179bdfe76SSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <petscblaslapack.h> 465a92638SMatthew G. Knepley #include <petscsf.h> 579bdfe76SSatish Balay 609573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 7ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPIBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 909573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1009573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1109573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1209573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1309573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar,Vec,Vec); 1493fea6afSBarry Smith 154a2ae208SSatish Balay #undef __FUNCT__ 16985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 17985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 187843d17aSBarry Smith { 197843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 20dfbe8321SBarry Smith PetscErrorCode ierr; 21985db425SBarry Smith PetscInt i,*idxb = 0; 2287828ca2SBarry Smith PetscScalar *va,*vb; 237843d17aSBarry Smith Vec vtmp; 247843d17aSBarry Smith 257843d17aSBarry Smith PetscFunctionBegin; 26985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 271ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 28985db425SBarry Smith if (idx) { 2926fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 3026fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 3126fbe8dcSKarl Rupp } 32985db425SBarry Smith } 337843d17aSBarry Smith 34d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 35785e854fSJed Brown if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);} 36985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 371ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 387843d17aSBarry Smith 39d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 4026fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 4126fbe8dcSKarl Rupp va[i] = vb[i]; 4226fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 4326fbe8dcSKarl Rupp } 447843d17aSBarry Smith } 457843d17aSBarry Smith 461ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 471ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 48c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 496bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 507843d17aSBarry Smith PetscFunctionReturn(0); 517843d17aSBarry Smith } 527843d17aSBarry Smith 534a2ae208SSatish Balay #undef __FUNCT__ 544a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 557087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 567fc3c18eSBarry Smith { 577fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 58dfbe8321SBarry Smith PetscErrorCode ierr; 597fc3c18eSBarry Smith 607fc3c18eSBarry Smith PetscFunctionBegin; 617fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 627fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 637fc3c18eSBarry Smith PetscFunctionReturn(0); 647fc3c18eSBarry Smith } 657fc3c18eSBarry Smith 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 687087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 697fc3c18eSBarry Smith { 707fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 71dfbe8321SBarry Smith PetscErrorCode ierr; 727fc3c18eSBarry Smith 737fc3c18eSBarry Smith PetscFunctionBegin; 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 757fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 767fc3c18eSBarry Smith PetscFunctionReturn(0); 777fc3c18eSBarry Smith } 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 82e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 86ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private" 87ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 96e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++) { 983861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101785e854fSJed Brown ierr = PetscMalloc1((baij->Nbs+1),&baij->colmap);CHKERRQ(ierr); 1023bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 109f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11080c1aa95SSatish Balay { \ 11180c1aa95SSatish Balay \ 11280c1aa95SSatish Balay brow = row/bs; \ 11380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 114ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11580c1aa95SSatish Balay bcol = col/bs; \ 11680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 117ab26458aSBarry Smith low = 0; high = nrow; \ 118ab26458aSBarry Smith while (high-low > 3) { \ 119ab26458aSBarry Smith t = (low+high)/2; \ 120ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 121ab26458aSBarry Smith else low = t; \ 122ab26458aSBarry Smith } \ 123ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 127eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 128eada6651SSatish Balay else *bap = value; \ 129ac7a638eSSatish Balay goto a_noinsert; \ 13080c1aa95SSatish Balay } \ 13180c1aa95SSatish Balay } \ 13289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 133e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 134fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13580c1aa95SSatish Balay N = nrow++ - 1; \ 13680c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13780c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13880c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1393eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14080c1aa95SSatish Balay } \ 1413eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14280c1aa95SSatish Balay rp[_i] = bcol; \ 14380c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 144ac7a638eSSatish Balay a_noinsert:; \ 14580c1aa95SSatish Balay ailen[brow] = nrow; \ 14680c1aa95SSatish Balay } 14757b952d6SSatish Balay 148ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 149ac7a638eSSatish Balay { \ 150ac7a638eSSatish Balay brow = row/bs; \ 151ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 152ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 153ac7a638eSSatish Balay bcol = col/bs; \ 154ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 155ac7a638eSSatish Balay low = 0; high = nrow; \ 156ac7a638eSSatish Balay while (high-low > 3) { \ 157ac7a638eSSatish Balay t = (low+high)/2; \ 158ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 159ac7a638eSSatish Balay else low = t; \ 160ac7a638eSSatish Balay } \ 161ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 162ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 163ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 164ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 165ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 166ac7a638eSSatish Balay else *bap = value; \ 167ac7a638eSSatish Balay goto b_noinsert; \ 168ac7a638eSSatish Balay } \ 169ac7a638eSSatish Balay } \ 17089280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 171e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 172fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 173ac7a638eSSatish Balay N = nrow++ - 1; \ 174ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 175ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 176ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1773eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 178ac7a638eSSatish Balay } \ 1793eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 180ac7a638eSSatish Balay rp[_i] = bcol; \ 181ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 182ac7a638eSSatish Balay b_noinsert:; \ 183ac7a638eSSatish Balay bilen[brow] = nrow; \ 184ac7a638eSSatish Balay } 185ac7a638eSSatish Balay 1864a2ae208SSatish Balay #undef __FUNCT__ 1874a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 188b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 18957b952d6SSatish Balay { 19057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19193fea6afSBarry Smith MatScalar value; 192ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 193dfbe8321SBarry Smith PetscErrorCode ierr; 194b24ad042SBarry Smith PetscInt i,j,row,col; 195d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 196d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 197d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 19857b952d6SSatish Balay 199eada6651SSatish Balay /* Some Variables required in the macro */ 20080c1aa95SSatish Balay Mat A = baij->A; 20180c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 202b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2033eda8832SBarry Smith MatScalar *aa =a->a; 204ac7a638eSSatish Balay 205ac7a638eSSatish Balay Mat B = baij->B; 206ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 207b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2083eda8832SBarry Smith MatScalar *ba =b->a; 209ac7a638eSSatish Balay 210b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 211b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2123eda8832SBarry Smith MatScalar *ap,*bap; 21380c1aa95SSatish Balay 214d64ed03dSBarry Smith PetscFunctionBegin; 21557b952d6SSatish Balay for (i=0; i<m; i++) { 2165ef9f2a5SBarry Smith if (im[i] < 0) continue; 2172515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 218e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 219639f9d9dSBarry Smith #endif 22057b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22157b952d6SSatish Balay row = im[i] - rstart_orig; 22257b952d6SSatish Balay for (j=0; j<n; j++) { 22357b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 22457b952d6SSatish Balay col = in[j] - cstart_orig; 225db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 226db4deed7SKarl Rupp else value = v[i+j*m]; 227f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22973959e64SBarry Smith } else if (in[j] < 0) continue; 2302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 231660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 232639f9d9dSBarry Smith #endif 23357b952d6SSatish Balay else { 23457b952d6SSatish Balay if (mat->was_assembled) { 235905e6a2fSBarry Smith if (!baij->colmap) { 236ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 237905e6a2fSBarry Smith } 238aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2390f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 240bba1ac68SSatish Balay col = col - 1; 24148e59246SSatish Balay #else 242bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24348e59246SSatish Balay #endif 244c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 245ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2468295de27SSatish Balay col = in[j]; 2479bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2489bf004c3SSatish Balay B = baij->B; 2499bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2509bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2519bf004c3SSatish Balay ba =b->a; 252c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 253c9ef50b2SBarry Smith else col += in[j]%bs; 2548295de27SSatish Balay } else col = in[j]; 255db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 256db4deed7SKarl Rupp else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 2624cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 26390f02eecSBarry Smith if (!baij->donotstash) { 2645080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 265ff2fd236SBarry Smith if (roworiented) { 266b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 267ff2fd236SBarry Smith } else { 268b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27157b952d6SSatish Balay } 27290f02eecSBarry Smith } 2733a40ed3dSBarry Smith PetscFunctionReturn(0); 27457b952d6SSatish Balay } 27557b952d6SSatish Balay 2764a2ae208SSatish Balay #undef __FUNCT__ 27797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 279ab26458aSBarry Smith { 280ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 281dd6ea824SBarry Smith const PetscScalar *value; 282f15d580aSBarry Smith MatScalar *barray = baij->barray; 283ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 284dfbe8321SBarry Smith PetscErrorCode ierr; 285899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 286899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 287d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 288ab26458aSBarry Smith 289b16ae2b1SBarry Smith PetscFunctionBegin; 29030793edcSSatish Balay if (!barray) { 291785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 29282502324SSatish Balay baij->barray = barray; 29330793edcSSatish Balay } 29430793edcSSatish Balay 29526fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 29626fbe8dcSKarl Rupp else stepval = (m-1)*bs; 29726fbe8dcSKarl Rupp 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 301e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 31353ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 314ab26458aSBarry Smith } else { 31553ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 316abef11f7SSatish Balay } 31753ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 31826fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 31953ef36baSBarry Smith barray += bs; 32047513183SBarry Smith } 32130793edcSSatish Balay barray -= bs2; 32215b57d14SSatish Balay } 323abef11f7SSatish Balay 324abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 325abef11f7SSatish Balay col = in[j] - cstart; 32697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 32726fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3282515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 329cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 330ab26458aSBarry Smith #endif 331ab26458aSBarry Smith else { 332ab26458aSBarry Smith if (mat->was_assembled) { 333ab26458aSBarry Smith if (!baij->colmap) { 334ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 335ab26458aSBarry Smith } 336a5eb4965SSatish Balay 3372515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 338aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 339b24ad042SBarry Smith { PetscInt data; 3400f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 341e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 342fa46199cSSatish Balay } 34348e59246SSatish Balay #else 344e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 345a5eb4965SSatish Balay #endif 34648e59246SSatish Balay #endif 347aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3480f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 349fa46199cSSatish Balay col = (col - 1)/bs; 35048e59246SSatish Balay #else 351a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35248e59246SSatish Balay #endif 3530e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 354ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 355ab26458aSBarry Smith col = in[j]; 3560e9bae81SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]); 357db4deed7SKarl Rupp } else col = in[j]; 35897e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 359ab26458aSBarry Smith } 360ab26458aSBarry Smith } 361d64ed03dSBarry Smith } else { 3624cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 363ab26458aSBarry Smith if (!baij->donotstash) { 364ff2fd236SBarry Smith if (roworiented) { 3656fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 366ff2fd236SBarry Smith } else { 3676fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } 369abef11f7SSatish Balay } 370ab26458aSBarry Smith } 371ab26458aSBarry Smith } 3723a40ed3dSBarry Smith PetscFunctionReturn(0); 373ab26458aSBarry Smith } 3746fa18ffdSBarry Smith 3750bdbc534SSatish Balay #define HASH_KEY 0.6180339887 376b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 377b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 378b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3794a2ae208SSatish Balay #undef __FUNCT__ 38097e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38197e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3820bdbc534SSatish Balay { 3830bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 384ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 385dfbe8321SBarry Smith PetscErrorCode ierr; 386b24ad042SBarry Smith PetscInt i,j,row,col; 387d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 388d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 389d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 390329f5518SBarry Smith PetscReal tmp; 3913eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3922515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 393b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3944a15367fSSatish Balay #endif 3950bdbc534SSatish Balay 3960bdbc534SSatish Balay PetscFunctionBegin; 3970bdbc534SSatish Balay for (i=0; i<m; i++) { 3982515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 399e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 400e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4010bdbc534SSatish Balay #endif 4020bdbc534SSatish Balay row = im[i]; 403c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4040bdbc534SSatish Balay for (j=0; j<n; j++) { 4050bdbc534SSatish Balay col = in[j]; 406db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 407db4deed7SKarl Rupp else value = v[i+j*m]; 408b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 409c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 410c2760754SSatish Balay h1 = HASH(size,key,tmp); 4110bdbc534SSatish Balay 412c2760754SSatish Balay 413c2760754SSatish Balay idx = h1; 4142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 415187ce0cbSSatish Balay insert_ct++; 416187ce0cbSSatish Balay total_ct++; 417187ce0cbSSatish Balay if (HT[idx] != key) { 418187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 419187ce0cbSSatish Balay if (idx == size) { 420187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 421f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 422187ce0cbSSatish Balay } 423187ce0cbSSatish Balay } 424187ce0cbSSatish Balay #else 425c2760754SSatish Balay if (HT[idx] != key) { 426c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 427c2760754SSatish Balay if (idx == size) { 428c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 429f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 430c2760754SSatish Balay } 431c2760754SSatish Balay } 432187ce0cbSSatish Balay #endif 433c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 434c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 435c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4360bdbc534SSatish Balay } 43726fbe8dcSKarl Rupp } else if (!baij->donotstash) { 438ff2fd236SBarry Smith if (roworiented) { 439b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 440ff2fd236SBarry Smith } else { 441b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } 4440bdbc534SSatish Balay } 4452515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 446187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 447187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 448187ce0cbSSatish Balay #endif 4490bdbc534SSatish Balay PetscFunctionReturn(0); 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay 4524a2ae208SSatish Balay #undef __FUNCT__ 45397e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 45497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4550bdbc534SSatish Balay { 4560bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 457ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 458dfbe8321SBarry Smith PetscErrorCode ierr; 459b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 460899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 461d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 462b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 463329f5518SBarry Smith PetscReal tmp; 4643eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 465dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4684a15367fSSatish Balay #endif 4690bdbc534SSatish Balay 470d0a41580SSatish Balay PetscFunctionBegin; 47126fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 47226fbe8dcSKarl Rupp else stepval = (m-1)*bs; 47326fbe8dcSKarl Rupp 4740bdbc534SSatish Balay for (i=0; i<m; i++) { 4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 476e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 477e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4780bdbc534SSatish Balay #endif 4790bdbc534SSatish Balay row = im[i]; 480ab715e2cSSatish Balay v_t = v + i*nbs2; 481c2760754SSatish Balay if (row >= rstart && row < rend) { 4820bdbc534SSatish Balay for (j=0; j<n; j++) { 4830bdbc534SSatish Balay col = in[j]; 4840bdbc534SSatish Balay 4850bdbc534SSatish Balay /* Look up into the Hash Table */ 486c2760754SSatish Balay key = row*Nbs+col+1; 487c2760754SSatish Balay h1 = HASH(size,key,tmp); 4880bdbc534SSatish Balay 489c2760754SSatish Balay idx = h1; 4902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 491187ce0cbSSatish Balay total_ct++; 492187ce0cbSSatish Balay insert_ct++; 493187ce0cbSSatish Balay if (HT[idx] != key) { 494187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 495187ce0cbSSatish Balay if (idx == size) { 496187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 497f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 498187ce0cbSSatish Balay } 499187ce0cbSSatish Balay } 500187ce0cbSSatish Balay #else 501c2760754SSatish Balay if (HT[idx] != key) { 502c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 503c2760754SSatish Balay if (idx == size) { 504c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 505f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 506c2760754SSatish Balay } 507c2760754SSatish Balay } 508187ce0cbSSatish Balay #endif 509c2760754SSatish Balay baij_a = HD[idx]; 5100bdbc534SSatish Balay if (roworiented) { 511c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 512187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 513187ce0cbSSatish Balay value = v_t; 514187ce0cbSSatish Balay v_t += bs; 515fef45726SSatish Balay if (addv == ADD_VALUES) { 516c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 517c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 518fef45726SSatish Balay baij_a[jj] += *value++; 519b4cc0f5aSSatish Balay } 520b4cc0f5aSSatish Balay } 521fef45726SSatish Balay } else { 522c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 523c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 524fef45726SSatish Balay baij_a[jj] = *value++; 525fef45726SSatish Balay } 526fef45726SSatish Balay } 527fef45726SSatish Balay } 5280bdbc534SSatish Balay } else { 5290bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5320bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534fef45726SSatish Balay } 535fef45726SSatish Balay } 536fef45726SSatish Balay } else { 537fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 538fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541b4cc0f5aSSatish Balay } 5420bdbc534SSatish Balay } 5430bdbc534SSatish Balay } 5440bdbc534SSatish Balay } 5450bdbc534SSatish Balay } else { 5460bdbc534SSatish Balay if (!baij->donotstash) { 5470bdbc534SSatish Balay if (roworiented) { 5488798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5490bdbc534SSatish Balay } else { 5508798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5510bdbc534SSatish Balay } 5520bdbc534SSatish Balay } 5530bdbc534SSatish Balay } 5540bdbc534SSatish Balay } 5552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 556187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 557187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 558187ce0cbSSatish Balay #endif 5590bdbc534SSatish Balay PetscFunctionReturn(0); 5600bdbc534SSatish