xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision e20fef11c1a1457fc77d0de77d14a2dd6b3370e4)
1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
2*e20fef11SSatish Balay static char vcid[] = "$Id: mpibaij.c,v 1.125 1998/05/29 18:52:46 bsmith Exp balay $";
379bdfe76SSatish Balay #endif
479bdfe76SSatish Balay 
52526cff3SSatish Balay #include "pinclude/pviewer.h"         /*I "mat.h" I*/
670f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h"
7c16cb8f2SBarry Smith #include "src/vec/vecimpl.h"
879bdfe76SSatish Balay 
957b952d6SSatish Balay 
1057b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat);
1157b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat);
12d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int);
13d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **);
143b2fbd54SBarry Smith 
15537820f0SBarry Smith /*
16537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
1757b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
1857b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
1957b952d6SSatish Balay    length of colmap equals the global matrix length.
2057b952d6SSatish Balay */
215615d1e5SSatish Balay #undef __FUNC__
225615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private"
2357b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat)
2457b952d6SSatish Balay {
2557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
2657b952d6SSatish Balay   Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data;
27928fc39bSSatish Balay   int         nbs = B->nbs,i,bs=B->bs;;
2857b952d6SSatish Balay 
29d64ed03dSBarry Smith   PetscFunctionBegin;
30758f045eSSatish Balay   baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap);
3157b952d6SSatish Balay   PLogObjectMemory(mat,baij->Nbs*sizeof(int));
3257b952d6SSatish Balay   PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));
33928fc39bSSatish Balay   for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1;
343a40ed3dSBarry Smith   PetscFunctionReturn(0);
3557b952d6SSatish Balay }
3657b952d6SSatish Balay 
3780c1aa95SSatish Balay #define CHUNKSIZE  10
3880c1aa95SSatish Balay 
39f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
4080c1aa95SSatish Balay { \
4180c1aa95SSatish Balay  \
4280c1aa95SSatish Balay     brow = row/bs;  \
4380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
44ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
4580c1aa95SSatish Balay       bcol = col/bs; \
4680c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
47ab26458aSBarry Smith       low = 0; high = nrow; \
48ab26458aSBarry Smith       while (high-low > 3) { \
49ab26458aSBarry Smith         t = (low+high)/2; \
50ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
51ab26458aSBarry Smith         else              low  = t; \
52ab26458aSBarry Smith       } \
53ab26458aSBarry Smith       for ( _i=low; _i<high; _i++ ) { \
5480c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
5580c1aa95SSatish Balay         if (rp[_i] == bcol) { \
5680c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
57eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
58eada6651SSatish Balay           else                    *bap  = value;  \
59ac7a638eSSatish Balay           goto a_noinsert; \
6080c1aa95SSatish Balay         } \
6180c1aa95SSatish Balay       } \
6289280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
63a8c6a408SBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
6480c1aa95SSatish Balay       if (nrow >= rmax) { \
6580c1aa95SSatish Balay         /* there is no extra room in row, therefore enlarge */ \
6680c1aa95SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
6780c1aa95SSatish Balay         Scalar *new_a; \
6880c1aa95SSatish Balay  \
69a8c6a408SBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
7089280ab3SLois Curfman McInnes  \
7180c1aa95SSatish Balay         /* malloc new storage space */ \
7280c1aa95SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \
7380c1aa95SSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
7480c1aa95SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
7580c1aa95SSatish Balay         new_i   = new_j + new_nz; \
7680c1aa95SSatish Balay  \
7780c1aa95SSatish Balay         /* copy over old data into new slots */ \
7880c1aa95SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \
7980c1aa95SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
8080c1aa95SSatish Balay         PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \
8180c1aa95SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
8280c1aa95SSatish Balay         PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \
8380c1aa95SSatish Balay                                                            len*sizeof(int)); \
8480c1aa95SSatish Balay         PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \
8580c1aa95SSatish Balay         PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \
8680c1aa95SSatish Balay         PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
8780c1aa95SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));  \
8880c1aa95SSatish Balay         /* free up old matrix storage */ \
8980c1aa95SSatish Balay         PetscFree(a->a);  \
9080c1aa95SSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \
9180c1aa95SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
9280c1aa95SSatish Balay         a->singlemalloc = 1; \
9380c1aa95SSatish Balay  \
9480c1aa95SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
95ac7a638eSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
9680c1aa95SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
9780c1aa95SSatish Balay         a->maxnz += bs2*CHUNKSIZE; \
9880c1aa95SSatish Balay         a->reallocs++; \
9980c1aa95SSatish Balay         a->nz++; \
10080c1aa95SSatish Balay       } \
10180c1aa95SSatish Balay       N = nrow++ - 1;  \
10280c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
10380c1aa95SSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
10480c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
10580c1aa95SSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \
10680c1aa95SSatish Balay       } \
10780c1aa95SSatish Balay       if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));  \
10880c1aa95SSatish Balay       rp[_i]                      = bcol;  \
10980c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
110ac7a638eSSatish Balay       a_noinsert:; \
11180c1aa95SSatish Balay     ailen[brow] = nrow; \
11280c1aa95SSatish Balay }
11357b952d6SSatish Balay 
114ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
115ac7a638eSSatish Balay { \
116ac7a638eSSatish Balay  \
117ac7a638eSSatish Balay     brow = row/bs;  \
118ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
119ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
120ac7a638eSSatish Balay       bcol = col/bs; \
121ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
122ac7a638eSSatish Balay       low = 0; high = nrow; \
123ac7a638eSSatish Balay       while (high-low > 3) { \
124ac7a638eSSatish Balay         t = (low+high)/2; \
125ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
126ac7a638eSSatish Balay         else              low  = t; \
127ac7a638eSSatish Balay       } \
128ac7a638eSSatish Balay       for ( _i=low; _i<high; _i++ ) { \
129ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
130ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
131ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
132ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
133ac7a638eSSatish Balay           else                    *bap  = value;  \
134ac7a638eSSatish Balay           goto b_noinsert; \
135ac7a638eSSatish Balay         } \
136ac7a638eSSatish Balay       } \
13789280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
138a8c6a408SBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
139ac7a638eSSatish Balay       if (nrow >= rmax) { \
140ac7a638eSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
14174c639caSSatish Balay         int    new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
142ac7a638eSSatish Balay         Scalar *new_a; \
143ac7a638eSSatish Balay  \
144a8c6a408SBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
14589280ab3SLois Curfman McInnes  \
146ac7a638eSSatish Balay         /* malloc new storage space */ \
14774c639caSSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \
148ac7a638eSSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
149ac7a638eSSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
150ac7a638eSSatish Balay         new_i   = new_j + new_nz; \
151ac7a638eSSatish Balay  \
152ac7a638eSSatish Balay         /* copy over old data into new slots */ \
153ac7a638eSSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \
15474c639caSSatish Balay         for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
155ac7a638eSSatish Balay         PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int)); \
156ac7a638eSSatish Balay         len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
157ac7a638eSSatish Balay         PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \
158ac7a638eSSatish Balay                                                            len*sizeof(int)); \
159ac7a638eSSatish Balay         PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar)); \
160ac7a638eSSatish Balay         PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \
161ac7a638eSSatish Balay         PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
162ac7a638eSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar));  \
163ac7a638eSSatish Balay         /* free up old matrix storage */ \
16474c639caSSatish Balay         PetscFree(b->a);  \
16574c639caSSatish Balay         if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \
16674c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
16774c639caSSatish Balay         b->singlemalloc = 1; \
168ac7a638eSSatish Balay  \
169ac7a638eSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
170ac7a638eSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
17174c639caSSatish Balay         PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
17274c639caSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
17374c639caSSatish Balay         b->reallocs++; \
17474c639caSSatish Balay         b->nz++; \
175ac7a638eSSatish Balay       } \
176ac7a638eSSatish Balay       N = nrow++ - 1;  \
177ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
178ac7a638eSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
179ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
180ac7a638eSSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \
181ac7a638eSSatish Balay       } \
182ac7a638eSSatish Balay       if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));  \
183ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
184ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
185ac7a638eSSatish Balay       b_noinsert:; \
186ac7a638eSSatish Balay     bilen[brow] = nrow; \
187ac7a638eSSatish Balay }
188ac7a638eSSatish Balay 
1895615d1e5SSatish Balay #undef __FUNC__
1905615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ"
191ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
19257b952d6SSatish Balay {
19357b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
19457b952d6SSatish Balay   Scalar      value;
1954fa0d573SSatish Balay   int         ierr,i,j,row,col;
1964fa0d573SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
1974fa0d573SSatish Balay   int         rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
1984fa0d573SSatish Balay   int         cend_orig=baij->cend_bs,bs=baij->bs;
19957b952d6SSatish Balay 
200eada6651SSatish Balay   /* Some Variables required in the macro */
20180c1aa95SSatish Balay   Mat         A = baij->A;
20280c1aa95SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data;
203ac7a638eSSatish Balay   int         *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
204ac7a638eSSatish Balay   Scalar      *aa=a->a;
205ac7a638eSSatish Balay 
206ac7a638eSSatish Balay   Mat         B = baij->B;
207ac7a638eSSatish Balay   Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data;
208ac7a638eSSatish Balay   int         *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
209ac7a638eSSatish Balay   Scalar      *ba=b->a;
210ac7a638eSSatish Balay 
211ac7a638eSSatish Balay   int         *rp,ii,nrow,_i,rmax,N,brow,bcol;
212ab26458aSBarry Smith   int         low,high,t,ridx,cidx,bs2=a->bs2;
213ac7a638eSSatish Balay   Scalar      *ap,*bap;
21480c1aa95SSatish Balay 
215d64ed03dSBarry Smith   PetscFunctionBegin;
21657b952d6SSatish Balay   for ( i=0; i<m; i++ ) {
2173a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
218a8c6a408SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
219a8c6a408SBarry Smith     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
220639f9d9dSBarry Smith #endif
22157b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22257b952d6SSatish Balay       row = im[i] - rstart_orig;
22357b952d6SSatish Balay       for ( j=0; j<n; j++ ) {
22457b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22557b952d6SSatish Balay           col = in[j] - cstart_orig;
22657b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
227f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
22880c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
22957b952d6SSatish Balay         }
2303a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
231a8c6a408SBarry Smith         else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");}
232a8c6a408SBarry Smith         else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");}
233639f9d9dSBarry Smith #endif
23457b952d6SSatish Balay         else {
23557b952d6SSatish Balay           if (mat->was_assembled) {
236905e6a2fSBarry Smith             if (!baij->colmap) {
237905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
238905e6a2fSBarry Smith             }
239905e6a2fSBarry Smith             col = baij->colmap[in[j]/bs] - 1 + in[j]%bs;
24057b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24157b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
24257b952d6SSatish Balay               col =  in[j];
2439bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2449bf004c3SSatish Balay               B = baij->B;
2459bf004c3SSatish Balay               b = (Mat_SeqBAIJ *) (B)->data;
2469bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2479bf004c3SSatish Balay               ba=b->a;
24857b952d6SSatish Balay             }
249d64ed03dSBarry Smith           } else col = in[j];
25057b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
251ac7a638eSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
252ac7a638eSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25357b952d6SSatish Balay         }
25457b952d6SSatish Balay       }
255d64ed03dSBarry Smith     } else {
25690f02eecSBarry Smith       if (roworiented && !baij->donotstash) {
25757b952d6SSatish Balay         ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr);
258d64ed03dSBarry Smith       } else {
25990f02eecSBarry Smith         if (!baij->donotstash) {
26057b952d6SSatish Balay           row = im[i];
26157b952d6SSatish Balay 	  for ( j=0; j<n; j++ ) {
26257b952d6SSatish Balay 	    ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr);
26357b952d6SSatish Balay           }
26457b952d6SSatish Balay         }
26557b952d6SSatish Balay       }
26657b952d6SSatish Balay     }
26790f02eecSBarry Smith   }
2683a40ed3dSBarry Smith   PetscFunctionReturn(0);
26957b952d6SSatish Balay }
27057b952d6SSatish Balay 
271ab26458aSBarry Smith extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode);
272ab26458aSBarry Smith #undef __FUNC__
273ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ"
274ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
275ab26458aSBarry Smith {
276ab26458aSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
27730793edcSSatish Balay   Scalar      *value,*barray=baij->barray;
278abef11f7SSatish Balay   int         ierr,i,j,ii,jj,row,col,k,l;
279ab26458aSBarry Smith   int         roworiented = baij->roworiented,rstart=baij->rstart ;
280ab26458aSBarry Smith   int         rend=baij->rend,cstart=baij->cstart,stepval;
281ab26458aSBarry Smith   int         cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
282ab26458aSBarry Smith 
28330793edcSSatish Balay   if(!barray) {
28447513183SBarry Smith     baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(barray);
28530793edcSSatish Balay   }
28630793edcSSatish Balay 
287ab26458aSBarry Smith   if (roworiented) {
288ab26458aSBarry Smith     stepval = (n-1)*bs;
289ab26458aSBarry Smith   } else {
290ab26458aSBarry Smith     stepval = (m-1)*bs;
291ab26458aSBarry Smith   }
292ab26458aSBarry Smith   for ( i=0; i<m; i++ ) {
2933a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
294a8c6a408SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
295a8c6a408SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
296ab26458aSBarry Smith #endif
297ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
298ab26458aSBarry Smith       row = im[i] - rstart;
299ab26458aSBarry Smith       for ( j=0; j<n; j++ ) {
30015b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30115b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
30215b57d14SSatish Balay           barray = v + i*bs2;
30315b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
30415b57d14SSatish Balay           barray = v + j*bs2;
30515b57d14SSatish Balay         } else { /* Here a copy is required */
306ab26458aSBarry Smith           if (roworiented) {
307ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
308ab26458aSBarry Smith           } else {
309ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
310abef11f7SSatish Balay           }
31147513183SBarry Smith           for ( ii=0; ii<bs; ii++,value+=stepval ) {
31247513183SBarry Smith             for (jj=0; jj<bs; jj++ ) {
31330793edcSSatish Balay               *barray++  = *value++;
31447513183SBarry Smith             }
31547513183SBarry Smith           }
31630793edcSSatish Balay           barray -=bs2;
31715b57d14SSatish Balay         }
318abef11f7SSatish Balay 
319abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
320abef11f7SSatish Balay           col  = in[j] - cstart;
32130793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
322ab26458aSBarry Smith         }
3233a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
324a8c6a408SBarry Smith         else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");}
325a8c6a408SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");}
326ab26458aSBarry Smith #endif
327ab26458aSBarry Smith         else {
328ab26458aSBarry Smith           if (mat->was_assembled) {
329ab26458aSBarry Smith             if (!baij->colmap) {
330ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
331ab26458aSBarry Smith             }
332a5eb4965SSatish Balay 
3333a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
334a8c6a408SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");}
335a5eb4965SSatish Balay #endif
336a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
337ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
338ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
339ab26458aSBarry Smith               col =  in[j];
340ab26458aSBarry Smith             }
341ab26458aSBarry Smith           }
342ab26458aSBarry Smith           else col = in[j];
34330793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
344ab26458aSBarry Smith         }
345ab26458aSBarry Smith       }
346d64ed03dSBarry Smith     } else {
347ab26458aSBarry Smith       if (!baij->donotstash) {
