBarry Smith     }
2235f6d58c54SBarry Smith   }
2236f6d58c54SBarry Smith   displs[0] = 0;
2237f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2238f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2239f6d58c54SBarry Smith   }
2240f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2241ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2242f6d58c54SBarry Smith #else
2243ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2244f6d58c54SBarry Smith #endif
2245f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2246f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2247f6d58c54SBarry Smith   */
2248f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2249f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2250f6d58c54SBarry Smith   /* set the b->i indices */
2251f6d58c54SBarry Smith   b->i[0] = 0;
2252f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2253f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2254f6d58c54SBarry Smith   }
2255f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2256f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2257f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2258f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2259f6d58c54SBarry Smith 
2260f6d58c54SBarry Smith   if (A->symmetric) {
2261f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2262f6d58c54SBarry Smith   } else if (A->hermitian) {
2263f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2264f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2265f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2266f6d58c54SBarry Smith   }
2267f6d58c54SBarry Smith   *newmat = B;
2268f6d58c54SBarry Smith   PetscFunctionReturn(0);
2269f6d58c54SBarry Smith }
2270f6d58c54SBarry Smith 
2271b1a666ecSBarry Smith #undef __FUNCT__
2272b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2273b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2274b1a666ecSBarry Smith {
2275b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2276b1a666ecSBarry Smith   PetscErrorCode ierr;
2277b1a666ecSBarry Smith   Vec            bb1 = 0;
2278b1a666ecSBarry Smith 
2279b1a666ecSBarry Smith   PetscFunctionBegin;
2280b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2281b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2282b1a666ecSBarry Smith     PetscFunctionReturn(0);
2283b1a666ecSBarry Smith   }
2284b1a666ecSBarry Smith 
22854e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
22864e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
22874e980039SJed Brown   }
22884e980039SJed Brown 
2289b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2290b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2291b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2292b1a666ecSBarry Smith       its--;
2293b1a666ecSBarry Smith     }
2294b1a666ecSBarry Smith 
2295b1a666ecSBarry Smith     while (its--) {
2296b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2297b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2298b1a666ecSBarry Smith 
2299b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2300b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2301b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2302b1a666ecSBarry Smith 
2303b1a666ecSBarry Smith       /* local sweep */
2304b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2305b1a666ecSBarry Smith     }
2306b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2307b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2308b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2309b1a666ecSBarry Smith       its--;
2310b1a666ecSBarry Smith     }
2311b1a666ecSBarry Smith     while (its--) {
2312b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2313b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2314b1a666ecSBarry Smith 
2315b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2316b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2317b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2318b1a666ecSBarry Smith 
2319b1a666ecSBarry Smith       /* local sweep */
2320b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2321b1a666ecSBarry Smith     }
2322b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2323b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2324b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2325b1a666ecSBarry Smith       its--;
2326b1a666ecSBarry Smith     }
2327b1a666ecSBarry Smith     while (its--) {
2328b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2329b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2330b1a666ecSBarry Smith 
2331b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2332b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2333b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2334b1a666ecSBarry Smith 
2335b1a666ecSBarry Smith       /* local sweep */
2336b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2337b1a666ecSBarry Smith     }
2338ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2339b1a666ecSBarry Smith 
23406bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2341b1a666ecSBarry Smith   PetscFunctionReturn(0);
2342b1a666ecSBarry Smith }
2343b1a666ecSBarry Smith 
2344bbead8a2SBarry Smith #undef __FUNCT__
234547f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ"
234647f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
234747f7623dSRémi Lacroix {
234847f7623dSRémi Lacroix   PetscErrorCode ierr;
234947f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
235047f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
235147f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
235247f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
235347f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
235447f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
235547f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
235647f7623dSRémi Lacroix   PetscReal      *work;
235747f7623dSRémi Lacroix 
235847f7623dSRémi Lacroix   PetscFunctionBegin;
235947f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
236047f7623dSRémi Lacroix   ierr = PetscMalloc(N*sizeof(PetscReal),&work);CHKERRQ(ierr);
236147f7623dSRémi Lacroix   ierr = PetscMemzero(work,N*sizeof(PetscReal));CHKERRQ(ierr);
236247f7623dSRémi Lacroix   if (type == NORM_2) {
236347f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
236447f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
236547f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
236647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
236747f7623dSRémi Lacroix           a_val++;
236847f7623dSRémi Lacroix         }
236947f7623dSRémi Lacroix       }
237047f7623dSRémi Lacroix     }
237147f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
237247f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
237347f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
237447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
237547f7623dSRémi Lacroix           b_val++;
237647f7623dSRémi Lacroix         }
237747f7623dSRémi Lacroix       }
237847f7623dSRémi Lacroix     }
237947f7623dSRémi Lacroix   } else if (type == NORM_1) {
238047f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
238147f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
238247f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
238347f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
238447f7623dSRémi Lacroix           a_val++;
238547f7623dSRémi Lacroix         }
238647f7623dSRémi Lacroix       }
238747f7623dSRémi Lacroix     }
238847f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
238947f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
239047f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
239147f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
239247f7623dSRémi Lacroix           b_val++;
239347f7623dSRémi Lacroix         }
239447f7623dSRémi Lacroix       }
239547f7623dSRémi Lacroix     }
239647f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
239747f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
239847f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
239947f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
240047f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
240147f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
240247f7623dSRémi Lacroix           a_val++;
240347f7623dSRémi Lacroix         }
240447f7623dSRémi Lacroix       }
240547f7623dSRémi Lacroix     }
240647f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
240747f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
240847f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
240947f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
241047f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
241147f7623dSRémi Lacroix           b_val++;
241247f7623dSRémi Lacroix         }
241347f7623dSRémi Lacroix       }
241447f7623dSRémi Lacroix     }
241547f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
241647f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
241747f7623dSRémi Lacroix     ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
241847f7623dSRémi Lacroix   } else {
241947f7623dSRémi Lacroix     ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
242047f7623dSRémi Lacroix   }
242147f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
242247f7623dSRémi Lacroix   if (type == NORM_2) {
242347f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
242447f7623dSRémi Lacroix   }
242547f7623dSRémi Lacroix   PetscFunctionReturn(0);
242647f7623dSRémi Lacroix }
242747f7623dSRémi Lacroix 
242847f7623dSRémi Lacroix #undef __FUNCT__
2429bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ"
2430713ccfa9SJed Brown PetscErrorCode  MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2431bbead8a2SBarry Smith {
2432bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2433bbead8a2SBarry Smith   PetscErrorCode ierr;
2434bbead8a2SBarry Smith 
2435bbead8a2SBarry Smith   PetscFunctionBegin;
2436bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
2437bbead8a2SBarry Smith   PetscFunctionReturn(0);
2438bbead8a2SBarry Smith }
2439bbead8a2SBarry Smith 
24408c7482ecSBarry Smith 
244179bdfe76SSatish Balay /* -------------------------------------------------------------------*/
24423964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2443cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2444cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2445cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
244697304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
24477c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24487c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2449cc2dc46cSBarry Smith                                        0,
2450cc2dc46cSBarry Smith                                        0,
2451cc2dc46cSBarry Smith                                        0,
245297304618SKris Buschelman                                 /*10*/ 0,
2453cc2dc46cSBarry Smith                                        0,
2454cc2dc46cSBarry Smith                                        0,
2455b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2456cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
245797304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
24587fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2459cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2460cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2461cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
246297304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2463cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2464cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2465cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2466d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2467cc2dc46cSBarry Smith                                        0,
2468cc2dc46cSBarry Smith                                        0,
2469cc2dc46cSBarry Smith                                        0,
2470cc2dc46cSBarry Smith                                        0,
24714994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2472273d9f13SBarry Smith                                        0,
