1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 614e879edeSHong Zhang PetscScalar *va, *vv; 624e879edeSHong Zhang Vec vB, vA; 634e879edeSHong Zhang const PetscScalar *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101c7b600bfSPierre Jolivet { 102c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103c7b600bfSPierre Jolivet Vec vB, vA; 104c7b600bfSPierre Jolivet 105c7b600bfSPierre Jolivet PetscFunctionBegin; 106c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115c7b600bfSPierre Jolivet } 116c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25257508eceSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 25757508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 29457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 461eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 462b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 46348e59246SSatish Balay #else 464b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 46548e59246SSatish Balay #endif 466f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4679566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 468ab26458aSBarry Smith col = in[j]; 4695f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 470db4deed7SKarl Rupp } else col = in[j]; 4719566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 472ab26458aSBarry Smith } 473ab26458aSBarry Smith } 474d64ed03dSBarry Smith } else { 4755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 476ab26458aSBarry Smith if (!baij->donotstash) { 477ff2fd236SBarry Smith if (roworiented) { 4789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 479ff2fd236SBarry Smith } else { 4809566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 481ff2fd236SBarry Smith } 482abef11f7SSatish Balay } 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486ab26458aSBarry Smith } 4876fa18ffdSBarry Smith 4880bdbc534SSatish Balay #define HASH_KEY 0.6180339887 489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 493d71ae5a4SJacob Faibussowitsch { 4940bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 495ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 496b24ad042SBarry Smith PetscInt i, j, row, col; 497d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 498d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 499d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 500329f5518SBarry Smith PetscReal tmp; 5013eda8832SBarry Smith MatScalar **HD = baij->hd, value; 502b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5030bdbc534SSatish Balay 5040bdbc534SSatish Balay PetscFunctionBegin; 5050bdbc534SSatish Balay for (i = 0; i < m; i++) { 50676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5075f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5085f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50976bd3646SJed Brown } 5100bdbc534SSatish Balay row = im[i]; 511c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5120bdbc534SSatish Balay for (j = 0; j < n; j++) { 5130bdbc534SSatish Balay col = in[j]; 514db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 515db4deed7SKarl Rupp else value = v[i + j * m]; 516b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 517c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 518c2760754SSatish Balay h1 = HASH(size, key, tmp); 5190bdbc534SSatish Balay 520c2760754SSatish Balay idx = h1; 52176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 522187ce0cbSSatish Balay insert_ct++; 523187ce0cbSSatish Balay total_ct++; 524187ce0cbSSatish Balay if (HT[idx] != key) { 525fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 526187ce0cbSSatish Balay if (idx == size) { 527fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5285f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 529187ce0cbSSatish Balay } 530187ce0cbSSatish Balay } 53176bd3646SJed Brown } else if (HT[idx] != key) { 532fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 533c2760754SSatish Balay if (idx == size) { 534fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 594fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 595187ce0cbSSatish Balay if (idx == size) { 596fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 601fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 602c2760754SSatish Balay if (idx == size) { 603fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6045f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 605c2760754SSatish Balay } 606c2760754SSatish Balay } 607c2760754SSatish Balay baij_a = HD[idx]; 6080bdbc534SSatish Balay if (roworiented) { 609c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 610187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 611187ce0cbSSatish Balay value = v_t; 612187ce0cbSSatish Balay v_t += bs; 613fef45726SSatish Balay if (addv == ADD_VALUES) { 614c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 615ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 616b4cc0f5aSSatish Balay } 617fef45726SSatish Balay } else { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 626ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 627fef45726SSatish Balay } 628fef45726SSatish Balay } else { 629fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 631b4cc0f5aSSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } else { 6360bdbc534SSatish Balay if (!baij->donotstash) { 6370bdbc534SSatish Balay if (roworiented) { 6389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6390bdbc534SSatish Balay } else { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } 6420bdbc534SSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 64576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 646abf3b562SBarry Smith baij->ht_total_ct += total_ct; 647abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64876bd3646SJed Brown } 6493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500bdbc534SSatish Balay } 651133cdb44SSatish Balay 65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 653d71ae5a4SJacob Faibussowitsch { 654d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 655d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 656d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 657d6de1c52SSatish Balay 658133cdb44SSatish Balay PetscFunctionBegin; 659d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66054c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66154c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 662d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 663d6de1c52SSatish Balay row = idxm[i] - bsrstart; 664d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66554c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66654c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 667d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 668d6de1c52SSatish Balay col = idxn[j] - bscstart; 6699566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 670d64ed03dSBarry Smith } else { 67148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 673eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 674fa46199cSSatish Balay data--; 67548e59246SSatish Balay #else 67648e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67748e59246SSatish Balay #endif 67848e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 679d9d09a02SSatish Balay else { 68048e59246SSatish Balay col = data + idxn[j] % bs; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay } 684d6de1c52SSatish Balay } 685f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 686d6de1c52SSatish Balay } 6873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 688d6de1c52SSatish Balay } 689d6de1c52SSatish Balay 69066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 691d71ae5a4SJacob Faibussowitsch { 692d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 693d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 694d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 695329f5518SBarry Smith PetscReal sum = 0.0; 6963eda8832SBarry Smith MatScalar *v; 697d6de1c52SSatish Balay 698d64ed03dSBarry Smith PetscFunctionBegin; 699d6de1c52SSatish Balay if (baij->size == 1) { 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 701d6de1c52SSatish Balay } else { 702d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 703d6de1c52SSatish Balay v = amat->a; 7048a62d963SHong Zhang nz = amat->nz * bs2; 7058a62d963SHong Zhang for (i = 0; i < nz; i++) { 7069371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7079371c9d4SSatish Balay v++; 708d6de1c52SSatish Balay } 709d6de1c52SSatish Balay v = bmat->a; 7108a62d963SHong Zhang nz = bmat->nz * bs2; 7118a62d963SHong Zhang for (i = 0; i < nz; i++) { 7129371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7139371c9d4SSatish Balay v++; 714d6de1c52SSatish Balay } 715462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7168f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7178a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 718*e91c04dfSPierre Jolivet PetscReal *tmp; 719899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7206497c311SBarry Smith 7219566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7229371c9d4SSatish Balay v = amat->a; 7239371c9d4SSatish Balay jj = amat->j; 7248a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7258a62d963SHong Zhang for (j = 0; j < bs; j++) { 7268a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7278a62d963SHong Zhang for (row = 0; row < bs; row++) { 7289371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7299371c9d4SSatish Balay v++; 7308a62d963SHong Zhang } 7318a62d963SHong Zhang } 7328a62d963SHong Zhang jj++; 7338a62d963SHong Zhang } 7349371c9d4SSatish Balay v = bmat->a; 7359371c9d4SSatish Balay jj = bmat->j; 7368a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7378a62d963SHong Zhang for (j = 0; j < bs; j++) { 7388a62d963SHong Zhang col = bs * garray[*jj] + j; 7398a62d963SHong Zhang for (row = 0; row < bs; row++) { 7409371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7419371c9d4SSatish Balay v++; 7428a62d963SHong Zhang } 7438a62d963SHong Zhang } 7448a62d963SHong Zhang jj++; 7458a62d963SHong Zhang } 746*e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7478a62d963SHong Zhang *nrm = 0.0; 748d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 749*e91c04dfSPierre Jolivet if (tmp[j] > *nrm) *nrm = tmp[j]; 7508a62d963SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7528a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 753577dd1f9SKris Buschelman PetscReal *sums; 7549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7558a62d963SHong Zhang sum = 0.0; 7568a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7578a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7588a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7598a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7608a62d963SHong Zhang for (i = 0; i < nz; i++) { 7618a62d963SHong Zhang for (col = 0; col < bs; col++) { 7628a62d963SHong Zhang for (row = 0; row < bs; row++) { 7639371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7649371c9d4SSatish Balay v++; 7658a62d963SHong Zhang } 7668a62d963SHong Zhang } 7678a62d963SHong Zhang } 7688a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7698a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7708a62d963SHong Zhang for (i = 0; i < nz; i++) { 7718a62d963SHong Zhang for (col = 0; col < bs; col++) { 7728a62d963SHong Zhang for (row = 0; row < bs; row++) { 7739371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7749371c9d4SSatish Balay v++; 7758a62d963SHong Zhang } 7768a62d963SHong Zhang } 7778a62d963SHong Zhang } 7788a62d963SHong Zhang for (row = 0; row < bs; row++) { 7798a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 782462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7839566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 784ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 785d64ed03dSBarry Smith } 7863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 787d6de1c52SSatish Balay } 78857b952d6SSatish Balay 789fef45726SSatish Balay /* 790fef45726SSatish Balay Creates the hash table, and sets the table 791fef45726SSatish Balay This table is created only once. 792fef45726SSatish Balay If new entried need to be added to the matrix 793fef45726SSatish Balay then the hash table has to be destroyed and 794fef45726SSatish Balay recreated. 795fef45726SSatish Balay */ 79666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 797d71ae5a4SJacob Faibussowitsch { 798596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 799596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 800596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 801b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 802fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 803899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 804b24ad042SBarry Smith PetscInt *HT, key; 8053eda8832SBarry Smith MatScalar **HD; 806329f5518SBarry Smith PetscReal tmp; 8076cf91177SBarry Smith #if defined(PETSC_USE_INFO) 808b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8094a15367fSSatish Balay #endif 810fef45726SSatish Balay 811d64ed03dSBarry Smith PetscFunctionBegin; 8123ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 813fef45726SSatish Balay 814fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 815fca92195SBarry Smith ht_size = baij->ht_size; 8160bdbc534SSatish Balay 817fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8189566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 819b9e4cc15SSatish Balay HD = baij->hd; 820a07cd24cSSatish Balay HT = baij->ht; 821b9e4cc15SSatish Balay 822596b8d2eSBarry Smith /* Loop Over A */ 8230bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 824596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8250bdbc534SSatish Balay row = i + rstart; 8260bdbc534SSatish Balay col = aj[j] + cstart; 827596b8d2eSBarry Smith 828187ce0cbSSatish Balay key = row * Nbs + col + 1; 829fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 830fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 831fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 832fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 833fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 834596b8d2eSBarry Smith break; 8356cf91177SBarry Smith #if defined(PETSC_USE_INFO) 836187ce0cbSSatish Balay } else { 837187ce0cbSSatish Balay ct++; 838187ce0cbSSatish Balay #endif 839596b8d2eSBarry Smith } 840187ce0cbSSatish Balay } 8416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 842187ce0cbSSatish Balay if (k > max) max = k; 843187ce0cbSSatish Balay #endif 844596b8d2eSBarry Smith } 845596b8d2eSBarry Smith } 846596b8d2eSBarry Smith /* Loop Over B */ 8470bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 848596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8490bdbc534SSatish Balay row = i + rstart; 8500bdbc534SSatish Balay col = garray[bj[j]]; 851187ce0cbSSatish Balay key = row * Nbs + col + 1; 852fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 853fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 854fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 855fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 856fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 857596b8d2eSBarry Smith break; 8586cf91177SBarry Smith #if defined(PETSC_USE_INFO) 859187ce0cbSSatish Balay } else { 860187ce0cbSSatish Balay ct++; 861187ce0cbSSatish Balay #endif 862596b8d2eSBarry Smith } 863187ce0cbSSatish Balay } 8646cf91177SBarry Smith #if defined(PETSC_USE_INFO) 865187ce0cbSSatish Balay if (k > max) max = k; 866187ce0cbSSatish Balay #endif 867596b8d2eSBarry Smith } 868596b8d2eSBarry Smith } 869596b8d2eSBarry Smith 870596b8d2eSBarry Smith /* Print Summary */ 8716cf91177SBarry Smith #if defined(PETSC_USE_INFO) 872fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87326fbe8dcSKarl Rupp if (HT[i]) j++; 874c38d4ed2SBarry Smith } 875835f2295SStefano Zampini PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max)); 876187ce0cbSSatish Balay #endif 8773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878596b8d2eSBarry Smith } 87957b952d6SSatish Balay 88066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 881d71ae5a4SJacob Faibussowitsch { 882bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 883b24ad042SBarry Smith PetscInt nstash, reallocs; 884bbb85fb3SSatish Balay 885bbb85fb3SSatish Balay PetscFunctionBegin; 8863ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 887bbb85fb3SSatish Balay 8889566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8899566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8909566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8929566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8939566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 895bbb85fb3SSatish Balay } 896bbb85fb3SSatish Balay 89766976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 898d71ae5a4SJacob Faibussowitsch { 899bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90091c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 901b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 902e44c0bd4SBarry Smith PetscInt *row, *col; 903ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9043eda8832SBarry Smith MatScalar *val; 905b24ad042SBarry Smith PetscMPIInt n; 906bbb85fb3SSatish Balay 907bbb85fb3SSatish Balay PetscFunctionBegin; 9085fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9094cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 910a2d1c673SSatish Balay while (1) { 9119566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 