Balay } 561133cdb44SSatish Balay 5624a2ae208SSatish Balay #undef __FUNCT__ 5634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 564b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 565d6de1c52SSatish Balay { 566d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5676849ba73SBarry Smith PetscErrorCode ierr; 568d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 569d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 570d6de1c52SSatish Balay 571133cdb44SSatish Balay PetscFunctionBegin; 572d6de1c52SSatish Balay for (i=0; i<m; i++) { 573e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 574e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 575d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 576d6de1c52SSatish Balay row = idxm[i] - bsrstart; 577d6de1c52SSatish Balay for (j=0; j<n; j++) { 578e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 579e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 580d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 581d6de1c52SSatish Balay col = idxn[j] - bscstart; 58298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 583d64ed03dSBarry Smith } else { 584905e6a2fSBarry Smith if (!baij->colmap) { 585ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 586905e6a2fSBarry Smith } 587aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 5880f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 589fa46199cSSatish Balay data--; 59048e59246SSatish Balay #else 59148e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 59248e59246SSatish Balay #endif 59348e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 594d9d09a02SSatish Balay else { 59548e59246SSatish Balay col = data + idxn[j]%bs; 59698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 597d6de1c52SSatish Balay } 598d6de1c52SSatish Balay } 599d6de1c52SSatish Balay } 600f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 601d6de1c52SSatish Balay } 6023a40ed3dSBarry Smith PetscFunctionReturn(0); 603d6de1c52SSatish Balay } 604d6de1c52SSatish Balay 6054a2ae208SSatish Balay #undef __FUNCT__ 6064a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 607dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 608d6de1c52SSatish Balay { 609d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 610d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 611dfbe8321SBarry Smith PetscErrorCode ierr; 612d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 613329f5518SBarry Smith PetscReal sum = 0.0; 6143eda8832SBarry Smith MatScalar *v; 615d6de1c52SSatish Balay 616d64ed03dSBarry Smith PetscFunctionBegin; 617d6de1c52SSatish Balay if (baij->size == 1) { 618064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 619d6de1c52SSatish Balay } else { 620d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 621d6de1c52SSatish Balay v = amat->a; 6228a62d963SHong Zhang nz = amat->nz*bs2; 6238a62d963SHong Zhang for (i=0; i<nz; i++) { 624329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 625d6de1c52SSatish Balay } 626d6de1c52SSatish Balay v = bmat->a; 6278a62d963SHong Zhang nz = bmat->nz*bs2; 6288a62d963SHong Zhang for (i=0; i<nz; i++) { 629329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 630d6de1c52SSatish Balay } 631ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6328f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6338a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6348a62d963SHong Zhang PetscReal *tmp,*tmp2; 635899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 636dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr); 637d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6388a62d963SHong Zhang v = amat->a; jj = amat->j; 6398a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6408a62d963SHong Zhang for (j=0; j<bs; j++) { 6418a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6428a62d963SHong Zhang for (row=0; row<bs; row++) { 6438a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6448a62d963SHong Zhang } 6458a62d963SHong Zhang } 6468a62d963SHong Zhang jj++; 6478a62d963SHong Zhang } 6488a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6498a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6508a62d963SHong Zhang for (j=0; j<bs; j++) { 6518a62d963SHong Zhang col = bs*garray[*jj] + j; 6528a62d963SHong Zhang for (row=0; row<bs; row++) { 6538a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6548a62d963SHong Zhang } 6558a62d963SHong Zhang } 6568a62d963SHong Zhang jj++; 6578a62d963SHong Zhang } 658ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6598a62d963SHong Zhang *nrm = 0.0; 660d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6618a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6628a62d963SHong Zhang } 663fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6648a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 665577dd1f9SKris Buschelman PetscReal *sums; 666785e854fSJed Brown ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr); 6678a62d963SHong Zhang sum = 0.0; 6688a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6698a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6708a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6718a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6728a62d963SHong Zhang for (i=0; i<nz; i++) { 6738a62d963SHong Zhang for (col=0; col<bs; col++) { 6748a62d963SHong Zhang for (row=0; row<bs; row++) { 6758a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6768a62d963SHong Zhang } 6778a62d963SHong Zhang } 6788a62d963SHong Zhang } 6798a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 6808a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 6818a62d963SHong Zhang for (i=0; i<nz; i++) { 6828a62d963SHong Zhang for (col=0; col<bs; col++) { 6838a62d963SHong Zhang for (row=0; row<bs; row++) { 6848a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6858a62d963SHong Zhang } 6868a62d963SHong Zhang } 6878a62d963SHong Zhang } 6888a62d963SHong Zhang for (row=0; row<bs; row++) { 6898a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 6908a62d963SHong Zhang } 6918a62d963SHong Zhang } 692ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 693577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 694ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 695d64ed03dSBarry Smith } 6963a40ed3dSBarry Smith PetscFunctionReturn(0); 697d6de1c52SSatish Balay } 69857b952d6SSatish Balay 699fef45726SSatish Balay /* 700fef45726SSatish Balay Creates the hash table, and sets the table 701fef45726SSatish Balay This table is created only once. 702fef45726SSatish Balay If new entried need to be added to the matrix 703fef45726SSatish Balay then the hash table has to be destroyed and 704fef45726SSatish Balay recreated. 705fef45726SSatish Balay */ 7064a2ae208SSatish Balay #undef __FUNCT__ 7074a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 708dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 709596b8d2eSBarry Smith { 710596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 711596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 712596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 713b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7146849ba73SBarry Smith PetscErrorCode ierr; 715fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 716899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 717b24ad042SBarry Smith PetscInt *HT,key; 7183eda8832SBarry Smith MatScalar **HD; 719329f5518SBarry Smith PetscReal tmp; 7206cf91177SBarry Smith #if defined(PETSC_USE_INFO) 721b24ad042SBarry Smith PetscInt ct=0,max=0; 7224a15367fSSatish Balay #endif 723fef45726SSatish Balay 724d64ed03dSBarry Smith PetscFunctionBegin; 725fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 726fef45726SSatish Balay 727fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 728fca92195SBarry Smith ht_size = baij->ht_size; 7290bdbc534SSatish Balay 730fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7311795a4d1SJed Brown ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 732b9e4cc15SSatish Balay HD = baij->hd; 733a07cd24cSSatish Balay HT = baij->ht; 734b9e4cc15SSatish Balay 735596b8d2eSBarry Smith /* Loop Over A */ 7360bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 737596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7380bdbc534SSatish Balay row = i+rstart; 7390bdbc534SSatish Balay col = aj[j]+cstart; 740596b8d2eSBarry Smith 741187ce0cbSSatish Balay key = row*Nbs + col + 1; 742fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 743fca92195SBarry Smith for (k=0; k<ht_size; k++) { 744fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 745fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 746fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 747596b8d2eSBarry Smith break; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749187ce0cbSSatish Balay } else { 750187ce0cbSSatish Balay ct++; 751187ce0cbSSatish Balay #endif 752596b8d2eSBarry Smith } 753187ce0cbSSatish Balay } 7546cf91177SBarry Smith #if defined(PETSC_USE_INFO) 755187ce0cbSSatish Balay if (k> max) max = k; 756187ce0cbSSatish Balay #endif 757596b8d2eSBarry Smith } 758596b8d2eSBarry Smith } 759596b8d2eSBarry Smith /* Loop Over B */ 7600bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 761596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7620bdbc534SSatish Balay row = i+rstart; 7630bdbc534SSatish Balay col = garray[bj[j]]; 764187ce0cbSSatish Balay key = row*Nbs + col + 1; 765fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 766fca92195SBarry Smith for (k=0; k<ht_size; k++) { 767fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 768fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 769fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 770596b8d2eSBarry Smith break; 7716cf91177SBarry Smith #if defined(PETSC_USE_INFO) 772187ce0cbSSatish Balay } else { 773187ce0cbSSatish Balay ct++; 774187ce0cbSSatish Balay #endif 775596b8d2eSBarry Smith } 776187ce0cbSSatish Balay } 7776cf91177SBarry Smith #if defined(PETSC_USE_INFO) 778187ce0cbSSatish Balay if (k> max) max = k; 779187ce0cbSSatish Balay #endif 780596b8d2eSBarry Smith } 781596b8d2eSBarry Smith } 782596b8d2eSBarry Smith 783596b8d2eSBarry Smith /* Print Summary */ 7846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 785fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 78626fbe8dcSKarl Rupp if (HT[i]) j++; 787c38d4ed2SBarry Smith } 7881e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 789187ce0cbSSatish Balay #endif 7903a40ed3dSBarry Smith PetscFunctionReturn(0); 791596b8d2eSBarry Smith } 79257b952d6SSatish Balay 7934a2ae208SSatish Balay #undef __FUNCT__ 7944a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 795dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 796bbb85fb3SSatish Balay { 797bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 798dfbe8321SBarry Smith PetscErrorCode ierr; 799b24ad042SBarry Smith PetscInt nstash,reallocs; 800bbb85fb3SSatish Balay InsertMode addv; 801bbb85fb3SSatish Balay 802bbb85fb3SSatish Balay PetscFunctionBegin; 80326fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 804bbb85fb3SSatish Balay 805bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 806ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 807ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 808bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 809bbb85fb3SSatish Balay 810d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8111e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8128798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8131e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 81446680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8151e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 816bbb85fb3SSatish Balay PetscFunctionReturn(0); 817bbb85fb3SSatish Balay } 818bbb85fb3SSatish Balay 8194a2ae208SSatish Balay #undef __FUNCT__ 8204a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 821dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 822bbb85fb3SSatish Balay { 823bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 82491c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 8256849ba73SBarry Smith PetscErrorCode ierr; 826b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 827e44c0bd4SBarry Smith PetscInt *row,*col; 828ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8293eda8832SBarry Smith MatScalar *val; 830bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 831b24ad042SBarry Smith PetscMPIInt n; 832bbb85fb3SSatish Balay 833bbb85fb3SSatish Balay PetscFunctionBegin; 8345fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8354cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 836a2d1c673SSatish Balay while (1) { 8378798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 838a2d1c673SSatish Balay if (!flg) break; 839a2d1c673SSatish Balay 840bbb85fb3SSatish Balay for (i=0; i<n;) { 841bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 84226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 84326fbe8dcSKarl Rupp if (row[j] != rstart) break; 84426fbe8dcSKarl Rupp } 845bbb85fb3SSatish Balay if (j < n) ncols = j-i; 846bbb85fb3SSatish Balay else ncols = n-i; 847bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 84897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 849bbb85fb3SSatish Balay i = j; 850bbb85fb3SSatish Balay } 851bbb85fb3SSatish Balay } 8528798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 853a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 854a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 855a2d1c673SSatish Balay restore the original flags */ 856a2d1c673SSatish Balay r1 = baij->roworiented; 857a2d1c673SSatish Balay r2 = a->roworiented; 85891c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 85926fbe8dcSKarl Rupp 8607c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8617c922b88SBarry Smith a->roworiented = PETSC_FALSE; 86226fbe8dcSKarl Rupp 86391c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 864a2d1c673SSatish Balay while (1) { 8658798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 866a2d1c673SSatish Balay if (!flg) break; 867a2d1c673SSatish Balay 868a2d1c673SSatish Balay for (i=0; i<n;) { 869a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87026fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 87126fbe8dcSKarl Rupp if (row[j] != rstart) break; 87226fbe8dcSKarl Rupp } 873a2d1c673SSatish Balay if (j < n) ncols = j-i; 874a2d1c673SSatish Balay else ncols = n-i; 87597e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 876a2d1c673SSatish Balay i = j; 877a2d1c673SSatish Balay } 878a2d1c673SSatish Balay } 8798798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 88026fbe8dcSKarl Rupp 881a2d1c673SSatish Balay baij->roworiented = r1; 882a2d1c673SSatish Balay a->roworiented = r2; 88326fbe8dcSKarl Rupp 88491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 885bbb85fb3SSatish Balay } 886bbb85fb3SSatish Balay 887bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 888bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 889bbb85fb3SSatish Balay 890bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 891bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 892bbb85fb3SSatish Balay /* 893bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 894bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 895bbb85fb3SSatish Balay */ 896bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 897ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 898bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 899ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 900bbb85fb3SSatish Balay } 901bbb85fb3SSatish Balay } 902bbb85fb3SSatish Balay 903bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 904bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 905bbb85fb3SSatish Balay } 906bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 907bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 908bbb85fb3SSatish Balay 9096cf91177SBarry Smith #if defined(PETSC_USE_INFO) 910bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9111e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 91226fbe8dcSKarl Rupp 913bbb85fb3SSatish Balay baij->ht_total_ct = 0; 914bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 915bbb85fb3SSatish Balay } 916bbb85fb3SSatish Balay #endif 917bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 918bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 91926fbe8dcSKarl Rupp 920bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 921bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 922bbb85fb3SSatish Balay } 923bbb85fb3SSatish Balay 924fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 92526fbe8dcSKarl Rupp 926606d414cSSatish Balay baij->rowvalues = 0; 9274f9cfa9eSBarry Smith 9284f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9294f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 930e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 93109e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 932e56f5c9eSBarry Smith } 933bbb85fb3SSatish Balay PetscFunctionReturn(0); 934bbb85fb3SSatish Balay } 93557b952d6SSatish Balay 9367da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9379804daf3SBarry Smith #include <petscdraw.h> 9384a2ae208SSatish Balay #undef __FUNCT__ 9394a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9406849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 94157b952d6SSatish Balay { 94257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 943dfbe8321SBarry Smith PetscErrorCode ierr; 9447da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 945d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 946ace3abfcSBarry Smith PetscBool iascii,isdraw; 947b0a32e0cSBarry Smith PetscViewer sviewer; 948f3ef73ceSBarry Smith PetscViewerFormat format; 94957b952d6SSatish Balay 950d64ed03dSBarry Smith PetscFunctionBegin; 951251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 952251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 95332077d6dSBarry Smith if (iascii) { 954b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 955456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9564e220ebcSLois Curfman McInnes MatInfo info; 957ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 958d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9597b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 96077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 96116608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 962d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 963e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 964d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 965e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 966b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9677b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 96807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 96957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9703a40ed3dSBarry Smith PetscFunctionReturn(0); 971fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 97277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9733a40ed3dSBarry Smith PetscFunctionReturn(0); 97404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 97504929863SHong Zhang PetscFunctionReturn(0); 97657b952d6SSatish Balay } 97757b952d6SSatish Balay } 97857b952d6SSatish Balay 9790f5bd95cSBarry Smith if (isdraw) { 980b0a32e0cSBarry Smith PetscDraw draw; 981ace3abfcSBarry Smith PetscBool isnull; 982b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 983b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 98457b952d6SSatish Balay } 98557b952d6SSatish Balay 9867da1fb6eSBarry Smith { 98757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 98857b952d6SSatish Balay Mat A; 98957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 990d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 9913eda8832SBarry Smith MatScalar *a; 99257b952d6SSatish Balay 993f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 994f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 995ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 99657b952d6SSatish Balay if (!rank) { 997f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 998d64ed03dSBarry Smith } else { 999f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 100057b952d6SSatish Balay } 1001f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 10020298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 10032b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 10043bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 100557b952d6SSatish Balay 100657b952d6SSatish Balay /* copy over the A part */ 100757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 100857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1009785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 101057b952d6SSatish Balay 101157b952d6SSatish Balay for (i=0; i<mbs; i++) { 1012899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 101326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 101457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1015899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 101657b952d6SSatish Balay for (k=0; k<bs; k++) { 101797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1018cee3aa6bSSatish Balay col++; a += bs; 101957b952d6SSatish Balay } 102057b952d6SSatish Balay } 102157b952d6SSatish Balay } 102257b952d6SSatish Balay /* copy over the B part */ 102357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 102457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 102557b952d6SSatish Balay for (i=0; i<mbs; i++) { 1026899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 102726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 102857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 102957b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 103057b952d6SSatish Balay for (k=0; k<bs; k++) { 103197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1032cee3aa6bSSatish Balay col++; a += bs; 103357b952d6SSatish Balay } 103457b952d6SSatish Balay } 103557b952d6SSatish Balay } 1036606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10376d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10386d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 103955843e3eSBarry Smith /* 104055843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1041b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 104255843e3eSBarry Smith */ 1043b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1044f14a1c24SBarry Smith if (!rank) { 10457da1fb6eSBarry Smith ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 104657b952d6SSatish Balay } 1047b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 10486bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 104957b952d6SSatish Balay } 10503a40ed3dSBarry Smith PetscFunctionReturn(0); 105157b952d6SSatish Balay } 105257b952d6SSatish Balay 10534a2ae208SSatish Balay #undef __FUNCT__ 1054660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary" 1055660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1056660746e0SBarry Smith { 1057660746e0SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 1058660746e0SBarry Smith Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)a->A->data; 1059660746e0SBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 