2473cc2dc46cSBarry Smith                                        0,
2474cc2dc46cSBarry Smith                                        0,
2475cc2dc46cSBarry Smith                                        0,
2476d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2477cc2dc46cSBarry Smith                                        0,
2478cc2dc46cSBarry Smith                                        0,
2479cc2dc46cSBarry Smith                                        0,
2480cc2dc46cSBarry Smith                                        0,
2481d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
2482cc2dc46cSBarry Smith                                        MatGetSubMatrices_MPIBAIJ,
2483cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2484cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24853c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2486d519adbfSMatthew Knepley                                 /*44*/ 0,
2487cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
2488cc2dc46cSBarry Smith                                        0,
2489cc2dc46cSBarry Smith                                        0,
2490cc2dc46cSBarry Smith                                        0,
2491f73d5cc4SBarry Smith                                 /*49*/ 0,
2492cc2dc46cSBarry Smith                                        0,
2493cc2dc46cSBarry Smith                                        0,
2494cc2dc46cSBarry Smith                                        0,
2495cc2dc46cSBarry Smith                                        0,
249693dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2497cc2dc46cSBarry Smith                                        0,
2498cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
249982094794SBarry Smith                                        MatPermute_MPIBAIJ,
2500cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
2501d519adbfSMatthew Knepley                                 /*59*/ MatGetSubMatrix_MPIBAIJ,
2502f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2503f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2504357abbc8SBarry Smith                                        0,
25057843d17aSBarry Smith                                        0,
2506d519adbfSMatthew Knepley                                 /*64*/ 0,
25077843d17aSBarry Smith                                        0,
25087843d17aSBarry Smith                                        0,
25097843d17aSBarry Smith                                        0,
25107843d17aSBarry Smith                                        0,
2511d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
25127843d17aSBarry Smith                                        0,
251397304618SKris Buschelman                                        0,
251497304618SKris Buschelman                                        0,
251597304618SKris Buschelman                                        0,
2516d519adbfSMatthew Knepley                                 /*74*/ 0,
2517f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
251897304618SKris Buschelman                                        0,
251997304618SKris Buschelman                                        0,
252097304618SKris Buschelman                                        0,
2521d519adbfSMatthew Knepley                                 /*79*/ 0,
252297304618SKris Buschelman                                        0,
252397304618SKris Buschelman                                        0,
252497304618SKris Buschelman                                        0,
25255bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2526d519adbfSMatthew Knepley                                 /*84*/ 0,
2527865e5f61SKris Buschelman                                        0,
2528865e5f61SKris Buschelman                                        0,
2529865e5f61SKris Buschelman                                        0,
2530865e5f61SKris Buschelman                                        0,
2531d519adbfSMatthew Knepley                                 /*89*/ 0,
2532865e5f61SKris Buschelman                                        0,
2533865e5f61SKris Buschelman                                        0,
2534865e5f61SKris Buschelman                                        0,
2535865e5f61SKris Buschelman                                        0,
2536d519adbfSMatthew Knepley                                 /*94*/ 0,
2537865e5f61SKris Buschelman                                        0,
2538865e5f61SKris Buschelman                                        0,
253999cafbc1SBarry Smith                                        0,
254099cafbc1SBarry Smith                                        0,
2541d519adbfSMatthew Knepley                                 /*99*/ 0,
254299cafbc1SBarry Smith                                        0,
254399cafbc1SBarry Smith                                        0,
254499cafbc1SBarry Smith                                        0,
254599cafbc1SBarry Smith                                        0,
2546d519adbfSMatthew Knepley                                 /*104*/0,
254799cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25488c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
25498c7482ecSBarry Smith                                        0,
25508c7482ecSBarry Smith                                        0,
2551d519adbfSMatthew Knepley                                 /*109*/0,
25528c7482ecSBarry Smith                                        0,
25538c7482ecSBarry Smith                                        0,
25548c7482ecSBarry Smith                                        0,
25558c7482ecSBarry Smith                                        0,
2556d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
25578c7482ecSBarry Smith                                        0,
25584683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
25594683f7a4SShri Abhyankar                                        0,
25604683f7a4SShri Abhyankar                                        0,
25614683f7a4SShri Abhyankar                                 /*119*/0,
25624683f7a4SShri Abhyankar                                        0,
25634683f7a4SShri Abhyankar                                        0,
2564bbead8a2SBarry Smith                                        0,
2565e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2566bbead8a2SBarry Smith                                 /*124*/0,
256747f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
25683964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
25693964eb88SJed Brown                                        0,
25703964eb88SJed Brown                                        0,
25713964eb88SJed Brown                                /*129*/ 0,
25723964eb88SJed Brown                                        0,
25733964eb88SJed Brown                                        0,
25743964eb88SJed Brown                                        0,
25753964eb88SJed Brown                                        0,
25763964eb88SJed Brown                                /*134*/ 0,
25773964eb88SJed Brown                                        0,
25783964eb88SJed Brown                                        0,
25793964eb88SJed Brown                                        0,
25803964eb88SJed Brown                                        0,
25813964eb88SJed Brown                                /*139*/ 0,
2582f9426fe0SMark Adams                                        0,
25831919a2e2SJed Brown                                        0,
2584f86b9fbaSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ
25858c7482ecSBarry Smith };
258679bdfe76SSatish Balay 
25874a2ae208SSatish Balay #undef __FUNCT__
25884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
258911bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
25905ef9f2a5SBarry Smith {
25915ef9f2a5SBarry Smith   PetscFunctionBegin;
25925ef9f2a5SBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
25935ef9f2a5SBarry Smith   PetscFunctionReturn(0);
25945ef9f2a5SBarry Smith }
259579bdfe76SSatish Balay 
25968cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2597d94109b8SHong Zhang 
2598aac34f13SBarry Smith #undef __FUNCT__
2599aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2600cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2601aac34f13SBarry Smith {
2602b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2603b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2604b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2605b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2606d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2607aac34f13SBarry Smith   PetscErrorCode ierr;
2608aac34f13SBarry Smith 
2609aac34f13SBarry Smith   PetscFunctionBegin;
261026283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
261126283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
261226283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
261326283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2614e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2615d0f46423SBarry Smith   m      = B->rmap->n/bs;
2616d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2617d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2618d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2619b8d659d7SLisandro Dalcin 
2620e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2621*dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2622aac34f13SBarry Smith   for (i=0; i<m; i++) {
2623cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2624e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2625b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2626cf12db73SBarry Smith     JJ     = jj + ii[i];
2627b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2628aac34f13SBarry Smith       if (*JJ >= cstart) break;
2629aac34f13SBarry Smith       JJ++;
2630aac34f13SBarry Smith     }
2631aac34f13SBarry Smith     d = 0;
2632b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2633aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2634aac34f13SBarry Smith       d++;
2635aac34f13SBarry Smith     }
2636aac34f13SBarry Smith     d_nnz[i] = d;
2637b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2638aac34f13SBarry Smith   }
2639aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2640fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2641aac34f13SBarry Smith 
2642b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2643b8d659d7SLisandro Dalcin   if (!values) {
2644fca92195SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2645b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2646b8d659d7SLisandro Dalcin   }
2647b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2648b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2649cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2650cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
26513adadaf3SJed Brown     if (!roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2652cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2653b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
26543adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
26553adadaf3SJed Brown       PetscInt j;
26563adadaf3SJed Brown       for (j=0; j<ncols; j++) {
26573adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
26583adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
26593adadaf3SJed Brown       }
26603adadaf3SJed Brown     }
2661aac34f13SBarry Smith   }
2662aac34f13SBarry Smith 
2663b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2664aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2665aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26667827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2667aac34f13SBarry Smith   PetscFunctionReturn(0);
2668aac34f13SBarry Smith }
2669aac34f13SBarry Smith 
2670aac34f13SBarry Smith #undef __FUNCT__
2671aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2672aac34f13SBarry Smith /*@C
2673dfb205c3SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2674aac34f13SBarry Smith    (the default parallel PETSc format).
