1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*e20fef11SSatish Balay static char vcid[] = "$Id: mpibaij.c,v 1.125 1998/05/29 18:52:46 bsmith Exp balay $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 52526cff3SSatish Balay #include "pinclude/pviewer.h" /*I "mat.h" I*/ 670f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" 7c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 879bdfe76SSatish Balay 957b952d6SSatish Balay 1057b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1157b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 12d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 13d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **); 143b2fbd54SBarry Smith 15537820f0SBarry Smith /* 16537820f0SBarry Smith Local utility routine that creates a mapping from the global column 1757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 1857b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 1957b952d6SSatish Balay length of colmap equals the global matrix length. 2057b952d6SSatish Balay */ 215615d1e5SSatish Balay #undef __FUNC__ 225615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 2357b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 2457b952d6SSatish Balay { 2557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 2657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 27928fc39bSSatish Balay int nbs = B->nbs,i,bs=B->bs;; 2857b952d6SSatish Balay 29d64ed03dSBarry Smith PetscFunctionBegin; 30758f045eSSatish Balay baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap); 3157b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 3257b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 33928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 343a40ed3dSBarry Smith PetscFunctionReturn(0); 3557b952d6SSatish Balay } 3657b952d6SSatish Balay 3780c1aa95SSatish Balay #define CHUNKSIZE 10 3880c1aa95SSatish Balay 39f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 4080c1aa95SSatish Balay { \ 4180c1aa95SSatish Balay \ 4280c1aa95SSatish Balay brow = row/bs; \ 4380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 44ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 4580c1aa95SSatish Balay bcol = col/bs; \ 4680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 47ab26458aSBarry Smith low = 0; high = nrow; \ 48ab26458aSBarry Smith while (high-low > 3) { \ 49ab26458aSBarry Smith t = (low+high)/2; \ 50ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 51ab26458aSBarry Smith else low = t; \ 52ab26458aSBarry Smith } \ 53ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 5480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 5580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 5680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 57eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 58eada6651SSatish Balay else *bap = value; \ 59ac7a638eSSatish Balay goto a_noinsert; \ 6080c1aa95SSatish Balay } \ 6180c1aa95SSatish Balay } \ 6289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 63a8c6a408SBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 6480c1aa95SSatish Balay if (nrow >= rmax) { \ 6580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 6680c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 6780c1aa95SSatish Balay Scalar *new_a; \ 6880c1aa95SSatish Balay \ 69a8c6a408SBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 7089280ab3SLois Curfman McInnes \ 7180c1aa95SSatish Balay /* malloc new storage space */ \ 7280c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 7380c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 7480c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 7580c1aa95SSatish Balay new_i = new_j + new_nz; \ 7680c1aa95SSatish Balay \ 7780c1aa95SSatish Balay /* copy over old data into new slots */ \ 7880c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 7980c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 8080c1aa95SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \ 8180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 8280c1aa95SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 8380c1aa95SSatish Balay len*sizeof(int)); \ 8480c1aa95SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \ 8580c1aa95SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 8680c1aa95SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 8780c1aa95SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); \ 8880c1aa95SSatish Balay /* free up old matrix storage */ \ 8980c1aa95SSatish Balay PetscFree(a->a); \ 9080c1aa95SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 9180c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 9280c1aa95SSatish Balay a->singlemalloc = 1; \ 9380c1aa95SSatish Balay \ 9480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 9680c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 9780c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 9880c1aa95SSatish Balay a->reallocs++; \ 9980c1aa95SSatish Balay a->nz++; \ 10080c1aa95SSatish Balay } \ 10180c1aa95SSatish Balay N = nrow++ - 1; \ 10280c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 10380c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 10480c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 10580c1aa95SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 10680c1aa95SSatish Balay } \ 10780c1aa95SSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 10880c1aa95SSatish Balay rp[_i] = bcol; \ 10980c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110ac7a638eSSatish Balay a_noinsert:; \ 11180c1aa95SSatish Balay ailen[brow] = nrow; \ 11280c1aa95SSatish Balay } 11357b952d6SSatish Balay 114ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 115ac7a638eSSatish Balay { \ 116ac7a638eSSatish Balay \ 117ac7a638eSSatish Balay brow = row/bs; \ 118ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 119ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 120ac7a638eSSatish Balay bcol = col/bs; \ 121ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 122ac7a638eSSatish Balay low = 0; high = nrow; \ 123ac7a638eSSatish Balay while (high-low > 3) { \ 124ac7a638eSSatish Balay t = (low+high)/2; \ 125ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 126ac7a638eSSatish Balay else low = t; \ 127ac7a638eSSatish Balay } \ 128ac7a638eSSatish Balay for ( _i=low; _i<high; _i++ ) { \ 129ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 130ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 131ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 132ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 133ac7a638eSSatish Balay else *bap = value; \ 134ac7a638eSSatish Balay goto b_noinsert; \ 135ac7a638eSSatish Balay } \ 136ac7a638eSSatish Balay } \ 13789280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 138a8c6a408SBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 139ac7a638eSSatish Balay if (nrow >= rmax) { \ 140ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 14174c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 142ac7a638eSSatish Balay Scalar *new_a; \ 143ac7a638eSSatish Balay \ 144a8c6a408SBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 14589280ab3SLois Curfman McInnes \ 146ac7a638eSSatish Balay /* malloc new storage space */ \ 14774c639caSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \ 148ac7a638eSSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 149ac7a638eSSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 150ac7a638eSSatish Balay new_i = new_j + new_nz; \ 151ac7a638eSSatish Balay \ 152ac7a638eSSatish Balay /* copy over old data into new slots */ \ 153ac7a638eSSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \ 15474c639caSSatish Balay for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 155ac7a638eSSatish Balay PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int)); \ 156ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 157ac7a638eSSatish Balay PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \ 158ac7a638eSSatish Balay len*sizeof(int)); \ 159ac7a638eSSatish Balay PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar)); \ 160ac7a638eSSatish Balay PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 161ac7a638eSSatish Balay PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 162ac7a638eSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar)); \ 163ac7a638eSSatish Balay /* free up old matrix storage */ \ 16474c639caSSatish Balay PetscFree(b->a); \ 16574c639caSSatish Balay if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \ 16674c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 16774c639caSSatish Balay b->singlemalloc = 1; \ 168ac7a638eSSatish Balay \ 169ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 170ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 17174c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 17274c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 17374c639caSSatish Balay b->reallocs++; \ 17474c639caSSatish Balay b->nz++; \ 175ac7a638eSSatish Balay } \ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 180ac7a638eSSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 181ac7a638eSSatish Balay } \ 182ac7a638eSSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1895615d1e5SSatish Balay #undef __FUNC__ 1905615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 191ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 19457b952d6SSatish Balay Scalar value; 1954fa0d573SSatish Balay int ierr,i,j,row,col; 1964fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 1974fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 1984fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 19957b952d6SSatish Balay 200eada6651SSatish Balay /* Some Variables required in the macro */ 20180c1aa95SSatish Balay Mat A = baij->A; 20280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 203ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 204ac7a638eSSatish Balay Scalar *aa=a->a; 205ac7a638eSSatish Balay 206ac7a638eSSatish Balay Mat B = baij->B; 207ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data; 208ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 209ac7a638eSSatish Balay Scalar *ba=b->a; 210ac7a638eSSatish Balay 211ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 212ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 213ac7a638eSSatish Balay Scalar *ap,*bap; 21480c1aa95SSatish Balay 215d64ed03dSBarry Smith PetscFunctionBegin; 21657b952d6SSatish Balay for ( i=0; i<m; i++ ) { 2173a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 218a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 219a8c6a408SBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 220639f9d9dSBarry Smith #endif 22157b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22257b952d6SSatish Balay row = im[i] - rstart_orig; 22357b952d6SSatish Balay for ( j=0; j<n; j++ ) { 22457b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22557b952d6SSatish Balay col = in[j] - cstart_orig; 22657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 227f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22957b952d6SSatish Balay } 2303a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 231a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 232a8c6a408SBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 233639f9d9dSBarry Smith #endif 23457b952d6SSatish Balay else { 23557b952d6SSatish Balay if (mat->was_assembled) { 236905e6a2fSBarry Smith if (!baij->colmap) { 237905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 238905e6a2fSBarry Smith } 239905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 24057b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24157b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 24257b952d6SSatish Balay col = in[j]; 2439bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2449bf004c3SSatish Balay B = baij->B; 2459bf004c3SSatish Balay b = (Mat_SeqBAIJ *) (B)->data; 2469bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2479bf004c3SSatish Balay ba=b->a; 24857b952d6SSatish Balay } 249d64ed03dSBarry Smith } else col = in[j]; 25057b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 251ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 252ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25357b952d6SSatish Balay } 25457b952d6SSatish Balay } 255d64ed03dSBarry Smith } else { 25690f02eecSBarry Smith if (roworiented && !baij->donotstash) { 25757b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 258d64ed03dSBarry Smith } else { 25990f02eecSBarry Smith if (!baij->donotstash) { 26057b952d6SSatish Balay row = im[i]; 26157b952d6SSatish Balay for ( j=0; j<n; j++ ) { 26257b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 26357b952d6SSatish Balay } 26457b952d6SSatish Balay } 26557b952d6SSatish Balay } 26657b952d6SSatish Balay } 26790f02eecSBarry Smith } 2683a40ed3dSBarry Smith PetscFunctionReturn(0); 26957b952d6SSatish Balay } 27057b952d6SSatish Balay 271ab26458aSBarry Smith extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 272ab26458aSBarry Smith #undef __FUNC__ 273ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 274ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 275ab26458aSBarry Smith { 276ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 27730793edcSSatish Balay Scalar *value,*barray=baij->barray; 278abef11f7SSatish Balay int ierr,i,j,ii,jj,row,col,k,l; 279ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 280ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 281ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 282ab26458aSBarry Smith 28330793edcSSatish Balay if(!barray) { 28447513183SBarry Smith baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(barray); 28530793edcSSatish Balay } 28630793edcSSatish Balay 287ab26458aSBarry Smith if (roworiented) { 288ab26458aSBarry Smith stepval = (n-1)*bs; 289ab26458aSBarry Smith } else { 290ab26458aSBarry Smith stepval = (m-1)*bs; 291ab26458aSBarry Smith } 292ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 2933a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 294a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 295a8c6a408SBarry Smith if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 296ab26458aSBarry Smith #endif 297ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 298ab26458aSBarry Smith row = im[i] - rstart; 299ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 30015b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30115b57d14SSatish Balay if ((roworiented) && (n == 1)) { 30215b57d14SSatish Balay barray = v + i*bs2; 30315b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 30415b57d14SSatish Balay barray = v + j*bs2; 30515b57d14SSatish Balay } else { /* Here a copy is required */ 306ab26458aSBarry Smith if (roworiented) { 307ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 308ab26458aSBarry Smith } else { 309ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 310abef11f7SSatish Balay } 31147513183SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 31247513183SBarry Smith for (jj=0; jj<bs; jj++ ) { 31330793edcSSatish Balay *barray++ = *value++; 31447513183SBarry Smith } 31547513183SBarry Smith } 31630793edcSSatish Balay barray -=bs2; 31715b57d14SSatish Balay } 318abef11f7SSatish Balay 319abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 320abef11f7SSatish Balay col = in[j] - cstart; 32130793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 322ab26458aSBarry Smith } 3233a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 324a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 325a8c6a408SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");} 326ab26458aSBarry Smith #endif 327ab26458aSBarry Smith else { 328ab26458aSBarry Smith if (mat->was_assembled) { 329ab26458aSBarry Smith if (!baij->colmap) { 330ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 331ab26458aSBarry Smith } 332a5eb4965SSatish Balay 3333a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 334a8c6a408SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");} 335a5eb4965SSatish Balay #endif 336a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 337ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 338ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 339ab26458aSBarry Smith col = in[j]; 340ab26458aSBarry Smith } 341ab26458aSBarry Smith } 342ab26458aSBarry Smith else col = in[j]; 34330793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 344ab26458aSBarry Smith } 345ab26458aSBarry Smith } 346d64ed03dSBarry Smith } else { 347ab26458aSBarry Smith if (!baij->donotstash) { 348ab26458aSBarry Smith if (roworiented ) { 349abef11f7SSatish Balay row = im[i]*bs; 350abef11f7SSatish Balay value = v + i*(stepval+bs)*bs; 351abef11f7SSatish Balay for ( j=0; j<bs; j++,row++ ) { 352abef11f7SSatish Balay for ( k=0; k<n; k++ ) { 353abef11f7SSatish Balay for ( col=in[k]*bs,l=0; l<bs; l++,col++) { 354abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 355abef11f7SSatish Balay } 356ab26458aSBarry Smith } 357ab26458aSBarry Smith } 358d64ed03dSBarry Smith } else { 359ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 360abef11f7SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 361abef11f7SSatish Balay col = in[j]*bs; 362abef11f7SSatish Balay for ( k=0; k<bs; k++,col++,value+=stepval) { 363abef11f7SSatish Balay for ( row = im[i]*bs,l=0; l<bs; l++,row++) { 364abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 365ab26458aSBarry Smith } 366ab26458aSBarry Smith } 367ab26458aSBarry Smith } 368abef11f7SSatish Balay } 369abef11f7SSatish Balay } 370ab26458aSBarry Smith } 371ab26458aSBarry Smith } 3723a40ed3dSBarry Smith PetscFunctionReturn(0); 373ab26458aSBarry Smith } 3740bdbc534SSatish Balay #include <math.h> 3750bdbc534SSatish Balay #define HASH_KEY 0.6180339887 376c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 377c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 378c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 3795615d1e5SSatish Balay #undef __FUNC__ 3800bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT" 3810bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 3820bdbc534SSatish Balay { 3830bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3840bdbc534SSatish Balay int ierr,i,j,row,col; 3850bdbc534SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 386c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 387c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 388c2760754SSatish Balay double tmp; 389b9e4cc15SSatish Balay Scalar ** HD = baij->hd,value; 3904a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g) 3914a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3924a15367fSSatish Balay #endif 3930bdbc534SSatish Balay 3940bdbc534SSatish Balay PetscFunctionBegin; 3950bdbc534SSatish Balay 3960bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 3970bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g) 3980bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 3990bdbc534SSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4000bdbc534SSatish Balay #endif 4010bdbc534SSatish Balay row = im[i]; 402c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4030bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4040bdbc534SSatish Balay col = in[j]; 4050bdbc534SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 4060bdbc534SSatish Balay /* Look up into the Hash Table */ 407c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 408c2760754SSatish Balay h1 = HASH(size,key,tmp); 4090bdbc534SSatish Balay 410c2760754SSatish Balay 411c2760754SSatish Balay idx = h1; 412187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 413187ce0cbSSatish Balay insert_ct++; 414187ce0cbSSatish Balay total_ct++; 415187ce0cbSSatish Balay if (HT[idx] != key) { 416187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 417187ce0cbSSatish Balay if (idx == size) { 418187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 419187ce0cbSSatish Balay if (idx == h1) { 420187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 421187ce0cbSSatish Balay } 422187ce0cbSSatish Balay } 423187ce0cbSSatish Balay } 424187ce0cbSSatish Balay #else 425c2760754SSatish Balay if (HT[idx] != key) { 426c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 427c2760754SSatish Balay if (idx == size) { 428c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 429c2760754SSatish Balay if (idx == h1) { 430c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 431c2760754SSatish Balay } 432c2760754SSatish Balay } 433c2760754SSatish Balay } 434187ce0cbSSatish Balay #endif 435c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 436c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 437c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4380bdbc534SSatish Balay } 4390bdbc534SSatish Balay } else { 4400bdbc534SSatish Balay if (roworiented && !baij->donotstash) { 4410bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 4420bdbc534SSatish Balay } else { 4430bdbc534SSatish Balay if (!baij->donotstash) { 4440bdbc534SSatish Balay row = im[i]; 4450bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4460bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 4470bdbc534SSatish Balay } 4480bdbc534SSatish Balay } 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 452187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 453187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 454187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 455187ce0cbSSatish Balay #endif 4560bdbc534SSatish Balay PetscFunctionReturn(0); 4570bdbc534SSatish Balay } 4580bdbc534SSatish Balay 4590bdbc534SSatish Balay #undef __FUNC__ 4600bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT" 4610bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4620bdbc534SSatish Balay { 4630bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 4640bdbc534SSatish Balay int ierr,i,j,ii,jj,row,col,k,l; 4650bdbc534SSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 466b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 467c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 468c2760754SSatish Balay double tmp; 469187ce0cbSSatish Balay Scalar ** HD = baij->hd,*value,*v_t,*baij_a; 4704a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g) 4714a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4724a15367fSSatish Balay #endif 4730bdbc534SSatish Balay 474d0a41580SSatish Balay PetscFunctionBegin; 475d0a41580SSatish Balay 4760bdbc534SSatish Balay if (roworiented) { 4770bdbc534SSatish Balay stepval = (n-1)*bs; 4780bdbc534SSatish Balay } else { 4790bdbc534SSatish Balay stepval = (m-1)*bs; 4800bdbc534SSatish Balay } 4810bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 4820bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g) 4830bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 4840bdbc534SSatish Balay if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4850bdbc534SSatish Balay #endif 4860bdbc534SSatish Balay row = im[i]; 487187ce0cbSSatish Balay v_t = v + i*bs2; 488c2760754SSatish Balay if (row >= rstart && row < rend) { 4890bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4900bdbc534SSatish Balay col = in[j]; 4910bdbc534SSatish Balay 4920bdbc534SSatish Balay /* Look up into the Hash Table */ 493c2760754SSatish Balay key = row*Nbs+col+1; 494c2760754SSatish Balay h1 = HASH(size,key,tmp); 4950bdbc534SSatish Balay 496c2760754SSatish Balay idx = h1; 497187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 498187ce0cbSSatish Balay total_ct++; 499187ce0cbSSatish Balay insert_ct++; 500187ce0cbSSatish Balay if (HT[idx] != key) { 501187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 502187ce0cbSSatish Balay if (idx == size) { 503187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 504187ce0cbSSatish Balay if (idx == h1) { 505187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 506187ce0cbSSatish Balay } 507187ce0cbSSatish Balay } 508187ce0cbSSatish Balay } 509187ce0cbSSatish Balay #else 510c2760754SSatish Balay if (HT[idx] != key) { 511c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 512c2760754SSatish Balay if (idx == size) { 513c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 514c2760754SSatish Balay if (idx == h1) { 515c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 516c2760754SSatish Balay } 517c2760754SSatish Balay } 518c2760754SSatish Balay } 519187ce0cbSSatish Balay #endif 520c2760754SSatish Balay baij_a = HD[idx]; 5210bdbc534SSatish Balay if (roworiented) { 522c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 523187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 524187ce0cbSSatish Balay value = v_t; 525187ce0cbSSatish Balay v_t += bs; 526fef45726SSatish Balay if (addv == ADD_VALUES) { 527c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 528c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 529fef45726SSatish Balay baij_a[jj] += *value++; 530b4cc0f5aSSatish Balay } 531b4cc0f5aSSatish Balay } 532fef45726SSatish Balay } else { 533c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 534c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 535fef45726SSatish Balay baij_a[jj] = *value++; 536fef45726SSatish Balay } 537fef45726SSatish Balay } 538fef45726SSatish Balay } 5390bdbc534SSatish Balay } else { 5400bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 541fef45726SSatish Balay if (addv == ADD_VALUES) { 542b4cc0f5aSSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 5430bdbc534SSatish Balay for ( jj=0; jj<bs; jj++ ) { 544fef45726SSatish Balay baij_a[jj] += *value++; 545fef45726SSatish Balay } 546fef45726SSatish Balay } 547fef45726SSatish Balay } else { 548fef45726SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 549fef45726SSatish Balay for ( jj=0; jj<bs; jj++ ) { 550fef45726SSatish Balay baij_a[jj] = *value++; 551fef45726SSatish Balay } 552b4cc0f5aSSatish Balay } 5530bdbc534SSatish Balay } 5540bdbc534SSatish Balay } 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay } else { 5570bdbc534SSatish Balay if (!baij->donotstash) { 5580bdbc534SSatish Balay if (roworiented ) { 5590bdbc534SSatish Balay row = im[i]*bs; 5600bdbc534SSatish Balay value = v + i*(stepval+bs)*bs; 5610bdbc534SSatish Balay for ( j=0; j<bs; j++,row++ ) { 5620bdbc534SSatish Balay for ( k=0; k<n; k++ ) { 5630bdbc534SSatish Balay for ( col=in[k]*bs,l=0; l<bs; l++,col++) { 5640bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 5650bdbc534SSatish Balay } 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } else { 5690bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 5700bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 5710bdbc534SSatish Balay col = in[j]*bs; 5720bdbc534SSatish Balay for ( k=0; k<bs; k++,col++,value+=stepval) { 5730bdbc534SSatish Balay for ( row = im[i]*bs,l=0; l<bs; l++,row++) { 5740bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 5750bdbc534SSatish Balay } 5760bdbc534SSatish Balay } 5770bdbc534SSatish Balay } 5780bdbc534SSatish Balay } 5790bdbc534SSatish Balay } 5800bdbc534SSatish Balay } 5810bdbc534SSatish Balay } 582187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 583187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 584187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 585187ce0cbSSatish Balay #endif 5860bdbc534SSatish Balay PetscFunctionReturn(0); 5870bdbc534SSatish Balay } 588133cdb44SSatish Balay 5890bdbc534SSatish Balay #undef __FUNC__ 5905615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 591ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 592d6de1c52SSatish Balay { 593d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 594d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 595d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 596d6de1c52SSatish Balay 597133cdb44SSatish Balay PetscFunctionBegin; 598d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 599a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 600a8c6a408SBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 601d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 602d6de1c52SSatish Balay row = idxm[i] - bsrstart; 603d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 604a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 605a8c6a408SBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 606d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 607d6de1c52SSatish Balay col = idxn[j] - bscstart; 60898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 609d64ed03dSBarry Smith } else { 610905e6a2fSBarry Smith if (!baij->colmap) { 611905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 612905e6a2fSBarry Smith } 613e60e1c95SSatish Balay if((baij->colmap[idxn[j]/bs]-1 < 0) || 614dcb20de4SSatish Balay (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 615d9d09a02SSatish Balay else { 616dcb20de4SSatish Balay col = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs; 61798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 618d6de1c52SSatish Balay } 619d6de1c52SSatish Balay } 620d6de1c52SSatish Balay } 621d64ed03dSBarry Smith } else { 622a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 623d6de1c52SSatish Balay } 624d6de1c52SSatish Balay } 6253a40ed3dSBarry Smith PetscFunctionReturn(0); 626d6de1c52SSatish Balay } 627d6de1c52SSatish Balay 6285615d1e5SSatish Balay #undef __FUNC__ 