912a2d1c673SSatish Balay if (!flg) break; 913a2d1c673SSatish Balay 914bbb85fb3SSatish Balay for (i = 0; i < n;) { 915bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 91726fbe8dcSKarl Rupp if (row[j] != rstart) break; 91826fbe8dcSKarl Rupp } 919bbb85fb3SSatish Balay if (j < n) ncols = j - i; 920bbb85fb3SSatish Balay else ncols = n - i; 921bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9229566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 923bbb85fb3SSatish Balay i = j; 924bbb85fb3SSatish Balay } 925bbb85fb3SSatish Balay } 9269566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 927a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9285e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 929a2d1c673SSatish Balay restore the original flags */ 930a2d1c673SSatish Balay r1 = baij->roworiented; 931a2d1c673SSatish Balay r2 = a->roworiented; 93291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93326fbe8dcSKarl Rupp 9347c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9357c922b88SBarry Smith a->roworiented = PETSC_FALSE; 936f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 937a2d1c673SSatish Balay while (1) { 9389566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 939a2d1c673SSatish Balay if (!flg) break; 940a2d1c673SSatish Balay 941a2d1c673SSatish Balay for (i = 0; i < n;) { 942a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94326fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94426fbe8dcSKarl Rupp if (row[j] != rstart) break; 94526fbe8dcSKarl Rupp } 946a2d1c673SSatish Balay if (j < n) ncols = j - i; 947a2d1c673SSatish Balay else ncols = n - i; 9489566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 949a2d1c673SSatish Balay i = j; 950a2d1c673SSatish Balay } 951a2d1c673SSatish Balay } 9529566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95326fbe8dcSKarl Rupp 954a2d1c673SSatish Balay baij->roworiented = r1; 955a2d1c673SSatish Balay a->roworiented = r2; 9565e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 957bbb85fb3SSatish Balay } 958bbb85fb3SSatish Balay 9599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 961bbb85fb3SSatish Balay 962bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9636aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 964bbb85fb3SSatish Balay /* 965bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 966bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 967bbb85fb3SSatish Balay */ 968bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 969462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97048a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 971bbb85fb3SSatish Balay } 972bbb85fb3SSatish Balay 97348a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 976bbb85fb3SSatish Balay 9776cf91177SBarry Smith #if defined(PETSC_USE_INFO) 978bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98026fbe8dcSKarl Rupp 981bbb85fb3SSatish Balay baij->ht_total_ct = 0; 982bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 983bbb85fb3SSatish Balay } 984bbb85fb3SSatish Balay #endif 985bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9869566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 98726fbe8dcSKarl Rupp 988bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 989bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 990bbb85fb3SSatish Balay } 991bbb85fb3SSatish Balay 9929566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99326fbe8dcSKarl Rupp 994f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9954f9cfa9eSBarry Smith 9964f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 997f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 998e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 999462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1000e56f5c9eSBarry Smith } 10013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1002bbb85fb3SSatish Balay } 100357b952d6SSatish Balay 10047da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10059804daf3SBarry Smith #include <petscdraw.h> 1006d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1007d71ae5a4SJacob Faibussowitsch { 100857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10097da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1010d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1011ace3abfcSBarry Smith PetscBool iascii, isdraw; 1012b0a32e0cSBarry Smith PetscViewer sviewer; 1013f3ef73ceSBarry Smith PetscViewerFormat format; 101457b952d6SSatish Balay 1015d64ed03dSBarry Smith PetscFunctionBegin; 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 101832077d6dSBarry Smith if (iascii) { 10199566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1020456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10214e220ebcSLois Curfman McInnes MatInfo info; 10229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10259371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1026835f2295SStefano Zampini mat->rmap->bs, info.memory)); 10279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10349566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1036fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay 10440f5bd95cSBarry Smith if (isdraw) { 1045b0a32e0cSBarry Smith PetscDraw draw; 1046ace3abfcSBarry Smith PetscBool isnull; 10479566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10489566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10493ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105057b952d6SSatish Balay } 105157b952d6SSatish Balay 10527da1fb6eSBarry Smith { 105357b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105457b952d6SSatish Balay Mat A; 105557b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1056d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10573eda8832SBarry Smith MatScalar *a; 10583e219373SBarry Smith const char *matname; 105957b952d6SSatish Balay 1060f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1061f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10629566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1063dd400576SPatrick Sanan if (rank == 0) { 10649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1065d64ed03dSBarry Smith } else { 10669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 106757b952d6SSatish Balay } 10689566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10699566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10709566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107157b952d6SSatish Balay 107257b952d6SSatish Balay /* copy over the A part */ 107357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10749371c9d4SSatish Balay ai = Aloc->i; 10759371c9d4SSatish Balay aj = Aloc->j; 10769371c9d4SSatish Balay a = Aloc->a; 10779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 107857b952d6SSatish Balay 107957b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1080899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108257b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1083899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108457b952d6SSatish Balay for (k = 0; k < bs; k++) { 10859566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10869371c9d4SSatish Balay col++; 10879371c9d4SSatish Balay a += bs; 108857b952d6SSatish Balay } 108957b952d6SSatish Balay } 109057b952d6SSatish Balay } 109157b952d6SSatish Balay /* copy over the B part */ 109257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10939371c9d4SSatish Balay ai = Aloc->i; 10949371c9d4SSatish Balay aj = Aloc->j; 10959371c9d4SSatish Balay a = Aloc->a; 109657b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1097899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 109826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 109957b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110057b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110157b952d6SSatish Balay for (k = 0; k < bs; k++) { 11029566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11039371c9d4SSatish Balay col++; 11049371c9d4SSatish Balay a += bs; 110557b952d6SSatish Balay } 110657b952d6SSatish Balay } 110757b952d6SSatish Balay } 11089566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111155843e3eSBarry Smith /* 111255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1113b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111455843e3eSBarry Smith */ 11159566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111623a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1117dd400576SPatrick Sanan if (rank == 0) { 1118f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1119f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 112057b952d6SSatish Balay } 11219566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11229566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112357b952d6SSatish Balay } 11243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112557b952d6SSatish Balay } 112657b952d6SSatish Balay 1127618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1129d71ae5a4SJacob Faibussowitsch { 1130b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1131b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1132b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1133b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113417a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 11356497c311SBarry Smith PetscCount nz, hnz; 1136b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1137b51a4376SLisandro Dalcin PetscScalar *matvals; 113817a3732bSBarry Smith PetscMPIInt rank; 1139660746e0SBarry Smith 1140660746e0SBarry Smith PetscFunctionBegin; 11419566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1142b51a4376SLisandro Dalcin 1143b51a4376SLisandro Dalcin M = mat->rmap->N; 1144b51a4376SLisandro Dalcin N = mat->cmap->N; 1145b51a4376SLisandro Dalcin m = mat->rmap->n; 1146b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1147b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1148b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1149b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1150b51a4376SLisandro Dalcin 1151b51a4376SLisandro Dalcin /* write matrix header */ 1152660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11539371c9d4SSatish Balay header[1] = M; 11549371c9d4SSatish Balay header[2] = N; 11556497c311SBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115617a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 115717a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11589566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1159660746e0SBarry Smith 1160b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1162b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11639371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11659566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1166660746e0SBarry Smith 1167b51a4376SLisandro Dalcin /* fill in and store column indices */ 11689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1169b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1170b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1171b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1172b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11739371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1174660746e0SBarry Smith } 1175b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11769371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1177b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11789371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1179660746e0SBarry Smith } 1180660746e0SBarry Smith } 11816497c311SBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz); 11829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11839566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1184660746e0SBarry Smith 1185b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1187b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1188b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1189b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1190b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11919371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1192660746e0SBarry Smith } 1193b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11949371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1195b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11969371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1197660746e0SBarry Smith } 1198b51a4376SLisandro Dalcin } 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12009566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1201660746e0SBarry Smith 1202b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12039566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1205660746e0SBarry Smith } 1206660746e0SBarry Smith 1207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1208d71ae5a4SJacob Faibussowitsch { 1209ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121057b952d6SSatish Balay 1211d64ed03dSBarry Smith PetscFunctionBegin; 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1216660746e0SBarry Smith if (iascii || isdraw || issocket) { 12179566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12181baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122057b952d6SSatish Balay } 122157b952d6SSatish Balay 122266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1223d71ae5a4SJacob Faibussowitsch { 1224cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1225b24ad042SBarry Smith PetscInt nt; 1226cee3aa6bSSatish Balay 1227d64ed03dSBarry Smith PetscFunctionBegin; 12289566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12295f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12309566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1231da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12329566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12339566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12359566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1237cee3aa6bSSatish Balay } 1238cee3aa6bSSatish Balay 123966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1240d71ae5a4SJacob Faibussowitsch { 1241cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1242d64ed03dSBarry Smith 1243d64ed03dSBarry Smith PetscFunctionBegin; 12449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12459566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12479566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1249cee3aa6bSSatish Balay } 1250cee3aa6bSSatish Balay 125166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1252d71ae5a4SJacob Faibussowitsch { 1253cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1254cee3aa6bSSatish Balay 1255d64ed03dSBarry Smith PetscFunctionBegin; 1256cee3aa6bSSatish Balay /* do nondiagonal part */ 12579566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1258cee3aa6bSSatish Balay /* do local part */ 12599566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1260e4a140f6SJunchao Zhang /* add partial results together */ 12619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1264cee3aa6bSSatish Balay } 1265cee3aa6bSSatish Balay 126666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1267d71ae5a4SJacob Faibussowitsch { 1268cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1269cee3aa6bSSatish Balay 1270d64ed03dSBarry Smith PetscFunctionBegin; 1271cee3aa6bSSatish Balay /* do nondiagonal part */ 12729566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1273cee3aa6bSSatish Balay /* do local part */ 12749566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1275e4a140f6SJunchao Zhang /* add partial results together */ 12769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12779566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1279cee3aa6bSSatish Balay } 1280cee3aa6bSSatish Balay 1281cee3aa6bSSatish Balay /* 1282cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1283cee3aa6bSSatish Balay diagonal block 1284cee3aa6bSSatish Balay */ 128566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1286d71ae5a4SJacob Faibussowitsch { 1287d64ed03dSBarry Smith PetscFunctionBegin; 12885f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12899566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1291cee3aa6bSSatish Balay } 1292cee3aa6bSSatish Balay 129366976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1294d71ae5a4SJacob Faibussowitsch { 1295cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1296d64ed03dSBarry Smith 1297d64ed03dSBarry Smith PetscFunctionBegin; 12989566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12999566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1301cee3aa6bSSatish Balay } 1302026e39d0SSatish Balay 1303d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1304d71ae5a4SJacob Faibussowitsch { 1305acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1307d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1308d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1309899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1310acdf5bf4SSatish Balay 1311d64ed03dSBarry Smith PetscFunctionBegin; 13125f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13135f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1314acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1315acdf5bf4SSatish Balay 1316acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1317acdf5bf4SSatish Balay /* 1318acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1319acdf5bf4SSatish Balay */ 1320acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1321b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1322bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1323acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1325acdf5bf4SSatish