348ab26458aSBarry Smith         if (roworiented ) {
349abef11f7SSatish Balay           row   = im[i]*bs;
350abef11f7SSatish Balay           value = v + i*(stepval+bs)*bs;
351abef11f7SSatish Balay           for ( j=0; j<bs; j++,row++ ) {
352abef11f7SSatish Balay             for ( k=0; k<n; k++ ) {
353abef11f7SSatish Balay               for ( col=in[k]*bs,l=0; l<bs; l++,col++) {
354abef11f7SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
355abef11f7SSatish Balay               }
356ab26458aSBarry Smith             }
357ab26458aSBarry Smith           }
358d64ed03dSBarry Smith         } else {
359ab26458aSBarry Smith           for ( j=0; j<n; j++ ) {
360abef11f7SSatish Balay             value = v + j*(stepval+bs)*bs + i*bs;
361abef11f7SSatish Balay             col   = in[j]*bs;
362abef11f7SSatish Balay             for ( k=0; k<bs; k++,col++,value+=stepval) {
363abef11f7SSatish Balay               for ( row = im[i]*bs,l=0; l<bs; l++,row++) {
364abef11f7SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
365ab26458aSBarry Smith               }
366ab26458aSBarry Smith             }
367ab26458aSBarry Smith           }
368abef11f7SSatish Balay         }
369abef11f7SSatish Balay       }
370ab26458aSBarry Smith     }
371ab26458aSBarry Smith   }
3723a40ed3dSBarry Smith   PetscFunctionReturn(0);
373ab26458aSBarry Smith }
3740bdbc534SSatish Balay #include <math.h>
3750bdbc534SSatish Balay #define HASH_KEY 0.6180339887
376c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
377c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
378c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
3795615d1e5SSatish Balay #undef __FUNC__
3800bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT"
3810bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
3820bdbc534SSatish Balay {
3830bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
3840bdbc534SSatish Balay   int         ierr,i,j,row,col;
3850bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
386c2760754SSatish Balay   int         rend_orig=baij->rend_bs,Nbs=baij->Nbs;
387c2760754SSatish Balay   int         h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx;
388c2760754SSatish Balay   double      tmp;
389b9e4cc15SSatish Balay   Scalar      ** HD = baij->hd,value;
3904a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g)
3914a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3924a15367fSSatish Balay #endif
3930bdbc534SSatish Balay 
3940bdbc534SSatish Balay   PetscFunctionBegin;
3950bdbc534SSatish Balay 
3960bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
3970bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g)
3980bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
3990bdbc534SSatish Balay     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
4000bdbc534SSatish Balay #endif
4010bdbc534SSatish Balay       row = im[i];
402c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4030bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
4040bdbc534SSatish Balay         col = in[j];
4050bdbc534SSatish Balay         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
4060bdbc534SSatish Balay         /* Look up into the Hash Table */
407c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
408c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4090bdbc534SSatish Balay 
410c2760754SSatish Balay 
411c2760754SSatish Balay         idx = h1;
412187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
413187ce0cbSSatish Balay         insert_ct++;
414187ce0cbSSatish Balay         total_ct++;
415187ce0cbSSatish Balay         if (HT[idx] != key) {
416187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
417187ce0cbSSatish Balay           if (idx == size) {
418187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
419187ce0cbSSatish Balay             if (idx == h1) {
420187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
421187ce0cbSSatish Balay             }
422187ce0cbSSatish Balay           }
423187ce0cbSSatish Balay         }
424187ce0cbSSatish Balay #else
425c2760754SSatish Balay         if (HT[idx] != key) {
426c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
427c2760754SSatish Balay           if (idx == size) {
428c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
429c2760754SSatish Balay             if (idx == h1) {
430c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
431c2760754SSatish Balay             }
432c2760754SSatish Balay           }
433c2760754SSatish Balay         }
434187ce0cbSSatish Balay #endif
435c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
436c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
437c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4380bdbc534SSatish Balay       }
4390bdbc534SSatish Balay     } else {
4400bdbc534SSatish Balay       if (roworiented && !baij->donotstash) {
4410bdbc534SSatish Balay         ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr);
4420bdbc534SSatish Balay       } else {
4430bdbc534SSatish Balay         if (!baij->donotstash) {
4440bdbc534SSatish Balay           row = im[i];
4450bdbc534SSatish Balay 	  for ( j=0; j<n; j++ ) {
4460bdbc534SSatish Balay 	    ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr);
4470bdbc534SSatish Balay           }
4480bdbc534SSatish Balay         }
4490bdbc534SSatish Balay       }
4500bdbc534SSatish Balay     }
4510bdbc534SSatish Balay   }
452187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
453187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
454187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
455187ce0cbSSatish Balay #endif
4560bdbc534SSatish Balay   PetscFunctionReturn(0);
4570bdbc534SSatish Balay }
4580bdbc534SSatish Balay 
4590bdbc534SSatish Balay #undef __FUNC__
4600bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT"
4610bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
4620bdbc534SSatish Balay {
4630bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
4640bdbc534SSatish Balay   int         ierr,i,j,ii,jj,row,col,k,l;
4650bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart=baij->rstart ;
466b4cc0f5aSSatish Balay   int         rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2;
467c2760754SSatish Balay   int         h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
468c2760754SSatish Balay   double      tmp;
469187ce0cbSSatish Balay   Scalar      ** HD = baij->hd,*value,*v_t,*baij_a;
4704a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g)
4714a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4724a15367fSSatish Balay #endif
4730bdbc534SSatish Balay 
474d0a41580SSatish Balay   PetscFunctionBegin;
475d0a41580SSatish Balay 
4760bdbc534SSatish Balay   if (roworiented) {
4770bdbc534SSatish Balay     stepval = (n-1)*bs;
4780bdbc534SSatish Balay   } else {
4790bdbc534SSatish Balay     stepval = (m-1)*bs;
4800bdbc534SSatish Balay   }
4810bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
4820bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g)
4830bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
4840bdbc534SSatish Balay     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
4850bdbc534SSatish Balay #endif
4860bdbc534SSatish Balay     row   = im[i];
487187ce0cbSSatish Balay     v_t   = v + i*bs2;
488c2760754SSatish Balay     if (row >= rstart && row < rend) {
4890bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
4900bdbc534SSatish Balay         col = in[j];
4910bdbc534SSatish Balay 
4920bdbc534SSatish Balay         /* Look up into the Hash Table */
493c2760754SSatish Balay         key = row*Nbs+col+1;
494c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4950bdbc534SSatish Balay 
496c2760754SSatish Balay         idx = h1;
497187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
498187ce0cbSSatish Balay         total_ct++;
499187ce0cbSSatish Balay         insert_ct++;
500187ce0cbSSatish Balay        if (HT[idx] != key) {
501187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
502187ce0cbSSatish Balay           if (idx == size) {
503187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
504187ce0cbSSatish Balay             if (idx == h1) {
505187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
506187ce0cbSSatish Balay             }
507187ce0cbSSatish Balay           }
508187ce0cbSSatish Balay         }
509187ce0cbSSatish Balay #else
510c2760754SSatish Balay         if (HT[idx] != key) {
511c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
512c2760754SSatish Balay           if (idx == size) {
513c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
514c2760754SSatish Balay             if (idx == h1) {
515c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
516c2760754SSatish Balay             }
517c2760754SSatish Balay           }
518c2760754SSatish Balay         }
519187ce0cbSSatish Balay #endif
520c2760754SSatish Balay         baij_a = HD[idx];
5210bdbc534SSatish Balay         if (roworiented) {
522c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
523187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
524187ce0cbSSatish Balay           value = v_t;
525187ce0cbSSatish Balay           v_t  += bs;
526fef45726SSatish Balay           if (addv == ADD_VALUES) {
527c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
528c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
529fef45726SSatish Balay                 baij_a[jj]  += *value++;
530b4cc0f5aSSatish Balay               }
531b4cc0f5aSSatish Balay             }
532fef45726SSatish Balay           } else {
533c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
534c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
535fef45726SSatish Balay                 baij_a[jj]  = *value++;
536fef45726SSatish Balay               }
537fef45726SSatish Balay             }
538fef45726SSatish Balay           }
5390bdbc534SSatish Balay         } else {
5400bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
541fef45726SSatish Balay           if (addv == ADD_VALUES) {
542b4cc0f5aSSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
5430bdbc534SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
544fef45726SSatish Balay                 baij_a[jj]  += *value++;
545fef45726SSatish Balay               }
546fef45726SSatish Balay             }
547fef45726SSatish Balay           } else {
548fef45726SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
549fef45726SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
550fef45726SSatish Balay                 baij_a[jj]  = *value++;
551fef45726SSatish Balay               }
552b4cc0f5aSSatish Balay             }
5530bdbc534SSatish Balay           }
5540bdbc534SSatish Balay         }
5550bdbc534SSatish Balay       }
5560bdbc534SSatish Balay     } else {
5570bdbc534SSatish Balay       if (!baij->donotstash) {
5580bdbc534SSatish Balay         if (roworiented ) {
5590bdbc534SSatish Balay           row   = im[i]*bs;
5600bdbc534SSatish Balay           value = v + i*(stepval+bs)*bs;
5610bdbc534SSatish Balay           for ( j=0; j<bs; j++,row++ ) {
5620bdbc534SSatish Balay             for ( k=0; k<n; k++ ) {
5630bdbc534SSatish Balay               for ( col=in[k]*bs,l=0; l<bs; l++,col++) {
5640bdbc534SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
5650bdbc534SSatish Balay               }
5660bdbc534SSatish Balay             }
5670bdbc534SSatish Balay           }
5680bdbc534SSatish Balay         } else {
5690bdbc534SSatish Balay           for ( j=0; j<n; j++ ) {
5700bdbc534SSatish Balay             value = v + j*(stepval+bs)*bs + i*bs;
5710bdbc534SSatish Balay             col   = in[j]*bs;
5720bdbc534SSatish Balay             for ( k=0; k<bs; k++,col++,value+=stepval) {
5730bdbc534SSatish Balay               for ( row = im[i]*bs,l=0; l<bs; l++,row++) {
5740bdbc534SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
5750bdbc534SSatish Balay               }
5760bdbc534SSatish Balay             }
5770bdbc534SSatish Balay           }
5780bdbc534SSatish Balay         }
5790bdbc534SSatish Balay       }
5800bdbc534SSatish Balay     }
5810bdbc534SSatish Balay   }
582187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
583187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
584187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
585187ce0cbSSatish Balay #endif
5860bdbc534SSatish Balay   PetscFunctionReturn(0);
5870bdbc534SSatish Balay }
588133cdb44SSatish Balay 
5890bdbc534SSatish Balay #undef __FUNC__
5905615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ"
591ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
592d6de1c52SSatish Balay {
593d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
594d6de1c52SSatish Balay   int        bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs;
595d6de1c52SSatish Balay   int        bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col;
596d6de1c52SSatish Balay 
597133cdb44SSatish Balay   PetscFunctionBegin;
598d6de1c52SSatish Balay   for ( i=0; i<m; i++ ) {
599a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
600a8c6a408SBarry Smith     if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
601d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
602d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
603d6de1c52SSatish Balay       for ( j=0; j<n; j++ ) {
604a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
605a8c6a408SBarry Smith         if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
606d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
607d6de1c52SSatish Balay           col = idxn[j] - bscstart;
60898dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
609d64ed03dSBarry Smith         } else {
610905e6a2fSBarry Smith           if (!baij->colmap) {
611905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
612905e6a2fSBarry Smith           }
613e60e1c95SSatish Balay           if((baij->colmap[idxn[j]/bs]-1 < 0) ||
614dcb20de4SSatish Balay              (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
615d9d09a02SSatish Balay           else {
616dcb20de4SSatish Balay             col  = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs;
61798dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
618d6de1c52SSatish Balay           }
619d6de1c52SSatish Balay         }
620d6de1c52SSatish Balay       }
621d64ed03dSBarry Smith     } else {
622a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
623d6de1c52SSatish Balay     }
624d6de1c52SSatish Balay   }
6253a40ed3dSBarry Smith  PetscFunctionReturn(0);
626d6de1c52SSatish Balay }
627d6de1c52SSatish Balay 
6285615d1e5SSatish Balay #undef __FUNC__
6295615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ"
630ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm)
631d6de1c52SSatish Balay {
632d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
633d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data;
634acdf5bf4SSatish Balay   int        ierr, i,bs2=baij->bs2;
635d6de1c52SSatish Balay   double     sum = 0.0;
636d6de1c52SSatish Balay   Scalar     *v;
637d6de1c52SSatish Balay 
638d64ed03dSBarry Smith   PetscFunctionBegin;
639d6de1c52SSatish Balay   if (baij->size == 1) {
640d6de1c52SSatish Balay     ierr =  MatNorm(baij->A,type,norm); CHKERRQ(ierr);
641d6de1c52SSatish Balay   } else {
642d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
643d6de1c52SSatish Balay       v = amat->a;
644d6de1c52SSatish Balay       for (i=0; i<amat->nz*bs2; i++ ) {
6453a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
646*e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
647d6de1c52SSatish Balay #else
648d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
649d6de1c52SSatish Balay #endif
650d6de1c52SSatish Balay       }
651d6de1c52SSatish Balay       v = bmat->a;
652d6de1c52SSatish Balay       for (i=0; i<bmat->nz*bs2; i++ ) {
6533a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
654*e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
655d6de1c52SSatish Balay #else
656d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
657d6de1c52SSatish Balay #endif
658d6de1c52SSatish Balay       }
659ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
660d6de1c52SSatish Balay       *norm = sqrt(*norm);
661d64ed03dSBarry Smith     } else {
662e3372554SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
663d6de1c52SSatish Balay     }
664d64ed03dSBarry Smith   }
6653a40ed3dSBarry Smith   PetscFunctionReturn(0);
666d6de1c52SSatish Balay }
66757b952d6SSatish Balay 
6685615d1e5SSatish Balay #undef __FUNC__
6695615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ"
670ec1ea8d8SLois Curfman McInnes int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
67157b952d6SSatish Balay {
67257b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
67357b952d6SSatish Balay   MPI_Comm    comm = mat->comm;
67457b952d6SSatish Balay   int         size = baij->size, *owners = baij->rowners,bs=baij->bs;
67557b952d6SSatish Balay   int         rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr;
67657b952d6SSatish Balay   MPI_Request *send_waits,*recv_waits;
67757b952d6SSatish Balay   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
67857b952d6SSatish Balay   InsertMode  addv;
67957b952d6SSatish Balay   Scalar      *rvalues,*svalues;
68057b952d6SSatish Balay 
681d64ed03dSBarry Smith   PetscFunctionBegin;
682570da906SBarry Smith   if (baij->donotstash) {
683570da906SBarry Smith     baij->svalues    = 0; baij->rvalues    = 0;
684570da906SBarry Smith     baij->nsends     = 0; baij->nrecvs     = 0;
685570da906SBarry Smith     baij->send_waits = 0; baij->recv_waits = 0;
686570da906SBarry Smith     baij->rmax       = 0;
687570da906SBarry Smith     PetscFunctionReturn(0);
688570da906SBarry Smith   }
689570da906SBarry Smith 
69057b952d6SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
691ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
69257b952d6SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
693a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added");
69457b952d6SSatish Balay   }
695e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
69657b952d6SSatish Balay 
69757b952d6SSatish Balay   /*  first count number of contributors to each processor */
69857b952d6SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
69957b952d6SSatish Balay   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
70057b952d6SSatish Balay   owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
70157b952d6SSatish Balay   for ( i=0; i<baij->stash.n; i++ ) {
70257b952d6SSatish Balay     idx = baij->stash.idx[i];
70357b952d6SSatish Balay     for ( j=0; j<size; j++ ) {
70457b952d6SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
70557b952d6SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
70657b952d6SSatish Balay       }
70757b952d6SSatish Balay     }
70857b952d6SSatish Balay   }
70957b952d6SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
71057b952d6SSatish Balay 
71157b952d6SSatish Balay   /* inform other processors of number of messages and max length*/
71257b952d6SSatish Balay   work      = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
713ca161407SBarry Smith   ierr      = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
71457b952d6SSatish Balay   nreceives = work[rank];
715ca161407SBarry Smith   ierr      = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
71657b952d6SSatish Balay   nmax      = work[rank];
71757b952d6SSatish Balay   PetscFree(work);
71857b952d6SSatish Balay 
71957b952d6SSatish Balay   /* post receives:
72057b952d6SSatish Balay        1) each message will consist of ordered pairs
72157b952d6SSatish Balay      (global index,value) we store the global index as a double
72257b952d6SSatish Balay      to simplify the message passing.
