xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision dd8e379b23d2ef935d8131fb74f7eb73fef09263)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
614e879edeSHong Zhang   PetscScalar       *va, *vv;
624e879edeSHong Zhang   Vec                vB, vA;
634e879edeSHong Zhang   const PetscScalar *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
669566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
101d71ae5a4SJacob Faibussowitsch {
1027fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1037fc3c18eSBarry Smith 
1047fc3c18eSBarry Smith   PetscFunctionBegin;
1059566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1069566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087fc3c18eSBarry Smith }
1097fc3c18eSBarry Smith 
11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
111d71ae5a4SJacob Faibussowitsch {
1127fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1137fc3c18eSBarry Smith 
1147fc3c18eSBarry Smith   PetscFunctionBegin;
1159566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1169566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1187fc3c18eSBarry Smith }
1197fc3c18eSBarry Smith 
120537820f0SBarry Smith /*
121537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
12257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
123e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
12457b952d6SSatish Balay    length of colmap equals the global matrix length.
12557b952d6SSatish Balay */
126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
127d71ae5a4SJacob Faibussowitsch {
12857b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
12957b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
130d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
13157b952d6SSatish Balay 
132d64ed03dSBarry Smith   PetscFunctionBegin;
133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
134eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
135c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
13648e59246SSatish Balay #else
1379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
138928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
13948e59246SSatish Balay #endif
1403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14157b952d6SSatish Balay }
14257b952d6SSatish Balay 
143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
144a8f51744SPierre Jolivet   do { \
14580c1aa95SSatish Balay     brow = row / bs; \
1468e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1478e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1489371c9d4SSatish Balay     rmax = aimax[brow]; \
1499371c9d4SSatish Balay     nrow = ailen[brow]; \
15080c1aa95SSatish Balay     bcol = col / bs; \
1519371c9d4SSatish Balay     ridx = row % bs; \
1529371c9d4SSatish Balay     cidx = col % bs; \
1539371c9d4SSatish Balay     low  = 0; \
1549371c9d4SSatish Balay     high = nrow; \
155ab26458aSBarry Smith     while (high - low > 3) { \
156ab26458aSBarry Smith       t = (low + high) / 2; \
157ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
158ab26458aSBarry Smith       else low = t; \
159ab26458aSBarry Smith     } \
160ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
16180c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
16280c1aa95SSatish Balay       if (rp[_i] == bcol) { \
16380c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
164eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
165eada6651SSatish Balay         else *bap = value; \
166ac7a638eSSatish Balay         goto a_noinsert; \
16780c1aa95SSatish Balay       } \
16880c1aa95SSatish Balay     } \
16989280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1705f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
171fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
17280c1aa95SSatish Balay     N = nrow++ - 1; \
17380c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1759566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1769566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
17780c1aa95SSatish Balay     rp[_i]                          = bcol; \
17880c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
179ac7a638eSSatish Balay   a_noinsert:; \
18080c1aa95SSatish Balay     ailen[brow] = nrow; \
181a8f51744SPierre Jolivet   } while (0)
18257b952d6SSatish Balay 
183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
184a8f51744SPierre Jolivet   do { \
185ac7a638eSSatish Balay     brow = row / bs; \
1868e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
1878e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
1889371c9d4SSatish Balay     rmax = bimax[brow]; \
1899371c9d4SSatish Balay     nrow = bilen[brow]; \
190ac7a638eSSatish Balay     bcol = col / bs; \
1919371c9d4SSatish Balay     ridx = row % bs; \
1929371c9d4SSatish Balay     cidx = col % bs; \
1939371c9d4SSatish Balay     low  = 0; \
1949371c9d4SSatish Balay     high = nrow; \
195ac7a638eSSatish Balay     while (high - low > 3) { \
196ac7a638eSSatish Balay       t = (low + high) / 2; \
197ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
198ac7a638eSSatish Balay       else low = t; \
199ac7a638eSSatish Balay     } \
200ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
201ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
202ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
203ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
204ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
205ac7a638eSSatish Balay         else *bap = value; \
206ac7a638eSSatish Balay         goto b_noinsert; \
207ac7a638eSSatish Balay       } \
208ac7a638eSSatish Balay     } \
20989280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2105f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
211fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
212ac7a638eSSatish Balay     N = nrow++ - 1; \
213ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2149566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2159566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2169566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
217ac7a638eSSatish Balay     rp[_i]                          = bcol; \
218ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
219ac7a638eSSatish Balay   b_noinsert:; \
220ac7a638eSSatish Balay     bilen[brow] = nrow; \
221a8f51744SPierre Jolivet   } while (0)
222ac7a638eSSatish Balay 
223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
224d71ae5a4SJacob Faibussowitsch {
22557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
22693fea6afSBarry Smith   MatScalar    value;
227ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
228b24ad042SBarry Smith   PetscInt     i, j, row, col;
229d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
230d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
231d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
23257b952d6SSatish Balay 
233eada6651SSatish Balay   /* Some Variables required in the macro */
23480c1aa95SSatish Balay   Mat          A     = baij->A;
23580c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
236b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2373eda8832SBarry Smith   MatScalar   *aa = a->a;
238ac7a638eSSatish Balay 
239ac7a638eSSatish Balay   Mat          B     = baij->B;
240ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
241b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2423eda8832SBarry Smith   MatScalar   *ba = b->a;
243ac7a638eSSatish Balay 
244b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
245b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2463eda8832SBarry Smith   MatScalar *ap, *bap;
24780c1aa95SSatish Balay 
248d64ed03dSBarry Smith   PetscFunctionBegin;
24957b952d6SSatish Balay   for (i = 0; i < m; i++) {
2505ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2515f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
25257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
25357b952d6SSatish Balay       row = im[i] - rstart_orig;
25457b952d6SSatish Balay       for (j = 0; j < n; j++) {
25557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
25657b952d6SSatish Balay           col = in[j] - cstart_orig;
257db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
258db4deed7SKarl Rupp           else value = v[i + j * m];
259d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
260f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
261f7d195e4SLawrence Mitchell           continue;
262f7d195e4SLawrence Mitchell         } else {
263f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
26457b952d6SSatish Balay           if (mat->was_assembled) {
26548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
267eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
268bba1ac68SSatish Balay             col = col - 1;
26948e59246SSatish Balay #else
270bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
27148e59246SSatish Balay #endif
272f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2739566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2748295de27SSatish Balay               col = in[j];
2759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2769bf004c3SSatish Balay               B     = baij->B;
2779bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2789371c9d4SSatish Balay               bimax = b->imax;
2799371c9d4SSatish Balay               bi    = b->i;
2809371c9d4SSatish Balay               bilen = b->ilen;
2819371c9d4SSatish Balay               bj    = b->j;
2829bf004c3SSatish Balay               ba    = b->a;
283f7d195e4SLawrence Mitchell             } else {
284f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
285f7d195e4SLawrence Mitchell               col += in[j] % bs;
286f7d195e4SLawrence Mitchell             }
2878295de27SSatish Balay           } else col = in[j];
288db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
289db4deed7SKarl Rupp           else value = v[i + j * m];
290d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
2919566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
29257b952d6SSatish Balay         }
29357b952d6SSatish Balay       }
294d64ed03dSBarry Smith     } else {
2955f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
29690f02eecSBarry Smith       if (!baij->donotstash) {
2975080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
298ff2fd236SBarry Smith         if (roworiented) {
2999566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
300ff2fd236SBarry Smith         } else {
3019566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
30257b952d6SSatish Balay         }
30357b952d6SSatish Balay       }
30457b952d6SSatish Balay     }
30590f02eecSBarry Smith   }
3063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30757b952d6SSatish Balay }
30857b952d6SSatish Balay 
309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
310d71ae5a4SJacob Faibussowitsch {
311880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3128ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
313880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3148ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
315880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
316880c6e6aSBarry Smith   const PetscScalar *value       = v;
317880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
318880c6e6aSBarry Smith 
319880c6e6aSBarry Smith   PetscFunctionBegin;
320880c6e6aSBarry Smith   rp    = aj + ai[row];
321880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
322880c6e6aSBarry Smith   rmax  = imax[row];
323880c6e6aSBarry Smith   nrow  = ailen[row];
3248ab52850SBarry Smith   value = v;
3258ab52850SBarry Smith   low   = 0;
3268ab52850SBarry Smith   high  = nrow;
327880c6e6aSBarry Smith   while (high - low > 7) {
328880c6e6aSBarry Smith     t = (low + high) / 2;
329880c6e6aSBarry Smith     if (rp[t] > col) high = t;
330880c6e6aSBarry Smith     else low = t;
331880c6e6aSBarry Smith   }
332880c6e6aSBarry Smith   for (i = low; i < high; i++) {
333880c6e6aSBarry Smith     if (rp[i] > col) break;
334880c6e6aSBarry Smith     if (rp[i] == col) {
335880c6e6aSBarry Smith       bap = ap + bs2 * i;
336880c6e6aSBarry Smith       if (roworiented) {
337880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3388ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
339ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
340880c6e6aSBarry Smith           }
341880c6e6aSBarry Smith         } else {
3428ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
343ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
344880c6e6aSBarry Smith           }
345880c6e6aSBarry Smith         }
346880c6e6aSBarry Smith       } else {
347880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3488ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
349ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
350880c6e6aSBarry Smith             bap += bs;
351880c6e6aSBarry Smith           }
352880c6e6aSBarry Smith         } else {
3538ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
354ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
355880c6e6aSBarry Smith             bap += bs;
356880c6e6aSBarry Smith           }
357880c6e6aSBarry Smith         }
358880c6e6aSBarry Smith       }
359880c6e6aSBarry Smith       goto noinsert2;
360880c6e6aSBarry Smith     }
361880c6e6aSBarry Smith   }
362880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3635f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
364880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3659371c9d4SSatish Balay   N = nrow++ - 1;
3669371c9d4SSatish Balay   high++;
367880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3689566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3699566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
370880c6e6aSBarry Smith   rp[i] = col;
371880c6e6aSBarry Smith   bap   = ap + bs2 * i;
372880c6e6aSBarry Smith   if (roworiented) {
3738ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
374ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
375880c6e6aSBarry Smith     }
376880c6e6aSBarry Smith   } else {
3778ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
378ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
379880c6e6aSBarry Smith     }
380880c6e6aSBarry Smith   }
381880c6e6aSBarry Smith noinsert2:;
382880c6e6aSBarry Smith   ailen[row] = nrow;
3833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
384880c6e6aSBarry Smith }
385880c6e6aSBarry Smith 
3868ab52850SBarry Smith /*
3878ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3888ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3898ab52850SBarry Smith */
39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
391d71ae5a4SJacob Faibussowitsch {
392ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
393dd6ea824SBarry Smith   const PetscScalar *value;
394f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
395ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
396899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
397899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
398d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
399ab26458aSBarry Smith 
400b16ae2b1SBarry Smith   PetscFunctionBegin;
40130793edcSSatish Balay   if (!barray) {
4029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
40382502324SSatish Balay     baij->barray = barray;
40430793edcSSatish Balay   }
40530793edcSSatish Balay 
40626fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
40726fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
40826fbe8dcSKarl Rupp 
409ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4105ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4116bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
412ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
413ab26458aSBarry Smith       row = im[i] - rstart;
414ab26458aSBarry Smith       for (j = 0; j < n; j++) {
41515b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
41615b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
417f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
41815b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
419f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
42015b57d14SSatish Balay         } else { /* Here a copy is required */
421ab26458aSBarry Smith           if (roworiented) {
42253ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
423ab26458aSBarry Smith           } else {
42453ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
425abef11f7SSatish Balay           }
42653ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
42726fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
42853ef36baSBarry Smith             barray += bs;
42947513183SBarry Smith           }
43030793edcSSatish Balay           barray -= bs2;
43115b57d14SSatish Balay         }
432abef11f7SSatish Balay 
433abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
434abef11f7SSatish Balay           col = in[j] - cstart;
4359566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
436f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
437f7d195e4SLawrence Mitchell           continue;
438f7d195e4SLawrence Mitchell         } else {
439f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
440ab26458aSBarry Smith           if (mat->was_assembled) {
44148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
442a5eb4965SSatish Balay 