2675aac34f13SBarry Smith 
2676aac34f13SBarry Smith    Collective on MPI_Comm
2677aac34f13SBarry Smith 
2678aac34f13SBarry Smith    Input Parameters:
2679aac34f13SBarry Smith +  A - the matrix
2680dfb205c3SBarry Smith .  bs - the block size
2681aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2682aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2683aac34f13SBarry Smith -  v - optional values in the matrix
2684aac34f13SBarry Smith 
2685aac34f13SBarry Smith    Level: developer
2686aac34f13SBarry Smith 
26873adadaf3SJed Brown    Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
26883adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
26893adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
26903adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26913adadaf3SJed Brown    block column and the second index is over columns within a block.
26923adadaf3SJed Brown 
2693aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2694aac34f13SBarry Smith 
26953adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2696aac34f13SBarry Smith @*/
26977087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2698aac34f13SBarry Smith {
26994ac538c5SBarry Smith   PetscErrorCode ierr;
2700aac34f13SBarry Smith 
2701aac34f13SBarry Smith   PetscFunctionBegin;
27026ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
27036ba663aaSJed Brown   PetscValidType(B,1);
27046ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
27054ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2706aac34f13SBarry Smith   PetscFunctionReturn(0);
2707aac34f13SBarry Smith }
2708aac34f13SBarry Smith 
27094a2ae208SSatish Balay #undef __FUNCT__
2710a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2711b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2712a23d5eceSKris Buschelman {
2713a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2714dfbe8321SBarry Smith   PetscErrorCode ierr;
2715535b19f3SBarry Smith   PetscInt       i;
2716a23d5eceSKris Buschelman 
2717a23d5eceSKris Buschelman   PetscFunctionBegin;
271826283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
271926283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
272026283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
272126283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2722e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2723899cda47SBarry Smith 
2724a23d5eceSKris Buschelman   if (d_nnz) {
2725d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2726e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2727a23d5eceSKris Buschelman     }
2728a23d5eceSKris Buschelman   }
2729a23d5eceSKris Buschelman   if (o_nnz) {
2730d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2731e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2732a23d5eceSKris Buschelman     }
2733a23d5eceSKris Buschelman   }
2734a23d5eceSKris Buschelman 
2735a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2736a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2737d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2738d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2739d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2740d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2741a23d5eceSKris Buschelman 
2742a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2743d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2744a23d5eceSKris Buschelman   }
2745d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2746d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2747d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2748d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2749a23d5eceSKris Buschelman 
2750526dfc15SBarry Smith   if (!B->preallocated) {
2751f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2752d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
27539c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
27543bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2755f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2756d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
27579c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
27583bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2759ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2760526dfc15SBarry Smith   }
2761a23d5eceSKris Buschelman 
2762526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2763526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2764526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2765a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2766a23d5eceSKris Buschelman }
2767a23d5eceSKris Buschelman 
27687087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
27697087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
27705bf65638SKris Buschelman 
277182094794SBarry Smith #undef __FUNCT__
277282094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
27738cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
277482094794SBarry Smith {
277582094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
277682094794SBarry Smith   PetscErrorCode ierr;
277782094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
277882094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
277982094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
278082094794SBarry Smith 
278182094794SBarry Smith   PetscFunctionBegin;
278282094794SBarry Smith   ierr  = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr);
278382094794SBarry Smith   ii[0] = 0;
278482094794SBarry Smith   for (i=0; i<M; i++) {
2785e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2786e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
278782094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
27885ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27895ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
27905ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
27915ee9ba1cSJed Brown     }
279282094794SBarry Smith   }
279382094794SBarry Smith   ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr);
279482094794SBarry Smith   cnt  = 0;
279582094794SBarry Smith   for (i=0; i<M; i++) {
279682094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
279782094794SBarry Smith       if (garray[jo[j]] > rstart) break;
279882094794SBarry Smith       jj[cnt++] = garray[jo[j]];
279982094794SBarry Smith     }
280082094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
28015ee9ba1cSJed Brown       if (jd[k] != i) {
280282094794SBarry Smith         jj[cnt++] = rstart + jd[k];
280382094794SBarry Smith       }
28045ee9ba1cSJed Brown     }
280582094794SBarry Smith     for (; j<io[i+1]; j++) {
280682094794SBarry Smith       jj[cnt++] = garray[jo[j]];
280782094794SBarry Smith     }
280882094794SBarry Smith   }
2809ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
281082094794SBarry Smith   PetscFunctionReturn(0);
281182094794SBarry Smith }
281282094794SBarry Smith 
2813c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
281462471d69SBarry Smith 
28158cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2816b2573a8aSBarry Smith 
281762471d69SBarry Smith #undef __FUNCT__
281862471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ"
28198cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
282062471d69SBarry Smith {
282162471d69SBarry Smith   PetscErrorCode ierr;
282262471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
282362471d69SBarry Smith   Mat            B;
282485a69837SSatish Balay   Mat_MPIAIJ     *b;
282562471d69SBarry Smith 
282662471d69SBarry Smith   PetscFunctionBegin;
2827ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
282862471d69SBarry Smith 
2829ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
283062471d69SBarry Smith   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
28316d0a4a0eSHong Zhang   ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
28320298fd71SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
28330298fd71SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
283462471d69SBarry Smith   b    = (Mat_MPIAIJ*) B->data;
283562471d69SBarry Smith 
28366bf464f9SBarry Smith   ierr = MatDestroy(&b->A);CHKERRQ(ierr);
28376bf464f9SBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2838ab9863d7SBarry Smith   ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
283962471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
284062471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
284162471d69SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
284262471d69SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28436a719282SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28446a719282SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
284562471d69SBarry Smith   if (reuse == MAT_REUSE_MATRIX) {
284662471d69SBarry Smith     ierr = MatHeaderReplace(A,B);CHKERRQ(ierr);
284762471d69SBarry Smith   } else {
284862471d69SBarry Smith    *newmat = B;
284962471d69SBarry Smith   }
285062471d69SBarry Smith   PetscFunctionReturn(0);
285162471d69SBarry Smith }
285262471d69SBarry Smith 
2853450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
28548cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*);
2855450b117fSShri Abhyankar #endif
2856450b117fSShri Abhyankar 
28570bad9183SKris Buschelman /*MC
2858fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28590bad9183SKris Buschelman 
28600bad9183SKris Buschelman    Options Database Keys:
28618c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
28628c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28638c07d4e3SBarry Smith - -mat_use_hash_table <fact>
28640bad9183SKris Buschelman 
28650bad9183SKris Buschelman   Level: beginner
28660bad9183SKris Buschelman 
28670bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
28680bad9183SKris Buschelman M*/
28690bad9183SKris Buschelman 
28708cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
2871c0cdd4a1SDahai Guo 
2872a23d5eceSKris Buschelman #undef __FUNCT__
28734a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
28748cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2875273d9f13SBarry Smith {
2876273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2877dfbe8321SBarry Smith   PetscErrorCode ierr;
2878ace3abfcSBarry Smith   PetscBool      flg;
2879273d9f13SBarry Smith 
2880273d9f13SBarry Smith   PetscFunctionBegin;
288138f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
288282502324SSatish Balay   B->data = (void*)b;
288382502324SSatish Balay 
2884273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2885273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2886273d9f13SBarry Smith 
