179bdfe76SSatish Balay #ifndef lint 2*eada6651SSatish Balay static char vcid[] = "$Id: mpibaij.c,v 1.47 1997/01/13 17:27:40 balay Exp balay $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 570f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" 6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 779bdfe76SSatish Balay 857b952d6SSatish Balay #include "draw.h" 957b952d6SSatish Balay #include "pinclude/pviewer.h" 1057b952d6SSatish Balay 1157b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1257b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 13d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 14d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **); 1593bc47c4SSatish Balay extern int MatLUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,Mat *); 1693bc47c4SSatish Balay extern int MatLUFactorNumeric_MPIBAIJ(Mat,Mat *); 1793bc47c4SSatish Balay extern int MatLUFactor_MPIBAIJ(Mat,IS,IS,double); 1893bc47c4SSatish Balay extern int MatSolve_MPIBAIJ(Mat,Vec,Vec); 1993bc47c4SSatish Balay extern int MatSolveAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 2093bc47c4SSatish Balay extern int MatSolveTrans_MPIBAIJ(Mat,Vec,Vec); 2193bc47c4SSatish Balay extern int MatSolveTransAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 2293bc47c4SSatish Balay extern int MatILUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,int,Mat *); 2357b952d6SSatish Balay 243b2fbd54SBarry Smith 25537820f0SBarry Smith /* 26537820f0SBarry Smith Local utility routine that creates a mapping from the global column 2757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 2857b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 2957b952d6SSatish Balay length of colmap equals the global matrix length. 3057b952d6SSatish Balay */ 315615d1e5SSatish Balay #undef __FUNC__ 325615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 3357b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 3457b952d6SSatish Balay { 3557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 37928fc39bSSatish Balay int nbs = B->nbs,i,bs=B->bs;; 3857b952d6SSatish Balay 3957b952d6SSatish Balay baij->colmap = (int *) PetscMalloc(baij->Nbs*sizeof(int));CHKPTRQ(baij->colmap); 4057b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 4157b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 42928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 4357b952d6SSatish Balay return 0; 4457b952d6SSatish Balay } 4557b952d6SSatish Balay 465615d1e5SSatish Balay #undef __FUNC__ 475615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_MPIBAIJ(" 483b2fbd54SBarry Smith static int MatGetRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 493b2fbd54SBarry Smith PetscTruth *done) 5057b952d6SSatish Balay { 513b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 5257b952d6SSatish Balay int ierr; 533b2fbd54SBarry Smith if (aij->size == 1) { 543b2fbd54SBarry Smith ierr = MatGetRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 55e3372554SBarry Smith } else SETERRQ(1,0,"not supported in parallel"); 563b2fbd54SBarry Smith return 0; 573b2fbd54SBarry Smith } 583b2fbd54SBarry Smith 595615d1e5SSatish Balay #undef __FUNC__ 605615d1e5SSatish Balay #define __FUNC__ "MatRestoreRowIJ_MPIBAIJ" 613b2fbd54SBarry Smith static int MatRestoreRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 623b2fbd54SBarry Smith PetscTruth *done) 633b2fbd54SBarry Smith { 643b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 653b2fbd54SBarry Smith int ierr; 663b2fbd54SBarry Smith if (aij->size == 1) { 673b2fbd54SBarry Smith ierr = MatRestoreRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 68e3372554SBarry Smith } else SETERRQ(1,0,"not supported in parallel"); 6957b952d6SSatish Balay return 0; 7057b952d6SSatish Balay } 7180c1aa95SSatish Balay #define CHUNKSIZE 10 7280c1aa95SSatish Balay 73*eada6651SSatish Balay #define MatSetValues_SeqBAIJ_A_Private( row, col, value) \ 7480c1aa95SSatish Balay { \ 7580c1aa95SSatish Balay \ 7680c1aa95SSatish Balay brow = row/bs; \ 7780c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 7880c1aa95SSatish Balay rmax = imax[brow]; nrow = ailen[brow]; \ 7980c1aa95SSatish Balay bcol = col/bs; \ 8080c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 8180c1aa95SSatish Balay for ( _i=0; _i<nrow; _i++ ) { \ 8280c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 8380c1aa95SSatish Balay if (rp[_i] == bcol) { \ 8480c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 85*eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 86*eada6651SSatish Balay else *bap = value; \ 8780c1aa95SSatish Balay goto _noinsert; \ 8880c1aa95SSatish Balay } \ 8980c1aa95SSatish Balay } \ 9080c1aa95SSatish Balay if (nrow >= rmax) { \ 9180c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 9280c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 9380c1aa95SSatish Balay Scalar *new_a; \ 9480c1aa95SSatish Balay \ 9580c1aa95SSatish Balay /* malloc new storage space */ \ 9680c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 9780c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 9880c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 9980c1aa95SSatish Balay new_i = new_j + new_nz; \ 10080c1aa95SSatish Balay \ 10180c1aa95SSatish Balay /* copy over old data into new slots */ \ 10280c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 10380c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 10480c1aa95SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \ 10580c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 10680c1aa95SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 10780c1aa95SSatish Balay len*sizeof(int)); \ 10880c1aa95SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \ 10980c1aa95SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 11080c1aa95SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 11180c1aa95SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); \ 11280c1aa95SSatish Balay /* free up old matrix storage */ \ 11380c1aa95SSatish Balay PetscFree(a->a); \ 11480c1aa95SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 11580c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 11680c1aa95SSatish Balay a->singlemalloc = 1; \ 11780c1aa95SSatish Balay \ 11880c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 11980c1aa95SSatish Balay rmax = imax[brow] = imax[brow] + CHUNKSIZE; \ 12080c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 12180c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 12280c1aa95SSatish Balay a->reallocs++; \ 12380c1aa95SSatish Balay a->nz++; \ 12480c1aa95SSatish Balay } \ 12580c1aa95SSatish Balay N = nrow++ - 1; \ 12680c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 12780c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 12880c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 12980c1aa95SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 13080c1aa95SSatish Balay } \ 13180c1aa95SSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 13280c1aa95SSatish Balay rp[_i] = bcol; \ 13380c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 13480c1aa95SSatish Balay _noinsert:; \ 13580c1aa95SSatish Balay ailen[brow] = nrow; \ 13680c1aa95SSatish Balay } 13757b952d6SSatish Balay 138639f9d9dSBarry Smith extern int MatSetValues_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 1395615d1e5SSatish Balay #undef __FUNC__ 1405615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 14157b952d6SSatish Balay static int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 14257b952d6SSatish Balay { 14357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 14457b952d6SSatish Balay Scalar value; 1454fa0d573SSatish Balay int ierr,i,j,row,col; 1464fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 1474fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 1484fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 14957b952d6SSatish Balay 150*eada6651SSatish Balay /* Some Variables required in the macro */ 15180c1aa95SSatish Balay Mat A = baij->A; 15280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 15380c1aa95SSatish Balay int *rp,ii,nrow,_i,rmax,N; 15480c1aa95SSatish Balay int *imax=a->imax,*ai=a->i,*ailen=a->ilen; 15580c1aa95SSatish Balay int *aj=a->j,brow,bcol; 15680c1aa95SSatish Balay int ridx,cidx,bs2=a->bs2; 15780c1aa95SSatish Balay Scalar *ap,*aa=a->a,*bap; 15880c1aa95SSatish Balay 1592c3acbe9SBarry Smith #if defined(PETSC_BOPT_g) 16057b952d6SSatish Balay if (baij->insertmode != NOT_SET_VALUES && baij->insertmode != addv) { 161e3372554SBarry Smith SETERRQ(1,0,"Cannot mix inserts and adds"); 16257b952d6SSatish Balay } 1632c3acbe9SBarry Smith #endif 16457b952d6SSatish Balay baij->insertmode = addv; 16557b952d6SSatish Balay for ( i=0; i<m; i++ ) { 166639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 167e3372554SBarry Smith if (im[i] < 0) SETERRQ(1,0,"Negative row"); 168e3372554SBarry Smith if (im[i] >= baij->M) SETERRQ(1,0,"Row too large"); 169639f9d9dSBarry Smith #endif 17057b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 17157b952d6SSatish Balay row = im[i] - rstart_orig; 17257b952d6SSatish Balay for ( j=0; j<n; j++ ) { 17357b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 17457b952d6SSatish Balay col = in[j] - cstart_orig; 17557b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 176*eada6651SSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value); 17780c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 17857b952d6SSatish Balay } 179639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 180e3372554SBarry Smith else if (in[j] < 0) {SETERRQ(1,0,"Negative column");} 181e3372554SBarry Smith else if (in[j] >= baij->N) {SETERRQ(1,0,"Col too large");} 182639f9d9dSBarry Smith #endif 18357b952d6SSatish Balay else { 18457b952d6SSatish Balay if (mat->was_assembled) { 185905e6a2fSBarry Smith if (!baij->colmap) { 186905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 187905e6a2fSBarry Smith } 188905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 18957b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 19057b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 19157b952d6SSatish Balay col = in[j]; 19257b952d6SSatish Balay } 19357b952d6SSatish Balay } 19457b952d6SSatish Balay else col = in[j]; 19557b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 196639f9d9dSBarry Smith ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 19757b952d6SSatish Balay } 19857b952d6SSatish Balay } 19957b952d6SSatish Balay } 20057b952d6SSatish Balay else { 20190f02eecSBarry Smith if (roworiented && !baij->donotstash) { 20257b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 20357b952d6SSatish Balay } 20457b952d6SSatish Balay else { 20590f02eecSBarry Smith if (!baij->donotstash) { 20657b952d6SSatish Balay row = im[i]; 20757b952d6SSatish Balay for ( j=0; j<n; j++ ) { 20857b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 20957b952d6SSatish Balay } 21057b952d6SSatish Balay } 21157b952d6SSatish Balay } 21257b952d6SSatish Balay } 21390f02eecSBarry Smith } 21457b952d6SSatish Balay return 0; 21557b952d6SSatish Balay } 21657b952d6SSatish Balay 2175615d1e5SSatish Balay #undef __FUNC__ 