1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 614e879edeSHong Zhang PetscScalar *va, *vv; 624e879edeSHong Zhang Vec vB, vA; 634e879edeSHong Zhang const PetscScalar *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 101d71ae5a4SJacob Faibussowitsch { 1027fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1037fc3c18eSBarry Smith 1047fc3c18eSBarry Smith PetscFunctionBegin; 1059566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1069566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087fc3c18eSBarry Smith } 1097fc3c18eSBarry Smith 11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 111d71ae5a4SJacob Faibussowitsch { 1127fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1137fc3c18eSBarry Smith 1147fc3c18eSBarry Smith PetscFunctionBegin; 1159566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1169566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1187fc3c18eSBarry Smith } 1197fc3c18eSBarry Smith 120537820f0SBarry Smith /* 121537820f0SBarry Smith Local utility routine that creates a mapping from the global column 12257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 123e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 12457b952d6SSatish Balay length of colmap equals the global matrix length. 12557b952d6SSatish Balay */ 126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 127d71ae5a4SJacob Faibussowitsch { 12857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 12957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 130d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 13157b952d6SSatish Balay 132d64ed03dSBarry Smith PetscFunctionBegin; 133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 134eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 135c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 13648e59246SSatish Balay #else 1379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 138928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 13948e59246SSatish Balay #endif 1403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14157b952d6SSatish Balay } 14257b952d6SSatish Balay 143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 144a8f51744SPierre Jolivet do { \ 14580c1aa95SSatish Balay brow = row / bs; \ 1468e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1478e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1489371c9d4SSatish Balay rmax = aimax[brow]; \ 1499371c9d4SSatish Balay nrow = ailen[brow]; \ 15080c1aa95SSatish Balay bcol = col / bs; \ 1519371c9d4SSatish Balay ridx = row % bs; \ 1529371c9d4SSatish Balay cidx = col % bs; \ 1539371c9d4SSatish Balay low = 0; \ 1549371c9d4SSatish Balay high = nrow; \ 155ab26458aSBarry Smith while (high - low > 3) { \ 156ab26458aSBarry Smith t = (low + high) / 2; \ 157ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 158ab26458aSBarry Smith else low = t; \ 159ab26458aSBarry Smith } \ 160ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 16180c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 16280c1aa95SSatish Balay if (rp[_i] == bcol) { \ 16380c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 164eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 165eada6651SSatish Balay else *bap = value; \ 166ac7a638eSSatish Balay goto a_noinsert; \ 16780c1aa95SSatish Balay } \ 16880c1aa95SSatish Balay } \ 16989280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1705f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 171fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 17280c1aa95SSatish Balay N = nrow++ - 1; \ 17380c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1759566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1769566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 17780c1aa95SSatish Balay rp[_i] = bcol; \ 17880c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 179ac7a638eSSatish Balay a_noinsert:; \ 18080c1aa95SSatish Balay ailen[brow] = nrow; \ 181a8f51744SPierre Jolivet } while (0) 18257b952d6SSatish Balay 183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 184a8f51744SPierre Jolivet do { \ 185ac7a638eSSatish Balay brow = row / bs; \ 1868e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 1878e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 1889371c9d4SSatish Balay rmax = bimax[brow]; \ 1899371c9d4SSatish Balay nrow = bilen[brow]; \ 190ac7a638eSSatish Balay bcol = col / bs; \ 1919371c9d4SSatish Balay ridx = row % bs; \ 1929371c9d4SSatish Balay cidx = col % bs; \ 1939371c9d4SSatish Balay low = 0; \ 1949371c9d4SSatish Balay high = nrow; \ 195ac7a638eSSatish Balay while (high - low > 3) { \ 196ac7a638eSSatish Balay t = (low + high) / 2; \ 197ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 198ac7a638eSSatish Balay else low = t; \ 199ac7a638eSSatish Balay } \ 200ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 201ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 202ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 203ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 204ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 205ac7a638eSSatish Balay else *bap = value; \ 206ac7a638eSSatish Balay goto b_noinsert; \ 207ac7a638eSSatish Balay } \ 208ac7a638eSSatish Balay } \ 20989280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2105f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 211fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 212ac7a638eSSatish Balay N = nrow++ - 1; \ 213ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2149566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2159566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 217ac7a638eSSatish Balay rp[_i] = bcol; \ 218ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 219ac7a638eSSatish Balay b_noinsert:; \ 220ac7a638eSSatish Balay bilen[brow] = nrow; \ 221a8f51744SPierre Jolivet } while (0) 222ac7a638eSSatish Balay 223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 224d71ae5a4SJacob Faibussowitsch { 22557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 22693fea6afSBarry Smith MatScalar value; 227ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 228b24ad042SBarry Smith PetscInt i, j, row, col; 229d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 230d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 231d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 23257b952d6SSatish Balay 233eada6651SSatish Balay /* Some Variables required in the macro */ 23480c1aa95SSatish Balay Mat A = baij->A; 23580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 236b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2373eda8832SBarry Smith MatScalar *aa = a->a; 238ac7a638eSSatish Balay 239ac7a638eSSatish Balay Mat B = baij->B; 240ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 241b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2423eda8832SBarry Smith MatScalar *ba = b->a; 243ac7a638eSSatish Balay 244b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 245b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2463eda8832SBarry Smith MatScalar *ap, *bap; 24780c1aa95SSatish Balay 248d64ed03dSBarry Smith PetscFunctionBegin; 24957b952d6SSatish Balay for (i = 0; i < m; i++) { 2505ef9f2a5SBarry Smith if (im[i] < 0) continue; 2515f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 25257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 25357b952d6SSatish Balay row = im[i] - rstart_orig; 25457b952d6SSatish Balay for (j = 0; j < n; j++) { 25557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 25657b952d6SSatish Balay col = in[j] - cstart_orig; 257db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 258db4deed7SKarl Rupp else value = v[i + j * m]; 259d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 260f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 261f7d195e4SLawrence Mitchell continue; 262f7d195e4SLawrence Mitchell } else { 263f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 26457b952d6SSatish Balay if (mat->was_assembled) { 26548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 267eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 268bba1ac68SSatish Balay col = col - 1; 26948e59246SSatish Balay #else 270bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 27148e59246SSatish Balay #endif 272f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2739566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2748295de27SSatish Balay col = in[j]; 2759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2769bf004c3SSatish Balay B = baij->B; 2779bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2789371c9d4SSatish Balay bimax = b->imax; 2799371c9d4SSatish Balay bi = b->i; 2809371c9d4SSatish Balay bilen = b->ilen; 2819371c9d4SSatish Balay bj = b->j; 2829bf004c3SSatish Balay ba = b->a; 283f7d195e4SLawrence Mitchell } else { 284f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 285f7d195e4SLawrence Mitchell col += in[j] % bs; 286f7d195e4SLawrence Mitchell } 2878295de27SSatish Balay } else col = in[j]; 288db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 289db4deed7SKarl Rupp else value = v[i + j * m]; 290d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2919566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 29257b952d6SSatish Balay } 29357b952d6SSatish Balay } 294d64ed03dSBarry Smith } else { 2955f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 29690f02eecSBarry Smith if (!baij->donotstash) { 2975080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 298ff2fd236SBarry Smith if (roworiented) { 2999566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 300ff2fd236SBarry Smith } else { 3019566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 30257b952d6SSatish Balay } 30357b952d6SSatish Balay } 30457b952d6SSatish Balay } 30590f02eecSBarry Smith } 3063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30757b952d6SSatish Balay } 30857b952d6SSatish Balay 309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 310d71ae5a4SJacob Faibussowitsch { 311880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3128ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 313880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3148ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 315880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 316880c6e6aSBarry Smith const PetscScalar *value = v; 317880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 318880c6e6aSBarry Smith 319880c6e6aSBarry Smith PetscFunctionBegin; 320880c6e6aSBarry Smith rp = aj + ai[row]; 321880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 322880c6e6aSBarry Smith rmax = imax[row]; 323880c6e6aSBarry Smith nrow = ailen[row]; 3248ab52850SBarry Smith value = v; 3258ab52850SBarry Smith low = 0; 3268ab52850SBarry Smith high = nrow; 327880c6e6aSBarry Smith while (high - low > 7) { 328880c6e6aSBarry Smith t = (low + high) / 2; 329880c6e6aSBarry Smith if (rp[t] > col) high = t; 330880c6e6aSBarry Smith else low = t; 331880c6e6aSBarry Smith } 332880c6e6aSBarry Smith for (i = low; i < high; i++) { 333880c6e6aSBarry Smith if (rp[i] > col) break; 334880c6e6aSBarry Smith if (rp[i] == col) { 335880c6e6aSBarry Smith bap = ap + bs2 * i; 336880c6e6aSBarry Smith if (roworiented) { 337880c6e6aSBarry Smith if (is == ADD_VALUES) { 3388ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 339ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 340880c6e6aSBarry Smith } 341880c6e6aSBarry Smith } else { 3428ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 343ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 344880c6e6aSBarry Smith } 345880c6e6aSBarry Smith } 346880c6e6aSBarry Smith } else { 347880c6e6aSBarry Smith if (is == ADD_VALUES) { 3488ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 349ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 350880c6e6aSBarry Smith bap += bs; 351880c6e6aSBarry Smith } 352880c6e6aSBarry Smith } else { 3538ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 354ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 355880c6e6aSBarry Smith bap += bs; 356880c6e6aSBarry Smith } 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith goto noinsert2; 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3635f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 364880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3659371c9d4SSatish Balay N = nrow++ - 1; 3669371c9d4SSatish Balay high++; 367880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3689566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3699566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 370880c6e6aSBarry Smith rp[i] = col; 371880c6e6aSBarry Smith bap = ap + bs2 * i; 372880c6e6aSBarry Smith if (roworiented) { 3738ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 374ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith } else { 3778ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 378ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 379880c6e6aSBarry Smith } 380880c6e6aSBarry Smith } 381880c6e6aSBarry Smith noinsert2:; 382880c6e6aSBarry Smith ailen[row] = nrow; 3833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384880c6e6aSBarry Smith } 385880c6e6aSBarry Smith 3868ab52850SBarry Smith /* 3878ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3888ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3898ab52850SBarry Smith */ 39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 391d71ae5a4SJacob Faibussowitsch { 392ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 393dd6ea824SBarry Smith const PetscScalar *value; 394f15d580aSBarry Smith MatScalar *barray = baij->barray; 395ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 396899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 397899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 398d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 399ab26458aSBarry Smith 400b16ae2b1SBarry Smith PetscFunctionBegin; 40130793edcSSatish Balay if (!barray) { 4029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 40382502324SSatish Balay baij->barray = barray; 40430793edcSSatish Balay } 40530793edcSSatish Balay 40626fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 40726fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 40826fbe8dcSKarl Rupp 409ab26458aSBarry Smith for (i = 0; i < m; i++) { 4105ef9f2a5SBarry Smith if (im[i] < 0) continue; 4116bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 412ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 413ab26458aSBarry Smith row = im[i] - rstart; 414ab26458aSBarry Smith for (j = 0; j < n; j++) { 41515b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 41615b57d14SSatish Balay if ((roworiented) && (n == 1)) { 417f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 41815b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 419f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 42015b57d14SSatish Balay } else { /* Here a copy is required */ 421ab26458aSBarry Smith if (roworiented) { 42253ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 423ab26458aSBarry Smith } else { 42453ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 425abef11f7SSatish Balay } 42653ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 42726fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 42853ef36baSBarry Smith barray += bs; 42947513183SBarry Smith } 43030793edcSSatish Balay barray -= bs2; 43115b57d14SSatish Balay } 432abef11f7SSatish Balay 433abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 434abef11f7SSatish Balay col = in[j] - cstart; 4359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 436f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 437f7d195e4SLawrence Mitchell continue; 438f7d195e4SLawrence Mitchell } else { 439f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 440ab26458aSBarry Smith if (mat->was_assembled) { 44148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 442a5eb4965SSatish Balay 4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 444aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4459371c9d4SSatish Balay { 4469371c9d4SSatish Balay PetscInt data; 447eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 44808401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 449fa46199cSSatish Balay } 45048e59246SSatish Balay #else 45108401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 452a5eb4965SSatish Balay #endif 45348e59246SSatish Balay #endif 454aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 455eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 456fa46199cSSatish Balay col = (col - 1) / bs; 45748e59246SSatish Balay #else 458a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 45948e59246SSatish Balay #endif 460f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4619566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 462ab26458aSBarry Smith col = in[j]; 4635f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 464db4deed7SKarl Rupp } else col = in[j]; 4659566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 466ab26458aSBarry Smith } 467ab26458aSBarry Smith } 468d64ed03dSBarry Smith } else { 4695f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 470ab26458aSBarry Smith if (!baij->donotstash) { 471ff2fd236SBarry Smith if (roworiented) { 4729566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 473ff2fd236SBarry Smith } else { 4749566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 475ff2fd236SBarry Smith } 476abef11f7SSatish Balay } 477ab26458aSBarry Smith } 478ab26458aSBarry Smith } 4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480ab26458aSBarry Smith } 4816fa18ffdSBarry Smith 4820bdbc534SSatish Balay #define HASH_KEY 0.6180339887 483b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 484b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 485b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 48666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 487d71ae5a4SJacob Faibussowitsch { 4880bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 489ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 490b24ad042SBarry Smith PetscInt i, j, row, col; 491d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 492d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 493d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 494329f5518SBarry Smith PetscReal tmp; 4953eda8832SBarry Smith MatScalar **HD = baij->hd, value; 496b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4970bdbc534SSatish Balay 4980bdbc534SSatish Balay PetscFunctionBegin; 4990bdbc534SSatish Balay for (i = 0; i < m; i++) { 50076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5015f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5025f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50376bd3646SJed Brown } 5040bdbc534SSatish Balay row = im[i]; 505c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5060bdbc534SSatish Balay for (j = 0; j < n; j++) { 5070bdbc534SSatish Balay col = in[j]; 508db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 509db4deed7SKarl Rupp else value = v[i + j * m]; 510b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 511c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 512c2760754SSatish Balay h1 = HASH(size, key, tmp); 5130bdbc534SSatish Balay 514c2760754SSatish Balay idx = h1; 51576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 516187ce0cbSSatish Balay insert_ct++; 517187ce0cbSSatish Balay total_ct++; 518187ce0cbSSatish Balay if (HT[idx] != key) { 519fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 520187ce0cbSSatish Balay if (idx == size) { 521fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5225f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 523187ce0cbSSatish Balay } 524187ce0cbSSatish Balay } 52576bd3646SJed Brown } else if (HT[idx] != key) { 526fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 527c2760754SSatish Balay if (idx == size) { 528fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5295f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 530c2760754SSatish Balay } 531c2760754SSatish Balay } 