Balay } 13269566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1327acdf5bf4SSatish Balay } 1328d9d09a02SSatish Balay lrow = row - brstart; 1329acdf5bf4SSatish Balay 13309371c9d4SSatish Balay pvA = &vworkA; 13319371c9d4SSatish Balay pcA = &cworkA; 13329371c9d4SSatish Balay pvB = &vworkB; 13339371c9d4SSatish Balay pcB = &cworkB; 13349371c9d4SSatish Balay if (!v) { 13359371c9d4SSatish Balay pvA = NULL; 13369371c9d4SSatish Balay pvB = NULL; 13379371c9d4SSatish Balay } 13389371c9d4SSatish Balay if (!idx) { 13399371c9d4SSatish Balay pcA = NULL; 13409371c9d4SSatish Balay if (!v) pcB = NULL; 13419371c9d4SSatish Balay } 13429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13439566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1344acdf5bf4SSatish Balay nztot = nzA + nzB; 1345acdf5bf4SSatish Balay 1346acdf5bf4SSatish Balay cmap = mat->garray; 1347acdf5bf4SSatish Balay if (v || idx) { 1348acdf5bf4SSatish Balay if (nztot) { 1349acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1350b24ad042SBarry Smith PetscInt imark = -1; 1351acdf5bf4SSatish Balay if (v) { 1352acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1353acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1354d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1355acdf5bf4SSatish Balay else break; 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay imark = i; 1358acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1359acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1360acdf5bf4SSatish Balay } 1361acdf5bf4SSatish Balay if (idx) { 1362acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1363acdf5bf4SSatish Balay if (imark > -1) { 1364ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1365acdf5bf4SSatish Balay } else { 1366acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136726fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1368acdf5bf4SSatish Balay else break; 1369acdf5bf4SSatish Balay } 1370acdf5bf4SSatish Balay imark = i; 1371acdf5bf4SSatish Balay } 1372d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1373d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1374acdf5bf4SSatish Balay } 1375d64ed03dSBarry Smith } else { 1376f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1377f4259b30SLisandro Dalcin if (v) *v = NULL; 1378d212a18eSSatish Balay } 1379acdf5bf4SSatish Balay } 1380acdf5bf4SSatish Balay *nz = nztot; 13819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13829566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1387d71ae5a4SJacob Faibussowitsch { 1388acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1389d64ed03dSBarry Smith 1390d64ed03dSBarry Smith PetscFunctionBegin; 13915f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1392acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1394acdf5bf4SSatish Balay } 1395acdf5bf4SSatish Balay 139666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1397d71ae5a4SJacob Faibussowitsch { 139858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1399d64ed03dSBarry Smith 1400d64ed03dSBarry Smith PetscFunctionBegin; 14019566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140458667388SSatish Balay } 14050ac07820SSatish Balay 140666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1407d71ae5a4SJacob Faibussowitsch { 14084e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14094e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14103966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14110ac07820SSatish Balay 1412d64ed03dSBarry Smith PetscFunctionBegin; 1413d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141426fbe8dcSKarl Rupp 14159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141626fbe8dcSKarl Rupp 14179371c9d4SSatish Balay isend[0] = info->nz_used; 14189371c9d4SSatish Balay isend[1] = info->nz_allocated; 14199371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14209371c9d4SSatish Balay isend[3] = info->memory; 14219371c9d4SSatish Balay isend[4] = info->mallocs; 142226fbe8dcSKarl Rupp 14239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142426fbe8dcSKarl Rupp 14259371c9d4SSatish Balay isend[0] += info->nz_used; 14269371c9d4SSatish Balay isend[1] += info->nz_allocated; 14279371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14289371c9d4SSatish Balay isend[3] += info->memory; 14299371c9d4SSatish Balay isend[4] += info->mallocs; 143026fbe8dcSKarl Rupp 14310ac07820SSatish Balay if (flag == MAT_LOCAL) { 14324e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14334e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14344e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14354e220ebcSLois Curfman McInnes info->memory = isend[3]; 14364e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14370ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1438462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 143926fbe8dcSKarl Rupp 14404e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14414e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14424e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14434e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14444e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14450ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1446462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144726fbe8dcSKarl Rupp 14484e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14494e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14504e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14514e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14524e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14544e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14554e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14564e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14580ac07820SSatish Balay } 14590ac07820SSatish Balay 146066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1461d71ae5a4SJacob Faibussowitsch { 146258667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146358667388SSatish Balay 1464d64ed03dSBarry Smith PetscFunctionBegin; 146512c028f9SKris Buschelman switch (op) { 1466512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1469a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147143674050SBarry Smith MatCheckPreallocated(A, 1); 14729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14739566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147412c028f9SKris Buschelman break; 147512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147643674050SBarry Smith MatCheckPreallocated(A, 1); 14774e0d8c25SBarry Smith a->roworiented = flg; 147826fbe8dcSKarl Rupp 14799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148112c028f9SKris Buschelman break; 14828c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1483d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1484d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1485d71ae5a4SJacob Faibussowitsch break; 1486d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1487d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1488d71ae5a4SJacob Faibussowitsch break; 148912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14904e0d8c25SBarry Smith a->ht_flag = flg; 1491abf3b562SBarry Smith a->ht_fact = 1.39; 149212c028f9SKris Buschelman break; 149377e54ba9SKris Buschelman case MAT_SYMMETRIC: 149477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14952188ac68SBarry Smith case MAT_HERMITIAN: 1496c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14972188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1498b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1499b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1500b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150177e54ba9SKris Buschelman break; 1502d71ae5a4SJacob Faibussowitsch default: 1503d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1504d64ed03dSBarry Smith } 15053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150658667388SSatish Balay } 150758667388SSatish Balay 150866976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1509d71ae5a4SJacob Faibussowitsch { 15100ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15110ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15120ac07820SSatish Balay Mat B; 1513d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1514d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15153eda8832SBarry Smith MatScalar *a; 15160ac07820SSatish Balay 1517d64ed03dSBarry Smith PetscFunctionBegin; 15187fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1519cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15209566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15229566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15232e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15249566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1525fc4dec0aSBarry Smith } else { 1526fc4dec0aSBarry Smith B = *matout; 1527fc4dec0aSBarry Smith } 15280ac07820SSatish Balay 15290ac07820SSatish Balay /* copy over the A part */ 15300ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15319371c9d4SSatish Balay ai = Aloc->i; 15329371c9d4SSatish Balay aj = Aloc->j; 15339371c9d4SSatish Balay a = Aloc->a; 15349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15350ac07820SSatish Balay 15360ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1537899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15390ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1540899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15410ac07820SSatish Balay for (k = 0; k < bs; k++) { 15429566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154326fbe8dcSKarl Rupp 15449371c9d4SSatish Balay col++; 15459371c9d4SSatish Balay a += bs; 15460ac07820SSatish Balay } 15470ac07820SSatish Balay } 15480ac07820SSatish Balay } 15490ac07820SSatish Balay /* copy over the B part */ 15500ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15519371c9d4SSatish Balay ai = Aloc->i; 15529371c9d4SSatish Balay aj = Aloc->j; 15539371c9d4SSatish Balay a = Aloc->a; 15540ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1555899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155626fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15570ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15580ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15590ac07820SSatish Balay for (k = 0; k < bs; k++) { 15609566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156126fbe8dcSKarl Rupp col++; 156226fbe8dcSKarl Rupp a += bs; 15630ac07820SSatish Balay } 15640ac07820SSatish Balay } 15650ac07820SSatish Balay } 15669566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15690ac07820SSatish Balay 1570cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157148a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15730ac07820SSatish Balay } 15740e95ebc0SSatish Balay 157566976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1576d71ae5a4SJacob Faibussowitsch { 157736c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157836c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1579b24ad042SBarry Smith PetscInt s1, s2, s3; 15800e95ebc0SSatish Balay 1581d64ed03dSBarry Smith PetscFunctionBegin; 15829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158336c4a09eSSatish Balay if (rr) { 15849566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15855f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 158636c4a09eSSatish Balay /* Overlap communication with computation. */ 15879566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158836c4a09eSSatish Balay } 15890e95ebc0SSatish Balay if (ll) { 15909566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15915f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1592dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15930e95ebc0SSatish Balay } 159436c4a09eSSatish Balay /* scale the diagonal block */ 1595dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 159636c4a09eSSatish Balay 159736c4a09eSSatish Balay if (rr) { 159836c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15999566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1600dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160136c4a09eSSatish Balay } 16023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16030e95ebc0SSatish Balay } 16040e95ebc0SSatish Balay 160566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1606d71ae5a4SJacob Faibussowitsch { 16070ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160865a92638SMatthew G. Knepley PetscInt *lrows; 16096e520ac8SStefano Zampini PetscInt r, len; 161094342113SStefano Zampini PetscBool cong; 16110ac07820SSatish Balay 1612d64ed03dSBarry Smith PetscFunctionBegin; 16136e520ac8SStefano Zampini /* get locally owned rows */ 16149566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1615dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 161697b48c8fSBarry Smith if (x && b) { 161765a92638SMatthew G. Knepley const PetscScalar *xx; 161865a92638SMatthew G. Knepley PetscScalar *bb; 161965a92638SMatthew G. Knepley 16209566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16219566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 162265a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162597b48c8fSBarry Smith } 162697b48c8fSBarry Smith 16270ac07820SSatish Balay /* actually zap the local rows */ 162872dacd9aSBarry Smith /* 162972dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1630a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163172dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 163272dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163372dacd9aSBarry Smith 163472dacd9aSBarry Smith */ 16359c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16369566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16379566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163894342113SStefano Zampini if ((diag != 0.0) && cong) { 16399566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1640f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16419566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 164200045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 164365a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 164465a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16459566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1646a07cd24cSSatish Balay } 16479566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16489566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16499c957beeSSatish Balay } else { 16509566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1651a07cd24cSSatish Balay } 16529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16534f9cfa9eSBarry Smith 16544f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1655f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1656e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1657462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1658e56f5c9eSBarry Smith } 16593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16600ac07820SSatish Balay } 166172dacd9aSBarry Smith 166266976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1663d71ae5a4SJacob Faibussowitsch { 16646f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 16656497c311SBarry Smith PetscMPIInt n, p = 0; 1666131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16676f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16686f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16696f0a72daSMatthew G. Knepley PetscSF sf; 16706f0a72daSMatthew G. Knepley const PetscScalar *xx; 16716f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16726f0a72daSMatthew G. Knepley Vec xmask, lmask; 16736f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16746f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16756f0a72daSMatthew G. Knepley PetscScalar *aa; 16766f0a72daSMatthew G. Knepley 16776f0a72daSMatthew G. Knepley PetscFunctionBegin; 16786497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->n, &n)); 16796f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16816f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16836f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16846f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16855f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16865ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16879566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16885ba17502SJed Brown } 16896f0a72daSMatthew G. Knepley rrows[r].rank = p; 16906f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16916f0a72daSMatthew G. Knepley } 16929566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16939566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16946f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16959566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16969566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16979566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16986f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16999371c9d4SSatish Balay for (r = 0; r < n; ++r) 17009371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17016f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17029566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17034cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 