1060660746e0SBarry Smith PetscErrorCode ierr; 10615f48b12bSBarry Smith PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 1062e96a6426SSatish Balay PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 1063660746e0SBarry Smith int fd; 1064660746e0SBarry Smith PetscScalar *column_values; 1065660746e0SBarry Smith FILE *file; 1066660746e0SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1067638eb2ebSBarry Smith PetscInt message_count,flowcontrolcount; 1068660746e0SBarry Smith 1069660746e0SBarry Smith PetscFunctionBegin; 1070ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1071ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 1072660746e0SBarry Smith nz = bs2*(A->nz + B->nz); 1073660746e0SBarry Smith rlen = mat->rmap->n; 1074660746e0SBarry Smith if (!rank) { 1075660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1076660746e0SBarry Smith header[1] = mat->rmap->N; 1077660746e0SBarry Smith header[2] = mat->cmap->N; 107826fbe8dcSKarl Rupp 1079ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1080660746e0SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1081660746e0SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1082660746e0SBarry Smith /* get largest number of rows any processor has */ 1083660746e0SBarry Smith range = mat->rmap->range; 1084660746e0SBarry Smith for (i=1; i<size; i++) { 1085660746e0SBarry Smith rlen = PetscMax(rlen,range[i+1] - range[i]); 1086660746e0SBarry Smith } 1087660746e0SBarry Smith } else { 1088ce94432eSBarry Smith ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1089660746e0SBarry Smith } 1090660746e0SBarry Smith 1091785e854fSJed Brown ierr = PetscMalloc1((rlen/bs),&crow_lens);CHKERRQ(ierr); 1092660746e0SBarry Smith /* compute lengths of each row */ 1093660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1094660746e0SBarry Smith crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1095660746e0SBarry Smith } 1096660746e0SBarry Smith /* store the row lengths to the file */ 1097638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1098660746e0SBarry Smith if (!rank) { 1099660746e0SBarry Smith MPI_Status status; 1100785e854fSJed Brown ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 1101660746e0SBarry Smith rlen = (range[1] - range[0])/bs; 1102660746e0SBarry Smith for (i=0; i<rlen; i++) { 1103660746e0SBarry Smith for (j=0; j<bs; j++) { 1104660746e0SBarry Smith row_lens[i*bs+j] = bs*crow_lens[i]; 1105660746e0SBarry Smith } 1106660746e0SBarry Smith } 1107660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1108660746e0SBarry Smith for (i=1; i<size; i++) { 1109660746e0SBarry Smith rlen = (range[i+1] - range[i])/bs; 1110639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1111ce94432eSBarry Smith ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1112660746e0SBarry Smith for (k=0; k<rlen; k++) { 1113660746e0SBarry Smith for (j=0; j<bs; j++) { 1114660746e0SBarry Smith row_lens[k*bs+j] = bs*crow_lens[k]; 1115660746e0SBarry Smith } 1116660746e0SBarry Smith } 1117660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1118660746e0SBarry Smith } 1119639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1120660746e0SBarry Smith ierr = PetscFree(row_lens);CHKERRQ(ierr); 1121660746e0SBarry Smith } else { 1122639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1123ce94432eSBarry Smith ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1124639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1125660746e0SBarry Smith } 1126660746e0SBarry Smith ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1127660746e0SBarry Smith 1128660746e0SBarry Smith /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1129660746e0SBarry Smith information needed to make it for each row from a block row. This does require more communication but still not more than 1130660746e0SBarry Smith the communication needed for the nonzero values */ 1131660746e0SBarry Smith nzmax = nz; /* space a largest processor needs */ 1132ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1133785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 1134660746e0SBarry Smith cnt = 0; 1135660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1136660746e0SBarry Smith pcnt = cnt; 1137660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1138660746e0SBarry Smith if ((col = garray[B->j[j]]) > cstart) break; 1139660746e0SBarry Smith for (l=0; l<bs; l++) { 1140660746e0SBarry Smith column_indices[cnt++] = bs*col+l; 1141660746e0SBarry Smith } 1142660746e0SBarry Smith } 1143660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1144660746e0SBarry Smith for (l=0; l<bs; l++) { 1145660746e0SBarry Smith column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1146660746e0SBarry Smith } 1147660746e0SBarry Smith } 1148660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1149660746e0SBarry Smith for (l=0; l<bs; l++) { 1150660746e0SBarry Smith column_indices[cnt++] = bs*garray[B->j[j]]+l; 1151660746e0SBarry Smith } 1152660746e0SBarry Smith } 1153660746e0SBarry Smith len = cnt - pcnt; 1154660746e0SBarry Smith for (k=1; k<bs; k++) { 1155660746e0SBarry Smith ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1156660746e0SBarry Smith cnt += len; 1157660746e0SBarry Smith } 1158660746e0SBarry Smith } 1159660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1160660746e0SBarry Smith 1161660746e0SBarry Smith /* store the columns to the file */ 1162638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1163660746e0SBarry Smith if (!rank) { 1164660746e0SBarry Smith MPI_Status status; 1165660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1166660746e0SBarry Smith for (i=1; i<size; i++) { 1167639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1168ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1169ce94432eSBarry Smith ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1170660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1171660746e0SBarry Smith } 1172639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1173660746e0SBarry Smith } else { 1174639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1175ce94432eSBarry Smith ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1176ce94432eSBarry Smith ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1177639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1178660746e0SBarry Smith } 1179660746e0SBarry Smith ierr = PetscFree(column_indices);CHKERRQ(ierr); 1180660746e0SBarry Smith 1181660746e0SBarry Smith /* load up the numerical values */ 1182785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1183660746e0SBarry Smith cnt = 0; 1184660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1185660746e0SBarry Smith rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1186660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1187660746e0SBarry Smith if (garray[B->j[j]] > cstart) break; 1188660746e0SBarry Smith for (l=0; l<bs; l++) { 1189660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1190660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1191660746e0SBarry Smith } 1192660746e0SBarry Smith } 1193660746e0SBarry Smith cnt += bs; 1194660746e0SBarry Smith } 1195660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1196660746e0SBarry Smith for (l=0; l<bs; l++) { 1197660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1198660746e0SBarry Smith column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1199660746e0SBarry Smith } 1200660746e0SBarry Smith } 1201660746e0SBarry Smith cnt += bs; 1202660746e0SBarry Smith } 1203660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1204660746e0SBarry Smith for (l=0; l<bs; l++) { 1205660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1206660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1207660746e0SBarry Smith } 1208660746e0SBarry Smith } 1209660746e0SBarry Smith cnt += bs; 1210660746e0SBarry Smith } 1211660746e0SBarry Smith cnt += (bs-1)*rlen; 1212660746e0SBarry Smith } 1213660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1214660746e0SBarry Smith 1215660746e0SBarry Smith /* store the column values to the file */ 1216638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1217660746e0SBarry Smith if (!rank) { 1218660746e0SBarry Smith MPI_Status status; 1219660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1220660746e0SBarry Smith for (i=1; i<size; i++) { 1221639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1222ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1223ce94432eSBarry Smith ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1224660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1225660746e0SBarry Smith } 1226639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1227660746e0SBarry Smith } else { 1228639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1229ce94432eSBarry Smith ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1230ce94432eSBarry Smith ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1231639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1232660746e0SBarry Smith } 1233660746e0SBarry Smith ierr = PetscFree(column_values);CHKERRQ(ierr); 1234660746e0SBarry Smith 1235660746e0SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1236660746e0SBarry Smith if (file) { 1237660746e0SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1238660746e0SBarry Smith } 1239660746e0SBarry Smith PetscFunctionReturn(0); 1240660746e0SBarry Smith } 1241660746e0SBarry Smith 1242660746e0SBarry Smith #undef __FUNCT__ 12434a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1244dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 124557b952d6SSatish Balay { 1246dfbe8321SBarry Smith PetscErrorCode ierr; 1247ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 124857b952d6SSatish Balay 1249d64ed03dSBarry Smith PetscFunctionBegin; 1250251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1251251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1252251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1253251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1254660746e0SBarry Smith if (iascii || isdraw || issocket) { 12557b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1256660746e0SBarry Smith } else if (isbinary) { 1257660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 125857b952d6SSatish Balay } 12593a40ed3dSBarry Smith PetscFunctionReturn(0); 126057b952d6SSatish Balay } 126157b952d6SSatish Balay 12624a2ae208SSatish Balay #undef __FUNCT__ 12634a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1264dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 126579bdfe76SSatish Balay { 126679bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1267dfbe8321SBarry Smith PetscErrorCode ierr; 126879bdfe76SSatish Balay 1269d64ed03dSBarry Smith PetscFunctionBegin; 1270aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1271d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 127279bdfe76SSatish Balay #endif 12738798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12748798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12756bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12766bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1277aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 12786bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 127948e59246SSatish Balay #else 128005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 128148e59246SSatish Balay #endif 128205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12836bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12846bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1285fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 128605b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1287fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1288899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1289bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1290901853e0SKris Buschelman 1291dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1292bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1293bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1294bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 1295bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1296bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1297bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1298bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1299bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1300bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 13013a40ed3dSBarry Smith PetscFunctionReturn(0); 130279bdfe76SSatish Balay } 130379bdfe76SSatish Balay 13044a2ae208SSatish Balay #undef __FUNCT__ 13054a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1306dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1307cee3aa6bSSatish Balay { 1308cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1309dfbe8321SBarry Smith PetscErrorCode ierr; 1310b24ad042SBarry Smith PetscInt nt; 1311cee3aa6bSSatish Balay 1312d64ed03dSBarry Smith PetscFunctionBegin; 1313e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1314e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1315e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1316e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1317ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1318f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1319ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1320f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 13213a40ed3dSBarry Smith PetscFunctionReturn(0); 1322cee3aa6bSSatish Balay } 1323cee3aa6bSSatish Balay 13244a2ae208SSatish Balay #undef __FUNCT__ 13254a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1326dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1327cee3aa6bSSatish Balay { 1328cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1329dfbe8321SBarry Smith PetscErrorCode ierr; 1330d64ed03dSBarry Smith 1331d64ed03dSBarry Smith PetscFunctionBegin; 1332ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1333f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1334ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1335f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337cee3aa6bSSatish Balay } 1338cee3aa6bSSatish Balay 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1341dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1342cee3aa6bSSatish Balay { 1343cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1344dfbe8321SBarry Smith PetscErrorCode ierr; 1345ace3abfcSBarry Smith PetscBool merged; 1346cee3aa6bSSatish Balay 1347d64ed03dSBarry Smith PetscFunctionBegin; 1348a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1349cee3aa6bSSatish Balay /* do nondiagonal part */ 13507c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1351a5ff213dSBarry Smith if (!merged) { 1352cee3aa6bSSatish Balay /* send it on its way */ 1353ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1354cee3aa6bSSatish Balay /* do local part */ 13557c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1356cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1357a5ff213dSBarry Smith /* inserted in yy until the next line */ 1358ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1359a5ff213dSBarry Smith } else { 1360a5ff213dSBarry Smith /* do local part */ 1361a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1362a5ff213dSBarry Smith /* send it on its way */ 1363ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1364a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1365ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1366a5ff213dSBarry Smith } 13673a40ed3dSBarry Smith PetscFunctionReturn(0); 1368cee3aa6bSSatish Balay } 1369cee3aa6bSSatish Balay 13704a2ae208SSatish Balay #undef __FUNCT__ 13714a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1372dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1373cee3aa6bSSatish Balay { 1374cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1375dfbe8321SBarry Smith PetscErrorCode ierr; 1376cee3aa6bSSatish Balay 1377d64ed03dSBarry Smith PetscFunctionBegin; 1378cee3aa6bSSatish Balay /* do nondiagonal part */ 13797c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1380cee3aa6bSSatish Balay /* send it on its way */ 1381ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1382cee3aa6bSSatish Balay /* do local part */ 13837c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1384cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1385cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1386cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1387ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 13883a40ed3dSBarry Smith PetscFunctionReturn(0); 1389cee3aa6bSSatish Balay } 1390cee3aa6bSSatish Balay 1391cee3aa6bSSatish Balay /* 1392cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1393cee3aa6bSSatish Balay diagonal block 1394cee3aa6bSSatish Balay */ 13954a2ae208SSatish Balay #undef __FUNCT__ 13964a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1397dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1398cee3aa6bSSatish Balay { 1399cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1400dfbe8321SBarry Smith PetscErrorCode ierr; 1401d64ed03dSBarry Smith 1402d64ed03dSBarry Smith PetscFunctionBegin; 1403e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 14043a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 14053a40ed3dSBarry Smith PetscFunctionReturn(0); 1406cee3aa6bSSatish Balay } 1407cee3aa6bSSatish Balay 14084a2ae208SSatish Balay #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1410f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1411cee3aa6bSSatish Balay { 1412cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1413dfbe8321SBarry Smith PetscErrorCode ierr; 1414d64ed03dSBarry Smith 1415d64ed03dSBarry Smith PetscFunctionBegin; 1416f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1417f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 14183a40ed3dSBarry Smith PetscFunctionReturn(0); 1419cee3aa6bSSatish Balay } 1420026e39d0SSatish Balay 14214a2ae208SSatish Balay #undef __FUNCT__ 14224a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1423b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1424acdf5bf4SSatish Balay { 1425acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 142687828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 14276849ba73SBarry Smith PetscErrorCode ierr; 1428d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1429d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1430899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1431acdf5bf4SSatish Balay 1432d64ed03dSBarry Smith PetscFunctionBegin; 1433e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1434e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1435acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1436acdf5bf4SSatish Balay 1437acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1438acdf5bf4SSatish Balay /* 1439acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1440acdf5bf4SSatish Balay */ 1441acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1442b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1443bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1444acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 144526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1446acdf5bf4SSatish Balay } 1447dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1448acdf5bf4SSatish Balay } 1449d9d09a02SSatish Balay lrow = row - brstart; 1450acdf5bf4SSatish Balay 1451acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1452acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1453acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1454f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1455f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1456acdf5bf4SSatish Balay nztot = nzA + nzB; 1457acdf5bf4SSatish Balay 1458acdf5bf4SSatish Balay cmap = mat->garray; 1459acdf5bf4SSatish Balay if (v || idx) { 1460acdf5bf4SSatish Balay if (nztot) { 1461acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1462b24ad042SBarry Smith PetscInt imark = -1; 1463acdf5bf4SSatish Balay if (v) { 1464acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1465acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1466d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1467acdf5bf4SSatish Balay else break; 1468acdf5bf4SSatish Balay } 1469acdf5bf4SSatish Balay imark = i; 1470acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1471acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1472acdf5bf4SSatish Balay } 1473acdf5bf4SSatish Balay if (idx) { 1474acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1475acdf5bf4SSatish Balay if (imark > -1) { 1476acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1477bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1478acdf5bf4SSatish Balay } 1479acdf5bf4SSatish Balay } else { 1480acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 148126fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1482acdf5bf4SSatish Balay else break; 1483acdf5bf4SSatish Balay } 1484acdf5bf4SSatish Balay imark = i; 1485acdf5bf4SSatish Balay } 1486d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1487d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1488acdf5bf4SSatish Balay } 1489d64ed03dSBarry Smith } else { 1490d212a18eSSatish Balay if (idx) *idx = 0; 1491d212a18eSSatish Balay if (v) *v = 0; 1492d212a18eSSatish Balay } 1493acdf5bf4SSatish Balay } 1494acdf5bf4SSatish Balay *nz = nztot; 1495f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1496f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14973a40ed3dSBarry Smith PetscFunctionReturn(0); 1498acdf5bf4SSatish Balay } 1499acdf5bf4SSatish Balay 15004a2ae208SSatish Balay #undef __FUNCT__ 15014a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1502b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1503acdf5bf4SSatish Balay { 1504acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1505d64ed03dSBarry Smith 1506d64ed03dSBarry Smith PetscFunctionBegin; 1507e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1508acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 15093a40ed3dSBarry Smith PetscFunctionReturn(0); 1510acdf5bf4SSatish Balay } 1511acdf5bf4SSatish Balay 15124a2ae208SSatish Balay #undef __FUNCT__ 15134a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1514dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 151558667388SSatish Balay { 151658667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1517dfbe8321SBarry Smith PetscErrorCode ierr; 1518d64ed03dSBarry Smith 1519d64ed03dSBarry Smith PetscFunctionBegin; 152058667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 152158667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 15223a40ed3dSBarry Smith PetscFunctionReturn(0); 152358667388SSatish Balay } 15240ac07820SSatish Balay 15254a2ae208SSatish Balay #undef __FUNCT__ 15264a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1527dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 15280ac07820SSatish Balay { 15294e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 15304e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1531dfbe8321SBarry Smith PetscErrorCode ierr; 1532329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15330ac07820SSatish Balay 