6295615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 630ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 631d6de1c52SSatish Balay { 632d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 633d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 634acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 635d6de1c52SSatish Balay double sum = 0.0; 636d6de1c52SSatish Balay Scalar *v; 637d6de1c52SSatish Balay 638d64ed03dSBarry Smith PetscFunctionBegin; 639d6de1c52SSatish Balay if (baij->size == 1) { 640d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 641d6de1c52SSatish Balay } else { 642d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 643d6de1c52SSatish Balay v = amat->a; 644d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 6453a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 646*e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 647d6de1c52SSatish Balay #else 648d6de1c52SSatish Balay sum += (*v)*(*v); v++; 649d6de1c52SSatish Balay #endif 650d6de1c52SSatish Balay } 651d6de1c52SSatish Balay v = bmat->a; 652d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 6533a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 654*e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 655d6de1c52SSatish Balay #else 656d6de1c52SSatish Balay sum += (*v)*(*v); v++; 657d6de1c52SSatish Balay #endif 658d6de1c52SSatish Balay } 659ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 660d6de1c52SSatish Balay *norm = sqrt(*norm); 661d64ed03dSBarry Smith } else { 662e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 663d6de1c52SSatish Balay } 664d64ed03dSBarry Smith } 6653a40ed3dSBarry Smith PetscFunctionReturn(0); 666d6de1c52SSatish Balay } 66757b952d6SSatish Balay 6685615d1e5SSatish Balay #undef __FUNC__ 6695615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 670ec1ea8d8SLois Curfman McInnes int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 67157b952d6SSatish Balay { 67257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 67357b952d6SSatish Balay MPI_Comm comm = mat->comm; 67457b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 67557b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 67657b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 67757b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 67857b952d6SSatish Balay InsertMode addv; 67957b952d6SSatish Balay Scalar *rvalues,*svalues; 68057b952d6SSatish Balay 681d64ed03dSBarry Smith PetscFunctionBegin; 682570da906SBarry Smith if (baij->donotstash) { 683570da906SBarry Smith baij->svalues = 0; baij->rvalues = 0; 684570da906SBarry Smith baij->nsends = 0; baij->nrecvs = 0; 685570da906SBarry Smith baij->send_waits = 0; baij->recv_waits = 0; 686570da906SBarry Smith baij->rmax = 0; 687570da906SBarry Smith PetscFunctionReturn(0); 688570da906SBarry Smith } 689570da906SBarry Smith 69057b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 691ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 69257b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 693a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 69457b952d6SSatish Balay } 695e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 69657b952d6SSatish Balay 69757b952d6SSatish Balay /* first count number of contributors to each processor */ 69857b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 69957b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 70057b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 70157b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 70257b952d6SSatish Balay idx = baij->stash.idx[i]; 70357b952d6SSatish Balay for ( j=0; j<size; j++ ) { 70457b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 70557b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 70657b952d6SSatish Balay } 70757b952d6SSatish Balay } 70857b952d6SSatish Balay } 70957b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 71057b952d6SSatish Balay 71157b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 71257b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 713ca161407SBarry Smith ierr = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 71457b952d6SSatish Balay nreceives = work[rank]; 715ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 71657b952d6SSatish Balay nmax = work[rank]; 71757b952d6SSatish Balay PetscFree(work); 71857b952d6SSatish Balay 71957b952d6SSatish Balay /* post receives: 72057b952d6SSatish Balay 1) each message will consist of ordered pairs 72157b952d6SSatish Balay (global index,value) we store the global index as a double 72257b952d6SSatish Balay to simplify the message passing. 72357b952d6SSatish Balay 2) since we don't know how long each individual message is we 72457b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 72557b952d6SSatish Balay this is a lot of wasted space. 72657b952d6SSatish Balay 72757b952d6SSatish Balay 72857b952d6SSatish Balay This could be done better. 72957b952d6SSatish Balay */ 730f8abc2e8SBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues); 731f8abc2e8SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 73257b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 733ca161407SBarry Smith ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 73457b952d6SSatish Balay } 73557b952d6SSatish Balay 73657b952d6SSatish Balay /* do sends: 73757b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 73857b952d6SSatish Balay the ith processor 73957b952d6SSatish Balay */ 74057b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 741d64ed03dSBarry Smith send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 74257b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 74357b952d6SSatish Balay starts[0] = 0; 74457b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 74557b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 74657b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 74757b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 74857b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 74957b952d6SSatish Balay } 75057b952d6SSatish Balay PetscFree(owner); 75157b952d6SSatish Balay starts[0] = 0; 75257b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 75357b952d6SSatish Balay count = 0; 75457b952d6SSatish Balay for ( i=0; i<size; i++ ) { 75557b952d6SSatish Balay if (procs[i]) { 756ca161407SBarry Smith ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 75757b952d6SSatish Balay } 75857b952d6SSatish Balay } 75957b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 76057b952d6SSatish Balay 76157b952d6SSatish Balay /* Free cache space */ 76210a665d1SBarry Smith PLogInfo(baij->A,"MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",baij->stash.n); 76357b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 76457b952d6SSatish Balay 76557b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 76657b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 76757b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 76857b952d6SSatish Balay baij->rmax = nmax; 76957b952d6SSatish Balay 7703a40ed3dSBarry Smith PetscFunctionReturn(0); 77157b952d6SSatish Balay } 772bd7f49f5SSatish Balay 773fef45726SSatish Balay /* 774fef45726SSatish Balay Creates the hash table, and sets the table 775fef45726SSatish Balay This table is created only once. 776fef45726SSatish Balay If new entried need to be added to the matrix 777fef45726SSatish Balay then the hash table has to be destroyed and 778fef45726SSatish Balay recreated. 779fef45726SSatish Balay */ 780fef45726SSatish Balay #undef __FUNC__ 781fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private" 782d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor) 783596b8d2eSBarry Smith { 784596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 785596b8d2eSBarry Smith Mat A = baij->A, B=baij->B; 786596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data; 7870bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7884a15367fSSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart; 789187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 790fef45726SSatish Balay int *HT,key; 7910bdbc534SSatish Balay Scalar **HD; 792c2760754SSatish Balay double tmp; 7934a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g) 7944a15367fSSatish Balay int ct=0,max=0; 7954a15367fSSatish Balay #endif 796fef45726SSatish Balay 797d64ed03dSBarry Smith PetscFunctionBegin; 7980bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 7990bdbc534SSatish Balay size = baij->ht_size; 800fef45726SSatish Balay 8010bdbc534SSatish Balay if (baij->ht) { 8020bdbc534SSatish Balay PetscFunctionReturn(0); 803596b8d2eSBarry Smith } 8040bdbc534SSatish Balay 805fef45726SSatish Balay /* Allocate Memory for Hash Table */ 806b9e4cc15SSatish Balay baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1); CHKPTRQ(baij->hd); 807b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 808b9e4cc15SSatish Balay HD = baij->hd; 809a07cd24cSSatish Balay HT = baij->ht; 810b9e4cc15SSatish Balay 811b9e4cc15SSatish Balay 812c2760754SSatish Balay PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*))); 8130bdbc534SSatish Balay 814596b8d2eSBarry Smith 815596b8d2eSBarry Smith /* Loop Over A */ 8160bdbc534SSatish Balay for ( i=0; i<a->mbs; i++ ) { 817596b8d2eSBarry Smith for ( j=ai[i]; j<ai[i+1]; j++ ) { 8180bdbc534SSatish Balay row = i+rstart; 8190bdbc534SSatish Balay col = aj[j]+cstart; 820596b8d2eSBarry Smith 821187ce0cbSSatish Balay key = row*Nbs + col + 1; 822c2760754SSatish Balay h1 = HASH(size,key,tmp); 8230bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 8240bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8250bdbc534SSatish Balay HT[(h1+k)%size] = key; 8260bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 827596b8d2eSBarry Smith break; 828187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 829187ce0cbSSatish Balay } else { 830187ce0cbSSatish Balay ct++; 831187ce0cbSSatish Balay #endif 832596b8d2eSBarry Smith } 833187ce0cbSSatish Balay } 834187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 835187ce0cbSSatish Balay if (k> max) max = k; 836187ce0cbSSatish Balay #endif 837596b8d2eSBarry Smith } 838596b8d2eSBarry Smith } 839596b8d2eSBarry Smith /* Loop Over B */ 8400bdbc534SSatish Balay for ( i=0; i<b->mbs; i++ ) { 841596b8d2eSBarry Smith for ( j=bi[i]; j<bi[i+1]; j++ ) { 8420bdbc534SSatish Balay row = i+rstart; 8430bdbc534SSatish Balay col = garray[bj[j]]; 844187ce0cbSSatish Balay key = row*Nbs + col + 1; 845c2760754SSatish Balay h1 = HASH(size,key,tmp); 8460bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 8470bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8480bdbc534SSatish Balay HT[(h1+k)%size] = key; 8490bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 850596b8d2eSBarry Smith break; 851187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 852187ce0cbSSatish Balay } else { 853187ce0cbSSatish Balay ct++; 854187ce0cbSSatish Balay #endif 855596b8d2eSBarry Smith } 856187ce0cbSSatish Balay } 857187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 858187ce0cbSSatish Balay if (k> max) max = k; 859187ce0cbSSatish Balay #endif 860596b8d2eSBarry Smith } 861596b8d2eSBarry Smith } 862596b8d2eSBarry Smith 863596b8d2eSBarry Smith /* Print Summary */ 864187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 865c2760754SSatish Balay for ( i=0,j=0; i<size; i++) 866596b8d2eSBarry Smith if (HT[i]) {j++;} 867187ce0cbSSatish Balay PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n", 868187ce0cbSSatish Balay (j== 0)? 0.0:((double)(ct+j))/j,max); 869187ce0cbSSatish Balay #endif 8703a40ed3dSBarry Smith PetscFunctionReturn(0); 871596b8d2eSBarry Smith } 87257b952d6SSatish Balay 8735615d1e5SSatish Balay #undef __FUNC__ 8745615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 875ec1ea8d8SLois Curfman McInnes int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 87657b952d6SSatish Balay { 87757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 87857b952d6SSatish Balay MPI_Status *send_status,recv_status; 87957b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 880b7029e64SSatish Balay int bs=baij->bs,row,col,other_disassembled; 88157b952d6SSatish Balay Scalar *values,val; 882e0fa3b82SLois Curfman McInnes InsertMode addv = mat->insertmode; 88357b952d6SSatish Balay 884d64ed03dSBarry Smith PetscFunctionBegin; 88557b952d6SSatish Balay /* wait on receives */ 88657b952d6SSatish Balay while (count) { 887ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 88857b952d6SSatish Balay /* unpack receives into our local space */ 88957b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 890ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr); 89157b952d6SSatish Balay n = n/3; 89257b952d6SSatish Balay for ( i=0; i<n; i++ ) { 89357b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 89457b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 89557b952d6SSatish Balay val = values[3*i+2]; 89657b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 89757b952d6SSatish Balay col -= baij->cstart*bs; 8986fd7127cSSatish Balay ierr = MatSetValues(baij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr) 899d64ed03dSBarry Smith } else { 90057b952d6SSatish Balay if (mat->was_assembled) { 901905e6a2fSBarry Smith if (!baij->colmap) { 902905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr); 903905e6a2fSBarry Smith } 904a5eb4965SSatish Balay col = (baij->colmap[col/bs]) - 1 + col%bs; 90557b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 90657b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 90757b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 90857b952d6SSatish Balay } 90957b952d6SSatish Balay } 9106fd7127cSSatish Balay ierr = MatSetValues(baij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr) 91157b952d6SSatish Balay } 91257b952d6SSatish Balay } 91357b952d6SSatish Balay count--; 91457b952d6SSatish Balay } 915570da906SBarry Smith if (baij->recv_waits) PetscFree(baij->recv_waits); 916570da906SBarry Smith if (baij->rvalues) PetscFree(baij->rvalues); 91757b952d6SSatish Balay 91857b952d6SSatish Balay /* wait on sends */ 91957b952d6SSatish Balay if (baij->nsends) { 920d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 921ca161407SBarry Smith ierr = MPI_Waitall(baij->nsends,baij->send_waits,send_status);CHKERRQ(ierr); 92257b952d6SSatish Balay PetscFree(send_status); 92357b952d6SSatish Balay } 924570da906SBarry Smith if (baij->send_waits) PetscFree(baij->send_waits); 925570da906SBarry Smith if (baij->svalues) PetscFree(baij->svalues); 92657b952d6SSatish Balay 92757b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 92857b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 92957b952d6SSatish Balay 93057b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 93157b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 9326e713f22SBarry Smith /* 9336e713f22SBarry Smith if nonzero structure of submatrix B cannot change then we know that 9346e713f22SBarry Smith no processor disassembled thus we can skip this stuff 9356e713f22SBarry Smith */ 9366e713f22SBarry Smith if (!