2185615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 219d6de1c52SSatish Balay static int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 220d6de1c52SSatish Balay { 221d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 222d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 223d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 224d6de1c52SSatish Balay 225d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 226e3372554SBarry Smith if (idxm[i] < 0) SETERRQ(1,0,"Negative row"); 227e3372554SBarry Smith if (idxm[i] >= baij->M) SETERRQ(1,0,"Row too large"); 228d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 229d6de1c52SSatish Balay row = idxm[i] - bsrstart; 230d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 231e3372554SBarry Smith if (idxn[j] < 0) SETERRQ(1,0,"Negative column"); 232e3372554SBarry Smith if (idxn[j] >= baij->N) SETERRQ(1,0,"Col too large"); 233d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 234d6de1c52SSatish Balay col = idxn[j] - bscstart; 235d6de1c52SSatish Balay ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 236d6de1c52SSatish Balay } 237d6de1c52SSatish Balay else { 238905e6a2fSBarry Smith if (!baij->colmap) { 239905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 240905e6a2fSBarry Smith } 241e60e1c95SSatish Balay if((baij->colmap[idxn[j]/bs]-1 < 0) || 242dcb20de4SSatish Balay (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 243d9d09a02SSatish Balay else { 244dcb20de4SSatish Balay col = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs; 245d6de1c52SSatish Balay ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 246d6de1c52SSatish Balay } 247d6de1c52SSatish Balay } 248d6de1c52SSatish Balay } 249d9d09a02SSatish Balay } 250d6de1c52SSatish Balay else { 251e3372554SBarry Smith SETERRQ(1,0,"Only local values currently supported"); 252d6de1c52SSatish Balay } 253d6de1c52SSatish Balay } 254d6de1c52SSatish Balay return 0; 255d6de1c52SSatish Balay } 256d6de1c52SSatish Balay 2575615d1e5SSatish Balay #undef __FUNC__ 2585615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 259d6de1c52SSatish Balay static int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 260d6de1c52SSatish Balay { 261d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 262d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 263acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 264d6de1c52SSatish Balay double sum = 0.0; 265d6de1c52SSatish Balay Scalar *v; 266d6de1c52SSatish Balay 267d6de1c52SSatish Balay if (baij->size == 1) { 268d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 269d6de1c52SSatish Balay } else { 270d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 271d6de1c52SSatish Balay v = amat->a; 272d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 273d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 274d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 275d6de1c52SSatish Balay #else 276d6de1c52SSatish Balay sum += (*v)*(*v); v++; 277d6de1c52SSatish Balay #endif 278d6de1c52SSatish Balay } 279d6de1c52SSatish Balay v = bmat->a; 280d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 281d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 282d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 283d6de1c52SSatish Balay #else 284d6de1c52SSatish Balay sum += (*v)*(*v); v++; 285d6de1c52SSatish Balay #endif 286d6de1c52SSatish Balay } 287d6de1c52SSatish Balay MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 288d6de1c52SSatish Balay *norm = sqrt(*norm); 289d6de1c52SSatish Balay } 290acdf5bf4SSatish Balay else 291e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 292d6de1c52SSatish Balay } 293d6de1c52SSatish Balay return 0; 294d6de1c52SSatish Balay } 29557b952d6SSatish Balay 2965615d1e5SSatish Balay #undef __FUNC__ 2975615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 29857b952d6SSatish Balay static int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 29957b952d6SSatish Balay { 30057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 30157b952d6SSatish Balay MPI_Comm comm = mat->comm; 30257b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 30357b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 30457b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 30557b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 30657b952d6SSatish Balay InsertMode addv; 30757b952d6SSatish Balay Scalar *rvalues,*svalues; 30857b952d6SSatish Balay 30957b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 31057b952d6SSatish Balay MPI_Allreduce(&baij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 31157b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 312e3372554SBarry Smith SETERRQ(1,0,"Some processors inserted others added"); 31357b952d6SSatish Balay } 31457b952d6SSatish Balay baij->insertmode = addv; /* in case this processor had no cache */ 31557b952d6SSatish Balay 31657b952d6SSatish Balay /* first count number of contributors to each processor */ 31757b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 31857b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 31957b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 32057b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 32157b952d6SSatish Balay idx = baij->stash.idx[i]; 32257b952d6SSatish Balay for ( j=0; j<size; j++ ) { 32357b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 32457b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 32557b952d6SSatish Balay } 32657b952d6SSatish Balay } 32757b952d6SSatish Balay } 32857b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 32957b952d6SSatish Balay 33057b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 33157b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 33257b952d6SSatish Balay MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 33357b952d6SSatish Balay nreceives = work[rank]; 33457b952d6SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 33557b952d6SSatish Balay nmax = work[rank]; 33657b952d6SSatish Balay PetscFree(work); 33757b952d6SSatish Balay 33857b952d6SSatish Balay /* post receives: 33957b952d6SSatish Balay 1) each message will consist of ordered pairs 34057b952d6SSatish Balay (global index,value) we store the global index as a double 34157b952d6SSatish Balay to simplify the message passing. 34257b952d6SSatish Balay 2) since we don't know how long each individual message is we 34357b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 34457b952d6SSatish Balay this is a lot of wasted space. 34557b952d6SSatish Balay 34657b952d6SSatish Balay 34757b952d6SSatish Balay This could be done better. 34857b952d6SSatish Balay */ 34957b952d6SSatish Balay rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 35057b952d6SSatish Balay CHKPTRQ(rvalues); 35157b952d6SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 35257b952d6SSatish Balay CHKPTRQ(recv_waits); 35357b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 35457b952d6SSatish Balay MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 35557b952d6SSatish Balay comm,recv_waits+i); 35657b952d6SSatish Balay } 35757b952d6SSatish Balay 35857b952d6SSatish Balay /* do sends: 35957b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 36057b952d6SSatish Balay the ith processor 36157b952d6SSatish Balay */ 36257b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 36357b952d6SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 36457b952d6SSatish Balay CHKPTRQ(send_waits); 36557b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 36657b952d6SSatish Balay starts[0] = 0; 36757b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 36857b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 36957b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 37057b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 37157b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 37257b952d6SSatish Balay } 37357b952d6SSatish Balay PetscFree(owner); 37457b952d6SSatish Balay starts[0] = 0; 37557b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 37657b952d6SSatish Balay count = 0; 37757b952d6SSatish Balay for ( i=0; i<size; i++ ) { 37857b952d6SSatish Balay if (procs[i]) { 37957b952d6SSatish Balay MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 38057b952d6SSatish Balay comm,send_waits+count++); 38157b952d6SSatish Balay } 38257b952d6SSatish Balay } 38357b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 38457b952d6SSatish Balay 38557b952d6SSatish Balay /* Free cache space */ 386d2dc9b81SLois Curfman McInnes PLogInfo(mat,"MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",baij->stash.n); 38757b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 38857b952d6SSatish Balay 38957b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 39057b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 39157b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 39257b952d6SSatish Balay baij->rmax = nmax; 39357b952d6SSatish Balay 39457b952d6SSatish Balay return 0; 39557b952d6SSatish Balay } 39657b952d6SSatish Balay 39757b952d6SSatish Balay 3985615d1e5SSatish Balay #undef __FUNC__ 3995615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 40057b952d6SSatish Balay static int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 40157b952d6SSatish Balay { 40257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 40357b952d6SSatish Balay MPI_Status *send_status,recv_status; 40457b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 40557b952d6SSatish Balay int bs=baij->bs,row,col,other_disassembled; 40657b952d6SSatish Balay Scalar *values,val; 40757b952d6SSatish Balay InsertMode addv = baij->insertmode; 40857b952d6SSatish Balay 40957b952d6SSatish Balay /* wait on receives */ 41057b952d6SSatish Balay while (count) { 41157b952d6SSatish Balay MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status); 41257b952d6SSatish Balay /* unpack receives into our local space */ 41357b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 41457b952d6SSatish Balay MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 41557b952d6SSatish Balay n = n/3; 41657b952d6SSatish Balay for ( i=0; i<n; i++ ) { 41757b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 41857b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 41957b952d6SSatish Balay val = values[3*i+2]; 42057b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 42157b952d6SSatish Balay col -= baij->cstart*bs; 42257b952d6SSatish Balay MatSetValues(baij->A,1,&row,1,&col,&val,addv); 42357b952d6SSatish Balay } 42457b952d6SSatish Balay else { 42557b952d6SSatish Balay if (mat->was_assembled) { 426905e6a2fSBarry Smith if (!baij->colmap) { 427905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr); 428905e6a2fSBarry Smith } 429905e6a2fSBarry Smith col = (baij->colmap[col/bs]-1)*bs + col%bs; 43057b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 43157b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 43257b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 43357b952d6SSatish Balay } 43457b952d6SSatish Balay } 43557b952d6SSatish Balay MatSetValues(baij->B,1,&row,1,&col,&val,addv); 43657b952d6SSatish Balay } 43757b952d6SSatish Balay } 43857b952d6SSatish Balay count--; 