1534d64ed03dSBarry Smith PetscFunctionBegin; 1535d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 153626fbe8dcSKarl Rupp 15374e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 153826fbe8dcSKarl Rupp 15390e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1540de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 154126fbe8dcSKarl Rupp 15424e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 154326fbe8dcSKarl Rupp 15440e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1545de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 154626fbe8dcSKarl Rupp 15470ac07820SSatish Balay if (flag == MAT_LOCAL) { 15484e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15494e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15504e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15514e220ebcSLois Curfman McInnes info->memory = isend[3]; 15524e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15530ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1554ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 155526fbe8dcSKarl Rupp 15564e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15574e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15584e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15594e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15604e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15610ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1562ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 156326fbe8dcSKarl Rupp 15644e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15654e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15664e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15674e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15684e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1569ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15704e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15714e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15724e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15733a40ed3dSBarry Smith PetscFunctionReturn(0); 15740ac07820SSatish Balay } 15750ac07820SSatish Balay 15764a2ae208SSatish Balay #undef __FUNCT__ 15774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1578ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 157958667388SSatish Balay { 158058667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1581dfbe8321SBarry Smith PetscErrorCode ierr; 158258667388SSatish Balay 1583d64ed03dSBarry Smith PetscFunctionBegin; 158412c028f9SKris Buschelman switch (op) { 1585512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 158612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 158728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1588a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 158912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 15904e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15914e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 159212c028f9SKris Buschelman break; 159312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15944e0d8c25SBarry Smith a->roworiented = flg; 159526fbe8dcSKarl Rupp 15964e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15974e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 159812c028f9SKris Buschelman break; 15994e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1600290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 160112c028f9SKris Buschelman break; 160212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16034e0d8c25SBarry Smith a->donotstash = flg; 160412c028f9SKris Buschelman break; 160512c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 16064e0d8c25SBarry Smith a->ht_flag = flg; 160712c028f9SKris Buschelman break; 160877e54ba9SKris Buschelman case MAT_SYMMETRIC: 160977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16102188ac68SBarry Smith case MAT_HERMITIAN: 16112188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 16124e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 161377e54ba9SKris Buschelman break; 161412c028f9SKris Buschelman default: 1615ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1616d64ed03dSBarry Smith } 16173a40ed3dSBarry Smith PetscFunctionReturn(0); 161858667388SSatish Balay } 161958667388SSatish Balay 16204a2ae208SSatish Balay #undef __FUNCT__ 16216a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ" 1622fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 16230ac07820SSatish Balay { 16240ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16250ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16260ac07820SSatish Balay Mat B; 1627dfbe8321SBarry Smith PetscErrorCode ierr; 1628d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1629d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 16303eda8832SBarry Smith MatScalar *a; 16310ac07820SSatish Balay 1632d64ed03dSBarry Smith PetscFunctionBegin; 1633ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1634fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 1635ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1636d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 16377adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 16382e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 16390298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1640fc4dec0aSBarry Smith } else { 1641fc4dec0aSBarry Smith B = *matout; 1642fc4dec0aSBarry Smith } 16430ac07820SSatish Balay 16440ac07820SSatish Balay /* copy over the A part */ 16450ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16460ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1647785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 16480ac07820SSatish Balay 16490ac07820SSatish Balay for (i=0; i<mbs; i++) { 1650899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 165126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 16520ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1653899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16540ac07820SSatish Balay for (k=0; k<bs; k++) { 165597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 165626fbe8dcSKarl Rupp 16570ac07820SSatish Balay col++; a += bs; 16580ac07820SSatish Balay } 16590ac07820SSatish Balay } 16600ac07820SSatish Balay } 16610ac07820SSatish Balay /* copy over the B part */ 16620ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16630ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16640ac07820SSatish Balay for (i=0; i<mbs; i++) { 1665899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 166626fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 16670ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16680ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16690ac07820SSatish Balay for (k=0; k<bs; k++) { 167097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 167126fbe8dcSKarl Rupp col++; 167226fbe8dcSKarl Rupp a += bs; 16730ac07820SSatish Balay } 16740ac07820SSatish Balay } 16750ac07820SSatish Balay } 1676606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16770ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16780ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16790ac07820SSatish Balay 168026fbe8dcSKarl Rupp if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B; 168126fbe8dcSKarl Rupp else { 1682eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 16830ac07820SSatish Balay } 16843a40ed3dSBarry Smith PetscFunctionReturn(0); 16850ac07820SSatish Balay } 16860e95ebc0SSatish Balay 16874a2ae208SSatish Balay #undef __FUNCT__ 16884a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1689dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16900e95ebc0SSatish Balay { 169136c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 169236c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1693dfbe8321SBarry Smith PetscErrorCode ierr; 1694b24ad042SBarry Smith PetscInt s1,s2,s3; 16950e95ebc0SSatish Balay 1696d64ed03dSBarry Smith PetscFunctionBegin; 169736c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 169836c4a09eSSatish Balay if (rr) { 169936c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1700e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 170136c4a09eSSatish Balay /* Overlap communication with computation. */ 1702ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 170336c4a09eSSatish Balay } 17040e95ebc0SSatish Balay if (ll) { 17050e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1706e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 17070298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17080e95ebc0SSatish Balay } 170936c4a09eSSatish Balay /* scale the diagonal block */ 171036c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 171136c4a09eSSatish Balay 171236c4a09eSSatish Balay if (rr) { 171336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1714ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17150298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 171636c4a09eSSatish Balay } 17173a40ed3dSBarry Smith PetscFunctionReturn(0); 17180e95ebc0SSatish Balay } 17190e95ebc0SSatish Balay 17204a2ae208SSatish Balay #undef __FUNCT__ 17214a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 17222b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 17230ac07820SSatish Balay { 17240ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 172565a92638SMatthew G. Knepley PetscInt *owners = A->rmap->range; 172665a92638SMatthew G. Knepley PetscInt n = A->rmap->n; 172765a92638SMatthew G. Knepley PetscSF sf; 172865a92638SMatthew G. Knepley PetscInt *lrows; 172965a92638SMatthew G. Knepley PetscSFNode *rrows; 173069ea2d38SJed Brown PetscInt r, p = 0, len = 0; 17316849ba73SBarry Smith PetscErrorCode ierr; 17320ac07820SSatish Balay 1733d64ed03dSBarry Smith PetscFunctionBegin; 173465a92638SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 1735785e854fSJed Brown ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 173665a92638SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 1737a34163a4SJed Brown if (!A->nooffproczerorows) {ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);} 173865a92638SMatthew G. Knepley for (r = 0; r < N; ++r) { 173965a92638SMatthew G. Knepley const PetscInt idx = rows[r]; 174069ea2d38SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 174169ea2d38SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 174269ea2d38SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 174369ea2d38SJed Brown } 1744a34163a4SJed Brown if (A->nooffproczerorows) { 1745a34163a4SJed Brown if (p != l->rank) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"MAT_NO_OFF_PROC_ZERO_ROWS set, but row %D is not owned by rank %d",idx,l->rank); 1746a34163a4SJed Brown lrows[len++] = idx - owners[p]; 1747a34163a4SJed Brown } else { 174865a92638SMatthew G. Knepley rrows[r].rank = p; 174965a92638SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 17500ac07820SSatish Balay } 1751a34163a4SJed Brown } 1752a34163a4SJed Brown if (!A->nooffproczerorows) { 175365a92638SMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 175465a92638SMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 175565a92638SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 175665a92638SMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 175765a92638SMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 175865a92638SMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 175965a92638SMatthew G. Knepley /* Compress and put in row numbers */ 176065a92638SMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 1761a34163a4SJed Brown } 176297b48c8fSBarry Smith /* fix right hand side if needed */ 176397b48c8fSBarry Smith if (x && b) { 176465a92638SMatthew G. Knepley const PetscScalar *xx; 176565a92638SMatthew G. Knepley PetscScalar *bb; 176665a92638SMatthew G. Knepley 176797b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 176897b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 176965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 177097b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 177197b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 177297b48c8fSBarry Smith } 177397b48c8fSBarry Smith 17740ac07820SSatish Balay /* actually zap the local rows */ 177572dacd9aSBarry Smith /* 177672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1777a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 177872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 177972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 178072dacd9aSBarry Smith 178172dacd9aSBarry Smith */ 17829c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1783a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1784d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1785a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr); 1786f4df32b1SMatthew Knepley } else if (diag != 0.0) { 178765a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1788e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1789512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 179065a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 179165a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1792f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1793a07cd24cSSatish Balay } 1794a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1795a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17969c957beeSSatish Balay } else { 1797a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1798a07cd24cSSatish Balay } 1799606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 18004f9cfa9eSBarry Smith 18014f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 18024f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1803e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 180409e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1805e56f5c9eSBarry Smith } 18063a40ed3dSBarry Smith PetscFunctionReturn(0); 18070ac07820SSatish Balay } 180872dacd9aSBarry Smith 18094a2ae208SSatish Balay #undef __FUNCT__ 18106f0a72daSMatthew G. Knepley #define __FUNCT__ "MatZeroRowsColumns_MPIBAIJ" 18116f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 18126f0a72daSMatthew G. Knepley { 18136f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 18146f0a72daSMatthew G. Knepley PetscErrorCode ierr; 18155ba17502SJed Brown PetscMPIInt n = A->rmap->n; 1816fbb64d0eSMatthew G. Knepley PetscInt i,j,k,r,p = 0,len = 0,row,col,count; 18176f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 18186f0a72daSMatthew G. Knepley PetscSFNode *rrows; 18196f0a72daSMatthew G. Knepley PetscSF sf; 18206f0a72daSMatthew G. Knepley const PetscScalar *xx; 18216f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 18226f0a72daSMatthew G. Knepley Vec xmask,lmask; 18236f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 18246f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 18256f0a72daSMatthew G. Knepley PetscScalar *aa; 18266f0a72daSMatthew G. Knepley 18276f0a72daSMatthew G. Knepley PetscFunctionBegin; 18286f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 18296f0a72daSMatthew G. Knepley ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 18306f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 18316f0a72daSMatthew G. Knepley ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr); 18326f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 18336f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 18345ba17502SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 18355ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 18365ba17502SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 18375ba17502SJed Brown } 18386f0a72daSMatthew G. Knepley rrows[r].rank = p; 18396f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 18406f0a72daSMatthew G. Knepley } 18416f0a72daSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 18426f0a72daSMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 18436f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 18446f0a72daSMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 18456f0a72daSMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 18466f0a72daSMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 18476f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 18486f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 18496f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 18506f0a72daSMatthew G. Knepley ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr); 18516f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 18526f0a72daSMatthew G. Knepley ierr = MatGetVecs(A,&xmask,NULL);CHKERRQ(ierr); 18536f0a72daSMatthew G. Knepley ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr); 18546f0a72daSMatthew G. Knepley ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr); 18556f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 18566f0a72daSMatthew G. Knepley ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr); 18576f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18586f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18596f0a72daSMatthew G. Knepley ierr = VecDestroy(&xmask);CHKERRQ(ierr); 18606f0a72daSMatthew G. Knepley if (x) { 18616f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18626f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18636f0a72daSMatthew G. Knepley ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr); 18646f0a72daSMatthew G. Knepley ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 18656f0a72daSMatthew G. Knepley } 18666f0a72daSMatthew G. Knepley ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr); 18676f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 18686f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 18696f0a72daSMatthew G. Knepley row = lrows[i]; 18706f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 18716f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 18726f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 18736f0a72daSMatthew G. Knepley aa[0] = 0.0; 18746f0a72daSMatthew G. Knepley aa += bs; 18756f0a72daSMatthew G. Knepley } 18766f0a72daSMatthew G. Knepley } 18776f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 18786f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 18796f0a72daSMatthew G. Knepley row = i/bs; 18806f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 18816f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 18826f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 18836f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 18846f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 18856f0a72daSMatthew G. Knepley if (b) bb[i] -= aa[0]*xx[col]; 18866f0a72daSMatthew G. Knepley aa[0] = 0.0; 18876f0a72daSMatthew G. Knepley } 18886f0a72daSMatthew G. Knepley } 18896f0a72daSMatthew G. Knepley } 18906f0a72daSMatthew G. Knepley } 18916f0a72daSMatthew G. Knepley if (x) { 18926f0a72daSMatthew G. Knepley ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 18936f0a72daSMatthew G. Knepley ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr); 18946f0a72daSMatthew G. Knepley } 18956f0a72daSMatthew G. Knepley ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr); 18966f0a72daSMatthew G. Knepley ierr = VecDestroy(&lmask);CHKERRQ(ierr); 18976f0a72daSMatthew G. Knepley ierr = PetscFree(lrows);CHKERRQ(ierr); 18984f9cfa9eSBarry Smith 18994f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 19004f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 19014f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 19024f9cfa9eSBarry Smith ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 19034f9cfa9eSBarry Smith } 19046f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 19056f0a72daSMatthew G. Knepley } 19066f0a72daSMatthew G. Knepley 19076f0a72daSMatthew G. Knepley #undef __FUNCT__ 19084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1909dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1910bb5a7306SBarry Smith { 1911bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1912dfbe8321SBarry Smith PetscErrorCode ierr; 1913d64ed03dSBarry Smith 1914d64ed03dSBarry Smith PetscFunctionBegin; 1915bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 19163a40ed3dSBarry Smith PetscFunctionReturn(0); 1917bb5a7306SBarry Smith } 1918bb5a7306SBarry Smith 19196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 19200ac07820SSatish Balay 19214a2ae208SSatish Balay #undef __FUNCT__ 19224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1923ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 19247fc3c18eSBarry Smith { 19257fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 19267fc3c18eSBarry Smith Mat a,b,c,d; 1927ace3abfcSBarry Smith PetscBool flg; 1928dfbe8321SBarry Smith PetscErrorCode ierr; 19297fc3c18eSBarry Smith 19307fc3c18eSBarry Smith PetscFunctionBegin; 19317fc3c18eSBarry Smith a = matA->A; b = matA->B; 19327fc3c18eSBarry Smith c = matB->A; d = matB->B; 19337fc3c18eSBarry Smith 19347fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1935abc0a331SBarry Smith if (flg) { 19367fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 19377fc3c18eSBarry Smith } 1938ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 19397fc3c18eSBarry Smith PetscFunctionReturn(0); 19407fc3c18eSBarry Smith } 19417fc3c18eSBarry Smith 19423c896bc6SHong Zhang #undef __FUNCT__ 19433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 19443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 19453c896bc6SHong Zhang { 19463c896bc6SHong Zhang PetscErrorCode ierr; 19473c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 19483c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 19493c896bc6SHong Zhang 19503c896bc6SHong Zhang PetscFunctionBegin; 19513c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 19523c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 19533c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 19543c896bc6SHong Zhang } else { 19553c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 19563c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 19573c896bc6SHong Zhang } 19583c896bc6SHong Zhang PetscFunctionReturn(0); 19593c896bc6SHong Zhang } 1960273d9f13SBarry Smith 19614a2ae208SSatish Balay #undef __FUNCT__ 19624994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ" 19634994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1964273d9f13SBarry Smith { 1965dfbe8321SBarry Smith PetscErrorCode ierr; 1966273d9f13SBarry Smith 1967273d9f13SBarry Smith PetscFunctionBegin; 1968535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1969273d9f13SBarry Smith PetscFunctionReturn(0); 1970273d9f13SBarry Smith } 1971273d9f13SBarry Smith 19724fe895cdSHong Zhang #undef __FUNCT__ 19734de5dceeSHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_MPIBAIJ" 19744de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 19754de5dceeSHong Zhang { 1976001ddc4fSHong Zhang PetscErrorCode ierr; 1977001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 19784de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 19794de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 19804de5dceeSHong Zhang 19814de5dceeSHong Zhang PetscFunctionBegin; 1982001ddc4fSHong Zhang ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr); 19834de5dceeSHong Zhang PetscFunctionReturn(0); 19844de5dceeSHong Zhang } 19854de5dceeSHong Zhang 19864de5dceeSHong Zhang #undef __FUNCT__ 19874fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 