2887273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2888ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2889ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2890273d9f13SBarry Smith 
2891273d9f13SBarry Smith   /* build local table of row and column ownerships */
2892899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2893273d9f13SBarry Smith 
2894273d9f13SBarry Smith   /* build cache for off array entries formed */
2895ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
289626fbe8dcSKarl Rupp 
2897273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28980298fd71SBarry Smith   b->colmap      = NULL;
28990298fd71SBarry Smith   b->garray      = NULL;
2900273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2901273d9f13SBarry Smith 
2902273d9f13SBarry Smith   /* stuff used in block assembly */
2903273d9f13SBarry Smith   b->barray = 0;
2904273d9f13SBarry Smith 
2905273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2906273d9f13SBarry Smith   b->lvec  = 0;
2907273d9f13SBarry Smith   b->Mvctx = 0;
2908273d9f13SBarry Smith 
2909273d9f13SBarry Smith   /* stuff for MatGetRow() */
2910273d9f13SBarry Smith   b->rowindices   = 0;
2911273d9f13SBarry Smith   b->rowvalues    = 0;
2912273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2913273d9f13SBarry Smith 
2914273d9f13SBarry Smith   /* hash table stuff */
2915273d9f13SBarry Smith   b->ht           = 0;
2916273d9f13SBarry Smith   b->hd           = 0;
2917273d9f13SBarry Smith   b->ht_size      = 0;
2918273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2919273d9f13SBarry Smith   b->ht_fact      = 0;
2920273d9f13SBarry Smith   b->ht_total_ct  = 0;
2921273d9f13SBarry Smith   b->ht_insert_ct = 0;
2922273d9f13SBarry Smith 
29237a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
29247a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29257a868f3eSHong Zhang 
2926ce94432eSBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
29270298fd71SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
2928273d9f13SBarry Smith   if (flg) {
2929f6275e2eSBarry Smith     PetscReal fact = 1.39;
29304e0d8c25SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
29310298fd71SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
2932273d9f13SBarry Smith     if (fact <= 1.0) fact = 1.39;
2933273d9f13SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
29341e2582c4SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2935273d9f13SBarry Smith   }
29368c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
29378c07d4e3SBarry Smith 
2938450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
2939bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_baij_mumps);CHKERRQ(ierr);
2940450b117fSShri Abhyankar #endif
2941bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
2942bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
2943bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
2944bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2945bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2946bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2947bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2948bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
2949bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
2950bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
2951bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr);
295217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
2953273d9f13SBarry Smith   PetscFunctionReturn(0);
2954273d9f13SBarry Smith }
2955273d9f13SBarry Smith 
2956209238afSKris Buschelman /*MC
2957002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2958209238afSKris Buschelman 
2959209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2960209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2961209238afSKris Buschelman 
2962209238afSKris Buschelman    Options Database Keys:
2963209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2964209238afSKris Buschelman 
2965209238afSKris Buschelman   Level: beginner
2966209238afSKris Buschelman 
296769b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2968209238afSKris Buschelman M*/
2969209238afSKris Buschelman 
29704a2ae208SSatish Balay #undef __FUNCT__
29714a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2972273d9f13SBarry Smith /*@C
2973aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2974273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2975273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2976273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2977273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2978273d9f13SBarry Smith 
2979273d9f13SBarry Smith    Collective on Mat
2980273d9f13SBarry Smith 
2981273d9f13SBarry Smith    Input Parameters:
2982273d9f13SBarry Smith +  A - the matrix
2983e8271787SHong Zhang .  bs   - size of block
2984273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2985273d9f13SBarry Smith            submatrix  (same for all local rows)
2986273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2987273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
29880298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
298995742e49SBarry Smith            set it even if it is zero.
2990273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2991273d9f13SBarry Smith            submatrix (same for all local rows).
2992273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2993273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
29940298fd71SBarry Smith            each block row) or NULL.
2995273d9f13SBarry Smith 
299649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2997273d9f13SBarry Smith 
2998273d9f13SBarry Smith    Options Database Keys:
29998c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30008c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3001273d9f13SBarry Smith 
3002273d9f13SBarry Smith    Notes:
3003273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3004273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3005273d9f13SBarry Smith 
3006273d9f13SBarry Smith    Storage Information:
3007273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3008273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3009273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3010273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3011273d9f13SBarry Smith 
3012273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3013273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
30140298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3015273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3016273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3017273d9f13SBarry Smith 
3018273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3019273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3020273d9f13SBarry Smith 
3021273d9f13SBarry Smith .vb
3022273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3023a4b1a0f6SJed Brown           --------------------------
3024273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3025273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3026273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3027a4b1a0f6SJed Brown           --------------------------
3028273d9f13SBarry Smith .ve
3029273d9f13SBarry Smith 
3030273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3031273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3032273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3033273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3034273d9f13SBarry Smith 
3035273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3036273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3037273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3038273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3039273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3040273d9f13SBarry Smith    matrices.
3041273d9f13SBarry Smith 
3042aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3043aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3044aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3045aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3046aa95bbe8SBarry Smith 
3047273d9f13SBarry Smith    Level: intermediate
3048273d9f13SBarry Smith 
3049273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3050273d9f13SBarry Smith 
3051ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3052273d9f13SBarry Smith @*/
30537087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3054273d9f13SBarry Smith {
30554ac538c5SBarry Smith   PetscErrorCode ierr;
3056273d9f13SBarry Smith 
3057273d9f13SBarry Smith   PetscFunctionBegin;
30586ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
30596ba663aaSJed Brown   PetscValidType(B,1);
30606ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
30614ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3062273d9f13SBarry Smith   PetscFunctionReturn(0);
3063273d9f13SBarry Smith }
3064273d9f13SBarry Smith 
30654a2ae208SSatish Balay #undef __FUNCT__
306669b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ"
306779bdfe76SSatish Balay /*@C
306869b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
306979bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
307079bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
307179bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
307279bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
307379bdfe76SSatish Balay 
3074db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3075db81eaa0SLois Curfman McInnes 
307679bdfe76SSatish Balay    Input Parameters:
3077db81eaa0SLois Curfman McInnes +  comm - MPI communicator
307879bdfe76SSatish Balay .  bs   - size of blockk
307979bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
308092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
308192e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
308292e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
308392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
308492e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3085be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3086be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
308747a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
308879bdfe76SSatish Balay            submatrix  (same for all local rows)
308947a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
309092e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30910298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
309295742e49SBarry Smith            and set it even if it is zero.