17049566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17059566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17069566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17076f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17109566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17126f0a72daSMatthew G. Knepley if (x) { 17139566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17169566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17176f0a72daSMatthew G. Knepley } 17189566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17194cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17206f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17216f0a72daSMatthew G. Knepley row = lrows[i]; 17226f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1723835f2295SStefano Zampini aa = baij->a + baij->i[row / bs] * bs2 + (row % bs); 17246f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17256f0a72daSMatthew G. Knepley aa[0] = 0.0; 17266f0a72daSMatthew G. Knepley aa += bs; 17276f0a72daSMatthew G. Knepley } 17286f0a72daSMatthew G. Knepley } 17296f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17306f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17316f0a72daSMatthew G. Knepley row = i / bs; 17326f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17336f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17346f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17356f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1736835f2295SStefano Zampini aa = baij->a + j * bs2 + (i % bs) + bs * k; 173789ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17386f0a72daSMatthew G. Knepley aa[0] = 0.0; 17396f0a72daSMatthew G. Knepley } 17406f0a72daSMatthew G. Knepley } 17416f0a72daSMatthew G. Knepley } 17426f0a72daSMatthew G. Knepley } 17436f0a72daSMatthew G. Knepley if (x) { 17449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17466f0a72daSMatthew G. Knepley } 17479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17499566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17504f9cfa9eSBarry Smith 17514f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1752f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17534f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1754462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17554f9cfa9eSBarry Smith } 17563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17576f0a72daSMatthew G. Knepley } 17586f0a72daSMatthew G. Knepley 175966976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1760d71ae5a4SJacob Faibussowitsch { 1761bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1762d64ed03dSBarry Smith 1763d64ed03dSBarry Smith PetscFunctionBegin; 17649566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1766bb5a7306SBarry Smith } 1767bb5a7306SBarry Smith 17686849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17690ac07820SSatish Balay 177066976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1771d71ae5a4SJacob Faibussowitsch { 17727fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17737fc3c18eSBarry Smith Mat a, b, c, d; 1774ace3abfcSBarry Smith PetscBool flg; 17757fc3c18eSBarry Smith 17767fc3c18eSBarry Smith PetscFunctionBegin; 17779371c9d4SSatish Balay a = matA->A; 17789371c9d4SSatish Balay b = matA->B; 17799371c9d4SSatish Balay c = matB->A; 17809371c9d4SSatish Balay d = matB->B; 17817fc3c18eSBarry Smith 17829566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178348a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1784462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17867fc3c18eSBarry Smith } 17877fc3c18eSBarry Smith 178866976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1789d71ae5a4SJacob Faibussowitsch { 17903c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17913c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17923c896bc6SHong Zhang 17933c896bc6SHong Zhang PetscFunctionBegin; 17943c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17953c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17969566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17973c896bc6SHong Zhang } else { 17989566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17999566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18003c896bc6SHong Zhang } 18019566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18033c896bc6SHong Zhang } 1804273d9f13SBarry Smith 1805d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1806d71ae5a4SJacob Faibussowitsch { 1807001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18084de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18094de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18104de5dceeSHong Zhang 18114de5dceeSHong Zhang PetscFunctionBegin; 18129566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18144de5dceeSHong Zhang } 18154de5dceeSHong Zhang 181666976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1817d71ae5a4SJacob Faibussowitsch { 18184fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18194fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18204fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1821b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18224fe895cdSHong Zhang 18234fe895cdSHong Zhang PetscFunctionBegin; 18244fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18254fe895cdSHong Zhang PetscScalar alpha = a; 18264fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18274fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18289566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1829792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18304fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18314fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18329566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1833792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18349566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1835ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18369566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18374fe895cdSHong Zhang } else { 18384de5dceeSHong Zhang Mat B; 18394de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18429566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18439566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18459566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18469566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18479566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18489566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18499566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18504de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18519566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18529566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18539566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18549566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18554fe895cdSHong Zhang } 18563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18574fe895cdSHong Zhang } 18584fe895cdSHong Zhang 185966976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1860d71ae5a4SJacob Faibussowitsch { 18615f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18625f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18632726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18642726fb6dSPierre Jolivet 18659566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18669566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18675f80ce2aSJacob Faibussowitsch } 18683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18692726fb6dSPierre Jolivet } 18702726fb6dSPierre Jolivet 187166976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1872d71ae5a4SJacob Faibussowitsch { 187399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187499cafbc1SBarry Smith 187599cafbc1SBarry Smith PetscFunctionBegin; 18769566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18779566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187999cafbc1SBarry Smith } 188099cafbc1SBarry Smith 188166976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1882d71ae5a4SJacob Faibussowitsch { 188399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188499cafbc1SBarry Smith 188599cafbc1SBarry Smith PetscFunctionBegin; 18869566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18879566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188999cafbc1SBarry Smith } 189099cafbc1SBarry Smith 189166976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1892d71ae5a4SJacob Faibussowitsch { 18934aa3045dSJed Brown IS iscol_local; 18944aa3045dSJed Brown PetscInt csize; 18954aa3045dSJed Brown 18964aa3045dSJed Brown PetscFunctionBegin; 18979566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1898b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18999566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19005f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1901b79d0421SJed Brown } else { 19029566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1903b79d0421SJed Brown } 1904fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1905b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19069566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1908b79d0421SJed Brown } 19093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19104aa3045dSJed Brown } 191117df9f7cSHong Zhang 191282094794SBarry Smith /* 191382094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191482094794SBarry Smith in local and then by concatenating the local matrices the end result. 19157dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19168f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 191782094794SBarry Smith */ 1918fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1919d71ae5a4SJacob Faibussowitsch { 192082094794SBarry Smith PetscMPIInt rank, size; 192182094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1922c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 192329dcf524SDmitry Karpeev Mat M, Mreuse; 192482094794SBarry Smith MatScalar *vwork, *aa; 1925ce94432eSBarry Smith MPI_Comm comm; 192629dcf524SDmitry Karpeev IS isrow_new, iscol_new; 192782094794SBarry Smith Mat_SeqBAIJ *aij; 192882094794SBarry Smith 192982094794SBarry Smith PetscFunctionBegin; 19309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 193329dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193429dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19359566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1936864bd19bSPierre Jolivet if (isrow == iscol) { 1937864bd19bSPierre Jolivet iscol_new = isrow_new; 1938864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1939864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194082094794SBarry Smith 194182094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19435f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1944fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 194582094794SBarry Smith } else { 1946fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 194782094794SBarry Smith } 19489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195082094794SBarry Smith /* 195182094794SBarry Smith m - number of local rows 195282094794SBarry Smith n - number of columns (same on all processors) 195382094794SBarry Smith rstart - first row in new global matrix generated 195482094794SBarry Smith */ 19559566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19569566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195782094794SBarry Smith m = m / bs; 195882094794SBarry Smith n = n / bs; 195982094794SBarry Smith 196082094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196157508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 196282094794SBarry Smith ii = aij->i; 196382094794SBarry Smith jj = aij->j; 196482094794SBarry Smith 196582094794SBarry Smith /* 196682094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196782094794SBarry Smith portions of the matrix in order to do correct preallocation 196882094794SBarry Smith */ 196982094794SBarry Smith 197082094794SBarry Smith /* first get start and end of "diagonal" columns */ 197182094794SBarry Smith if (csize == PETSC_DECIDE) { 19729566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197382094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197482094794SBarry Smith nlocal = m; 197582094794SBarry Smith } else { 197682094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197782094794SBarry Smith } 197882094794SBarry Smith } else { 197982094794SBarry Smith nlocal = csize / bs; 198082094794SBarry Smith } 19819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 198282094794SBarry Smith rstart = rend - nlocal; 1983aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198482094794SBarry Smith 198582094794SBarry Smith /* next, compute all the lengths */ 19869566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198782094794SBarry Smith for (i = 0; i < m; i++) { 198882094794SBarry Smith jend = ii[i + 1] - ii[i]; 198982094794SBarry Smith olen = 0; 199082094794SBarry Smith dlen = 0; 199182094794SBarry Smith for (j = 0; j < jend; j++) { 199282094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199382094794SBarry Smith else dlen++; 199482094794SBarry Smith jj++; 199582094794SBarry Smith } 199682094794SBarry Smith olens[i] = olen; 199782094794SBarry Smith dlens[i] = dlen; 199882094794SBarry Smith } 19999566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 2001fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 20029566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20039566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20049566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200582094794SBarry Smith } else { 200682094794SBarry Smith PetscInt ml, nl; 200782094794SBarry Smith 200882094794SBarry Smith M = *newmat; 20099566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20105f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20119566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 201282094794SBarry Smith /* 201382094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201482094794SBarry Smith rather than the slower MatSetValues(). 201582094794SBarry Smith */ 201682094794SBarry Smith M->was_assembled = PETSC_TRUE; 201782094794SBarry Smith M->assembled = PETSC_FALSE; 201882094794SBarry Smith } 20199566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20209566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202157508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 202282094794SBarry Smith ii = aij->i; 202382094794SBarry Smith jj = aij->j; 202482094794SBarry Smith aa = aij->a; 202582094794SBarry Smith for (i = 0; i < m; i++) { 202682094794SBarry Smith row = rstart / bs + i; 202782094794SBarry Smith nz = ii[i + 1] - ii[i]; 20289371c9d4SSatish Balay cwork = jj; 20298e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20309371c9d4SSatish Balay vwork = aa; 20318e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20329566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203382094794SBarry Smith } 203482094794SBarry Smith 20359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203782094794SBarry Smith *newmat = M; 203882094794SBarry Smith 203982094794SBarry Smith /* save submatrix used in processor for next request */ 204082094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20429566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204382094794SBarry Smith } 20443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204582094794SBarry Smith } 204682094794SBarry Smith 204766976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2048d71ae5a4SJacob Faibussowitsch { 204982094794SBarry Smith MPI_Comm comm, pcomm; 2050a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205182094794SBarry Smith const PetscInt *rows; 2052dbf0e21dSBarry Smith PetscMPIInt size; 2053a0a83eb5SRémi Lacroix IS crowp, lcolp; 205482094794SBarry Smith 205582094794SBarry Smith PetscFunctionBegin; 20569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205782094794SBarry Smith /* make a collective version of 'rowp' */ 20589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 205982094794SBarry Smith if (pcomm == comm) { 206082094794SBarry Smith crowp = rowp; 206182094794SBarry Smith } else { 20629566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20649566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20659566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206682094794SBarry Smith } 20679566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2068a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2071dbf0e21dSBarry Smith if (size == 1) { 207282094794SBarry Smith lcolp = colp; 207382094794SBarry Smith } else { 20749566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207582094794SBarry Smith } 20769566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207775f6568bSJed Brown /* now we just get the submatrix */ 20789566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2079fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2080a0a83eb5SRémi Lacroix /* clean up */ 208148a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 208248a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208482094794SBarry Smith } 208582094794SBarry Smith 208666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2087d71ae5a4SJacob Faibussowitsch { 20888c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20898c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20908c7482ecSBarry Smith 20918c7482ecSBarry Smith PetscFunctionBegin; 209226fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209326fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20958c7482ecSBarry Smith } 20968c7482ecSBarry Smith 209766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2098d71ae5a4SJacob