19884fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19894fe895cdSHong Zhang { 19904fe895cdSHong Zhang PetscErrorCode ierr; 19914fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 19924fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19934fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 19944fe895cdSHong Zhang 19954fe895cdSHong Zhang PetscFunctionBegin; 19964fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19974fe895cdSHong Zhang PetscScalar alpha = a; 19984fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 19994fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 2000c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 20018b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 20024fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 20034fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 2004c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 20058b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 2006a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 20074fe895cdSHong Zhang } else { 20084de5dceeSHong Zhang Mat B; 20094de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 20104de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 20114de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 20124de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 20134de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 20144de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 20154de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 20164de5dceeSHong Zhang ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr); 20174de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 20184de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 20194de5dceeSHong Zhang ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 20204de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 20214de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 20224de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 20234de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 20244de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 20254fe895cdSHong Zhang } 20264fe895cdSHong Zhang PetscFunctionReturn(0); 20274fe895cdSHong Zhang } 20284fe895cdSHong Zhang 202999cafbc1SBarry Smith #undef __FUNCT__ 203099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 203199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 203299cafbc1SBarry Smith { 203399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 203499cafbc1SBarry Smith PetscErrorCode ierr; 203599cafbc1SBarry Smith 203699cafbc1SBarry Smith PetscFunctionBegin; 203799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 203899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 203999cafbc1SBarry Smith PetscFunctionReturn(0); 204099cafbc1SBarry Smith } 204199cafbc1SBarry Smith 204299cafbc1SBarry Smith #undef __FUNCT__ 204399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 204499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 204599cafbc1SBarry Smith { 204699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 204799cafbc1SBarry Smith PetscErrorCode ierr; 204899cafbc1SBarry Smith 204999cafbc1SBarry Smith PetscFunctionBegin; 205099cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 205199cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 205299cafbc1SBarry Smith PetscFunctionReturn(0); 205399cafbc1SBarry Smith } 205499cafbc1SBarry Smith 205582094794SBarry Smith #undef __FUNCT__ 205682094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 20574aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 20584aa3045dSJed Brown { 20594aa3045dSJed Brown PetscErrorCode ierr; 20604aa3045dSJed Brown IS iscol_local; 20614aa3045dSJed Brown PetscInt csize; 20624aa3045dSJed Brown 20634aa3045dSJed Brown PetscFunctionBegin; 20644aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 2065b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 2066b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 2067e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 2068b79d0421SJed Brown } else { 20694aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 2070b79d0421SJed Brown } 20714aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 2072b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 2073b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 20746bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 2075b79d0421SJed Brown } 20764aa3045dSJed Brown PetscFunctionReturn(0); 20774aa3045dSJed Brown } 207829dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*); 20794aa3045dSJed Brown #undef __FUNCT__ 2080dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private" 208182094794SBarry Smith /* 208282094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 208382094794SBarry Smith in local and then by concatenating the local matrices the end result. 208482094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 208582094794SBarry Smith */ 20864aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 208782094794SBarry Smith { 208882094794SBarry Smith PetscErrorCode ierr; 208982094794SBarry Smith PetscMPIInt rank,size; 209082094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 209129dcf524SDmitry Karpeev PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow; 209229dcf524SDmitry Karpeev Mat M,Mreuse; 209382094794SBarry Smith MatScalar *vwork,*aa; 2094ce94432eSBarry Smith MPI_Comm comm; 209529dcf524SDmitry Karpeev IS isrow_new, iscol_new; 209629dcf524SDmitry Karpeev PetscBool idflag,allrows, allcols; 209782094794SBarry Smith Mat_SeqBAIJ *aij; 209882094794SBarry Smith 209982094794SBarry Smith PetscFunctionBegin; 2100ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 210182094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 210282094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 210329dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 210429dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 210529dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 210629dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 210782094794SBarry Smith 210829dcf524SDmitry Karpeev /* Check for special case: each processor gets entire matrix columns */ 210929dcf524SDmitry Karpeev ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr); 211029dcf524SDmitry Karpeev ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr); 211126fbe8dcSKarl Rupp if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE; 211226fbe8dcSKarl Rupp else allcols = PETSC_FALSE; 211329dcf524SDmitry Karpeev 211429dcf524SDmitry Karpeev ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr); 211529dcf524SDmitry Karpeev ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr); 211626fbe8dcSKarl Rupp if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE; 211726fbe8dcSKarl Rupp else allrows = PETSC_FALSE; 211826fbe8dcSKarl Rupp 211982094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 212082094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 2121e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 212275f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 212382094794SBarry Smith } else { 212475f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 212582094794SBarry Smith } 212629dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 212729dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 212882094794SBarry Smith /* 212982094794SBarry Smith m - number of local rows 213082094794SBarry Smith n - number of columns (same on all processors) 213182094794SBarry Smith rstart - first row in new global matrix generated 213282094794SBarry Smith */ 213382094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 213482094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 213582094794SBarry Smith m = m/bs; 213682094794SBarry Smith n = n/bs; 213782094794SBarry Smith 213882094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 213982094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 214082094794SBarry Smith ii = aij->i; 214182094794SBarry Smith jj = aij->j; 214282094794SBarry Smith 214382094794SBarry Smith /* 214482094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 214582094794SBarry Smith portions of the matrix in order to do correct preallocation 214682094794SBarry Smith */ 214782094794SBarry Smith 214882094794SBarry Smith /* first get start and end of "diagonal" columns */ 214982094794SBarry Smith if (csize == PETSC_DECIDE) { 215082094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 215182094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 215282094794SBarry Smith nlocal = m; 215382094794SBarry Smith } else { 215482094794SBarry Smith nlocal = n/size + ((n % size) > rank); 215582094794SBarry Smith } 215682094794SBarry Smith } else { 215782094794SBarry Smith nlocal = csize/bs; 215882094794SBarry Smith } 215982094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 216082094794SBarry Smith rstart = rend - nlocal; 216165e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 216282094794SBarry Smith 216382094794SBarry Smith /* next, compute all the lengths */ 2164dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 216582094794SBarry Smith for (i=0; i<m; i++) { 216682094794SBarry Smith jend = ii[i+1] - ii[i]; 216782094794SBarry Smith olen = 0; 216882094794SBarry Smith dlen = 0; 216982094794SBarry Smith for (j=0; j<jend; j++) { 217082094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 217182094794SBarry Smith else dlen++; 217282094794SBarry Smith jj++; 217382094794SBarry Smith } 217482094794SBarry Smith olens[i] = olen; 217582094794SBarry Smith dlens[i] = dlen; 217682094794SBarry Smith } 217782094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 217882094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 217982094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 218082094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2181eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 218282094794SBarry Smith } else { 218382094794SBarry Smith PetscInt ml,nl; 218482094794SBarry Smith 218582094794SBarry Smith M = *newmat; 218682094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2187e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 218882094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 218982094794SBarry Smith /* 219082094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 219182094794SBarry Smith rather than the slower MatSetValues(). 219282094794SBarry Smith */ 219382094794SBarry Smith M->was_assembled = PETSC_TRUE; 219482094794SBarry Smith M->assembled = PETSC_FALSE; 219582094794SBarry Smith } 219682094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 219782094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 219882094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 219982094794SBarry Smith ii = aij->i; 220082094794SBarry Smith jj = aij->j; 220182094794SBarry Smith aa = aij->a; 220282094794SBarry Smith for (i=0; i<m; i++) { 220382094794SBarry Smith row = rstart/bs + i; 220482094794SBarry Smith nz = ii[i+1] - ii[i]; 220582094794SBarry Smith cwork = jj; jj += nz; 220675f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 220782094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 220882094794SBarry Smith } 220982094794SBarry Smith 221082094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 221182094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 221282094794SBarry Smith *newmat = M; 221382094794SBarry Smith 221482094794SBarry Smith /* save submatrix used in processor for next request */ 221582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 221682094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 221782094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 221882094794SBarry Smith } 221982094794SBarry Smith PetscFunctionReturn(0); 222082094794SBarry Smith } 222182094794SBarry Smith 222282094794SBarry Smith #undef __FUNCT__ 222382094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 222482094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 222582094794SBarry Smith { 222682094794SBarry Smith MPI_Comm comm,pcomm; 2227a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 222882094794SBarry Smith const PetscInt *rows; 2229dbf0e21dSBarry Smith PetscMPIInt size; 2230a0a83eb5SRémi Lacroix IS crowp,lcolp; 223182094794SBarry Smith PetscErrorCode ierr; 223282094794SBarry Smith 223382094794SBarry Smith PetscFunctionBegin; 223482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 223582094794SBarry Smith /* make a collective version of 'rowp' */ 223682094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 223782094794SBarry Smith if (pcomm==comm) { 223882094794SBarry Smith crowp = rowp; 223982094794SBarry Smith } else { 224082094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 224182094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 224270b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 224382094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 224482094794SBarry Smith } 2245a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2246a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 224782094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2248dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2249dbf0e21dSBarry Smith if (size==1) { 225082094794SBarry Smith lcolp = colp; 225182094794SBarry Smith } else { 225275f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 225382094794SBarry Smith } 2254dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 225575f6568bSJed Brown /* now we just get the submatrix */ 22567afc1a8bSJed Brown ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr); 2257a0a83eb5SRémi Lacroix ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2258a0a83eb5SRémi Lacroix /* clean up */ 2259a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2260a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2261a0a83eb5SRémi Lacroix } 2262dbf0e21dSBarry Smith if (size>1) { 22636bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 226482094794SBarry Smith } 226582094794SBarry Smith PetscFunctionReturn(0); 226682094794SBarry Smith } 226782094794SBarry Smith 22688c7482ecSBarry Smith #undef __FUNCT__ 22698c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 22707087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 22718c7482ecSBarry Smith { 22728c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 22738c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 22748c7482ecSBarry Smith 22758c7482ecSBarry Smith PetscFunctionBegin; 227626fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 227726fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 22788c7482ecSBarry Smith PetscFunctionReturn(0); 22798c7482ecSBarry Smith } 22808c7482ecSBarry Smith 2281f6d58c54SBarry Smith #undef __FUNCT__ 2282d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ" 2283d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2284f6d58c54SBarry Smith { 2285f6d58c54SBarry Smith Mat B; 2286f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2287f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2288f6d58c54SBarry Smith Mat_SeqAIJ *b; 2289f6d58c54SBarry Smith PetscErrorCode ierr; 2290f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2291f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2292f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2293f6d58c54SBarry Smith 2294f6d58c54SBarry Smith PetscFunctionBegin; 2295ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2296ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2297f6d58c54SBarry Smith 2298f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2299f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2300f6d58c54SBarry Smith */ 2301785e854fSJed Brown ierr = PetscMalloc1((A->rmap->N/bs),&lens);CHKERRQ(ierr); 2302f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2303f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2304f6d58c54SBarry Smith } 2305f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2306785e854fSJed Brown ierr = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr); 2307f6d58c54SBarry Smith displs = recvcounts + size; 2308f6d58c54SBarry Smith for (i=0; i<size; i++) { 2309f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2310f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2311f6d58c54SBarry Smith } 2312f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2313ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2314f6d58c54SBarry Smith #else 2315ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2316f6d58c54SBarry Smith #endif 2317f6d58c54SBarry Smith /* --------------------------------------------------------------- 2318f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2319f6d58c54SBarry Smith */ 2320f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2321f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2322f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2323f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2324f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2325f6d58c54SBarry Smith 2326f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2327f6d58c54SBarry Smith Copy my part of matrix column indices over 2328f6d58c54SBarry Smith */ 2329f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2330f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2331f6d58c54SBarry Smith a_jsendbuf = ad->j; 2332f6d58c54SBarry Smith b_jsendbuf = bd->j; 2333f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2334f6d58c54SBarry Smith cnt = 0; 2335f6d58c54SBarry Smith for (i=0; i<n; i++) { 2336f6d58c54SBarry Smith 2337f6d58c54SBarry Smith /* put in lower diagonal portion */ 2338f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2339f6d58c54SBarry Smith while (m > 0) { 2340f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2341f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2342f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2343f6d58c54SBarry Smith m--; 2344f6d58c54SBarry Smith } 2345f6d58c54SBarry Smith 2346f6d58c54SBarry Smith /* put in diagonal portion */ 2347f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2348f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2349f6d58c54SBarry Smith } 2350f6d58c54SBarry Smith 2351f6d58c54SBarry Smith /* put in upper diagonal portion */ 2352f6d58c54SBarry Smith while (m-- > 0) { 2353f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2354f6d58c54SBarry Smith } 2355f6d58c54SBarry Smith } 2356e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2357f6d58c54SBarry Smith 2358f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2359f6d58c54SBarry Smith Gather all column indices to all processors 2360f6d58c54SBarry Smith */ 2361f6d58c54SBarry Smith for (i=0; i<size; i++) { 2362f6d58c54SBarry Smith recvcounts[i] = 0; 2363f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2364f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2365f6d58c54SBarry Smith } 2366f6d58c54SBarry Smith } 2367f6d58c54SBarry Smith displs[0] = 0; 2368f6d58c54SBarry Smith for (i=1; i<size; i++) { 2369f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2370f6d58c54SBarry Smith } 2371f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2372ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2373f6d58c54SBarry Smith #else 2374ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2375f6d58c54SBarry Smith #endif 2376f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2377f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2378f6d58c54SBarry Smith */ 2379f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2380f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2381f6d58c54SBarry Smith /* set the b->i indices */ 2382f6d58c54SBarry Smith b->i[0] = 0; 2383f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2384f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2385f6d58c54SBarry Smith } 2386f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2387f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2388f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2389f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2390f6d58c54SBarry Smith 2391f6d58c54SBarry Smith if (A->symmetric) { 2392f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2393f6d58c54SBarry Smith } else if (A->hermitian) { 2394f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2395f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2396f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2397f6d58c54SBarry Smith } 2398f6d58c54SBarry Smith *newmat = B; 2399f6d58c54SBarry Smith PetscFunctionReturn(0); 2400f6d58c54SBarry Smith } 2401f6d58c54SBarry Smith 2402b1a666ecSBarry Smith #undef __FUNCT__ 2403b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2404b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2405b1a666ecSBarry Smith { 2406b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2407b1a666ecSBarry Smith PetscErrorCode ierr; 2408b1a666ecSBarry Smith Vec bb1 = 0; 2409b1a666ecSBarry Smith 2410b1a666ecSBarry Smith PetscFunctionBegin; 2411b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2412b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2413b1a666ecSBarry Smith PetscFunctionReturn(0); 2414b1a666ecSBarry Smith } 2415b1a666ecSBarry Smith 24164e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 24174e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24184e980039SJed Brown } 24194e980039SJed Brown 2420b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2421b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2422b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2423b1a666ecSBarry Smith its--; 2424b1a666ecSBarry Smith } 2425b1a666ecSBarry Smith 2426b1a666ecSBarry Smith while (its--) { 2427b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2428b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2429b1a666ecSBarry Smith 2430b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2431b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2432b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2433b1a666ecSBarry Smith 2434b1a666ecSBarry Smith /* local sweep */ 2435b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2436b1a666ecSBarry Smith } 2437b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2438b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2439b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2440b1a666ecSBarry Smith its--; 2441b1a666ecSBarry Smith } 2442b1a666ecSBarry Smith while (its--) { 2443b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2444b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2445b1a666ecSBarry Smith 2446b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2447b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2448b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2449b1a666ecSBarry Smith 2450b1a666ecSBarry Smith /* local sweep */ 2451b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2452b1a666ecSBarry Smith } 2453b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2454b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2455b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2456b1a666ecSBarry Smith its--; 2457b1a666ecSBarry Smith } 2458b1a666ecSBarry Smith while (its--) { 2459b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2460b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2461b1a666ecSBarry