4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
444aa482453SBarry Smith   #if defined(PETSC_USE_CTABLE)
4459371c9d4SSatish Balay             {
4469371c9d4SSatish Balay               PetscInt data;
447eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
44808401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
449fa46199cSSatish Balay             }
45048e59246SSatish Balay   #else
45108401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
452a5eb4965SSatish Balay   #endif
45348e59246SSatish Balay #endif
454aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
455eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
456fa46199cSSatish Balay             col = (col - 1) / bs;
45748e59246SSatish Balay #else
458a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1) / bs;
45948e59246SSatish Balay #endif
460f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4619566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
462ab26458aSBarry Smith               col = in[j];
4635f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
464db4deed7SKarl Rupp           } else col = in[j];
4659566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
466ab26458aSBarry Smith         }
467ab26458aSBarry Smith       }
468d64ed03dSBarry Smith     } else {
4695f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
470ab26458aSBarry Smith       if (!baij->donotstash) {
471ff2fd236SBarry Smith         if (roworiented) {
4729566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
473ff2fd236SBarry Smith         } else {
4749566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
475ff2fd236SBarry Smith         }
476abef11f7SSatish Balay       }
477ab26458aSBarry Smith     }
478ab26458aSBarry Smith   }
4793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480ab26458aSBarry Smith }
4816fa18ffdSBarry Smith 
4820bdbc534SSatish Balay #define HASH_KEY             0.6180339887
483b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
484b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
485b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
48666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
487d71ae5a4SJacob Faibussowitsch {
4880bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
489ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
490b24ad042SBarry Smith   PetscInt     i, j, row, col;
491d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
492d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
493d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
494329f5518SBarry Smith   PetscReal    tmp;
4953eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
496b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
4970bdbc534SSatish Balay 
4980bdbc534SSatish Balay   PetscFunctionBegin;
4990bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50076bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5015f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5025f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50376bd3646SJed Brown     }
5040bdbc534SSatish Balay     row = im[i];
505c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5060bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5070bdbc534SSatish Balay         col = in[j];
508db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
509db4deed7SKarl Rupp         else value = v[i + j * m];
510b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
511c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
512c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5130bdbc534SSatish Balay 
514c2760754SSatish Balay         idx = h1;
51576bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
516187ce0cbSSatish Balay           insert_ct++;
517187ce0cbSSatish Balay           total_ct++;
518187ce0cbSSatish Balay           if (HT[idx] != key) {
519fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
520187ce0cbSSatish Balay             if (idx == size) {
521fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5225f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
523187ce0cbSSatish Balay             }
524187ce0cbSSatish Balay           }
52576bd3646SJed Brown         } else if (HT[idx] != key) {
526fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
527c2760754SSatish Balay           if (idx == size) {
528fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5295f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
530c2760754SSatish Balay           }
531c2760754SSatish Balay         }
532c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
533c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
534c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5350bdbc534SSatish Balay       }
53626fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
537ff2fd236SBarry Smith       if (roworiented) {
5389566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
539ff2fd236SBarry Smith       } else {
5409566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5410bdbc534SSatish Balay       }
5420bdbc534SSatish Balay     }
5430bdbc534SSatish Balay   }
54476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
545abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
546abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
54776bd3646SJed Brown   }
5483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5490bdbc534SSatish Balay }
5500bdbc534SSatish Balay 
55166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
552d71ae5a4SJacob Faibussowitsch {
5530bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
554ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
555b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
556899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
557d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
558b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
559329f5518SBarry Smith   PetscReal          tmp;
5603eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
561dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
562b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5630bdbc534SSatish Balay 
564d0a41580SSatish Balay   PetscFunctionBegin;
56526fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
56626fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
56726fbe8dcSKarl Rupp 
5680bdbc534SSatish Balay   for (i = 0; i < m; i++) {
56976bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5705f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5715f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57276bd3646SJed Brown     }
5730bdbc534SSatish Balay     row = im[i];
574ab715e2cSSatish Balay     v_t = v + i * nbs2;
575c2760754SSatish Balay     if (row >= rstart && row < rend) {
5760bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5770bdbc534SSatish Balay         col = in[j];
5780bdbc534SSatish Balay 
5790bdbc534SSatish Balay         /* Look up into the Hash Table */
580c2760754SSatish Balay         key = row * Nbs + col + 1;
581c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5820bdbc534SSatish Balay 
583c2760754SSatish Balay         idx = h1;
58476bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
585187ce0cbSSatish Balay           total_ct++;
586187ce0cbSSatish Balay           insert_ct++;
587187ce0cbSSatish Balay           if (HT[idx] != key) {
588fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
589187ce0cbSSatish Balay             if (idx == size) {
590fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5915f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
592187ce0cbSSatish Balay             }
593187ce0cbSSatish Balay           }
59476bd3646SJed Brown         } else if (HT[idx] != key) {
595fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
596c2760754SSatish Balay           if (idx == size) {
597fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5985f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
599c2760754SSatish Balay           }
600c2760754SSatish Balay         }
601c2760754SSatish Balay         baij_a = HD[idx];
6020bdbc534SSatish Balay         if (roworiented) {
603c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
604187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
605187ce0cbSSatish Balay           value = v_t;
606187ce0cbSSatish Balay           v_t += bs;
607fef45726SSatish Balay           if (addv == ADD_VALUES) {
608c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
609ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
610b4cc0f5aSSatish Balay             }
611fef45726SSatish Balay           } else {
612c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
613ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
614fef45726SSatish Balay             }
615fef45726SSatish Balay           }
6160bdbc534SSatish Balay         } else {
6170bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
618fef45726SSatish Balay           if (addv == ADD_VALUES) {
619b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
620ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
621fef45726SSatish Balay             }
622fef45726SSatish Balay           } else {
623fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
624ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
625b4cc0f5aSSatish Balay             }
6260bdbc534SSatish Balay           }
6270bdbc534SSatish Balay         }
6280bdbc534SSatish Balay       }
6290bdbc534SSatish Balay     } else {
6300bdbc534SSatish Balay       if (!baij->donotstash) {
6310bdbc534SSatish Balay         if (roworiented) {
6329566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6330bdbc534SSatish Balay         } else {
6349566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6350bdbc534SSatish Balay         }
6360bdbc534SSatish Balay       }
6370bdbc534SSatish Balay     }
6380bdbc534SSatish Balay   }
63976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
640abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
641abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
64276bd3646SJed Brown   }
6433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6440bdbc534SSatish Balay }
645133cdb44SSatish Balay 
64666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
647d71ae5a4SJacob Faibussowitsch {
648d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
649d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
650d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
651d6de1c52SSatish Balay 
652133cdb44SSatish Balay   PetscFunctionBegin;
653d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
65454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
65554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
656d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
657d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
658d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
65954c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66054c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
661d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
662d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6639566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
664d64ed03dSBarry Smith         } else {
66548a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
666aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
667eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
668fa46199cSSatish Balay           data--;
66948e59246SSatish Balay #else
67048e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
67148e59246SSatish Balay #endif
67248e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
673d9d09a02SSatish Balay           else {
67448e59246SSatish Balay             col = data + idxn[j] % bs;
6759566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
676d6de1c52SSatish Balay           }
677d6de1c52SSatish Balay         }
678d6de1c52SSatish Balay       }
679f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
680d6de1c52SSatish Balay   }
6813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
682d6de1c52SSatish Balay }
683d6de1c52SSatish Balay 
68466976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
685d71ae5a4SJacob Faibussowitsch {
686d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
687d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
688d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
689329f5518SBarry Smith   PetscReal    sum = 0.0;
6903eda8832SBarry Smith   MatScalar   *v;
691d6de1c52SSatish Balay 
692d64ed03dSBarry Smith   PetscFunctionBegin;
693d6de1c52SSatish Balay   if (baij->size == 1) {
6949566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
695d6de1c52SSatish Balay   } else {
696d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
697d6de1c52SSatish Balay       v  = amat->a;
6988a62d963SHong Zhang       nz = amat->nz * bs2;
6998a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7009371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7019371c9d4SSatish Balay         v++;
702d6de1c52SSatish Balay       }
703d6de1c52SSatish Balay       v  = bmat->a;
7048a62d963SHong Zhang       nz = bmat->nz * bs2;
7058a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7069371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7079371c9d4SSatish Balay         v++;
708d6de1c52SSatish Balay       }
7091c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7108f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7118a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7128a62d963SHong Zhang       PetscReal *tmp, *tmp2;
713899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7149566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7159566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7169371c9d4SSatish Balay       v  = amat->a;
7179371c9d4SSatish Balay       jj = amat->j;
7188a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7198a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7208a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7218a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7229371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7239371c9d4SSatish Balay             v++;
7248a62d963SHong Zhang           }
7258a62d963SHong Zhang         }
7268a62d963SHong Zhang         jj++;
7278a62d963SHong Zhang       }
7289371c9d4SSatish Balay       v  = bmat->a;
7299371c9d4SSatish Balay       jj = bmat->j;
7308a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7318a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7328a62d963SHong Zhang           col = bs * garray[*jj] + j;
7338a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7349371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7359371c9d4SSatish Balay             v++;
7368a62d963SHong Zhang           }
7378a62d963SHong Zhang         }
7388a62d963SHong Zhang         jj++;
7398a62d963SHong Zhang       }
7401c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7418a62d963SHong Zhang       *nrm = 0.0;
742d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7438a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7448a62d963SHong Zhang       }
7459566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7469566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7478a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
748577dd1f9SKris Buschelman       PetscReal *sums;
7499566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7508a62d963SHong Zhang       sum = 0.0;
7518a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7528a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7538a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7548a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7558a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7568a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7578a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7589371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7599371c9d4SSatish Balay               v++;
7608a62d963SHong Zhang             }
7618a62d963SHong Zhang           }
7628a62d963SHong Zhang         }
7638a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7648a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7658a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7668a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7678a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7689371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7699371c9d4SSatish Balay               v++;
7708a62d963SHong Zhang             }
7718a62d963SHong Zhang           }
7728a62d963SHong Zhang         }
7738a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7748a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7758a62d963SHong Zhang         }
7768a62d963SHong Zhang       }
7771c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7789566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
779ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
780d64ed03dSBarry Smith   }
7813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
782d6de1c52SSatish Balay }
78357b952d6SSatish Balay 
784fef45726SSatish Balay /*
785fef45726SSatish Balay   Creates the hash table, and sets the table
786fef45726SSatish Balay   This table is created only once.
787fef45726SSatish Balay   If new entried need to be added to the matrix
788fef45726SSatish Balay   then the hash table has to be destroyed and
789fef45726SSatish Balay   recreated.