309347a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
309479bdfe76SSatish Balay            submatrix (same for all local rows).
309547a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
309692e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30970298fd71SBarry Smith            each block row) or NULL.
309879bdfe76SSatish Balay 
309979bdfe76SSatish Balay    Output Parameter:
310079bdfe76SSatish Balay .  A - the matrix
310179bdfe76SSatish Balay 
3102db81eaa0SLois Curfman McInnes    Options Database Keys:
31038c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31048c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
31053ffaccefSLois Curfman McInnes 
3106175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3107ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3108175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3109175b88e8SBarry Smith 
3110b259b22eSLois Curfman McInnes    Notes:
311149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
311249a6f317SBarry Smith 
311347a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
311447a75d0bSBarry Smith 
311579bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
311679bdfe76SSatish Balay    (possibly both).
311779bdfe76SSatish Balay 
3118be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3119be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3120be79a94dSBarry Smith 
312179bdfe76SSatish Balay    Storage Information:
312279bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
312379bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
312479bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
312579bdfe76SSatish Balay    local matrix (a rectangular submatrix).
312679bdfe76SSatish Balay 
312779bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
312879bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
31290298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
313079bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
313179bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
313279bdfe76SSatish Balay 
313379bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
313479bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
313579bdfe76SSatish Balay 
3136db81eaa0SLois Curfman McInnes .vb
3137db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3138a4b1a0f6SJed Brown           --------------------------
3139db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3140db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3141db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3142a4b1a0f6SJed Brown           --------------------------
3143db81eaa0SLois Curfman McInnes .ve
314479bdfe76SSatish Balay 
314579bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
314679bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
314779bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
314857b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
314979bdfe76SSatish Balay 
3150d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3151d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
315279bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
315392e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
315492e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31556da5968aSLois Curfman McInnes    matrices.
315679bdfe76SSatish Balay 
3157027ccd11SLois Curfman McInnes    Level: intermediate
3158027ccd11SLois Curfman McInnes 
315992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
316079bdfe76SSatish Balay 
316169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
316279bdfe76SSatish Balay @*/
316369b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
316479bdfe76SSatish Balay {
31656849ba73SBarry Smith   PetscErrorCode ierr;
3166b24ad042SBarry Smith   PetscMPIInt    size;
316779bdfe76SSatish Balay 
3168d64ed03dSBarry Smith   PetscFunctionBegin;
3169f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3170f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3171d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3172273d9f13SBarry Smith   if (size > 1) {
3173273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3174273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3175273d9f13SBarry Smith   } else {
3176273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3177273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
31783914022bSBarry Smith   }
31793a40ed3dSBarry Smith   PetscFunctionReturn(0);
318079bdfe76SSatish Balay }
3181026e39d0SSatish Balay 
31824a2ae208SSatish Balay #undef __FUNCT__
31834a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
31846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
31850ac07820SSatish Balay {
31860ac07820SSatish Balay   Mat            mat;
31870ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3188dfbe8321SBarry Smith   PetscErrorCode ierr;
3189b24ad042SBarry Smith   PetscInt       len=0;
31900ac07820SSatish Balay 
3191d64ed03dSBarry Smith   PetscFunctionBegin;
31920ac07820SSatish Balay   *newmat = 0;
3193ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3194d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
31957adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
31961d5dac46SHong Zhang   ierr    = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
31977fff6886SHong Zhang 
3198d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3199273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32000ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32017fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32027fff6886SHong Zhang 
3203273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3204d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
32050ac07820SSatish Balay   a->bs2        = oldmat->bs2;
32060ac07820SSatish Balay   a->mbs        = oldmat->mbs;
32070ac07820SSatish Balay   a->nbs        = oldmat->nbs;
32080ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
32090ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
32100ac07820SSatish Balay 
32111e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
32121e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3213899cda47SBarry Smith 
32140ac07820SSatish Balay   a->size         = oldmat->size;
32150ac07820SSatish Balay   a->rank         = oldmat->rank;
3216aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3217aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3218aef5e8e0SSatish Balay   a->rowindices   = 0;
32190ac07820SSatish Balay   a->rowvalues    = 0;
32200ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
322130793edcSSatish Balay   a->barray       = 0;
3222899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3223899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3224899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3225899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32260ac07820SSatish Balay 
3227133cdb44SSatish Balay   /* hash table stuff */
3228133cdb44SSatish Balay   a->ht           = 0;
3229133cdb44SSatish Balay   a->hd           = 0;
3230133cdb44SSatish Balay   a->ht_size      = 0;
3231133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
323225fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3233133cdb44SSatish Balay   a->ht_total_ct  = 0;
3234133cdb44SSatish Balay   a->ht_insert_ct = 0;
3235133cdb44SSatish Balay 
3236899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
32370ac07820SSatish Balay   if (oldmat->colmap) {
3238aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
32390f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
324048e59246SSatish Balay #else
3241b24ad042SBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
32423bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3243b24ad042SBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
324448e59246SSatish Balay #endif
32450ac07820SSatish Balay   } else a->colmap = 0;
32464beb1cfeSHong Zhang 
32470ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3248b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
32493bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3250b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
32510ac07820SSatish Balay   } else a->garray = 0;
32520ac07820SSatish Balay 
3253ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
32540ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
32553bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
32560ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
32573bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
32587fff6886SHong Zhang 
32592e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
32603bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
32612e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
32623bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3263140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
32640ac07820SSatish Balay   *newmat = mat;
32653a40ed3dSBarry Smith   PetscFunctionReturn(0);
32660ac07820SSatish Balay }
326757b952d6SSatish Balay 
32684a2ae208SSatish Balay #undef __FUNCT__
32695bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ"
3270112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer)
32714683f7a4SShri Abhyankar {