Smith 2462b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2463b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2464b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2465b1a666ecSBarry Smith 2466b1a666ecSBarry Smith /* local sweep */ 2467b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2468b1a666ecSBarry Smith } 2469ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2470b1a666ecSBarry Smith 24716bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2472b1a666ecSBarry Smith PetscFunctionReturn(0); 2473b1a666ecSBarry Smith } 2474b1a666ecSBarry Smith 2475bbead8a2SBarry Smith #undef __FUNCT__ 247647f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ" 247747f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 247847f7623dSRémi Lacroix { 247947f7623dSRémi Lacroix PetscErrorCode ierr; 248047f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 248147f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 248247f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 248347f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 248447f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 248547f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 248647f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 248747f7623dSRémi Lacroix PetscReal *work; 248847f7623dSRémi Lacroix 248947f7623dSRémi Lacroix PetscFunctionBegin; 249047f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 24911795a4d1SJed Brown ierr = PetscCalloc1(N,&work);CHKERRQ(ierr); 249247f7623dSRémi Lacroix if (type == NORM_2) { 249347f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 249447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 249547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 249647f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 249747f7623dSRémi Lacroix a_val++; 249847f7623dSRémi Lacroix } 249947f7623dSRémi Lacroix } 250047f7623dSRémi Lacroix } 250147f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 250247f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 250347f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 250447f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 250547f7623dSRémi Lacroix b_val++; 250647f7623dSRémi Lacroix } 250747f7623dSRémi Lacroix } 250847f7623dSRémi Lacroix } 250947f7623dSRémi Lacroix } else if (type == NORM_1) { 251047f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 251147f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 251247f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 251347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 251447f7623dSRémi Lacroix a_val++; 251547f7623dSRémi Lacroix } 251647f7623dSRémi Lacroix } 251747f7623dSRémi Lacroix } 251847f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 251947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 252047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 252147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 252247f7623dSRémi Lacroix b_val++; 252347f7623dSRémi Lacroix } 252447f7623dSRémi Lacroix } 252547f7623dSRémi Lacroix } 252647f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 252747f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 252847f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 252947f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 253047f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 253147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 253247f7623dSRémi Lacroix a_val++; 253347f7623dSRémi Lacroix } 253447f7623dSRémi Lacroix } 253547f7623dSRémi Lacroix } 253647f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 253747f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 253847f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 253947f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 254047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 254147f7623dSRémi Lacroix b_val++; 254247f7623dSRémi Lacroix } 254347f7623dSRémi Lacroix } 254447f7623dSRémi Lacroix } 254547f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 254647f7623dSRémi Lacroix if (type == NORM_INFINITY) { 254747f7623dSRémi Lacroix ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 254847f7623dSRémi Lacroix } else { 254947f7623dSRémi Lacroix ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 255047f7623dSRémi Lacroix } 255147f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 255247f7623dSRémi Lacroix if (type == NORM_2) { 255347f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 255447f7623dSRémi Lacroix } 255547f7623dSRémi Lacroix PetscFunctionReturn(0); 255647f7623dSRémi Lacroix } 255747f7623dSRémi Lacroix 255847f7623dSRémi Lacroix #undef __FUNCT__ 2559bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ" 2560713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2561bbead8a2SBarry Smith { 2562bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2563bbead8a2SBarry Smith PetscErrorCode ierr; 2564bbead8a2SBarry Smith 2565bbead8a2SBarry Smith PetscFunctionBegin; 2566bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 2567bbead8a2SBarry Smith PetscFunctionReturn(0); 2568bbead8a2SBarry Smith } 2569bbead8a2SBarry Smith 25708c7482ecSBarry Smith 257179bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 25723964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2573cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2574cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2575cc2dc46cSBarry Smith MatMult_MPIBAIJ, 257697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25777c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25787c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2579cc2dc46cSBarry Smith 0, 2580cc2dc46cSBarry Smith 0, 2581cc2dc46cSBarry Smith 0, 258297304618SKris Buschelman /*10*/ 0, 2583cc2dc46cSBarry Smith 0, 2584cc2dc46cSBarry Smith 0, 2585b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2586cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 258797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25887fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2589cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2590cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2591cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 259297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2593cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2594cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2595cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2596d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith 0, 2599cc2dc46cSBarry Smith 0, 2600cc2dc46cSBarry Smith 0, 26014994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2602273d9f13SBarry Smith 0, 2603cc2dc46cSBarry Smith 0, 2604cc2dc46cSBarry Smith 0, 2605cc2dc46cSBarry Smith 0, 2606d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2607cc2dc46cSBarry Smith 0, 2608cc2dc46cSBarry Smith 0, 2609cc2dc46cSBarry Smith 0, 2610cc2dc46cSBarry Smith 0, 2611d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2612cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2613cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2614cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 26153c896bc6SHong Zhang MatCopy_MPIBAIJ, 2616d519adbfSMatthew Knepley /*44*/ 0, 2617cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2618cc2dc46cSBarry Smith 0, 2619cc2dc46cSBarry Smith 0, 26206f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2621f73d5cc4SBarry Smith /*49*/ 0, 2622cc2dc46cSBarry Smith 0, 2623cc2dc46cSBarry Smith 0, 2624cc2dc46cSBarry Smith 0, 2625cc2dc46cSBarry Smith 0, 262693dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2627cc2dc46cSBarry Smith 0, 2628cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 262982094794SBarry Smith MatPermute_MPIBAIJ, 2630cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2631d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2632f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2633f14a1c24SBarry Smith MatView_MPIBAIJ, 2634357abbc8SBarry Smith 0, 26357843d17aSBarry Smith 0, 2636d519adbfSMatthew Knepley /*64*/ 0, 26377843d17aSBarry Smith 0, 26387843d17aSBarry Smith 0, 26397843d17aSBarry Smith 0, 26407843d17aSBarry Smith 0, 2641d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26427843d17aSBarry Smith 0, 264397304618SKris Buschelman 0, 264497304618SKris Buschelman 0, 264597304618SKris Buschelman 0, 2646d519adbfSMatthew Knepley /*74*/ 0, 2647f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 264897304618SKris Buschelman 0, 264997304618SKris Buschelman 0, 265097304618SKris Buschelman 0, 2651d519adbfSMatthew Knepley /*79*/ 0, 265297304618SKris Buschelman 0, 265397304618SKris Buschelman 0, 265497304618SKris Buschelman 0, 26555bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2656d519adbfSMatthew Knepley /*84*/ 0, 2657865e5f61SKris Buschelman 0, 2658865e5f61SKris Buschelman 0, 2659865e5f61SKris Buschelman 0, 2660865e5f61SKris Buschelman 0, 2661d519adbfSMatthew Knepley /*89*/ 0, 2662865e5f61SKris Buschelman 0, 2663865e5f61SKris Buschelman 0, 2664865e5f61SKris Buschelman 0, 2665865e5f61SKris Buschelman 0, 2666d519adbfSMatthew Knepley /*94*/ 0, 2667865e5f61SKris Buschelman 0, 2668865e5f61SKris Buschelman 0, 266999cafbc1SBarry Smith 0, 267099cafbc1SBarry Smith 0, 2671d519adbfSMatthew Knepley /*99*/ 0, 267299cafbc1SBarry Smith 0, 267399cafbc1SBarry Smith 0, 267499cafbc1SBarry Smith 0, 267599cafbc1SBarry Smith 0, 2676d519adbfSMatthew Knepley /*104*/0, 267799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26788c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26798c7482ecSBarry Smith 0, 26808c7482ecSBarry Smith 0, 2681d519adbfSMatthew Knepley /*109*/0, 26828c7482ecSBarry Smith 0, 26838c7482ecSBarry Smith 0, 26848c7482ecSBarry Smith 0, 26858c7482ecSBarry Smith 0, 2686d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 26878c7482ecSBarry Smith 0, 26884683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 26894683f7a4SShri Abhyankar 0, 26904683f7a4SShri Abhyankar 0, 26914683f7a4SShri Abhyankar /*119*/0, 26924683f7a4SShri Abhyankar 0, 26934683f7a4SShri Abhyankar 0, 2694bbead8a2SBarry Smith 0, 2695e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2696bbead8a2SBarry Smith /*124*/0, 269747f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 26983964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 26993964eb88SJed Brown 0, 27003964eb88SJed Brown 0, 27013964eb88SJed Brown /*129*/ 0, 27023964eb88SJed Brown 0, 27033964eb88SJed Brown 0, 27043964eb88SJed Brown 0, 27053964eb88SJed Brown 0, 27063964eb88SJed Brown /*134*/ 0, 27073964eb88SJed Brown 0, 27083964eb88SJed Brown 0, 27093964eb88SJed Brown 0, 27103964eb88SJed Brown 0, 27113964eb88SJed Brown /*139*/ 0, 2712f9426fe0SMark Adams 0, 27131919a2e2SJed Brown 0, 2714f86b9fbaSHong Zhang MatFDColoringSetUp_MPIXAIJ 27158c7482ecSBarry Smith }; 271679bdfe76SSatish Balay 27174a2ae208SSatish Balay #undef __FUNCT__ 27184a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 271911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 27205ef9f2a5SBarry Smith { 27215ef9f2a5SBarry Smith PetscFunctionBegin; 27225ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 27235ef9f2a5SBarry Smith PetscFunctionReturn(0); 27245ef9f2a5SBarry Smith } 272579bdfe76SSatish Balay 27268cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2727d94109b8SHong Zhang 2728aac34f13SBarry Smith #undef __FUNCT__ 2729aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2730cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2731aac34f13SBarry Smith { 2732b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2733b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2734b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2735b8d659d7SLisandro Dalcin PetscScalar *values=0; 2736d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2737aac34f13SBarry Smith PetscErrorCode ierr; 2738aac34f13SBarry Smith 2739aac34f13SBarry Smith PetscFunctionBegin; 274026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 274126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 274226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 274326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2744e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2745d0f46423SBarry Smith m = B->rmap->n/bs; 2746d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2747d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2748d0f46423SBarry Smith cend = B->cmap->rend/bs; 2749b8d659d7SLisandro Dalcin 2750e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2751dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2752aac34f13SBarry Smith for (i=0; i<m; i++) { 2753cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2754e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2755b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2756cf12db73SBarry Smith JJ = jj + ii[i]; 2757b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2758aac34f13SBarry Smith if (*JJ >= cstart) break; 2759aac34f13SBarry Smith JJ++; 2760aac34f13SBarry Smith } 2761aac34f13SBarry Smith d = 0; 2762b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2763aac34f13SBarry Smith if (*JJ++ >= cend) break; 2764aac34f13SBarry Smith d++; 2765aac34f13SBarry Smith } 2766aac34f13SBarry Smith d_nnz[i] = d; 2767b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2768aac34f13SBarry Smith } 2769aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2770fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2771aac34f13SBarry Smith 2772b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2773b8d659d7SLisandro Dalcin if (!values) { 2774785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2775b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2776b8d659d7SLisandro Dalcin } 2777b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2778b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2779cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2780cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 27813adadaf3SJed Brown if (!roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2782cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2783b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 27843adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 27853adadaf3SJed Brown PetscInt j; 27863adadaf3SJed Brown for (j=0; j<ncols; j++) { 27873adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 27883adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 27893adadaf3SJed Brown } 27903adadaf3SJed Brown } 2791aac34f13SBarry Smith } 2792aac34f13SBarry Smith 2793b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2794aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2795aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 27967827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2797aac34f13SBarry Smith PetscFunctionReturn(0); 2798aac34f13SBarry Smith } 2799aac34f13SBarry Smith 2800aac34f13SBarry Smith #undef __FUNCT__ 2801aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2802aac34f13SBarry Smith /*@C 2803dfb205c3SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2804aac34f13SBarry Smith (the default parallel PETSc format). 2805aac34f13SBarry Smith 2806aac34f13SBarry Smith Collective on MPI_Comm 2807aac34f13SBarry Smith 2808aac34f13SBarry Smith Input Parameters: 28091c4f3114SJed Brown + B - the matrix 2810dfb205c3SBarry Smith . bs - the block size 2811aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2812aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2813aac34f13SBarry Smith - v - optional values in the matrix 2814aac34f13SBarry Smith 2815aac34f13SBarry Smith Level: developer 2816aac34f13SBarry Smith 28173adadaf3SJed Brown Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 28183adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 28193adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 28203adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 28213adadaf3SJed Brown block column and the second index is over columns within a block. 28223adadaf3SJed Brown 2823aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2824aac34f13SBarry Smith 28253adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2826aac34f13SBarry Smith @*/ 28277087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2828aac34f13SBarry Smith { 28294ac538c5SBarry Smith PetscErrorCode ierr; 2830aac34f13SBarry Smith 2831aac34f13SBarry Smith PetscFunctionBegin; 28326ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 28336ba663aaSJed Brown PetscValidType(B,1); 28346ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 28354ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2836aac34f13SBarry Smith PetscFunctionReturn(0); 2837aac34f13SBarry Smith } 2838aac34f13SBarry Smith 28394a2ae208SSatish Balay #undef __FUNCT__ 2840a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2841b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2842a23d5eceSKris Buschelman { 2843a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2844dfbe8321SBarry Smith PetscErrorCode ierr; 2845535b19f3SBarry Smith PetscInt i; 2846a23d5eceSKris Buschelman 2847a23d5eceSKris Buschelman PetscFunctionBegin; 284833d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 284926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 285026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2851e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2852899cda47SBarry Smith 2853a23d5eceSKris Buschelman if (d_nnz) { 2854d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2855e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2856a23d5eceSKris Buschelman } 2857a23d5eceSKris Buschelman } 2858a23d5eceSKris Buschelman if (o_nnz) { 2859d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2860e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2861a23d5eceSKris Buschelman } 2862a23d5eceSKris Buschelman } 2863a23d5eceSKris Buschelman 2864a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2865a23d5eceSKris Buschelman b->bs2 = bs*bs; 2866d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2867d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2868d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2869d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2870a23d5eceSKris Buschelman 2871a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2872d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2873a23d5eceSKris Buschelman } 2874d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2875d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2876d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2877d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2878a23d5eceSKris Buschelman 2879526dfc15SBarry Smith if (!B->preallocated) { 2880f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2881d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28829c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 28833bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2884f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2885d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28869c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 28873bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2888ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2889526dfc15SBarry Smith } 2890a23d5eceSKris Buschelman 2891526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2892526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2893526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2894a23d5eceSKris Buschelman PetscFunctionReturn(0); 2895a23d5eceSKris Buschelman } 2896a23d5eceSKris Buschelman 28977087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 28987087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 28995bf65638SKris Buschelman 290082094794SBarry Smith #undef __FUNCT__ 290182094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 29028cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 290382094794SBarry Smith { 290482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 290582094794SBarry Smith PetscErrorCode ierr; 290682094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 290782094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 290882094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 290982094794SBarry Smith 291082094794SBarry Smith PetscFunctionBegin; 2911785e854fSJed Brown ierr = PetscMalloc1((M+1),&ii);CHKERRQ(ierr); 291282094794SBarry Smith ii[0] = 0; 291382094794SBarry Smith for (i=0; i<M; i++) { 2914e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2915e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 291682094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 29175ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 29185ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 29195ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 29205ee9ba1cSJed Brown } 292182094794SBarry Smith } 2922785e854fSJed Brown ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr); 292382094794SBarry Smith cnt = 0; 292482094794SBarry Smith for (i=0; i<M; i++) { 292582094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 292682094794SBarry Smith if (garray[jo[j]] > rstart) break; 292782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 292882094794SBarry Smith } 292982094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 29305ee9ba1cSJed Brown if (jd[k] != i) { 293182094794SBarry Smith jj[cnt++] = rstart + jd[k]; 293282094794SBarry Smith } 29335ee9ba1cSJed Brown } 293482094794SBarry Smith for (; j<io[i+1]; j++) { 293582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 293682094794SBarry Smith } 293782094794SBarry Smith } 2938ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 293982094794SBarry Smith PetscFunctionReturn(0); 294082094794SBarry Smith } 294182094794SBarry Smith 2942c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 294362471d69SBarry Smith 29448cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2945b2573a8aSBarry Smith 294662471d69SBarry Smith #undef __FUNCT__ 294762471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ" 29488cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 294962471d69SBarry Smith { 295062471d69SBarry Smith PetscErrorCode ierr; 295162471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 295262471d69SBarry Smith Mat B; 295385a69837SSatish Balay Mat_MPIAIJ *b; 295462471d69SBarry Smith 295562471d69SBarry Smith PetscFunctionBegin; 2956ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 295762471d69SBarry Smith 2958ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 29596d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 2960*f090d951SRémi Lacroix ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 2961*f090d951SRémi Lacroix ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr); 29620298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 29630298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 296462471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 296562471d69SBarry Smith 29666bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 29676bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2968ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 296962471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 297062471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 