532c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 533c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 534c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5350bdbc534SSatish Balay } 53626fbe8dcSKarl Rupp } else if (!baij->donotstash) { 537ff2fd236SBarry Smith if (roworiented) { 5389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 539ff2fd236SBarry Smith } else { 5409566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5410bdbc534SSatish Balay } 5420bdbc534SSatish Balay } 5430bdbc534SSatish Balay } 54476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 545abf3b562SBarry Smith baij->ht_total_ct += total_ct; 546abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 54776bd3646SJed Brown } 5483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5490bdbc534SSatish Balay } 5500bdbc534SSatish Balay 55166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 552d71ae5a4SJacob Faibussowitsch { 5530bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 554ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 555b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 556899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 557d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 558b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 559329f5518SBarry Smith PetscReal tmp; 5603eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 561dd6ea824SBarry Smith const PetscScalar *v_t, *value; 562b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5630bdbc534SSatish Balay 564d0a41580SSatish Balay PetscFunctionBegin; 56526fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 56626fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 56726fbe8dcSKarl Rupp 5680bdbc534SSatish Balay for (i = 0; i < m; i++) { 56976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5705f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5715f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57276bd3646SJed Brown } 5730bdbc534SSatish Balay row = im[i]; 574ab715e2cSSatish Balay v_t = v + i * nbs2; 575c2760754SSatish Balay if (row >= rstart && row < rend) { 5760bdbc534SSatish Balay for (j = 0; j < n; j++) { 5770bdbc534SSatish Balay col = in[j]; 5780bdbc534SSatish Balay 5790bdbc534SSatish Balay /* Look up into the Hash Table */ 580c2760754SSatish Balay key = row * Nbs + col + 1; 581c2760754SSatish Balay h1 = HASH(size, key, tmp); 5820bdbc534SSatish Balay 583c2760754SSatish Balay idx = h1; 58476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 585187ce0cbSSatish Balay total_ct++; 586187ce0cbSSatish Balay insert_ct++; 587187ce0cbSSatish Balay if (HT[idx] != key) { 588fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 589187ce0cbSSatish Balay if (idx == size) { 590fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5915f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 592187ce0cbSSatish Balay } 593187ce0cbSSatish Balay } 59476bd3646SJed Brown } else if (HT[idx] != key) { 595fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 596c2760754SSatish Balay if (idx == size) { 597fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5985f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 599c2760754SSatish Balay } 600c2760754SSatish Balay } 601c2760754SSatish Balay baij_a = HD[idx]; 6020bdbc534SSatish Balay if (roworiented) { 603c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 604187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 605187ce0cbSSatish Balay value = v_t; 606187ce0cbSSatish Balay v_t += bs; 607fef45726SSatish Balay if (addv == ADD_VALUES) { 608c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 609ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 610b4cc0f5aSSatish Balay } 611fef45726SSatish Balay } else { 612c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 613ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 614fef45726SSatish Balay } 615fef45726SSatish Balay } 6160bdbc534SSatish Balay } else { 6170bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 618fef45726SSatish Balay if (addv == ADD_VALUES) { 619b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 620ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 621fef45726SSatish Balay } 622fef45726SSatish Balay } else { 623fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 624ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 625b4cc0f5aSSatish Balay } 6260bdbc534SSatish Balay } 6270bdbc534SSatish Balay } 6280bdbc534SSatish Balay } 6290bdbc534SSatish Balay } else { 6300bdbc534SSatish Balay if (!baij->donotstash) { 6310bdbc534SSatish Balay if (roworiented) { 6329566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6330bdbc534SSatish Balay } else { 6349566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6350bdbc534SSatish Balay } 6360bdbc534SSatish Balay } 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 63976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 640abf3b562SBarry Smith baij->ht_total_ct += total_ct; 641abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64276bd3646SJed Brown } 6433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6440bdbc534SSatish Balay } 645133cdb44SSatish Balay 64666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 647d71ae5a4SJacob Faibussowitsch { 648d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 649d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 650d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 651d6de1c52SSatish Balay 652133cdb44SSatish Balay PetscFunctionBegin; 653d6de1c52SSatish Balay for (i = 0; i < m; i++) { 65454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 65554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 656d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 657d6de1c52SSatish Balay row = idxm[i] - bsrstart; 658d6de1c52SSatish Balay for (j = 0; j < n; j++) { 65954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 661d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 662d6de1c52SSatish Balay col = idxn[j] - bscstart; 6639566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 664d64ed03dSBarry Smith } else { 66548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 666aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 667eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 668fa46199cSSatish Balay data--; 66948e59246SSatish Balay #else 67048e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67148e59246SSatish Balay #endif 67248e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 673d9d09a02SSatish Balay else { 67448e59246SSatish Balay col = data + idxn[j] % bs; 6759566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 676d6de1c52SSatish Balay } 677d6de1c52SSatish Balay } 678d6de1c52SSatish Balay } 679f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 680d6de1c52SSatish Balay } 6813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay 68466976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 685d71ae5a4SJacob Faibussowitsch { 686d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 687d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 688d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 689329f5518SBarry Smith PetscReal sum = 0.0; 6903eda8832SBarry Smith MatScalar *v; 691d6de1c52SSatish Balay 692d64ed03dSBarry Smith PetscFunctionBegin; 693d6de1c52SSatish Balay if (baij->size == 1) { 6949566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 695d6de1c52SSatish Balay } else { 696d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 697d6de1c52SSatish Balay v = amat->a; 6988a62d963SHong Zhang nz = amat->nz * bs2; 6998a62d963SHong Zhang for (i = 0; i < nz; i++) { 7009371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7019371c9d4SSatish Balay v++; 702d6de1c52SSatish Balay } 703d6de1c52SSatish Balay v = bmat->a; 7048a62d963SHong Zhang nz = bmat->nz * bs2; 7058a62d963SHong Zhang for (i = 0; i < nz; i++) { 7069371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7079371c9d4SSatish Balay v++; 708d6de1c52SSatish Balay } 7091c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7108f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7118a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7128a62d963SHong Zhang PetscReal *tmp, *tmp2; 713899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7149566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7169371c9d4SSatish Balay v = amat->a; 7179371c9d4SSatish Balay jj = amat->j; 7188a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7198a62d963SHong Zhang for (j = 0; j < bs; j++) { 7208a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7218a62d963SHong Zhang for (row = 0; row < bs; row++) { 7229371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7239371c9d4SSatish Balay v++; 7248a62d963SHong Zhang } 7258a62d963SHong Zhang } 7268a62d963SHong Zhang jj++; 7278a62d963SHong Zhang } 7289371c9d4SSatish Balay v = bmat->a; 7299371c9d4SSatish Balay jj = bmat->j; 7308a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7318a62d963SHong Zhang for (j = 0; j < bs; j++) { 7328a62d963SHong Zhang col = bs * garray[*jj] + j; 7338a62d963SHong Zhang for (row = 0; row < bs; row++) { 7349371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7359371c9d4SSatish Balay v++; 7368a62d963SHong Zhang } 7378a62d963SHong Zhang } 7388a62d963SHong Zhang jj++; 7398a62d963SHong Zhang } 7401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7418a62d963SHong Zhang *nrm = 0.0; 742d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7438a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7448a62d963SHong Zhang } 7459566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7469566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7478a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 748577dd1f9SKris Buschelman PetscReal *sums; 7499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7508a62d963SHong Zhang sum = 0.0; 7518a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7528a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7538a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7548a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7558a62d963SHong Zhang for (i = 0; i < nz; i++) { 7568a62d963SHong Zhang for (col = 0; col < bs; col++) { 7578a62d963SHong Zhang for (row = 0; row < bs; row++) { 7589371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7599371c9d4SSatish Balay v++; 7608a62d963SHong Zhang } 7618a62d963SHong Zhang } 7628a62d963SHong Zhang } 7638a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7648a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7658a62d963SHong Zhang for (i = 0; i < nz; i++) { 7668a62d963SHong Zhang for (col = 0; col < bs; col++) { 7678a62d963SHong Zhang for (row = 0; row < bs; row++) { 7689371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7699371c9d4SSatish Balay v++; 7708a62d963SHong Zhang } 7718a62d963SHong Zhang } 7728a62d963SHong Zhang } 7738a62d963SHong Zhang for (row = 0; row < bs; row++) { 7748a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7758a62d963SHong Zhang } 7768a62d963SHong Zhang } 7771c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7789566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 779ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 780d64ed03dSBarry Smith } 7813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782d6de1c52SSatish Balay } 78357b952d6SSatish Balay 784fef45726SSatish Balay /* 785fef45726SSatish Balay Creates the hash table, and sets the table 786fef45726SSatish Balay This table is created only once. 787fef45726SSatish Balay If new entried need to be added to the matrix 788fef45726SSatish Balay then the hash table has to be destroyed and 789fef45726SSatish Balay recreated. 790fef45726SSatish Balay */ 79166976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 792d71ae5a4SJacob Faibussowitsch { 793596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 794596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 795596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 796b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 797fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 798899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 799b24ad042SBarry Smith PetscInt *HT, key; 8003eda8832SBarry Smith MatScalar **HD; 801329f5518SBarry Smith PetscReal tmp; 8026cf91177SBarry Smith #if defined(PETSC_USE_INFO) 803b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8044a15367fSSatish Balay #endif 805fef45726SSatish Balay 806d64ed03dSBarry Smith PetscFunctionBegin; 8073ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 808fef45726SSatish Balay 809fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 810fca92195SBarry Smith ht_size = baij->ht_size; 8110bdbc534SSatish Balay 812fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8139566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 814b9e4cc15SSatish Balay HD = baij->hd; 815a07cd24cSSatish Balay HT = baij->ht; 816b9e4cc15SSatish Balay 817596b8d2eSBarry Smith /* Loop Over A */ 8180bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 819596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8200bdbc534SSatish Balay row = i + rstart; 8210bdbc534SSatish Balay col = aj[j] + cstart; 822596b8d2eSBarry Smith 823187ce0cbSSatish Balay key = row * Nbs + col + 1; 824fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 825fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 826fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 827fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 828fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 829596b8d2eSBarry Smith break; 8306cf91177SBarry Smith #if defined(PETSC_USE_INFO) 831187ce0cbSSatish Balay } else { 832187ce0cbSSatish Balay ct++; 833187ce0cbSSatish Balay #endif 834596b8d2eSBarry Smith } 835187ce0cbSSatish Balay } 8366cf91177SBarry Smith #if defined(PETSC_USE_INFO) 837187ce0cbSSatish Balay if (k > max) max = k; 838187ce0cbSSatish Balay #endif 839596b8d2eSBarry Smith } 840596b8d2eSBarry Smith } 841596b8d2eSBarry Smith /* Loop Over B */ 8420bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 843596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8440bdbc534SSatish Balay row = i + rstart; 8450bdbc534SSatish Balay col = garray[bj[j]]; 846187ce0cbSSatish Balay key = row * Nbs + col + 1; 847fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 848fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 849fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 850fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 851fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 852596b8d2eSBarry Smith break; 8536cf91177SBarry Smith #if defined(PETSC_USE_INFO) 854187ce0cbSSatish Balay } else { 855187ce0cbSSatish Balay ct++; 856187ce0cbSSatish Balay #endif 857596b8d2eSBarry Smith } 858187ce0cbSSatish Balay } 8596cf91177SBarry Smith #if defined(PETSC_USE_INFO) 860187ce0cbSSatish Balay if (k > max) max = k; 861187ce0cbSSatish Balay #endif 862596b8d2eSBarry Smith } 863596b8d2eSBarry Smith } 864596b8d2eSBarry Smith 865596b8d2eSBarry Smith /* Print Summary */ 8666cf91177SBarry Smith #if defined(PETSC_USE_INFO) 867fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 86826fbe8dcSKarl Rupp if (HT[i]) j++; 869c38d4ed2SBarry Smith } 8709566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 871187ce0cbSSatish Balay #endif 8723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 873596b8d2eSBarry Smith } 87457b952d6SSatish Balay 87566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 876d71ae5a4SJacob Faibussowitsch { 877bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 878b24ad042SBarry Smith PetscInt nstash, reallocs; 879bbb85fb3SSatish Balay 880bbb85fb3SSatish Balay PetscFunctionBegin; 8813ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 882bbb85fb3SSatish Balay 8839566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8849566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8859566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 890bbb85fb3SSatish Balay } 891bbb85fb3SSatish Balay 89266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 893d71ae5a4SJacob Faibussowitsch { 894bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 89591c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 896b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 897e44c0bd4SBarry Smith PetscInt *row, *col; 898ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 8993eda8832SBarry Smith MatScalar *val; 900b24ad042SBarry Smith PetscMPIInt n; 901bbb85fb3SSatish Balay 902bbb85fb3SSatish Balay PetscFunctionBegin; 9035fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9044cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 905a2d1c673SSatish Balay while (1) { 9069566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 907a2d1c673SSatish Balay if (!flg) break; 908a2d1c673SSatish Balay 909bbb85fb3SSatish Balay for (i = 0; i < n;) { 910bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 91226fbe8dcSKarl Rupp if (row[j] != rstart) break; 91326fbe8dcSKarl Rupp } 914bbb85fb3SSatish Balay if (j < n) ncols = j - i; 915bbb85fb3SSatish Balay else ncols = n - i; 916bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9179566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 918bbb85fb3SSatish Balay i = j; 919bbb85fb3SSatish Balay } 920bbb85fb3SSatish Balay } 9219566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 922a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9235e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 924a2d1c673SSatish Balay restore the original flags */ 925a2d1c673SSatish Balay r1 = baij->roworiented; 926a2d1c673SSatish Balay r2 = a->roworiented; 92791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 92826fbe8dcSKarl Rupp 9297c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9307c922b88SBarry Smith a->roworiented = PETSC_FALSE; 931f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 932a2d1c673SSatish Balay while (1) { 9339566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 934a2d1c673SSatish Balay if (!flg) break; 935a2d1c673SSatish Balay 936a2d1c673SSatish Balay for (i = 0; i < n;) { 937a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 93826fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 93926fbe8dcSKarl Rupp if (row[j] != rstart) break; 94026fbe8dcSKarl Rupp } 941a2d1c673SSatish Balay if (j < n) ncols = j - i; 942a2d1c673SSatish Balay else ncols = n - i; 9439566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 944a2d1c673SSatish Balay i = j; 945a2d1c673SSatish Balay } 946a2d1c673SSatish Balay } 9479566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 94826fbe8dcSKarl Rupp 949a2d1c673SSatish Balay baij->roworiented = r1; 950a2d1c673SSatish Balay a->roworiented = r2; 9515e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 9549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 956bbb85fb3SSatish Balay 957bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9586aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 959bbb85fb3SSatish Balay /* 960bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 961bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 962bbb85fb3SSatish Balay */ 963bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9645f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 96548a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 966bbb85fb3SSatish Balay } 967bbb85fb3SSatish Balay 96848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 971bbb85fb3SSatish Balay 9726cf91177SBarry Smith #if defined(PETSC_USE_INFO) 973bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9749566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 97526fbe8dcSKarl Rupp 976bbb85fb3SSatish Balay baij->ht_total_ct = 0; 977bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 978bbb85fb3SSatish Balay } 979bbb85fb3SSatish Balay #endif 980bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9819566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 98226fbe8dcSKarl Rupp 983bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 984bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 985bbb85fb3SSatish Balay } 986bbb85fb3SSatish Balay 9879566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 98826fbe8dcSKarl Rupp 989f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9904f9cfa9eSBarry Smith 9914f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 992f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 993e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 9941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 995e56f5c9eSBarry Smith } 9963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 997bbb85fb3SSatish Balay } 99857b952d6SSatish Balay 9997da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10009804daf3SBarry Smith #include <petscdraw.h> 1001d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1002d71ae5a4SJacob Faibussowitsch { 100357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10047da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1005d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1006ace3abfcSBarry Smith PetscBool iascii, isdraw; 1007b0a32e0cSBarry Smith PetscViewer sviewer; 1008f3ef73ceSBarry Smith PetscViewerFormat format; 100957b952d6SSatish Balay 1010d64ed03dSBarry Smith PetscFunctionBegin; 10119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 101332077d6dSBarry Smith if (iascii) { 10149566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1015456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10164e220ebcSLois Curfman McInnes MatInfo info; 10179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10189566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10209371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10219371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10229566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10249566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10269566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10299566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1031fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103657b952d6SSatish Balay } 103757b952d6SSatish Balay } 103857b952d6SSatish Balay 10390f5bd95cSBarry Smith if (isdraw) { 1040b0a32e0cSBarry Smith PetscDraw draw; 1041ace3abfcSBarry Smith PetscBool isnull; 10429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 104557b952d6SSatish Balay } 104657b952d6SSatish Balay 10477da1fb6eSBarry Smith { 104857b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 104957b952d6SSatish Balay Mat A; 105057b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1051d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10523eda8832SBarry Smith MatScalar *a; 10533e219373SBarry Smith const char *matname; 105457b952d6SSatish Balay 1055f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1056f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10579566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1058dd400576SPatrick Sanan if (rank == 0) { 10599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1060d64ed03dSBarry Smith } else { 10619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 106257b952d6SSatish Balay } 10639566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10649566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10659566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 106657b952d6SSatish Balay 106757b952d6SSatish Balay /* copy over the A part */ 106857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10699371c9d4SSatish Balay ai = Aloc->i; 10709371c9d4SSatish Balay aj = Aloc->j; 10719371c9d4SSatish Balay a = Aloc->a; 10729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 107357b952d6SSatish Balay 107457b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1075899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 107626fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 107757b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1078899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 107957b952d6SSatish Balay for (k = 0; k < bs; k++) { 10809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10819371c9d4SSatish Balay col++; 10829371c9d4SSatish Balay a += bs; 108357b952d6SSatish Balay } 108457b952d6SSatish Balay } 108557b952d6SSatish Balay } 108657b952d6SSatish Balay /* copy over the B part */ 108757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10889371c9d4SSatish Balay ai = Aloc->i; 10899371c9d4SSatish Balay aj = Aloc->j; 10909371c9d4SSatish Balay a = Aloc->a; 109157b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1092899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 109326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 109457b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 109557b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 109657b952d6SSatish Balay for (k = 0; k < bs; k++) { 10979566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10989371c9d4SSatish Balay col++; 10999371c9d4SSatish Balay a += bs; 110057b952d6SSatish Balay } 110157b952d6SSatish Balay } 110257b952d6SSatish Balay } 11039566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 110655843e3eSBarry Smith /* 110755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1108b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 110955843e3eSBarry Smith */ 11109566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111123a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1112dd400576SPatrick Sanan if (rank == 0) { 1113f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1114f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 111557b952d6SSatish Balay } 11169566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11179566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 111857b952d6SSatish Balay } 11193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112057b952d6SSatish Balay } 112157b952d6SSatish Balay 1122618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1123d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1124d71ae5a4SJacob Faibussowitsch { 1125b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1126b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1127b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1128b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 112917a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 113017a3732bSBarry Smith PetscInt64 nz, hnz; 1131b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1132b51a4376SLisandro Dalcin PetscScalar *matvals; 113317a3732bSBarry Smith PetscMPIInt rank; 1134660746e0SBarry Smith 1135660746e0SBarry Smith PetscFunctionBegin; 11369566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1137b51a4376SLisandro Dalcin 1138b51a4376SLisandro Dalcin M = mat->rmap->N; 1139b51a4376SLisandro Dalcin N = mat->cmap->N; 1140b51a4376SLisandro Dalcin m = mat->rmap->n; 1141b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1142b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1143b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1144b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1145b51a4376SLisandro Dalcin 1146b51a4376SLisandro Dalcin /* write matrix header */ 1147660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11489371c9d4SSatish Balay header[1] = M; 11499371c9d4SSatish Balay header[2] = N; 115017a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115117a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 115217a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1154660746e0SBarry Smith 1155b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1157b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11589371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11599566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11609566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1161660746e0SBarry Smith 1162b51a4376SLisandro Dalcin /* fill in and store column indices */ 11639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1164b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1165b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1166b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1167b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11689371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1169660746e0SBarry Smith } 1170b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11719371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1172b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11739371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1174660746e0SBarry Smith } 1175660746e0SBarry Smith } 117617a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 11779566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11789566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1179660746e0SBarry Smith 1180b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1182b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1183b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1184b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1185b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11869371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1187660746e0SBarry Smith } 1188b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11899371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1190b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11919371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1192660746e0SBarry Smith } 1193b51a4376SLisandro Dalcin } 11949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 11959566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1196660746e0SBarry Smith 1197b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 11989566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 11993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1200660746e0SBarry Smith } 1201660746e0SBarry Smith 1202d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1203d71ae5a4SJacob Faibussowitsch { 1204ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 120557b952d6SSatish Balay 1206d64ed03dSBarry Smith PetscFunctionBegin; 12079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1211660746e0SBarry Smith if (iascii || isdraw || issocket) { 12129566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12131baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 121557b952d6SSatish Balay } 121657b952d6SSatish Balay 121766976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1218d71ae5a4SJacob Faibussowitsch { 1219cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1220b24ad042SBarry Smith PetscInt nt; 1221cee3aa6bSSatish Balay 1222d64ed03dSBarry Smith PetscFunctionBegin; 12239566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12245f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12259566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1226da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12279566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12289566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12309566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1232cee3aa6bSSatish Balay } 1233cee3aa6bSSatish Balay 123466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1235d71ae5a4SJacob Faibussowitsch { 1236cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1237d64ed03dSBarry Smith 1238d64ed03dSBarry Smith PetscFunctionBegin; 12399566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12409566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12419566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12429566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1244cee3aa6bSSatish Balay } 1245cee3aa6bSSatish Balay 124666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1247d71ae5a4SJacob Faibussowitsch { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1249cee3aa6bSSatish Balay 1250d64ed03dSBarry Smith PetscFunctionBegin; 1251cee3aa6bSSatish Balay /* do nondiagonal part */ 12529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1253cee3aa6bSSatish Balay /* do local part */ 12549566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1255e4a140f6SJunchao Zhang /* add partial results together */ 12569566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12579566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1259cee3aa6bSSatish Balay } 1260cee3aa6bSSatish Balay 126166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1262d71ae5a4SJacob Faibussowitsch { 1263cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1264cee3aa6bSSatish Balay 1265d64ed03dSBarry Smith PetscFunctionBegin; 1266cee3aa6bSSatish Balay /* do nondiagonal part */ 12679566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1268cee3aa6bSSatish Balay /* do local part */ 12699566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1270e4a140f6SJunchao Zhang /* add partial results together */ 12719566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12729566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1274cee3aa6bSSatish Balay } 1275cee3aa6bSSatish Balay 1276cee3aa6bSSatish Balay /* 1277cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1278cee3aa6bSSatish Balay diagonal block 1279cee3aa6bSSatish Balay */ 128066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1281d71ae5a4SJacob Faibussowitsch { 1282d64ed03dSBarry Smith PetscFunctionBegin; 12835f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12849566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1286cee3aa6bSSatish Balay } 1287cee3aa6bSSatish Balay 128866976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1289d71ae5a4SJacob Faibussowitsch { 1290cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1291d64ed03dSBarry Smith 1292d64ed03dSBarry Smith PetscFunctionBegin; 12939566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12949566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296cee3aa6bSSatish Balay } 1297026e39d0SSatish Balay 1298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1299d71ae5a4SJacob Faibussowitsch { 1300acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130187828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1302d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1303d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1304899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1305acdf5bf4SSatish Balay 1306d64ed03dSBarry Smith PetscFunctionBegin; 13075f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13085f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1309acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1310acdf5bf4SSatish Balay 1311acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1312acdf5bf4SSatish Balay /* 1313acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1314acdf5bf4SSatish Balay */ 1315acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1316b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1317bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1318acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 131926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1320acdf5bf4SSatish Balay } 13219566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1322acdf5bf4SSatish Balay } 1323d9d09a02SSatish Balay lrow = row - brstart; 1324acdf5bf4SSatish Balay 13259371c9d4SSatish Balay pvA = &vworkA; 13269371c9d4SSatish Balay pcA = &cworkA; 13279371c9d4SSatish Balay pvB = &vworkB; 13289371c9d4SSatish Balay pcB = &cworkB; 13299371c9d4SSatish Balay if (!v) { 13309371c9d4SSatish Balay pvA = NULL; 13319371c9d4SSatish Balay pvB = NULL; 13329371c9d4SSatish Balay } 13339371c9d4SSatish Balay if (!idx) { 13349371c9d4SSatish Balay pcA = NULL; 13359371c9d4SSatish Balay if (!v) pcB = NULL; 13369371c9d4SSatish Balay } 13379566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13389566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1339acdf5bf4SSatish Balay nztot = nzA + nzB; 1340acdf5bf4SSatish Balay 1341acdf5bf4SSatish Balay cmap = mat->garray; 1342acdf5bf4SSatish Balay if (v || idx) { 1343acdf5bf4SSatish Balay if (nztot) { 1344acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1345b24ad042SBarry Smith PetscInt imark = -1; 1346acdf5bf4SSatish Balay if (v) { 1347acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1348acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1349d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1350acdf5bf4SSatish Balay else break; 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay imark = i; 1353acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1354acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1355acdf5bf4SSatish Balay } 1356acdf5bf4SSatish Balay if (idx) { 1357acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1358acdf5bf4SSatish Balay if (imark > -1) { 1359ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1360acdf5bf4SSatish Balay } else { 1361acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136226fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1363acdf5bf4SSatish Balay else break; 1364acdf5bf4SSatish Balay } 1365acdf5bf4SSatish Balay imark = i; 1366acdf5bf4SSatish Balay } 1367d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1368d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1369acdf5bf4SSatish Balay } 1370d64ed03dSBarry Smith } else { 1371f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1372f4259b30SLisandro Dalcin if (v) *v = NULL; 1373d212a18eSSatish Balay } 1374acdf5bf4SSatish Balay } 1375acdf5bf4SSatish Balay *nz = nztot; 13769566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13779566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1379acdf5bf4SSatish Balay } 1380acdf5bf4SSatish Balay 1381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1382d71ae5a4SJacob Faibussowitsch { 1383acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1384d64ed03dSBarry Smith 1385d64ed03dSBarry Smith PetscFunctionBegin; 13865f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1387acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1389acdf5bf4SSatish Balay } 1390acdf5bf4SSatish Balay 139166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1392d71ae5a4SJacob Faibussowitsch { 139358667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1394d64ed03dSBarry Smith 1395d64ed03dSBarry Smith PetscFunctionBegin; 13969566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13979566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 13983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139958667388SSatish Balay } 14000ac07820SSatish Balay 140166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1402d71ae5a4SJacob Faibussowitsch { 14034e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14044e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14053966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14060ac07820SSatish Balay 1407d64ed03dSBarry Smith PetscFunctionBegin; 1408d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 140926fbe8dcSKarl Rupp 14109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141126fbe8dcSKarl Rupp 14129371c9d4SSatish Balay isend[0] = info->nz_used; 14139371c9d4SSatish Balay isend[1] = info->nz_allocated; 14149371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14159371c9d4SSatish Balay isend[3] = info->memory; 14169371c9d4SSatish Balay isend[4] = info->mallocs; 141726fbe8dcSKarl Rupp 14189566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 141926fbe8dcSKarl Rupp 14209371c9d4SSatish Balay isend[0] += info->nz_used; 14219371c9d4SSatish Balay isend[1] += info->nz_allocated; 14229371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14239371c9d4SSatish Balay isend[3] += info->memory; 14249371c9d4SSatish Balay isend[4] += info->mallocs; 142526fbe8dcSKarl Rupp 14260ac07820SSatish Balay if (flag == MAT_LOCAL) { 14274e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14284e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14294e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14304e220ebcSLois Curfman McInnes info->memory = isend[3]; 14314e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14320ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14331c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 