32724683f7a4SShri Abhyankar   PetscErrorCode ierr;
32734683f7a4SShri Abhyankar   int            fd;
32744683f7a4SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
32754683f7a4SShri Abhyankar   PetscScalar    *vals,*buf;
3276ce94432eSBarry Smith   MPI_Comm       comm;
32774683f7a4SShri Abhyankar   MPI_Status     status;
32784683f7a4SShri Abhyankar   PetscMPIInt    rank,size,maxnz;
32794683f7a4SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
32800298fd71SBarry Smith   PetscInt       *locrowlens = NULL,*procsnz = NULL,*browners = NULL;
32814683f7a4SShri Abhyankar   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
32824683f7a4SShri Abhyankar   PetscMPIInt    tag    = ((PetscObject)viewer)->tag;
32830298fd71SBarry Smith   PetscInt       *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount;
32844683f7a4SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols;
32854683f7a4SShri Abhyankar 
32864683f7a4SShri Abhyankar   PetscFunctionBegin;
3287ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
32880298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
32890298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
32904683f7a4SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
32914683f7a4SShri Abhyankar 
32924683f7a4SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
32934683f7a4SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
32944683f7a4SShri Abhyankar   if (!rank) {
32954683f7a4SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
32964683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
32974683f7a4SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
32984683f7a4SShri Abhyankar   }
32994683f7a4SShri Abhyankar 
33004683f7a4SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
33014683f7a4SShri Abhyankar 
33024683f7a4SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
33034683f7a4SShri Abhyankar   M    = header[1]; N = header[2];
33044683f7a4SShri Abhyankar 
33054683f7a4SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
33064683f7a4SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
33074683f7a4SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
33084683f7a4SShri Abhyankar 
33094683f7a4SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
33104683f7a4SShri Abhyankar   if (sizesset) {
33114683f7a4SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
33124683f7a4SShri Abhyankar   }
3313abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
3314abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
33154683f7a4SShri Abhyankar 
3316ce94432eSBarry Smith   if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices");
33174683f7a4SShri Abhyankar 
33184683f7a4SShri Abhyankar   /*
33194683f7a4SShri Abhyankar      This code adds extra rows to make sure the number of rows is
33204683f7a4SShri Abhyankar      divisible by the blocksize
33214683f7a4SShri Abhyankar   */
33224683f7a4SShri Abhyankar   Mbs        = M/bs;
33234683f7a4SShri Abhyankar   extra_rows = bs - M + bs*Mbs;
33244683f7a4SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
33254683f7a4SShri Abhyankar   else                  Mbs++;
33264683f7a4SShri Abhyankar   if (extra_rows && !rank) {
33274683f7a4SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
33284683f7a4SShri Abhyankar   }
33294683f7a4SShri Abhyankar 
33304683f7a4SShri Abhyankar   /* determine ownership of all rows */
33314683f7a4SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
33324683f7a4SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
33334683f7a4SShri Abhyankar     m   = mbs*bs;
33344683f7a4SShri Abhyankar   } else { /* User set */
33354683f7a4SShri Abhyankar     m   = newmat->rmap->n;
33364683f7a4SShri Abhyankar     mbs = m/bs;
33374683f7a4SShri Abhyankar   }
3338*dcca6d9dSJed Brown   ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
33394683f7a4SShri Abhyankar   ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
33404683f7a4SShri Abhyankar 
33414683f7a4SShri Abhyankar   /* process 0 needs enough room for process with most rows */
33424683f7a4SShri Abhyankar   if (!rank) {
33434683f7a4SShri Abhyankar     mmax = rowners[1];
33441251c579SMatthew G Knepley     for (i=2; i<=size; i++) {
33454683f7a4SShri Abhyankar       mmax = PetscMax(mmax,rowners[i]);
33464683f7a4SShri Abhyankar     }
33474683f7a4SShri Abhyankar     mmax*=bs;
33483964eb88SJed Brown   } else mmax = -1;             /* unused, but compiler warns anyway */
33494683f7a4SShri Abhyankar 
33504683f7a4SShri Abhyankar   rowners[0] = 0;
33514683f7a4SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
33524683f7a4SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
33534683f7a4SShri Abhyankar   rstart = rowners[rank];
33544683f7a4SShri Abhyankar   rend   = rowners[rank+1];
33554683f7a4SShri Abhyankar 
33564683f7a4SShri Abhyankar   /* distribute row lengths to all processors */
33575aa9a6beSBarry Smith   ierr = PetscMalloc(m*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
33584683f7a4SShri Abhyankar   if (!rank) {
33594683f7a4SShri Abhyankar     mend = m;
33604683f7a4SShri Abhyankar     if (size == 1) mend = mend - extra_rows;
33614683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
33624683f7a4SShri Abhyankar     for (j=mend; j<m; j++) locrowlens[j] = 1;
33635aa9a6beSBarry Smith     ierr = PetscMalloc(mmax*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
33644683f7a4SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
33654683f7a4SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
33664683f7a4SShri Abhyankar     for (j=0; j<m; j++) {
33674683f7a4SShri Abhyankar       procsnz[0] += locrowlens[j];
33684683f7a4SShri Abhyankar     }
33694683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
33704683f7a4SShri Abhyankar       mend = browners[i+1] - browners[i];
33714683f7a4SShri Abhyankar       if (i == size-1) mend = mend - extra_rows;
33724683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
33734683f7a4SShri Abhyankar       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
33744683f7a4SShri Abhyankar       /* calculate the number of nonzeros on each processor */
33754683f7a4SShri Abhyankar       for (j=0; j<browners[i+1]-browners[i]; j++) {
33764683f7a4SShri Abhyankar         procsnz[i] += rowlengths[j];
33774683f7a4SShri Abhyankar       }
33784683f7a4SShri Abhyankar       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
33794683f7a4SShri Abhyankar     }
33804683f7a4SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
33814683f7a4SShri Abhyankar   } else {
33824683f7a4SShri Abhyankar     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
33834683f7a4SShri Abhyankar   }
33844683f7a4SShri Abhyankar 
33854683f7a4SShri Abhyankar   if (!rank) {
33864683f7a4SShri Abhyankar     /* determine max buffer needed and allocate it */
33874683f7a4SShri Abhyankar     maxnz = procsnz[0];
33884683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
33894683f7a4SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
33904683f7a4SShri Abhyankar     }
33914683f7a4SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
33924683f7a4SShri Abhyankar 
33934683f7a4SShri Abhyankar     /* read in my part of the matrix column indices  */
33944683f7a4SShri Abhyankar     nz     = procsnz[0];
33954683f7a4SShri Abhyankar     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
33964683f7a4SShri Abhyankar     mycols = ibuf;
33974683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
33984683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
339926fbe8dcSKarl Rupp     if (size == 1) {
340026fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
340126fbe8dcSKarl Rupp     }
34024683f7a4SShri Abhyankar 
34034683f7a4SShri Abhyankar     /* read in every ones (except the last) and ship off */
34044683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
34054683f7a4SShri Abhyankar       nz   = procsnz[i];
34064683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
34074683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
34084683f7a4SShri Abhyankar     }
34094683f7a4SShri Abhyankar     /* read in the stuff for the last proc */
34104683f7a4SShri Abhyankar     if (size != 1) {
34114683f7a4SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
34124683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
34134683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
34144683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
34154683f7a4SShri Abhyankar     }
34164683f7a4SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
34174683f7a4SShri Abhyankar   } else {
34184683f7a4SShri Abhyankar     /* determine buffer space needed for message */
34194683f7a4SShri Abhyankar     nz = 0;
34204683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
34214683f7a4SShri Abhyankar       nz += locrowlens[i];
34224683f7a4SShri Abhyankar     }
34234683f7a4SShri Abhyankar     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
34244683f7a4SShri Abhyankar     mycols = ibuf;
34254683f7a4SShri Abhyankar     /* receive message of column indices*/
34264683f7a4SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