297162471d69SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 297262471d69SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29736a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29746a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 297562471d69SBarry Smith if (reuse == MAT_REUSE_MATRIX) { 297662471d69SBarry Smith ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); 297762471d69SBarry Smith } else { 297862471d69SBarry Smith *newmat = B; 297962471d69SBarry Smith } 298062471d69SBarry Smith PetscFunctionReturn(0); 298162471d69SBarry Smith } 298262471d69SBarry Smith 2983450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 29848cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 2985450b117fSShri Abhyankar #endif 2986450b117fSShri Abhyankar 29870bad9183SKris Buschelman /*MC 2988fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29890bad9183SKris Buschelman 29900bad9183SKris Buschelman Options Database Keys: 29918c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29928c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29938c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29940bad9183SKris Buschelman 29950bad9183SKris Buschelman Level: beginner 29960bad9183SKris Buschelman 29970bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29980bad9183SKris Buschelman M*/ 29990bad9183SKris Buschelman 30008cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 3001c0cdd4a1SDahai Guo 3002a23d5eceSKris Buschelman #undef __FUNCT__ 30034a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 30048cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 3005273d9f13SBarry Smith { 3006273d9f13SBarry Smith Mat_MPIBAIJ *b; 3007dfbe8321SBarry Smith PetscErrorCode ierr; 3008ace3abfcSBarry Smith PetscBool flg; 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith PetscFunctionBegin; 3011b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 301282502324SSatish Balay B->data = (void*)b; 301382502324SSatish Balay 3014273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 3015273d9f13SBarry Smith B->assembled = PETSC_FALSE; 3016273d9f13SBarry Smith 3017273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 3018ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 3019ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 3020273d9f13SBarry Smith 3021273d9f13SBarry Smith /* build local table of row and column ownerships */ 3022785e854fSJed Brown ierr = PetscMalloc1((b->size+1),&b->rangebs);CHKERRQ(ierr); 3023273d9f13SBarry Smith 3024273d9f13SBarry Smith /* build cache for off array entries formed */ 3025ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 302626fbe8dcSKarl Rupp 3027273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 30280298fd71SBarry Smith b->colmap = NULL; 30290298fd71SBarry Smith b->garray = NULL; 3030273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 3031273d9f13SBarry Smith 3032273d9f13SBarry Smith /* stuff used in block assembly */ 3033273d9f13SBarry Smith b->barray = 0; 3034273d9f13SBarry Smith 3035273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 3036273d9f13SBarry Smith b->lvec = 0; 3037273d9f13SBarry Smith b->Mvctx = 0; 3038273d9f13SBarry Smith 3039273d9f13SBarry Smith /* stuff for MatGetRow() */ 3040273d9f13SBarry Smith b->rowindices = 0; 3041273d9f13SBarry Smith b->rowvalues = 0; 3042273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 3043273d9f13SBarry Smith 3044273d9f13SBarry Smith /* hash table stuff */ 3045273d9f13SBarry Smith b->ht = 0; 3046273d9f13SBarry Smith b->hd = 0; 3047273d9f13SBarry Smith b->ht_size = 0; 3048273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 3049273d9f13SBarry Smith b->ht_fact = 0; 3050273d9f13SBarry Smith b->ht_total_ct = 0; 3051273d9f13SBarry Smith b->ht_insert_ct = 0; 3052273d9f13SBarry Smith 30537a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 30547a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 30557a868f3eSHong Zhang 3056ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 30570298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 3058273d9f13SBarry Smith if (flg) { 3059f6275e2eSBarry Smith PetscReal fact = 1.39; 30604e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 30610298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 3062273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 3063273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 30641e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3065273d9f13SBarry Smith } 30668c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 30678c07d4e3SBarry Smith 3068450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 3069bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_baij_mumps);CHKERRQ(ierr); 3070450b117fSShri Abhyankar #endif 3071bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3072bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 3073bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 3074bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3075bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3076bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3077bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3078bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 3079bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 3080bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 3081bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr); 308217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3083273d9f13SBarry Smith PetscFunctionReturn(0); 3084273d9f13SBarry Smith } 3085273d9f13SBarry Smith 3086209238afSKris Buschelman /*MC 3087002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3088209238afSKris Buschelman 3089209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3090209238afSKris Buschelman and MATMPIBAIJ otherwise. 3091209238afSKris Buschelman 3092209238afSKris Buschelman Options Database Keys: 3093209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3094209238afSKris Buschelman 3095209238afSKris Buschelman Level: beginner 3096209238afSKris Buschelman 309769b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3098209238afSKris Buschelman M*/ 3099209238afSKris Buschelman 31004a2ae208SSatish Balay #undef __FUNCT__ 31014a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3102273d9f13SBarry Smith /*@C 3103aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3104273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3105273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3106273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3107273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3108273d9f13SBarry Smith 3109273d9f13SBarry Smith Collective on Mat 3110273d9f13SBarry Smith 3111273d9f13SBarry Smith Input Parameters: 31121c4f3114SJed Brown + B - the matrix 3113e8271787SHong Zhang . bs - size of block 3114273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3115273d9f13SBarry Smith submatrix (same for all local rows) 3116273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3117273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 31180298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 311995742e49SBarry Smith set it even if it is zero. 3120273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3121273d9f13SBarry Smith submatrix (same for all local rows). 3122273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3123273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 31240298fd71SBarry Smith each block row) or NULL. 3125273d9f13SBarry Smith 312649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3127273d9f13SBarry Smith 3128273d9f13SBarry Smith Options Database Keys: 31298c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31308c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3131273d9f13SBarry Smith 3132273d9f13SBarry Smith Notes: 3133273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3134273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3135273d9f13SBarry Smith 3136273d9f13SBarry Smith Storage Information: 3137273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3138273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3139273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3140273d9f13SBarry Smith local matrix (a rectangular submatrix). 3141273d9f13SBarry Smith 3142273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3143273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 31440298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3145273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3146273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3147273d9f13SBarry Smith 3148273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3149273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3150273d9f13SBarry Smith 3151273d9f13SBarry Smith .vb 3152273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3153a4b1a0f6SJed Brown -------------------------- 3154273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3155273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3156273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3157a4b1a0f6SJed Brown -------------------------- 3158273d9f13SBarry Smith .ve 3159273d9f13SBarry Smith 3160273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3161273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3162273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3163273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3164273d9f13SBarry Smith 3165273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3166273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3167273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3168273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3169273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3170273d9f13SBarry Smith matrices. 3171273d9f13SBarry Smith 3172aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3173aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3174aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3175aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3176aa95bbe8SBarry Smith 3177273d9f13SBarry Smith Level: intermediate 3178273d9f13SBarry Smith 3179273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3180273d9f13SBarry Smith 3181ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3182273d9f13SBarry Smith @*/ 31837087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3184273d9f13SBarry Smith { 31854ac538c5SBarry Smith PetscErrorCode ierr; 3186273d9f13SBarry Smith 3187273d9f13SBarry Smith PetscFunctionBegin; 31886ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 31896ba663aaSJed Brown PetscValidType(B,1); 31906ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 31914ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3192273d9f13SBarry Smith PetscFunctionReturn(0); 3193273d9f13SBarry Smith } 3194273d9f13SBarry Smith 31954a2ae208SSatish Balay #undef __FUNCT__ 319669b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ" 319779bdfe76SSatish Balay /*@C 319869b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 319979bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 320079bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 320179bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 320279bdfe76SSatish Balay performance can be increased by more than a factor of 50. 320379bdfe76SSatish Balay 3204db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3205db81eaa0SLois Curfman McInnes 320679bdfe76SSatish Balay Input Parameters: 3207db81eaa0SLois Curfman McInnes + comm - MPI communicator 320879bdfe76SSatish Balay . bs - size of blockk 320979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 321092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 321192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 321292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 321392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 321492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3215be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3216be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 321747a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 321879bdfe76SSatish Balay submatrix (same for all local rows) 321947a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 322092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 32210298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 322295742e49SBarry Smith and set it even if it is zero. 322347a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 322479bdfe76SSatish Balay submatrix (same for all local rows). 322547a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 322692e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 32270298fd71SBarry Smith each block row) or NULL. 322879bdfe76SSatish Balay 322979bdfe76SSatish Balay Output Parameter: 323079bdfe76SSatish Balay . A - the matrix 323179bdfe76SSatish Balay 3232db81eaa0SLois Curfman McInnes Options Database Keys: 32338c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 32348c07d4e3SBarry Smith - -mat_use_hash_table <fact> 32353ffaccefSLois Curfman McInnes 3236175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3237ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3238175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3239175b88e8SBarry Smith 3240b259b22eSLois Curfman McInnes Notes: 324149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 324249a6f317SBarry Smith 324347a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 324447a75d0bSBarry Smith 324579bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 324679bdfe76SSatish Balay (possibly both). 324779bdfe76SSatish Balay 3248be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3249be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3250be79a94dSBarry Smith 325179bdfe76SSatish Balay Storage Information: 325279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 325379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 325479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 325579bdfe76SSatish Balay local matrix (a rectangular submatrix). 325679bdfe76SSatish Balay 325779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 325879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 32590298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 326079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 326179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 326279bdfe76SSatish Balay 326379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 326479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 326579bdfe76SSatish Balay 3266db81eaa0SLois Curfman McInnes .vb 3267db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3268a4b1a0f6SJed Brown -------------------------- 3269db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3270db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3271db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3272a4b1a0f6SJed Brown -------------------------- 3273db81eaa0SLois Curfman McInnes .ve 327479bdfe76SSatish Balay 327579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 327679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 327779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 327857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 327979bdfe76SSatish Balay 3280d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3281d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 328279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 328392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 328492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32856da5968aSLois Curfman McInnes matrices. 328679bdfe76SSatish Balay 3287027ccd11SLois Curfman McInnes Level: intermediate 3288027ccd11SLois Curfman McInnes 328992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 329079bdfe76SSatish Balay 329169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 329279bdfe76SSatish Balay @*/ 329369b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 329479bdfe76SSatish Balay { 32956849ba73SBarry Smith PetscErrorCode ierr; 3296b24ad042SBarry Smith PetscMPIInt size; 329779bdfe76SSatish Balay 3298d64ed03dSBarry Smith PetscFunctionBegin; 3299f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3300f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3301d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3302273d9f13SBarry Smith if (size > 1) { 3303273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3304273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3305273d9f13SBarry Smith } else { 3306273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3307273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 33083914022bSBarry Smith } 33093a40ed3dSBarry Smith PetscFunctionReturn(0); 331079bdfe76SSatish Balay } 3311026e39d0SSatish Balay 33124a2ae208SSatish Balay #undef __FUNCT__ 33134a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 33146849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 33150ac07820SSatish Balay { 33160ac07820SSatish Balay Mat mat; 33170ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3318dfbe8321SBarry Smith PetscErrorCode ierr; 3319b24ad042SBarry Smith PetscInt len=0; 33200ac07820SSatish Balay 3321d64ed03dSBarry Smith PetscFunctionBegin; 33220ac07820SSatish Balay *newmat = 0; 3323ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3324d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 33257adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 33261d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 33277fff6886SHong Zhang 3328d5f3da31SBarry Smith mat->factortype = matin->factortype; 3329273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 33300ac07820SSatish Balay mat->assembled = PETSC_TRUE; 33317fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 33327fff6886SHong Zhang 3333273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3334d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 33350ac07820SSatish Balay a->bs2 = oldmat->bs2; 33360ac07820SSatish Balay a->mbs = oldmat->mbs; 33370ac07820SSatish Balay a->nbs = oldmat->nbs; 33380ac07820SSatish Balay a->Mbs = oldmat->Mbs; 33390ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33400ac07820SSatish Balay 33411e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 33421e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3343899cda47SBarry Smith 33440ac07820SSatish Balay a->size = oldmat->size; 33450ac07820SSatish Balay a->rank = oldmat->rank; 3346aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3347aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3348aef5e8e0SSatish Balay a->rowindices = 0; 33490ac07820SSatish Balay a->rowvalues = 0; 33500ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 335130793edcSSatish Balay a->barray = 0; 3352899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3353899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3354899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3355899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33560ac07820SSatish Balay 3357133cdb44SSatish Balay /* hash table stuff */ 3358133cdb44SSatish Balay a->ht = 0; 3359133cdb44SSatish Balay a->hd = 0; 3360133cdb44SSatish Balay a->ht_size = 0; 3361133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 336225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3363133cdb44SSatish Balay a->ht_total_ct = 0; 3364133cdb44SSatish Balay a->ht_insert_ct = 0; 3365133cdb44SSatish Balay 3366899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33670ac07820SSatish Balay if (oldmat->colmap) { 3368aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 33690f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 337048e59246SSatish Balay #else 3371785e854fSJed Brown ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr); 33723bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3373b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 337448e59246SSatish Balay #endif 33750ac07820SSatish Balay } else a->colmap = 0; 33764beb1cfeSHong Zhang 33770ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3378785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 33793bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3380b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33810ac07820SSatish Balay } else a->garray = 0; 33820ac07820SSatish Balay 3383ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33840ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 33853bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 33860ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 33873bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 33887fff6886SHong Zhang 33892e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 33903bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 33912e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 33923bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3393140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33940ac07820SSatish Balay *newmat = mat; 33953a40ed3dSBarry Smith PetscFunctionReturn(0); 33960ac07820SSatish Balay } 339757b952d6SSatish Balay 33984a2ae208SSatish Balay #undef __FUNCT__ 33995bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ" 3400112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 34014683f7a4SShri Abhyankar { 34024683f7a4SShri Abhyankar PetscErrorCode ierr; 34034683f7a4SShri Abhyankar int fd; 34044683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 34054683f7a4SShri Abhyankar PetscScalar *vals,*buf; 3406ce94432eSBarry Smith MPI_Comm comm; 34074683f7a4SShri Abhyankar MPI_Status status; 34084683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 34094683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 34100298fd71SBarry Smith PetscInt *locrowlens = NULL,*procsnz = NULL,*browners = NULL; 34114683f7a4SShri Abhyankar PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 34124683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 34130298fd71SBarry Smith PetscInt *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount; 34144683f7a4SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols; 34154683f7a4SShri Abhyankar 34164683f7a4SShri Abhyankar PetscFunctionBegin; 3417ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 34180298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 34190298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 34204683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 34214683f7a4SShri Abhyankar 34224683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 34234683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 34244683f7a4SShri Abhyankar if (!rank) { 34254683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 34264683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 34274683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 34284683f7a4SShri Abhyankar } 34294683f7a4SShri Abhyankar 34304683f7a4SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 34314683f7a4SShri Abhyankar 34324683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 34334683f7a4SShri Abhyankar M = header[1]; N = header[2]; 34344683f7a4SShri Abhyankar 34354683f7a4SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 34364683f7a4SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 34374683f7a4SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 34384683f7a4SShri Abhyankar 