((Mat_SeqBAIJ*) baij->B->data)->nonew) { 937ca161407SBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 93857b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 93957b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 94057b952d6SSatish Balay } 9416e713f22SBarry Smith } 94257b952d6SSatish Balay 9436d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 94457b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 94557b952d6SSatish Balay } 94657b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 94757b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 94857b952d6SSatish Balay 949187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 950187ce0cbSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 951187ce0cbSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n", 952187ce0cbSSatish Balay ((double)baij->ht_total_ct)/baij->ht_insert_ct); 953187ce0cbSSatish Balay baij->ht_total_ct = 0; 954187ce0cbSSatish Balay baij->ht_insert_ct = 0; 955187ce0cbSSatish Balay } 956187ce0cbSSatish Balay #endif 957133cdb44SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 958133cdb44SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact); CHKERRQ(ierr); 959f830108cSBarry Smith mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 960f830108cSBarry Smith mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 961bd7f49f5SSatish Balay } 962187ce0cbSSatish Balay 96357b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 9643a40ed3dSBarry Smith PetscFunctionReturn(0); 96557b952d6SSatish Balay } 96657b952d6SSatish Balay 9675615d1e5SSatish Balay #undef __FUNC__ 9685615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 96957b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 97057b952d6SSatish Balay { 97157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 97257b952d6SSatish Balay int ierr; 97357b952d6SSatish Balay 974d64ed03dSBarry Smith PetscFunctionBegin; 97557b952d6SSatish Balay if (baij->size == 1) { 97657b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 977a8c6a408SBarry Smith } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 9783a40ed3dSBarry Smith PetscFunctionReturn(0); 97957b952d6SSatish Balay } 98057b952d6SSatish Balay 9815615d1e5SSatish Balay #undef __FUNC__ 9825615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab" 98357b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 98457b952d6SSatish Balay { 98557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 986cee3aa6bSSatish Balay int ierr, format,rank,bs = baij->bs; 98757b952d6SSatish Balay FILE *fd; 98857b952d6SSatish Balay ViewerType vtype; 98957b952d6SSatish Balay 990d64ed03dSBarry Smith PetscFunctionBegin; 99157b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 99257b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 99357b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 994639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 9954e220ebcSLois Curfman McInnes MatInfo info; 99657b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 99757b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 9984e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 99957b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 100057b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 10014e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 10024e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 10034e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->A,MAT_LOCAL,&info); 10044e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 10054e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->B,MAT_LOCAL,&info); 10064e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 100757b952d6SSatish Balay fflush(fd); 100857b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 100957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 10103a40ed3dSBarry Smith PetscFunctionReturn(0); 1011d64ed03dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 1012bcc3fcf6SBarry Smith PetscPrintf(mat->comm," block size is %d\n",bs); 10133a40ed3dSBarry Smith PetscFunctionReturn(0); 101457b952d6SSatish Balay } 101557b952d6SSatish Balay } 101657b952d6SSatish Balay 101757b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 101857b952d6SSatish Balay Draw draw; 101957b952d6SSatish Balay PetscTruth isnull; 102057b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 10213a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 102257b952d6SSatish Balay } 102357b952d6SSatish Balay 102457b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 102557b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 102657b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 102757b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 102857b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 102957b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 103057b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 103157b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 103257b952d6SSatish Balay fflush(fd); 103357b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 1034d64ed03dSBarry Smith } else { 103557b952d6SSatish Balay int size = baij->size; 103657b952d6SSatish Balay rank = baij->rank; 103757b952d6SSatish Balay if (size == 1) { 103857b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 1039d64ed03dSBarry Smith } else { 104057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 104157b952d6SSatish Balay Mat A; 104257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 104340011551SBarry Smith int M = baij->M, N = baij->N,*ai,*aj,col,i,j,k,*rvals; 104457b952d6SSatish Balay int mbs=baij->mbs; 104557b952d6SSatish Balay Scalar *a; 104657b952d6SSatish Balay 104757b952d6SSatish Balay if (!rank) { 104855843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 1049d64ed03dSBarry Smith } else { 105055843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 105157b952d6SSatish Balay } 105257b952d6SSatish Balay PLogObjectParent(mat,A); 105357b952d6SSatish Balay 105457b952d6SSatish Balay /* copy over the A part */ 105557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 105657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 105757b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 105857b952d6SSatish Balay 105957b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 106057b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 106157b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 106257b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 106357b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 106457b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1065cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1066cee3aa6bSSatish Balay col++; a += bs; 106757b952d6SSatish Balay } 106857b952d6SSatish Balay } 106957b952d6SSatish Balay } 107057b952d6SSatish Balay /* copy over the B part */ 107157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 107257b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 107357b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 107457b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 107557b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 107657b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 107757b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 107857b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1079cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1080cee3aa6bSSatish Balay col++; a += bs; 108157b952d6SSatish Balay } 108257b952d6SSatish Balay } 108357b952d6SSatish Balay } 108457b952d6SSatish Balay PetscFree(rvals); 10856d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 10866d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 108755843e3eSBarry Smith /* 108855843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 108955843e3eSBarry Smith synchronized across all processors that share the Draw object 109055843e3eSBarry Smith */ 109155843e3eSBarry Smith if (!rank || vtype == DRAW_VIEWER) { 109257b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 109357b952d6SSatish Balay } 109457b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 109557b952d6SSatish Balay } 109657b952d6SSatish Balay } 10973a40ed3dSBarry Smith PetscFunctionReturn(0); 109857b952d6SSatish Balay } 109957b952d6SSatish Balay 110057b952d6SSatish Balay 110157b952d6SSatish Balay 11025615d1e5SSatish Balay #undef __FUNC__ 11035615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 1104e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer) 110557b952d6SSatish Balay { 110657b952d6SSatish Balay int ierr; 110757b952d6SSatish Balay ViewerType vtype; 110857b952d6SSatish Balay 1109d64ed03dSBarry Smith PetscFunctionBegin; 111057b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 111157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 111257b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 111357b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 11143a40ed3dSBarry Smith } else if (vtype == BINARY_FILE_VIEWER) { 11153a40ed3dSBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 11165cd90555SBarry Smith } else { 11175cd90555SBarry Smith SETERRQ(1,1,"Viewer type not supported by PETSc object"); 111857b952d6SSatish Balay } 11193a40ed3dSBarry Smith PetscFunctionReturn(0); 112057b952d6SSatish Balay } 112157b952d6SSatish Balay 11225615d1e5SSatish Balay #undef __FUNC__ 11235615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 1124e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 112579bdfe76SSatish Balay { 112679bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 112779bdfe76SSatish Balay int ierr; 112879bdfe76SSatish Balay 1129d64ed03dSBarry Smith PetscFunctionBegin; 113098dd23e9SBarry Smith if (--mat->refct > 0) PetscFunctionReturn(0); 113198dd23e9SBarry Smith 113298dd23e9SBarry Smith if (mat->mapping) { 113398dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 113498dd23e9SBarry Smith } 113598dd23e9SBarry Smith if (mat->bmapping) { 113698dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->bmapping); CHKERRQ(ierr); 113798dd23e9SBarry Smith } 11383a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 1139e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",baij->M,baij->N); 114079bdfe76SSatish Balay #endif 114179bdfe76SSatish Balay 114283e2fdc7SBarry Smith ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 114379bdfe76SSatish Balay PetscFree(baij->rowners); 114479bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 114579bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 114679bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 114779bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 114879bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 114979bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 115079bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 115130793edcSSatish Balay if (baij->barray) PetscFree(baij->barray); 1152b9e4cc15SSatish Balay if (baij->hd) PetscFree(baij->hd); 115379bdfe76SSatish Balay PetscFree(baij); 115479bdfe76SSatish Balay PLogObjectDestroy(mat); 115579bdfe76SSatish Balay PetscHeaderDestroy(mat); 11563a40ed3dSBarry Smith PetscFunctionReturn(0); 115779bdfe76SSatish Balay } 115879bdfe76SSatish Balay 11595615d1e5SSatish Balay #undef __FUNC__ 11605615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 1161ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1162cee3aa6bSSatish Balay { 1163cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 116447b4a8eaSLois Curfman McInnes int ierr, nt; 1165cee3aa6bSSatish Balay 1166d64ed03dSBarry Smith PetscFunctionBegin; 1167e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 116847b4a8eaSLois Curfman McInnes if (nt != a->n) { 1169a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 117047b4a8eaSLois Curfman McInnes } 1171e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 117247b4a8eaSLois Curfman McInnes if (nt != a->m) { 1173a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 117447b4a8eaSLois Curfman McInnes } 117543a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1176f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy); CHKERRQ(ierr); 117743a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1178f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 117943a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 11803a40ed3dSBarry Smith PetscFunctionReturn(0); 1181cee3aa6bSSatish Balay } 1182cee3aa6bSSatish Balay 11835615d1e5SSatish Balay #undef __FUNC__ 11845615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 1185ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1186cee3aa6bSSatish Balay { 1187cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1188cee3aa6bSSatish Balay int ierr; 1189d64ed03dSBarry Smith 1190d64ed03dSBarry Smith PetscFunctionBegin; 119143a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1192f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 119343a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1194f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 11953a40ed3dSBarry Smith PetscFunctionReturn(0); 1196cee3aa6bSSatish Balay } 1197cee3aa6bSSatish Balay 11985615d1e5SSatish Balay #undef __FUNC__ 11995615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 1200ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 1201cee3aa6bSSatish Balay { 1202cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1203cee3aa6bSSatish Balay int ierr; 1204cee3aa6bSSatish Balay 1205d64ed03dSBarry Smith PetscFunctionBegin; 1206cee3aa6bSSatish Balay /* do nondiagonal part */ 1207f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 1208cee3aa6bSSatish Balay /* send it on its way */ 1209537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1210cee3aa6bSSatish Balay /* do local part */ 1211f830108cSBarry Smith ierr = (*a->A->ops->multtrans)(a->A,xx,yy); CHKERRQ(ierr); 1212cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1213cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1214cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1215639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 12163a40ed3dSBarry Smith PetscFunctionReturn(0); 1217cee3aa6bSSatish Balay } 1218cee3aa6bSSatish Balay 12195615d1e5SSatish Balay #undef __FUNC__ 12205615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 