72357b952d6SSatish Balay        2) since we don't know how long each individual message is we
72457b952d6SSatish Balay      allocate the largest needed buffer for each receive. Potentially
72557b952d6SSatish Balay      this is a lot of wasted space.
72657b952d6SSatish Balay 
72757b952d6SSatish Balay 
72857b952d6SSatish Balay        This could be done better.
72957b952d6SSatish Balay   */
730f8abc2e8SBarry Smith   rvalues    = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
731f8abc2e8SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
73257b952d6SSatish Balay   for ( i=0; i<nreceives; i++ ) {
733ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
73457b952d6SSatish Balay   }
73557b952d6SSatish Balay 
73657b952d6SSatish Balay   /* do sends:
73757b952d6SSatish Balay       1) starts[i] gives the starting index in svalues for stuff going to
73857b952d6SSatish Balay          the ith processor
73957b952d6SSatish Balay   */
74057b952d6SSatish Balay   svalues    = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
741d64ed03dSBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
74257b952d6SSatish Balay   starts     = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
74357b952d6SSatish Balay   starts[0] = 0;
74457b952d6SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
74557b952d6SSatish Balay   for ( i=0; i<baij->stash.n; i++ ) {
74657b952d6SSatish Balay     svalues[3*starts[owner[i]]]       = (Scalar)  baij->stash.idx[i];
74757b952d6SSatish Balay     svalues[3*starts[owner[i]]+1]     = (Scalar)  baij->stash.idy[i];
74857b952d6SSatish Balay     svalues[3*(starts[owner[i]]++)+2] =  baij->stash.array[i];
74957b952d6SSatish Balay   }
75057b952d6SSatish Balay   PetscFree(owner);
75157b952d6SSatish Balay   starts[0] = 0;
75257b952d6SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
75357b952d6SSatish Balay   count = 0;
75457b952d6SSatish Balay   for ( i=0; i<size; i++ ) {
75557b952d6SSatish Balay     if (procs[i]) {
756ca161407SBarry Smith       ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
75757b952d6SSatish Balay     }
75857b952d6SSatish Balay   }
75957b952d6SSatish Balay   PetscFree(starts); PetscFree(nprocs);
76057b952d6SSatish Balay 
76157b952d6SSatish Balay   /* Free cache space */
76210a665d1SBarry Smith   PLogInfo(baij->A,"MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",baij->stash.n);
76357b952d6SSatish Balay   ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr);
76457b952d6SSatish Balay 
76557b952d6SSatish Balay   baij->svalues    = svalues;    baij->rvalues    = rvalues;
76657b952d6SSatish Balay   baij->nsends     = nsends;     baij->nrecvs     = nreceives;
76757b952d6SSatish Balay   baij->send_waits = send_waits; baij->recv_waits = recv_waits;
76857b952d6SSatish Balay   baij->rmax       = nmax;
76957b952d6SSatish Balay 
7703a40ed3dSBarry Smith   PetscFunctionReturn(0);
77157b952d6SSatish Balay }
772bd7f49f5SSatish Balay 
773fef45726SSatish Balay /*
774fef45726SSatish Balay   Creates the hash table, and sets the table
775fef45726SSatish Balay   This table is created only once.
776fef45726SSatish Balay   If new entried need to be added to the matrix
777fef45726SSatish Balay   then the hash table has to be destroyed and
778fef45726SSatish Balay   recreated.
779fef45726SSatish Balay */
780fef45726SSatish Balay #undef __FUNC__
781fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private"
782d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor)
783596b8d2eSBarry Smith {
784596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
785596b8d2eSBarry Smith   Mat         A = baij->A, B=baij->B;
786596b8d2eSBarry Smith   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data;
7870bdbc534SSatish Balay   int         i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7884a15367fSSatish Balay   int         size,bs2=baij->bs2,rstart=baij->rstart;
789187ce0cbSSatish Balay   int         cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs;
790fef45726SSatish Balay   int         *HT,key;
7910bdbc534SSatish Balay   Scalar      **HD;
792c2760754SSatish Balay   double      tmp;
7934a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g)
7944a15367fSSatish Balay   int         ct=0,max=0;
7954a15367fSSatish Balay #endif
796fef45726SSatish Balay 
797d64ed03dSBarry Smith   PetscFunctionBegin;
7980bdbc534SSatish Balay   baij->ht_size=(int)(factor*nz);
7990bdbc534SSatish Balay   size = baij->ht_size;
800fef45726SSatish Balay 
8010bdbc534SSatish Balay   if (baij->ht) {
8020bdbc534SSatish Balay     PetscFunctionReturn(0);
803596b8d2eSBarry Smith   }
8040bdbc534SSatish Balay 
805fef45726SSatish Balay   /* Allocate Memory for Hash Table */
806b9e4cc15SSatish Balay   baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1); CHKPTRQ(baij->hd);
807b9e4cc15SSatish Balay   baij->ht = (int*)(baij->hd + size);
808b9e4cc15SSatish Balay   HD = baij->hd;
809a07cd24cSSatish Balay   HT = baij->ht;
810b9e4cc15SSatish Balay 
811b9e4cc15SSatish Balay 
812c2760754SSatish Balay   PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));
8130bdbc534SSatish Balay 
814596b8d2eSBarry Smith 
815596b8d2eSBarry Smith   /* Loop Over A */
8160bdbc534SSatish Balay   for ( i=0; i<a->mbs; i++ ) {
817596b8d2eSBarry Smith     for ( j=ai[i]; j<ai[i+1]; j++ ) {
8180bdbc534SSatish Balay       row = i+rstart;
8190bdbc534SSatish Balay       col = aj[j]+cstart;
820596b8d2eSBarry Smith 
821187ce0cbSSatish Balay       key = row*Nbs + col + 1;
822c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8230bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
8240bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
8250bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8260bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
827596b8d2eSBarry Smith           break;
828187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
829187ce0cbSSatish Balay         } else {
830187ce0cbSSatish Balay           ct++;
831187ce0cbSSatish Balay #endif
832596b8d2eSBarry Smith         }
833187ce0cbSSatish Balay       }
834187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
835187ce0cbSSatish Balay       if (k> max) max = k;
836187ce0cbSSatish Balay #endif
837596b8d2eSBarry Smith     }
838596b8d2eSBarry Smith   }
839596b8d2eSBarry Smith   /* Loop Over B */
8400bdbc534SSatish Balay   for ( i=0; i<b->mbs; i++ ) {
841596b8d2eSBarry Smith     for ( j=bi[i]; j<bi[i+1]; j++ ) {
8420bdbc534SSatish Balay       row = i+rstart;
8430bdbc534SSatish Balay       col = garray[bj[j]];
844187ce0cbSSatish Balay       key = row*Nbs + col + 1;
845c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8460bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
8470bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
8480bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8490bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
850596b8d2eSBarry Smith           break;
851187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
852187ce0cbSSatish Balay         } else {
853187ce0cbSSatish Balay           ct++;
854187ce0cbSSatish Balay #endif
855596b8d2eSBarry Smith         }
856187ce0cbSSatish Balay       }
857187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
858187ce0cbSSatish Balay       if (k> max) max = k;
859187ce0cbSSatish Balay #endif
860596b8d2eSBarry Smith     }
861596b8d2eSBarry Smith   }
862596b8d2eSBarry Smith 
863596b8d2eSBarry Smith   /* Print Summary */
864187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
865c2760754SSatish Balay   for ( i=0,j=0; i<size; i++)
866596b8d2eSBarry Smith     if (HT[i]) {j++;}
867187ce0cbSSatish Balay   PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",
868187ce0cbSSatish Balay            (j== 0)? 0.0:((double)(ct+j))/j,max);
869187ce0cbSSatish Balay #endif
8703a40ed3dSBarry Smith   PetscFunctionReturn(0);
871596b8d2eSBarry Smith }
87257b952d6SSatish Balay 
8735615d1e5SSatish Balay #undef __FUNC__
8745615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ"
875ec1ea8d8SLois Curfman McInnes int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
87657b952d6SSatish Balay {
87757b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
87857b952d6SSatish Balay   MPI_Status  *send_status,recv_status;
87957b952d6SSatish Balay   int         imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr;
880b7029e64SSatish Balay   int         bs=baij->bs,row,col,other_disassembled;
88157b952d6SSatish Balay   Scalar      *values,val;
882e0fa3b82SLois Curfman McInnes   InsertMode  addv = mat->insertmode;
88357b952d6SSatish Balay 
884d64ed03dSBarry Smith   PetscFunctionBegin;
88557b952d6SSatish Balay   /*  wait on receives */
88657b952d6SSatish Balay   while (count) {
887ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
88857b952d6SSatish Balay     /* unpack receives into our local space */
88957b952d6SSatish Balay     values = baij->rvalues + 3*imdex*baij->rmax;
890ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr);
89157b952d6SSatish Balay     n = n/3;
89257b952d6SSatish Balay     for ( i=0; i<n; i++ ) {
89357b952d6SSatish Balay       row = (int) PetscReal(values[3*i]) - baij->rstart*bs;
89457b952d6SSatish Balay       col = (int) PetscReal(values[3*i+1]);
89557b952d6SSatish Balay       val = values[3*i+2];
89657b952d6SSatish Balay       if (col >= baij->cstart*bs && col < baij->cend*bs) {
89757b952d6SSatish Balay         col -= baij->cstart*bs;
8986fd7127cSSatish Balay         ierr = MatSetValues(baij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr)
899d64ed03dSBarry Smith       } else {
90057b952d6SSatish Balay         if (mat->was_assembled) {
901905e6a2fSBarry Smith           if (!baij->colmap) {
902905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr);
903905e6a2fSBarry Smith           }
904a5eb4965SSatish Balay           col = (baij->colmap[col/bs]) - 1 + col%bs;
90557b952d6SSatish Balay           if (col < 0  && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
90657b952d6SSatish Balay             ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
90757b952d6SSatish Balay             col = (int) PetscReal(values[3*i+1]);
90857b952d6SSatish Balay           }
90957b952d6SSatish Balay         }
9106fd7127cSSatish Balay         ierr = MatSetValues(baij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr)
91157b952d6SSatish Balay       }
91257b952d6SSatish Balay     }
91357b952d6SSatish Balay     count--;
91457b952d6SSatish Balay   }
915570da906SBarry Smith   if (baij->recv_waits) PetscFree(baij->recv_waits);
916570da906SBarry Smith   if (baij->rvalues)    PetscFree(baij->rvalues);
91757b952d6SSatish Balay 
91857b952d6SSatish Balay   /* wait on sends */
91957b952d6SSatish Balay   if (baij->nsends) {
920d64ed03dSBarry Smith     send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
921ca161407SBarry Smith     ierr        = MPI_Waitall(baij->nsends,baij->send_waits,send_status);CHKERRQ(ierr);
92257b952d6SSatish Balay     PetscFree(send_status);
92357b952d6SSatish Balay   }
924570da906SBarry Smith   if (baij->send_waits) PetscFree(baij->send_waits);
925570da906SBarry Smith   if (baij->svalues)    PetscFree(baij->svalues);
92657b952d6SSatish Balay 
92757b952d6SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr);
92857b952d6SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr);
92957b952d6SSatish Balay 
93057b952d6SSatish Balay   /* determine if any processor has disassembled, if so we must
93157b952d6SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
9326e713f22SBarry Smith   /*
9336e713f22SBarry Smith      if nonzero structure of submatrix B cannot change then we know that
9346e713f22SBarry Smith      no processor disassembled thus we can skip this stuff
9356e713f22SBarry Smith   */
9366e713f22SBarry Smith   if (!((Mat_SeqBAIJ*) baij->B->data)->nonew)  {
937ca161407SBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
93857b952d6SSatish Balay     if (mat->was_assembled && !other_disassembled) {
93957b952d6SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
94057b952d6SSatish Balay     }
9416e713f22SBarry Smith   }
94257b952d6SSatish Balay 
9436d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
94457b952d6SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr);
94557b952d6SSatish Balay   }
94657b952d6SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr);
94757b952d6SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr);
94857b952d6SSatish Balay 
949187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
950187ce0cbSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
951187ce0cbSSatish Balay     PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",
952187ce0cbSSatish Balay              ((double)baij->ht_total_ct)/baij->ht_insert_ct);
953187ce0cbSSatish Balay     baij->ht_total_ct  = 0;
954187ce0cbSSatish Balay     baij->ht_insert_ct = 0;
955187ce0cbSSatish Balay   }
956187ce0cbSSatish Balay #endif
957133cdb44SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
958133cdb44SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact); CHKERRQ(ierr);
959f830108cSBarry Smith     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
960f830108cSBarry Smith     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
961bd7f49f5SSatish Balay   }
962187ce0cbSSatish Balay 
96357b952d6SSatish Balay   if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;}
9643a40ed3dSBarry Smith   PetscFunctionReturn(0);
96557b952d6SSatish Balay }
96657b952d6SSatish Balay 
9675615d1e5SSatish Balay #undef __FUNC__
9685615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary"
96957b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer)
97057b952d6SSatish Balay {
97157b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
97257b952d6SSatish Balay   int          ierr;
97357b952d6SSatish Balay 
974d64ed03dSBarry Smith   PetscFunctionBegin;
97557b952d6SSatish Balay   if (baij->size == 1) {
97657b952d6SSatish Balay     ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
977a8c6a408SBarry Smith   } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
9783a40ed3dSBarry Smith   PetscFunctionReturn(0);
97957b952d6SSatish Balay }
98057b952d6SSatish Balay 
9815615d1e5SSatish Balay #undef __FUNC__
9825615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab"
98357b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer)
98457b952d6SSatish Balay {
98557b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
986cee3aa6bSSatish Balay   int          ierr, format,rank,bs = baij->bs;
98757b952d6SSatish Balay   FILE         *fd;
98857b952d6SSatish Balay   ViewerType   vtype;
98957b952d6SSatish Balay 
990d64ed03dSBarry Smith   PetscFunctionBegin;
99157b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
99257b952d6SSatish Balay   if (vtype  == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) {
99357b952d6SSatish Balay     ierr = ViewerGetFormat(viewer,&format);
994639f9d9dSBarry Smith     if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
9954e220ebcSLois Curfman McInnes       MatInfo info;
99657b952d6SSatish Balay       MPI_Comm_rank(mat->comm,&rank);
99757b952d6SSatish Balay       ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
9984e220ebcSLois Curfman McInnes       ierr = MatGetInfo(mat,MAT_LOCAL,&info);
99957b952d6SSatish Balay       PetscSequentialPhaseBegin(mat->comm,1);
100057b952d6SSatish Balay       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
10014e220ebcSLois Curfman McInnes               rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
10024e220ebcSLois Curfman McInnes               baij->bs,(int)info.memory);
10034e220ebcSLois Curfman McInnes       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);
10044e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