34274683f7a4SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
34284683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
34294683f7a4SShri Abhyankar   }
34304683f7a4SShri Abhyankar 
34314683f7a4SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
3432*dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
3433*dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
34344683f7a4SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
34354683f7a4SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
34364683f7a4SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
34374683f7a4SShri Abhyankar   rowcount = 0; nzcount = 0;
34384683f7a4SShri Abhyankar   for (i=0; i<mbs; i++) {
34394683f7a4SShri Abhyankar     dcount  = 0;
34404683f7a4SShri Abhyankar     odcount = 0;
34414683f7a4SShri Abhyankar     for (j=0; j<bs; j++) {
34424683f7a4SShri Abhyankar       kmax = locrowlens[rowcount];
34434683f7a4SShri Abhyankar       for (k=0; k<kmax; k++) {
34444683f7a4SShri Abhyankar         tmp = mycols[nzcount++]/bs;
34454683f7a4SShri Abhyankar         if (!mask[tmp]) {
34464683f7a4SShri Abhyankar           mask[tmp] = 1;
34474683f7a4SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
34484683f7a4SShri Abhyankar           else masked1[dcount++] = tmp;
34494683f7a4SShri Abhyankar         }
34504683f7a4SShri Abhyankar       }
34514683f7a4SShri Abhyankar       rowcount++;
34524683f7a4SShri Abhyankar     }
34534683f7a4SShri Abhyankar 
34544683f7a4SShri Abhyankar     dlens[i]  = dcount;
34554683f7a4SShri Abhyankar     odlens[i] = odcount;
34564683f7a4SShri Abhyankar 
34574683f7a4SShri Abhyankar     /* zero out the mask elements we set */
34584683f7a4SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
34594683f7a4SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
34604683f7a4SShri Abhyankar   }
34614683f7a4SShri Abhyankar 
34624683f7a4SShri Abhyankar 
34634683f7a4SShri Abhyankar   if (!sizesset) {
34644683f7a4SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
34654683f7a4SShri Abhyankar   }
34664683f7a4SShri Abhyankar   ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
34674683f7a4SShri Abhyankar 
34684683f7a4SShri Abhyankar   if (!rank) {
34694683f7a4SShri Abhyankar     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
34704683f7a4SShri Abhyankar     /* read in my part of the matrix numerical values  */
34714683f7a4SShri Abhyankar     nz     = procsnz[0];
34724683f7a4SShri Abhyankar     vals   = buf;
34734683f7a4SShri Abhyankar     mycols = ibuf;
34744683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
34754683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
347626fbe8dcSKarl Rupp     if (size == 1) {
347726fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
347826fbe8dcSKarl Rupp     }
34794683f7a4SShri Abhyankar 
34804683f7a4SShri Abhyankar     /* insert into matrix */
34814683f7a4SShri Abhyankar     jj = rstart*bs;
34824683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
34834683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
34844683f7a4SShri Abhyankar       mycols += locrowlens[i];
34854683f7a4SShri Abhyankar       vals   += locrowlens[i];
34864683f7a4SShri Abhyankar       jj++;
34874683f7a4SShri Abhyankar     }
34884683f7a4SShri Abhyankar     /* read in other processors (except the last one) and ship out */
34894683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
34904683f7a4SShri Abhyankar       nz   = procsnz[i];
34914683f7a4SShri Abhyankar       vals = buf;
34924683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3493479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
34944683f7a4SShri Abhyankar     }
34954683f7a4SShri Abhyankar     /* the last proc */
34964683f7a4SShri Abhyankar     if (size != 1) {
34974683f7a4SShri Abhyankar       nz   = procsnz[i] - extra_rows;
34984683f7a4SShri Abhyankar       vals = buf;
34994683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
35004683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
3501479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
35024683f7a4SShri Abhyankar     }
35034683f7a4SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
35044683f7a4SShri Abhyankar   } else {
35054683f7a4SShri Abhyankar     /* receive numeric values */
35064683f7a4SShri Abhyankar     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
35074683f7a4SShri Abhyankar 
35084683f7a4SShri Abhyankar     /* receive message of values*/
35094683f7a4SShri Abhyankar     vals   = buf;
35104683f7a4SShri Abhyankar     mycols = ibuf;
3511479e424cSMichael Lange     ierr   = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
35124683f7a4SShri Abhyankar 
35134683f7a4SShri Abhyankar     /* insert into matrix */
35144683f7a4SShri Abhyankar     jj = rstart*bs;
35154683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
35164683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
35174683f7a4SShri Abhyankar       mycols += locrowlens[i];
35184683f7a4SShri Abhyankar       vals   += locrowlens[i];
35194683f7a4SShri Abhyankar       jj++;
35204683f7a4SShri Abhyankar     }
35214683f7a4SShri Abhyankar   }
35224683f7a4SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
35234683f7a4SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
35244683f7a4SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
35254683f7a4SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
35264683f7a4SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
35274683f7a4SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
35284683f7a4SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
35294683f7a4SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
35304683f7a4SShri Abhyankar   PetscFunctionReturn(0);
35314683f7a4SShri Abhyankar }
35324683f7a4SShri Abhyankar 
35334683f7a4SShri Abhyankar #undef __FUNCT__
35344a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3535133cdb44SSatish Balay /*@
3536133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3537133cdb44SSatish Balay 
3538133cdb44SSatish Balay    Input Parameters:
3539133cdb44SSatish Balay .  mat  - the matrix
3540133cdb44SSatish Balay .  fact - factor
3541133cdb44SSatish Balay 
3542c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3543fee21e36SBarry Smith 
35448c890885SBarry Smith    Level: advanced
35458c890885SBarry Smith 
3546133cdb44SSatish Balay   Notes:
35478c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3548133cdb44SSatish Balay 
3549133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3550133cdb44SSatish Balay 
3551133cdb44SSatish Balay .seealso: MatSetOption()
3552133cdb44SSatish Balay @*/
35537087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3554133cdb44SSatish Balay {
35554ac538c5SBarry Smith   PetscErrorCode ierr;
35565bf65638SKris Buschelman 
35575bf65638SKris Buschelman   PetscFunctionBegin;
35584ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
35595bf65638SKris Buschelman   PetscFunctionReturn(0);
35605bf65638SKris Buschelman }
35615bf65638SKris Buschelman 
35625bf65638SKris Buschelman #undef __FUNCT__
35635bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
35647087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
35655bf65638SKris Buschelman {
356625fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3567133cdb44SSatish Balay 
3568133cdb44SSatish Balay   PetscFunctionBegin;
3569133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3570133cdb44SSatish Balay   baij->ht_fact = fact;
3571133cdb44SSatish Balay   PetscFunctionReturn(0);
3572133cdb44SSatish Balay }
3573f2a5309cSSatish Balay 
35744a2ae208SSatish Balay #undef __FUNCT__
35754a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
35769230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3577f2a5309cSSatish Balay {
3578f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
35795fd66863SKarl Rupp 
3580f2a5309cSSatish Balay   PetscFunctionBegin;
3581f2a5309cSSatish Balay   *Ad     = a->A;
3582f2a5309cSSatish Balay   *Ao     = a->B;
3583195d93cdSBarry Smith   *colmap = a->garray;
3584f2a5309cSSatish Balay   PetscFunctionReturn(0);
3585f2a5309cSSatish Balay }
358685535b8eSBarry Smith 
358785535b8eSBarry Smith /*
358885535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
358985535b8eSBarry Smith */
359085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
359185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
359285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
359385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
359485535b8eSBarry Smith #endif
359585535b8eSBarry Smith 
359685535b8eSBarry Smith #undef __FUNCT__
359785535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
359885535b8eSBarry Smith /*@C
359985535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
360085535b8eSBarry Smith 
360185535b8eSBarry Smith   Collective on Mat
360285535b8eSBarry Smith 
360385535b8eSBarry Smith   Input Parameters:
360485535b8eSBarry Smith + mat - the matrix
360585535b8eSBarry Smith . min - number of input rows
360685535b8eSBarry Smith . im - input rows
360785535b8eSBarry Smith . nin - number of input columns
360885535b8eSBarry Smith . in - input columns
360985535b8eSBarry Smith . v - numerical values input