43957b952d6SSatish Balay } 44057b952d6SSatish Balay PetscFree(baij->recv_waits); PetscFree(baij->rvalues); 44157b952d6SSatish Balay 44257b952d6SSatish Balay /* wait on sends */ 44357b952d6SSatish Balay if (baij->nsends) { 44457b952d6SSatish Balay send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status)); 44557b952d6SSatish Balay CHKPTRQ(send_status); 44657b952d6SSatish Balay MPI_Waitall(baij->nsends,baij->send_waits,send_status); 44757b952d6SSatish Balay PetscFree(send_status); 44857b952d6SSatish Balay } 44957b952d6SSatish Balay PetscFree(baij->send_waits); PetscFree(baij->svalues); 45057b952d6SSatish Balay 45157b952d6SSatish Balay baij->insertmode = NOT_SET_VALUES; 45257b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 45357b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 45457b952d6SSatish Balay 45557b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 45657b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 45757b952d6SSatish Balay MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 45857b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 45957b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 46057b952d6SSatish Balay } 46157b952d6SSatish Balay 4626d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 46357b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 46457b952d6SSatish Balay } 46557b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 46657b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 46757b952d6SSatish Balay 46857b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 46957b952d6SSatish Balay return 0; 47057b952d6SSatish Balay } 47157b952d6SSatish Balay 4725615d1e5SSatish Balay #undef __FUNC__ 4735615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 47457b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 47557b952d6SSatish Balay { 47657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 47757b952d6SSatish Balay int ierr; 47857b952d6SSatish Balay 47957b952d6SSatish Balay if (baij->size == 1) { 48057b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 48157b952d6SSatish Balay } 482e3372554SBarry Smith else SETERRQ(1,0,"Only uniprocessor output supported"); 48357b952d6SSatish Balay return 0; 48457b952d6SSatish Balay } 48557b952d6SSatish Balay 4865615d1e5SSatish Balay #undef __FUNC__ 4875615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab" 48857b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 48957b952d6SSatish Balay { 49057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 491cee3aa6bSSatish Balay int ierr, format,rank,bs = baij->bs; 49257b952d6SSatish Balay FILE *fd; 49357b952d6SSatish Balay ViewerType vtype; 49457b952d6SSatish Balay 49557b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 49657b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 49757b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 498639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 4994e220ebcSLois Curfman McInnes MatInfo info; 50057b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 50157b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 5024e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 50357b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 50457b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 5054e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 5064e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 5074e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->A,MAT_LOCAL,&info); 5084e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 5094e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->B,MAT_LOCAL,&info); 5104e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 51157b952d6SSatish Balay fflush(fd); 51257b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 51357b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 51457b952d6SSatish Balay return 0; 51557b952d6SSatish Balay } 516639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_INFO) { 517bcc3fcf6SBarry Smith PetscPrintf(mat->comm," block size is %d\n",bs); 51857b952d6SSatish Balay return 0; 51957b952d6SSatish Balay } 52057b952d6SSatish Balay } 52157b952d6SSatish Balay 52257b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 52357b952d6SSatish Balay Draw draw; 52457b952d6SSatish Balay PetscTruth isnull; 52557b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 52657b952d6SSatish Balay ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0; 52757b952d6SSatish Balay } 52857b952d6SSatish Balay 52957b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 53057b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 53157b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 53257b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 53357b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 53457b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 53557b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 53657b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 53757b952d6SSatish Balay fflush(fd); 53857b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 53957b952d6SSatish Balay } 54057b952d6SSatish Balay else { 54157b952d6SSatish Balay int size = baij->size; 54257b952d6SSatish Balay rank = baij->rank; 54357b952d6SSatish Balay if (size == 1) { 54457b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 54557b952d6SSatish Balay } 54657b952d6SSatish Balay else { 54757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 54857b952d6SSatish Balay Mat A; 54957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 55057b952d6SSatish Balay int M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals; 55157b952d6SSatish Balay int mbs=baij->mbs; 55257b952d6SSatish Balay Scalar *a; 55357b952d6SSatish Balay 55457b952d6SSatish Balay if (!rank) { 555cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 55657b952d6SSatish Balay CHKERRQ(ierr); 55757b952d6SSatish Balay } 55857b952d6SSatish Balay else { 559cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 56057b952d6SSatish Balay CHKERRQ(ierr); 56157b952d6SSatish Balay } 56257b952d6SSatish Balay PLogObjectParent(mat,A); 56357b952d6SSatish Balay 56457b952d6SSatish Balay /* copy over the A part */ 56557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 56657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 56757b952d6SSatish Balay row = baij->rstart; 56857b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 56957b952d6SSatish Balay 57057b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 57157b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 57257b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 57357b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 57457b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 57557b952d6SSatish Balay for (k=0; k<bs; k++ ) { 576cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 577cee3aa6bSSatish Balay col++; a += bs; 57857b952d6SSatish Balay } 57957b952d6SSatish Balay } 58057b952d6SSatish Balay } 58157b952d6SSatish Balay /* copy over the B part */ 58257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 58357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 58457b952d6SSatish Balay row = baij->rstart*bs; 58557b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 58657b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 58757b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 58857b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 58957b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 59057b952d6SSatish Balay for (k=0; k<bs; k++ ) { 591cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 592cee3aa6bSSatish Balay col++; a += bs; 59357b952d6SSatish Balay } 59457b952d6SSatish Balay } 59557b952d6SSatish Balay } 59657b952d6SSatish Balay PetscFree(rvals); 5976d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 5986d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 59957b952d6SSatish Balay if (!rank) { 60057b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 60157b952d6SSatish Balay } 60257b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 60357b952d6SSatish Balay } 60457b952d6SSatish Balay } 60557b952d6SSatish Balay return 0; 60657b952d6SSatish Balay } 60757b952d6SSatish Balay 60857b952d6SSatish Balay 60957b952d6SSatish Balay 6105615d1e5SSatish Balay #undef __FUNC__ 6115615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 61257b952d6SSatish Balay static int MatView_MPIBAIJ(PetscObject obj,Viewer viewer) 61357b952d6SSatish Balay { 61457b952d6SSatish Balay Mat mat = (Mat) obj; 61557b952d6SSatish Balay int ierr; 61657b952d6SSatish Balay ViewerType vtype; 61757b952d6SSatish Balay 61857b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 61957b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 62057b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 62157b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 62257b952d6SSatish Balay } 62357b952d6SSatish Balay else if (vtype == BINARY_FILE_VIEWER) { 62457b952d6SSatish Balay return MatView_MPIBAIJ_Binary(mat,viewer); 62557b952d6SSatish Balay } 62657b952d6SSatish Balay return 0; 62757b952d6SSatish Balay } 62857b952d6SSatish Balay 6295615d1e5SSatish Balay #undef __FUNC__ 6305615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 63179bdfe76SSatish Balay static int MatDestroy_MPIBAIJ(PetscObject obj) 63279bdfe76SSatish Balay { 63379bdfe76SSatish Balay Mat mat = (Mat) obj; 63479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 63579bdfe76SSatish Balay int ierr; 63679bdfe76SSatish Balay 63779bdfe76SSatish Balay #if defined(PETSC_LOG) 63879bdfe76SSatish Balay PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N); 63979bdfe76SSatish Balay #endif 64079bdfe76SSatish Balay 64179bdfe76SSatish Balay PetscFree(baij->rowners); 64279bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 64379bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 64479bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 64579bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 64679bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 64779bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 64879bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 64979bdfe76SSatish Balay PetscFree(baij); 65090f02eecSBarry Smith if (mat->mapping) { 65190f02eecSBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 65290f02eecSBarry Smith } 65379bdfe76SSatish Balay PLogObjectDestroy(mat); 65479bdfe76SSatish Balay PetscHeaderDestroy(mat); 65579bdfe76SSatish Balay return 0; 65679bdfe76SSatish Balay } 65779bdfe76SSatish Balay 6585615d1e5SSatish Balay #undef __FUNC__ 6595615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 660cee3aa6bSSatish Balay static int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 661cee3aa6bSSatish Balay { 662cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 66347b4a8eaSLois Curfman McInnes int ierr, nt; 664cee3aa6bSSatish Balay 665c16cb8f2SBarry Smith VecGetLocalSize_Fast(xx,nt); 66647b4a8eaSLois Curfman McInnes if (nt != a->n) { 667e3372554SBarry Smith SETERRQ(1,0,"Incompatible parition of A and xx"); 66847b4a8eaSLois Curfman McInnes } 669c16cb8f2SBarry Smith VecGetLocalSize_Fast(yy,nt); 67047b4a8eaSLois