143426fbe8dcSKarl Rupp 14354e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14364e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14374e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14384e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14394e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14400ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144226fbe8dcSKarl Rupp 14434e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14444e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14454e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14464e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14474e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 144898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14494e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14504e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14514e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14530ac07820SSatish Balay } 14540ac07820SSatish Balay 145566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1456d71ae5a4SJacob Faibussowitsch { 145758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 145858667388SSatish Balay 1459d64ed03dSBarry Smith PetscFunctionBegin; 146012c028f9SKris Buschelman switch (op) { 1461512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1464a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 146512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 146643674050SBarry Smith MatCheckPreallocated(A, 1); 14679566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 146912c028f9SKris Buschelman break; 147012c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147143674050SBarry Smith MatCheckPreallocated(A, 1); 14724e0d8c25SBarry Smith a->roworiented = flg; 147326fbe8dcSKarl Rupp 14749566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14759566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147612c028f9SKris Buschelman break; 14778c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1478d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1479d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1480d71ae5a4SJacob Faibussowitsch break; 1481d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1482d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1483d71ae5a4SJacob Faibussowitsch break; 148412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14854e0d8c25SBarry Smith a->ht_flag = flg; 1486abf3b562SBarry Smith a->ht_fact = 1.39; 148712c028f9SKris Buschelman break; 148877e54ba9SKris Buschelman case MAT_SYMMETRIC: 148977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14902188ac68SBarry Smith case MAT_HERMITIAN: 1491c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14922188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1493b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1494b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1495b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 149677e54ba9SKris Buschelman break; 1497d71ae5a4SJacob Faibussowitsch default: 1498d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1499d64ed03dSBarry Smith } 15003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150158667388SSatish Balay } 150258667388SSatish Balay 150366976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1504d71ae5a4SJacob Faibussowitsch { 15050ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15060ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15070ac07820SSatish Balay Mat B; 1508d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1509d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15103eda8832SBarry Smith MatScalar *a; 15110ac07820SSatish Balay 1512d64ed03dSBarry Smith PetscFunctionBegin; 15137fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1514cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15159566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15179566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15182e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15199566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1520fc4dec0aSBarry Smith } else { 1521fc4dec0aSBarry Smith B = *matout; 1522fc4dec0aSBarry Smith } 15230ac07820SSatish Balay 15240ac07820SSatish Balay /* copy over the A part */ 15250ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15269371c9d4SSatish Balay ai = Aloc->i; 15279371c9d4SSatish Balay aj = Aloc->j; 15289371c9d4SSatish Balay a = Aloc->a; 15299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15300ac07820SSatish Balay 15310ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1532899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15340ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1535899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15360ac07820SSatish Balay for (k = 0; k < bs; k++) { 15379566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 153826fbe8dcSKarl Rupp 15399371c9d4SSatish Balay col++; 15409371c9d4SSatish Balay a += bs; 15410ac07820SSatish Balay } 15420ac07820SSatish Balay } 15430ac07820SSatish Balay } 15440ac07820SSatish Balay /* copy over the B part */ 15450ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15469371c9d4SSatish Balay ai = Aloc->i; 15479371c9d4SSatish Balay aj = Aloc->j; 15489371c9d4SSatish Balay a = Aloc->a; 15490ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1550899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15520ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15530ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15540ac07820SSatish Balay for (k = 0; k < bs; k++) { 15559566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155626fbe8dcSKarl Rupp col++; 155726fbe8dcSKarl Rupp a += bs; 15580ac07820SSatish Balay } 15590ac07820SSatish Balay } 15600ac07820SSatish Balay } 15619566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15640ac07820SSatish Balay 1565cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 156648a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15680ac07820SSatish Balay } 15690e95ebc0SSatish Balay 157066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1571d71ae5a4SJacob Faibussowitsch { 157236c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157336c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1574b24ad042SBarry Smith PetscInt s1, s2, s3; 15750e95ebc0SSatish Balay 1576d64ed03dSBarry Smith PetscFunctionBegin; 15779566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 157836c4a09eSSatish Balay if (rr) { 15799566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15805f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 158136c4a09eSSatish Balay /* Overlap communication with computation. */ 15829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158336c4a09eSSatish Balay } 15840e95ebc0SSatish Balay if (ll) { 15859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15865f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1587dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15880e95ebc0SSatish Balay } 158936c4a09eSSatish Balay /* scale the diagonal block */ 1590dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 159136c4a09eSSatish Balay 159236c4a09eSSatish Balay if (rr) { 159336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15949566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1595dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 159636c4a09eSSatish Balay } 15973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15980e95ebc0SSatish Balay } 15990e95ebc0SSatish Balay 160066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1601d71ae5a4SJacob Faibussowitsch { 16020ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160365a92638SMatthew G. Knepley PetscInt *lrows; 16046e520ac8SStefano Zampini PetscInt r, len; 160594342113SStefano Zampini PetscBool cong; 16060ac07820SSatish Balay 1607d64ed03dSBarry Smith PetscFunctionBegin; 16086e520ac8SStefano Zampini /* get locally owned rows */ 16099566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1610*dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 161197b48c8fSBarry Smith if (x && b) { 161265a92638SMatthew G. Knepley const PetscScalar *xx; 161365a92638SMatthew G. Knepley PetscScalar *bb; 161465a92638SMatthew G. Knepley 16159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16169566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 161765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162097b48c8fSBarry Smith } 162197b48c8fSBarry Smith 16220ac07820SSatish Balay /* actually zap the local rows */ 162372dacd9aSBarry Smith /* 162472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1625a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 162672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 162772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 162872dacd9aSBarry Smith 162972dacd9aSBarry Smith */ 16309c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16319566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16329566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163394342113SStefano Zampini if ((diag != 0.0) && cong) { 16349566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1635f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16369566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 163700045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 163865a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 163965a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16409566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1641a07cd24cSSatish Balay } 16429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16449c957beeSSatish Balay } else { 16459566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1646a07cd24cSSatish Balay } 16479566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16484f9cfa9eSBarry Smith 16494f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1650f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1651e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16521c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1653e56f5c9eSBarry Smith } 16543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16550ac07820SSatish Balay } 165672dacd9aSBarry Smith 165766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1658d71ae5a4SJacob Faibussowitsch { 16596f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1660131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1661131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16626f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16636f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16646f0a72daSMatthew G. Knepley PetscSF sf; 16656f0a72daSMatthew G. Knepley const PetscScalar *xx; 16666f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16676f0a72daSMatthew G. Knepley Vec xmask, lmask; 16686f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16696f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16706f0a72daSMatthew G. Knepley PetscScalar *aa; 16716f0a72daSMatthew G. Knepley 16726f0a72daSMatthew G. Knepley PetscFunctionBegin; 16736f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16756f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16776f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16786f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16795f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16805ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16819566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16825ba17502SJed Brown } 16836f0a72daSMatthew G. Knepley rrows[r].rank = p; 16846f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16856f0a72daSMatthew G. Knepley } 16869566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16886f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16899566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16909566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16919566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16926f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16939371c9d4SSatish Balay for (r = 0; r < n; ++r) 16949371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16956f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16969566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 16974cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 16989566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 16999566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17009566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17016f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17039566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17059566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17066f0a72daSMatthew G. Knepley if (x) { 17079566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17089566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17099566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17109566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17116f0a72daSMatthew G. Knepley } 17129566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17134cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17146f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17156f0a72daSMatthew G. Knepley row = lrows[i]; 17166f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1717f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs); 17186f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17196f0a72daSMatthew G. Knepley aa[0] = 0.0; 17206f0a72daSMatthew G. Knepley aa += bs; 17216f0a72daSMatthew G. Knepley } 17226f0a72daSMatthew G. Knepley } 17236f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17246f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17256f0a72daSMatthew G. Knepley row = i / bs; 17266f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17276f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17286f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17296f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1730f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k; 173189ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17326f0a72daSMatthew G. Knepley aa[0] = 0.0; 17336f0a72daSMatthew G. Knepley } 17346f0a72daSMatthew G. Knepley } 17356f0a72daSMatthew G. Knepley } 17366f0a72daSMatthew G. Knepley } 17376f0a72daSMatthew G. Knepley if (x) { 17389566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17406f0a72daSMatthew G. Knepley } 17419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17429566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17439566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17444f9cfa9eSBarry Smith 17454f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1746f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17474f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17494f9cfa9eSBarry Smith } 17503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17516f0a72daSMatthew G. Knepley } 17526f0a72daSMatthew G. Knepley 175366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1754d71ae5a4SJacob Faibussowitsch { 1755bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1756d64ed03dSBarry Smith 1757d64ed03dSBarry Smith PetscFunctionBegin; 17589566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1760bb5a7306SBarry Smith } 1761bb5a7306SBarry Smith 17626849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17630ac07820SSatish Balay 176466976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1765d71ae5a4SJacob Faibussowitsch { 17667fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17677fc3c18eSBarry Smith Mat a, b, c, d; 1768ace3abfcSBarry Smith PetscBool flg; 17697fc3c18eSBarry Smith 17707fc3c18eSBarry Smith PetscFunctionBegin; 17719371c9d4SSatish Balay a = matA->A; 17729371c9d4SSatish Balay b = matA->B; 17739371c9d4SSatish Balay c = matB->A; 17749371c9d4SSatish Balay d = matB->B; 17757fc3c18eSBarry Smith 17769566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 177748a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17807fc3c18eSBarry Smith } 17817fc3c18eSBarry Smith 178266976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1783d71ae5a4SJacob Faibussowitsch { 17843c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17853c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17863c896bc6SHong Zhang 17873c896bc6SHong Zhang PetscFunctionBegin; 17883c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17893c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17909566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17913c896bc6SHong Zhang } else { 17929566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17939566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17943c896bc6SHong Zhang } 17959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17973c896bc6SHong Zhang } 1798273d9f13SBarry Smith 1799d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1800d71ae5a4SJacob Faibussowitsch { 1801001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18024de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18034de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18044de5dceeSHong Zhang 18054de5dceeSHong Zhang PetscFunctionBegin; 18069566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18084de5dceeSHong Zhang } 18094de5dceeSHong Zhang 181066976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1811d71ae5a4SJacob Faibussowitsch { 18124fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18134fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18144fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1815b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18164fe895cdSHong Zhang 18174fe895cdSHong Zhang PetscFunctionBegin; 18184fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18194fe895cdSHong Zhang PetscScalar alpha = a; 18204fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18214fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18229566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1823792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18244fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18254fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1827792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18289566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1829ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18309566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18314fe895cdSHong Zhang } else { 18324de5dceeSHong Zhang Mat B; 18334de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18369566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18379566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18399566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18409566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18419566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18429566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18439566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18444de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18459566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18469566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18479566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18489566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18494fe895cdSHong Zhang } 18503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18514fe895cdSHong Zhang } 18524fe895cdSHong Zhang 185366976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1854d71ae5a4SJacob Faibussowitsch { 18555f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18565f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18572726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18582726fb6dSPierre Jolivet 18599566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18609566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18615f80ce2aSJacob Faibussowitsch } 18623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18632726fb6dSPierre Jolivet } 18642726fb6dSPierre Jolivet 186566976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1866d71ae5a4SJacob Faibussowitsch { 186799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 186899cafbc1SBarry Smith 186999cafbc1SBarry Smith PetscFunctionBegin; 18709566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18719566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187399cafbc1SBarry Smith } 187499cafbc1SBarry Smith 187566976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1876d71ae5a4SJacob Faibussowitsch { 187799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187899cafbc1SBarry Smith 187999cafbc1SBarry Smith PetscFunctionBegin; 18809566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18819566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188399cafbc1SBarry Smith } 188499cafbc1SBarry Smith 188566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1886d71ae5a4SJacob Faibussowitsch { 18874aa3045dSJed Brown IS iscol_local; 18884aa3045dSJed Brown PetscInt csize; 18894aa3045dSJed Brown 18904aa3045dSJed Brown PetscFunctionBegin; 18919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1892b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18939566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18945f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1895b79d0421SJed Brown } else { 18969566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1897b79d0421SJed Brown } 1898fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1899b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19009566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1902b79d0421SJed Brown } 19033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19044aa3045dSJed Brown } 190517df9f7cSHong Zhang 190682094794SBarry Smith /* 190782094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 190882094794SBarry Smith in local and then by concatenating the local matrices the end result. 