790fef45726SSatish Balay */
79166976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
792d71ae5a4SJacob Faibussowitsch {
793596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
794596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
795596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
796b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
797fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
798899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
799b24ad042SBarry Smith   PetscInt    *HT, key;
8003eda8832SBarry Smith   MatScalar  **HD;
801329f5518SBarry Smith   PetscReal    tmp;
8026cf91177SBarry Smith #if defined(PETSC_USE_INFO)
803b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8044a15367fSSatish Balay #endif
805fef45726SSatish Balay 
806d64ed03dSBarry Smith   PetscFunctionBegin;
8073ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
808fef45726SSatish Balay 
809fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
810fca92195SBarry Smith   ht_size       = baij->ht_size;
8110bdbc534SSatish Balay 
812fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
814b9e4cc15SSatish Balay   HD = baij->hd;
815a07cd24cSSatish Balay   HT = baij->ht;
816b9e4cc15SSatish Balay 
817596b8d2eSBarry Smith   /* Loop Over A */
8180bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
819596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8200bdbc534SSatish Balay       row = i + rstart;
8210bdbc534SSatish Balay       col = aj[j] + cstart;
822596b8d2eSBarry Smith 
823187ce0cbSSatish Balay       key = row * Nbs + col + 1;
824fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
825fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
826fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
827fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
828fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
829596b8d2eSBarry Smith           break;
8306cf91177SBarry Smith #if defined(PETSC_USE_INFO)
831187ce0cbSSatish Balay         } else {
832187ce0cbSSatish Balay           ct++;
833187ce0cbSSatish Balay #endif
834596b8d2eSBarry Smith         }
835187ce0cbSSatish Balay       }
8366cf91177SBarry Smith #if defined(PETSC_USE_INFO)
837187ce0cbSSatish Balay       if (k > max) max = k;
838187ce0cbSSatish Balay #endif
839596b8d2eSBarry Smith     }
840596b8d2eSBarry Smith   }
841596b8d2eSBarry Smith   /* Loop Over B */
8420bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
843596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8440bdbc534SSatish Balay       row = i + rstart;
8450bdbc534SSatish Balay       col = garray[bj[j]];
846187ce0cbSSatish Balay       key = row * Nbs + col + 1;
847fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
848fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
849fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
850fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
851fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
852596b8d2eSBarry Smith           break;
8536cf91177SBarry Smith #if defined(PETSC_USE_INFO)
854187ce0cbSSatish Balay         } else {
855187ce0cbSSatish Balay           ct++;
856187ce0cbSSatish Balay #endif
857596b8d2eSBarry Smith         }
858187ce0cbSSatish Balay       }
8596cf91177SBarry Smith #if defined(PETSC_USE_INFO)
860187ce0cbSSatish Balay       if (k > max) max = k;
861187ce0cbSSatish Balay #endif
862596b8d2eSBarry Smith     }
863596b8d2eSBarry Smith   }
864596b8d2eSBarry Smith 
865596b8d2eSBarry Smith   /* Print Summary */
8666cf91177SBarry Smith #if defined(PETSC_USE_INFO)
867fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
86826fbe8dcSKarl Rupp     if (HT[i]) j++;
869c38d4ed2SBarry Smith   }
8709566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
871187ce0cbSSatish Balay #endif
8723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
873596b8d2eSBarry Smith }
87457b952d6SSatish Balay 
87566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
876d71ae5a4SJacob Faibussowitsch {
877bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
878b24ad042SBarry Smith   PetscInt     nstash, reallocs;
879bbb85fb3SSatish Balay 
880bbb85fb3SSatish Balay   PetscFunctionBegin;
8813ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
882bbb85fb3SSatish Balay 
8839566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8849566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8859566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8869566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8879566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8889566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
890bbb85fb3SSatish Balay }
891bbb85fb3SSatish Balay 
89266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
893d71ae5a4SJacob Faibussowitsch {
894bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
89591c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
896b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
897e44c0bd4SBarry Smith   PetscInt    *row, *col;
898ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
8993eda8832SBarry Smith   MatScalar   *val;
900b24ad042SBarry Smith   PetscMPIInt  n;
901bbb85fb3SSatish Balay 
902bbb85fb3SSatish Balay   PetscFunctionBegin;
9035fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9044cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
905a2d1c673SSatish Balay     while (1) {
9069566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
907a2d1c673SSatish Balay       if (!flg) break;
908a2d1c673SSatish Balay 
909bbb85fb3SSatish Balay       for (i = 0; i < n;) {
910bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
91126fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
91226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
91326fbe8dcSKarl Rupp         }
914bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
915bbb85fb3SSatish Balay         else ncols = n - i;
916bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9179566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
918bbb85fb3SSatish Balay         i = j;
919bbb85fb3SSatish Balay       }
920bbb85fb3SSatish Balay     }
9219566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
922a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9235e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
924a2d1c673SSatish Balay        restore the original flags */
925a2d1c673SSatish Balay     r1 = baij->roworiented;
926a2d1c673SSatish Balay     r2 = a->roworiented;
92791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
92826fbe8dcSKarl Rupp 
9297c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9307c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
931f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
932a2d1c673SSatish Balay     while (1) {
9339566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
934a2d1c673SSatish Balay       if (!flg) break;
935a2d1c673SSatish Balay 
936a2d1c673SSatish Balay       for (i = 0; i < n;) {
937a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
93826fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
93926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94026fbe8dcSKarl Rupp         }
941a2d1c673SSatish Balay         if (j < n) ncols = j - i;
942a2d1c673SSatish Balay         else ncols = n - i;
9439566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
944a2d1c673SSatish Balay         i = j;
945a2d1c673SSatish Balay       }
946a2d1c673SSatish Balay     }
9479566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
94826fbe8dcSKarl Rupp 
949a2d1c673SSatish Balay     baij->roworiented                           = r1;
950a2d1c673SSatish Balay     a->roworiented                              = r2;
9515e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
952bbb85fb3SSatish Balay   }
953bbb85fb3SSatish Balay 
9549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
956bbb85fb3SSatish Balay 
957bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9586aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
959bbb85fb3SSatish Balay   /*
960bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
961bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
962bbb85fb3SSatish Balay   */
963bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9645f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
96548a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
966bbb85fb3SSatish Balay   }
967bbb85fb3SSatish Balay 
96848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
971bbb85fb3SSatish Balay 
9726cf91177SBarry Smith #if defined(PETSC_USE_INFO)
973bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9749566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
97526fbe8dcSKarl Rupp 
976bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
977bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
978bbb85fb3SSatish Balay   }
979bbb85fb3SSatish Balay #endif
980bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9819566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
98226fbe8dcSKarl Rupp 
983bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
984bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
985bbb85fb3SSatish Balay   }
986bbb85fb3SSatish Balay 
9879566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
98826fbe8dcSKarl Rupp 
989f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9904f9cfa9eSBarry Smith 
9914f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
992f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
993e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
9941c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
995e56f5c9eSBarry Smith   }
9963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
997bbb85fb3SSatish Balay }
99857b952d6SSatish Balay 
9997da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10009804daf3SBarry Smith #include <petscdraw.h>
1001d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1002d71ae5a4SJacob Faibussowitsch {
100357b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10047da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1005d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1006ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1007b0a32e0cSBarry Smith   PetscViewer       sviewer;
1008f3ef73ceSBarry Smith   PetscViewerFormat format;
100957b952d6SSatish Balay 
1010d64ed03dSBarry Smith   PetscFunctionBegin;
10119566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10129566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
101332077d6dSBarry Smith   if (iascii) {
10149566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1015456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10164e220ebcSLois Curfman McInnes       MatInfo info;
10179566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10189566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10199566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10209371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10219371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10229566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10239566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10249566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10259566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10269566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10279566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10289566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10299566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10303ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1031fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10329566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10333ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
103404929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10353ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
103657b952d6SSatish Balay     }
103757b952d6SSatish Balay   }
103857b952d6SSatish Balay 
10390f5bd95cSBarry Smith   if (isdraw) {
1040b0a32e0cSBarry Smith     PetscDraw draw;
1041ace3abfcSBarry Smith     PetscBool isnull;
10429566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10439566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10443ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
104557b952d6SSatish Balay   }
104657b952d6SSatish Balay 
10477da1fb6eSBarry Smith   {
104857b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
104957b952d6SSatish Balay     Mat          A;
105057b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1051d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10523eda8832SBarry Smith     MatScalar   *a;
10533e219373SBarry Smith     const char  *matname;
105457b952d6SSatish Balay 
1055f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1056f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10579566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1058dd400576SPatrick Sanan     if (rank == 0) {
10599566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1060d64ed03dSBarry Smith     } else {
10619566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
106257b952d6SSatish Balay     }
10639566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10649566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10659566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
106657b952d6SSatish Balay 
106757b952d6SSatish Balay     /* copy over the A part */
106857b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10699371c9d4SSatish Balay     ai   = Aloc->i;
10709371c9d4SSatish Balay     aj   = Aloc->j;
10719371c9d4SSatish Balay     a    = Aloc->a;
10729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
107357b952d6SSatish Balay 
107457b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1075899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
107626fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
107757b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1078899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
107957b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10809566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10819371c9d4SSatish Balay           col++;
10829371c9d4SSatish Balay           a += bs;
108357b952d6SSatish Balay         }
108457b952d6SSatish Balay       }
108557b952d6SSatish Balay     }
108657b952d6SSatish Balay     /* copy over the B part */
108757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10889371c9d4SSatish Balay     ai   = Aloc->i;
10899371c9d4SSatish Balay     aj   = Aloc->j;
10909371c9d4SSatish Balay     a    = Aloc->a;
109157b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1092899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
109326fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
109457b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
109557b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
109657b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10979566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10989371c9d4SSatish Balay           col++;
10999371c9d4SSatish Balay           a += bs;
110057b952d6SSatish Balay         }
110157b952d6SSatish Balay       }
110257b952d6SSatish Balay     }
11039566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11049566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11059566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
110655843e3eSBarry Smith     /*
110755843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1108b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
110955843e3eSBarry Smith     */
11109566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
111123a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1112dd400576SPatrick Sanan     if (rank == 0) {
1113f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1114f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
111557b952d6SSatish Balay     }
11169566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11179566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
111857b952d6SSatish Balay   }
11193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112057b952d6SSatish Balay }
112157b952d6SSatish Balay 
1122618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1123d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1124d71ae5a4SJacob Faibussowitsch {
1125b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1126b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1127b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1128b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
112917a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
113017a3732bSBarry Smith   PetscInt64      nz, hnz;
1131b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1132b51a4376SLisandro Dalcin   PetscScalar    *matvals;
113317a3732bSBarry Smith   PetscMPIInt     rank;
1134660746e0SBarry Smith 
1135660746e0SBarry Smith   PetscFunctionBegin;
11369566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1137b51a4376SLisandro Dalcin 
1138b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1139b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1140b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1141b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1142b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1143b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1144b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1145b51a4376SLisandro Dalcin 
1146b51a4376SLisandro Dalcin   /* write matrix header */
1147660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11489371c9d4SSatish Balay   header[1] = M;
11499371c9d4SSatish Balay   header[2] = N;
115017a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
115117a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
115217a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11539566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1154660746e0SBarry Smith 
1155b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1157b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11589371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11599566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11609566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1161660746e0SBarry Smith 
1162b51a4376SLisandro Dalcin   /* fill in and store column indices */
11639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1164b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1165b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1166b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1167b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11689371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1169660746e0SBarry Smith       }
1170b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11719371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1172b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11739371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1174660746e0SBarry Smith     }
1175660746e0SBarry Smith   }
117617a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
11779566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11789566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1179660746e0SBarry Smith 
1180b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1182b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1183b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1184b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1185b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11869371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1187660746e0SBarry Smith       }
1188b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11899371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1190b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11919371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1192660746e0SBarry Smith     }
1193b51a4376SLisandro Dalcin   }
11949566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
11959566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1196660746e0SBarry Smith 
1197b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
11989566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
11993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1200660746e0SBarry Smith }
1201660746e0SBarry Smith 
1202d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1203d71ae5a4SJacob Faibussowitsch {
1204ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
120557b952d6SSatish Balay 
1206d64ed03dSBarry Smith   PetscFunctionBegin;
12079566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12109566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1211660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12129566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12131baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
121557b952d6SSatish Balay }
121657b952d6SSatish Balay 
121766976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1218d71ae5a4SJacob Faibussowitsch {
1219cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1220b24ad042SBarry Smith   PetscInt     nt;
1221cee3aa6bSSatish Balay 
1222d64ed03dSBarry Smith   PetscFunctionBegin;
12239566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12245f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12259566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1226da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12279566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12289566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12299566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12309566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1232cee3aa6bSSatish Balay }
1233cee3aa6bSSatish Balay 
123466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1235d71ae5a4SJacob Faibussowitsch {
1236cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1237d64ed03dSBarry Smith 
1238d64ed03dSBarry Smith   PetscFunctionBegin;
12399566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12409566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12419566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12429566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1244cee3aa6bSSatish Balay }
1245cee3aa6bSSatish Balay 
124666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1247d71ae5a4SJacob Faibussowitsch {
1248cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1249cee3aa6bSSatish Balay 
1250d64ed03dSBarry Smith   PetscFunctionBegin;
1251cee3aa6bSSatish Balay   /* do nondiagonal part */
12529566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1253cee3aa6bSSatish Balay   /* do local part */
12549566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1255e4a140f6SJunchao Zhang   /* add partial results together */
12569566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12579566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1259cee3aa6bSSatish Balay }