Curfman McInnes if (nt != a->m) { 671e3372554SBarry Smith SETERRQ(1,0,"Incompatible parition of A and yy"); 67247b4a8eaSLois Curfman McInnes } 67343a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 674cee3aa6bSSatish Balay ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr); 67543a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 676cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 67743a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 678cee3aa6bSSatish Balay return 0; 679cee3aa6bSSatish Balay } 680cee3aa6bSSatish Balay 6815615d1e5SSatish Balay #undef __FUNC__ 6825615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 683cee3aa6bSSatish Balay static int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 684cee3aa6bSSatish Balay { 685cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 686cee3aa6bSSatish Balay int ierr; 68743a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 688cee3aa6bSSatish Balay ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 68943a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 690cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 691cee3aa6bSSatish Balay return 0; 692cee3aa6bSSatish Balay } 693cee3aa6bSSatish Balay 6945615d1e5SSatish Balay #undef __FUNC__ 6955615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 696cee3aa6bSSatish Balay static int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 697cee3aa6bSSatish Balay { 698cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 699cee3aa6bSSatish Balay int ierr; 700cee3aa6bSSatish Balay 701cee3aa6bSSatish Balay /* do nondiagonal part */ 702cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 703cee3aa6bSSatish Balay /* send it on its way */ 704537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 705cee3aa6bSSatish Balay /* do local part */ 706cee3aa6bSSatish Balay ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr); 707cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 708cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 709cee3aa6bSSatish Balay /* but is not perhaps always true. */ 710639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 711cee3aa6bSSatish Balay return 0; 712cee3aa6bSSatish Balay } 713cee3aa6bSSatish Balay 7145615d1e5SSatish Balay #undef __FUNC__ 7155615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 716cee3aa6bSSatish Balay static int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 717cee3aa6bSSatish Balay { 718cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 719cee3aa6bSSatish Balay int ierr; 720cee3aa6bSSatish Balay 721cee3aa6bSSatish Balay /* do nondiagonal part */ 722cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 723cee3aa6bSSatish Balay /* send it on its way */ 724537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 725cee3aa6bSSatish Balay /* do local part */ 726cee3aa6bSSatish Balay ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 727cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 728cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 729cee3aa6bSSatish Balay /* but is not perhaps always true. */ 730537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 731cee3aa6bSSatish Balay return 0; 732cee3aa6bSSatish Balay } 733cee3aa6bSSatish Balay 734cee3aa6bSSatish Balay /* 735cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 736cee3aa6bSSatish Balay diagonal block 737cee3aa6bSSatish Balay */ 7385615d1e5SSatish Balay #undef __FUNC__ 7395615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 740cee3aa6bSSatish Balay static int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 741cee3aa6bSSatish Balay { 742cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 743cee3aa6bSSatish Balay if (a->M != a->N) 744e3372554SBarry Smith SETERRQ(1,0,"Supports only square matrix where A->A is diag block"); 745cee3aa6bSSatish Balay return MatGetDiagonal(a->A,v); 746cee3aa6bSSatish Balay } 747cee3aa6bSSatish Balay 7485615d1e5SSatish Balay #undef __FUNC__ 7495615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 750cee3aa6bSSatish Balay static int MatScale_MPIBAIJ(Scalar *aa,Mat A) 751cee3aa6bSSatish Balay { 752cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 753cee3aa6bSSatish Balay int ierr; 754cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 755cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 756cee3aa6bSSatish Balay return 0; 757cee3aa6bSSatish Balay } 758026e39d0SSatish Balay 7595615d1e5SSatish Balay #undef __FUNC__ 7605615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 76157b952d6SSatish Balay static int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 76257b952d6SSatish Balay { 76357b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 76457b952d6SSatish Balay *m = mat->M; *n = mat->N; 76557b952d6SSatish Balay return 0; 76657b952d6SSatish Balay } 76757b952d6SSatish Balay 7685615d1e5SSatish Balay #undef __FUNC__ 7695615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 77057b952d6SSatish Balay static int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 77157b952d6SSatish Balay { 77257b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 77357b952d6SSatish Balay *m = mat->m; *n = mat->N; 77457b952d6SSatish Balay return 0; 77557b952d6SSatish Balay } 77657b952d6SSatish Balay 7775615d1e5SSatish Balay #undef __FUNC__ 7785615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 77957b952d6SSatish Balay static int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 78057b952d6SSatish Balay { 78157b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 78257b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 78357b952d6SSatish Balay return 0; 78457b952d6SSatish Balay } 78557b952d6SSatish Balay 786acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 787acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 788acdf5bf4SSatish Balay 7895615d1e5SSatish Balay #undef __FUNC__ 7905615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 791acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 792acdf5bf4SSatish Balay { 793acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 794acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 795acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 796d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 797d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 798acdf5bf4SSatish Balay 799e3372554SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(1,0,"Already active"); 800acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 801acdf5bf4SSatish Balay 802acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 803acdf5bf4SSatish Balay /* 804acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 805acdf5bf4SSatish Balay */ 806acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 807bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 808bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 809acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 810acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 811acdf5bf4SSatish Balay } 812acdf5bf4SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar))); 813acdf5bf4SSatish Balay CHKPTRQ(mat->rowvalues); 814acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 815acdf5bf4SSatish Balay } 816acdf5bf4SSatish Balay 817acdf5bf4SSatish Balay 818e3372554SBarry Smith if (row < brstart || row >= brend) SETERRQ(1,0,"Only local rows") 819d9d09a02SSatish Balay lrow = row - brstart; 820acdf5bf4SSatish Balay 821acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 822acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 823acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 824acdf5bf4SSatish Balay ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 825acdf5bf4SSatish Balay ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 826acdf5bf4SSatish Balay nztot = nzA + nzB; 827acdf5bf4SSatish Balay 828acdf5bf4SSatish Balay cmap = mat->garray; 829acdf5bf4SSatish Balay if (v || idx) { 830acdf5bf4SSatish Balay if (nztot) { 831acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 832acdf5bf4SSatish Balay int imark = -1; 833acdf5bf4SSatish Balay if (v) { 834acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 835acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 836d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 837acdf5bf4SSatish Balay else break; 838acdf5bf4SSatish Balay } 839acdf5bf4SSatish Balay imark = i; 840acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 841acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 842acdf5bf4SSatish Balay } 843acdf5bf4SSatish Balay if (idx) { 844acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 845acdf5bf4SSatish Balay if (imark > -1) { 846acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 847bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 848acdf5bf4SSatish Balay } 849acdf5bf4SSatish Balay } else { 850acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 851d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 852d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 853acdf5bf4SSatish Balay else break; 854acdf5bf4SSatish Balay } 855acdf5bf4SSatish Balay imark = i; 856acdf5bf4SSatish Balay } 857d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 858d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 859acdf5bf4SSatish Balay } 860acdf5bf4SSatish Balay } 861d212a18eSSatish Balay else { 862d212a18eSSatish Balay if (idx) *idx = 0; 863d212a18eSSatish Balay if (v) *v = 0; 864d212a18eSSatish Balay } 865acdf5bf4SSatish Balay } 866acdf5bf4SSatish Balay *nz = nztot; 867acdf5bf4SSatish Balay ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 868acdf5bf4SSatish Balay ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 869acdf5bf4SSatish Balay return 0; 870acdf5bf4SSatish Balay } 871acdf5bf4SSatish Balay 8725615d1e5SSatish Balay #undef __FUNC__ 8735615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 874acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 875acdf5bf4SSatish Balay { 876acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 877acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 878e3372554SBarry Smith SETERRQ(1,0,"MatGetRow not called"); 879acdf5bf4SSatish Balay } 880acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 881acdf5bf4SSatish Balay return 0; 882acdf5bf4SSatish Balay } 883acdf5bf4SSatish Balay 8845615d1e5SSatish Balay #undef __FUNC__ 8855615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 8865a838052SSatish Balay static int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 8875a838052SSatish Balay { 8885a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 8895a838052SSatish Balay *bs = baij->bs; 8905a838052SSatish Balay return 0; 8915a838052SSatish Balay } 8925a838052SSatish Balay 8935615d1e5SSatish Balay #undef __FUNC__ 8945615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 89558667388SSatish Balay static int MatZeroEntries_MPIBAIJ(Mat A) 89658667388SSatish Balay { 89758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 89858667388SSatish Balay int ierr; 89958667388SSatish Balay ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 90058667388SSatish Balay ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 