19097dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19108f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 191182094794SBarry Smith */ 1912fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1913d71ae5a4SJacob Faibussowitsch { 191482094794SBarry Smith PetscMPIInt rank, size; 191582094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1916c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 191729dcf524SDmitry Karpeev Mat M, Mreuse; 191882094794SBarry Smith MatScalar *vwork, *aa; 1919ce94432eSBarry Smith MPI_Comm comm; 192029dcf524SDmitry Karpeev IS isrow_new, iscol_new; 192182094794SBarry Smith Mat_SeqBAIJ *aij; 192282094794SBarry Smith 192382094794SBarry Smith PetscFunctionBegin; 19249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 192729dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 192829dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19299566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1930864bd19bSPierre Jolivet if (isrow == iscol) { 1931864bd19bSPierre Jolivet iscol_new = isrow_new; 1932864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1933864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 193482094794SBarry Smith 193582094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19369566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19375f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1938fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 193982094794SBarry Smith } else { 1940fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 194182094794SBarry Smith } 19429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 194482094794SBarry Smith /* 194582094794SBarry Smith m - number of local rows 194682094794SBarry Smith n - number of columns (same on all processors) 194782094794SBarry Smith rstart - first row in new global matrix generated 194882094794SBarry Smith */ 19499566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19509566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195182094794SBarry Smith m = m / bs; 195282094794SBarry Smith n = n / bs; 195382094794SBarry Smith 195482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 195582094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 195682094794SBarry Smith ii = aij->i; 195782094794SBarry Smith jj = aij->j; 195882094794SBarry Smith 195982094794SBarry Smith /* 196082094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196182094794SBarry Smith portions of the matrix in order to do correct preallocation 196282094794SBarry Smith */ 196382094794SBarry Smith 196482094794SBarry Smith /* first get start and end of "diagonal" columns */ 196582094794SBarry Smith if (csize == PETSC_DECIDE) { 19669566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 196782094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 196882094794SBarry Smith nlocal = m; 196982094794SBarry Smith } else { 197082094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197182094794SBarry Smith } 197282094794SBarry Smith } else { 197382094794SBarry Smith nlocal = csize / bs; 197482094794SBarry Smith } 19759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 197682094794SBarry Smith rstart = rend - nlocal; 1977aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 197882094794SBarry Smith 197982094794SBarry Smith /* next, compute all the lengths */ 19809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198182094794SBarry Smith for (i = 0; i < m; i++) { 198282094794SBarry Smith jend = ii[i + 1] - ii[i]; 198382094794SBarry Smith olen = 0; 198482094794SBarry Smith dlen = 0; 198582094794SBarry Smith for (j = 0; j < jend; j++) { 198682094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 198782094794SBarry Smith else dlen++; 198882094794SBarry Smith jj++; 198982094794SBarry Smith } 199082094794SBarry Smith olens[i] = olen; 199182094794SBarry Smith dlens[i] = dlen; 199282094794SBarry Smith } 19939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 1995fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 19969566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19979566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19989566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 199982094794SBarry Smith } else { 200082094794SBarry Smith PetscInt ml, nl; 200182094794SBarry Smith 200282094794SBarry Smith M = *newmat; 20039566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20045f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20059566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 200682094794SBarry Smith /* 200782094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 200882094794SBarry Smith rather than the slower MatSetValues(). 200982094794SBarry Smith */ 201082094794SBarry Smith M->was_assembled = PETSC_TRUE; 201182094794SBarry Smith M->assembled = PETSC_FALSE; 201282094794SBarry Smith } 20139566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20149566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 201582094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 201682094794SBarry Smith ii = aij->i; 201782094794SBarry Smith jj = aij->j; 201882094794SBarry Smith aa = aij->a; 201982094794SBarry Smith for (i = 0; i < m; i++) { 202082094794SBarry Smith row = rstart / bs + i; 202182094794SBarry Smith nz = ii[i + 1] - ii[i]; 20229371c9d4SSatish Balay cwork = jj; 20238e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20249371c9d4SSatish Balay vwork = aa; 20258e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20269566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 202782094794SBarry Smith } 202882094794SBarry Smith 20299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203182094794SBarry Smith *newmat = M; 203282094794SBarry Smith 203382094794SBarry Smith /* save submatrix used in processor for next request */ 203482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20359566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20369566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 203782094794SBarry Smith } 20383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 203982094794SBarry Smith } 204082094794SBarry Smith 204166976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2042d71ae5a4SJacob Faibussowitsch { 204382094794SBarry Smith MPI_Comm comm, pcomm; 2044a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 204582094794SBarry Smith const PetscInt *rows; 2046dbf0e21dSBarry Smith PetscMPIInt size; 2047a0a83eb5SRémi Lacroix IS crowp, lcolp; 204882094794SBarry Smith 204982094794SBarry Smith PetscFunctionBegin; 20509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205182094794SBarry Smith /* make a collective version of 'rowp' */ 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 205382094794SBarry Smith if (pcomm == comm) { 205482094794SBarry Smith crowp = rowp; 205582094794SBarry Smith } else { 20569566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20579566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20589566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206082094794SBarry Smith } 20619566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2062a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2065dbf0e21dSBarry Smith if (size == 1) { 206682094794SBarry Smith lcolp = colp; 206782094794SBarry Smith } else { 20689566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 206982094794SBarry Smith } 20709566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207175f6568bSJed Brown /* now we just get the submatrix */ 20729566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2073fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2074a0a83eb5SRémi Lacroix /* clean up */ 207548a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 207648a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207882094794SBarry Smith } 207982094794SBarry Smith 208066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2081d71ae5a4SJacob Faibussowitsch { 20828c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20838c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20848c7482ecSBarry Smith 20858c7482ecSBarry Smith PetscFunctionBegin; 208626fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208726fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20898c7482ecSBarry Smith } 20908c7482ecSBarry Smith 209166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2092d71ae5a4SJacob Faibussowitsch { 2093f6d58c54SBarry Smith Mat B; 2094f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2095f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2096f6d58c54SBarry Smith Mat_SeqAIJ *b; 2097f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2098f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2099f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2100f6d58c54SBarry Smith 2101f6d58c54SBarry Smith PetscFunctionBegin; 21029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2104f6d58c54SBarry Smith 21052ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2107ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2109f6d58c54SBarry Smith displs = recvcounts + size; 2110f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2111f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2112f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2113f6d58c54SBarry Smith } 21149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21152ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21169566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21189566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2120f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2121f6d58c54SBarry Smith 21222ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2123f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2124f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2125f6d58c54SBarry Smith a_jsendbuf = ad->j; 2126f6d58c54SBarry Smith b_jsendbuf = bd->j; 2127f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2128f6d58c54SBarry Smith cnt = 0; 2129f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2130f6d58c54SBarry Smith /* put in lower diagonal portion */ 2131f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2132f6d58c54SBarry Smith while (m > 0) { 2133f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2134f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2135f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2136f6d58c54SBarry Smith m--; 2137f6d58c54SBarry Smith } 2138f6d58c54SBarry Smith 2139f6d58c54SBarry Smith /* put in diagonal portion */ 2140ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2141f6d58c54SBarry Smith 2142f6d58c54SBarry Smith /* put in upper diagonal portion */ 2143ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2144f6d58c54SBarry Smith } 21455f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2146f6d58c54SBarry Smith 21472ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2148f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2149f6d58c54SBarry Smith recvcounts[i] = 0; 2150ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2151f6d58c54SBarry Smith } 2152f6d58c54SBarry Smith displs[0] = 0; 2153ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21555804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2156f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21579566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2158f6d58c54SBarry Smith /* set the b->i indices */ 2159f6d58c54SBarry Smith b->i[0] = 0; 2160ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21619566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21649566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2165f6d58c54SBarry Smith 2166b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2167f6d58c54SBarry Smith *newmat = B; 21683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2169f6d58c54SBarry Smith } 2170f6d58c54SBarry Smith 217166976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2172d71ae5a4SJacob Faibussowitsch { 2173b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2174f4259b30SLisandro Dalcin Vec bb1 = NULL; 2175b1a666ecSBarry Smith 2176b1a666ecSBarry Smith PetscFunctionBegin; 2177b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21789566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2180b1a666ecSBarry Smith } 2181b1a666ecSBarry Smith 218248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21834e980039SJed Brown 2184b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2185b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2187b1a666ecSBarry Smith its--; 2188b1a666ecSBarry Smith } 2189b1a666ecSBarry Smith 2190b1a666ecSBarry Smith while (its--) { 21919566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21929566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2193b1a666ecSBarry Smith 2194b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21959566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21969566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2197b1a666ecSBarry Smith 2198b1a666ecSBarry Smith /* local sweep */ 21999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2200b1a666ecSBarry Smith } 2201b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2202b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22039566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2204b1a666ecSBarry Smith its--; 2205b1a666ecSBarry Smith } 2206b1a666ecSBarry Smith while (its--) { 22079566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22089566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2209b1a666ecSBarry Smith 2210b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22119566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22129566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2213b1a666ecSBarry Smith 2214b1a666ecSBarry Smith /* local sweep */ 22159566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2216b1a666ecSBarry Smith } 2217b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2218b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22199566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2220b1a666ecSBarry Smith its--; 2221b1a666ecSBarry Smith } 2222b1a666ecSBarry Smith while (its--) { 22239566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22249566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2225b1a666ecSBarry Smith 2226b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22279566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22289566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2229b1a666ecSBarry Smith 2230b1a666ecSBarry Smith /* local sweep */ 22319566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2232b1a666ecSBarry Smith } 2233ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2234b1a666ecSBarry Smith 22359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2237b1a666ecSBarry Smith } 2238b1a666ecSBarry Smith 223966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2240d71ae5a4SJacob Faibussowitsch { 224147f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2242a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 224347f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 224447f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 224547f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 224647f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 224747f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 224847f7623dSRémi Lacroix PetscReal *work; 224947f7623dSRémi Lacroix 225047f7623dSRémi Lacroix PetscFunctionBegin; 22519566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22529566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2253857cbf51SRichard Tran Mills if (type == NORM_2) { 225447f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 225547f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225647f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225747f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 225847f7623dSRémi Lacroix a_val++; 225947f7623dSRémi Lacroix } 226047f7623dSRémi Lacroix } 226147f7623dSRémi Lacroix } 226247f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226547f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 226647f7623dSRémi Lacroix b_val++; 226747f7623dSRémi Lacroix } 226847f7623dSRémi Lacroix } 226947f7623dSRémi Lacroix } 2270857cbf51SRichard Tran Mills } else if (type == NORM_1) { 227147f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227447f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 227547f7623dSRémi Lacroix a_val++; 227647f7623dSRémi Lacroix } 227747f7623dSRémi Lacroix } 227847f7623dSRémi Lacroix } 227947f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228247f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 228347f7623dSRémi Lacroix b_val++; 228447f7623dSRémi Lacroix } 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix } 2287857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 228847f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229147f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 229247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 229347f7623dSRémi Lacroix a_val++; 229447f7623dSRémi Lacroix } 229547f7623dSRémi Lacroix } 229647f7623dSRémi Lacroix } 229747f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230047f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 230147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 230247f7623dSRémi Lacroix b_val++; 230347f7623dSRémi Lacroix } 230447f7623dSRémi Lacroix } 230547f7623dSRémi Lacroix } 2306857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2307a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2308a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2309a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2310857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2311a873a8cdSSam Reynolds a_val++; 2312a873a8cdSSam Reynolds } 2313a873a8cdSSam Reynolds } 2314a873a8cdSSam Reynolds } 2315a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2316a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2317a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2318857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2319a873a8cdSSam Reynolds b_val++; 2320a873a8cdSSam Reynolds } 2321a873a8cdSSam Reynolds } 2322a873a8cdSSam Reynolds } 