1260cee3aa6bSSatish Balay 
126166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1262d71ae5a4SJacob Faibussowitsch {
1263cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1264cee3aa6bSSatish Balay 
1265d64ed03dSBarry Smith   PetscFunctionBegin;
1266cee3aa6bSSatish Balay   /* do nondiagonal part */
12679566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1268cee3aa6bSSatish Balay   /* do local part */
12699566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1270e4a140f6SJunchao Zhang   /* add partial results together */
12719566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12729566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1274cee3aa6bSSatish Balay }
1275cee3aa6bSSatish Balay 
1276cee3aa6bSSatish Balay /*
1277cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1278cee3aa6bSSatish Balay    diagonal block
1279cee3aa6bSSatish Balay */
128066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1281d71ae5a4SJacob Faibussowitsch {
1282d64ed03dSBarry Smith   PetscFunctionBegin;
12835f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12849566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1286cee3aa6bSSatish Balay }
1287cee3aa6bSSatish Balay 
128866976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1289d71ae5a4SJacob Faibussowitsch {
1290cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1291d64ed03dSBarry Smith 
1292d64ed03dSBarry Smith   PetscFunctionBegin;
12939566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
12949566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
12953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1296cee3aa6bSSatish Balay }
1297026e39d0SSatish Balay 
1298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1299d71ae5a4SJacob Faibussowitsch {
1300acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
130187828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1302d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1303d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1304899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1305acdf5bf4SSatish Balay 
1306d64ed03dSBarry Smith   PetscFunctionBegin;
13075f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13085f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1309acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1310acdf5bf4SSatish Balay 
1311acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1312acdf5bf4SSatish Balay     /*
1313acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1314acdf5bf4SSatish Balay     */
1315acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1316b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1317bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1318acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
131926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1320acdf5bf4SSatish Balay     }
13219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1322acdf5bf4SSatish Balay   }
1323d9d09a02SSatish Balay   lrow = row - brstart;
1324acdf5bf4SSatish Balay 
13259371c9d4SSatish Balay   pvA = &vworkA;
13269371c9d4SSatish Balay   pcA = &cworkA;
13279371c9d4SSatish Balay   pvB = &vworkB;
13289371c9d4SSatish Balay   pcB = &cworkB;
13299371c9d4SSatish Balay   if (!v) {
13309371c9d4SSatish Balay     pvA = NULL;
13319371c9d4SSatish Balay     pvB = NULL;
13329371c9d4SSatish Balay   }
13339371c9d4SSatish Balay   if (!idx) {
13349371c9d4SSatish Balay     pcA = NULL;
13359371c9d4SSatish Balay     if (!v) pcB = NULL;
13369371c9d4SSatish Balay   }
13379566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13389566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1339acdf5bf4SSatish Balay   nztot = nzA + nzB;
1340acdf5bf4SSatish Balay 
1341acdf5bf4SSatish Balay   cmap = mat->garray;
1342acdf5bf4SSatish Balay   if (v || idx) {
1343acdf5bf4SSatish Balay     if (nztot) {
1344acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1345b24ad042SBarry Smith       PetscInt imark = -1;
1346acdf5bf4SSatish Balay       if (v) {
1347acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1348acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1349d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1350acdf5bf4SSatish Balay           else break;
1351acdf5bf4SSatish Balay         }
1352acdf5bf4SSatish Balay         imark = i;
1353acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1354acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1355acdf5bf4SSatish Balay       }
1356acdf5bf4SSatish Balay       if (idx) {
1357acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1358acdf5bf4SSatish Balay         if (imark > -1) {
1359ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1360acdf5bf4SSatish Balay         } else {
1361acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
136226fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1363acdf5bf4SSatish Balay             else break;
1364acdf5bf4SSatish Balay           }
1365acdf5bf4SSatish Balay           imark = i;
1366acdf5bf4SSatish Balay         }
1367d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1368d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1369acdf5bf4SSatish Balay       }
1370d64ed03dSBarry Smith     } else {
1371f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1372f4259b30SLisandro Dalcin       if (v) *v = NULL;
1373d212a18eSSatish Balay     }
1374acdf5bf4SSatish Balay   }
1375acdf5bf4SSatish Balay   *nz = nztot;
13769566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13779566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1379acdf5bf4SSatish Balay }
1380acdf5bf4SSatish Balay 
1381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1382d71ae5a4SJacob Faibussowitsch {
1383acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1384d64ed03dSBarry Smith 
1385d64ed03dSBarry Smith   PetscFunctionBegin;
13865f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1387acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1389acdf5bf4SSatish Balay }
1390acdf5bf4SSatish Balay 
139166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1392d71ae5a4SJacob Faibussowitsch {
139358667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1394d64ed03dSBarry Smith 
1395d64ed03dSBarry Smith   PetscFunctionBegin;
13969566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13979566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
13983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
139958667388SSatish Balay }
14000ac07820SSatish Balay 
140166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1402d71ae5a4SJacob Faibussowitsch {
14034e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14044e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14053966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14060ac07820SSatish Balay 
1407d64ed03dSBarry Smith   PetscFunctionBegin;
1408d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
140926fbe8dcSKarl Rupp 
14109566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
141126fbe8dcSKarl Rupp 
14129371c9d4SSatish Balay   isend[0] = info->nz_used;
14139371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14149371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14159371c9d4SSatish Balay   isend[3] = info->memory;
14169371c9d4SSatish Balay   isend[4] = info->mallocs;
141726fbe8dcSKarl Rupp 
14189566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
141926fbe8dcSKarl Rupp 
14209371c9d4SSatish Balay   isend[0] += info->nz_used;
14219371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14229371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14239371c9d4SSatish Balay   isend[3] += info->memory;
14249371c9d4SSatish Balay   isend[4] += info->mallocs;
142526fbe8dcSKarl Rupp 
14260ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14274e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14284e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14294e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14304e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14314e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14320ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14331c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
143426fbe8dcSKarl Rupp 
14354e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14364e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14374e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14384e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14394e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14400ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14411c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
144226fbe8dcSKarl Rupp 
14434e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14444e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14454e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14464e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14474e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
144898921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14494e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14504e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14514e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14530ac07820SSatish Balay }
14540ac07820SSatish Balay 
145566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1456d71ae5a4SJacob Faibussowitsch {
145758667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
145858667388SSatish Balay 
1459d64ed03dSBarry Smith   PetscFunctionBegin;
146012c028f9SKris Buschelman   switch (op) {
1461512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
146212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
146328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1464a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
146512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
146643674050SBarry Smith     MatCheckPreallocated(A, 1);
14679566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14689566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
146912c028f9SKris Buschelman     break;
147012c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
147143674050SBarry Smith     MatCheckPreallocated(A, 1);
14724e0d8c25SBarry Smith     a->roworiented = flg;
147326fbe8dcSKarl Rupp 
14749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147612c028f9SKris Buschelman     break;
14778c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1478d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1479d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1480d71ae5a4SJacob Faibussowitsch     break;
1481d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1482d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1483d71ae5a4SJacob Faibussowitsch     break;
148412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14854e0d8c25SBarry Smith     a->ht_flag = flg;
1486abf3b562SBarry Smith     a->ht_fact = 1.39;
148712c028f9SKris Buschelman     break;
148877e54ba9SKris Buschelman   case MAT_SYMMETRIC:
148977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14902188ac68SBarry Smith   case MAT_HERMITIAN:
1491c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
14922188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1493b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1494b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1495b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
149677e54ba9SKris Buschelman     break;
1497d71ae5a4SJacob Faibussowitsch   default:
1498d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1499d64ed03dSBarry Smith   }
15003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
150158667388SSatish Balay }
150258667388SSatish Balay 
150366976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1504d71ae5a4SJacob Faibussowitsch {
15050ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15060ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15070ac07820SSatish Balay   Mat          B;
1508d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1509d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15103eda8832SBarry Smith   MatScalar   *a;
15110ac07820SSatish Balay 
1512d64ed03dSBarry Smith   PetscFunctionBegin;
15137fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1514cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15159566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15169566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15179566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15182e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15199566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1520fc4dec0aSBarry Smith   } else {
1521fc4dec0aSBarry Smith     B = *matout;
1522fc4dec0aSBarry Smith   }
15230ac07820SSatish Balay 
15240ac07820SSatish Balay   /* copy over the A part */
15250ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15269371c9d4SSatish Balay   ai   = Aloc->i;
15279371c9d4SSatish Balay   aj   = Aloc->j;
15289371c9d4SSatish Balay   a    = Aloc->a;
15299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15300ac07820SSatish Balay 
15310ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1532899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
153326fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15340ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1535899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15360ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15379566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
153826fbe8dcSKarl Rupp 
15399371c9d4SSatish Balay         col++;
15409371c9d4SSatish Balay         a += bs;
15410ac07820SSatish Balay       }
15420ac07820SSatish Balay     }
15430ac07820SSatish Balay   }
15440ac07820SSatish Balay   /* copy over the B part */
15450ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15469371c9d4SSatish Balay   ai   = Aloc->i;
15479371c9d4SSatish Balay   aj   = Aloc->j;
15489371c9d4SSatish Balay   a    = Aloc->a;
15490ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1550899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
155126fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15520ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15530ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15540ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15559566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
155626fbe8dcSKarl Rupp         col++;
155726fbe8dcSKarl Rupp         a += bs;
15580ac07820SSatish Balay       }
15590ac07820SSatish Balay     }
15600ac07820SSatish Balay   }
15619566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15640ac07820SSatish Balay 
1565cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
156648a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15680ac07820SSatish Balay }
15690e95ebc0SSatish Balay 
157066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1571d71ae5a4SJacob Faibussowitsch {
157236c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
157336c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1574b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15750e95ebc0SSatish Balay 
1576d64ed03dSBarry Smith   PetscFunctionBegin;
15779566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
157836c4a09eSSatish Balay   if (rr) {
15799566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15805f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
158136c4a09eSSatish Balay     /* Overlap communication with computation. */
15829566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
158336c4a09eSSatish Balay   }
15840e95ebc0SSatish Balay   if (ll) {
15859566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15865f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1587dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15880e95ebc0SSatish Balay   }
158936c4a09eSSatish Balay   /* scale  the diagonal block */
1590dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
159136c4a09eSSatish Balay 
159236c4a09eSSatish Balay   if (rr) {
159336c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15949566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1595dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
159636c4a09eSSatish Balay   }
15973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15980e95ebc0SSatish Balay }
15990e95ebc0SSatish Balay 
160066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1601d71ae5a4SJacob Faibussowitsch {
16020ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
160365a92638SMatthew G. Knepley   PetscInt    *lrows;
16046e520ac8SStefano Zampini   PetscInt     r, len;
160594342113SStefano Zampini   PetscBool    cong;
16060ac07820SSatish Balay 
1607d64ed03dSBarry Smith   PetscFunctionBegin;
16086e520ac8SStefano Zampini   /* get locally owned rows */
16099566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1610*dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
161197b48c8fSBarry Smith   if (x && b) {
161265a92638SMatthew G. Knepley     const PetscScalar *xx;
161365a92638SMatthew G. Knepley     PetscScalar       *bb;
161465a92638SMatthew G. Knepley 
16159566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16169566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
161765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16189566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16199566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
162097b48c8fSBarry Smith   }
162197b48c8fSBarry Smith 
16220ac07820SSatish Balay   /* actually zap the local rows */
162372dacd9aSBarry Smith   /*
162472dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1625a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
162672dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
162772dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
162872dacd9aSBarry Smith 
162972dacd9aSBarry Smith   */
16309c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16319566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16329566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
163394342113SStefano Zampini   if ((diag != 0.0) && cong) {
16349566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1635f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16369566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
163700045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
163865a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
163965a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16409566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1641a07cd24cSSatish Balay     }
16429566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16439566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16449c957beeSSatish Balay   } else {
16459566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1646a07cd24cSSatish Balay   }
16479566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16484f9cfa9eSBarry Smith 
16494f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1650f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1651e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16521c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1653e56f5c9eSBarry Smith   }
16543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16550ac07820SSatish Balay }
165672dacd9aSBarry Smith 
165766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1658d71ae5a4SJacob Faibussowitsch {
16596f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1660131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1661131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16626f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16636f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16646f0a72daSMatthew G. Knepley   PetscSF            sf;
16656f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16666f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16676f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16686f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16696f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16706f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16716f0a72daSMatthew G. Knepley 
16726f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16736f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16756f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16776f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16786f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16795f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16805ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16819566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16825ba17502SJed Brown     }
16836f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16846f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16856f0a72daSMatthew G. Knepley   }
16869566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16879566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16886f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16899566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16909566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16919566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16926f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16939371c9d4SSatish Balay   for (r = 0; r < n; ++r)
16949371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
16956f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16969566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
16974cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
16989566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
16999566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17009566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17016f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17029566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17039566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17049566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17059566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17066f0a72daSMatthew G. Knepley   if (x) {
17079566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17089566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17099566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17109566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17116f0a72daSMatthew G. Knepley   }
17129566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17134cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17146f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17156f0a72daSMatthew G. Knepley     row   = lrows[i];
17166f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1717f4f49eeaSPierre Jolivet     aa    = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs);
17186f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17196f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17206f0a72daSMatthew G. Knepley       aa += bs;