1221ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1222cee3aa6bSSatish Balay { 1223cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1224cee3aa6bSSatish Balay int ierr; 1225cee3aa6bSSatish Balay 1226d64ed03dSBarry Smith PetscFunctionBegin; 1227cee3aa6bSSatish Balay /* do nondiagonal part */ 1228f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 1229cee3aa6bSSatish Balay /* send it on its way */ 1230537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 1231cee3aa6bSSatish Balay /* do local part */ 1232f830108cSBarry Smith ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 1233cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1234cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1235cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1236537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 12373a40ed3dSBarry Smith PetscFunctionReturn(0); 1238cee3aa6bSSatish Balay } 1239cee3aa6bSSatish Balay 1240cee3aa6bSSatish Balay /* 1241cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1242cee3aa6bSSatish Balay diagonal block 1243cee3aa6bSSatish Balay */ 12445615d1e5SSatish Balay #undef __FUNC__ 12455615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 1246ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1247cee3aa6bSSatish Balay { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 12493a40ed3dSBarry Smith int ierr; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 12533a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256cee3aa6bSSatish Balay 12575615d1e5SSatish Balay #undef __FUNC__ 12585615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 1259ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1260cee3aa6bSSatish Balay { 1261cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1262cee3aa6bSSatish Balay int ierr; 1263d64ed03dSBarry Smith 1264d64ed03dSBarry Smith PetscFunctionBegin; 1265cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 1266cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 12673a40ed3dSBarry Smith PetscFunctionReturn(0); 1268cee3aa6bSSatish Balay } 1269026e39d0SSatish Balay 12705615d1e5SSatish Balay #undef __FUNC__ 12715615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 1272ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 127357b952d6SSatish Balay { 127457b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1275d64ed03dSBarry Smith 1276d64ed03dSBarry Smith PetscFunctionBegin; 1277bd7f49f5SSatish Balay if (m) *m = mat->M; 1278bd7f49f5SSatish Balay if (n) *n = mat->N; 12793a40ed3dSBarry Smith PetscFunctionReturn(0); 128057b952d6SSatish Balay } 128157b952d6SSatish Balay 12825615d1e5SSatish Balay #undef __FUNC__ 12835615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 1284ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 128557b952d6SSatish Balay { 128657b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1287d64ed03dSBarry Smith 1288d64ed03dSBarry Smith PetscFunctionBegin; 1289f830108cSBarry Smith *m = mat->m; *n = mat->n; 12903a40ed3dSBarry Smith PetscFunctionReturn(0); 129157b952d6SSatish Balay } 129257b952d6SSatish Balay 12935615d1e5SSatish Balay #undef __FUNC__ 12945615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 1295ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 129657b952d6SSatish Balay { 129757b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1298d64ed03dSBarry Smith 1299d64ed03dSBarry Smith PetscFunctionBegin; 130057b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 13013a40ed3dSBarry Smith PetscFunctionReturn(0); 130257b952d6SSatish Balay } 130357b952d6SSatish Balay 1304acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 1305acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 1306acdf5bf4SSatish Balay 13075615d1e5SSatish Balay #undef __FUNC__ 13085615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 1309acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1310acdf5bf4SSatish Balay { 1311acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1312acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1313acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 1314d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 1315d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 1316acdf5bf4SSatish Balay 1317d64ed03dSBarry Smith PetscFunctionBegin; 1318a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1319acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1320acdf5bf4SSatish Balay 1321acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1322acdf5bf4SSatish Balay /* 1323acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1324acdf5bf4SSatish Balay */ 1325acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 1326bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1327bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 1328acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1329acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1330acdf5bf4SSatish Balay } 1331acdf5bf4SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar))); 1332acdf5bf4SSatish Balay CHKPTRQ(mat->rowvalues); 1333acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 1334acdf5bf4SSatish Balay } 1335acdf5bf4SSatish Balay 1336a8c6a408SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1337d9d09a02SSatish Balay lrow = row - brstart; 1338acdf5bf4SSatish Balay 1339acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1340acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1341acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1342f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1343f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1344acdf5bf4SSatish Balay nztot = nzA + nzB; 1345acdf5bf4SSatish Balay 1346acdf5bf4SSatish Balay cmap = mat->garray; 1347acdf5bf4SSatish Balay if (v || idx) { 1348acdf5bf4SSatish Balay if (nztot) { 1349acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1350acdf5bf4SSatish Balay int imark = -1; 1351acdf5bf4SSatish Balay if (v) { 1352acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1353acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1354d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1355acdf5bf4SSatish Balay else break; 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay imark = i; 1358acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 1359acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1360acdf5bf4SSatish Balay } 1361acdf5bf4SSatish Balay if (idx) { 1362acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1363acdf5bf4SSatish Balay if (imark > -1) { 1364acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 1365bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1366acdf5bf4SSatish Balay } 1367acdf5bf4SSatish Balay } else { 1368acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1369d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1370d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1371acdf5bf4SSatish Balay else break; 1372acdf5bf4SSatish Balay } 1373acdf5bf4SSatish Balay imark = i; 1374acdf5bf4SSatish Balay } 1375d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 1376d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1377acdf5bf4SSatish Balay } 1378d64ed03dSBarry Smith } else { 1379d212a18eSSatish Balay if (idx) *idx = 0; 1380d212a18eSSatish Balay if (v) *v = 0; 1381d212a18eSSatish Balay } 1382acdf5bf4SSatish Balay } 1383acdf5bf4SSatish Balay *nz = nztot; 1384f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1385f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 13863a40ed3dSBarry Smith PetscFunctionReturn(0); 1387acdf5bf4SSatish Balay } 1388acdf5bf4SSatish Balay 13895615d1e5SSatish Balay #undef __FUNC__ 13905615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 1391acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1392acdf5bf4SSatish Balay { 1393acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1394d64ed03dSBarry Smith 1395d64ed03dSBarry Smith PetscFunctionBegin; 1396acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1397a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1398acdf5bf4SSatish Balay } 1399acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14003a40ed3dSBarry Smith PetscFunctionReturn(0); 1401acdf5bf4SSatish Balay } 1402acdf5bf4SSatish Balay 14035615d1e5SSatish Balay #undef __FUNC__ 14045615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 1405ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 14065a838052SSatish Balay { 14075a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1408d64ed03dSBarry Smith 1409d64ed03dSBarry Smith PetscFunctionBegin; 14105a838052SSatish Balay *bs = baij->bs; 14113a40ed3dSBarry Smith PetscFunctionReturn(0); 14125a838052SSatish Balay } 14135a838052SSatish Balay 14145615d1e5SSatish Balay #undef __FUNC__ 14155615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 1416ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 141758667388SSatish Balay { 141858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 141958667388SSatish Balay int ierr; 1420d64ed03dSBarry Smith 1421d64ed03dSBarry Smith PetscFunctionBegin; 142258667388SSatish Balay ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 142358667388SSatish Balay ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 14243a40ed3dSBarry Smith PetscFunctionReturn(0); 142558667388SSatish Balay } 14260ac07820SSatish Balay 14275615d1e5SSatish Balay #undef __FUNC__ 14285615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 1429ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14300ac07820SSatish Balay { 14314e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 14324e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14337d57db60SLois Curfman McInnes int ierr; 14347d57db60SLois Curfman McInnes double isend[5], irecv[5]; 14350ac07820SSatish Balay 1436d64ed03dSBarry Smith PetscFunctionBegin; 14374e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 14384e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 14394e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory; 14404e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 14414e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory; 14420ac07820SSatish Balay if (flag == MAT_LOCAL) { 14434e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14444e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14454e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14464e220ebcSLois Curfman McInnes info->memory = isend[3]; 14474e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14480ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1449f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 14504e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14514e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14524e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14534e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14544e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14550ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1456f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 14574e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14584e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14594e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14604e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14614e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14620ac07820SSatish Balay } 14635a5d4f66SBarry Smith info->rows_global = (double)a->M; 14645a5d4f66SBarry Smith info->columns_global = (double)a->N; 14655a5d4f66SBarry Smith info->rows_local = (double)a->m; 14665a5d4f66SBarry Smith info->columns_local = (double)a->N; 14674e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14684e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14694e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14703a40ed3dSBarry Smith PetscFunctionReturn(0); 14710ac07820SSatish Balay } 14720ac07820SSatish Balay 14735615d1e5SSatish Balay #undef __FUNC__ 14745615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 1475ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 147658667388SSatish Balay { 147758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 147858667388SSatish Balay 1479d64ed03dSBarry Smith PetscFunctionBegin; 148058667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 148158667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 14826da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1483c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 148496854ed6SLois Curfman McInnes op == MAT_NEW_NONZERO_ALLOCATION_ERROR || 1485c2653b3dSLois Curfman McInnes op == MAT_NEW_NONZERO_LOCATION_ERROR) { 1486b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 1487b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 1488b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1489aeafbbfcSLois Curfman McInnes a->roworiented = 1; 149058667388SSatish Balay MatSetOption(a->A,op); 149158667388SSatish Balay MatSetOption(a->B,op); 1492b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 14936da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 149458667388SSatish Balay op == MAT_SYMMETRIC || 149558667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1496b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 1497b51ba29fSSatish Balay op == MAT_USE_HASH_TABLE) 149858667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 149958667388SSatish Balay else if (op == MAT_COLUMN_ORIENTED) { 150058667388SSatish Balay a->roworiented = 0; 150158667388SSatish Balay MatSetOption(a->A,op); 150258667388SSatish Balay MatSetOption(a->B,op); 15032b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 150490f02eecSBarry Smith a->donotstash = 1; 1505d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 1506d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1507133cdb44SSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1508133cdb44SSatish Balay a->ht_flag = 1; 1509d64ed03dSBarry Smith } else { 1510d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1511d64ed03dSBarry Smith } 15123a40ed3dSBarry Smith PetscFunctionReturn(0); 151358667388SSatish Balay } 151458667388SSatish Balay 15155615d1e5SSatish Balay #undef __FUNC__ 15165615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 1517ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 15180ac07820SSatish Balay { 15190ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 15200ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15210ac07820SSatish Balay Mat B; 152240011551SBarry Smith int ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col; 15230ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 15240ac07820SSatish Balay Scalar *a; 15250ac07820SSatish Balay 