Faibussowitsch { 2099f6d58c54SBarry Smith Mat B; 2100f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2101f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2102f6d58c54SBarry Smith Mat_SeqAIJ *b; 2103f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2104f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2105f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2106f6d58c54SBarry Smith 2107f6d58c54SBarry Smith PetscFunctionBegin; 21089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2110f6d58c54SBarry Smith 21112ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2113ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2115f6d58c54SBarry Smith displs = recvcounts + size; 2116f6d58c54SBarry Smith for (i = 0; i < size; i++) { 21176497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i])); 21186497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i])); 2119f6d58c54SBarry Smith } 21209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21212ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21249566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2126f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2127f6d58c54SBarry Smith 21282ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2129f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2130f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2131f6d58c54SBarry Smith a_jsendbuf = ad->j; 2132f6d58c54SBarry Smith b_jsendbuf = bd->j; 2133f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2134f6d58c54SBarry Smith cnt = 0; 2135f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2136f6d58c54SBarry Smith /* put in lower diagonal portion */ 2137f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2138f6d58c54SBarry Smith while (m > 0) { 2139f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2140f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2141f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2142f6d58c54SBarry Smith m--; 2143f6d58c54SBarry Smith } 2144f6d58c54SBarry Smith 2145f6d58c54SBarry Smith /* put in diagonal portion */ 2146ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2147f6d58c54SBarry Smith 2148f6d58c54SBarry Smith /* put in upper diagonal portion */ 2149ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2150f6d58c54SBarry Smith } 21515f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2152f6d58c54SBarry Smith 21532ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2154f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2155f6d58c54SBarry Smith recvcounts[i] = 0; 2156ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2157f6d58c54SBarry Smith } 2158f6d58c54SBarry Smith displs[0] = 0; 2159ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21615804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2162f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2164f6d58c54SBarry Smith /* set the b->i indices */ 2165f6d58c54SBarry Smith b->i[0] = 0; 2166ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21679566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21709566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2171f6d58c54SBarry Smith 2172b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2173f6d58c54SBarry Smith *newmat = B; 21743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2175f6d58c54SBarry Smith } 2176f6d58c54SBarry Smith 217766976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2178d71ae5a4SJacob Faibussowitsch { 2179b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2180f4259b30SLisandro Dalcin Vec bb1 = NULL; 2181b1a666ecSBarry Smith 2182b1a666ecSBarry Smith PetscFunctionBegin; 2183b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2186b1a666ecSBarry Smith } 2187b1a666ecSBarry Smith 218848a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21894e980039SJed Brown 2190b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2191b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2193b1a666ecSBarry Smith its--; 2194b1a666ecSBarry Smith } 2195b1a666ecSBarry Smith 2196b1a666ecSBarry Smith while (its--) { 21979566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21989566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2199b1a666ecSBarry Smith 2200b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22019566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22029566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2203b1a666ecSBarry Smith 2204b1a666ecSBarry Smith /* local sweep */ 22059566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2206b1a666ecSBarry Smith } 2207b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2208b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22099566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2210b1a666ecSBarry Smith its--; 2211b1a666ecSBarry Smith } 2212b1a666ecSBarry Smith while (its--) { 22139566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2215b1a666ecSBarry Smith 2216b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22179566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22189566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2219b1a666ecSBarry Smith 2220b1a666ecSBarry Smith /* local sweep */ 22219566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2222b1a666ecSBarry Smith } 2223b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2224b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22259566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2226b1a666ecSBarry Smith its--; 2227b1a666ecSBarry Smith } 2228b1a666ecSBarry Smith while (its--) { 22299566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2231b1a666ecSBarry Smith 2232b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22339566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22349566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2235b1a666ecSBarry Smith 2236b1a666ecSBarry Smith /* local sweep */ 22379566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2238b1a666ecSBarry Smith } 2239ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2240b1a666ecSBarry Smith 22419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2243b1a666ecSBarry Smith } 2244b1a666ecSBarry Smith 224566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2246d71ae5a4SJacob Faibussowitsch { 224747f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2248a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 224947f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 225047f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 225147f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 225247f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 225347f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 225447f7623dSRémi Lacroix PetscReal *work; 225547f7623dSRémi Lacroix 225647f7623dSRémi Lacroix PetscFunctionBegin; 22579566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22589566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2259857cbf51SRichard Tran Mills if (type == NORM_2) { 226047f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 226147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 226447f7623dSRémi Lacroix a_val++; 226547f7623dSRémi Lacroix } 226647f7623dSRémi Lacroix } 226747f7623dSRémi Lacroix } 226847f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 227247f7623dSRémi Lacroix b_val++; 227347f7623dSRémi Lacroix } 227447f7623dSRémi Lacroix } 227547f7623dSRémi Lacroix } 2276857cbf51SRichard Tran Mills } else if (type == NORM_1) { 227747f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228047f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 228147f7623dSRémi Lacroix a_val++; 228247f7623dSRémi Lacroix } 228347f7623dSRémi Lacroix } 228447f7623dSRémi Lacroix } 228547f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228847f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 228947f7623dSRémi Lacroix b_val++; 229047f7623dSRémi Lacroix } 229147f7623dSRémi Lacroix } 229247f7623dSRémi Lacroix } 2293857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 229447f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229547f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229647f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22976497c311SBarry Smith PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb; 229847f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 229947f7623dSRémi Lacroix a_val++; 230047f7623dSRémi Lacroix } 230147f7623dSRémi Lacroix } 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 23066497c311SBarry Smith PetscInt col = garray[b_aij->j[i]] * bs + jb; 230747f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 230847f7623dSRémi Lacroix b_val++; 230947f7623dSRémi Lacroix } 231047f7623dSRémi Lacroix } 231147f7623dSRémi Lacroix } 2312857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2313a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2314a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2315a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2316857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2317a873a8cdSSam Reynolds a_val++; 2318a873a8cdSSam Reynolds } 2319a873a8cdSSam Reynolds } 2320a873a8cdSSam Reynolds } 2321a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2322a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2323a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2324857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2325a873a8cdSSam Reynolds b_val++; 2326a873a8cdSSam Reynolds } 2327a873a8cdSSam Reynolds } 2328a873a8cdSSam Reynolds } 2329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2330857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2331857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2332857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2333857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2334857cbf51SRichard Tran Mills a_val++; 2335857cbf51SRichard Tran Mills } 2336857cbf51SRichard Tran Mills } 2337857cbf51SRichard Tran Mills } 2338857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2339857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2340857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2341857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2342857cbf51SRichard Tran Mills b_val++; 2343857cbf51SRichard Tran Mills } 2344857cbf51SRichard Tran Mills } 2345857cbf51SRichard Tran Mills } 2346857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2347857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 2348*e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 234947f7623dSRémi Lacroix } else { 2350*e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 235147f7623dSRémi Lacroix } 23529566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2353857cbf51SRichard Tran Mills if (type == NORM_2) { 2354a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2355857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2356a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 235747f7623dSRémi Lacroix } 23583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235947f7623dSRémi Lacroix } 236047f7623dSRémi Lacroix 236166976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2362d71ae5a4SJacob Faibussowitsch { 2363bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2364bbead8a2SBarry Smith 2365bbead8a2SBarry Smith PetscFunctionBegin; 23669566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23677b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23687b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23697b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2371bbead8a2SBarry Smith } 2372bbead8a2SBarry Smith 237366976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2374d71ae5a4SJacob Faibussowitsch { 23757d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23766f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23777d68702bSBarry Smith 23787d68702bSBarry Smith PetscFunctionBegin; 23796f33a894SBarry Smith if (!Y->preallocated) { 23809566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23816f33a894SBarry Smith } else if (!aij->nz) { 2382b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23839566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2384b83222d8SBarry Smith aij->nonew = nonew; 23857d68702bSBarry Smith } 23869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23887d68702bSBarry Smith } 23898c7482ecSBarry Smith 239066976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2391d71ae5a4SJacob Faibussowitsch { 23923b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23933b49f96aSBarry Smith 23943b49f96aSBarry Smith PetscFunctionBegin; 23955f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23973b49f96aSBarry Smith if (d) { 23983b49f96aSBarry Smith PetscInt rstart; 23999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24003b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24013b49f96aSBarry Smith } 24023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24033b49f96aSBarry Smith } 24043b49f96aSBarry Smith 240566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2406d71ae5a4SJacob Faibussowitsch { 2407a5b7ff6bSBarry Smith PetscFunctionBegin; 2408a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2410a5b7ff6bSBarry Smith } 2411a5b7ff6bSBarry Smith 241217ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 241317ea310bSPierre Jolivet { 241417ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 241517ea310bSPierre Jolivet 241617ea310bSPierre Jolivet PetscFunctionBegin; 241717ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 241817ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 241917ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 242017ea310bSPierre Jolivet } 242117ea310bSPierre Jolivet 24223964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2423cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2424cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2425cc2dc46cSBarry Smith MatMult_MPIBAIJ, 242697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24277c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24287c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2429f4259b30SLisandro Dalcin NULL, 2430f4259b30SLisandro Dalcin NULL, 2431f4259b30SLisandro Dalcin NULL, 2432f4259b30SLisandro Dalcin /*10*/ NULL, 2433f4259b30SLisandro Dalcin NULL, 2434f4259b30SLisandro Dalcin NULL, 2435b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2436cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 243797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24387fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2439cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2440cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2441cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2443cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2444cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2445cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2446d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2447f4259b30SLisandro Dalcin NULL, 2448f4259b30SLisandro Dalcin NULL, 2449f4259b30SLisandro Dalcin NULL, 2450f4259b30SLisandro Dalcin NULL, 245126cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 2454a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2455f4259b30SLisandro Dalcin NULL, 2456d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2457f4259b30SLisandro Dalcin NULL, 2458f4259b30SLisandro Dalcin NULL, 2459f4259b30SLisandro Dalcin NULL, 2460f4259b30SLisandro Dalcin NULL, 2461d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24627dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2463cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2464cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24653c896bc6SHong Zhang MatCopy_MPIBAIJ, 2466f4259b30SLisandro Dalcin /*44*/ NULL, 2467cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24687d68702bSBarry Smith MatShift_MPIBAIJ, 2469f4259b30SLisandro Dalcin NULL, 24706f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2471f4259b30SLisandro Dalcin /*49*/ NULL, 2472f4259b30SLisandro Dalcin NULL, 2473f4259b30SLisandro Dalcin NULL, 2474f4259b30SLisandro Dalcin NULL, 2475f4259b30SLisandro Dalcin NULL, 247693dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2477f4259b30SLisandro Dalcin NULL, 2478cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 247982094794SBarry Smith MatPermute_MPIBAIJ, 2480cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24817dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2482f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2483f14a1c24SBarry Smith MatView_MPIBAIJ, 2484f4259b30SLisandro Dalcin NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin /*64*/ NULL, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin NULL, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin NULL, 2491d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin /*74*/ NULL, 2497f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin /*79*/ NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 25055bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2506f4259b30SLisandro Dalcin /*84*/ NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin /*89*/ NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin /*94*/ NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin /*99*/ NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin NULL, 25242726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin /*104*/ NULL, 252799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25288c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2529f4259b30SLisandro