10054e220ebcSLois Curfman McInnes       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);
10064e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
100757b952d6SSatish Balay       fflush(fd);
100857b952d6SSatish Balay       PetscSequentialPhaseEnd(mat->comm,1);
100957b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr);
10103a40ed3dSBarry Smith       PetscFunctionReturn(0);
1011d64ed03dSBarry Smith     } else if (format == VIEWER_FORMAT_ASCII_INFO) {
1012bcc3fcf6SBarry Smith       PetscPrintf(mat->comm,"  block size is %d\n",bs);
10133a40ed3dSBarry Smith       PetscFunctionReturn(0);
101457b952d6SSatish Balay     }
101557b952d6SSatish Balay   }
101657b952d6SSatish Balay 
101757b952d6SSatish Balay   if (vtype == DRAW_VIEWER) {
101857b952d6SSatish Balay     Draw       draw;
101957b952d6SSatish Balay     PetscTruth isnull;
102057b952d6SSatish Balay     ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr);
10213a40ed3dSBarry Smith     ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
102257b952d6SSatish Balay   }
102357b952d6SSatish Balay 
102457b952d6SSatish Balay   if (vtype == ASCII_FILE_VIEWER) {
102557b952d6SSatish Balay     ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
102657b952d6SSatish Balay     PetscSequentialPhaseBegin(mat->comm,1);
102757b952d6SSatish Balay     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
102857b952d6SSatish Balay            baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n,
102957b952d6SSatish Balay             baij->cstart*bs,baij->cend*bs);
103057b952d6SSatish Balay     ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
103157b952d6SSatish Balay     ierr = MatView(baij->B,viewer); CHKERRQ(ierr);
103257b952d6SSatish Balay     fflush(fd);
103357b952d6SSatish Balay     PetscSequentialPhaseEnd(mat->comm,1);
1034d64ed03dSBarry Smith   } else {
103557b952d6SSatish Balay     int size = baij->size;
103657b952d6SSatish Balay     rank = baij->rank;
103757b952d6SSatish Balay     if (size == 1) {
103857b952d6SSatish Balay       ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
1039d64ed03dSBarry Smith     } else {
104057b952d6SSatish Balay       /* assemble the entire matrix onto first processor. */
104157b952d6SSatish Balay       Mat         A;
104257b952d6SSatish Balay       Mat_SeqBAIJ *Aloc;
104340011551SBarry Smith       int         M = baij->M, N = baij->N,*ai,*aj,col,i,j,k,*rvals;
104457b952d6SSatish Balay       int         mbs=baij->mbs;
104557b952d6SSatish Balay       Scalar      *a;
104657b952d6SSatish Balay 
104757b952d6SSatish Balay       if (!rank) {
104855843e3eSBarry Smith         ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
1049d64ed03dSBarry Smith       } else {
105055843e3eSBarry Smith         ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
105157b952d6SSatish Balay       }
105257b952d6SSatish Balay       PLogObjectParent(mat,A);
105357b952d6SSatish Balay 
105457b952d6SSatish Balay       /* copy over the A part */
105557b952d6SSatish Balay       Aloc = (Mat_SeqBAIJ*) baij->A->data;
105657b952d6SSatish Balay       ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
105757b952d6SSatish Balay       rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals);
105857b952d6SSatish Balay 
105957b952d6SSatish Balay       for ( i=0; i<mbs; i++ ) {
106057b952d6SSatish Balay         rvals[0] = bs*(baij->rstart + i);
106157b952d6SSatish Balay         for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
106257b952d6SSatish Balay         for ( j=ai[i]; j<ai[i+1]; j++ ) {
106357b952d6SSatish Balay           col = (baij->cstart+aj[j])*bs;
106457b952d6SSatish Balay           for (k=0; k<bs; k++ ) {
1065cee3aa6bSSatish Balay             ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1066cee3aa6bSSatish Balay             col++; a += bs;
106757b952d6SSatish Balay           }
106857b952d6SSatish Balay         }
106957b952d6SSatish Balay       }
107057b952d6SSatish Balay       /* copy over the B part */
107157b952d6SSatish Balay       Aloc = (Mat_SeqBAIJ*) baij->B->data;
107257b952d6SSatish Balay       ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
107357b952d6SSatish Balay       for ( i=0; i<mbs; i++ ) {
107457b952d6SSatish Balay         rvals[0] = bs*(baij->rstart + i);
107557b952d6SSatish Balay         for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
107657b952d6SSatish Balay         for ( j=ai[i]; j<ai[i+1]; j++ ) {
107757b952d6SSatish Balay           col = baij->garray[aj[j]]*bs;
107857b952d6SSatish Balay           for (k=0; k<bs; k++ ) {
1079cee3aa6bSSatish Balay             ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1080cee3aa6bSSatish Balay             col++; a += bs;
108157b952d6SSatish Balay           }
108257b952d6SSatish Balay         }
108357b952d6SSatish Balay       }
108457b952d6SSatish Balay       PetscFree(rvals);
10856d4a8577SBarry Smith       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
10866d4a8577SBarry Smith       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
108755843e3eSBarry Smith       /*
108855843e3eSBarry Smith          Everyone has to call to draw the matrix since the graphics waits are
108955843e3eSBarry Smith          synchronized across all processors that share the Draw object
109055843e3eSBarry Smith       */
109155843e3eSBarry Smith       if (!rank || vtype == DRAW_VIEWER) {
109257b952d6SSatish Balay         ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
109357b952d6SSatish Balay       }
109457b952d6SSatish Balay       ierr = MatDestroy(A); CHKERRQ(ierr);
109557b952d6SSatish Balay     }
109657b952d6SSatish Balay   }
10973a40ed3dSBarry Smith   PetscFunctionReturn(0);
109857b952d6SSatish Balay }
109957b952d6SSatish Balay 
110057b952d6SSatish Balay 
110157b952d6SSatish Balay 
11025615d1e5SSatish Balay #undef __FUNC__
11035615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ"
1104e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer)
110557b952d6SSatish Balay {
110657b952d6SSatish Balay   int         ierr;
110757b952d6SSatish Balay   ViewerType  vtype;
110857b952d6SSatish Balay 
1109d64ed03dSBarry Smith   PetscFunctionBegin;
111057b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
111157b952d6SSatish Balay   if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER ||
111257b952d6SSatish Balay       vtype == DRAW_VIEWER       || vtype == MATLAB_VIEWER) {
111357b952d6SSatish Balay     ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
11143a40ed3dSBarry Smith   } else if (vtype == BINARY_FILE_VIEWER) {
11153a40ed3dSBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
11165cd90555SBarry Smith   } else {
11175cd90555SBarry Smith     SETERRQ(1,1,"Viewer type not supported by PETSc object");
111857b952d6SSatish Balay   }
11193a40ed3dSBarry Smith   PetscFunctionReturn(0);
112057b952d6SSatish Balay }
112157b952d6SSatish Balay 
11225615d1e5SSatish Balay #undef __FUNC__
11235615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ"
1124e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat)
112579bdfe76SSatish Balay {
112679bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
112779bdfe76SSatish Balay   int         ierr;
112879bdfe76SSatish Balay 
1129d64ed03dSBarry Smith   PetscFunctionBegin;
113098dd23e9SBarry Smith   if (--mat->refct > 0) PetscFunctionReturn(0);
113198dd23e9SBarry Smith 
113298dd23e9SBarry Smith   if (mat->mapping) {
113398dd23e9SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr);
113498dd23e9SBarry Smith   }
113598dd23e9SBarry Smith   if (mat->bmapping) {
113698dd23e9SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->bmapping); CHKERRQ(ierr);
113798dd23e9SBarry Smith   }
11383a40ed3dSBarry Smith #if defined(USE_PETSC_LOG)
1139e1311b90SBarry Smith   PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",baij->M,baij->N);
114079bdfe76SSatish Balay #endif
114179bdfe76SSatish Balay 
114283e2fdc7SBarry Smith   ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr);
114379bdfe76SSatish Balay   PetscFree(baij->rowners);
114479bdfe76SSatish Balay   ierr = MatDestroy(baij->A); CHKERRQ(ierr);
114579bdfe76SSatish Balay   ierr = MatDestroy(baij->B); CHKERRQ(ierr);
114679bdfe76SSatish Balay   if (baij->colmap) PetscFree(baij->colmap);
114779bdfe76SSatish Balay   if (baij->garray) PetscFree(baij->garray);
114879bdfe76SSatish Balay   if (baij->lvec)   VecDestroy(baij->lvec);
114979bdfe76SSatish Balay   if (baij->Mvctx)  VecScatterDestroy(baij->Mvctx);
115079bdfe76SSatish Balay   if (baij->rowvalues) PetscFree(baij->rowvalues);
115130793edcSSatish Balay   if (baij->barray) PetscFree(baij->barray);
1152b9e4cc15SSatish Balay   if (baij->hd) PetscFree(baij->hd);
115379bdfe76SSatish Balay   PetscFree(baij);
115479bdfe76SSatish Balay   PLogObjectDestroy(mat);
115579bdfe76SSatish Balay   PetscHeaderDestroy(mat);
11563a40ed3dSBarry Smith   PetscFunctionReturn(0);
115779bdfe76SSatish Balay }
115879bdfe76SSatish Balay 
11595615d1e5SSatish Balay #undef __FUNC__
11605615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ"
1161ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1162cee3aa6bSSatish Balay {
1163cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
116447b4a8eaSLois Curfman McInnes   int         ierr, nt;
1165cee3aa6bSSatish Balay 
1166d64ed03dSBarry Smith   PetscFunctionBegin;
1167e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
116847b4a8eaSLois Curfman McInnes   if (nt != a->n) {
1169a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx");
117047b4a8eaSLois Curfman McInnes   }
1171e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
117247b4a8eaSLois Curfman McInnes   if (nt != a->m) {
1173a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy");
117447b4a8eaSLois Curfman McInnes   }
117543a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1176f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy); CHKERRQ(ierr);
117743a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1178f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
117943a90d84SBarry Smith   ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
11803a40ed3dSBarry Smith   PetscFunctionReturn(0);
1181cee3aa6bSSatish Balay }
1182cee3aa6bSSatish Balay 
11835615d1e5SSatish Balay #undef __FUNC__
11845615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ"
1185ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1186cee3aa6bSSatish Balay {
1187cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1188cee3aa6bSSatish Balay   int        ierr;
1189d64ed03dSBarry Smith 
1190d64ed03dSBarry Smith   PetscFunctionBegin;
119143a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1192f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
119343a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1194f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
11953a40ed3dSBarry Smith   PetscFunctionReturn(0);
1196cee3aa6bSSatish Balay }
1197cee3aa6bSSatish Balay 
11985615d1e5SSatish Balay #undef __FUNC__
11995615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ"
1200ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy)
1201cee3aa6bSSatish Balay {
1202cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1203cee3aa6bSSatish Balay   int         ierr;
1204cee3aa6bSSatish Balay 
1205d64ed03dSBarry Smith   PetscFunctionBegin;
1206cee3aa6bSSatish Balay   /* do nondiagonal part */
1207f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
1208cee3aa6bSSatish Balay   /* send it on its way */
1209537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1210cee3aa6bSSatish Balay   /* do local part */
1211f830108cSBarry Smith   ierr = (*a->A->ops->multtrans)(a->A,xx,yy); CHKERRQ(ierr);
1212cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1213cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1214cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1215639f9d9dSBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
12163a40ed3dSBarry Smith   PetscFunctionReturn(0);
1217cee3aa6bSSatish Balay }
1218cee3aa6bSSatish Balay 
12195615d1e5SSatish Balay #undef __FUNC__
12205615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ"
1221ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1222cee3aa6bSSatish Balay {
1223cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1224cee3aa6bSSatish Balay   int         ierr;
1225cee3aa6bSSatish Balay 
1226d64ed03dSBarry Smith   PetscFunctionBegin;
1227cee3aa6bSSatish Balay   /* do nondiagonal part */
1228f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
1229cee3aa6bSSatish Balay   /* send it on its way */
1230537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
1231cee3aa6bSSatish Balay   /* do local part */
1232f830108cSBarry Smith   ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
1233cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1234cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1235cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1236537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
12373a40ed3dSBarry Smith   PetscFunctionReturn(0);
1238cee3aa6bSSatish Balay }
1239cee3aa6bSSatish Balay 
1240cee3aa6bSSatish Balay /*
1241cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1242cee3aa6bSSatish Balay    diagonal block
1243cee3aa6bSSatish Balay */
12445615d1e5SSatish Balay #undef __FUNC__
12455615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ"
1246ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1247cee3aa6bSSatish Balay {
1248cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
12493a40ed3dSBarry Smith   int         ierr;
1250d64ed03dSBarry Smith 
1251d64ed03dSBarry Smith   PetscFunctionBegin;
1252a8c6a408SBarry Smith   if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block");
12533a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12543a40ed3dSBarry Smith   PetscFunctionReturn(0);
1255cee3aa6bSSatish Balay }
1256cee3aa6bSSatish Balay 
12575615d1e5SSatish Balay #undef __FUNC__
12585615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ"
1259ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A)
1260cee3aa6bSSatish Balay {
1261cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1262cee3aa6bSSatish Balay   int         ierr;
1263d64ed03dSBarry Smith 
1264d64ed03dSBarry Smith   PetscFunctionBegin;
1265cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A); CHKERRQ(ierr);
1266cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B); CHKERRQ(ierr);
12673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1268cee3aa6bSSatish Balay }
1269026e39d0SSatish Balay 
12705615d1e5SSatish Balay #undef __FUNC__
12715615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ"
1272ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n)
127357b952d6SSatish Balay {
127457b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1275d64ed03dSBarry Smith 
1276d64ed03dSBarry Smith   PetscFunctionBegin;
1277bd7f49f5SSatish Balay   if (m) *m = mat->M;
1278bd7f49f5SSatish Balay   if (n) *n = mat->N;
12793a40ed3dSBarry Smith   PetscFunctionReturn(0);
128057b952d6SSatish Balay }
128157b952d6SSatish Balay 
12825615d1e5SSatish Balay #undef __FUNC__
12835615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ"
1284ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n)
128557b952d6SSatish Balay {
128657b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1287d64ed03dSBarry Smith 
1288d64ed03dSBarry Smith   PetscFunctionBegin;
1289f830108cSBarry Smith   *m = mat->m; *n = mat->n;
12903a40ed3dSBarry Smith   PetscFunctionReturn(0);
129157b952d6SSatish Balay }
129257b952d6SSatish Balay 
12935615d1e5SSatish Balay #undef __FUNC__
12945615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ"
1295ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n)