90158667388SSatish Balay return 0; 90258667388SSatish Balay } 9030ac07820SSatish Balay 9045615d1e5SSatish Balay #undef __FUNC__ 9055615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 9064e220ebcSLois Curfman McInnes static int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 9070ac07820SSatish Balay { 9084e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 9094e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 9107d57db60SLois Curfman McInnes int ierr; 9117d57db60SLois Curfman McInnes double isend[5], irecv[5]; 9120ac07820SSatish Balay 9134e220ebcSLois Curfman McInnes info->rows_global = (double)a->M; 9144e220ebcSLois Curfman McInnes info->columns_global = (double)a->N; 9154e220ebcSLois Curfman McInnes info->rows_local = (double)a->m; 9164e220ebcSLois Curfman McInnes info->columns_local = (double)a->N; 9174e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 9184e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 9194e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory; 9204e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 9214e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory; 9220ac07820SSatish Balay if (flag == MAT_LOCAL) { 9234e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 9244e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 9254e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 9264e220ebcSLois Curfman McInnes info->memory = isend[3]; 9274e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 9280ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 9290ac07820SSatish Balay MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_MAX,matin->comm); 9304e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 9314e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 9324e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 9334e220ebcSLois Curfman McInnes info->memory = irecv[3]; 9344e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 9350ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 9360ac07820SSatish Balay MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_SUM,matin->comm); 9374e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 9384e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 9394e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 9404e220ebcSLois Curfman McInnes info->memory = irecv[3]; 9414e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 9420ac07820SSatish Balay } 9434e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 9444e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 9454e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 9460ac07820SSatish Balay return 0; 9470ac07820SSatish Balay } 9480ac07820SSatish Balay 9495615d1e5SSatish Balay #undef __FUNC__ 9505615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 95158667388SSatish Balay static int MatSetOption_MPIBAIJ(Mat A,MatOption op) 95258667388SSatish Balay { 95358667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 95458667388SSatish Balay 95558667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 95658667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 9576da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 958b1fbbac0SLois Curfman McInnes op == MAT_COLUMNS_SORTED) { 959b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 960b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 961b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 962aeafbbfcSLois Curfman McInnes a->roworiented = 1; 96358667388SSatish Balay MatSetOption(a->A,op); 96458667388SSatish Balay MatSetOption(a->B,op); 965b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 9666da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 96758667388SSatish Balay op == MAT_SYMMETRIC || 96858667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 96958667388SSatish Balay op == MAT_YES_NEW_DIAGONALS) 97058667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 97158667388SSatish Balay else if (op == MAT_COLUMN_ORIENTED) { 97258667388SSatish Balay a->roworiented = 0; 97358667388SSatish Balay MatSetOption(a->A,op); 97458667388SSatish Balay MatSetOption(a->B,op); 97590f02eecSBarry Smith } else if (op == MAT_IGNORE_OFF_PROCESSOR_ENTRIES) { 97690f02eecSBarry Smith a->donotstash = 1; 97790f02eecSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) 978e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");} 97958667388SSatish Balay else 980e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"unknown option");} 98158667388SSatish Balay return 0; 98258667388SSatish Balay } 98358667388SSatish Balay 9845615d1e5SSatish Balay #undef __FUNC__ 9855615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 9860ac07820SSatish Balay static int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 9870ac07820SSatish Balay { 9880ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 9890ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 9900ac07820SSatish Balay Mat B; 9910ac07820SSatish Balay int ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col; 9920ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 9930ac07820SSatish Balay Scalar *a; 9940ac07820SSatish Balay 9950ac07820SSatish Balay if (matout == PETSC_NULL && M != N) 996e3372554SBarry Smith SETERRQ(1,0,"Square matrix only for in-place"); 9970ac07820SSatish Balay ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 9980ac07820SSatish Balay CHKERRQ(ierr); 9990ac07820SSatish Balay 10000ac07820SSatish Balay /* copy over the A part */ 10010ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 10020ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 10030ac07820SSatish Balay row = baij->rstart; 10040ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 10050ac07820SSatish Balay 10060ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 10070ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 10080ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 10090ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 10100ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 10110ac07820SSatish Balay for (k=0; k<bs; k++ ) { 10120ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 10130ac07820SSatish Balay col++; a += bs; 10140ac07820SSatish Balay } 10150ac07820SSatish Balay } 10160ac07820SSatish Balay } 10170ac07820SSatish Balay /* copy over the B part */ 10180ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 10190ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 10200ac07820SSatish Balay row = baij->rstart*bs; 10210ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 10220ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 10230ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 10240ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 10250ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 10260ac07820SSatish Balay for (k=0; k<bs; k++ ) { 10270ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 10280ac07820SSatish Balay col++; a += bs; 10290ac07820SSatish Balay } 10300ac07820SSatish Balay } 10310ac07820SSatish Balay } 10320ac07820SSatish Balay PetscFree(rvals); 10330ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 10340ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 10350ac07820SSatish Balay 10360ac07820SSatish Balay if (matout != PETSC_NULL) { 10370ac07820SSatish Balay *matout = B; 10380ac07820SSatish Balay } else { 10390ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 10400ac07820SSatish Balay PetscFree(baij->rowners); 10410ac07820SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 10420ac07820SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 10430ac07820SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 10440ac07820SSatish Balay if (baij->garray) PetscFree(baij->garray); 10450ac07820SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 10460ac07820SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 10470ac07820SSatish Balay PetscFree(baij); 10480ac07820SSatish Balay PetscMemcpy(A,B,sizeof(struct _Mat)); 10490ac07820SSatish Balay PetscHeaderDestroy(B); 10500ac07820SSatish Balay } 10510ac07820SSatish Balay return 0; 10520ac07820SSatish Balay } 10530e95ebc0SSatish Balay 10545615d1e5SSatish Balay #undef __FUNC__ 10555615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 10560e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 10570e95ebc0SSatish Balay { 10580e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 10590e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 10600e95ebc0SSatish Balay int ierr,s1,s2,s3; 10610e95ebc0SSatish Balay 10620e95ebc0SSatish Balay if (ll) { 10630e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr); 10640e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr); 1065e3372554SBarry Smith if (s1!=s2) SETERRQ(1,0,"non-conforming local sizes"); 10660e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr); 10670e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr); 10680e95ebc0SSatish Balay } 1069e3372554SBarry Smith if (rr) SETERRQ(1,0,"not supported for right vector"); 10700e95ebc0SSatish Balay return 0; 10710e95ebc0SSatish Balay } 10720e95ebc0SSatish Balay 10730ac07820SSatish Balay /* the code does not do the diagonal entries correctly unless the 10740ac07820SSatish Balay matrix is square and the column and row owerships are identical. 10750ac07820SSatish Balay This is a BUG. The only way to fix it seems to be to access 10760ac07820SSatish Balay baij->A and baij->B directly and not through the MatZeroRows() 10770ac07820SSatish Balay routine. 10780ac07820SSatish Balay */ 10795615d1e5SSatish Balay #undef __FUNC__ 10805615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 10810ac07820SSatish Balay static int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 10820ac07820SSatish Balay { 10830ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 10840ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 10850ac07820SSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work; 10860ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 10870ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 10880ac07820SSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs; 10890ac07820SSatish Balay MPI_Comm comm = A->comm; 10900ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 10910ac07820SSatish Balay MPI_Status recv_status,*send_status; 10920ac07820SSatish Balay IS istmp; 10930ac07820SSatish Balay 10940ac07820SSatish Balay ierr = ISGetSize(is,&N); CHKERRQ(ierr); 10950ac07820SSatish Balay ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 10960ac07820SSatish Balay 10970ac07820SSatish Balay /* first count number of contributors to each processor */ 10980ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 10990ac07820SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 11000ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 11010ac07820SSatish Balay for ( i=0; i<N; i++ ) { 11020ac07820SSatish Balay idx = rows[i]; 11030ac07820SSatish Balay found = 0; 11040ac07820SSatish Balay for ( j=0; j<size; j++ ) { 11050ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 11060ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 11070ac07820SSatish Balay } 11080ac07820SSatish Balay } 