2323857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2324857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2325857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2326857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2327857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2328857cbf51SRichard Tran Mills a_val++; 2329857cbf51SRichard Tran Mills } 2330857cbf51SRichard Tran Mills } 2331857cbf51SRichard Tran Mills } 2332857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2333857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2334857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2335857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2336857cbf51SRichard Tran Mills b_val++; 2337857cbf51SRichard Tran Mills } 2338857cbf51SRichard Tran Mills } 2339857cbf51SRichard Tran Mills } 2340857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2341857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23421c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 234347f7623dSRémi Lacroix } else { 23441c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 234547f7623dSRémi Lacroix } 23469566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2347857cbf51SRichard Tran Mills if (type == NORM_2) { 2348a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2349857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2350a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 235147f7623dSRémi Lacroix } 23523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235347f7623dSRémi Lacroix } 235447f7623dSRémi Lacroix 235566976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2356d71ae5a4SJacob Faibussowitsch { 2357bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2358bbead8a2SBarry Smith 2359bbead8a2SBarry Smith PetscFunctionBegin; 23609566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23617b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23627b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23637b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2365bbead8a2SBarry Smith } 2366bbead8a2SBarry Smith 236766976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2368d71ae5a4SJacob Faibussowitsch { 23697d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23706f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23717d68702bSBarry Smith 23727d68702bSBarry Smith PetscFunctionBegin; 23736f33a894SBarry Smith if (!Y->preallocated) { 23749566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23756f33a894SBarry Smith } else if (!aij->nz) { 2376b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23779566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2378b83222d8SBarry Smith aij->nonew = nonew; 23797d68702bSBarry Smith } 23809566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23827d68702bSBarry Smith } 23838c7482ecSBarry Smith 238466976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2385d71ae5a4SJacob Faibussowitsch { 23863b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23873b49f96aSBarry Smith 23883b49f96aSBarry Smith PetscFunctionBegin; 23895f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23909566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23913b49f96aSBarry Smith if (d) { 23923b49f96aSBarry Smith PetscInt rstart; 23939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 23943b49f96aSBarry Smith *d += rstart / A->rmap->bs; 23953b49f96aSBarry Smith } 23963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23973b49f96aSBarry Smith } 23983b49f96aSBarry Smith 239966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2400d71ae5a4SJacob Faibussowitsch { 2401a5b7ff6bSBarry Smith PetscFunctionBegin; 2402a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2404a5b7ff6bSBarry Smith } 2405a5b7ff6bSBarry Smith 240617ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 240717ea310bSPierre Jolivet { 240817ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 240917ea310bSPierre Jolivet 241017ea310bSPierre Jolivet PetscFunctionBegin; 241117ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 241217ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 241317ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 241417ea310bSPierre Jolivet } 241517ea310bSPierre Jolivet 24163964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2417cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2418cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2419cc2dc46cSBarry Smith MatMult_MPIBAIJ, 242097304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24217c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24227c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2423f4259b30SLisandro Dalcin NULL, 2424f4259b30SLisandro Dalcin NULL, 2425f4259b30SLisandro Dalcin NULL, 2426f4259b30SLisandro Dalcin /*10*/ NULL, 2427f4259b30SLisandro Dalcin NULL, 2428f4259b30SLisandro Dalcin NULL, 2429b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2430cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 243197304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24327fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2433cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2434cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2435cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 243697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2437cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2438cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2439cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2440d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 2443f4259b30SLisandro Dalcin NULL, 2444f4259b30SLisandro Dalcin NULL, 244526cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2446f4259b30SLisandro Dalcin NULL, 2447f4259b30SLisandro Dalcin NULL, 2448a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2449f4259b30SLisandro Dalcin NULL, 2450d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2451f4259b30SLisandro Dalcin NULL, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 2454f4259b30SLisandro Dalcin NULL, 2455d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24567dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2457cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2458cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24593c896bc6SHong Zhang MatCopy_MPIBAIJ, 2460f4259b30SLisandro Dalcin /*44*/ NULL, 2461cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24627d68702bSBarry Smith MatShift_MPIBAIJ, 2463f4259b30SLisandro Dalcin NULL, 24646f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2465f4259b30SLisandro Dalcin /*49*/ NULL, 2466f4259b30SLisandro Dalcin NULL, 2467f4259b30SLisandro Dalcin NULL, 2468f4259b30SLisandro Dalcin NULL, 2469f4259b30SLisandro Dalcin NULL, 247093dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2471f4259b30SLisandro Dalcin NULL, 2472cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 247382094794SBarry Smith MatPermute_MPIBAIJ, 2474cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24757dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2476f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2477f14a1c24SBarry Smith MatView_MPIBAIJ, 2478f4259b30SLisandro Dalcin NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin /*64*/ NULL, 2481f4259b30SLisandro Dalcin NULL, 2482f4259b30SLisandro Dalcin NULL, 2483f4259b30SLisandro Dalcin NULL, 2484f4259b30SLisandro Dalcin NULL, 2485d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2486f4259b30SLisandro Dalcin NULL, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin NULL, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin /*74*/ NULL, 2491f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin /*79*/ NULL, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 24995bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2500f4259b30SLisandro Dalcin /*84*/ NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin /*89*/ NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin /*94*/ NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin /*99*/ NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin NULL, 25182726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin /*104*/ NULL, 252199cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25228c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin /*109*/ NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin NULL, 25293b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2530d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2531f4259b30SLisandro Dalcin NULL, 25324683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2533f4259b30SLisandro Dalcin NULL, 2534f4259b30SLisandro Dalcin NULL, 2535f4259b30SLisandro Dalcin /*119*/ NULL, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin NULL, 2539e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2540f4259b30SLisandro Dalcin /*124*/ NULL, 2541a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25423964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2543f4259b30SLisandro Dalcin NULL, 2544f4259b30SLisandro Dalcin NULL, 2545f4259b30SLisandro Dalcin /*129*/ NULL, 2546f4259b30SLisandro Dalcin NULL, 2547f4259b30SLisandro Dalcin NULL, 2548f4259b30SLisandro Dalcin NULL, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin /*134*/ NULL, 2551f4259b30SLisandro Dalcin NULL, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin NULL, 255546533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2556f4259b30SLisandro Dalcin NULL, 2557f4259b30SLisandro Dalcin NULL, 2558bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2559f4259b30SLisandro Dalcin NULL, 2560d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2561d70f29a3SPierre Jolivet NULL, 2562d70f29a3SPierre Jolivet NULL, 256399a7f59eSMark Adams NULL, 256499a7f59eSMark Adams NULL, 25657fb60732SBarry Smith NULL, 2566dec0b466SHong Zhang /*150*/ NULL, 2567eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 2568eede4a3fSMark Adams NULL}; 256979bdfe76SSatish Balay 2570cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2571c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2572d94109b8SHong Zhang 257366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2574d71ae5a4SJacob Faibussowitsch { 2575b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2576f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2577f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2578f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2579d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25803bd0feecSPierre Jolivet PetscBool nooffprocentries; 2581aac34f13SBarry Smith 2582aac34f13SBarry Smith PetscFunctionBegin; 25839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25879566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2588d0f46423SBarry Smith m = B->rmap->n / bs; 2589d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2590d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2591d0f46423SBarry Smith cend = B->cmap->rend / bs; 2592b8d659d7SLisandro Dalcin 25935f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2595aac34f13SBarry Smith for (i = 0; i < m; i++) { 2596cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25975f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2598b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 259937cd3c0dSBarry Smith dlen = 0; 260037cd3c0dSBarry Smith olen = 0; 2601cf12db73SBarry Smith JJ = jj + ii[i]; 2602b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 260337cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 260437cd3c0dSBarry Smith else dlen++; 2605aac34f13SBarry Smith JJ++; 2606aac34f13SBarry Smith } 260737cd3c0dSBarry Smith d_nnz[i] = dlen; 260837cd3c0dSBarry Smith o_nnz[i] = olen; 2609aac34f13SBarry Smith } 26109566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26119566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2612aac34f13SBarry Smith 2613b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 261448a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2615b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2616b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2617cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2618cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2619bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2620cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26219566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26223adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26233adadaf3SJed Brown PetscInt j; 26243adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26253adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26269566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26273adadaf3SJed Brown } 26283adadaf3SJed Brown } 2629aac34f13SBarry Smith } 2630aac34f13SBarry Smith 26319566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26323bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26333bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26363bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26373bd0feecSPierre Jolivet 26389566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2640aac34f13SBarry Smith } 2641aac34f13SBarry Smith 2642aac34f13SBarry Smith /*@C 264311a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2644aac34f13SBarry Smith 2645d083f849SBarry Smith Collective 2646aac34f13SBarry Smith 2647aac34f13SBarry Smith Input Parameters: 26481c4f3114SJed Brown + B - the matrix 2649dfb205c3SBarry Smith . bs - the block size 265020f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2651aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2652d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2653aac34f13SBarry Smith 2654664954b6SBarry Smith Level: advanced 2655aac34f13SBarry Smith 265695452b02SPatrick Sanan Notes: 2657d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2658d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2659d8a51d2aSBarry Smith called this routine. 2660d8a51d2aSBarry Smith 266111a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 266211a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26633adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 266411a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26653adadaf3SJed Brown block column and the second index is over columns within a block. 26663adadaf3SJed Brown 2667664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2668664954b6SBarry Smith 26697d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2670aac34f13SBarry Smith @*/ 2671d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2672d71ae5a4SJacob Faibussowitsch { 2673aac34f13SBarry Smith PetscFunctionBegin; 26746ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26756ba663aaSJed Brown PetscValidType(B, 1); 26766ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2677cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2679aac34f13SBarry Smith } 2680aac34f13SBarry Smith 2681d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2682d71ae5a4SJacob Faibussowitsch { 2683ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2684535b19f3SBarry Smith PetscInt i; 26855d2a9ed1SStefano Zampini PetscMPIInt size; 2686a23d5eceSKris Buschelman 2687a23d5eceSKris Buschelman PetscFunctionBegin; 2688ad79cf63SBarry Smith if (B->hash_active) { 2689aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2690ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2691ad79cf63SBarry Smith } 2692ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 26939566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 26949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26969566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2697899cda47SBarry Smith 2698a23d5eceSKris Buschelman if (d_nnz) { 2699ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2700a23d5eceSKris Buschelman } 2701a23d5eceSKris Buschelman if (o_nnz) { 2702ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2703a23d5eceSKris Buschelman } 2704a23d5eceSKris Buschelman 2705a23d5eceSKris Buschelman b->bs2 = bs * bs; 2706d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2707d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2708d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2709d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2710a23d5eceSKris Buschelman 2711ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2712d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2713d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2714d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2715d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2716a23d5eceSKris Buschelman 2717cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2718eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2719cb7b82ddSBarry Smith #else 27209566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2721cb7b82ddSBarry Smith #endif 27229566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27249566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2725cb7b82ddSBarry Smith 27269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2727c508b908SBarry Smith 2728c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27299566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27309566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27329566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2733c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2734cb7b82ddSBarry Smith 2735c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2736ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27379566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27399566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2740c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2741a23d5eceSKris Buschelman 27429566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27439566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2744526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2745cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2746cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2748a23d5eceSKris Buschelman } 2749a23d5eceSKris Buschelman 27507087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27517087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27525bf65638SKris Buschelman 2753d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2754d71ae5a4SJacob Faibussowitsch { 275582094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 275682094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 275782094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 275882094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 275982094794SBarry Smith 276082094794SBarry Smith PetscFunctionBegin; 27619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 276282094794SBarry Smith ii[0] = 0; 276382094794SBarry Smith for (i = 0; i < M; i++) { 276408401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 276508401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 276682094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27675ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27685ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27699371c9d4SSatish Balay if (jd[j] == i) { 27709371c9d4SSatish Balay ii[i + 1]--; 27719371c9d4SSatish Balay break; 27729371c9d4SSatish Balay } 27735ee9ba1cSJed Brown } 277482094794SBarry Smith } 27759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 277682094794SBarry Smith cnt = 0; 277782094794SBarry Smith for (i = 0; i < M; i++) { 277882094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 277982094794SBarry Smith if (garray[jo[j]] > rstart) break; 278082094794SBarry Smith jj[cnt++] = garray[jo[j]]; 278182094794SBarry Smith } 278282094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2783ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 278482094794SBarry Smith } 2785ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 278682094794SBarry Smith } 27879566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278982094794SBarry Smith } 279082094794SBarry Smith 2791c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 279262471d69SBarry Smith 