17216f0a72daSMatthew G. Knepley     }
17226f0a72daSMatthew G. Knepley   }
17236f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17246f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17256f0a72daSMatthew G. Knepley     row = i / bs;
17266f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17276f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17286f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17296f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1730f4f49eeaSPierre Jolivet           aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k;
173189ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17326f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17336f0a72daSMatthew G. Knepley         }
17346f0a72daSMatthew G. Knepley       }
17356f0a72daSMatthew G. Knepley     }
17366f0a72daSMatthew G. Knepley   }
17376f0a72daSMatthew G. Knepley   if (x) {
17389566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17406f0a72daSMatthew G. Knepley   }
17419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17429566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17439566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17444f9cfa9eSBarry Smith 
17454f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1746f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17474f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17481c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17494f9cfa9eSBarry Smith   }
17503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17516f0a72daSMatthew G. Knepley }
17526f0a72daSMatthew G. Knepley 
175366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1754d71ae5a4SJacob Faibussowitsch {
1755bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1756d64ed03dSBarry Smith 
1757d64ed03dSBarry Smith   PetscFunctionBegin;
17589566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1760bb5a7306SBarry Smith }
1761bb5a7306SBarry Smith 
17626849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17630ac07820SSatish Balay 
176466976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1765d71ae5a4SJacob Faibussowitsch {
17667fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17677fc3c18eSBarry Smith   Mat          a, b, c, d;
1768ace3abfcSBarry Smith   PetscBool    flg;
17697fc3c18eSBarry Smith 
17707fc3c18eSBarry Smith   PetscFunctionBegin;
17719371c9d4SSatish Balay   a = matA->A;
17729371c9d4SSatish Balay   b = matA->B;
17739371c9d4SSatish Balay   c = matB->A;
17749371c9d4SSatish Balay   d = matB->B;
17757fc3c18eSBarry Smith 
17769566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
177748a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17781c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17807fc3c18eSBarry Smith }
17817fc3c18eSBarry Smith 
178266976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1783d71ae5a4SJacob Faibussowitsch {
17843c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17853c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17863c896bc6SHong Zhang 
17873c896bc6SHong Zhang   PetscFunctionBegin;
17883c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17893c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17909566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
17913c896bc6SHong Zhang   } else {
17929566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
17939566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
17943c896bc6SHong Zhang   }
17959566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17973c896bc6SHong Zhang }
1798273d9f13SBarry Smith 
1799d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1800d71ae5a4SJacob Faibussowitsch {
1801001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18024de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18034de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18044de5dceeSHong Zhang 
18054de5dceeSHong Zhang   PetscFunctionBegin;
18069566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18084de5dceeSHong Zhang }
18094de5dceeSHong Zhang 
181066976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1811d71ae5a4SJacob Faibussowitsch {
18124fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18134fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18144fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1815b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18164fe895cdSHong Zhang 
18174fe895cdSHong Zhang   PetscFunctionBegin;
18184fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18194fe895cdSHong Zhang     PetscScalar alpha = a;
18204fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18214fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18229566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1823792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18244fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18254fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18269566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1827792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18289566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1829ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18309566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18314fe895cdSHong Zhang   } else {
18324de5dceeSHong Zhang     Mat       B;
18334de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18369566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18379566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18389566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18399566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18409566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18419566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18429566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18439566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18444de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18459566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18469566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18479566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18489566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18494fe895cdSHong Zhang   }
18503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18514fe895cdSHong Zhang }
18524fe895cdSHong Zhang 
185366976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1854d71ae5a4SJacob Faibussowitsch {
18555f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18565f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18572726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18582726fb6dSPierre Jolivet 
18599566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18609566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18615f80ce2aSJacob Faibussowitsch   }
18623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18632726fb6dSPierre Jolivet }
18642726fb6dSPierre Jolivet 
186566976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1866d71ae5a4SJacob Faibussowitsch {
186799cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
186899cafbc1SBarry Smith 
186999cafbc1SBarry Smith   PetscFunctionBegin;
18709566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18719566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
187399cafbc1SBarry Smith }
187499cafbc1SBarry Smith 
187566976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1876d71ae5a4SJacob Faibussowitsch {
187799cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187899cafbc1SBarry Smith 
187999cafbc1SBarry Smith   PetscFunctionBegin;
18809566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18819566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188399cafbc1SBarry Smith }
188499cafbc1SBarry Smith 
188566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1886d71ae5a4SJacob Faibussowitsch {
18874aa3045dSJed Brown   IS       iscol_local;
18884aa3045dSJed Brown   PetscInt csize;
18894aa3045dSJed Brown 
18904aa3045dSJed Brown   PetscFunctionBegin;
18919566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1892b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18939566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
18945f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1895b79d0421SJed Brown   } else {
18969566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1897b79d0421SJed Brown   }
1898fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1899b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19009566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19019566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1902b79d0421SJed Brown   }
19033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19044aa3045dSJed Brown }
190517df9f7cSHong Zhang 
190682094794SBarry Smith /*
190782094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
190882094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19097dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19108f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
191182094794SBarry Smith */
1912fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1913d71ae5a4SJacob Faibussowitsch {
191482094794SBarry Smith   PetscMPIInt  rank, size;
191582094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1916c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
191729dcf524SDmitry Karpeev   Mat          M, Mreuse;
191882094794SBarry Smith   MatScalar   *vwork, *aa;
1919ce94432eSBarry Smith   MPI_Comm     comm;
192029dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
192182094794SBarry Smith   Mat_SeqBAIJ *aij;
192282094794SBarry Smith 
192382094794SBarry Smith   PetscFunctionBegin;
19249566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
192729dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
192829dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19299566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1930864bd19bSPierre Jolivet   if (isrow == iscol) {
1931864bd19bSPierre Jolivet     iscol_new = isrow_new;
1932864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1933864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
193482094794SBarry Smith 
193582094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19369566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19375f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1938fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
193982094794SBarry Smith   } else {
1940fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
194182094794SBarry Smith   }
19429566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19439566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
194482094794SBarry Smith   /*
194582094794SBarry Smith       m - number of local rows
194682094794SBarry Smith       n - number of columns (same on all processors)
194782094794SBarry Smith       rstart - first row in new global matrix generated
194882094794SBarry Smith   */
19499566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19509566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
195182094794SBarry Smith   m = m / bs;
195282094794SBarry Smith   n = n / bs;
195382094794SBarry Smith 
195482094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
195582094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
195682094794SBarry Smith     ii  = aij->i;
195782094794SBarry Smith     jj  = aij->j;
195882094794SBarry Smith 
195982094794SBarry Smith     /*
196082094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
196182094794SBarry Smith         portions of the matrix in order to do correct preallocation
196282094794SBarry Smith     */
196382094794SBarry Smith 
196482094794SBarry Smith     /* first get start and end of "diagonal" columns */
196582094794SBarry Smith     if (csize == PETSC_DECIDE) {
19669566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
196782094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
196882094794SBarry Smith         nlocal = m;
196982094794SBarry Smith       } else {
197082094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
197182094794SBarry Smith       }
197282094794SBarry Smith     } else {
197382094794SBarry Smith       nlocal = csize / bs;
197482094794SBarry Smith     }
19759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
197682094794SBarry Smith     rstart = rend - nlocal;
1977aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
197882094794SBarry Smith 
197982094794SBarry Smith     /* next, compute all the lengths */
19809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
198182094794SBarry Smith     for (i = 0; i < m; i++) {
198282094794SBarry Smith       jend = ii[i + 1] - ii[i];
198382094794SBarry Smith       olen = 0;
198482094794SBarry Smith       dlen = 0;
198582094794SBarry Smith       for (j = 0; j < jend; j++) {
198682094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
198782094794SBarry Smith         else dlen++;
198882094794SBarry Smith         jj++;
198982094794SBarry Smith       }
199082094794SBarry Smith       olens[i] = olen;
199182094794SBarry Smith       dlens[i] = dlen;
199282094794SBarry Smith     }
19939566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
19949566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
1995fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
19969566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19979566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19989566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
199982094794SBarry Smith   } else {
200082094794SBarry Smith     PetscInt ml, nl;
200182094794SBarry Smith 
200282094794SBarry Smith     M = *newmat;
20039566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20045f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20059566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
200682094794SBarry Smith     /*
200782094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
200882094794SBarry Smith        rather than the slower MatSetValues().
200982094794SBarry Smith     */
201082094794SBarry Smith     M->was_assembled = PETSC_TRUE;
201182094794SBarry Smith     M->assembled     = PETSC_FALSE;
201282094794SBarry Smith   }
20139566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20149566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
201582094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
201682094794SBarry Smith   ii  = aij->i;
201782094794SBarry Smith   jj  = aij->j;
201882094794SBarry Smith   aa  = aij->a;
201982094794SBarry Smith   for (i = 0; i < m; i++) {
202082094794SBarry Smith     row   = rstart / bs + i;
202182094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20229371c9d4SSatish Balay     cwork = jj;
20238e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20249371c9d4SSatish Balay     vwork = aa;
20258e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20269566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
202782094794SBarry Smith   }
202882094794SBarry Smith 
20299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
203182094794SBarry Smith   *newmat = M;
203282094794SBarry Smith 
203382094794SBarry Smith   /* save submatrix used in processor for next request */
203482094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20359566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20369566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
203782094794SBarry Smith   }
20383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
203982094794SBarry Smith }
204082094794SBarry Smith 
204166976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2042d71ae5a4SJacob Faibussowitsch {
204382094794SBarry Smith   MPI_Comm        comm, pcomm;
2044a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
204582094794SBarry Smith   const PetscInt *rows;
2046dbf0e21dSBarry Smith   PetscMPIInt     size;
2047a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
204882094794SBarry Smith 
204982094794SBarry Smith   PetscFunctionBegin;
20509566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
205182094794SBarry Smith   /* make a collective version of 'rowp' */
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
205382094794SBarry Smith   if (pcomm == comm) {
205482094794SBarry Smith     crowp = rowp;
205582094794SBarry Smith   } else {
20569566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20579566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20589566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20599566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
206082094794SBarry Smith   }
20619566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2062a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2065dbf0e21dSBarry Smith   if (size == 1) {
206682094794SBarry Smith     lcolp = colp;
206782094794SBarry Smith   } else {
20689566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
206982094794SBarry Smith   }
20709566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
207175f6568bSJed Brown   /* now we just get the submatrix */
20729566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2073fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2074a0a83eb5SRémi Lacroix   /* clean up */
207548a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
207648a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207882094794SBarry Smith }
207982094794SBarry Smith 
208066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2081d71ae5a4SJacob Faibussowitsch {
20828c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20838c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20848c7482ecSBarry Smith 
20858c7482ecSBarry Smith   PetscFunctionBegin;
208626fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
208726fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20898c7482ecSBarry Smith }
20908c7482ecSBarry Smith 
209166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2092d71ae5a4SJacob Faibussowitsch {
2093f6d58c54SBarry Smith   Mat          B;
2094f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2095f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2096f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2097f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2098f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2099f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2100f6d58c54SBarry Smith 
2101f6d58c54SBarry Smith   PetscFunctionBegin;
21029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2104f6d58c54SBarry Smith 
21052ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2107ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2109f6d58c54SBarry Smith   displs = recvcounts + size;
2110f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2111f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2112f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2113f6d58c54SBarry Smith   }
21149566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21152ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21169566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21179566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21189566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2120f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2121f6d58c54SBarry Smith 
21222ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2123f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2124f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2125f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2126f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2127f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2128f6d58c54SBarry Smith   cnt        = 0;
2129f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2130f6d58c54SBarry Smith     /* put in lower diagonal portion */
2131f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2132f6d58c54SBarry Smith     while (m > 0) {
2133f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2134f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2135f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2136f6d58c54SBarry Smith       m--;
2137f6d58c54SBarry Smith     }
2138f6d58c54SBarry Smith 
2139f6d58c54SBarry Smith     /* put in diagonal portion */
2140ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2141f6d58c54SBarry Smith 
2142f6d58c54SBarry Smith     /* put in upper diagonal portion */
2143ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2144f6d58c54SBarry Smith   }
21455f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2146f6d58c54SBarry Smith 
21472ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2148f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2149f6d58c54SBarry Smith     recvcounts[i] = 0;
2150ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2151f6d58c54SBarry Smith   }
2152f6d58c54SBarry Smith   displs[0] = 0;
2153ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21555804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2156f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21579566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2158f6d58c54SBarry Smith   /* set the b->i indices */
2159f6d58c54SBarry Smith   b->i[0] = 0;
2160ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21619566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21649566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2165f6d58c54SBarry Smith 
2166b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2167f6d58c54SBarry Smith   *newmat = B;
21683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2169f6d58c54SBarry Smith }
2170f6d58c54SBarry Smith 
217166976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2172d71ae5a4SJacob Faibussowitsch {
2173b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2174f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2175b1a666ecSBarry Smith 
2176b1a666ecSBarry Smith   PetscFunctionBegin;
2177b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21789566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21793ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2180b1a666ecSBarry Smith   }
2181b1a666ecSBarry Smith 
218248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21834e980039SJed Brown 
2184b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2185b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21869566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2187b1a666ecSBarry Smith       its--;
2188b1a666ecSBarry Smith     }
2189b1a666ecSBarry Smith 
2190b1a666ecSBarry Smith     while (its--) {
21919566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21929566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2193b1a666ecSBarry Smith 
2194b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21959566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21969566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2197b1a666ecSBarry Smith 
2198b1a666ecSBarry Smith       /* local sweep */