129657b952d6SSatish Balay {
129757b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1298d64ed03dSBarry Smith 
1299d64ed03dSBarry Smith   PetscFunctionBegin;
130057b952d6SSatish Balay   *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs;
13013a40ed3dSBarry Smith   PetscFunctionReturn(0);
130257b952d6SSatish Balay }
130357b952d6SSatish Balay 
1304acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
1305acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
1306acdf5bf4SSatish Balay 
13075615d1e5SSatish Balay #undef __FUNC__
13085615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ"
1309acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
1310acdf5bf4SSatish Balay {
1311acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1312acdf5bf4SSatish Balay   Scalar     *vworkA, *vworkB, **pvA, **pvB,*v_p;
1313acdf5bf4SSatish Balay   int        bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB;
1314d9d09a02SSatish Balay   int        nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs;
1315d9d09a02SSatish Balay   int        *cmap, *idx_p,cstart = mat->cstart;
1316acdf5bf4SSatish Balay 
1317d64ed03dSBarry Smith   PetscFunctionBegin;
1318a8c6a408SBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active");
1319acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1320acdf5bf4SSatish Balay 
1321acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1322acdf5bf4SSatish Balay     /*
1323acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1324acdf5bf4SSatish Balay     */
1325acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data;
1326bd16c2feSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1327bd16c2feSSatish Balay     for ( i=0; i<mbs; i++ ) {
1328acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1329acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1330acdf5bf4SSatish Balay     }
1331acdf5bf4SSatish Balay     mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));
1332acdf5bf4SSatish Balay     CHKPTRQ(mat->rowvalues);
1333acdf5bf4SSatish Balay     mat->rowindices = (int *) (mat->rowvalues + max*bs2);
1334acdf5bf4SSatish Balay   }
1335acdf5bf4SSatish Balay 
1336a8c6a408SBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows")
1337d9d09a02SSatish Balay   lrow = row - brstart;
1338acdf5bf4SSatish Balay 
1339acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1340acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1341acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1342f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
1343f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1344acdf5bf4SSatish Balay   nztot = nzA + nzB;
1345acdf5bf4SSatish Balay 
1346acdf5bf4SSatish Balay   cmap  = mat->garray;
1347acdf5bf4SSatish Balay   if (v  || idx) {
1348acdf5bf4SSatish Balay     if (nztot) {
1349acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1350acdf5bf4SSatish Balay       int imark = -1;
1351acdf5bf4SSatish Balay       if (v) {
1352acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1353acdf5bf4SSatish Balay         for ( i=0; i<nzB; i++ ) {
1354d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1355acdf5bf4SSatish Balay           else break;
1356acdf5bf4SSatish Balay         }
1357acdf5bf4SSatish Balay         imark = i;
1358acdf5bf4SSatish Balay         for ( i=0; i<nzA; i++ )     v_p[imark+i] = vworkA[i];
1359acdf5bf4SSatish Balay         for ( i=imark; i<nzB; i++ ) v_p[nzA+i]   = vworkB[i];
1360acdf5bf4SSatish Balay       }
1361acdf5bf4SSatish Balay       if (idx) {
1362acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1363acdf5bf4SSatish Balay         if (imark > -1) {
1364acdf5bf4SSatish Balay           for ( i=0; i<imark; i++ ) {
1365bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1366acdf5bf4SSatish Balay           }
1367acdf5bf4SSatish Balay         } else {
1368acdf5bf4SSatish Balay           for ( i=0; i<nzB; i++ ) {
1369d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1370d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1371acdf5bf4SSatish Balay             else break;
1372acdf5bf4SSatish Balay           }
1373acdf5bf4SSatish Balay           imark = i;
1374acdf5bf4SSatish Balay         }
1375d9d09a02SSatish Balay         for ( i=0; i<nzA; i++ )     idx_p[imark+i] = cstart*bs + cworkA[i];
1376d9d09a02SSatish Balay         for ( i=imark; i<nzB; i++ ) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1377acdf5bf4SSatish Balay       }
1378d64ed03dSBarry Smith     } else {
1379d212a18eSSatish Balay       if (idx) *idx = 0;
1380d212a18eSSatish Balay       if (v)   *v   = 0;
1381d212a18eSSatish Balay     }
1382acdf5bf4SSatish Balay   }
1383acdf5bf4SSatish Balay   *nz = nztot;
1384f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
1385f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
13863a40ed3dSBarry Smith   PetscFunctionReturn(0);
1387acdf5bf4SSatish Balay }
1388acdf5bf4SSatish Balay 
13895615d1e5SSatish Balay #undef __FUNC__
13905615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ"
1391acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
1392acdf5bf4SSatish Balay {
1393acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1394d64ed03dSBarry Smith 
1395d64ed03dSBarry Smith   PetscFunctionBegin;
1396acdf5bf4SSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
1397a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called");
1398acdf5bf4SSatish Balay   }
1399acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14003a40ed3dSBarry Smith   PetscFunctionReturn(0);
1401acdf5bf4SSatish Balay }
1402acdf5bf4SSatish Balay 
14035615d1e5SSatish Balay #undef __FUNC__
14045615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ"
1405ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs)
14065a838052SSatish Balay {
14075a838052SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1408d64ed03dSBarry Smith 
1409d64ed03dSBarry Smith   PetscFunctionBegin;
14105a838052SSatish Balay   *bs = baij->bs;
14113a40ed3dSBarry Smith   PetscFunctionReturn(0);
14125a838052SSatish Balay }
14135a838052SSatish Balay 
14145615d1e5SSatish Balay #undef __FUNC__
14155615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ"
1416ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A)
141758667388SSatish Balay {
141858667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data;
141958667388SSatish Balay   int         ierr;
1420d64ed03dSBarry Smith 
1421d64ed03dSBarry Smith   PetscFunctionBegin;
142258667388SSatish Balay   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
142358667388SSatish Balay   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
14243a40ed3dSBarry Smith   PetscFunctionReturn(0);
142558667388SSatish Balay }
14260ac07820SSatish Balay 
14275615d1e5SSatish Balay #undef __FUNC__
14285615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ"
1429ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14300ac07820SSatish Balay {
14314e220ebcSLois Curfman McInnes   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data;
14324e220ebcSLois Curfman McInnes   Mat         A = a->A, B = a->B;
14337d57db60SLois Curfman McInnes   int         ierr;
14347d57db60SLois Curfman McInnes   double      isend[5], irecv[5];
14350ac07820SSatish Balay 
1436d64ed03dSBarry Smith   PetscFunctionBegin;
14374e220ebcSLois Curfman McInnes   info->block_size     = (double)a->bs;
14384e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr);
14394e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory;
14404e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr);
14414e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory;
14420ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14434e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14444e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14454e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14464e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14474e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14480ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1449f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr);
14504e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14514e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14524e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14534e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14544e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14550ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1456f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr);
14574e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14584e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14594e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14604e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14614e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14620ac07820SSatish Balay   }
14635a5d4f66SBarry Smith   info->rows_global       = (double)a->M;
14645a5d4f66SBarry Smith   info->columns_global    = (double)a->N;
14655a5d4f66SBarry Smith   info->rows_local        = (double)a->m;
14665a5d4f66SBarry Smith   info->columns_local     = (double)a->N;
14674e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14684e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14694e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14703a40ed3dSBarry Smith   PetscFunctionReturn(0);
14710ac07820SSatish Balay }
14720ac07820SSatish Balay 
14735615d1e5SSatish Balay #undef __FUNC__
14745615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ"
1475ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op)
147658667388SSatish Balay {
147758667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
147858667388SSatish Balay 
1479d64ed03dSBarry Smith   PetscFunctionBegin;
148058667388SSatish Balay   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
148158667388SSatish Balay       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
14826da5968aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED ||
1483c2653b3dSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
148496854ed6SLois Curfman McInnes       op == MAT_NEW_NONZERO_ALLOCATION_ERROR ||
1485c2653b3dSLois Curfman McInnes       op == MAT_NEW_NONZERO_LOCATION_ERROR) {
1486b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
1487b1fbbac0SLois Curfman McInnes         MatSetOption(a->B,op);
1488b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
1489aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
149058667388SSatish Balay         MatSetOption(a->A,op);
149158667388SSatish Balay         MatSetOption(a->B,op);
1492b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
14936da5968aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
149458667388SSatish Balay              op == MAT_SYMMETRIC ||
149558667388SSatish Balay              op == MAT_STRUCTURALLY_SYMMETRIC ||
1496b51ba29fSSatish Balay              op == MAT_YES_NEW_DIAGONALS ||
1497b51ba29fSSatish Balay              op == MAT_USE_HASH_TABLE)
149858667388SSatish Balay     PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
149958667388SSatish Balay   else if (op == MAT_COLUMN_ORIENTED) {
150058667388SSatish Balay     a->roworiented = 0;
150158667388SSatish Balay     MatSetOption(a->A,op);
150258667388SSatish Balay     MatSetOption(a->B,op);
15032b362799SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
150490f02eecSBarry Smith     a->donotstash = 1;
1505d64ed03dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
1506d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
1507133cdb44SSatish Balay   } else if (op == MAT_USE_HASH_TABLE) {
1508133cdb44SSatish Balay     a->ht_flag = 1;
1509d64ed03dSBarry Smith   } else {
1510d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
1511d64ed03dSBarry Smith   }
15123a40ed3dSBarry Smith   PetscFunctionReturn(0);
151358667388SSatish Balay }
151458667388SSatish Balay 
15155615d1e5SSatish Balay #undef __FUNC__
15165615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ("
1517ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout)
15180ac07820SSatish Balay {
15190ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data;
15200ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15210ac07820SSatish Balay   Mat        B;
152240011551SBarry Smith   int        ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col;
15230ac07820SSatish Balay   int        bs=baij->bs,mbs=baij->mbs;
15240ac07820SSatish Balay   Scalar     *a;
15250ac07820SSatish Balay 
1526d64ed03dSBarry Smith   PetscFunctionBegin;
1527a8c6a408SBarry Smith   if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place");
15280ac07820SSatish Balay   ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);
15290ac07820SSatish Balay   CHKERRQ(ierr);
15300ac07820SSatish Balay 
15310ac07820SSatish Balay   /* copy over the A part */
15320ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->A->data;
15330ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15340ac07820SSatish Balay   rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals);
15350ac07820SSatish Balay 
15360ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
15370ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15380ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
15390ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
15400ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
15410ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15420ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15430ac07820SSatish Balay         col++; a += bs;
15440ac07820SSatish Balay       }
15450ac07820SSatish Balay     }
15460ac07820SSatish Balay   }
15470ac07820SSatish Balay   /* copy over the B part */
15480ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->B->data;
15490ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15500ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
15510ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15520ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
15530ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
15540ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15550ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15560ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15570ac07820SSatish Balay         col++; a += bs;
15580ac07820SSatish Balay       }
15590ac07820SSatish Balay     }
15600ac07820SSatish Balay   }
15610ac07820SSatish Balay   PetscFree(rvals);
15620ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
15630ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
15640ac07820SSatish Balay 
15650ac07820SSatish Balay   if (matout != PETSC_NULL) {
15660ac07820SSatish Balay     *matout = B;
15670ac07820SSatish Balay   } else {
1568f830108cSBarry Smith     PetscOps       *Abops;
1569f830108cSBarry Smith     struct _MatOps *Aops;
1570f830108cSBarry Smith 
15710ac07820SSatish Balay     /* This isn't really an in-place transpose .... but free data structures from baij */
15720ac07820SSatish Balay     PetscFree(baij->rowners);
15730ac07820SSatish Balay     ierr = MatDestroy(baij->A); CHKERRQ(ierr);
15740ac07820SSatish Balay     ierr = MatDestroy(baij->B); CHKERRQ(ierr);
15750ac07820SSatish Balay     if (baij->colmap) PetscFree(baij->colmap);
15760ac07820SSatish Balay     if (baij->garray) PetscFree(baij->garray);
15770ac07820SSatish Balay     if (baij->lvec) VecDestroy(baij->lvec);
15780ac07820SSatish Balay     if (baij->Mvctx) VecScatterDestroy(baij->Mvctx);
15790ac07820SSatish Balay     PetscFree(baij);
1580f830108cSBarry Smith 
1581f830108cSBarry Smith     /*
1582f830108cSBarry Smith        This is horrible, horrible code. We need to keep the
1583f830108cSBarry Smith       A pointers for the bops and ops but copy everything
1584f830108cSBarry Smith       else from C.