1109e3372554SBarry Smith if (!found) SETERRQ(1,0,"Index out of range"); 11100ac07820SSatish Balay } 11110ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 11120ac07820SSatish Balay 11130ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 11140ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 11150ac07820SSatish Balay MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 11160ac07820SSatish Balay nrecvs = work[rank]; 11170ac07820SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 11180ac07820SSatish Balay nmax = work[rank]; 11190ac07820SSatish Balay PetscFree(work); 11200ac07820SSatish Balay 11210ac07820SSatish Balay /* post receives: */ 11220ac07820SSatish Balay rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 11230ac07820SSatish Balay CHKPTRQ(rvalues); 11240ac07820SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 11250ac07820SSatish Balay CHKPTRQ(recv_waits); 11260ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 11270ac07820SSatish Balay MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 11280ac07820SSatish Balay } 11290ac07820SSatish Balay 11300ac07820SSatish Balay /* do sends: 11310ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 11320ac07820SSatish Balay the ith processor 11330ac07820SSatish Balay */ 11340ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 11350ac07820SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 11360ac07820SSatish Balay CHKPTRQ(send_waits); 11370ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 11380ac07820SSatish Balay starts[0] = 0; 11390ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 11400ac07820SSatish Balay for ( i=0; i<N; i++ ) { 11410ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 11420ac07820SSatish Balay } 11430ac07820SSatish Balay ISRestoreIndices(is,&rows); 11440ac07820SSatish Balay 11450ac07820SSatish Balay starts[0] = 0; 11460ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 11470ac07820SSatish Balay count = 0; 11480ac07820SSatish Balay for ( i=0; i<size; i++ ) { 11490ac07820SSatish Balay if (procs[i]) { 11500ac07820SSatish Balay MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 11510ac07820SSatish Balay } 11520ac07820SSatish Balay } 11530ac07820SSatish Balay PetscFree(starts); 11540ac07820SSatish Balay 11550ac07820SSatish Balay base = owners[rank]*bs; 11560ac07820SSatish Balay 11570ac07820SSatish Balay /* wait on receives */ 11580ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 11590ac07820SSatish Balay source = lens + nrecvs; 11600ac07820SSatish Balay count = nrecvs; slen = 0; 11610ac07820SSatish Balay while (count) { 11620ac07820SSatish Balay MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 11630ac07820SSatish Balay /* unpack receives into our local space */ 11640ac07820SSatish Balay MPI_Get_count(&recv_status,MPI_INT,&n); 11650ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 11660ac07820SSatish Balay lens[imdex] = n; 11670ac07820SSatish Balay slen += n; 11680ac07820SSatish Balay count--; 11690ac07820SSatish Balay } 11700ac07820SSatish Balay PetscFree(recv_waits); 11710ac07820SSatish Balay 11720ac07820SSatish Balay /* move the data into the send scatter */ 11730ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 11740ac07820SSatish Balay count = 0; 11750ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 11760ac07820SSatish Balay values = rvalues + i*nmax; 11770ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 11780ac07820SSatish Balay lrows[count++] = values[j] - base; 11790ac07820SSatish Balay } 11800ac07820SSatish Balay } 11810ac07820SSatish Balay PetscFree(rvalues); PetscFree(lens); 11820ac07820SSatish Balay PetscFree(owner); PetscFree(nprocs); 11830ac07820SSatish Balay 11840ac07820SSatish Balay /* actually zap the local rows */ 1185537820f0SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 11860ac07820SSatish Balay PLogObjectParent(A,istmp); 11870ac07820SSatish Balay PetscFree(lrows); 11880ac07820SSatish Balay ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 11890ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 11900ac07820SSatish Balay ierr = ISDestroy(istmp); CHKERRQ(ierr); 11910ac07820SSatish Balay 11920ac07820SSatish Balay /* wait on sends */ 11930ac07820SSatish Balay if (nsends) { 11940ac07820SSatish Balay send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 11950ac07820SSatish Balay CHKPTRQ(send_status); 11960ac07820SSatish Balay MPI_Waitall(nsends,send_waits,send_status); 11970ac07820SSatish Balay PetscFree(send_status); 11980ac07820SSatish Balay } 11990ac07820SSatish Balay PetscFree(send_waits); PetscFree(svalues); 12000ac07820SSatish Balay 12010ac07820SSatish Balay return 0; 12020ac07820SSatish Balay } 1203ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 12045615d1e5SSatish Balay #undef __FUNC__ 12055615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1206ba4ca20aSSatish Balay static int MatPrintHelp_MPIBAIJ(Mat A) 1207ba4ca20aSSatish Balay { 1208ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1209ba4ca20aSSatish Balay 1210ba4ca20aSSatish Balay if (!a->rank) return MatPrintHelp_SeqBAIJ(a->A); 1211ba4ca20aSSatish Balay else return 0; 1212ba4ca20aSSatish Balay } 12130ac07820SSatish Balay 12145615d1e5SSatish Balay #undef __FUNC__ 12155615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1216bb5a7306SBarry Smith static int MatSetUnfactored_MPIBAIJ(Mat A) 1217bb5a7306SBarry Smith { 1218bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1219bb5a7306SBarry Smith int ierr; 1220bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 1221bb5a7306SBarry Smith return 0; 1222bb5a7306SBarry Smith } 1223bb5a7306SBarry Smith 12240ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int); 12250ac07820SSatish Balay 122679bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 122779bdfe76SSatish Balay static struct _MatOps MatOps = { 1228bd16c2feSSatish Balay MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ, 12294c50302cSBarry Smith MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 12304c50302cSBarry Smith 0,0,0,0, 12310ac07820SSatish Balay 0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ, 12320e95ebc0SSatish Balay 0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ, 123358667388SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ, 12344c50302cSBarry Smith MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0, 12354c50302cSBarry Smith 0,0,0,MatGetSize_MPIBAIJ, 12364c50302cSBarry Smith MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 1237905e6a2fSBarry Smith 0,0,0,MatConvertSameType_MPIBAIJ,0,0, 1238d212a18eSSatish Balay 0,0,0,MatGetSubMatrices_MPIBAIJ, 1239ba4ca20aSSatish Balay MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ, 1240bb5a7306SBarry Smith MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ, 1241bb5a7306SBarry Smith 0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ}; 124279bdfe76SSatish Balay 124379bdfe76SSatish Balay 12445615d1e5SSatish Balay #undef __FUNC__ 12455615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 124679bdfe76SSatish Balay /*@C 124779bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 124879bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 124979bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 125079bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 125179bdfe76SSatish Balay performance can be increased by more than a factor of 50. 125279bdfe76SSatish Balay 125379bdfe76SSatish Balay Input Parameters: 125479bdfe76SSatish Balay . comm - MPI communicator 125579bdfe76SSatish Balay . bs - size of blockk 125679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 125792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 125892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 125992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 126092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 126192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 126279bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 126392e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 126479bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 126579bdfe76SSatish Balay submatrix (same for all local rows) 126692e8d321SLois Curfman McInnes . d_nzz - array containing the number of block nonzeros in the various block rows 126792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 126892e8d321SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if 126992e8d321SLois Curfman McInnes it is zero. 127092e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 127179bdfe76SSatish Balay submatrix (same for all local rows). 127292e8d321SLois Curfman McInnes . o_nzz - array containing the number of nonzeros in the various block rows of the 127392e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 127492e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 127579bdfe76SSatish Balay 127679bdfe76SSatish Balay Output Parameter: 127779bdfe76SSatish Balay . A - the matrix 127879bdfe76SSatish Balay 127979bdfe76SSatish Balay Notes: 128079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 128179bdfe76SSatish Balay (possibly both). 128279bdfe76SSatish Balay 128379bdfe76SSatish Balay Storage Information: 128479bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 128579bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 128679bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 128779bdfe76SSatish Balay local matrix (a rectangular submatrix). 128879bdfe76SSatish Balay 128979bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 129079bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 129179bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 129279bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 129379bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 129479bdfe76SSatish Balay 129579bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 129679bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 129779bdfe76SSatish Balay 129879bdfe76SSatish Balay $ 0 1 2 3 4 5 6 7 8 9 10 11 129979bdfe76SSatish Balay $ ------------------- 130079bdfe76SSatish Balay $ row 3 | o o o d d d o o o o o o 130179bdfe76SSatish Balay $ row 4 | o o o d d d o o o o o o 130279bdfe76SSatish Balay $ row 5 | o o o d d d o o o o o o 130379bdfe76SSatish Balay $ ------------------- 130479bdfe76SSatish Balay $ 130579bdfe76SSatish Balay 130679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 130779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 130879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 130957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 131079bdfe76SSatish Balay 131179bdfe76SSatish Balay Now d_nz should indicate the number of nonzeros per row in the d matrix, 131279bdfe76SSatish Balay and o_nz should indicate the number of nonzeros per row in the o matrix. 131379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 131492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 131592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 13166da5968aSLois Curfman McInnes matrices. 