21999566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2200b1a666ecSBarry Smith     }
2201b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2202b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22039566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2204b1a666ecSBarry Smith       its--;
2205b1a666ecSBarry Smith     }
2206b1a666ecSBarry Smith     while (its--) {
22079566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22089566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2209b1a666ecSBarry Smith 
2210b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22119566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22129566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2213b1a666ecSBarry Smith 
2214b1a666ecSBarry Smith       /* local sweep */
22159566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2216b1a666ecSBarry Smith     }
2217b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2218b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22199566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2220b1a666ecSBarry Smith       its--;
2221b1a666ecSBarry Smith     }
2222b1a666ecSBarry Smith     while (its--) {
22239566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22249566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2225b1a666ecSBarry Smith 
2226b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22279566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22289566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2229b1a666ecSBarry Smith 
2230b1a666ecSBarry Smith       /* local sweep */
22319566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2232b1a666ecSBarry Smith     }
2233ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2234b1a666ecSBarry Smith 
22359566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2237b1a666ecSBarry Smith }
2238b1a666ecSBarry Smith 
223966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2240d71ae5a4SJacob Faibussowitsch {
224147f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2242a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
224347f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
224447f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
224547f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
224647f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
224747f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
224847f7623dSRémi Lacroix   PetscReal   *work;
224947f7623dSRémi Lacroix 
225047f7623dSRémi Lacroix   PetscFunctionBegin;
22519566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22529566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2253857cbf51SRichard Tran Mills   if (type == NORM_2) {
225447f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
225547f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
225647f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
225747f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
225847f7623dSRémi Lacroix           a_val++;
225947f7623dSRémi Lacroix         }
226047f7623dSRémi Lacroix       }
226147f7623dSRémi Lacroix     }
226247f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
226347f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226447f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226547f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
226647f7623dSRémi Lacroix           b_val++;
226747f7623dSRémi Lacroix         }
226847f7623dSRémi Lacroix       }
226947f7623dSRémi Lacroix     }
2270857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
227147f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
227247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227447f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
227547f7623dSRémi Lacroix           a_val++;
227647f7623dSRémi Lacroix         }
227747f7623dSRémi Lacroix       }
227847f7623dSRémi Lacroix     }
227947f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
228047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228247f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
228347f7623dSRémi Lacroix           b_val++;
228447f7623dSRémi Lacroix         }
228547f7623dSRémi Lacroix       }
228647f7623dSRémi Lacroix     }
2287857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
228847f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229147f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
229247f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
229347f7623dSRémi Lacroix           a_val++;
229447f7623dSRémi Lacroix         }
229547f7623dSRémi Lacroix       }
229647f7623dSRémi Lacroix     }
229747f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229847f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229947f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230047f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
230147f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
230247f7623dSRémi Lacroix           b_val++;
230347f7623dSRémi Lacroix         }
230447f7623dSRémi Lacroix       }
230547f7623dSRémi Lacroix     }
2306857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2307a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2308a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2309a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2310857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2311a873a8cdSSam Reynolds           a_val++;
2312a873a8cdSSam Reynolds         }
2313a873a8cdSSam Reynolds       }
2314a873a8cdSSam Reynolds     }
2315a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2316a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2317a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2318857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2319a873a8cdSSam Reynolds           b_val++;
2320a873a8cdSSam Reynolds         }
2321a873a8cdSSam Reynolds       }
2322a873a8cdSSam Reynolds     }
2323857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2324857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2325857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2326857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2327857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2328857cbf51SRichard Tran Mills           a_val++;
2329857cbf51SRichard Tran Mills         }
2330857cbf51SRichard Tran Mills       }
2331857cbf51SRichard Tran Mills     }
2332857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2333857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2334857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2335857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2336857cbf51SRichard Tran Mills           b_val++;
2337857cbf51SRichard Tran Mills         }
2338857cbf51SRichard Tran Mills       }
2339857cbf51SRichard Tran Mills     }
2340857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2341857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23421c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
234347f7623dSRémi Lacroix   } else {
23441c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
234547f7623dSRémi Lacroix   }
23469566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2347857cbf51SRichard Tran Mills   if (type == NORM_2) {
2348a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2349857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2350a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
235147f7623dSRémi Lacroix   }
23523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
235347f7623dSRémi Lacroix }
235447f7623dSRémi Lacroix 
235566976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2356d71ae5a4SJacob Faibussowitsch {
2357bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2358bbead8a2SBarry Smith 
2359bbead8a2SBarry Smith   PetscFunctionBegin;
23609566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23617b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23627b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23637b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2365bbead8a2SBarry Smith }
2366bbead8a2SBarry Smith 
236766976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2368d71ae5a4SJacob Faibussowitsch {
23697d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23706f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23717d68702bSBarry Smith 
23727d68702bSBarry Smith   PetscFunctionBegin;
23736f33a894SBarry Smith   if (!Y->preallocated) {
23749566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23756f33a894SBarry Smith   } else if (!aij->nz) {
2376b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23779566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2378b83222d8SBarry Smith     aij->nonew = nonew;
23797d68702bSBarry Smith   }
23809566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23827d68702bSBarry Smith }
23838c7482ecSBarry Smith 
238466976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2385d71ae5a4SJacob Faibussowitsch {
23863b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23873b49f96aSBarry Smith 
23883b49f96aSBarry Smith   PetscFunctionBegin;
23895f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
23909566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
23913b49f96aSBarry Smith   if (d) {
23923b49f96aSBarry Smith     PetscInt rstart;
23939566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
23943b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
23953b49f96aSBarry Smith   }
23963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23973b49f96aSBarry Smith }
23983b49f96aSBarry Smith 
239966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2400d71ae5a4SJacob Faibussowitsch {
2401a5b7ff6bSBarry Smith   PetscFunctionBegin;
2402a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2404a5b7ff6bSBarry Smith }
2405a5b7ff6bSBarry Smith 
240617ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
240717ea310bSPierre Jolivet {
240817ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
240917ea310bSPierre Jolivet 
241017ea310bSPierre Jolivet   PetscFunctionBegin;
241117ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
241217ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
241317ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
241417ea310bSPierre Jolivet }
241517ea310bSPierre Jolivet 
24163964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2417cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2418cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2419cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
242097304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24217c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24227c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2423f4259b30SLisandro Dalcin                                        NULL,
2424f4259b30SLisandro Dalcin                                        NULL,
2425f4259b30SLisandro Dalcin                                        NULL,
2426f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2427f4259b30SLisandro Dalcin                                        NULL,
2428f4259b30SLisandro Dalcin                                        NULL,
2429b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2430cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
243197304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24327fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2433cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2434cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2435cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
243697304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2437cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2438cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2439cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2440d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2441f4259b30SLisandro Dalcin                                        NULL,
2442f4259b30SLisandro Dalcin                                        NULL,
2443f4259b30SLisandro Dalcin                                        NULL,
2444f4259b30SLisandro Dalcin                                        NULL,
244526cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2446f4259b30SLisandro Dalcin                                        NULL,
2447f4259b30SLisandro Dalcin                                        NULL,
2448a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2449f4259b30SLisandro Dalcin                                        NULL,
2450d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2451f4259b30SLisandro Dalcin                                        NULL,
2452f4259b30SLisandro Dalcin                                        NULL,
2453f4259b30SLisandro Dalcin                                        NULL,
2454f4259b30SLisandro Dalcin                                        NULL,
2455d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24567dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2457cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2458cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24593c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2460f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2461cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24627d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2463f4259b30SLisandro Dalcin                                        NULL,
24646f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2465f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2466f4259b30SLisandro Dalcin                                        NULL,
2467f4259b30SLisandro Dalcin                                        NULL,
2468f4259b30SLisandro Dalcin                                        NULL,
2469f4259b30SLisandro Dalcin                                        NULL,
247093dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2471f4259b30SLisandro Dalcin                                        NULL,
2472cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
247382094794SBarry Smith                                        MatPermute_MPIBAIJ,
2474cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24757dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2476f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2477f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2478f4259b30SLisandro Dalcin                                        NULL,
2479f4259b30SLisandro Dalcin                                        NULL,
2480f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2481f4259b30SLisandro Dalcin                                        NULL,
2482f4259b30SLisandro Dalcin                                        NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
2484f4259b30SLisandro Dalcin                                        NULL,
2485d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2486f4259b30SLisandro Dalcin                                        NULL,
2487f4259b30SLisandro Dalcin                                        NULL,
2488f4259b30SLisandro Dalcin                                        NULL,
2489f4259b30SLisandro Dalcin                                        NULL,
2490f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2491f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2492f4259b30SLisandro Dalcin                                        NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494f4259b30SLisandro Dalcin                                        NULL,
2495f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
24995bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2500f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        NULL,
2505f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        NULL,
2510f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        NULL,
2515f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
25182726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2519f4259b30SLisandro Dalcin                                        NULL,
2520f4259b30SLisandro Dalcin                                        /*104*/ NULL,
252199cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25228c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        NULL,
2525f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
25293b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2530d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2531f4259b30SLisandro Dalcin                                        NULL,
25324683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                        NULL,
2535f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        NULL,
2538f4259b30SLisandro Dalcin                                        NULL,
2539e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2540f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2541a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25423964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2543f4259b30SLisandro Dalcin                                        NULL,
2544f4259b30SLisandro Dalcin                                        NULL,
2545f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        NULL,
2548f4259b30SLisandro Dalcin                                        NULL,
2549f4259b30SLisandro Dalcin                                        NULL,
2550f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2551f4259b30SLisandro Dalcin                                        NULL,
2552f4259b30SLisandro Dalcin                                        NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                        NULL,
255546533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        NULL,
2558bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2559f4259b30SLisandro Dalcin                                        NULL,
2560d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2561d70f29a3SPierre Jolivet                                        NULL,
2562d70f29a3SPierre Jolivet                                        NULL,
256399a7f59eSMark Adams                                        NULL,
256499a7f59eSMark Adams                                        NULL,
25657fb60732SBarry Smith                                        NULL,
2566dec0b466SHong Zhang                                        /*150*/ NULL,
2567eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
2568eede4a3fSMark Adams                                        NULL};
256979bdfe76SSatish Balay 
2570cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2571c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2572d94109b8SHong Zhang 
257366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2574d71ae5a4SJacob Faibussowitsch {
2575b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2576f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2577f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2578f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2579d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25803bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2581aac34f13SBarry Smith 
2582aac34f13SBarry Smith   PetscFunctionBegin;
25839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2588d0f46423SBarry Smith   m      = B->rmap->n / bs;
2589d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2590d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2591d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2592b8d659d7SLisandro Dalcin 
25935f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
25949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2595aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2596cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
25975f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2598b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
259937cd3c0dSBarry Smith     dlen   = 0;
260037cd3c0dSBarry Smith     olen   = 0;
2601cf12db73SBarry Smith     JJ     = jj + ii[i];
2602b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
260337cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
260437cd3c0dSBarry Smith       else dlen++;
2605aac34f13SBarry Smith       JJ++;
2606aac34f13SBarry Smith     }
260737cd3c0dSBarry Smith     d_nnz[i] = dlen;
260837cd3c0dSBarry Smith     o_nnz[i] = olen;
2609aac34f13SBarry Smith   }
26109566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26119566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2612aac34f13SBarry Smith 
2613b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
261448a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2615b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2616b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2617cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2618cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2619bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2620cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26219566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26223adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26233adadaf3SJed Brown       PetscInt j;
26243adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26253adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26269566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26273adadaf3SJed Brown       }
26283adadaf3SJed Brown     }
2629aac34f13SBarry Smith   }
2630aac34f13SBarry Smith 
26319566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26323bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26333bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26363bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26373bd0feecSPierre Jolivet 
26389566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2640aac34f13SBarry Smith }
2641aac34f13SBarry Smith 
2642aac34f13SBarry Smith /*@C
264311a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2644aac34f13SBarry Smith 
2645d083f849SBarry Smith   Collective
2646aac34f13SBarry Smith 
2647aac34f13SBarry Smith   Input Parameters:
26481c4f3114SJed Brown + B  - the matrix
2649dfb205c3SBarry Smith . bs - the block size
265020f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2651aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2652d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2653aac34f13SBarry Smith 
2654664954b6SBarry Smith   Level: advanced
2655aac34f13SBarry Smith 
265695452b02SPatrick Sanan   Notes:
2657d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2658d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2659d8a51d2aSBarry Smith   called this routine.
2660d8a51d2aSBarry Smith 
266111a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
266211a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26633adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
266411a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26653adadaf3SJed Brown   block column and the second index is over columns within a block.