Dalcin NULL, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin /*109*/ NULL, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin NULL, 2534f4259b30SLisandro Dalcin NULL, 25353b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2536d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2537f4259b30SLisandro Dalcin NULL, 25384683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2539f4259b30SLisandro Dalcin NULL, 2540f4259b30SLisandro Dalcin NULL, 2541f4259b30SLisandro Dalcin /*119*/ NULL, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin NULL, 2544f4259b30SLisandro Dalcin NULL, 2545e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2546f4259b30SLisandro Dalcin /*124*/ NULL, 2547a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25483964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin /*129*/ NULL, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin /*134*/ NULL, 2557f4259b30SLisandro Dalcin NULL, 2558f4259b30SLisandro Dalcin NULL, 2559f4259b30SLisandro Dalcin NULL, 2560f4259b30SLisandro Dalcin NULL, 256146533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin NULL, 2564bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2565f4259b30SLisandro Dalcin NULL, 2566d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2567d70f29a3SPierre Jolivet NULL, 2568d70f29a3SPierre Jolivet NULL, 256999a7f59eSMark Adams NULL, 257099a7f59eSMark Adams NULL, 25717fb60732SBarry Smith NULL, 2572dec0b466SHong Zhang /*150*/ NULL, 2573eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 25744cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIBAIJ, 257542ce410bSJunchao Zhang NULL, 257642ce410bSJunchao Zhang NULL, 2577fe1fc275SAlexander /*155*/ NULL, 2578fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 257979bdfe76SSatish Balay 2580cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2581c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2582d94109b8SHong Zhang 258366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2584d71ae5a4SJacob Faibussowitsch { 2585b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2586f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2587f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2588f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2589d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25903bd0feecSPierre Jolivet PetscBool nooffprocentries; 2591aac34f13SBarry Smith 2592aac34f13SBarry Smith PetscFunctionBegin; 25939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25979566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2598d0f46423SBarry Smith m = B->rmap->n / bs; 2599d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2600d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2601d0f46423SBarry Smith cend = B->cmap->rend / bs; 2602b8d659d7SLisandro Dalcin 26035f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2605aac34f13SBarry Smith for (i = 0; i < m; i++) { 2606cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26075f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2608b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 260937cd3c0dSBarry Smith dlen = 0; 261037cd3c0dSBarry Smith olen = 0; 2611cf12db73SBarry Smith JJ = jj + ii[i]; 2612b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 261337cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261437cd3c0dSBarry Smith else dlen++; 2615aac34f13SBarry Smith JJ++; 2616aac34f13SBarry Smith } 261737cd3c0dSBarry Smith d_nnz[i] = dlen; 261837cd3c0dSBarry Smith o_nnz[i] = olen; 2619aac34f13SBarry Smith } 26209566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26219566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2622aac34f13SBarry Smith 2623b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 262448a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2625b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2626b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2627cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2628cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2629bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2630cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26319566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26323adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26333adadaf3SJed Brown PetscInt j; 26343adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26353adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26369566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26373adadaf3SJed Brown } 26383adadaf3SJed Brown } 2639aac34f13SBarry Smith } 2640aac34f13SBarry Smith 26419566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26423bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26433bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26463bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26473bd0feecSPierre Jolivet 26489566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2650aac34f13SBarry Smith } 2651aac34f13SBarry Smith 2652aac34f13SBarry Smith /*@C 265311a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2654aac34f13SBarry Smith 2655d083f849SBarry Smith Collective 2656aac34f13SBarry Smith 2657aac34f13SBarry Smith Input Parameters: 26581c4f3114SJed Brown + B - the matrix 2659dfb205c3SBarry Smith . bs - the block size 266020f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2661aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2662d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2663aac34f13SBarry Smith 2664664954b6SBarry Smith Level: advanced 2665aac34f13SBarry Smith 266695452b02SPatrick Sanan Notes: 2667d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2668d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2669d8a51d2aSBarry Smith called this routine. 2670d8a51d2aSBarry Smith 267111a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 267211a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26733adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 267411a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26753adadaf3SJed Brown block column and the second index is over columns within a block. 26763adadaf3SJed Brown 2677664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2678664954b6SBarry Smith 26797d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2680aac34f13SBarry Smith @*/ 2681d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2682d71ae5a4SJacob Faibussowitsch { 2683aac34f13SBarry Smith PetscFunctionBegin; 26846ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26856ba663aaSJed Brown PetscValidType(B, 1); 26866ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2687cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2689aac34f13SBarry Smith } 2690aac34f13SBarry Smith 2691d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2692d71ae5a4SJacob Faibussowitsch { 2693ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2694535b19f3SBarry Smith PetscInt i; 26955d2a9ed1SStefano Zampini PetscMPIInt size; 2696a23d5eceSKris Buschelman 2697a23d5eceSKris Buschelman PetscFunctionBegin; 2698ad79cf63SBarry Smith if (B->hash_active) { 2699aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2700ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2701ad79cf63SBarry Smith } 2702ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 27039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 27049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27069566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2707899cda47SBarry Smith 2708a23d5eceSKris Buschelman if (d_nnz) { 2709ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2710a23d5eceSKris Buschelman } 2711a23d5eceSKris Buschelman if (o_nnz) { 2712ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2713a23d5eceSKris Buschelman } 2714a23d5eceSKris Buschelman 2715a23d5eceSKris Buschelman b->bs2 = bs * bs; 2716d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2717d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2718d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2719d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2720a23d5eceSKris Buschelman 2721ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2722d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2723d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2724d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2725d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2726a23d5eceSKris Buschelman 2727cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2728eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2729cb7b82ddSBarry Smith #else 27309566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2731cb7b82ddSBarry Smith #endif 27329566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27349566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2735cb7b82ddSBarry Smith 27369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2737c508b908SBarry Smith 2738c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27409566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27429566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2743c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2744cb7b82ddSBarry Smith 2745c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2746ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27479566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27499566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2750c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2751a23d5eceSKris Buschelman 27529566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27539566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2754526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2755cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2756cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2758a23d5eceSKris Buschelman } 2759a23d5eceSKris Buschelman 27607087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27617087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27625bf65638SKris Buschelman 2763d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2764d71ae5a4SJacob Faibussowitsch { 276582094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 276682094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 276782094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 276882094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 276982094794SBarry Smith 277082094794SBarry Smith PetscFunctionBegin; 27719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 277282094794SBarry Smith ii[0] = 0; 277382094794SBarry Smith for (i = 0; i < M; i++) { 277408401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 277508401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 277682094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27775ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27785ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27799371c9d4SSatish Balay if (jd[j] == i) { 27809371c9d4SSatish Balay ii[i + 1]--; 27819371c9d4SSatish Balay break; 27829371c9d4SSatish Balay } 27835ee9ba1cSJed Brown } 278482094794SBarry Smith } 27859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 278682094794SBarry Smith cnt = 0; 278782094794SBarry Smith for (i = 0; i < M; i++) { 278882094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 278982094794SBarry Smith if (garray[jo[j]] > rstart) break; 279082094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279182094794SBarry Smith } 279282094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2793ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 279482094794SBarry Smith } 2795ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 279682094794SBarry Smith } 27979566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279982094794SBarry Smith } 280082094794SBarry Smith 2801c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 280262471d69SBarry Smith 2803cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2804b2573a8aSBarry Smith 2805d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2806d71ae5a4SJacob Faibussowitsch { 280762471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 280885a69837SSatish Balay Mat_MPIAIJ *b; 28095f80ce2aSJacob Faibussowitsch Mat B; 281062471d69SBarry Smith 281162471d69SBarry Smith PetscFunctionBegin; 28125f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 281362471d69SBarry Smith 28140f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28150f6d62edSLisandro Dalcin B = *newmat; 28160f6d62edSLisandro Dalcin } else { 28179566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28189566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28209566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28230f6d62edSLisandro Dalcin } 282462471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 282562471d69SBarry Smith 28260f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28279566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28289566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28290f6d62edSLisandro Dalcin } else { 28307c612885SStefano Zampini PetscInt *garray = a->garray; 28317c612885SStefano Zampini Mat_SeqAIJ *bB; 28327c612885SStefano Zampini PetscInt bs, nnz; 28339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28357c612885SStefano Zampini /* just clear out the data structure */ 2836eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE)); 28379566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28389566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28397c612885SStefano Zampini 28407c612885SStefano Zampini /* Global numbering for b->B columns */ 28417c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28427c612885SStefano Zampini bs = A->rmap->bs; 28437c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28447c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28457c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28467c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28477c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28487c612885SStefano Zampini } 28490f6d62edSLisandro Dalcin } 28509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28520f6d62edSLisandro Dalcin 2853511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28549566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 285562471d69SBarry Smith } else { 285662471d69SBarry Smith *newmat = B; 285762471d69SBarry Smith } 28583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285962471d69SBarry Smith } 286062471d69SBarry Smith 28610bad9183SKris Buschelman /*MC 2862fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28630bad9183SKris Buschelman 28640bad9183SKris Buschelman Options Database Keys: 286511a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28668c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28676679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 286867b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28690bad9183SKris Buschelman 28700bad9183SKris Buschelman Level: beginner 28710cd7f59aSBarry Smith 287211a5261eSBarry Smith Note: 28735e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 287411a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28750bad9183SKris Buschelman 28765e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28770bad9183SKris Buschelman M*/ 28780bad9183SKris Buschelman 2879cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2880c0cdd4a1SDahai Guo 2881d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2882d71ae5a4SJacob Faibussowitsch { 2883273d9f13SBarry Smith Mat_MPIBAIJ *b; 288494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2885273d9f13SBarry Smith 2886273d9f13SBarry Smith PetscFunctionBegin; 28874dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 288882502324SSatish Balay B->data = (void *)b; 2889aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2890273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2891273d9f13SBarry Smith 2892273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2895273d9f13SBarry Smith 2896273d9f13SBarry Smith /* build local table of row and column ownerships */ 28979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2898273d9f13SBarry Smith 2899273d9f13SBarry Smith /* build cache for off array entries formed */ 29009566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 290126fbe8dcSKarl Rupp 2902273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 29030298fd71SBarry Smith b->colmap = NULL; 29040298fd71SBarry Smith b->garray = NULL; 2905273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2906273d9f13SBarry Smith 2907273d9f13SBarry Smith /* stuff used in block assembly */ 2908f4259b30SLisandro Dalcin b->barray = NULL; 2909273d9f13SBarry Smith 2910273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2911f4259b30SLisandro Dalcin b->lvec = NULL; 2912f4259b30SLisandro Dalcin b->Mvctx = NULL; 2913273d9f13SBarry Smith 2914273d9f13SBarry Smith /* stuff for MatGetRow() */ 2915f4259b30SLisandro Dalcin b->rowindices = NULL; 2916f4259b30SLisandro Dalcin b->rowvalues = NULL; 2917273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2918273d9f13SBarry Smith 2919273d9f13SBarry Smith /* hash table stuff */ 2920f4259b30SLisandro Dalcin b->ht = NULL; 2921f4259b30SLisandro Dalcin b->hd = NULL; 2922273d9f13SBarry Smith b->ht_size = 0; 2923273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2924273d9f13SBarry Smith b->ht_fact = 0; 2925273d9f13SBarry Smith b->ht_total_ct = 0; 2926273d9f13SBarry Smith b->ht_insert_ct = 0; 2927273d9f13SBarry Smith 29287dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29297a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29307a868f3eSHong Zhang 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29347ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29367ea3e4caSstefano_zampini #endif 29379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29449566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 294594ae4db5SBarry Smith 2946d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29479566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 294894ae4db5SBarry Smith if (flg) { 294994ae4db5SBarry Smith PetscReal fact = 1.39; 29509566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29519566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 295294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29539566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29549566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 295594ae4db5SBarry Smith } 2956d0609cedSBarry Smith PetscOptionsEnd(); 29573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2958273d9f13SBarry Smith } 2959273d9f13SBarry Smith 29602920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2961209238afSKris Buschelman /*MC 2962002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2963209238afSKris Buschelman 296411a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 296511a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2966209238afSKris Buschelman 2967209238afSKris Buschelman Options Database Keys: 296811a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2969209238afSKris Buschelman 2970209238afSKris Buschelman Level: beginner 2971209238afSKris Buschelman 297267be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2973209238afSKris Buschelman M*/ 2974209238afSKris Buschelman 29755d83a8b1SBarry Smith /*@ 297611a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 297767be906fSBarry Smith (block compressed row). 