1526d64ed03dSBarry Smith PetscFunctionBegin; 1527a8c6a408SBarry Smith if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 15280ac07820SSatish Balay ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 15290ac07820SSatish Balay CHKERRQ(ierr); 15300ac07820SSatish Balay 15310ac07820SSatish Balay /* copy over the A part */ 15320ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 15330ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15340ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 15350ac07820SSatish Balay 15360ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 15370ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15380ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15390ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15400ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15410ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15420ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15430ac07820SSatish Balay col++; a += bs; 15440ac07820SSatish Balay } 15450ac07820SSatish Balay } 15460ac07820SSatish Balay } 15470ac07820SSatish Balay /* copy over the B part */ 15480ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 15490ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15500ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 15510ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15520ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15530ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15540ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15550ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15560ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15570ac07820SSatish Balay col++; a += bs; 15580ac07820SSatish Balay } 15590ac07820SSatish Balay } 15600ac07820SSatish Balay } 15610ac07820SSatish Balay PetscFree(rvals); 15620ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 15630ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 15640ac07820SSatish Balay 15650ac07820SSatish Balay if (matout != PETSC_NULL) { 15660ac07820SSatish Balay *matout = B; 15670ac07820SSatish Balay } else { 1568f830108cSBarry Smith PetscOps *Abops; 1569f830108cSBarry Smith struct _MatOps *Aops; 1570f830108cSBarry Smith 15710ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 15720ac07820SSatish Balay PetscFree(baij->rowners); 15730ac07820SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 15740ac07820SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 15750ac07820SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 15760ac07820SSatish Balay if (baij->garray) PetscFree(baij->garray); 15770ac07820SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 15780ac07820SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 15790ac07820SSatish Balay PetscFree(baij); 1580f830108cSBarry Smith 1581f830108cSBarry Smith /* 1582f830108cSBarry Smith This is horrible, horrible code. We need to keep the 1583f830108cSBarry Smith A pointers for the bops and ops but copy everything 1584f830108cSBarry Smith else from C. 1585f830108cSBarry Smith */ 1586f830108cSBarry Smith Abops = A->bops; 1587f830108cSBarry Smith Aops = A->ops; 1588f09e8eb9SSatish Balay PetscMemcpy(A,B,sizeof(struct _p_Mat)); 1589f830108cSBarry Smith A->bops = Abops; 1590f830108cSBarry Smith A->ops = Aops; 1591f830108cSBarry Smith 15920ac07820SSatish Balay PetscHeaderDestroy(B); 15930ac07820SSatish Balay } 15943a40ed3dSBarry Smith PetscFunctionReturn(0); 15950ac07820SSatish Balay } 15960e95ebc0SSatish Balay 15975615d1e5SSatish Balay #undef __FUNC__ 15985615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 15990e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 16000e95ebc0SSatish Balay { 16010e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 16020e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 16030e95ebc0SSatish Balay int ierr,s1,s2,s3; 16040e95ebc0SSatish Balay 1605d64ed03dSBarry Smith PetscFunctionBegin; 16060e95ebc0SSatish Balay if (ll) { 16070e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr); 16080e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr); 1609a8c6a408SBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"non-conforming local sizes"); 16100e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr); 16110e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr); 16120e95ebc0SSatish Balay } 1613a8c6a408SBarry Smith if (rr) SETERRQ(PETSC_ERR_SUP,0,"not supported for right vector"); 16143a40ed3dSBarry Smith PetscFunctionReturn(0); 16150e95ebc0SSatish Balay } 16160e95ebc0SSatish Balay 16175615d1e5SSatish Balay #undef __FUNC__ 16185615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 1619ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 16200ac07820SSatish Balay { 16210ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 16220ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 1623a07cd24cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 16240ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16250ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1626a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16270ac07820SSatish Balay MPI_Comm comm = A->comm; 16280ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16290ac07820SSatish Balay MPI_Status recv_status,*send_status; 16300ac07820SSatish Balay IS istmp; 163172dacd9aSBarry Smith PetscTruth localdiag; 16320ac07820SSatish Balay 1633d64ed03dSBarry Smith PetscFunctionBegin; 16340ac07820SSatish Balay ierr = ISGetSize(is,&N); CHKERRQ(ierr); 16350ac07820SSatish Balay ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 16360ac07820SSatish Balay 16370ac07820SSatish Balay /* first count number of contributors to each processor */ 16380ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 16390ac07820SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 16400ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 16410ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16420ac07820SSatish Balay idx = rows[i]; 16430ac07820SSatish Balay found = 0; 16440ac07820SSatish Balay for ( j=0; j<size; j++ ) { 16450ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 16460ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 16470ac07820SSatish Balay } 16480ac07820SSatish Balay } 1649a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 16500ac07820SSatish Balay } 16510ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 16520ac07820SSatish Balay 16530ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 16540ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 1655ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 16560ac07820SSatish Balay nrecvs = work[rank]; 1657ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 16580ac07820SSatish Balay nmax = work[rank]; 16590ac07820SSatish Balay PetscFree(work); 16600ac07820SSatish Balay 16610ac07820SSatish Balay /* post receives: */ 1662d64ed03dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); CHKPTRQ(rvalues); 1663d64ed03dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 16640ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 1665ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16660ac07820SSatish Balay } 16670ac07820SSatish Balay 16680ac07820SSatish Balay /* do sends: 16690ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16700ac07820SSatish Balay the ith processor 16710ac07820SSatish Balay */ 16720ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 1673ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 16740ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 16750ac07820SSatish Balay starts[0] = 0; 16760ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16770ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16780ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16790ac07820SSatish Balay } 16800ac07820SSatish Balay ISRestoreIndices(is,&rows); 16810ac07820SSatish Balay 16820ac07820SSatish Balay starts[0] = 0; 16830ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16840ac07820SSatish Balay count = 0; 16850ac07820SSatish Balay for ( i=0; i<size; i++ ) { 16860ac07820SSatish Balay if (procs[i]) { 1687ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16880ac07820SSatish Balay } 16890ac07820SSatish Balay } 16900ac07820SSatish Balay PetscFree(starts); 16910ac07820SSatish Balay 16920ac07820SSatish Balay base = owners[rank]*bs; 16930ac07820SSatish Balay 16940ac07820SSatish Balay /* wait on receives */ 16950ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 16960ac07820SSatish Balay source = lens + nrecvs; 16970ac07820SSatish Balay count = nrecvs; slen = 0; 16980ac07820SSatish Balay while (count) { 1699ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17000ac07820SSatish Balay /* unpack receives into our local space */ 1701ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 17020ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17030ac07820SSatish Balay lens[imdex] = n; 17040ac07820SSatish Balay slen += n; 17050ac07820SSatish Balay count--; 17060ac07820SSatish Balay } 17070ac07820SSatish Balay PetscFree(recv_waits); 17080ac07820SSatish Balay 17090ac07820SSatish Balay /* move the data into the send scatter */ 17100ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 17110ac07820SSatish Balay count = 0; 17120ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 17130ac07820SSatish Balay values = rvalues + i*nmax; 17140ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 17150ac07820SSatish Balay lrows[count++] = values[j] - base; 17160ac07820SSatish Balay } 17170ac07820SSatish Balay } 17180ac07820SSatish Balay PetscFree(rvalues); PetscFree(lens); 17190ac07820SSatish Balay PetscFree(owner); PetscFree(nprocs); 17200ac07820SSatish Balay 17210ac07820SSatish Balay /* actually zap the local rows */ 1722029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 17230ac07820SSatish Balay PLogObjectParent(A,istmp); 1724a07cd24cSSatish Balay 172572dacd9aSBarry Smith /* 172672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 172772dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 172872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 172972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 173072dacd9aSBarry Smith 173172dacd9aSBarry Smith Contributed by: Mathew Knepley 173272dacd9aSBarry Smith */ 173372dacd9aSBarry Smith localdiag = PETSC_FALSE; 173472dacd9aSBarry Smith if (diag && (l->A->M == l->A->N)) { 173572dacd9aSBarry Smith localdiag = PETSC_TRUE; 173672dacd9aSBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 173772dacd9aSBarry Smith } else { 1738a07cd24cSSatish Balay ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr); 173972dacd9aSBarry Smith } 17400ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 17410ac07820SSatish Balay ierr = ISDestroy(istmp); CHKERRQ(ierr); 17420ac07820SSatish Balay 174372dacd9aSBarry Smith if (diag && (localdiag == PETSC_FALSE)) { 1744a07cd24cSSatish Balay for ( i = 0; i < slen; i++ ) { 1745a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1746a07cd24cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); CHKERRQ(ierr); 1747a07cd24cSSatish Balay } 1748a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1749a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1750a07cd24cSSatish Balay } 1751a07cd24cSSatish Balay PetscFree(lrows); 1752a07cd24cSSatish Balay 17530ac07820SSatish Balay /* wait on sends */ 17540ac07820SSatish Balay if (nsends) { 1755d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1756ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 17570ac07820SSatish Balay PetscFree(send_status); 17580ac07820SSatish Balay } 17590ac07820SSatish Balay PetscFree(send_waits); PetscFree(svalues); 17600ac07820SSatish Balay 17613a40ed3dSBarry Smith PetscFunctionReturn(0); 17620ac07820SSatish Balay } 176372dacd9aSBarry Smith 1764ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 17655615d1e5SSatish Balay #undef __FUNC__ 17665615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1767ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1768ba4ca20aSSatish Balay { 1769ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 177025fdafccSSatish Balay MPI_Comm comm = A->comm; 1771133cdb44SSatish Balay static int called = 0; 17723a40ed3dSBarry Smith int ierr; 1773ba4ca20aSSatish Balay 1774d64ed03dSBarry Smith PetscFunctionBegin; 17753a40ed3dSBarry Smith if (!a->rank) { 17763a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 177725fdafccSSatish Balay } 177825fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1779133cdb44SSatish Balay (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n"); 1780133cdb44SSatish Balay (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n"); 17813a40ed3dSBarry Smith PetscFunctionReturn(0); 1782ba4ca20aSSatish Balay } 17830ac07820SSatish Balay 17845615d1e5SSatish Balay #undef __FUNC__ 17855615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1786ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1787bb5a7306SBarry Smith { 1788bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1789bb5a7306SBarry Smith int ierr; 1790d64ed03dSBarry Smith 1791d64ed03dSBarry Smith PetscFunctionBegin; 1792bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 17933a40ed3dSBarry Smith PetscFunctionReturn(0); 1794bb5a7306SBarry Smith } 1795bb5a7306SBarry Smith 17960ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int); 17970ac07820SSatish Balay 179879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 179979bdfe76SSatish Balay static struct _MatOps MatOps = { 1800bd16c2feSSatish Balay MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ, 18014c50302cSBarry Smith MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 18024c50302cSBarry Smith 0,0,0,0, 18030ac07820SSatish Balay 0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ, 18040e95ebc0SSatish Balay 0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ, 180558667388SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ, 18064c50302cSBarry Smith MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0, 18074c50302cSBarry Smith 0,0,0,MatGetSize_MPIBAIJ, 18084c50302cSBarry Smith MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 180994a9d846SBarry Smith 0,0,MatConvertSameType_MPIBAIJ,0,0, 1810d212a18eSSatish Balay 0,0,0,MatGetSubMatrices_MPIBAIJ, 1811ba4ca20aSSatish Balay MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ, 1812bb5a7306SBarry Smith MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ, 1813ab26458aSBarry Smith 0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ,0,MatSetValuesBlocked_MPIBAIJ}; 181479bdfe76SSatish Balay 181579bdfe76SSatish Balay 18165615d1e5SSatish Balay #undef __FUNC__ 18175615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 181879bdfe76SSatish Balay /*@C 181979bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 182079bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 182179bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 182279bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 182379bdfe76SSatish Balay performance can be increased by more than a factor of 50. 