26663adadaf3SJed Brown 
2667664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2668664954b6SBarry Smith 
26697d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2670aac34f13SBarry Smith @*/
2671d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2672d71ae5a4SJacob Faibussowitsch {
2673aac34f13SBarry Smith   PetscFunctionBegin;
26746ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26756ba663aaSJed Brown   PetscValidType(B, 1);
26766ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2677cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2679aac34f13SBarry Smith }
2680aac34f13SBarry Smith 
2681d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2682d71ae5a4SJacob Faibussowitsch {
2683ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2684535b19f3SBarry Smith   PetscInt     i;
26855d2a9ed1SStefano Zampini   PetscMPIInt  size;
2686a23d5eceSKris Buschelman 
2687a23d5eceSKris Buschelman   PetscFunctionBegin;
2688ad79cf63SBarry Smith   if (B->hash_active) {
2689aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2690ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2691ad79cf63SBarry Smith   }
2692ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
26939566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
26949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2697899cda47SBarry Smith 
2698a23d5eceSKris Buschelman   if (d_nnz) {
2699ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2700a23d5eceSKris Buschelman   }
2701a23d5eceSKris Buschelman   if (o_nnz) {
2702ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2703a23d5eceSKris Buschelman   }
2704a23d5eceSKris Buschelman 
2705a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2706d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2707d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2708d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2709d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2710a23d5eceSKris Buschelman 
2711ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2712d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2713d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2714d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2715d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2716a23d5eceSKris Buschelman 
2717cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2718eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2719cb7b82ddSBarry Smith #else
27209566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2721cb7b82ddSBarry Smith #endif
27229566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27239566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27249566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2725cb7b82ddSBarry Smith 
27269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2727c508b908SBarry Smith 
2728c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27299566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27309566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27319566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27329566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2733c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2734cb7b82ddSBarry Smith 
2735c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2736ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27379566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27389566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27399566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2740c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2741a23d5eceSKris Buschelman 
27429566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27439566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2744526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2745cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2746cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2748a23d5eceSKris Buschelman }
2749a23d5eceSKris Buschelman 
27507087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27517087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27525bf65638SKris Buschelman 
2753d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2754d71ae5a4SJacob Faibussowitsch {
275582094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
275682094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
275782094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
275882094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
275982094794SBarry Smith 
276082094794SBarry Smith   PetscFunctionBegin;
27619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
276282094794SBarry Smith   ii[0] = 0;
276382094794SBarry Smith   for (i = 0; i < M; i++) {
276408401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
276508401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
276682094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27675ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27685ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27699371c9d4SSatish Balay       if (jd[j] == i) {
27709371c9d4SSatish Balay         ii[i + 1]--;
27719371c9d4SSatish Balay         break;
27729371c9d4SSatish Balay       }
27735ee9ba1cSJed Brown     }
277482094794SBarry Smith   }
27759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
277682094794SBarry Smith   cnt = 0;
277782094794SBarry Smith   for (i = 0; i < M; i++) {
277882094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
277982094794SBarry Smith       if (garray[jo[j]] > rstart) break;
278082094794SBarry Smith       jj[cnt++] = garray[jo[j]];
278182094794SBarry Smith     }
278282094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2783ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
278482094794SBarry Smith     }
2785ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
278682094794SBarry Smith   }
27879566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278982094794SBarry Smith }
279082094794SBarry Smith 
2791c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
279262471d69SBarry Smith 
2793cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2794b2573a8aSBarry Smith 
2795d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2796d71ae5a4SJacob Faibussowitsch {
279762471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
279885a69837SSatish Balay   Mat_MPIAIJ  *b;
27995f80ce2aSJacob Faibussowitsch   Mat          B;
280062471d69SBarry Smith 
280162471d69SBarry Smith   PetscFunctionBegin;
28025f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
280362471d69SBarry Smith 
28040f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28050f6d62edSLisandro Dalcin     B = *newmat;
28060f6d62edSLisandro Dalcin   } else {
28079566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28089566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28099566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28109566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28119566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28129566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28130f6d62edSLisandro Dalcin   }
281462471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
281562471d69SBarry Smith 
28160f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28179566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28189566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28190f6d62edSLisandro Dalcin   } else {
28207c612885SStefano Zampini     PetscInt   *garray = a->garray;
28217c612885SStefano Zampini     Mat_SeqAIJ *bB;
28227c612885SStefano Zampini     PetscInt    bs, nnz;
28239566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28249566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28257c612885SStefano Zampini     /* just clear out the data structure */
28267c612885SStefano Zampini     PetscCall(MatDisAssemble_MPIAIJ(B));
28279566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28289566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28297c612885SStefano Zampini 
28307c612885SStefano Zampini     /* Global numbering for b->B columns */
28317c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28327c612885SStefano Zampini     bs  = A->rmap->bs;
28337c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28347c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28357c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28367c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28377c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28387c612885SStefano Zampini     }
28390f6d62edSLisandro Dalcin   }
28409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28420f6d62edSLisandro Dalcin 
2843511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28449566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
284562471d69SBarry Smith   } else {
284662471d69SBarry Smith     *newmat = B;
284762471d69SBarry Smith   }
28483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
284962471d69SBarry Smith }
285062471d69SBarry Smith 
28510bad9183SKris Buschelman /*MC
2852fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28530bad9183SKris Buschelman 
28540bad9183SKris Buschelman    Options Database Keys:
285511a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28568c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28576679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
285867b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28590bad9183SKris Buschelman 
28600bad9183SKris Buschelman    Level: beginner
28610cd7f59aSBarry Smith 
286211a5261eSBarry Smith    Note:
28635e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
286411a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28650bad9183SKris Buschelman 
28665e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28670bad9183SKris Buschelman M*/
28680bad9183SKris Buschelman 
2869cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2870c0cdd4a1SDahai Guo 
2871d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2872d71ae5a4SJacob Faibussowitsch {
2873273d9f13SBarry Smith   Mat_MPIBAIJ *b;
287494ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2875273d9f13SBarry Smith 
2876273d9f13SBarry Smith   PetscFunctionBegin;
28774dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
287882502324SSatish Balay   B->data      = (void *)b;
2879aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2880273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2881273d9f13SBarry Smith 
2882273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28839566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28849566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2885273d9f13SBarry Smith 
2886273d9f13SBarry Smith   /* build local table of row and column ownerships */
28879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2888273d9f13SBarry Smith 
2889273d9f13SBarry Smith   /* build cache for off array entries formed */
28909566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
289126fbe8dcSKarl Rupp 
2892273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28930298fd71SBarry Smith   b->colmap      = NULL;
28940298fd71SBarry Smith   b->garray      = NULL;
2895273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2896273d9f13SBarry Smith 
2897273d9f13SBarry Smith   /* stuff used in block assembly */
2898f4259b30SLisandro Dalcin   b->barray = NULL;
2899273d9f13SBarry Smith 
2900273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2901f4259b30SLisandro Dalcin   b->lvec  = NULL;
2902f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2903273d9f13SBarry Smith 
2904273d9f13SBarry Smith   /* stuff for MatGetRow() */
2905f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2906f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2907273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2908273d9f13SBarry Smith 
2909273d9f13SBarry Smith   /* hash table stuff */
2910f4259b30SLisandro Dalcin   b->ht           = NULL;
2911f4259b30SLisandro Dalcin   b->hd           = NULL;
2912273d9f13SBarry Smith   b->ht_size      = 0;
2913273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2914273d9f13SBarry Smith   b->ht_fact      = 0;
2915273d9f13SBarry Smith   b->ht_total_ct  = 0;
2916273d9f13SBarry Smith   b->ht_insert_ct = 0;
2917273d9f13SBarry Smith 
29187dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29197a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29207a868f3eSHong Zhang 
29219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29247ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29267ea3e4caSstefano_zampini #endif
29279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29349566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
293594ae4db5SBarry Smith 
2936d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29379566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
293894ae4db5SBarry Smith   if (flg) {
293994ae4db5SBarry Smith     PetscReal fact = 1.39;
29409566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29419566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
294294ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29439566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29449566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
294594ae4db5SBarry Smith   }
2946d0609cedSBarry Smith   PetscOptionsEnd();
29473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2948273d9f13SBarry Smith }
2949273d9f13SBarry Smith 
29502920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2951209238afSKris Buschelman /*MC
2952002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2953209238afSKris Buschelman 
295411a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
295511a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2956209238afSKris Buschelman 
2957209238afSKris Buschelman    Options Database Keys:
295811a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2959209238afSKris Buschelman 
2960209238afSKris Buschelman   Level: beginner
2961209238afSKris Buschelman 
296267be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2963209238afSKris Buschelman M*/
2964209238afSKris Buschelman 
2965273d9f13SBarry Smith /*@C
296611a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
296767be906fSBarry Smith   (block compressed row).
2968273d9f13SBarry Smith 
2969c3339decSBarry Smith   Collective
2970273d9f13SBarry Smith 
2971273d9f13SBarry Smith   Input Parameters:
29721c4f3114SJed Brown + B     - the matrix
297311a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
297467be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2975273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2976273d9f13SBarry Smith            submatrix  (same for all local rows)
2977273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2978273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
297967be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
298095742e49SBarry Smith            set it even if it is zero.
2981273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2982273d9f13SBarry Smith            submatrix (same for all local rows).
2983273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2984273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
298567be906fSBarry Smith            each block row) or `NULL`.
2986273d9f13SBarry Smith 
298749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2988273d9f13SBarry Smith 
2989273d9f13SBarry Smith   Options Database Keys:
29908c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
299167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
2992273d9f13SBarry Smith 
299367be906fSBarry Smith   Level: intermediate
299467be906fSBarry Smith 
2995273d9f13SBarry Smith   Notes:
299667be906fSBarry Smith   For good matrix assembly performance
299767be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
299867be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
299967be906fSBarry Smith   performance can be increased by more than a factor of 50.
300067be906fSBarry Smith 
300111a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3002273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
3003273d9f13SBarry Smith 
3004273d9f13SBarry Smith   Storage Information:
3005273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3006273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3007273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3008273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3009273d9f13SBarry Smith 
3010273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
301167be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
301267be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3013273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
301467be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3015273d9f13SBarry Smith 
3016273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3017273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith .vb
3020273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3021a4b1a0f6SJed Brown           --------------------------
3022273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3023273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3024273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3025a4b1a0f6SJed Brown           --------------------------
3026273d9f13SBarry Smith .ve
3027273d9f13SBarry Smith 
3028273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3029273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3030273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
303111a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3032273d9f13SBarry Smith 
303367be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
303467be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3035273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
303620f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3037273d9f13SBarry Smith 
303811a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3039aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
304067be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3041aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3042aa95bbe8SBarry Smith 
304367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3044273d9f13SBarry Smith @*/
3045d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3046d71ae5a4SJacob Faibussowitsch {
3047273d9f13SBarry Smith   PetscFunctionBegin;
30486ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30496ba663aaSJed Brown   PetscValidType(B, 1);
30506ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3051cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3053273d9f13SBarry Smith }
3054273d9f13SBarry Smith 
30552920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
305679bdfe76SSatish Balay /*@C
305711a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
305867be906fSBarry Smith   (block compressed row).
305979bdfe76SSatish Balay 
3060d083f849SBarry Smith   Collective
3061db81eaa0SLois Curfman McInnes 
306279bdfe76SSatish Balay   Input Parameters:
3063db81eaa0SLois Curfman McInnes + comm  - MPI communicator
306411a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
306511a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
306611a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
306792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
306892e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
306911a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
307092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307192e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
307211a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
307311a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
307447a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
307579bdfe76SSatish Balay            submatrix  (same for all local rows)
307647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
307792e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30780298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
307995742e49SBarry Smith            and set it even if it is zero.
308047a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
308179bdfe76SSatish Balay            submatrix (same for all local rows).
308247a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
308392e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30840298fd71SBarry Smith            each block row) or NULL.
308579bdfe76SSatish Balay 
308679bdfe76SSatish Balay   Output Parameter:
308779bdfe76SSatish Balay . A - the matrix
308879bdfe76SSatish Balay 
3089db81eaa0SLois Curfman McInnes   Options Database Keys:
30908c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
309167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
30923ffaccefSLois Curfman McInnes 
309367be906fSBarry Smith   Level: intermediate
309467be906fSBarry Smith 
309567be906fSBarry Smith   Notes:
309677433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
309777433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
309877433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
309977433607SBarry Smith 
310067be906fSBarry Smith   For good matrix assembly performance
310167be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
310267be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
310367be906fSBarry Smith   performance can be increased by more than a factor of 50.
310467be906fSBarry Smith 
310549a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
310649a6f317SBarry Smith 
310747a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
310847a75d0bSBarry Smith 
310979bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
311079bdfe76SSatish Balay   (possibly both).
311179bdfe76SSatish Balay 
311211a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3113be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3114be79a94dSBarry Smith 
311579bdfe76SSatish Balay   Storage Information:
311679bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
311779bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
311879bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
311979bdfe76SSatish Balay   local matrix (a rectangular submatrix).