2978273d9f13SBarry Smith 2979c3339decSBarry Smith Collective 2980273d9f13SBarry Smith 2981273d9f13SBarry Smith Input Parameters: 29821c4f3114SJed Brown + B - the matrix 298311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 298467be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2985273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2986273d9f13SBarry Smith submatrix (same for all local rows) 2987273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2988273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 298967be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 299095742e49SBarry Smith set it even if it is zero. 2991273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2992273d9f13SBarry Smith submatrix (same for all local rows). 2993273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2994273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 299567be906fSBarry Smith each block row) or `NULL`. 2996273d9f13SBarry Smith 299749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2998273d9f13SBarry Smith 2999273d9f13SBarry Smith Options Database Keys: 30008c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 300167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 3002273d9f13SBarry Smith 300367be906fSBarry Smith Level: intermediate 300467be906fSBarry Smith 3005273d9f13SBarry Smith Notes: 300667be906fSBarry Smith For good matrix assembly performance 300767be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 300867be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 300967be906fSBarry Smith performance can be increased by more than a factor of 50. 301067be906fSBarry Smith 301111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3012273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3013273d9f13SBarry Smith 3014273d9f13SBarry Smith Storage Information: 3015273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3016273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3017273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3018273d9f13SBarry Smith local matrix (a rectangular submatrix). 3019273d9f13SBarry Smith 3020273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 302167be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 302267be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3023273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 302467be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3025273d9f13SBarry Smith 3026273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3027273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3028273d9f13SBarry Smith 3029273d9f13SBarry Smith .vb 3030273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3031a4b1a0f6SJed Brown -------------------------- 3032273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3033273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3034273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3035a4b1a0f6SJed Brown -------------------------- 3036273d9f13SBarry Smith .ve 3037273d9f13SBarry Smith 3038273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3039273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3040273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 304111a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3042273d9f13SBarry Smith 304367be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 304467be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3045273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 304620f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3047273d9f13SBarry Smith 304811a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3049aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 305067be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3051aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3052aa95bbe8SBarry Smith 305367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3054273d9f13SBarry Smith @*/ 3055d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3056d71ae5a4SJacob Faibussowitsch { 3057273d9f13SBarry Smith PetscFunctionBegin; 30586ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30596ba663aaSJed Brown PetscValidType(B, 1); 30606ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3061cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3063273d9f13SBarry Smith } 3064273d9f13SBarry Smith 30652920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 30665d83a8b1SBarry Smith /*@ 306711a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 306867be906fSBarry Smith (block compressed row). 306979bdfe76SSatish Balay 3070d083f849SBarry Smith Collective 3071db81eaa0SLois Curfman McInnes 307279bdfe76SSatish Balay Input Parameters: 3073db81eaa0SLois Curfman McInnes + comm - MPI communicator 307411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 307511a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 307611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 307792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 307911a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 308092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 308211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 308311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 308447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 308579bdfe76SSatish Balay submatrix (same for all local rows) 308647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 308792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30880298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 308995742e49SBarry Smith and set it even if it is zero. 309047a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 309179bdfe76SSatish Balay submatrix (same for all local rows). 309247a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 309392e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30940298fd71SBarry Smith each block row) or NULL. 309579bdfe76SSatish Balay 309679bdfe76SSatish Balay Output Parameter: 309779bdfe76SSatish Balay . A - the matrix 309879bdfe76SSatish Balay 3099db81eaa0SLois Curfman McInnes Options Database Keys: 31008c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 310167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 31023ffaccefSLois Curfman McInnes 310367be906fSBarry Smith Level: intermediate 310467be906fSBarry Smith 310567be906fSBarry Smith Notes: 310677433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 310777433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 310877433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 310977433607SBarry Smith 311067be906fSBarry Smith For good matrix assembly performance 311167be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 311267be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 311367be906fSBarry Smith performance can be increased by more than a factor of 50. 311467be906fSBarry Smith 311549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 311649a6f317SBarry Smith 311747a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 311847a75d0bSBarry Smith 311979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 312079bdfe76SSatish Balay (possibly both). 312179bdfe76SSatish Balay 312211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3123be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3124be79a94dSBarry Smith 3125727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3126727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3127727bdf9bSBarry Smith 312879bdfe76SSatish Balay Storage Information: 312979bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 313079bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 313179bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 313279bdfe76SSatish Balay local matrix (a rectangular submatrix). 313379bdfe76SSatish Balay 313479bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 313579bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 313667be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 313779bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 313867be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 313979bdfe76SSatish Balay 314079bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 314179bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 314279bdfe76SSatish Balay 3143db81eaa0SLois Curfman McInnes .vb 3144db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3145a4b1a0f6SJed Brown -------------------------- 3146db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3147db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3148db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3149a4b1a0f6SJed Brown -------------------------- 3150db81eaa0SLois Curfman McInnes .ve 315179bdfe76SSatish Balay 315279bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 315379bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315479bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 315511a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 315679bdfe76SSatish Balay 315767be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 315867be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 315979bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 316020f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 316179bdfe76SSatish Balay 3162727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3163727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 316479bdfe76SSatish Balay @*/ 3165d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3166d71ae5a4SJacob Faibussowitsch { 3167b24ad042SBarry Smith PetscMPIInt size; 316879bdfe76SSatish Balay 3169d64ed03dSBarry Smith PetscFunctionBegin; 31709566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3173273d9f13SBarry Smith if (size > 1) { 31749566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31759566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3176273d9f13SBarry Smith } else { 31779566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31789566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31793914022bSBarry Smith } 31803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 318179bdfe76SSatish Balay } 3182026e39d0SSatish Balay 3183d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3184d71ae5a4SJacob Faibussowitsch { 31850ac07820SSatish Balay Mat mat; 31860ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3187b24ad042SBarry Smith PetscInt len = 0; 31880ac07820SSatish Balay 3189d64ed03dSBarry Smith PetscFunctionBegin; 3190f4259b30SLisandro Dalcin *newmat = NULL; 31919566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31939566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31947fff6886SHong Zhang 3195420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3196420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3197420957c1SBarry Smith if (matin->hash_active) { 3198420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3199420957c1SBarry Smith } else { 3200d5f3da31SBarry Smith mat->factortype = matin->factortype; 3201273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32020ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32037fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32047fff6886SHong Zhang 3205273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3206d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32070ac07820SSatish Balay a->bs2 = oldmat->bs2; 32080ac07820SSatish Balay a->mbs = oldmat->mbs; 32090ac07820SSatish Balay a->nbs = oldmat->nbs; 32100ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32110ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32120ac07820SSatish Balay 32130ac07820SSatish Balay a->size = oldmat->size; 32140ac07820SSatish Balay a->rank = oldmat->rank; 3215aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3216aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3217f4259b30SLisandro Dalcin a->rowindices = NULL; 3218f4259b30SLisandro Dalcin a->rowvalues = NULL; 32190ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3220f4259b30SLisandro Dalcin a->barray = NULL; 3221899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3222899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3223899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3224899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32250ac07820SSatish Balay 3226133cdb44SSatish Balay /* hash table stuff */ 3227f4259b30SLisandro Dalcin a->ht = NULL; 3228f4259b30SLisandro Dalcin a->hd = NULL; 3229133cdb44SSatish Balay a->ht_size = 0; 3230133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 323125fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3232133cdb44SSatish Balay a->ht_total_ct = 0; 3233133cdb44SSatish Balay a->ht_insert_ct = 0; 3234133cdb44SSatish Balay 32359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32360ac07820SSatish Balay if (oldmat->colmap) { 3237aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3238eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 323948e59246SSatish Balay #else 32409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 324248e59246SSatish Balay #endif 3243f4259b30SLisandro Dalcin } else a->colmap = NULL; 32444beb1cfeSHong Zhang 3245f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32479566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3248f4259b30SLisandro Dalcin } else a->garray = NULL; 32490ac07820SSatish Balay 32509566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32519566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32529566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32537fff6886SHong Zhang 32549566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32559566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3256420957c1SBarry Smith } 32579566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32580ac07820SSatish Balay *newmat = mat; 32593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32600ac07820SSatish Balay } 326157b952d6SSatish Balay 3262618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3263d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3264d71ae5a4SJacob Faibussowitsch { 3265b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3266b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3267b51a4376SLisandro Dalcin PetscScalar *matvals; 3268b51a4376SLisandro Dalcin 3269b51a4376SLisandro Dalcin PetscFunctionBegin; 32709566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3271b51a4376SLisandro Dalcin 3272b51a4376SLisandro Dalcin /* read in matrix header */ 32739566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32745f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32759371c9d4SSatish Balay M = header[1]; 32769371c9d4SSatish Balay N = header[2]; 32779371c9d4SSatish Balay nz = header[3]; 32785f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32795f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32805f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3281b51a4376SLisandro Dalcin 3282b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32839566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3284618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3285618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3286618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3287b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3288b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3289b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3292b51a4376SLisandro Dalcin 3293b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32949566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32955f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32969566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32989566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32999566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 