2793cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2794b2573a8aSBarry Smith 2795d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2796d71ae5a4SJacob Faibussowitsch { 279762471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 279885a69837SSatish Balay Mat_MPIAIJ *b; 27995f80ce2aSJacob Faibussowitsch Mat B; 280062471d69SBarry Smith 280162471d69SBarry Smith PetscFunctionBegin; 28025f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 280362471d69SBarry Smith 28040f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28050f6d62edSLisandro Dalcin B = *newmat; 28060f6d62edSLisandro Dalcin } else { 28079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28089566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28109566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28130f6d62edSLisandro Dalcin } 281462471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 281562471d69SBarry Smith 28160f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28179566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28189566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28190f6d62edSLisandro Dalcin } else { 28207c612885SStefano Zampini PetscInt *garray = a->garray; 28217c612885SStefano Zampini Mat_SeqAIJ *bB; 28227c612885SStefano Zampini PetscInt bs, nnz; 28239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28257c612885SStefano Zampini /* just clear out the data structure */ 28267c612885SStefano Zampini PetscCall(MatDisAssemble_MPIAIJ(B)); 28279566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28289566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28297c612885SStefano Zampini 28307c612885SStefano Zampini /* Global numbering for b->B columns */ 28317c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28327c612885SStefano Zampini bs = A->rmap->bs; 28337c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28347c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28357c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28367c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28377c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28387c612885SStefano Zampini } 28390f6d62edSLisandro Dalcin } 28409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28420f6d62edSLisandro Dalcin 2843511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28449566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 284562471d69SBarry Smith } else { 284662471d69SBarry Smith *newmat = B; 284762471d69SBarry Smith } 28483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 284962471d69SBarry Smith } 285062471d69SBarry Smith 28510bad9183SKris Buschelman /*MC 2852fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28530bad9183SKris Buschelman 28540bad9183SKris Buschelman Options Database Keys: 285511a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28568c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28576679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 285867b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28590bad9183SKris Buschelman 28600bad9183SKris Buschelman Level: beginner 28610cd7f59aSBarry Smith 286211a5261eSBarry Smith Note: 28635e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 286411a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28650bad9183SKris Buschelman 28665e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28670bad9183SKris Buschelman M*/ 28680bad9183SKris Buschelman 2869cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2870c0cdd4a1SDahai Guo 2871d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2872d71ae5a4SJacob Faibussowitsch { 2873273d9f13SBarry Smith Mat_MPIBAIJ *b; 287494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2875273d9f13SBarry Smith 2876273d9f13SBarry Smith PetscFunctionBegin; 28774dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 287882502324SSatish Balay B->data = (void *)b; 2879aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2880273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2881273d9f13SBarry Smith 2882273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2885273d9f13SBarry Smith 2886273d9f13SBarry Smith /* build local table of row and column ownerships */ 28879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2888273d9f13SBarry Smith 2889273d9f13SBarry Smith /* build cache for off array entries formed */ 28909566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 289126fbe8dcSKarl Rupp 2892273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28930298fd71SBarry Smith b->colmap = NULL; 28940298fd71SBarry Smith b->garray = NULL; 2895273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2896273d9f13SBarry Smith 2897273d9f13SBarry Smith /* stuff used in block assembly */ 2898f4259b30SLisandro Dalcin b->barray = NULL; 2899273d9f13SBarry Smith 2900273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2901f4259b30SLisandro Dalcin b->lvec = NULL; 2902f4259b30SLisandro Dalcin b->Mvctx = NULL; 2903273d9f13SBarry Smith 2904273d9f13SBarry Smith /* stuff for MatGetRow() */ 2905f4259b30SLisandro Dalcin b->rowindices = NULL; 2906f4259b30SLisandro Dalcin b->rowvalues = NULL; 2907273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2908273d9f13SBarry Smith 2909273d9f13SBarry Smith /* hash table stuff */ 2910f4259b30SLisandro Dalcin b->ht = NULL; 2911f4259b30SLisandro Dalcin b->hd = NULL; 2912273d9f13SBarry Smith b->ht_size = 0; 2913273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2914273d9f13SBarry Smith b->ht_fact = 0; 2915273d9f13SBarry Smith b->ht_total_ct = 0; 2916273d9f13SBarry Smith b->ht_insert_ct = 0; 2917273d9f13SBarry Smith 29187dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29197a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29207a868f3eSHong Zhang 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29247ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29267ea3e4caSstefano_zampini #endif 29279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29349566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 293594ae4db5SBarry Smith 2936d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29379566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 293894ae4db5SBarry Smith if (flg) { 293994ae4db5SBarry Smith PetscReal fact = 1.39; 29409566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29419566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 294294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29439566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29449566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 294594ae4db5SBarry Smith } 2946d0609cedSBarry Smith PetscOptionsEnd(); 29473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2948273d9f13SBarry Smith } 2949273d9f13SBarry Smith 29502920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2951209238afSKris Buschelman /*MC 2952002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2953209238afSKris Buschelman 295411a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 295511a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2956209238afSKris Buschelman 2957209238afSKris Buschelman Options Database Keys: 295811a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2959209238afSKris Buschelman 2960209238afSKris Buschelman Level: beginner 2961209238afSKris Buschelman 296267be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2963209238afSKris Buschelman M*/ 2964209238afSKris Buschelman 2965273d9f13SBarry Smith /*@C 296611a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 296767be906fSBarry Smith (block compressed row). 2968273d9f13SBarry Smith 2969c3339decSBarry Smith Collective 2970273d9f13SBarry Smith 2971273d9f13SBarry Smith Input Parameters: 29721c4f3114SJed Brown + B - the matrix 297311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 297467be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2975273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2976273d9f13SBarry Smith submatrix (same for all local rows) 2977273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2978273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 297967be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 298095742e49SBarry Smith set it even if it is zero. 2981273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2982273d9f13SBarry Smith submatrix (same for all local rows). 2983273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2984273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 298567be906fSBarry Smith each block row) or `NULL`. 2986273d9f13SBarry Smith 298749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2988273d9f13SBarry Smith 2989273d9f13SBarry Smith Options Database Keys: 29908c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 299167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2992273d9f13SBarry Smith 299367be906fSBarry Smith Level: intermediate 299467be906fSBarry Smith 2995273d9f13SBarry Smith Notes: 299667be906fSBarry Smith For good matrix assembly performance 299767be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 299867be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 299967be906fSBarry Smith performance can be increased by more than a factor of 50. 300067be906fSBarry Smith 300111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3002273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3003273d9f13SBarry Smith 3004273d9f13SBarry Smith Storage Information: 3005273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3006273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3007273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3008273d9f13SBarry Smith local matrix (a rectangular submatrix). 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 301167be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 301267be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3013273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 301467be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3015273d9f13SBarry Smith 3016273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3017273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith .vb 3020273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3021a4b1a0f6SJed Brown -------------------------- 3022273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3023273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3024273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3025a4b1a0f6SJed Brown -------------------------- 3026273d9f13SBarry Smith .ve 3027273d9f13SBarry Smith 3028273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3029273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3030273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 303111a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3032273d9f13SBarry Smith 303367be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 303467be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3035273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 303620f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3037273d9f13SBarry Smith 303811a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3039aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 304067be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3041aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3042aa95bbe8SBarry Smith 304367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3044273d9f13SBarry Smith @*/ 3045d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3046d71ae5a4SJacob Faibussowitsch { 3047273d9f13SBarry Smith PetscFunctionBegin; 30486ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30496ba663aaSJed Brown PetscValidType(B, 1); 30506ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3051cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3053273d9f13SBarry Smith } 3054273d9f13SBarry Smith 30552920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 305679bdfe76SSatish Balay /*@C 305711a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 305867be906fSBarry Smith (block compressed row). 305979bdfe76SSatish Balay 3060d083f849SBarry Smith Collective 3061db81eaa0SLois Curfman McInnes 306279bdfe76SSatish Balay Input Parameters: 3063db81eaa0SLois Curfman McInnes + comm - MPI communicator 306411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 306511a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 306611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 306792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 306911a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 307092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 307211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 307311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 307447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 307579bdfe76SSatish Balay submatrix (same for all local rows) 307647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 307792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30780298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 307995742e49SBarry Smith and set it even if it is zero. 308047a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 308179bdfe76SSatish Balay submatrix (same for all local rows). 308247a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 308392e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30840298fd71SBarry Smith each block row) or NULL. 308579bdfe76SSatish Balay 308679bdfe76SSatish Balay Output Parameter: 308779bdfe76SSatish Balay . A - the matrix 308879bdfe76SSatish Balay 3089db81eaa0SLois Curfman McInnes Options Database Keys: 30908c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 309167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30923ffaccefSLois Curfman McInnes 309367be906fSBarry Smith Level: intermediate 309467be906fSBarry Smith 309567be906fSBarry Smith Notes: 309677433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 309777433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 309877433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 309977433607SBarry Smith 310067be906fSBarry Smith For good matrix assembly performance 310167be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 310267be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 310367be906fSBarry Smith performance can be increased by more than a factor of 50. 310467be906fSBarry Smith 310549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 310649a6f317SBarry Smith 310747a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 310847a75d0bSBarry Smith 310979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 311079bdfe76SSatish Balay (possibly both). 311179bdfe76SSatish Balay 311211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3113be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3114be79a94dSBarry Smith 311579bdfe76SSatish Balay Storage Information: 311679bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 311779bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311879bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311979bdfe76SSatish Balay local matrix (a rectangular submatrix). 312079bdfe76SSatish Balay 312179bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 312279bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 312367be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 312479bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 312567be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 312679bdfe76SSatish Balay 312779bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312879bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312979bdfe76SSatish Balay 3130db81eaa0SLois Curfman McInnes .vb 3131db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3132a4b1a0f6SJed Brown -------------------------- 3133db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3134db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3135db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3136a4b1a0f6SJed Brown -------------------------- 3137db81eaa0SLois Curfman McInnes .ve 313879bdfe76SSatish Balay 313979bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 314079bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 314179bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 314211a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 314379bdfe76SSatish Balay 314467be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 314567be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 314679bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 314720f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 314879bdfe76SSatish Balay 314942747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 315079bdfe76SSatish Balay @*/ 3151d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3152d71ae5a4SJacob Faibussowitsch { 3153b24ad042SBarry Smith PetscMPIInt size; 315479bdfe76SSatish Balay 3155d64ed03dSBarry Smith PetscFunctionBegin; 31569566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3159273d9f13SBarry Smith if (size > 1) { 31609566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31619566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3162273d9f13SBarry Smith } else { 31639566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31649566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31653914022bSBarry Smith } 31663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316779bdfe76SSatish Balay } 3168026e39d0SSatish Balay 3169d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3170d71ae5a4SJacob Faibussowitsch { 31710ac07820SSatish Balay Mat mat; 31720ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3173b24ad042SBarry Smith PetscInt len = 0; 31740ac07820SSatish Balay 3175d64ed03dSBarry Smith PetscFunctionBegin; 3176f4259b30SLisandro Dalcin *newmat = NULL; 31779566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31799566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31807fff6886SHong Zhang 3181420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3182420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3183420957c1SBarry Smith if (matin->hash_active) { 3184420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3185420957c1SBarry Smith } else { 3186d5f3da31SBarry Smith mat->factortype = matin->factortype; 3187273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31880ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31897fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31907fff6886SHong Zhang 3191273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3192d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31930ac07820SSatish Balay a->bs2 = oldmat->bs2; 31940ac07820SSatish Balay a->mbs = oldmat->mbs; 31950ac07820SSatish Balay a->nbs = oldmat->nbs; 31960ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31970ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31980ac07820SSatish Balay 31990ac07820SSatish Balay a->size = oldmat->size; 32000ac07820SSatish Balay a->rank = oldmat->rank; 3201aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3202aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3203f4259b30SLisandro Dalcin a->rowindices = NULL; 3204f4259b30SLisandro Dalcin a->rowvalues = NULL; 32050ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3206f4259b30SLisandro Dalcin a->barray = NULL; 3207899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3208899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3209899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3210899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32110ac07820SSatish Balay 3212133cdb44SSatish Balay /* hash table stuff */ 3213f4259b30SLisandro Dalcin a->ht = NULL; 3214f4259b30SLisandro Dalcin a->hd = NULL; 3215133cdb44SSatish Balay a->ht_size = 0; 3216133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3218133cdb44SSatish Balay a->ht_total_ct = 0; 3219133cdb44SSatish Balay a->ht_insert_ct = 0; 3220133cdb44SSatish Balay 32219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32220ac07820SSatish Balay if (oldmat->colmap) { 3223aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3224eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 