312079bdfe76SSatish Balay 
312179bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
312279bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
312367be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
312479bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
312567be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
312679bdfe76SSatish Balay 
312779bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
312879bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
312979bdfe76SSatish Balay 
3130db81eaa0SLois Curfman McInnes .vb
3131db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3132a4b1a0f6SJed Brown           --------------------------
3133db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3134db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3135db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3136a4b1a0f6SJed Brown           --------------------------
3137db81eaa0SLois Curfman McInnes .ve
313879bdfe76SSatish Balay 
313979bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
314079bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
314179bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
314211a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
314379bdfe76SSatish Balay 
314467be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
314567be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
314679bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
314720f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
314879bdfe76SSatish Balay 
314942747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
315079bdfe76SSatish Balay @*/
3151d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3152d71ae5a4SJacob Faibussowitsch {
3153b24ad042SBarry Smith   PetscMPIInt size;
315479bdfe76SSatish Balay 
3155d64ed03dSBarry Smith   PetscFunctionBegin;
31569566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31579566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3159273d9f13SBarry Smith   if (size > 1) {
31609566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31619566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3162273d9f13SBarry Smith   } else {
31639566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31649566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31653914022bSBarry Smith   }
31663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
316779bdfe76SSatish Balay }
3168026e39d0SSatish Balay 
3169d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3170d71ae5a4SJacob Faibussowitsch {
31710ac07820SSatish Balay   Mat          mat;
31720ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3173b24ad042SBarry Smith   PetscInt     len = 0;
31740ac07820SSatish Balay 
3175d64ed03dSBarry Smith   PetscFunctionBegin;
3176f4259b30SLisandro Dalcin   *newmat = NULL;
31779566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31789566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31799566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31807fff6886SHong Zhang 
3181420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3182420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3183420957c1SBarry Smith   if (matin->hash_active) {
3184420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3185420957c1SBarry Smith   } else {
3186d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3187273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
31880ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
31897fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
31907fff6886SHong Zhang 
3191273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3192d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
31930ac07820SSatish Balay     a->bs2        = oldmat->bs2;
31940ac07820SSatish Balay     a->mbs        = oldmat->mbs;
31950ac07820SSatish Balay     a->nbs        = oldmat->nbs;
31960ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
31970ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
31980ac07820SSatish Balay 
31990ac07820SSatish Balay     a->size         = oldmat->size;
32000ac07820SSatish Balay     a->rank         = oldmat->rank;
3201aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3202aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3203f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3204f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
32050ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3206f4259b30SLisandro Dalcin     a->barray       = NULL;
3207899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3208899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3209899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3210899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32110ac07820SSatish Balay 
3212133cdb44SSatish Balay     /* hash table stuff */
3213f4259b30SLisandro Dalcin     a->ht           = NULL;
3214f4259b30SLisandro Dalcin     a->hd           = NULL;
3215133cdb44SSatish Balay     a->ht_size      = 0;
3216133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
321725fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3218133cdb44SSatish Balay     a->ht_total_ct  = 0;
3219133cdb44SSatish Balay     a->ht_insert_ct = 0;
3220133cdb44SSatish Balay 
32219566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32220ac07820SSatish Balay     if (oldmat->colmap) {
3223aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3224eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
322548e59246SSatish Balay #else
32269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32279566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
322848e59246SSatish Balay #endif
3229f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32304beb1cfeSHong Zhang 
3231f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32329566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32339566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3234f4259b30SLisandro Dalcin     } else a->garray = NULL;
32350ac07820SSatish Balay 
32369566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32379566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32389566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32397fff6886SHong Zhang 
32409566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32419566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3242420957c1SBarry Smith   }
32439566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32440ac07820SSatish Balay   *newmat = mat;
32453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32460ac07820SSatish Balay }
324757b952d6SSatish Balay 
3248618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3250d71ae5a4SJacob Faibussowitsch {
3251b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3252b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3253b51a4376SLisandro Dalcin   PetscScalar *matvals;
3254b51a4376SLisandro Dalcin 
3255b51a4376SLisandro Dalcin   PetscFunctionBegin;
32569566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3257b51a4376SLisandro Dalcin 
3258b51a4376SLisandro Dalcin   /* read in matrix header */
32599566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32605f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32619371c9d4SSatish Balay   M  = header[1];
32629371c9d4SSatish Balay   N  = header[2];
32639371c9d4SSatish Balay   nz = header[3];
32645f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32655f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32665f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3267b51a4376SLisandro Dalcin 
3268b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32699566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3270618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3271618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3272618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3273b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3274b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3275b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3278b51a4376SLisandro Dalcin 
3279b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32809566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32815f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32829566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32839566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32869371c9d4SSatish Balay   mbs = m / bs;
32879371c9d4SSatish Balay   nbs = n / bs;
3288b51a4376SLisandro Dalcin 
3289b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32919566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32929371c9d4SSatish Balay   rowidxs[0] = 0;
32939371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
32941c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32955f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3296b51a4376SLisandro Dalcin 
3297b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
33009566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3301b51a4376SLisandro Dalcin 
3302b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3303b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3304b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3305618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3306b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3307b51a4376SLisandro Dalcin 
33089566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33099566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33109566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33119566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3312b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33139566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33149566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3315618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3316618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3317618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3318618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3319618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3320618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3321618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3322b51a4376SLisandro Dalcin             } else {
33239566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3324b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3325b51a4376SLisandro Dalcin             }
3326b51a4376SLisandro Dalcin           }
3327618cc2edSLisandro Dalcin         }
3328618cc2edSLisandro Dalcin       }
3329618cc2edSLisandro Dalcin     }
33309566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33319566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33329566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33339566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33349566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3335b51a4376SLisandro Dalcin   }
3336b51a4376SLisandro Dalcin 
3337b51a4376SLisandro Dalcin   /* store matrix values */
3338b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3339b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33409927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3341b51a4376SLisandro Dalcin   }
3342b51a4376SLisandro Dalcin 
33439566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33449566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3348b51a4376SLisandro Dalcin }
3349b51a4376SLisandro Dalcin 
3350d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3351d71ae5a4SJacob Faibussowitsch {
33527f489da9SVaclav Hapla   PetscBool isbinary;
33534683f7a4SShri Abhyankar 
33544683f7a4SShri Abhyankar   PetscFunctionBegin;
33559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33565f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33579566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33594683f7a4SShri Abhyankar }
33604683f7a4SShri Abhyankar 
3361133cdb44SSatish Balay /*@
336211a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3363133cdb44SSatish Balay 
3364133cdb44SSatish Balay   Input Parameters:
3365a2b725a8SWilliam Gropp + mat  - the matrix
3366a2b725a8SWilliam Gropp - fact - factor
3367133cdb44SSatish Balay 
336811a5261eSBarry Smith   Options Database Key:
336911a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3370fee21e36SBarry Smith 
33718c890885SBarry Smith   Level: advanced
33728c890885SBarry Smith 
337367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3374133cdb44SSatish Balay @*/
3375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3376d71ae5a4SJacob Faibussowitsch {
33775bf65638SKris Buschelman   PetscFunctionBegin;
3378cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33805bf65638SKris Buschelman }
33815bf65638SKris Buschelman 
3382d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3383d71ae5a4SJacob Faibussowitsch {
338425fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3385133cdb44SSatish Balay 
3386133cdb44SSatish Balay   PetscFunctionBegin;
3387133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3388133cdb44SSatish Balay   baij->ht_fact = fact;
33893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3390133cdb44SSatish Balay }
3391f2a5309cSSatish Balay 
3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3393d71ae5a4SJacob Faibussowitsch {
3394f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3395ab4d48faSStefano Zampini   PetscBool    flg;
33965fd66863SKarl Rupp 
3397f2a5309cSSatish Balay   PetscFunctionBegin;
33989566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33995f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
340021e72a00SBarry Smith   if (Ad) *Ad = a->A;
340121e72a00SBarry Smith   if (Ao) *Ao = a->B;
340221e72a00SBarry Smith   if (colmap) *colmap = a->garray;
34033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3404f2a5309cSSatish Balay }
340585535b8eSBarry Smith 
340685535b8eSBarry Smith /*
340785535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
340885535b8eSBarry Smith */
340985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
341085535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
341185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
341285535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
341385535b8eSBarry Smith #endif
341485535b8eSBarry Smith 
34152920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
341685535b8eSBarry Smith /*@C
341711a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
341885535b8eSBarry Smith 
3419c3339decSBarry Smith   Collective
342085535b8eSBarry Smith 
342185535b8eSBarry Smith   Input Parameters:
3422fe59aa6dSJacob Faibussowitsch + matin  - the matrix
342385535b8eSBarry Smith . min    - number of input rows
342485535b8eSBarry Smith . im     - input rows
342585535b8eSBarry Smith . nin    - number of input columns
342685535b8eSBarry Smith . in     - input columns
342785535b8eSBarry Smith . v      - numerical values input
342811a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
342985535b8eSBarry Smith 
343020f4b53cSBarry Smith   Level: advanced
343120f4b53cSBarry Smith 
3432fe59aa6dSJacob Faibussowitsch   Developer Notes:
343311a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
343485535b8eSBarry Smith 
343567be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
343685535b8eSBarry Smith @*/
343766976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3438d71ae5a4SJacob Faibussowitsch {
343985535b8eSBarry Smith   /* convert input arguments to C version */
344085535b8eSBarry Smith   Mat        mat = *matin;
344185535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
344285535b8eSBarry Smith   InsertMode addv = *addvin;
344385535b8eSBarry Smith 
344485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
344585535b8eSBarry Smith   const MatScalar *value;
344685535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3447ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
344885535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
344985535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3450d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
345185535b8eSBarry Smith 
345285535b8eSBarry Smith   PetscFunctionBegin;
345385535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
345426fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34555f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34565f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
345785535b8eSBarry Smith   if (mat->assembled) {
345885535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
345985535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
346085535b8eSBarry Smith   }
34619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
346285535b8eSBarry Smith 
346385535b8eSBarry Smith   if (!barray) {
34649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
346585535b8eSBarry Smith     baij->barray = barray;
346685535b8eSBarry Smith   }
346785535b8eSBarry Smith 
346826fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
346926fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
347026fbe8dcSKarl Rupp 
347185535b8eSBarry Smith   for (i = 0; i < m; i++) {
347285535b8eSBarry Smith     if (im[i] < 0) continue;
34736bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
347485535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
347585535b8eSBarry Smith       row = im[i] - rstart;
347685535b8eSBarry Smith       for (j = 0; j < n; j++) {
347785535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
347885535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
347985535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
348085535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
348185535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
348285535b8eSBarry Smith         } else { /* Here a copy is required */
348385535b8eSBarry Smith           if (roworiented) {
348485535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
348585535b8eSBarry Smith           } else {
348685535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
348785535b8eSBarry Smith           }
348885535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3489ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
349085535b8eSBarry Smith           }
349185535b8eSBarry Smith           barray -= bs2;
349285535b8eSBarry Smith         }
349385535b8eSBarry Smith 
349485535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
349585535b8eSBarry Smith           col = in[j] - cstart;
34969566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3497f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3498f7d195e4SLawrence Mitchell           continue;
3499f7d195e4SLawrence Mitchell         } else {
3500f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
350185535b8eSBarry Smith           if (mat->was_assembled) {
350248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
350385535b8eSBarry Smith 
350485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
350585535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35069371c9d4SSatish Balay             {
35079371c9d4SSatish Balay               PetscInt data;
3508eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
350908401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
351085535b8eSBarry Smith             }
351185535b8eSBarry Smith   #else
351208401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
351385535b8eSBarry Smith   #endif
351485535b8eSBarry Smith #endif
351585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3516eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
351785535b8eSBarry Smith             col = (col - 1) / bs;
351885535b8eSBarry Smith #else
351985535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
352085535b8eSBarry Smith #endif
3521f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35229566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
352385535b8eSBarry Smith               col = in[j];
352485535b8eSBarry Smith             }
352526fbe8dcSKarl Rupp           } else col = in[j];
35269566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
352785535b8eSBarry Smith         }
352885535b8eSBarry Smith       }
352985535b8eSBarry Smith     } else {
353085535b8eSBarry Smith       if (!baij->donotstash) {
353185535b8eSBarry Smith         if (roworiented) {
35329566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
353385535b8eSBarry Smith         } else {
35349566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
353585535b8eSBarry Smith         }
353685535b8eSBarry Smith       }
353785535b8eSBarry Smith     }
353885535b8eSBarry Smith   }
353985535b8eSBarry Smith 
354085535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
354385535b8eSBarry Smith }
3544dfb205c3SBarry Smith 
3545dfb205c3SBarry Smith /*@
3546d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3547dfb205c3SBarry Smith 
3548d083f849SBarry Smith   Collective
3549dfb205c3SBarry Smith 
3550dfb205c3SBarry Smith   Input Parameters:
3551dfb205c3SBarry Smith + comm - MPI communicator
3552dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
355311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3554dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3555d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3556d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3557d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3558d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3559483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3560dfb205c3SBarry Smith . j    - column indices
3561dfb205c3SBarry Smith - a    - matrix values
3562dfb205c3SBarry Smith 
3563dfb205c3SBarry Smith   Output Parameter:
3564dfb205c3SBarry Smith . mat - the matrix
3565dfb205c3SBarry Smith 
3566dfb205c3SBarry Smith   Level: intermediate
3567dfb205c3SBarry Smith 
3568dfb205c3SBarry Smith   Notes:
356967be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3570dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
357111a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3572dfb205c3SBarry Smith 
35733adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35743adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35753adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35763adadaf3SJed Brown   with column-major ordering within blocks.
35773adadaf3SJed Brown 
3578d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3579dfb205c3SBarry Smith 
358067be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35817d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3582dfb205c3SBarry Smith @*/
3583d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3584d71ae5a4SJacob Faibussowitsch {
3585dfb205c3SBarry Smith   PetscFunctionBegin;
35865f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35875f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35889566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35899566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35909566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35919566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35929566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35939566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35949566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35959566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
35963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3597dfb205c3SBarry Smith }
3598e561ad89SHong Zhang 
3599d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3600d71ae5a4SJacob Faibussowitsch {
3601bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3602bd153df0SHong Zhang   PetscInt    *indx;
3603bd153df0SHong Zhang   PetscScalar *values;
3604e561ad89SHong Zhang 
3605e561ad89SHong Zhang   PetscFunctionBegin;
36069566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3607bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3608bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36092c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3610bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
361177f764caSHong Zhang     PetscMPIInt  rank, size;
3612e561ad89SHong Zhang 
36139566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36149371c9d4SSatish Balay     mbs = m / bs;
36159371c9d4SSatish Balay     Nbs = N / cbs;
361648a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3617da91a574SPierre Jolivet     nbs = n / cbs;
3618e561ad89SHong Zhang 
36199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3620d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
362177f764caSHong Zhang 
36229566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36239566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
362477f764caSHong Zhang     if (rank == size - 1) {
362577f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36265f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
362777f764caSHong Zhang     }
362877f764caSHong Zhang 
3629d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3630bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36319566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3632647a6520SHong Zhang       nnz = nnz / bs;
3633647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36349566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36359566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3636e561ad89SHong Zhang     }
36379566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3638e561ad89SHong Zhang 
36399566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36409566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36419566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36429566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36439566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36449566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3645d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36469566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3647e561ad89SHong Zhang   }
3648e561ad89SHong Zhang 
3649bd153df0SHong Zhang   /* numeric phase */
36509566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36519566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3652e561ad89SHong Zhang 
3653e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36549566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3655e561ad89SHong Zhang     Ii = i + rstart;
36569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36579566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3658e561ad89SHong Zhang   }
36599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3662e561ad89SHong Zhang }
3663