131779bdfe76SSatish Balay 131892e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 131979bdfe76SSatish Balay 132079bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues() 132179bdfe76SSatish Balay @*/ 132279bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 132379bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 132479bdfe76SSatish Balay { 132579bdfe76SSatish Balay Mat B; 132679bdfe76SSatish Balay Mat_MPIBAIJ *b; 13274c50302cSBarry Smith int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size; 132879bdfe76SSatish Balay 1329e3372554SBarry Smith if (bs < 1) SETERRQ(1,0,"invalid block size specified"); 133079bdfe76SSatish Balay *A = 0; 133179bdfe76SSatish Balay PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATMPIBAIJ,comm); 133279bdfe76SSatish Balay PLogObjectCreate(B); 133379bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 133479bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 133579bdfe76SSatish Balay PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 13364c50302cSBarry Smith MPI_Comm_size(comm,&size); 13374c50302cSBarry Smith if (size == 1) { 13384c50302cSBarry Smith B->ops.getrowij = MatGetRowIJ_MPIBAIJ; 13394c50302cSBarry Smith B->ops.restorerowij = MatRestoreRowIJ_MPIBAIJ; 13404c50302cSBarry Smith B->ops.lufactorsymbolic = MatLUFactorSymbolic_MPIBAIJ; 13414c50302cSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_MPIBAIJ; 13424c50302cSBarry Smith B->ops.lufactor = MatLUFactor_MPIBAIJ; 13434c50302cSBarry Smith B->ops.solve = MatSolve_MPIBAIJ; 13444c50302cSBarry Smith B->ops.solveadd = MatSolveAdd_MPIBAIJ; 13454c50302cSBarry Smith B->ops.solvetrans = MatSolveTrans_MPIBAIJ; 13464c50302cSBarry Smith B->ops.solvetransadd = MatSolveTransAdd_MPIBAIJ; 13474c50302cSBarry Smith B->ops.ilufactorsymbolic = MatILUFactorSymbolic_MPIBAIJ; 13484c50302cSBarry Smith } 13494c50302cSBarry Smith 135079bdfe76SSatish Balay B->destroy = MatDestroy_MPIBAIJ; 135179bdfe76SSatish Balay B->view = MatView_MPIBAIJ; 135290f02eecSBarry Smith B->mapping = 0; 135379bdfe76SSatish Balay B->factor = 0; 135479bdfe76SSatish Balay B->assembled = PETSC_FALSE; 135579bdfe76SSatish Balay 135679bdfe76SSatish Balay b->insertmode = NOT_SET_VALUES; 135779bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 135879bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 135979bdfe76SSatish Balay 136079bdfe76SSatish Balay if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) 1361e3372554SBarry Smith SETERRQ(1,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1362e3372554SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) SETERRQ(1,0,"either M or m should be specified"); 1363e3372554SBarry Smith if ( M == PETSC_DECIDE && n == PETSC_DECIDE)SETERRQ(1,0,"either N or n should be specified"); 1364cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1365cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 136679bdfe76SSatish Balay 136779bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 136879bdfe76SSatish Balay work[0] = m; work[1] = n; 136979bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 137079bdfe76SSatish Balay MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 137179bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 137279bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 137379bdfe76SSatish Balay } 137479bdfe76SSatish Balay if (m == PETSC_DECIDE) { 137579bdfe76SSatish Balay Mbs = M/bs; 1376e3372554SBarry Smith if (Mbs*bs != M) SETERRQ(1,0,"No of global rows must be divisible by blocksize"); 137779bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 137879bdfe76SSatish Balay m = mbs*bs; 137979bdfe76SSatish Balay } 138079bdfe76SSatish Balay if (n == PETSC_DECIDE) { 138179bdfe76SSatish Balay Nbs = N/bs; 1382e3372554SBarry Smith if (Nbs*bs != N) SETERRQ(1,0,"No of global cols must be divisible by blocksize"); 138379bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 138479bdfe76SSatish Balay n = nbs*bs; 138579bdfe76SSatish Balay } 1386e3372554SBarry Smith if (mbs*bs != m || nbs*bs != n) SETERRQ(1,0,"No of local rows, cols must be divisible by blocksize"); 138779bdfe76SSatish Balay 138879bdfe76SSatish Balay b->m = m; B->m = m; 138979bdfe76SSatish Balay b->n = n; B->n = n; 139079bdfe76SSatish Balay b->N = N; B->N = N; 139179bdfe76SSatish Balay b->M = M; B->M = M; 139279bdfe76SSatish Balay b->bs = bs; 139379bdfe76SSatish Balay b->bs2 = bs*bs; 139479bdfe76SSatish Balay b->mbs = mbs; 139579bdfe76SSatish Balay b->nbs = nbs; 139679bdfe76SSatish Balay b->Mbs = Mbs; 139779bdfe76SSatish Balay b->Nbs = Nbs; 139879bdfe76SSatish Balay 139979bdfe76SSatish Balay /* build local table of row and column ownerships */ 140079bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 140179bdfe76SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 14020ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 140379bdfe76SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm); 140479bdfe76SSatish Balay b->rowners[0] = 0; 140579bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 140679bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 140779bdfe76SSatish Balay } 140879bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 140979bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 14104fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 14114fa0d573SSatish Balay b->rend_bs = b->rend * bs; 14124fa0d573SSatish Balay 141379bdfe76SSatish Balay MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm); 141479bdfe76SSatish Balay b->cowners[0] = 0; 141579bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 141679bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 141779bdfe76SSatish Balay } 141879bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 141979bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 14204fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 14214fa0d573SSatish Balay b->cend_bs = b->cend * bs; 142279bdfe76SSatish Balay 142379bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 142479bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 142579bdfe76SSatish Balay PLogObjectParent(B,b->A); 142679bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 142779bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 142879bdfe76SSatish Balay PLogObjectParent(B,b->B); 142979bdfe76SSatish Balay 143079bdfe76SSatish Balay /* build cache for off array entries formed */ 143179bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 143290f02eecSBarry Smith b->donotstash = 0; 143379bdfe76SSatish Balay b->colmap = 0; 143479bdfe76SSatish Balay b->garray = 0; 143579bdfe76SSatish Balay b->roworiented = 1; 143679bdfe76SSatish Balay 143779bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 143879bdfe76SSatish Balay b->lvec = 0; 143979bdfe76SSatish Balay b->Mvctx = 0; 144079bdfe76SSatish Balay 144179bdfe76SSatish Balay /* stuff for MatGetRow() */ 144279bdfe76SSatish Balay b->rowindices = 0; 144379bdfe76SSatish Balay b->rowvalues = 0; 144479bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 144579bdfe76SSatish Balay 144679bdfe76SSatish Balay *A = B; 144779bdfe76SSatish Balay return 0; 144879bdfe76SSatish Balay } 1449026e39d0SSatish Balay 14505615d1e5SSatish Balay #undef __FUNC__ 14515615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ" 14520ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues) 14530ac07820SSatish Balay { 14540ac07820SSatish Balay Mat mat; 14550ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 14560ac07820SSatish Balay int ierr, len=0, flg; 14570ac07820SSatish Balay 14580ac07820SSatish Balay *newmat = 0; 14590ac07820SSatish Balay PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm); 14600ac07820SSatish Balay PLogObjectCreate(mat); 14610ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a); 14620ac07820SSatish Balay PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 14630ac07820SSatish Balay mat->destroy = MatDestroy_MPIBAIJ; 14640ac07820SSatish Balay mat->view = MatView_MPIBAIJ; 14650ac07820SSatish Balay mat->factor = matin->factor; 14660ac07820SSatish Balay mat->assembled = PETSC_TRUE; 14670ac07820SSatish Balay 14680ac07820SSatish Balay a->m = mat->m = oldmat->m; 14690ac07820SSatish Balay a->n = mat->n = oldmat->n; 14700ac07820SSatish Balay a->M = mat->M = oldmat->M; 14710ac07820SSatish Balay a->N = mat->N = oldmat->N; 14720ac07820SSatish Balay 14730ac07820SSatish Balay a->bs = oldmat->bs; 14740ac07820SSatish Balay a->bs2 = oldmat->bs2; 14750ac07820SSatish Balay a->mbs = oldmat->mbs; 14760ac07820SSatish Balay a->nbs = oldmat->nbs; 14770ac07820SSatish Balay a->Mbs = oldmat->Mbs; 14780ac07820SSatish Balay a->Nbs = oldmat->Nbs; 14790ac07820SSatish Balay 14800ac07820SSatish Balay a->rstart = oldmat->rstart; 14810ac07820SSatish Balay a->rend = oldmat->rend; 14820ac07820SSatish Balay a->cstart = oldmat->cstart; 14830ac07820SSatish Balay a->cend = oldmat->cend; 14840ac07820SSatish Balay a->size = oldmat->size; 14850ac07820SSatish Balay a->rank = oldmat->rank; 14860ac07820SSatish Balay a->insertmode = NOT_SET_VALUES; 14870ac07820SSatish Balay a->rowvalues = 0; 14880ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 14890ac07820SSatish Balay 14900ac07820SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 14910ac07820SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 14920ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 14930ac07820SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 14940ac07820SSatish Balay ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 14950ac07820SSatish Balay if (oldmat->colmap) { 14960ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 14970ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 14980ac07820SSatish Balay PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int)); 14990ac07820SSatish Balay } else a->colmap = 0; 15000ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 15010ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 15020ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 15030ac07820SSatish Balay PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 15040ac07820SSatish Balay } else a->garray = 0; 15050ac07820SSatish Balay 15060ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 15070ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 15080ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 15090ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 15100ac07820SSatish Balay ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 15110ac07820SSatish Balay PLogObjectParent(mat,a->A); 15120ac07820SSatish Balay ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 15130ac07820SSatish Balay PLogObjectParent(mat,a->B); 15140ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 15150ac07820SSatish Balay if (flg) { 15160ac07820SSatish Balay ierr = MatPrintHelp(mat); CHKERRQ(ierr); 15170ac07820SSatish Balay } 15180ac07820SSatish Balay *newmat = mat; 15190ac07820SSatish Balay return 0; 15200ac07820SSatish Balay } 152157b952d6SSatish Balay 152257b952d6SSatish Balay #include "sys.h" 152357b952d6SSatish Balay 15245615d1e5SSatish Balay #undef __FUNC__ 15255615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 152657b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 152757b952d6SSatish Balay { 152857b952d6SSatish Balay Mat A; 152957b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 