1585f830108cSBarry Smith     */
1586f830108cSBarry Smith     Abops = A->bops;
1587f830108cSBarry Smith     Aops  = A->ops;
1588f09e8eb9SSatish Balay     PetscMemcpy(A,B,sizeof(struct _p_Mat));
1589f830108cSBarry Smith     A->bops = Abops;
1590f830108cSBarry Smith     A->ops  = Aops;
1591f830108cSBarry Smith 
15920ac07820SSatish Balay     PetscHeaderDestroy(B);
15930ac07820SSatish Balay   }
15943a40ed3dSBarry Smith   PetscFunctionReturn(0);
15950ac07820SSatish Balay }
15960e95ebc0SSatish Balay 
15975615d1e5SSatish Balay #undef __FUNC__
15985615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ"
15990e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr)
16000e95ebc0SSatish Balay {
16010e95ebc0SSatish Balay   Mat a = ((Mat_MPIBAIJ *) A->data)->A;
16020e95ebc0SSatish Balay   Mat b = ((Mat_MPIBAIJ *) A->data)->B;
16030e95ebc0SSatish Balay   int ierr,s1,s2,s3;
16040e95ebc0SSatish Balay 
1605d64ed03dSBarry Smith   PetscFunctionBegin;
16060e95ebc0SSatish Balay   if (ll)  {
16070e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr);
16080e95ebc0SSatish Balay     ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr);
1609a8c6a408SBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"non-conforming local sizes");
16100e95ebc0SSatish Balay     ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr);
16110e95ebc0SSatish Balay     ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr);
16120e95ebc0SSatish Balay   }
1613a8c6a408SBarry Smith   if (rr) SETERRQ(PETSC_ERR_SUP,0,"not supported for right vector");
16143a40ed3dSBarry Smith   PetscFunctionReturn(0);
16150e95ebc0SSatish Balay }
16160e95ebc0SSatish Balay 
16175615d1e5SSatish Balay #undef __FUNC__
16185615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ"
1619ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag)
16200ac07820SSatish Balay {
16210ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ *) A->data;
16220ac07820SSatish Balay   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
1623a07cd24cSSatish Balay   int            *procs,*nprocs,j,found,idx,nsends,*work,row;
16240ac07820SSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
16250ac07820SSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1626a07cd24cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
16270ac07820SSatish Balay   MPI_Comm       comm = A->comm;
16280ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
16290ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
16300ac07820SSatish Balay   IS             istmp;
163172dacd9aSBarry Smith   PetscTruth     localdiag;
16320ac07820SSatish Balay 
1633d64ed03dSBarry Smith   PetscFunctionBegin;
16340ac07820SSatish Balay   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
16350ac07820SSatish Balay   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
16360ac07820SSatish Balay 
16370ac07820SSatish Balay   /*  first count number of contributors to each processor */
16380ac07820SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
16390ac07820SSatish Balay   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
16400ac07820SSatish Balay   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
16410ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16420ac07820SSatish Balay     idx = rows[i];
16430ac07820SSatish Balay     found = 0;
16440ac07820SSatish Balay     for ( j=0; j<size; j++ ) {
16450ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
16460ac07820SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
16470ac07820SSatish Balay       }
16480ac07820SSatish Balay     }
1649a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
16500ac07820SSatish Balay   }
16510ac07820SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
16520ac07820SSatish Balay 
16530ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
16540ac07820SSatish Balay   work   = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
1655ca161407SBarry Smith   ierr   = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
16560ac07820SSatish Balay   nrecvs = work[rank];
1657ca161407SBarry Smith   ierr   = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
16580ac07820SSatish Balay   nmax   = work[rank];
16590ac07820SSatish Balay   PetscFree(work);
16600ac07820SSatish Balay 
16610ac07820SSatish Balay   /* post receives:   */
1662d64ed03dSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); CHKPTRQ(rvalues);
1663d64ed03dSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
16640ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
1665ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16660ac07820SSatish Balay   }
16670ac07820SSatish Balay 
16680ac07820SSatish Balay   /* do sends:
16690ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16700ac07820SSatish Balay      the ith processor
16710ac07820SSatish Balay   */
16720ac07820SSatish Balay   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
1673ca161407SBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
16740ac07820SSatish Balay   starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
16750ac07820SSatish Balay   starts[0] = 0;
16760ac07820SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16770ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16780ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16790ac07820SSatish Balay   }
16800ac07820SSatish Balay   ISRestoreIndices(is,&rows);
16810ac07820SSatish Balay 
16820ac07820SSatish Balay   starts[0] = 0;
16830ac07820SSatish Balay   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16840ac07820SSatish Balay   count = 0;
16850ac07820SSatish Balay   for ( i=0; i<size; i++ ) {
16860ac07820SSatish Balay     if (procs[i]) {
1687ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16880ac07820SSatish Balay     }
16890ac07820SSatish Balay   }
16900ac07820SSatish Balay   PetscFree(starts);
16910ac07820SSatish Balay 
16920ac07820SSatish Balay   base = owners[rank]*bs;
16930ac07820SSatish Balay 
16940ac07820SSatish Balay   /*  wait on receives */
16950ac07820SSatish Balay   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
16960ac07820SSatish Balay   source = lens + nrecvs;
16970ac07820SSatish Balay   count  = nrecvs; slen = 0;
16980ac07820SSatish Balay   while (count) {
1699ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
17000ac07820SSatish Balay     /* unpack receives into our local space */
1701ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
17020ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
17030ac07820SSatish Balay     lens[imdex]  = n;
17040ac07820SSatish Balay     slen += n;
17050ac07820SSatish Balay     count--;
17060ac07820SSatish Balay   }
17070ac07820SSatish Balay   PetscFree(recv_waits);
17080ac07820SSatish Balay 
17090ac07820SSatish Balay   /* move the data into the send scatter */
17100ac07820SSatish Balay   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
17110ac07820SSatish Balay   count = 0;
17120ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
17130ac07820SSatish Balay     values = rvalues + i*nmax;
17140ac07820SSatish Balay     for ( j=0; j<lens[i]; j++ ) {
17150ac07820SSatish Balay       lrows[count++] = values[j] - base;
17160ac07820SSatish Balay     }
17170ac07820SSatish Balay   }
17180ac07820SSatish Balay   PetscFree(rvalues); PetscFree(lens);
17190ac07820SSatish Balay   PetscFree(owner); PetscFree(nprocs);
17200ac07820SSatish Balay 
17210ac07820SSatish Balay   /* actually zap the local rows */
1722029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
17230ac07820SSatish Balay   PLogObjectParent(A,istmp);
1724a07cd24cSSatish Balay 
172572dacd9aSBarry Smith   /*
172672dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
172772dacd9aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
172872dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
172972dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
173072dacd9aSBarry Smith 
173172dacd9aSBarry Smith        Contributed by: Mathew Knepley
173272dacd9aSBarry Smith   */
173372dacd9aSBarry Smith   localdiag = PETSC_FALSE;
173472dacd9aSBarry Smith   if (diag && (l->A->M == l->A->N)) {
173572dacd9aSBarry Smith     localdiag = PETSC_TRUE;
173672dacd9aSBarry Smith     ierr      = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
173772dacd9aSBarry Smith   } else {
1738a07cd24cSSatish Balay     ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr);
173972dacd9aSBarry Smith   }
17400ac07820SSatish Balay   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
17410ac07820SSatish Balay   ierr = ISDestroy(istmp); CHKERRQ(ierr);
17420ac07820SSatish Balay 
174372dacd9aSBarry Smith   if (diag && (localdiag == PETSC_FALSE)) {
1744a07cd24cSSatish Balay     for ( i = 0; i < slen; i++ ) {
1745a07cd24cSSatish Balay       row = lrows[i] + rstart_bs;
1746a07cd24cSSatish Balay       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); CHKERRQ(ierr);
1747a07cd24cSSatish Balay     }
1748a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1749a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1750a07cd24cSSatish Balay   }
1751a07cd24cSSatish Balay   PetscFree(lrows);
1752a07cd24cSSatish Balay 
17530ac07820SSatish Balay   /* wait on sends */
17540ac07820SSatish Balay   if (nsends) {
1755d64ed03dSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
1756ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
17570ac07820SSatish Balay     PetscFree(send_status);
17580ac07820SSatish Balay   }
17590ac07820SSatish Balay   PetscFree(send_waits); PetscFree(svalues);
17600ac07820SSatish Balay 
17613a40ed3dSBarry Smith   PetscFunctionReturn(0);
17620ac07820SSatish Balay }
176372dacd9aSBarry Smith 
1764ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat);
17655615d1e5SSatish Balay #undef __FUNC__
17665615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ"
1767ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A)
1768ba4ca20aSSatish Balay {
1769ba4ca20aSSatish Balay   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
177025fdafccSSatish Balay   MPI_Comm    comm = A->comm;
1771133cdb44SSatish Balay   static int  called = 0;
17723a40ed3dSBarry Smith   int         ierr;
1773ba4ca20aSSatish Balay 
1774d64ed03dSBarry Smith   PetscFunctionBegin;
17753a40ed3dSBarry Smith   if (!a->rank) {
17763a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
177725fdafccSSatish Balay   }
177825fdafccSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1779133cdb44SSatish Balay   (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");
1780133cdb44SSatish Balay   (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");
17813a40ed3dSBarry Smith   PetscFunctionReturn(0);
1782ba4ca20aSSatish Balay }
17830ac07820SSatish Balay 
17845615d1e5SSatish Balay #undef __FUNC__
17855615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ"
1786ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A)
1787bb5a7306SBarry Smith {
1788bb5a7306SBarry Smith   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
1789bb5a7306SBarry Smith   int         ierr;
1790d64ed03dSBarry Smith 
1791d64ed03dSBarry Smith   PetscFunctionBegin;
1792bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A); CHKERRQ(ierr);
17933a40ed3dSBarry Smith   PetscFunctionReturn(0);
1794bb5a7306SBarry Smith }
1795bb5a7306SBarry Smith 
17960ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int);
17970ac07820SSatish Balay 
179879bdfe76SSatish Balay /* -------------------------------------------------------------------*/
179979bdfe76SSatish Balay static struct _MatOps MatOps = {
1800bd16c2feSSatish Balay   MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ,
18014c50302cSBarry Smith   MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0,
18024c50302cSBarry Smith   0,0,0,0,
18030ac07820SSatish Balay   0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ,
18040e95ebc0SSatish Balay   0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ,
180558667388SSatish Balay   MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ,
18064c50302cSBarry Smith   MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0,
18074c50302cSBarry Smith   0,0,0,MatGetSize_MPIBAIJ,
18084c50302cSBarry Smith   MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0,
180994a9d846SBarry Smith   0,0,MatConvertSameType_MPIBAIJ,0,0,
1810d212a18eSSatish Balay   0,0,0,MatGetSubMatrices_MPIBAIJ,
1811ba4ca20aSSatish Balay   MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ,
1812bb5a7306SBarry Smith   MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ,
1813ab26458aSBarry Smith   0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ,0,MatSetValuesBlocked_MPIBAIJ};
181479bdfe76SSatish Balay 
181579bdfe76SSatish Balay 
18165615d1e5SSatish Balay #undef __FUNC__
18175615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ"
181879bdfe76SSatish Balay /*@C
181979bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
182079bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
182179bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
182279bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
182379bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
182479bdfe76SSatish Balay 
1825db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1826db81eaa0SLois Curfman McInnes 
182779bdfe76SSatish Balay    Input Parameters:
1828db81eaa0SLois Curfman McInnes +  comm - MPI communicator
182979bdfe76SSatish Balay .  bs   - size of blockk
183079bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
183192e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
183292e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
183392e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
183492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
183592e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
183679bdfe76SSatish Balay .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
183792e8d321SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
183879bdfe76SSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
183979bdfe76SSatish Balay            submatrix  (same for all local rows)
184092e8d321SLois Curfman McInnes .  d_nzz - array containing the number of block nonzeros in the various block rows
184192e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
1842db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
184392e8d321SLois Curfman McInnes .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
184479bdfe76SSatish Balay            submatrix (same for all local rows).