361085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
361185535b8eSBarry Smith 
361285535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
361385535b8eSBarry Smith 
361485535b8eSBarry Smith   Level: advanced
361585535b8eSBarry Smith 
361685535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
361785535b8eSBarry Smith @*/
361885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
361985535b8eSBarry Smith {
362085535b8eSBarry Smith   /* convert input arguments to C version */
362185535b8eSBarry Smith   Mat        mat  = *matin;
362285535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
362385535b8eSBarry Smith   InsertMode addv = *addvin;
362485535b8eSBarry Smith 
362585535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
362685535b8eSBarry Smith   const MatScalar *value;
362785535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3628ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
362985535b8eSBarry Smith   PetscErrorCode  ierr;
363085535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
363185535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3632d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
363385535b8eSBarry Smith 
363485535b8eSBarry Smith   PetscFunctionBegin;
363585535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
363626fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
363785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3638e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3639e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
364085535b8eSBarry Smith #endif
364185535b8eSBarry Smith   if (mat->assembled) {
364285535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
364385535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
364485535b8eSBarry Smith   }
364585535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
364685535b8eSBarry Smith 
364785535b8eSBarry Smith 
364885535b8eSBarry Smith   if (!barray) {
364985535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
365085535b8eSBarry Smith     baij->barray = barray;
365185535b8eSBarry Smith   }
365285535b8eSBarry Smith 
365326fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
365426fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
365526fbe8dcSKarl Rupp 
365685535b8eSBarry Smith   for (i=0; i<m; i++) {
365785535b8eSBarry Smith     if (im[i] < 0) continue;
365885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3659e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
366085535b8eSBarry Smith #endif
366185535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
366285535b8eSBarry Smith       row = im[i] - rstart;
366385535b8eSBarry Smith       for (j=0; j<n; j++) {
366485535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
366585535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
366685535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
366785535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
366885535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
366985535b8eSBarry Smith         } else { /* Here a copy is required */
367085535b8eSBarry Smith           if (roworiented) {
367185535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
367285535b8eSBarry Smith           } else {
367385535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
367485535b8eSBarry Smith           }
367585535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
367685535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
367785535b8eSBarry Smith               *barray++ = *value++;
367885535b8eSBarry Smith             }
367985535b8eSBarry Smith           }
368085535b8eSBarry Smith           barray -=bs2;
368185535b8eSBarry Smith         }
368285535b8eSBarry Smith 
368385535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
368485535b8eSBarry Smith           col  = in[j] - cstart;
368597e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
368626fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
368785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3688cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
368985535b8eSBarry Smith #endif
369085535b8eSBarry Smith         else {
369185535b8eSBarry Smith           if (mat->was_assembled) {
369285535b8eSBarry Smith             if (!baij->colmap) {
3693ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
369485535b8eSBarry Smith             }
369585535b8eSBarry Smith 
369685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
369785535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
369885535b8eSBarry Smith             { PetscInt data;
369985535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3700e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
370185535b8eSBarry Smith             }
370285535b8eSBarry Smith #else
3703e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
370485535b8eSBarry Smith #endif
370585535b8eSBarry Smith #endif
370685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
370785535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
370885535b8eSBarry Smith             col  = (col - 1)/bs;
370985535b8eSBarry Smith #else
371085535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
371185535b8eSBarry Smith #endif
371285535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3713ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
371485535b8eSBarry Smith               col  =  in[j];
371585535b8eSBarry Smith             }
371626fbe8dcSKarl Rupp           } else col = in[j];
371797e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
371885535b8eSBarry Smith         }
371985535b8eSBarry Smith       }
372085535b8eSBarry Smith     } else {
372185535b8eSBarry Smith       if (!baij->donotstash) {
372285535b8eSBarry Smith         if (roworiented) {
372385535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
372485535b8eSBarry Smith         } else {
372585535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
372685535b8eSBarry Smith         }
372785535b8eSBarry Smith       }
372885535b8eSBarry Smith     }
372985535b8eSBarry Smith   }
373085535b8eSBarry Smith 
373185535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
373285535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
373385535b8eSBarry Smith   PetscFunctionReturn(0);
373485535b8eSBarry Smith }
3735dfb205c3SBarry Smith 
3736dfb205c3SBarry Smith #undef __FUNCT__
3737dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays"
3738dfb205c3SBarry Smith /*@
3739dfb205c3SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard
3740dfb205c3SBarry Smith          CSR format the local rows.
3741dfb205c3SBarry Smith 
3742dfb205c3SBarry Smith    Collective on MPI_Comm
3743dfb205c3SBarry Smith 
3744dfb205c3SBarry Smith    Input Parameters:
3745dfb205c3SBarry Smith +  comm - MPI communicator
3746dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3747dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3748dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3749dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3750dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3751dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3752dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3753dfb205c3SBarry Smith .   i - row indices
3754dfb205c3SBarry Smith .   j - column indices
3755dfb205c3SBarry Smith -   a - matrix values
3756dfb205c3SBarry Smith 
3757dfb205c3SBarry Smith    Output Parameter:
3758dfb205c3SBarry Smith .   mat - the matrix
3759dfb205c3SBarry Smith 
3760dfb205c3SBarry Smith    Level: intermediate
3761dfb205c3SBarry Smith 
3762dfb205c3SBarry Smith    Notes:
3763dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3764dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3765dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3766dfb205c3SBarry Smith 
37673adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
37683adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
37693adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
37703adadaf3SJed Brown      with column-major ordering within blocks.
37713adadaf3SJed Brown 
3772dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3773dfb205c3SBarry Smith 
3774dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3775dfb205c3SBarry Smith 
3776dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
377769b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3778dfb205c3SBarry Smith @*/
37797087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3780dfb205c3SBarry Smith {
3781dfb205c3SBarry Smith   PetscErrorCode ierr;
3782dfb205c3SBarry Smith 
3783dfb205c3SBarry Smith   PetscFunctionBegin;
3784f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3785dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3786dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3787dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3788dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3789d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
3790dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3791d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
3792dfb205c3SBarry Smith   PetscFunctionReturn(0);
3793dfb205c3SBarry Smith }
3794