153057b952d6SSatish Balay Scalar *vals,*buf; 153157b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 153257b952d6SSatish Balay MPI_Status status; 1533cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 153457b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 153557b952d6SSatish Balay int flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows; 153657b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 153757b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 153857b952d6SSatish Balay 153957b952d6SSatish Balay 154057b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 154157b952d6SSatish Balay bs2 = bs*bs; 154257b952d6SSatish Balay 154357b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 154457b952d6SSatish Balay if (!rank) { 154557b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 154657b952d6SSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr); 1547e3372554SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not matrix object"); 154857b952d6SSatish Balay } 154957b952d6SSatish Balay 155057b952d6SSatish Balay MPI_Bcast(header+1,3,MPI_INT,0,comm); 155157b952d6SSatish Balay M = header[1]; N = header[2]; 155257b952d6SSatish Balay 1553e3372554SBarry Smith if (M != N) SETERRQ(1,0,"Can only do square matrices"); 155457b952d6SSatish Balay 155557b952d6SSatish Balay /* 155657b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 155757b952d6SSatish Balay divisible by the blocksize 155857b952d6SSatish Balay */ 155957b952d6SSatish Balay Mbs = M/bs; 156057b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 156157b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 156257b952d6SSatish Balay else Mbs++; 156357b952d6SSatish Balay if (extra_rows &&!rank) { 1564b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 156557b952d6SSatish Balay } 1566537820f0SBarry Smith 156757b952d6SSatish Balay /* determine ownership of all rows */ 156857b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 156957b952d6SSatish Balay m = mbs * bs; 1570cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 1571cee3aa6bSSatish Balay browners = rowners + size + 1; 157257b952d6SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm); 157357b952d6SSatish Balay rowners[0] = 0; 1574cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 1575cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 157657b952d6SSatish Balay rstart = rowners[rank]; 157757b952d6SSatish Balay rend = rowners[rank+1]; 157857b952d6SSatish Balay 157957b952d6SSatish Balay /* distribute row lengths to all processors */ 158057b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 158157b952d6SSatish Balay if (!rank) { 158257b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 158357b952d6SSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 158457b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 158557b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 1586cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 1587cee3aa6bSSatish Balay MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm); 158857b952d6SSatish Balay PetscFree(sndcounts); 158957b952d6SSatish Balay } 159057b952d6SSatish Balay else { 159157b952d6SSatish Balay MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm); 159257b952d6SSatish Balay } 159357b952d6SSatish Balay 159457b952d6SSatish Balay if (!rank) { 159557b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 159657b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 159757b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 159857b952d6SSatish Balay for ( i=0; i<size; i++ ) { 159957b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 160057b952d6SSatish Balay procsnz[i] += rowlengths[j]; 160157b952d6SSatish Balay } 160257b952d6SSatish Balay } 160357b952d6SSatish Balay PetscFree(rowlengths); 160457b952d6SSatish Balay 160557b952d6SSatish Balay /* determine max buffer needed and allocate it */ 160657b952d6SSatish Balay maxnz = 0; 160757b952d6SSatish Balay for ( i=0; i<size; i++ ) { 160857b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 160957b952d6SSatish Balay } 161057b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 161157b952d6SSatish Balay 161257b952d6SSatish Balay /* read in my part of the matrix column indices */ 161357b952d6SSatish Balay nz = procsnz[0]; 161457b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 161557b952d6SSatish Balay mycols = ibuf; 1616cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 161757b952d6SSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr); 1618cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 1619cee3aa6bSSatish Balay 162057b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 162157b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 162257b952d6SSatish Balay nz = procsnz[i]; 162357b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 162457b952d6SSatish Balay MPI_Send(cols,nz,MPI_INT,i,tag,comm); 162557b952d6SSatish Balay } 162657b952d6SSatish Balay /* read in the stuff for the last proc */ 162757b952d6SSatish Balay if ( size != 1 ) { 162857b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 162957b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 163057b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 1631cee3aa6bSSatish Balay MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm); 163257b952d6SSatish Balay } 163357b952d6SSatish Balay PetscFree(cols); 163457b952d6SSatish Balay } 163557b952d6SSatish Balay else { 163657b952d6SSatish Balay /* determine buffer space needed for message */ 163757b952d6SSatish Balay nz = 0; 163857b952d6SSatish Balay for ( i=0; i<m; i++ ) { 163957b952d6SSatish Balay nz += locrowlens[i]; 164057b952d6SSatish Balay } 164157b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 164257b952d6SSatish Balay mycols = ibuf; 164357b952d6SSatish Balay /* receive message of column indices*/ 164457b952d6SSatish Balay MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 164557b952d6SSatish Balay MPI_Get_count(&status,MPI_INT,&maxnz); 1646e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 164757b952d6SSatish Balay } 164857b952d6SSatish Balay 164957b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 1650cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 1651cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 165257b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 1653cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 165457b952d6SSatish Balay masked1 = mask + Mbs; 165557b952d6SSatish Balay masked2 = masked1 + Mbs; 165657b952d6SSatish Balay rowcount = 0; nzcount = 0; 165757b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 165857b952d6SSatish Balay dcount = 0; 165957b952d6SSatish Balay odcount = 0; 166057b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 166157b952d6SSatish Balay kmax = locrowlens[rowcount]; 166257b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 166357b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 166457b952d6SSatish Balay if (!mask[tmp]) { 166557b952d6SSatish Balay mask[tmp] = 1; 166657b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 166757b952d6SSatish Balay else masked1[dcount++] = tmp; 166857b952d6SSatish Balay } 166957b952d6SSatish Balay } 167057b952d6SSatish Balay rowcount++; 167157b952d6SSatish Balay } 1672cee3aa6bSSatish Balay 167357b952d6SSatish Balay dlens[i] = dcount; 167457b952d6SSatish Balay odlens[i] = odcount; 1675cee3aa6bSSatish Balay 167657b952d6SSatish Balay /* zero out the mask elements we set */ 167757b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 167857b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 167957b952d6SSatish Balay } 1680cee3aa6bSSatish Balay 168157b952d6SSatish Balay /* create our matrix */ 1682537820f0SBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat); 1683537820f0SBarry Smith CHKERRQ(ierr); 168457b952d6SSatish Balay A = *newmat; 16856d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 168657b952d6SSatish Balay 168757b952d6SSatish Balay if (!rank) { 168857b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 168957b952d6SSatish Balay /* read in my part of the matrix numerical values */ 169057b952d6SSatish Balay nz = procsnz[0]; 169157b952d6SSatish Balay vals = buf; 1692cee3aa6bSSatish Balay mycols = ibuf; 1693cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 169457b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 1695cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 1696537820f0SBarry Smith 169757b952d6SSatish Balay /* insert into matrix */ 169857b952d6SSatish Balay jj = rstart*bs; 169957b952d6SSatish Balay for ( i=0; i<m; i++ ) { 170057b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 170157b952d6SSatish Balay mycols += locrowlens[i]; 170257b952d6SSatish Balay vals += locrowlens[i]; 170357b952d6SSatish Balay jj++; 170457b952d6SSatish Balay } 170557b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 170657b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 170757b952d6SSatish Balay nz = procsnz[i]; 170857b952d6SSatish Balay vals = buf; 170957b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 171057b952d6SSatish Balay MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 171157b952d6SSatish Balay } 171257b952d6SSatish Balay /* the last proc */ 171357b952d6SSatish Balay if ( size != 1 ){ 171457b952d6SSatish Balay nz = procsnz[i] - extra_rows; 1715cee3aa6bSSatish Balay vals = buf; 171657b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 171757b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 1718cee3aa6bSSatish Balay MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm); 171957b952d6SSatish Balay } 172057b952d6SSatish Balay PetscFree(procsnz); 172157b952d6SSatish Balay } 172257b952d6SSatish Balay else { 172357b952d6SSatish Balay /* receive numeric values */ 172457b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 172557b952d6SSatish Balay 172657b952d6SSatish Balay /* receive message of values*/ 172757b952d6SSatish Balay vals = buf; 1728cee3aa6bSSatish Balay mycols = ibuf; 172957b952d6SSatish Balay MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 173057b952d6SSatish Balay MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1731e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 173257b952d6SSatish Balay 173357b952d6SSatish Balay /* insert into matrix */ 173457b952d6SSatish Balay jj = rstart*bs; 1735cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 173657b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 173757b952d6SSatish Balay mycols += locrowlens[i]; 173857b952d6SSatish Balay vals += locrowlens[i]; 173957b952d6SSatish Balay jj++; 174057b952d6SSatish Balay } 174157b952d6SSatish Balay } 174257b952d6SSatish Balay PetscFree(locrowlens); 174357b952d6SSatish Balay PetscFree(buf); 174457b952d6SSatish Balay PetscFree(ibuf); 174557b952d6SSatish Balay PetscFree(rowners); 174657b952d6SSatish Balay PetscFree(dlens); 1747cee3aa6bSSatish Balay PetscFree(mask); 17486d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 17496d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 175057b952d6SSatish Balay return 0; 175157b952d6SSatish Balay } 175257b952d6SSatish Balay 175357b952d6SSatish Balay 1754