1845db81eaa0SLois Curfman McInnes -  o_nzz - array containing the number of nonzeros in the various block rows of the
184692e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
184792e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
184879bdfe76SSatish Balay 
184979bdfe76SSatish Balay    Output Parameter:
185079bdfe76SSatish Balay .  A - the matrix
185179bdfe76SSatish Balay 
1852db81eaa0SLois Curfman McInnes    Options Database Keys:
1853db81eaa0SLois Curfman McInnes .   -mat_no_unroll - uses code that does not unroll the loops in the
1854db81eaa0SLois Curfman McInnes                      block calculations (much slower)
1855db81eaa0SLois Curfman McInnes .   -mat_block_size - size of the blocks to use
18563ffaccefSLois Curfman McInnes 
1857b259b22eSLois Curfman McInnes    Notes:
185879bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
185979bdfe76SSatish Balay    (possibly both).
186079bdfe76SSatish Balay 
186179bdfe76SSatish Balay    Storage Information:
186279bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
186379bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
186479bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
186579bdfe76SSatish Balay    local matrix (a rectangular submatrix).
186679bdfe76SSatish Balay 
186779bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
186879bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
186979bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
187079bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
187179bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
187279bdfe76SSatish Balay 
187379bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
187479bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
187579bdfe76SSatish Balay 
1876db81eaa0SLois Curfman McInnes .vb
1877db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
1878db81eaa0SLois Curfman McInnes           -------------------
1879db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
1880db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
1881db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
1882db81eaa0SLois Curfman McInnes           -------------------
1883db81eaa0SLois Curfman McInnes .ve
188479bdfe76SSatish Balay 
188579bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
188679bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
188779bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
188857b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
188979bdfe76SSatish Balay 
1890d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
1891d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
189279bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
189392e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
189492e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
18956da5968aSLois Curfman McInnes    matrices.
189679bdfe76SSatish Balay 
189792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
189879bdfe76SSatish Balay 
1899db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIAIJ()
190079bdfe76SSatish Balay @*/
190179bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,
190279bdfe76SSatish Balay                     int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
190379bdfe76SSatish Balay {
190479bdfe76SSatish Balay   Mat          B;
190579bdfe76SSatish Balay   Mat_MPIBAIJ  *b;
1906133cdb44SSatish Balay   int          ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size,flg;
190779bdfe76SSatish Balay 
1908d64ed03dSBarry Smith   PetscFunctionBegin;
1909a8c6a408SBarry Smith   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive");
19103914022bSBarry Smith 
19113914022bSBarry Smith   MPI_Comm_size(comm,&size);
19123914022bSBarry Smith   if (size == 1) {
19133914022bSBarry Smith     if (M == PETSC_DECIDE) M = m;
19143914022bSBarry Smith     if (N == PETSC_DECIDE) N = n;
19153914022bSBarry Smith     ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A); CHKERRQ(ierr);
19163a40ed3dSBarry Smith     PetscFunctionReturn(0);
19173914022bSBarry Smith   }
19183914022bSBarry Smith 
191979bdfe76SSatish Balay   *A = 0;
1920f830108cSBarry Smith   PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,comm,MatDestroy,MatView);
192179bdfe76SSatish Balay   PLogObjectCreate(B);
192279bdfe76SSatish Balay   B->data       = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b);
192379bdfe76SSatish Balay   PetscMemzero(b,sizeof(Mat_MPIBAIJ));
1924f830108cSBarry Smith   PetscMemcpy(B->ops,&MatOps,sizeof(struct _MatOps));
19254c50302cSBarry Smith 
1926e1311b90SBarry Smith   B->ops->destroy    = MatDestroy_MPIBAIJ;
1927e1311b90SBarry Smith   B->ops->view       = MatView_MPIBAIJ;
192890f02eecSBarry Smith   B->mapping    = 0;
192979bdfe76SSatish Balay   B->factor     = 0;
193079bdfe76SSatish Balay   B->assembled  = PETSC_FALSE;
193179bdfe76SSatish Balay 
1932e0fa3b82SLois Curfman McInnes   B->insertmode = NOT_SET_VALUES;
193379bdfe76SSatish Balay   MPI_Comm_rank(comm,&b->rank);
193479bdfe76SSatish Balay   MPI_Comm_size(comm,&b->size);
193579bdfe76SSatish Balay 
1936d64ed03dSBarry Smith   if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) {
1937a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz");
1938d64ed03dSBarry Smith   }
1939a8c6a408SBarry Smith   if ( M == PETSC_DECIDE && m == PETSC_DECIDE) {
1940a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified");
1941a8c6a408SBarry Smith   }
1942a8c6a408SBarry Smith   if ( N == PETSC_DECIDE && n == PETSC_DECIDE) {
1943a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified");
1944a8c6a408SBarry Smith   }
1945cee3aa6bSSatish Balay   if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE;
1946cee3aa6bSSatish Balay   if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE;
194779bdfe76SSatish Balay 
194879bdfe76SSatish Balay   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
194979bdfe76SSatish Balay     work[0] = m; work[1] = n;
195079bdfe76SSatish Balay     mbs = m/bs; nbs = n/bs;
1951ca161407SBarry Smith     ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr);
195279bdfe76SSatish Balay     if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;}
195379bdfe76SSatish Balay     if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;}
195479bdfe76SSatish Balay   }
195579bdfe76SSatish Balay   if (m == PETSC_DECIDE) {
195679bdfe76SSatish Balay     Mbs = M/bs;
1957a8c6a408SBarry Smith     if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize");
195879bdfe76SSatish Balay     mbs = Mbs/b->size + ((Mbs % b->size) > b->rank);
195979bdfe76SSatish Balay     m   = mbs*bs;
196079bdfe76SSatish Balay   }
196179bdfe76SSatish Balay   if (n == PETSC_DECIDE) {
196279bdfe76SSatish Balay     Nbs = N/bs;
1963a8c6a408SBarry Smith     if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize");
196479bdfe76SSatish Balay     nbs = Nbs/b->size + ((Nbs % b->size) > b->rank);
196579bdfe76SSatish Balay     n   = nbs*bs;
196679bdfe76SSatish Balay   }
1967a8c6a408SBarry Smith   if (mbs*bs != m || nbs*bs != n) {
1968a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize");
1969a8c6a408SBarry Smith   }
197079bdfe76SSatish Balay 
197179bdfe76SSatish Balay   b->m = m; B->m = m;
197279bdfe76SSatish Balay   b->n = n; B->n = n;
197379bdfe76SSatish Balay   b->N = N; B->N = N;
197479bdfe76SSatish Balay   b->M = M; B->M = M;
197579bdfe76SSatish Balay   b->bs  = bs;
197679bdfe76SSatish Balay   b->bs2 = bs*bs;
197779bdfe76SSatish Balay   b->mbs = mbs;
197879bdfe76SSatish Balay   b->nbs = nbs;
197979bdfe76SSatish Balay   b->Mbs = Mbs;
198079bdfe76SSatish Balay   b->Nbs = Nbs;
198179bdfe76SSatish Balay 
198279bdfe76SSatish Balay   /* build local table of row and column ownerships */
198379bdfe76SSatish Balay   b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners);
1984f09e8eb9SSatish Balay   PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
19850ac07820SSatish Balay   b->cowners = b->rowners + b->size + 2;
1986ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
198779bdfe76SSatish Balay   b->rowners[0] = 0;
198879bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
198979bdfe76SSatish Balay     b->rowners[i] += b->rowners[i-1];
199079bdfe76SSatish Balay   }
199179bdfe76SSatish Balay   b->rstart    = b->rowners[b->rank];
199279bdfe76SSatish Balay   b->rend      = b->rowners[b->rank+1];
19934fa0d573SSatish Balay   b->rstart_bs = b->rstart * bs;
19944fa0d573SSatish Balay   b->rend_bs   = b->rend * bs;
19954fa0d573SSatish Balay 
1996ca161407SBarry Smith   ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
199779bdfe76SSatish Balay   b->cowners[0] = 0;
199879bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
199979bdfe76SSatish Balay     b->cowners[i] += b->cowners[i-1];
200079bdfe76SSatish Balay   }
200179bdfe76SSatish Balay   b->cstart    = b->cowners[b->rank];
200279bdfe76SSatish Balay   b->cend      = b->cowners[b->rank+1];
20034fa0d573SSatish Balay   b->cstart_bs = b->cstart * bs;
20044fa0d573SSatish Balay   b->cend_bs   = b->cend * bs;
200579bdfe76SSatish Balay 
2006a07cd24cSSatish Balay 
200779bdfe76SSatish Balay   if (d_nz == PETSC_DEFAULT) d_nz = 5;
2008029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr);
200979bdfe76SSatish Balay   PLogObjectParent(B,b->A);
201079bdfe76SSatish Balay   if (o_nz == PETSC_DEFAULT) o_nz = 0;
2011029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr);
201279bdfe76SSatish Balay   PLogObjectParent(B,b->B);
201379bdfe76SSatish Balay 
201479bdfe76SSatish Balay   /* build cache for off array entries formed */
201579bdfe76SSatish Balay   ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr);
201690f02eecSBarry Smith   b->donotstash  = 0;
201779bdfe76SSatish Balay   b->colmap      = 0;
201879bdfe76SSatish Balay   b->garray      = 0;
201979bdfe76SSatish Balay   b->roworiented = 1;
202079bdfe76SSatish Balay 
202130793edcSSatish Balay   /* stuff used in block assembly */
202230793edcSSatish Balay   b->barray       = 0;
202330793edcSSatish Balay 
202479bdfe76SSatish Balay   /* stuff used for matrix vector multiply */
202579bdfe76SSatish Balay   b->lvec         = 0;
202679bdfe76SSatish Balay   b->Mvctx        = 0;
202779bdfe76SSatish Balay 
202879bdfe76SSatish Balay   /* stuff for MatGetRow() */
202979bdfe76SSatish Balay   b->rowindices   = 0;
203079bdfe76SSatish Balay   b->rowvalues    = 0;
203179bdfe76SSatish Balay   b->getrowactive = PETSC_FALSE;
203279bdfe76SSatish Balay 
2033a07cd24cSSatish Balay   /* hash table stuff */
2034a07cd24cSSatish Balay   b->ht           = 0;
2035187ce0cbSSatish Balay   b->hd           = 0;
20360bdbc534SSatish Balay   b->ht_size      = 0;
2037133cdb44SSatish Balay   b->ht_flag      = 0;
203825fdafccSSatish Balay   b->ht_fact      = 0;
2039187ce0cbSSatish Balay   b->ht_total_ct  = 0;
2040187ce0cbSSatish Balay   b->ht_insert_ct = 0;
2041a07cd24cSSatish Balay 
204279bdfe76SSatish Balay   *A = B;
2043133cdb44SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg); CHKERRQ(ierr);
2044133cdb44SSatish Balay   if (flg) {
2045133cdb44SSatish Balay     double fact = 1.39;
2046133cdb44SSatish Balay     ierr = MatSetOption(B,MAT_USE_HASH_TABLE); CHKERRQ(ierr);
2047133cdb44SSatish Balay     ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,&flg); CHKERRQ(ierr);
2048133cdb44SSatish Balay     if (fact <= 1.0) fact = 1.39;
2049133cdb44SSatish Balay     ierr = MatMPIBAIJSetHashTableFactor(B,fact); CHKERRQ(ierr);
2050133cdb44SSatish Balay     PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact);
2051133cdb44SSatish Balay   }
20523a40ed3dSBarry Smith   PetscFunctionReturn(0);
205379bdfe76SSatish Balay }
2054026e39d0SSatish Balay 
20555615d1e5SSatish Balay #undef __FUNC__
20565615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ"
20570ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues)
20580ac07820SSatish Balay {
20590ac07820SSatish Balay   Mat         mat;
20600ac07820SSatish Balay   Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data;
20610ac07820SSatish Balay   int         ierr, len=0, flg;
20620ac07820SSatish Balay 
2063d64ed03dSBarry Smith   PetscFunctionBegin;
20640ac07820SSatish Balay   *newmat       = 0;
2065f830108cSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,matin->comm,MatDestroy,MatView);
20660ac07820SSatish Balay   PLogObjectCreate(mat);
20670ac07820SSatish Balay   mat->data       = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a);
2068f830108cSBarry Smith   PetscMemcpy(mat->ops,&MatOps,sizeof(struct _MatOps));
2069e1311b90SBarry Smith   mat->ops->destroy    = MatDestroy_MPIBAIJ;
2070e1311b90SBarry Smith   mat->ops->view       = MatView_MPIBAIJ;
20710ac07820SSatish Balay   mat->factor     = matin->factor;
20720ac07820SSatish Balay   mat->assembled  = PETSC_TRUE;
20730ac07820SSatish Balay 
20740ac07820SSatish Balay   a->m = mat->m   = oldmat->m;
20750ac07820SSatish Balay   a->n = mat->n   = oldmat->n;
20760ac07820SSatish Balay   a->M = mat->M   = oldmat->M;
20770ac07820SSatish Balay   a->N = mat->N   = oldmat->N;
20780ac07820SSatish Balay 
20790ac07820SSatish Balay   a->bs  = oldmat->bs;
20800ac07820SSatish Balay   a->bs2 = oldmat->bs2;
20810ac07820SSatish Balay   a->mbs = oldmat->mbs;
20820ac07820SSatish Balay   a->nbs = oldmat->nbs;
20830ac07820SSatish Balay   a->Mbs = oldmat->Mbs;
20840ac07820SSatish Balay   a->Nbs = oldmat->Nbs;
20850ac07820SSatish Balay 
20860ac07820SSatish Balay   a->rstart       = oldmat->rstart;
20870ac07820SSatish Balay   a->rend         = oldmat->rend;
20880ac07820SSatish Balay   a->cstart       = oldmat->cstart;
20890ac07820SSatish Balay   a->cend         = oldmat->cend;
20900ac07820SSatish Balay   a->size         = oldmat->size;
20910ac07820SSatish Balay   a->rank         = oldmat->rank;
2092e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
20930ac07820SSatish Balay   a->rowvalues    = 0;
20940ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
209530793edcSSatish Balay   a->barray       = 0;
20960ac07820SSatish Balay 
2097133cdb44SSatish Balay   /* hash table stuff */
2098133cdb44SSatish Balay   a->ht           = 0;
2099133cdb44SSatish Balay   a->hd           = 0;
2100133cdb44SSatish Balay   a->ht_size      = 0;
2101133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
210225fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2103133cdb44SSatish Balay   a->ht_total_ct  = 0;
2104133cdb44SSatish Balay   a->ht_insert_ct = 0;
2105133cdb44SSatish Balay 
2106133cdb44SSatish Balay 
21070ac07820SSatish Balay   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
2108f09e8eb9SSatish Balay   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
21090ac07820SSatish Balay   a->cowners = a->rowners + a->size + 2;
21100ac07820SSatish Balay   PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));
21110ac07820SSatish Balay   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
21120ac07820SSatish Balay   if (oldmat->colmap) {
21130ac07820SSatish Balay     a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap);
21140ac07820SSatish Balay     PLogObjectMemory(mat,(a->Nbs)*sizeof(int));
21150ac07820SSatish Balay     PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));
21160ac07820SSatish Balay   } else a->colmap = 0;
21170ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) {
21180ac07820SSatish Balay     a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray);