34394683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 34404683f7a4SShri Abhyankar if (sizesset) { 34414683f7a4SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 34424683f7a4SShri Abhyankar } 3443abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 3444abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 34454683f7a4SShri Abhyankar 3446ce94432eSBarry Smith if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices"); 34474683f7a4SShri Abhyankar 34484683f7a4SShri Abhyankar /* 34494683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 34504683f7a4SShri Abhyankar divisible by the blocksize 34514683f7a4SShri Abhyankar */ 34524683f7a4SShri Abhyankar Mbs = M/bs; 34534683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 34544683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 34554683f7a4SShri Abhyankar else Mbs++; 34564683f7a4SShri Abhyankar if (extra_rows && !rank) { 34574683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 34584683f7a4SShri Abhyankar } 34594683f7a4SShri Abhyankar 34604683f7a4SShri Abhyankar /* determine ownership of all rows */ 34614683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 34624683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 34634683f7a4SShri Abhyankar m = mbs*bs; 34644683f7a4SShri Abhyankar } else { /* User set */ 34654683f7a4SShri Abhyankar m = newmat->rmap->n; 34664683f7a4SShri Abhyankar mbs = m/bs; 34674683f7a4SShri Abhyankar } 3468dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 34694683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 34704683f7a4SShri Abhyankar 34714683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 34724683f7a4SShri Abhyankar if (!rank) { 34734683f7a4SShri Abhyankar mmax = rowners[1]; 34741251c579SMatthew G Knepley for (i=2; i<=size; i++) { 34754683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 34764683f7a4SShri Abhyankar } 34774683f7a4SShri Abhyankar mmax*=bs; 34783964eb88SJed Brown } else mmax = -1; /* unused, but compiler warns anyway */ 34794683f7a4SShri Abhyankar 34804683f7a4SShri Abhyankar rowners[0] = 0; 34814683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 34824683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 34834683f7a4SShri Abhyankar rstart = rowners[rank]; 34844683f7a4SShri Abhyankar rend = rowners[rank+1]; 34854683f7a4SShri Abhyankar 34864683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 3487785e854fSJed Brown ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr); 34884683f7a4SShri Abhyankar if (!rank) { 34894683f7a4SShri Abhyankar mend = m; 34904683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 34914683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 34924683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 3493785e854fSJed Brown ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr); 34941795a4d1SJed Brown ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr); 34954683f7a4SShri Abhyankar for (j=0; j<m; j++) { 34964683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 34974683f7a4SShri Abhyankar } 34984683f7a4SShri Abhyankar for (i=1; i<size; i++) { 34994683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 35004683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 35014683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 35024683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 35034683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 35044683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 35054683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 35064683f7a4SShri Abhyankar } 35074683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 35084683f7a4SShri Abhyankar } 35094683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 35104683f7a4SShri Abhyankar } else { 35114683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 35124683f7a4SShri Abhyankar } 35134683f7a4SShri Abhyankar 35144683f7a4SShri Abhyankar if (!rank) { 35154683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 35164683f7a4SShri Abhyankar maxnz = procsnz[0]; 35174683f7a4SShri Abhyankar for (i=1; i<size; i++) { 35184683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 35194683f7a4SShri Abhyankar } 3520785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 35214683f7a4SShri Abhyankar 35224683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 35234683f7a4SShri Abhyankar nz = procsnz[0]; 3524785e854fSJed Brown ierr = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr); 35254683f7a4SShri Abhyankar mycols = ibuf; 35264683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 35274683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 352826fbe8dcSKarl Rupp if (size == 1) { 352926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 353026fbe8dcSKarl Rupp } 35314683f7a4SShri Abhyankar 35324683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 35334683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 35344683f7a4SShri Abhyankar nz = procsnz[i]; 35354683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 35364683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 35374683f7a4SShri Abhyankar } 35384683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 35394683f7a4SShri Abhyankar if (size != 1) { 35404683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 35414683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 35424683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 35434683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 35444683f7a4SShri Abhyankar } 35454683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 35464683f7a4SShri Abhyankar } else { 35474683f7a4SShri Abhyankar /* determine buffer space needed for message */ 35484683f7a4SShri Abhyankar nz = 0; 35494683f7a4SShri Abhyankar for (i=0; i<m; i++) { 35504683f7a4SShri Abhyankar nz += locrowlens[i]; 35514683f7a4SShri Abhyankar } 3552785e854fSJed Brown ierr = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr); 35534683f7a4SShri Abhyankar mycols = ibuf; 35544683f7a4SShri Abhyankar /* receive message of column indices*/ 35554683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 35564683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 35574683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 35584683f7a4SShri Abhyankar } 35594683f7a4SShri Abhyankar 35604683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 3561dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 35621795a4d1SJed Brown ierr = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 35634683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 35644683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 35654683f7a4SShri Abhyankar dcount = 0; 35664683f7a4SShri Abhyankar odcount = 0; 35674683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 35684683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 35694683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 35704683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 35714683f7a4SShri Abhyankar if (!mask[tmp]) { 35724683f7a4SShri Abhyankar mask[tmp] = 1; 35734683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 35744683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 35754683f7a4SShri Abhyankar } 35764683f7a4SShri Abhyankar } 35774683f7a4SShri Abhyankar rowcount++; 35784683f7a4SShri Abhyankar } 35794683f7a4SShri Abhyankar 35804683f7a4SShri Abhyankar dlens[i] = dcount; 35814683f7a4SShri Abhyankar odlens[i] = odcount; 35824683f7a4SShri Abhyankar 35834683f7a4SShri Abhyankar /* zero out the mask elements we set */ 35844683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 35854683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 35864683f7a4SShri Abhyankar } 35874683f7a4SShri Abhyankar 35884683f7a4SShri Abhyankar 35894683f7a4SShri Abhyankar if (!sizesset) { 35904683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 35914683f7a4SShri Abhyankar } 35924683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 35934683f7a4SShri Abhyankar 35944683f7a4SShri Abhyankar if (!rank) { 3595785e854fSJed Brown ierr = PetscMalloc1((maxnz+1),&buf);CHKERRQ(ierr); 35964683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 35974683f7a4SShri Abhyankar nz = procsnz[0]; 35984683f7a4SShri Abhyankar vals = buf; 35994683f7a4SShri Abhyankar mycols = ibuf; 36004683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 36014683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 360226fbe8dcSKarl Rupp if (size == 1) { 360326fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 360426fbe8dcSKarl Rupp } 36054683f7a4SShri Abhyankar 36064683f7a4SShri Abhyankar /* insert into matrix */ 36074683f7a4SShri Abhyankar jj = rstart*bs; 36084683f7a4SShri Abhyankar for (i=0; i<m; i++) { 36094683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 36104683f7a4SShri Abhyankar mycols += locrowlens[i]; 36114683f7a4SShri Abhyankar vals += locrowlens[i]; 36124683f7a4SShri Abhyankar jj++; 36134683f7a4SShri Abhyankar } 36144683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 36154683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 36164683f7a4SShri Abhyankar nz = procsnz[i]; 36174683f7a4SShri Abhyankar vals = buf; 36184683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3619479e424cSMichael Lange ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36204683f7a4SShri Abhyankar } 36214683f7a4SShri Abhyankar /* the last proc */ 36224683f7a4SShri Abhyankar if (size != 1) { 36234683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 36244683f7a4SShri Abhyankar vals = buf; 36254683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 36264683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 3627479e424cSMichael Lange ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36284683f7a4SShri Abhyankar } 36294683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 36304683f7a4SShri Abhyankar } else { 36314683f7a4SShri Abhyankar /* receive numeric values */ 3632785e854fSJed Brown ierr = PetscMalloc1((nz+1),&buf);CHKERRQ(ierr); 36334683f7a4SShri Abhyankar 36344683f7a4SShri Abhyankar /* receive message of values*/ 36354683f7a4SShri Abhyankar vals = buf; 36364683f7a4SShri Abhyankar mycols = ibuf; 3637479e424cSMichael Lange ierr = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36384683f7a4SShri Abhyankar 36394683f7a4SShri Abhyankar /* insert into matrix */ 36404683f7a4SShri Abhyankar jj = rstart*bs; 36414683f7a4SShri Abhyankar for (i=0; i<m; i++) { 36424683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 36434683f7a4SShri Abhyankar mycols += locrowlens[i]; 36444683f7a4SShri Abhyankar vals += locrowlens[i]; 36454683f7a4SShri Abhyankar jj++; 36464683f7a4SShri Abhyankar } 36474683f7a4SShri Abhyankar } 36484683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 36494683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 36504683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 36514683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 36524683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 36534683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36544683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36554683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36564683f7a4SShri Abhyankar PetscFunctionReturn(0); 36574683f7a4SShri Abhyankar } 36584683f7a4SShri Abhyankar 36594683f7a4SShri Abhyankar #undef __FUNCT__ 36604a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3661133cdb44SSatish Balay /*@ 3662133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3663133cdb44SSatish Balay 3664133cdb44SSatish Balay Input Parameters: 3665133cdb44SSatish Balay . mat - the matrix 3666133cdb44SSatish Balay . fact - factor 3667133cdb44SSatish Balay 3668c5eb9154SBarry Smith Not Collective, each process can use a different factor 3669fee21e36SBarry Smith 36708c890885SBarry Smith Level: advanced 36718c890885SBarry Smith 3672133cdb44SSatish Balay Notes: 36738c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3674133cdb44SSatish Balay 3675133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3676133cdb44SSatish Balay 3677133cdb44SSatish Balay .seealso: MatSetOption() 3678133cdb44SSatish Balay @*/ 36797087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3680133cdb44SSatish Balay { 36814ac538c5SBarry Smith PetscErrorCode ierr; 36825bf65638SKris Buschelman 36835bf65638SKris Buschelman PetscFunctionBegin; 36844ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 36855bf65638SKris Buschelman PetscFunctionReturn(0); 36865bf65638SKris Buschelman } 36875bf65638SKris Buschelman 36885bf65638SKris Buschelman #undef __FUNCT__ 36895bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 36907087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36915bf65638SKris Buschelman { 369225fdafccSSatish Balay Mat_MPIBAIJ *baij; 3693133cdb44SSatish Balay 3694133cdb44SSatish Balay PetscFunctionBegin; 3695133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3696133cdb44SSatish Balay baij->ht_fact = fact; 3697133cdb44SSatish Balay PetscFunctionReturn(0); 3698133cdb44SSatish Balay } 3699f2a5309cSSatish Balay 37004a2ae208SSatish Balay #undef __FUNCT__ 37014a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 37029230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3703f2a5309cSSatish Balay { 3704f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 37055fd66863SKarl Rupp 3706f2a5309cSSatish Balay PetscFunctionBegin; 370721e72a00SBarry Smith if (Ad) *Ad = a->A; 370821e72a00SBarry Smith if (Ao) *Ao = a->B; 370921e72a00SBarry Smith if (colmap) *colmap = a->garray; 3710f2a5309cSSatish Balay PetscFunctionReturn(0); 3711f2a5309cSSatish Balay } 371285535b8eSBarry Smith 371385535b8eSBarry Smith /* 371485535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 371585535b8eSBarry Smith */ 371685535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 371785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 371885535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 371985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 372085535b8eSBarry Smith #endif 372185535b8eSBarry Smith 372285535b8eSBarry Smith #undef __FUNCT__ 372385535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 372485535b8eSBarry Smith /*@C 372585535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 372685535b8eSBarry Smith 372785535b8eSBarry Smith Collective on Mat 372885535b8eSBarry Smith 372985535b8eSBarry Smith Input Parameters: 373085535b8eSBarry Smith + mat - the matrix 373185535b8eSBarry Smith . min - number of input rows 373285535b8eSBarry Smith . im - input rows 373385535b8eSBarry Smith . nin - number of input columns 373485535b8eSBarry Smith . in - input columns 373585535b8eSBarry Smith . v - numerical values input 373685535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 373785535b8eSBarry Smith 373885535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 373985535b8eSBarry Smith 374085535b8eSBarry Smith Level: advanced 374185535b8eSBarry Smith 374285535b8eSBarry Smith .seealso: MatSetValuesBlocked() 374385535b8eSBarry Smith @*/ 374485535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 374585535b8eSBarry Smith { 374685535b8eSBarry Smith /* convert input arguments to C version */ 374785535b8eSBarry Smith Mat mat = *matin; 374885535b8eSBarry Smith PetscInt m = *min, n = *nin; 374985535b8eSBarry Smith InsertMode addv = *addvin; 375085535b8eSBarry Smith 375185535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 375285535b8eSBarry Smith const MatScalar *value; 375385535b8eSBarry Smith MatScalar *barray = baij->barray; 3754ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 375585535b8eSBarry Smith PetscErrorCode ierr; 375685535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 375785535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3758d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 375985535b8eSBarry Smith 376085535b8eSBarry Smith PetscFunctionBegin; 376185535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 376226fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 376385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3764e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3765e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 376685535b8eSBarry Smith #endif 376785535b8eSBarry Smith if (mat->assembled) { 376885535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 376985535b8eSBarry Smith mat->assembled = PETSC_FALSE; 377085535b8eSBarry Smith } 377185535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 377285535b8eSBarry Smith 377385535b8eSBarry Smith 377485535b8eSBarry Smith if (!barray) { 3775785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 377685535b8eSBarry Smith baij->barray = barray; 377785535b8eSBarry Smith } 377885535b8eSBarry Smith 377926fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 378026fbe8dcSKarl Rupp else stepval = (m-1)*bs; 378126fbe8dcSKarl Rupp 378285535b8eSBarry Smith for (i=0; i<m; i++) { 378385535b8eSBarry Smith if (im[i] < 0) continue; 378485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3785e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 378685535b8eSBarry Smith #endif 378785535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 378885535b8eSBarry Smith row = im[i] - rstart; 378985535b8eSBarry Smith for (j=0; j<n; j++) { 379085535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 379185535b8eSBarry Smith if ((roworiented) && (n == 1)) { 379285535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 379385535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 379485535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 379585535b8eSBarry Smith } else { /* Here a copy is required */ 379685535b8eSBarry Smith if (roworiented) { 379785535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 379885535b8eSBarry Smith } else { 379985535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 380085535b8eSBarry Smith } 380185535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 380285535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 380385535b8eSBarry Smith *barray++ = *value++; 380485535b8eSBarry Smith } 380585535b8eSBarry Smith } 380685535b8eSBarry Smith barray -=bs2; 380785535b8eSBarry Smith } 380885535b8eSBarry Smith 380985535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 381085535b8eSBarry Smith col = in[j] - cstart; 381197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 381226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 381385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3814cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 381585535b8eSBarry Smith #endif 381685535b8eSBarry Smith else { 381785535b8eSBarry Smith if (mat->was_assembled) { 381885535b8eSBarry Smith if (!baij->colmap) { 3819ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 382085535b8eSBarry Smith } 382185535b8eSBarry Smith 382285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 382385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 382485535b8eSBarry Smith { PetscInt data; 382585535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3826e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 382785535b8eSBarry Smith } 382885535b8eSBarry Smith #else 3829e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 383085535b8eSBarry Smith #endif 383185535b8eSBarry Smith #endif 383285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 383385535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 383485535b8eSBarry Smith col = (col - 1)/bs; 383585535b8eSBarry Smith #else 383685535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 383785535b8eSBarry Smith #endif 383885535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3839ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 384085535b8eSBarry Smith col = in[j]; 384185535b8eSBarry Smith } 384226fbe8dcSKarl Rupp } else col = in[j]; 384397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 384485535b8eSBarry Smith } 384585535b8eSBarry Smith } 384685535b8eSBarry Smith } else { 384785535b8eSBarry Smith if (!baij->donotstash) { 384885535b8eSBarry Smith if (roworiented) { 384985535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 385085535b8eSBarry Smith } else { 385185535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 385285535b8eSBarry Smith } 385385535b8eSBarry Smith } 385485535b8eSBarry Smith } 385585535b8eSBarry Smith } 385685535b8eSBarry Smith 385785535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 385885535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 385985535b8eSBarry Smith PetscFunctionReturn(0); 386085535b8eSBarry Smith } 3861dfb205c3SBarry Smith 3862dfb205c3SBarry Smith #undef __FUNCT__ 3863dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays" 3864dfb205c3SBarry Smith /*@ 3865dfb205c3SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard 3866dfb205c3SBarry Smith CSR format the local rows. 3867dfb205c3SBarry Smith 3868dfb205c3SBarry Smith Collective on MPI_Comm 3869dfb205c3SBarry Smith 3870dfb205c3SBarry Smith Input Parameters: 3871dfb205c3SBarry Smith + comm - MPI communicator 3872dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3873dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3874dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3875dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3876dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3877dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3878dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3879dfb205c3SBarry Smith . i - row indices 3880dfb205c3SBarry Smith . j - column indices 3881dfb205c3SBarry Smith - a - matrix values 3882dfb205c3SBarry Smith 3883dfb205c3SBarry Smith Output Parameter: 3884dfb205c3SBarry Smith . mat - the matrix 3885dfb205c3SBarry Smith 3886dfb205c3SBarry Smith Level: intermediate 3887dfb205c3SBarry Smith 3888dfb205c3SBarry Smith Notes: 3889dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3890dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3891dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3892dfb205c3SBarry Smith 38933adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 38943adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 38953adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 38963adadaf3SJed Brown with column-major ordering within blocks. 38973adadaf3SJed Brown 3898dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3899dfb205c3SBarry Smith 3900dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3901dfb205c3SBarry Smith 3902dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 390369b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3904dfb205c3SBarry Smith @*/ 39057087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3906dfb205c3SBarry Smith { 3907dfb205c3SBarry Smith PetscErrorCode ierr; 3908dfb205c3SBarry Smith 3909dfb205c3SBarry Smith PetscFunctionBegin; 3910f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3911dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3912dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3913dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3914dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3915d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3916dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3917d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3918dfb205c3SBarry Smith PetscFunctionReturn(0); 3919dfb205c3SBarry Smith } 3920