33009371c9d4SSatish Balay mbs = m / bs; 33019371c9d4SSatish Balay nbs = n / bs; 3302b51a4376SLisandro Dalcin 3303b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 33049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 33059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 33069371c9d4SSatish Balay rowidxs[0] = 0; 33079371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3308462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 33095f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3310b51a4376SLisandro Dalcin 3311b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 33129566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 33139566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 33149566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3315b51a4376SLisandro Dalcin 3316b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3317b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3318b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3319618cc2edSLisandro Dalcin PetscBool sbaij, done; 3320b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3321b51a4376SLisandro Dalcin 33229566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33239566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33249566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3326b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33279566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33289566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3329618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3330618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3331618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3332618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3333618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3334618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3335618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3336b51a4376SLisandro Dalcin } else { 33379566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3338b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3339b51a4376SLisandro Dalcin } 3340b51a4376SLisandro Dalcin } 3341618cc2edSLisandro Dalcin } 3342618cc2edSLisandro Dalcin } 3343618cc2edSLisandro Dalcin } 33449566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33459566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33469566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33479566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33489566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3349b51a4376SLisandro Dalcin } 3350b51a4376SLisandro Dalcin 3351b51a4376SLisandro Dalcin /* store matrix values */ 3352b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3353b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33549927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3355b51a4376SLisandro Dalcin } 3356b51a4376SLisandro Dalcin 33579566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33589566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3362b51a4376SLisandro Dalcin } 3363b51a4376SLisandro Dalcin 3364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3365d71ae5a4SJacob Faibussowitsch { 33667f489da9SVaclav Hapla PetscBool isbinary; 33674683f7a4SShri Abhyankar 33684683f7a4SShri Abhyankar PetscFunctionBegin; 33699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33705f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33719566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33734683f7a4SShri Abhyankar } 33744683f7a4SShri Abhyankar 3375133cdb44SSatish Balay /*@ 337611a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3377133cdb44SSatish Balay 3378133cdb44SSatish Balay Input Parameters: 3379a2b725a8SWilliam Gropp + mat - the matrix 3380a2b725a8SWilliam Gropp - fact - factor 3381133cdb44SSatish Balay 338211a5261eSBarry Smith Options Database Key: 338311a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3384fee21e36SBarry Smith 33858c890885SBarry Smith Level: advanced 33868c890885SBarry Smith 338767be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3388133cdb44SSatish Balay @*/ 3389d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3390d71ae5a4SJacob Faibussowitsch { 33915bf65638SKris Buschelman PetscFunctionBegin; 3392cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33945bf65638SKris Buschelman } 33955bf65638SKris Buschelman 3396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3397d71ae5a4SJacob Faibussowitsch { 339825fdafccSSatish Balay Mat_MPIBAIJ *baij; 3399133cdb44SSatish Balay 3400133cdb44SSatish Balay PetscFunctionBegin; 3401133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3402133cdb44SSatish Balay baij->ht_fact = fact; 34033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3404133cdb44SSatish Balay } 3405f2a5309cSSatish Balay 3406d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3407d71ae5a4SJacob Faibussowitsch { 3408f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3409ab4d48faSStefano Zampini PetscBool flg; 34105fd66863SKarl Rupp 3411f2a5309cSSatish Balay PetscFunctionBegin; 34129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 34135f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 341421e72a00SBarry Smith if (Ad) *Ad = a->A; 341521e72a00SBarry Smith if (Ao) *Ao = a->B; 341621e72a00SBarry Smith if (colmap) *colmap = a->garray; 34173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3418f2a5309cSSatish Balay } 341985535b8eSBarry Smith 342085535b8eSBarry Smith /* 342185535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 342285535b8eSBarry Smith */ 342385535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 342485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 342585535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 342685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 342785535b8eSBarry Smith #endif 342885535b8eSBarry Smith 34292920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 343085535b8eSBarry Smith /*@C 343111a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 343285535b8eSBarry Smith 3433c3339decSBarry Smith Collective 343485535b8eSBarry Smith 343585535b8eSBarry Smith Input Parameters: 3436fe59aa6dSJacob Faibussowitsch + matin - the matrix 343785535b8eSBarry Smith . min - number of input rows 343885535b8eSBarry Smith . im - input rows 343985535b8eSBarry Smith . nin - number of input columns 344085535b8eSBarry Smith . in - input columns 344185535b8eSBarry Smith . v - numerical values input 344211a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 344385535b8eSBarry Smith 344420f4b53cSBarry Smith Level: advanced 344520f4b53cSBarry Smith 3446fe59aa6dSJacob Faibussowitsch Developer Notes: 344711a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 344885535b8eSBarry Smith 344967be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 345085535b8eSBarry Smith @*/ 345166976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3452d71ae5a4SJacob Faibussowitsch { 345385535b8eSBarry Smith /* convert input arguments to C version */ 345485535b8eSBarry Smith Mat mat = *matin; 345585535b8eSBarry Smith PetscInt m = *min, n = *nin; 345685535b8eSBarry Smith InsertMode addv = *addvin; 345785535b8eSBarry Smith 345885535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 345985535b8eSBarry Smith const MatScalar *value; 346085535b8eSBarry Smith MatScalar *barray = baij->barray; 3461ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 346285535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 346385535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3464d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 346585535b8eSBarry Smith 346685535b8eSBarry Smith PetscFunctionBegin; 346785535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 346826fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34695f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34705f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 347185535b8eSBarry Smith if (mat->assembled) { 347285535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 347385535b8eSBarry Smith mat->assembled = PETSC_FALSE; 347485535b8eSBarry Smith } 34759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 347685535b8eSBarry Smith 347785535b8eSBarry Smith if (!barray) { 34789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 347985535b8eSBarry Smith baij->barray = barray; 348085535b8eSBarry Smith } 348185535b8eSBarry Smith 348226fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 348326fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 348426fbe8dcSKarl Rupp 348585535b8eSBarry Smith for (i = 0; i < m; i++) { 348685535b8eSBarry Smith if (im[i] < 0) continue; 34876bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 348885535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 348985535b8eSBarry Smith row = im[i] - rstart; 349085535b8eSBarry Smith for (j = 0; j < n; j++) { 349185535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 349285535b8eSBarry Smith if ((roworiented) && (n == 1)) { 349385535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 349485535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 349585535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 349685535b8eSBarry Smith } else { /* Here a copy is required */ 349785535b8eSBarry Smith if (roworiented) { 349885535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 349985535b8eSBarry Smith } else { 350085535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 350185535b8eSBarry Smith } 350285535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3503ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 350485535b8eSBarry Smith } 350585535b8eSBarry Smith barray -= bs2; 350685535b8eSBarry Smith } 350785535b8eSBarry Smith 350885535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 350985535b8eSBarry Smith col = in[j] - cstart; 35109566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3511f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3512f7d195e4SLawrence Mitchell continue; 3513f7d195e4SLawrence Mitchell } else { 3514f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 351585535b8eSBarry Smith if (mat->was_assembled) { 351648a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 351785535b8eSBarry Smith 351885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 351985535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35209371c9d4SSatish Balay { 35219371c9d4SSatish Balay PetscInt data; 3522eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 352308401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 352485535b8eSBarry Smith } 352585535b8eSBarry Smith #else 352608401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 352785535b8eSBarry Smith #endif 352885535b8eSBarry Smith #endif 352985535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3530eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 353185535b8eSBarry Smith col = (col - 1) / bs; 353285535b8eSBarry Smith #else 353385535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 353485535b8eSBarry Smith #endif 3535f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35369566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 353785535b8eSBarry Smith col = in[j]; 353885535b8eSBarry Smith } 353926fbe8dcSKarl Rupp } else col = in[j]; 35409566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 354185535b8eSBarry Smith } 354285535b8eSBarry Smith } 354385535b8eSBarry Smith } else { 354485535b8eSBarry Smith if (!baij->donotstash) { 354585535b8eSBarry Smith if (roworiented) { 35469566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 354785535b8eSBarry Smith } else { 35489566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 354985535b8eSBarry Smith } 355085535b8eSBarry Smith } 355185535b8eSBarry Smith } 355285535b8eSBarry Smith } 355385535b8eSBarry Smith 355485535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35559566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355785535b8eSBarry Smith } 3558dfb205c3SBarry Smith 3559dfb205c3SBarry Smith /*@ 3560d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3561dfb205c3SBarry Smith 3562d083f849SBarry Smith Collective 3563dfb205c3SBarry Smith 3564dfb205c3SBarry Smith Input Parameters: 3565dfb205c3SBarry Smith + comm - MPI communicator 3566dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 356711a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3568dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3569d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3570d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3571d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3572d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3573483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3574dfb205c3SBarry Smith . j - column indices 3575dfb205c3SBarry Smith - a - matrix values 3576dfb205c3SBarry Smith 3577dfb205c3SBarry Smith Output Parameter: 3578dfb205c3SBarry Smith . mat - the matrix 3579dfb205c3SBarry Smith 3580dfb205c3SBarry Smith Level: intermediate 3581dfb205c3SBarry Smith 3582dfb205c3SBarry Smith Notes: 358367be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3584dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 358511a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3586dfb205c3SBarry Smith 35873adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35883adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35893adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35903adadaf3SJed Brown with column-major ordering within blocks. 35913adadaf3SJed Brown 3592d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3593dfb205c3SBarry Smith 359467be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35957d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3596dfb205c3SBarry Smith @*/ 3597d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3598d71ae5a4SJacob Faibussowitsch { 3599dfb205c3SBarry Smith PetscFunctionBegin; 36005f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 36015f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 36029566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 36039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 36049566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 36059566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 36069566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 36079566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 36089566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 36099566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 36103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3611dfb205c3SBarry Smith } 3612e561ad89SHong Zhang 3613d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3614d71ae5a4SJacob Faibussowitsch { 3615bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3616bd153df0SHong Zhang PetscInt *indx; 3617bd153df0SHong Zhang PetscScalar *values; 3618e561ad89SHong Zhang 3619e561ad89SHong Zhang PetscFunctionBegin; 36209566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3621bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3622bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36232c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3624bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 362577f764caSHong Zhang PetscMPIInt rank, size; 3626e561ad89SHong Zhang 36279566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36289371c9d4SSatish Balay mbs = m / bs; 36299371c9d4SSatish Balay Nbs = N / cbs; 363048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3631da91a574SPierre Jolivet nbs = n / cbs; 3632e561ad89SHong Zhang 36339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3634d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 363577f764caSHong Zhang 36369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 363877f764caSHong Zhang if (rank == size - 1) { 363977f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36405f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 364177f764caSHong Zhang } 364277f764caSHong Zhang 3643d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3644bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36459566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3646647a6520SHong Zhang nnz = nnz / bs; 3647647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36489566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36499566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3650e561ad89SHong Zhang } 36519566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3652e561ad89SHong Zhang 36539566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36559566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36569566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36579566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36589566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3659d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36609566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3661e561ad89SHong Zhang } 3662e561ad89SHong Zhang 3663bd153df0SHong Zhang /* numeric phase */ 36649566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36659566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3666e561ad89SHong Zhang 3667e561ad89SHong Zhang for (i = 0; i < m; i++) { 36689566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3669e561ad89SHong Zhang Ii = i + rstart; 36709566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36719566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3672e561ad89SHong Zhang } 36739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3676e561ad89SHong Zhang } 3677