21190ac07820SSatish Balay     PLogObjectMemory(mat,len*sizeof(int));
21200ac07820SSatish Balay     PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
21210ac07820SSatish Balay   } else a->garray = 0;
21220ac07820SSatish Balay 
21230ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
21240ac07820SSatish Balay   PLogObjectParent(mat,a->lvec);
21250ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
21260ac07820SSatish Balay   PLogObjectParent(mat,a->Mvctx);
21270ac07820SSatish Balay   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
21280ac07820SSatish Balay   PLogObjectParent(mat,a->A);
21290ac07820SSatish Balay   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
21300ac07820SSatish Balay   PLogObjectParent(mat,a->B);
21310ac07820SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
21320ac07820SSatish Balay   if (flg) {
21330ac07820SSatish Balay     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
21340ac07820SSatish Balay   }
21350ac07820SSatish Balay   *newmat = mat;
21363a40ed3dSBarry Smith   PetscFunctionReturn(0);
21370ac07820SSatish Balay }
213857b952d6SSatish Balay 
213957b952d6SSatish Balay #include "sys.h"
214057b952d6SSatish Balay 
21415615d1e5SSatish Balay #undef __FUNC__
21425615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ"
214357b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat)
214457b952d6SSatish Balay {
214557b952d6SSatish Balay   Mat          A;
214657b952d6SSatish Balay   int          i, nz, ierr, j,rstart, rend, fd;
214757b952d6SSatish Balay   Scalar       *vals,*buf;
214857b952d6SSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
214957b952d6SSatish Balay   MPI_Status   status;
2150cee3aa6bSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
215157b952d6SSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf;
215240011551SBarry Smith   int          flg,tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
215357b952d6SSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
215457b952d6SSatish Balay   int          dcount,kmax,k,nzcount,tmp;
215557b952d6SSatish Balay 
2156d64ed03dSBarry Smith   PetscFunctionBegin;
215757b952d6SSatish Balay   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
215857b952d6SSatish Balay 
215957b952d6SSatish Balay   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
216057b952d6SSatish Balay   if (!rank) {
216157b952d6SSatish Balay     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
2162e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr);
2163a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
2164d64ed03dSBarry Smith     if (header[3] < 0) {
2165a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ");
2166d64ed03dSBarry Smith     }
21676c5fab8fSBarry Smith   }
2168d64ed03dSBarry Smith 
2169ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
217057b952d6SSatish Balay   M = header[1]; N = header[2];
217157b952d6SSatish Balay 
2172a8c6a408SBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices");
217357b952d6SSatish Balay 
217457b952d6SSatish Balay   /*
217557b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
217657b952d6SSatish Balay      divisible by the blocksize
217757b952d6SSatish Balay   */
217857b952d6SSatish Balay   Mbs        = M/bs;
217957b952d6SSatish Balay   extra_rows = bs - M + bs*(Mbs);
218057b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
218157b952d6SSatish Balay   else                  Mbs++;
218257b952d6SSatish Balay   if (extra_rows &&!rank) {
2183b0267e0aSLois Curfman McInnes     PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n");
218457b952d6SSatish Balay   }
2185537820f0SBarry Smith 
218657b952d6SSatish Balay   /* determine ownership of all rows */
218757b952d6SSatish Balay   mbs = Mbs/size + ((Mbs % size) > rank);
218857b952d6SSatish Balay   m   = mbs * bs;
2189cee3aa6bSSatish Balay   rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners);
2190cee3aa6bSSatish Balay   browners = rowners + size + 1;
2191ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
219257b952d6SSatish Balay   rowners[0] = 0;
2193cee3aa6bSSatish Balay   for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1];
2194cee3aa6bSSatish Balay   for ( i=0; i<=size;  i++ ) browners[i] = rowners[i]*bs;
219557b952d6SSatish Balay   rstart = rowners[rank];
219657b952d6SSatish Balay   rend   = rowners[rank+1];
219757b952d6SSatish Balay 
219857b952d6SSatish Balay   /* distribute row lengths to all processors */
219957b952d6SSatish Balay   locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens);
220057b952d6SSatish Balay   if (!rank) {
220157b952d6SSatish Balay     rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths);
2202e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr);
220357b952d6SSatish Balay     for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
220457b952d6SSatish Balay     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
2205cee3aa6bSSatish Balay     for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i];
2206ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
220757b952d6SSatish Balay     PetscFree(sndcounts);
2208d64ed03dSBarry Smith   } else {
2209ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr);
221057b952d6SSatish Balay   }
221157b952d6SSatish Balay 
221257b952d6SSatish Balay   if (!rank) {
221357b952d6SSatish Balay     /* calculate the number of nonzeros on each processor */
221457b952d6SSatish Balay     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
221557b952d6SSatish Balay     PetscMemzero(procsnz,size*sizeof(int));
221657b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
221757b952d6SSatish Balay       for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) {
221857b952d6SSatish Balay         procsnz[i] += rowlengths[j];
221957b952d6SSatish Balay       }
222057b952d6SSatish Balay     }
222157b952d6SSatish Balay     PetscFree(rowlengths);
222257b952d6SSatish Balay 
222357b952d6SSatish Balay     /* determine max buffer needed and allocate it */
222457b952d6SSatish Balay     maxnz = 0;
222557b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
222657b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
222757b952d6SSatish Balay     }
222857b952d6SSatish Balay     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
222957b952d6SSatish Balay 
223057b952d6SSatish Balay     /* read in my part of the matrix column indices  */
223157b952d6SSatish Balay     nz = procsnz[0];
223257b952d6SSatish Balay     ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf);
223357b952d6SSatish Balay     mycols = ibuf;
2234cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2235e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr);
2236cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2237cee3aa6bSSatish Balay 
223857b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
223957b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
224057b952d6SSatish Balay       nz   = procsnz[i];
2241e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
2242ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
224357b952d6SSatish Balay     }
224457b952d6SSatish Balay     /* read in the stuff for the last proc */
224557b952d6SSatish Balay     if ( size != 1 ) {
224657b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2247e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
224857b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i;
2249ca161407SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
225057b952d6SSatish Balay     }
225157b952d6SSatish Balay     PetscFree(cols);
2252d64ed03dSBarry Smith   } else {
225357b952d6SSatish Balay     /* determine buffer space needed for message */
225457b952d6SSatish Balay     nz = 0;
225557b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
225657b952d6SSatish Balay       nz += locrowlens[i];
225757b952d6SSatish Balay     }
225857b952d6SSatish Balay     ibuf   = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf);
225957b952d6SSatish Balay     mycols = ibuf;
226057b952d6SSatish Balay     /* receive message of column indices*/
2261ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2262ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
2263a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
226457b952d6SSatish Balay   }
226557b952d6SSatish Balay 
226657b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2267cee3aa6bSSatish Balay   dlens  = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens);
2268cee3aa6bSSatish Balay   odlens = dlens + (rend-rstart);
226957b952d6SSatish Balay   mask   = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask);
2270cee3aa6bSSatish Balay   PetscMemzero(mask,3*Mbs*sizeof(int));
227157b952d6SSatish Balay   masked1 = mask    + Mbs;
227257b952d6SSatish Balay   masked2 = masked1 + Mbs;
227357b952d6SSatish Balay   rowcount = 0; nzcount = 0;
227457b952d6SSatish Balay   for ( i=0; i<mbs; i++ ) {
227557b952d6SSatish Balay     dcount  = 0;
227657b952d6SSatish Balay     odcount = 0;
227757b952d6SSatish Balay     for ( j=0; j<bs; j++ ) {
227857b952d6SSatish Balay       kmax = locrowlens[rowcount];
227957b952d6SSatish Balay       for ( k=0; k<kmax; k++ ) {
228057b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
228157b952d6SSatish Balay         if (!mask[tmp]) {
228257b952d6SSatish Balay           mask[tmp] = 1;
228357b952d6SSatish Balay           if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp;
228457b952d6SSatish Balay           else masked1[dcount++] = tmp;
228557b952d6SSatish Balay         }
228657b952d6SSatish Balay       }
228757b952d6SSatish Balay       rowcount++;
228857b952d6SSatish Balay     }
2289cee3aa6bSSatish Balay 
229057b952d6SSatish Balay     dlens[i]  = dcount;
229157b952d6SSatish Balay     odlens[i] = odcount;
2292cee3aa6bSSatish Balay 
229357b952d6SSatish Balay     /* zero out the mask elements we set */
229457b952d6SSatish Balay     for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0;
229557b952d6SSatish Balay     for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0;
229657b952d6SSatish Balay   }
2297cee3aa6bSSatish Balay 
229857b952d6SSatish Balay   /* create our matrix */
2299537820f0SBarry Smith   ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);
2300537820f0SBarry Smith          CHKERRQ(ierr);
230157b952d6SSatish Balay   A = *newmat;
23026d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
230357b952d6SSatish Balay 
230457b952d6SSatish Balay   if (!rank) {
230557b952d6SSatish Balay     buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf);
230657b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
230757b952d6SSatish Balay     nz = procsnz[0];
230857b952d6SSatish Balay     vals = buf;
2309cee3aa6bSSatish Balay     mycols = ibuf;
2310cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2311e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
2312cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2313537820f0SBarry Smith 
231457b952d6SSatish Balay     /* insert into matrix */
231557b952d6SSatish Balay     jj      = rstart*bs;
231657b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
231757b952d6SSatish Balay       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
231857b952d6SSatish Balay       mycols += locrowlens[i];
231957b952d6SSatish Balay       vals   += locrowlens[i];
232057b952d6SSatish Balay       jj++;
232157b952d6SSatish Balay     }
232257b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
232357b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
232457b952d6SSatish Balay       nz   = procsnz[i];
232557b952d6SSatish Balay       vals = buf;
2326e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
2327ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
232857b952d6SSatish Balay     }
232957b952d6SSatish Balay     /* the last proc */
233057b952d6SSatish Balay     if ( size != 1 ){
233157b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2332cee3aa6bSSatish Balay       vals = buf;
2333e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
233457b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0;
2335ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
233657b952d6SSatish Balay     }
233757b952d6SSatish Balay     PetscFree(procsnz);
2338d64ed03dSBarry Smith   } else {
233957b952d6SSatish Balay     /* receive numeric values */
234057b952d6SSatish Balay     buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf);
234157b952d6SSatish Balay 
234257b952d6SSatish Balay     /* receive message of values*/
234357b952d6SSatish Balay     vals   = buf;
2344cee3aa6bSSatish Balay     mycols = ibuf;
2345ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2346ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2347a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
234857b952d6SSatish Balay 
234957b952d6SSatish Balay     /* insert into matrix */
235057b952d6SSatish Balay     jj      = rstart*bs;
2351cee3aa6bSSatish Balay     for ( i=0; i<m; i++ ) {
235257b952d6SSatish Balay       ierr    = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
235357b952d6SSatish Balay       mycols += locrowlens[i];
235457b952d6SSatish Balay       vals   += locrowlens[i];
235557b952d6SSatish Balay       jj++;
235657b952d6SSatish Balay     }
235757b952d6SSatish Balay   }
235857b952d6SSatish Balay   PetscFree(locrowlens);
235957b952d6SSatish Balay   PetscFree(buf);
236057b952d6SSatish Balay   PetscFree(ibuf);
236157b952d6SSatish Balay   PetscFree(rowners);
236257b952d6SSatish Balay   PetscFree(dlens);
2363cee3aa6bSSatish Balay   PetscFree(mask);
23646d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
23656d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
23663a40ed3dSBarry Smith   PetscFunctionReturn(0);
236757b952d6SSatish Balay }
236857b952d6SSatish Balay 
236957b952d6SSatish Balay 
2370133cdb44SSatish Balay 
2371133cdb44SSatish Balay #undef __FUNC__
2372133cdb44SSatish Balay #define __FUNC__ "MatMPIBAIJSetHashTableFactor"
2373133cdb44SSatish Balay /*@
2374133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2375133cdb44SSatish Balay 
2376133cdb44SSatish Balay    Input Parameters:
2377133cdb44SSatish Balay .  mat  - the matrix
2378133cdb44SSatish Balay .  fact - factor
2379133cdb44SSatish Balay 
2380fee21e36SBarry Smith    Collective on Mat
2381fee21e36SBarry Smith 
2382133cdb44SSatish Balay   Notes:
2383133cdb44SSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2384133cdb44SSatish Balay 
2385133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2386133cdb44SSatish Balay 
2387133cdb44SSatish Balay .seealso: MatSetOption()
2388133cdb44SSatish Balay @*/
2389133cdb44SSatish Balay int MatMPIBAIJSetHashTableFactor(Mat mat,double fact)
2390133cdb44SSatish Balay {
239125fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2392133cdb44SSatish Balay 
2393133cdb44SSatish Balay   PetscFunctionBegin;
2394133cdb44SSatish Balay   PetscValidHeaderSpecific(mat,MAT_COOKIE);
239525fdafccSSatish Balay   if (mat->type != MATMPIBAIJ) {
2396133cdb44SSatish Balay       SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only.");
2397133cdb44SSatish Balay   }
2398133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*) mat->data;
2399133cdb44SSatish Balay   baij->ht_fact = fact;
2400133cdb44SSatish Balay   PetscFunctionReturn(0);
2401133cdb44SSatish Balay }
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