182479bdfe76SSatish Balay 1825db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1826db81eaa0SLois Curfman McInnes 182779bdfe76SSatish Balay Input Parameters: 1828db81eaa0SLois Curfman McInnes + comm - MPI communicator 182979bdfe76SSatish Balay . bs - size of blockk 183079bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 183192e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 183292e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 183392e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 183492e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 183592e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 183679bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 183792e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 183879bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 183979bdfe76SSatish Balay submatrix (same for all local rows) 184092e8d321SLois Curfman McInnes . d_nzz - array containing the number of block nonzeros in the various block rows 184192e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 1842db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 184392e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 184479bdfe76SSatish Balay submatrix (same for all local rows). 1845db81eaa0SLois Curfman McInnes - o_nzz - array containing the number of nonzeros in the various block rows of the 184692e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 184792e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 184879bdfe76SSatish Balay 184979bdfe76SSatish Balay Output Parameter: 185079bdfe76SSatish Balay . A - the matrix 185179bdfe76SSatish Balay 1852db81eaa0SLois Curfman McInnes Options Database Keys: 1853db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 1854db81eaa0SLois Curfman McInnes block calculations (much slower) 1855db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 18563ffaccefSLois Curfman McInnes 1857b259b22eSLois Curfman McInnes Notes: 185879bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 185979bdfe76SSatish Balay (possibly both). 186079bdfe76SSatish Balay 186179bdfe76SSatish Balay Storage Information: 186279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 186379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 186479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 186579bdfe76SSatish Balay local matrix (a rectangular submatrix). 186679bdfe76SSatish Balay 186779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 186879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 186979bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 187079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 187179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 187279bdfe76SSatish Balay 187379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 187479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 187579bdfe76SSatish Balay 1876db81eaa0SLois Curfman McInnes .vb 1877db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 1878db81eaa0SLois Curfman McInnes ------------------- 1879db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 1880db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 1881db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 1882db81eaa0SLois Curfman McInnes ------------------- 1883db81eaa0SLois Curfman McInnes .ve 188479bdfe76SSatish Balay 188579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 188679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 188779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 188857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 188979bdfe76SSatish Balay 1890d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1891d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 189279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 189392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 189492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 18956da5968aSLois Curfman McInnes matrices. 189679bdfe76SSatish Balay 189792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 189879bdfe76SSatish Balay 1899db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIAIJ() 190079bdfe76SSatish Balay @*/ 190179bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 190279bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 190379bdfe76SSatish Balay { 190479bdfe76SSatish Balay Mat B; 190579bdfe76SSatish Balay Mat_MPIBAIJ *b; 1906133cdb44SSatish Balay int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size,flg; 190779bdfe76SSatish Balay 1908d64ed03dSBarry Smith PetscFunctionBegin; 1909a8c6a408SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 19103914022bSBarry Smith 19113914022bSBarry Smith MPI_Comm_size(comm,&size); 19123914022bSBarry Smith if (size == 1) { 19133914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 19143914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 19153914022bSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A); CHKERRQ(ierr); 19163a40ed3dSBarry Smith PetscFunctionReturn(0); 19173914022bSBarry Smith } 19183914022bSBarry Smith 191979bdfe76SSatish Balay *A = 0; 1920f830108cSBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,comm,MatDestroy,MatView); 192179bdfe76SSatish Balay PLogObjectCreate(B); 192279bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 192379bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 1924f830108cSBarry Smith PetscMemcpy(B->ops,&MatOps,sizeof(struct _MatOps)); 19254c50302cSBarry Smith 1926e1311b90SBarry Smith B->ops->destroy = MatDestroy_MPIBAIJ; 1927e1311b90SBarry Smith B->ops->view = MatView_MPIBAIJ; 192890f02eecSBarry Smith B->mapping = 0; 192979bdfe76SSatish Balay B->factor = 0; 193079bdfe76SSatish Balay B->assembled = PETSC_FALSE; 193179bdfe76SSatish Balay 1932e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 193379bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 193479bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 193579bdfe76SSatish Balay 1936d64ed03dSBarry Smith if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 1937a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1938d64ed03dSBarry Smith } 1939a8c6a408SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) { 1940a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 1941a8c6a408SBarry Smith } 1942a8c6a408SBarry Smith if ( N == PETSC_DECIDE && n == PETSC_DECIDE) { 1943a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified"); 1944a8c6a408SBarry Smith } 1945cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1946cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 194779bdfe76SSatish Balay 194879bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 194979bdfe76SSatish Balay work[0] = m; work[1] = n; 195079bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 1951ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 195279bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 195379bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 195479bdfe76SSatish Balay } 195579bdfe76SSatish Balay if (m == PETSC_DECIDE) { 195679bdfe76SSatish Balay Mbs = M/bs; 1957a8c6a408SBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 195879bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 195979bdfe76SSatish Balay m = mbs*bs; 196079bdfe76SSatish Balay } 196179bdfe76SSatish Balay if (n == PETSC_DECIDE) { 196279bdfe76SSatish Balay Nbs = N/bs; 1963a8c6a408SBarry Smith if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize"); 196479bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 196579bdfe76SSatish Balay n = nbs*bs; 196679bdfe76SSatish Balay } 1967a8c6a408SBarry Smith if (mbs*bs != m || nbs*bs != n) { 1968a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize"); 1969a8c6a408SBarry Smith } 197079bdfe76SSatish Balay 197179bdfe76SSatish Balay b->m = m; B->m = m; 197279bdfe76SSatish Balay b->n = n; B->n = n; 197379bdfe76SSatish Balay b->N = N; B->N = N; 197479bdfe76SSatish Balay b->M = M; B->M = M; 197579bdfe76SSatish Balay b->bs = bs; 197679bdfe76SSatish Balay b->bs2 = bs*bs; 197779bdfe76SSatish Balay b->mbs = mbs; 197879bdfe76SSatish Balay b->nbs = nbs; 197979bdfe76SSatish Balay b->Mbs = Mbs; 198079bdfe76SSatish Balay b->Nbs = Nbs; 198179bdfe76SSatish Balay 198279bdfe76SSatish Balay /* build local table of row and column ownerships */ 198379bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 1984f09e8eb9SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 19850ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 1986ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 198779bdfe76SSatish Balay b->rowners[0] = 0; 198879bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 198979bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 199079bdfe76SSatish Balay } 199179bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 199279bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 19934fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 19944fa0d573SSatish Balay b->rend_bs = b->rend * bs; 19954fa0d573SSatish Balay 1996ca161407SBarry Smith ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 199779bdfe76SSatish Balay b->cowners[0] = 0; 199879bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 199979bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 200079bdfe76SSatish Balay } 200179bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 200279bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 20034fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 20044fa0d573SSatish Balay b->cend_bs = b->cend * bs; 200579bdfe76SSatish Balay 2006a07cd24cSSatish Balay 200779bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 2008029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 200979bdfe76SSatish Balay PLogObjectParent(B,b->A); 201079bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 2011029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 201279bdfe76SSatish Balay PLogObjectParent(B,b->B); 201379bdfe76SSatish Balay 201479bdfe76SSatish Balay /* build cache for off array entries formed */ 201579bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 201690f02eecSBarry Smith b->donotstash = 0; 201779bdfe76SSatish Balay b->colmap = 0; 201879bdfe76SSatish Balay b->garray = 0; 201979bdfe76SSatish Balay b->roworiented = 1; 202079bdfe76SSatish Balay 202130793edcSSatish Balay /* stuff used in block assembly */ 202230793edcSSatish Balay b->barray = 0; 202330793edcSSatish Balay 202479bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 202579bdfe76SSatish Balay b->lvec = 0; 202679bdfe76SSatish Balay b->Mvctx = 0; 202779bdfe76SSatish Balay 202879bdfe76SSatish Balay /* stuff for MatGetRow() */ 202979bdfe76SSatish Balay b->rowindices = 0; 203079bdfe76SSatish Balay b->rowvalues = 0; 203179bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 203279bdfe76SSatish Balay 2033a07cd24cSSatish Balay /* hash table stuff */ 2034a07cd24cSSatish Balay b->ht = 0; 2035187ce0cbSSatish Balay b->hd = 0; 20360bdbc534SSatish Balay b->ht_size = 0; 2037133cdb44SSatish Balay b->ht_flag = 0; 203825fdafccSSatish Balay b->ht_fact = 0; 2039187ce0cbSSatish Balay b->ht_total_ct = 0; 2040187ce0cbSSatish Balay b->ht_insert_ct = 0; 2041a07cd24cSSatish Balay 204279bdfe76SSatish Balay *A = B; 2043133cdb44SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg); CHKERRQ(ierr); 2044133cdb44SSatish Balay if (flg) { 2045133cdb44SSatish Balay double fact = 1.39; 2046133cdb44SSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE); CHKERRQ(ierr); 2047133cdb44SSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,&flg); CHKERRQ(ierr); 2048133cdb44SSatish Balay if (fact <= 1.0) fact = 1.39; 2049133cdb44SSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact); CHKERRQ(ierr); 2050133cdb44SSatish Balay PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2051133cdb44SSatish Balay } 20523a40ed3dSBarry Smith PetscFunctionReturn(0); 205379bdfe76SSatish Balay } 2054026e39d0SSatish Balay 20555615d1e5SSatish Balay #undef __FUNC__ 20565615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ" 20570ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues) 20580ac07820SSatish Balay { 20590ac07820SSatish Balay Mat mat; 20600ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 20610ac07820SSatish Balay int ierr, len=0, flg; 20620ac07820SSatish Balay 2063d64ed03dSBarry Smith PetscFunctionBegin; 20640ac07820SSatish Balay *newmat = 0; 2065f830108cSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,matin->comm,MatDestroy,MatView); 20660ac07820SSatish Balay PLogObjectCreate(mat); 20670ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a); 2068f830108cSBarry Smith PetscMemcpy(mat->ops,&MatOps,sizeof(struct _MatOps)); 2069e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIBAIJ; 2070e1311b90SBarry Smith mat->ops->view = MatView_MPIBAIJ; 20710ac07820SSatish Balay mat->factor = matin->factor; 20720ac07820SSatish Balay mat->assembled = PETSC_TRUE; 20730ac07820SSatish Balay 20740ac07820SSatish Balay a->m = mat->m = oldmat->m; 20750ac07820SSatish Balay a->n = mat->n = oldmat->n; 20760ac07820SSatish Balay a->M = mat->M = oldmat->M; 20770ac07820SSatish Balay a->N = mat->N = oldmat->N; 20780ac07820SSatish Balay 20790ac07820SSatish Balay a->bs = oldmat->bs; 20800ac07820SSatish Balay a->bs2 = oldmat->bs2; 20810ac07820SSatish Balay a->mbs = oldmat->mbs; 20820ac07820SSatish Balay a->nbs = oldmat->nbs; 20830ac07820SSatish Balay a->Mbs = oldmat->Mbs; 20840ac07820SSatish Balay a->Nbs = oldmat->Nbs; 20850ac07820SSatish Balay 20860ac07820SSatish Balay a->rstart = oldmat->rstart; 20870ac07820SSatish Balay a->rend = oldmat->rend; 20880ac07820SSatish Balay a->cstart = oldmat->cstart; 20890ac07820SSatish Balay a->cend = oldmat->cend; 20900ac07820SSatish Balay a->size = oldmat->size; 20910ac07820SSatish Balay a->rank = oldmat->rank; 2092e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 20930ac07820SSatish Balay a->rowvalues = 0; 20940ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 209530793edcSSatish Balay a->barray = 0; 20960ac07820SSatish Balay 2097133cdb44SSatish Balay /* hash table stuff */ 2098133cdb44SSatish Balay a->ht = 0; 2099133cdb44SSatish Balay a->hd = 0; 2100133cdb44SSatish Balay a->ht_size = 0; 2101133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 210225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2103133cdb44SSatish