322548e59246SSatish Balay #else 32269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32279566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 322848e59246SSatish Balay #endif 3229f4259b30SLisandro Dalcin } else a->colmap = NULL; 32304beb1cfeSHong Zhang 3231f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32339566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3234f4259b30SLisandro Dalcin } else a->garray = NULL; 32350ac07820SSatish Balay 32369566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32379566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32389566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32397fff6886SHong Zhang 32409566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32419566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3242420957c1SBarry Smith } 32439566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32440ac07820SSatish Balay *newmat = mat; 32453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32460ac07820SSatish Balay } 324757b952d6SSatish Balay 3248618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3250d71ae5a4SJacob Faibussowitsch { 3251b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3252b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3253b51a4376SLisandro Dalcin PetscScalar *matvals; 3254b51a4376SLisandro Dalcin 3255b51a4376SLisandro Dalcin PetscFunctionBegin; 32569566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3257b51a4376SLisandro Dalcin 3258b51a4376SLisandro Dalcin /* read in matrix header */ 32599566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32605f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32619371c9d4SSatish Balay M = header[1]; 32629371c9d4SSatish Balay N = header[2]; 32639371c9d4SSatish Balay nz = header[3]; 32645f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32655f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32665f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3267b51a4376SLisandro Dalcin 3268b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32699566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3270618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3271618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3272618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3273b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3274b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3275b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3278b51a4376SLisandro Dalcin 3279b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32809566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32815f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32829566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32849566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32859566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32869371c9d4SSatish Balay mbs = m / bs; 32879371c9d4SSatish Balay nbs = n / bs; 3288b51a4376SLisandro Dalcin 3289b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32919566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32929371c9d4SSatish Balay rowidxs[0] = 0; 32939371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32955f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3296b51a4376SLisandro Dalcin 3297b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32989566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 33009566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3301b51a4376SLisandro Dalcin 3302b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3303b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3304b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3305618cc2edSLisandro Dalcin PetscBool sbaij, done; 3306b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3307b51a4376SLisandro Dalcin 33089566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33099566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33109566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3312b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33139566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33149566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3315618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3316618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3317618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3318618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3319618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3320618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3321618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3322b51a4376SLisandro Dalcin } else { 33239566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3324b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3325b51a4376SLisandro Dalcin } 3326b51a4376SLisandro Dalcin } 3327618cc2edSLisandro Dalcin } 3328618cc2edSLisandro Dalcin } 3329618cc2edSLisandro Dalcin } 33309566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33319566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33329566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33339566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33349566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3335b51a4376SLisandro Dalcin } 3336b51a4376SLisandro Dalcin 3337b51a4376SLisandro Dalcin /* store matrix values */ 3338b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3339b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33409927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3341b51a4376SLisandro Dalcin } 3342b51a4376SLisandro Dalcin 33439566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33449566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3348b51a4376SLisandro Dalcin } 3349b51a4376SLisandro Dalcin 3350d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3351d71ae5a4SJacob Faibussowitsch { 33527f489da9SVaclav Hapla PetscBool isbinary; 33534683f7a4SShri Abhyankar 33544683f7a4SShri Abhyankar PetscFunctionBegin; 33559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33565f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33579566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33594683f7a4SShri Abhyankar } 33604683f7a4SShri Abhyankar 3361133cdb44SSatish Balay /*@ 336211a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3363133cdb44SSatish Balay 3364133cdb44SSatish Balay Input Parameters: 3365a2b725a8SWilliam Gropp + mat - the matrix 3366a2b725a8SWilliam Gropp - fact - factor 3367133cdb44SSatish Balay 336811a5261eSBarry Smith Options Database Key: 336911a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3370fee21e36SBarry Smith 33718c890885SBarry Smith Level: advanced 33728c890885SBarry Smith 337367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3374133cdb44SSatish Balay @*/ 3375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3376d71ae5a4SJacob Faibussowitsch { 33775bf65638SKris Buschelman PetscFunctionBegin; 3378cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33805bf65638SKris Buschelman } 33815bf65638SKris Buschelman 3382d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3383d71ae5a4SJacob Faibussowitsch { 338425fdafccSSatish Balay Mat_MPIBAIJ *baij; 3385133cdb44SSatish Balay 3386133cdb44SSatish Balay PetscFunctionBegin; 3387133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3388133cdb44SSatish Balay baij->ht_fact = fact; 33893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3390133cdb44SSatish Balay } 3391f2a5309cSSatish Balay 3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3393d71ae5a4SJacob Faibussowitsch { 3394f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3395ab4d48faSStefano Zampini PetscBool flg; 33965fd66863SKarl Rupp 3397f2a5309cSSatish Balay PetscFunctionBegin; 33989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33995f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 340021e72a00SBarry Smith if (Ad) *Ad = a->A; 340121e72a00SBarry Smith if (Ao) *Ao = a->B; 340221e72a00SBarry Smith if (colmap) *colmap = a->garray; 34033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3404f2a5309cSSatish Balay } 340585535b8eSBarry Smith 340685535b8eSBarry Smith /* 340785535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 340885535b8eSBarry Smith */ 340985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 341085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 341185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 341285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 341385535b8eSBarry Smith #endif 341485535b8eSBarry Smith 34152920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 341685535b8eSBarry Smith /*@C 341711a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 341885535b8eSBarry Smith 3419c3339decSBarry Smith Collective 342085535b8eSBarry Smith 342185535b8eSBarry Smith Input Parameters: 3422fe59aa6dSJacob Faibussowitsch + matin - the matrix 342385535b8eSBarry Smith . min - number of input rows 342485535b8eSBarry Smith . im - input rows 342585535b8eSBarry Smith . nin - number of input columns 342685535b8eSBarry Smith . in - input columns 342785535b8eSBarry Smith . v - numerical values input 342811a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 342985535b8eSBarry Smith 343020f4b53cSBarry Smith Level: advanced 343120f4b53cSBarry Smith 3432fe59aa6dSJacob Faibussowitsch Developer Notes: 343311a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 343485535b8eSBarry Smith 343567be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 343685535b8eSBarry Smith @*/ 343766976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3438d71ae5a4SJacob Faibussowitsch { 343985535b8eSBarry Smith /* convert input arguments to C version */ 344085535b8eSBarry Smith Mat mat = *matin; 344185535b8eSBarry Smith PetscInt m = *min, n = *nin; 344285535b8eSBarry Smith InsertMode addv = *addvin; 344385535b8eSBarry Smith 344485535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 344585535b8eSBarry Smith const MatScalar *value; 344685535b8eSBarry Smith MatScalar *barray = baij->barray; 3447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 344885535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 344985535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3450d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 345185535b8eSBarry Smith 345285535b8eSBarry Smith PetscFunctionBegin; 345385535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 345426fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34555f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34565f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 345785535b8eSBarry Smith if (mat->assembled) { 345885535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 345985535b8eSBarry Smith mat->assembled = PETSC_FALSE; 346085535b8eSBarry Smith } 34619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 346285535b8eSBarry Smith 346385535b8eSBarry Smith if (!barray) { 34649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 346585535b8eSBarry Smith baij->barray = barray; 346685535b8eSBarry Smith } 346785535b8eSBarry Smith 346826fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 346926fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 347026fbe8dcSKarl Rupp 347185535b8eSBarry Smith for (i = 0; i < m; i++) { 347285535b8eSBarry Smith if (im[i] < 0) continue; 34736bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 347485535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 347585535b8eSBarry Smith row = im[i] - rstart; 347685535b8eSBarry Smith for (j = 0; j < n; j++) { 347785535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 347885535b8eSBarry Smith if ((roworiented) && (n == 1)) { 347985535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 348085535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 348185535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 348285535b8eSBarry Smith } else { /* Here a copy is required */ 348385535b8eSBarry Smith if (roworiented) { 348485535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 348585535b8eSBarry Smith } else { 348685535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 348785535b8eSBarry Smith } 348885535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3489ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 349085535b8eSBarry Smith } 349185535b8eSBarry Smith barray -= bs2; 349285535b8eSBarry Smith } 349385535b8eSBarry Smith 349485535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 349585535b8eSBarry Smith col = in[j] - cstart; 34969566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3497f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3498f7d195e4SLawrence Mitchell continue; 3499f7d195e4SLawrence Mitchell } else { 3500f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 350185535b8eSBarry Smith if (mat->was_assembled) { 350248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 350385535b8eSBarry Smith 350485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 350585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35069371c9d4SSatish Balay { 35079371c9d4SSatish Balay PetscInt data; 3508eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 350908401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 351085535b8eSBarry Smith } 351185535b8eSBarry Smith #else 351208401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 351385535b8eSBarry Smith #endif 351485535b8eSBarry Smith #endif 351585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3516eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 351785535b8eSBarry Smith col = (col - 1) / bs; 351885535b8eSBarry Smith #else 351985535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 352085535b8eSBarry Smith #endif 3521f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35229566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 352385535b8eSBarry Smith col = in[j]; 352485535b8eSBarry Smith } 352526fbe8dcSKarl Rupp } else col = in[j]; 35269566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 352785535b8eSBarry Smith } 352885535b8eSBarry Smith } 352985535b8eSBarry Smith } else { 353085535b8eSBarry Smith if (!baij->donotstash) { 353185535b8eSBarry Smith if (roworiented) { 35329566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 353385535b8eSBarry Smith } else { 35349566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 353585535b8eSBarry Smith } 353685535b8eSBarry Smith } 353785535b8eSBarry Smith } 353885535b8eSBarry Smith } 353985535b8eSBarry Smith 354085535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354385535b8eSBarry Smith } 3544dfb205c3SBarry Smith 3545dfb205c3SBarry Smith /*@ 3546d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3547dfb205c3SBarry Smith 3548d083f849SBarry Smith Collective 3549dfb205c3SBarry Smith 3550dfb205c3SBarry Smith Input Parameters: 3551dfb205c3SBarry Smith + comm - MPI communicator 3552dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 355311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3554dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3555d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3556d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3557d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3558d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3559483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3560dfb205c3SBarry Smith . j - column indices 3561dfb205c3SBarry Smith - a - matrix values 3562dfb205c3SBarry Smith 3563dfb205c3SBarry Smith Output Parameter: 3564dfb205c3SBarry Smith . mat - the matrix 3565dfb205c3SBarry Smith 3566dfb205c3SBarry Smith Level: intermediate 3567dfb205c3SBarry Smith 3568dfb205c3SBarry Smith Notes: 356967be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3570dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 357111a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3572dfb205c3SBarry Smith 35733adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35743adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35753adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35763adadaf3SJed Brown with column-major ordering within blocks. 35773adadaf3SJed Brown 3578d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3579dfb205c3SBarry Smith 358067be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35817d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3582dfb205c3SBarry Smith @*/ 3583d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3584d71ae5a4SJacob Faibussowitsch { 3585dfb205c3SBarry Smith PetscFunctionBegin; 35865f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35875f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35889566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35909566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35919566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35929566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35939566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35949566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35959566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3597dfb205c3SBarry Smith } 3598e561ad89SHong Zhang 3599d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3600d71ae5a4SJacob Faibussowitsch { 3601bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3602bd153df0SHong Zhang PetscInt *indx; 3603bd153df0SHong Zhang PetscScalar *values; 3604e561ad89SHong Zhang 3605e561ad89SHong Zhang PetscFunctionBegin; 36069566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3607bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3608bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36092c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3610bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 361177f764caSHong Zhang PetscMPIInt rank, size; 3612e561ad89SHong Zhang 36139566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36149371c9d4SSatish Balay mbs = m / bs; 36159371c9d4SSatish Balay Nbs = N / cbs; 361648a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3617da91a574SPierre Jolivet nbs = n / cbs; 3618e561ad89SHong Zhang 36199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3620d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 362177f764caSHong Zhang 36229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 362477f764caSHong Zhang if (rank == size - 1) { 362577f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36265f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 362777f764caSHong Zhang } 362877f764caSHong Zhang 3629d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3630bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36319566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3632647a6520SHong Zhang nnz = nnz / bs; 3633647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36349566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36359566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3636e561ad89SHong Zhang } 36379566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3638e561ad89SHong Zhang 36399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36419566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36429566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36439566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36449566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3645d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36469566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3647e561ad89SHong Zhang } 3648e561ad89SHong Zhang 3649bd153df0SHong Zhang /* numeric phase */ 36509566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36519566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3652e561ad89SHong Zhang 3653e561ad89SHong Zhang for (i = 0; i < m; i++) { 36549566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3655e561ad89SHong Zhang Ii = i + rstart; 36569566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36579566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3658e561ad89SHong Zhang } 36599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3662e561ad89SHong Zhang } 3663