Balay a->ht_total_ct = 0; 2104133cdb44SSatish Balay a->ht_insert_ct = 0; 2105133cdb44SSatish Balay 2106133cdb44SSatish Balay 21070ac07820SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 2108f09e8eb9SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 21090ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 21100ac07820SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 21110ac07820SSatish Balay ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 21120ac07820SSatish Balay if (oldmat->colmap) { 21130ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 21140ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 21150ac07820SSatish Balay PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int)); 21160ac07820SSatish Balay } else a->colmap = 0; 21170ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 21180ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 21190ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 21200ac07820SSatish Balay PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 21210ac07820SSatish Balay } else a->garray = 0; 21220ac07820SSatish Balay 21230ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 21240ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 21250ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 21260ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 21270ac07820SSatish Balay ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 21280ac07820SSatish Balay PLogObjectParent(mat,a->A); 21290ac07820SSatish Balay ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 21300ac07820SSatish Balay PLogObjectParent(mat,a->B); 21310ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 21320ac07820SSatish Balay if (flg) { 21330ac07820SSatish Balay ierr = MatPrintHelp(mat); CHKERRQ(ierr); 21340ac07820SSatish Balay } 21350ac07820SSatish Balay *newmat = mat; 21363a40ed3dSBarry Smith PetscFunctionReturn(0); 21370ac07820SSatish Balay } 213857b952d6SSatish Balay 213957b952d6SSatish Balay #include "sys.h" 214057b952d6SSatish Balay 21415615d1e5SSatish Balay #undef __FUNC__ 21425615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 214357b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 214457b952d6SSatish Balay { 214557b952d6SSatish Balay Mat A; 214657b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 214757b952d6SSatish Balay Scalar *vals,*buf; 214857b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 214957b952d6SSatish Balay MPI_Status status; 2150cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 215157b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 215240011551SBarry Smith int flg,tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 215357b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 215457b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 215557b952d6SSatish Balay 2156d64ed03dSBarry Smith PetscFunctionBegin; 215757b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 215857b952d6SSatish Balay 215957b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 216057b952d6SSatish Balay if (!rank) { 216157b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 2162e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 2163a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2164d64ed03dSBarry Smith if (header[3] < 0) { 2165a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ"); 2166d64ed03dSBarry Smith } 21676c5fab8fSBarry Smith } 2168d64ed03dSBarry Smith 2169ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 217057b952d6SSatish Balay M = header[1]; N = header[2]; 217157b952d6SSatish Balay 2172a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 217357b952d6SSatish Balay 217457b952d6SSatish Balay /* 217557b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 217657b952d6SSatish Balay divisible by the blocksize 217757b952d6SSatish Balay */ 217857b952d6SSatish Balay Mbs = M/bs; 217957b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 218057b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 218157b952d6SSatish Balay else Mbs++; 218257b952d6SSatish Balay if (extra_rows &&!rank) { 2183b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 218457b952d6SSatish Balay } 2185537820f0SBarry Smith 218657b952d6SSatish Balay /* determine ownership of all rows */ 218757b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 218857b952d6SSatish Balay m = mbs * bs; 2189cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 2190cee3aa6bSSatish Balay browners = rowners + size + 1; 2191ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 219257b952d6SSatish Balay rowners[0] = 0; 2193cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 2194cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 219557b952d6SSatish Balay rstart = rowners[rank]; 219657b952d6SSatish Balay rend = rowners[rank+1]; 219757b952d6SSatish Balay 219857b952d6SSatish Balay /* distribute row lengths to all processors */ 219957b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 220057b952d6SSatish Balay if (!rank) { 220157b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 2202e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 220357b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 220457b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 2205cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 2206ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 220757b952d6SSatish Balay PetscFree(sndcounts); 2208d64ed03dSBarry Smith } else { 2209ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr); 221057b952d6SSatish Balay } 221157b952d6SSatish Balay 221257b952d6SSatish Balay if (!rank) { 221357b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 221457b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 221557b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 221657b952d6SSatish Balay for ( i=0; i<size; i++ ) { 221757b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 221857b952d6SSatish Balay procsnz[i] += rowlengths[j]; 221957b952d6SSatish Balay } 222057b952d6SSatish Balay } 222157b952d6SSatish Balay PetscFree(rowlengths); 222257b952d6SSatish Balay 222357b952d6SSatish Balay /* determine max buffer needed and allocate it */ 222457b952d6SSatish Balay maxnz = 0; 222557b952d6SSatish Balay for ( i=0; i<size; i++ ) { 222657b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 222757b952d6SSatish Balay } 222857b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 222957b952d6SSatish Balay 223057b952d6SSatish Balay /* read in my part of the matrix column indices */ 223157b952d6SSatish Balay nz = procsnz[0]; 223257b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 223357b952d6SSatish Balay mycols = ibuf; 2234cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2235e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 2236cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2237cee3aa6bSSatish Balay 223857b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 223957b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 224057b952d6SSatish Balay nz = procsnz[i]; 2241e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 2242ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 224357b952d6SSatish Balay } 224457b952d6SSatish Balay /* read in the stuff for the last proc */ 224557b952d6SSatish Balay if ( size != 1 ) { 224657b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2247e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 224857b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 2249ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 225057b952d6SSatish Balay } 225157b952d6SSatish Balay PetscFree(cols); 2252d64ed03dSBarry Smith } else { 225357b952d6SSatish Balay /* determine buffer space needed for message */ 225457b952d6SSatish Balay nz = 0; 225557b952d6SSatish Balay for ( i=0; i<m; i++ ) { 225657b952d6SSatish Balay nz += locrowlens[i]; 225757b952d6SSatish Balay } 225857b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 225957b952d6SSatish Balay mycols = ibuf; 226057b952d6SSatish Balay /* receive message of column indices*/ 2261ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2262ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2263a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 226457b952d6SSatish Balay } 226557b952d6SSatish Balay 226657b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2267cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 2268cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 226957b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 2270cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 227157b952d6SSatish Balay masked1 = mask + Mbs; 227257b952d6SSatish Balay masked2 = masked1 + Mbs; 227357b952d6SSatish Balay rowcount = 0; nzcount = 0; 227457b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 227557b952d6SSatish Balay dcount = 0; 227657b952d6SSatish Balay odcount = 0; 227757b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 227857b952d6SSatish Balay kmax = locrowlens[rowcount]; 227957b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 228057b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 228157b952d6SSatish Balay if (!mask[tmp]) { 228257b952d6SSatish Balay mask[tmp] = 1; 228357b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 228457b952d6SSatish Balay else masked1[dcount++] = tmp; 228557b952d6SSatish Balay } 228657b952d6SSatish Balay } 228757b952d6SSatish Balay rowcount++; 228857b952d6SSatish Balay } 2289cee3aa6bSSatish Balay 229057b952d6SSatish Balay dlens[i] = dcount; 229157b952d6SSatish Balay odlens[i] = odcount; 2292cee3aa6bSSatish Balay 229357b952d6SSatish Balay /* zero out the mask elements we set */ 229457b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 229557b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 229657b952d6SSatish Balay } 2297cee3aa6bSSatish Balay 229857b952d6SSatish Balay /* create our matrix */ 2299537820f0SBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat); 2300537820f0SBarry Smith CHKERRQ(ierr); 230157b952d6SSatish Balay A = *newmat; 23026d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 230357b952d6SSatish Balay 230457b952d6SSatish Balay if (!rank) { 230557b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 230657b952d6SSatish Balay /* read in my part of the matrix numerical values */ 230757b952d6SSatish Balay nz = procsnz[0]; 230857b952d6SSatish Balay vals = buf; 2309cee3aa6bSSatish Balay mycols = ibuf; 2310cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2311e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 2312cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2313537820f0SBarry Smith 231457b952d6SSatish Balay /* insert into matrix */ 231557b952d6SSatish Balay jj = rstart*bs; 231657b952d6SSatish Balay for ( i=0; i<m; i++ ) { 231757b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 231857b952d6SSatish Balay mycols += locrowlens[i]; 231957b952d6SSatish Balay vals += locrowlens[i]; 232057b952d6SSatish Balay jj++; 232157b952d6SSatish Balay } 232257b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 232357b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 232457b952d6SSatish Balay nz = procsnz[i]; 232557b952d6SSatish Balay vals = buf; 2326e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 2327ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 232857b952d6SSatish Balay } 232957b952d6SSatish Balay /* the last proc */ 233057b952d6SSatish Balay if ( size != 1 ){ 233157b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2332cee3aa6bSSatish Balay vals = buf; 2333e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 233457b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 2335ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 233657b952d6SSatish Balay } 233757b952d6SSatish Balay PetscFree(procsnz); 2338d64ed03dSBarry Smith } else { 233957b952d6SSatish Balay /* receive numeric values */ 234057b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 234157b952d6SSatish Balay 234257b952d6SSatish Balay /* receive message of values*/ 234357b952d6SSatish Balay vals = buf; 2344cee3aa6bSSatish Balay mycols = ibuf; 2345ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2346ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2347a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 234857b952d6SSatish Balay 234957b952d6SSatish Balay /* insert into matrix */ 235057b952d6SSatish Balay jj = rstart*bs; 2351cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 235257b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 235357b952d6SSatish Balay mycols += locrowlens[i]; 235457b952d6SSatish Balay vals += locrowlens[i]; 235557b952d6SSatish Balay jj++; 235657b952d6SSatish Balay } 235757b952d6SSatish Balay } 235857b952d6SSatish Balay PetscFree(locrowlens); 235957b952d6SSatish Balay PetscFree(buf); 236057b952d6SSatish Balay PetscFree(ibuf); 236157b952d6SSatish Balay PetscFree(rowners); 236257b952d6SSatish Balay PetscFree(dlens); 2363cee3aa6bSSatish Balay PetscFree(mask); 23646d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 23656d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 23663a40ed3dSBarry Smith PetscFunctionReturn(0); 236757b952d6SSatish Balay } 236857b952d6SSatish Balay 236957b952d6SSatish Balay 2370133cdb44SSatish Balay 2371133cdb44SSatish Balay #undef __FUNC__ 2372133cdb44SSatish Balay #define __FUNC__ "MatMPIBAIJSetHashTableFactor" 2373133cdb44SSatish Balay /*@ 2374133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2375133cdb44SSatish Balay 2376133cdb44SSatish Balay Input Parameters: 2377133cdb44SSatish Balay . mat - the matrix 2378133cdb44SSatish Balay . fact - factor 2379133cdb44SSatish Balay 2380fee21e36SBarry Smith Collective on Mat 2381fee21e36SBarry Smith 2382133cdb44SSatish Balay Notes: 2383133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2384133cdb44SSatish Balay 2385133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2386133cdb44SSatish Balay 2387133cdb44SSatish Balay .seealso: MatSetOption() 2388133cdb44SSatish Balay @*/ 2389133cdb44SSatish Balay int MatMPIBAIJSetHashTableFactor(Mat mat,double fact) 2390133cdb44SSatish Balay { 239125fdafccSSatish Balay Mat_MPIBAIJ *baij; 2392133cdb44SSatish Balay 2393133cdb44SSatish Balay PetscFunctionBegin; 2394133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 239525fdafccSSatish Balay if (mat->type != MATMPIBAIJ) { 2396133cdb44SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only."); 2397133cdb44SSatish Balay } 2398133cdb44SSatish Balay baij = (Mat_MPIBAIJ*) mat->data; 2399133cdb44SSatish Balay baij->ht_fact = fact; 2400133cdb44SSatish Balay PetscFunctionReturn(0); 2401133cdb44SSatish Balay } 2402