1bba1ac68SSatish Balay /*$Id: mpibaij.c,v 1.234 2001/09/25 22:56:49 balay Exp $*/ 279bdfe76SSatish Balay 3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 579bdfe76SSatish Balay 6ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIBAIJ(Mat); 7ca44d042SBarry Smith EXTERN int DisAssemble_MPIBAIJ(Mat); 8ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 9ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 10*f15d580aSBarry Smith EXTERN int MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int [],PetscScalar []); 11*f15d580aSBarry Smith EXTERN int MatSetValues_SeqBAIJ(Mat,int,const int[],int,const int [],const PetscScalar [],InsertMode); 12*f15d580aSBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 1387828ca2SBarry Smith EXTERN int MatGetRow_SeqBAIJ(Mat,int,int*,int**,PetscScalar**); 1487828ca2SBarry Smith EXTERN int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,PetscScalar**); 15ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqBAIJ(Mat); 1687828ca2SBarry Smith EXTERN int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*); 1793fea6afSBarry Smith 1893fea6afSBarry Smith /* UGLY, ugly, ugly 1987828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 2093fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 2193fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2293fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2393fea6afSBarry Smith into the single precision data structures. 2493fea6afSBarry Smith */ 2593fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 26ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 27ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 28ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 29ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 30ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 3193fea6afSBarry Smith #else 326fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3393fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3493fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 356fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 366fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3793fea6afSBarry Smith #endif 383b2fbd54SBarry Smith 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ" 417843d17aSBarry Smith int MatGetRowMax_MPIBAIJ(Mat A,Vec v) 427843d17aSBarry Smith { 437843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 447843d17aSBarry Smith int ierr,i; 4587828ca2SBarry Smith PetscScalar *va,*vb; 467843d17aSBarry Smith Vec vtmp; 477843d17aSBarry Smith 487843d17aSBarry Smith PetscFunctionBegin; 497843d17aSBarry Smith 507843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 51273d9f13SBarry Smith ierr = VecGetArray(v,&va);CHKERRQ(ierr); 527843d17aSBarry Smith 53ac355199SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr); 547843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 55273d9f13SBarry Smith ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 567843d17aSBarry Smith 57273d9f13SBarry Smith for (i=0; i<A->m; i++){ 58273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 597843d17aSBarry Smith } 607843d17aSBarry Smith 617843d17aSBarry Smith ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 627843d17aSBarry Smith ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 63ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionReturn(0); 667843d17aSBarry Smith } 677843d17aSBarry Smith 687fc3c18eSBarry Smith EXTERN_C_BEGIN 694a2ae208SSatish Balay #undef __FUNCT__ 704a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 717fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 727fc3c18eSBarry Smith { 737fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 747fc3c18eSBarry Smith int ierr; 757fc3c18eSBarry Smith 767fc3c18eSBarry Smith PetscFunctionBegin; 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 787fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 797fc3c18eSBarry Smith PetscFunctionReturn(0); 807fc3c18eSBarry Smith } 817fc3c18eSBarry Smith EXTERN_C_END 827fc3c18eSBarry Smith 837fc3c18eSBarry Smith EXTERN_C_BEGIN 844a2ae208SSatish Balay #undef __FUNCT__ 854a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 867fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 877fc3c18eSBarry Smith { 887fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 897fc3c18eSBarry Smith int ierr; 907fc3c18eSBarry Smith 917fc3c18eSBarry Smith PetscFunctionBegin; 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 937fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 947fc3c18eSBarry Smith PetscFunctionReturn(0); 957fc3c18eSBarry Smith } 967fc3c18eSBarry Smith EXTERN_C_END 977fc3c18eSBarry Smith 98537820f0SBarry Smith /* 99537820f0SBarry Smith Local utility routine that creates a mapping from the global column 10057b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10157b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10257b952d6SSatish Balay length of colmap equals the global matrix length. 10357b952d6SSatish Balay */ 1044a2ae208SSatish Balay #undef __FUNCT__ 1054a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 10657b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 10757b952d6SSatish Balay { 10857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 110dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 11157b952d6SSatish Balay 112d64ed03dSBarry Smith PetscFunctionBegin; 113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 114f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11548e59246SSatish Balay for (i=0; i<nbs; i++){ 1160f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11748e59246SSatish Balay } 11848e59246SSatish Balay #else 11982502324SSatish Balay ierr = PetscMalloc((baij->Nbs+1)*sizeof(int),&baij->colmap);CHKERRQ(ierr); 120b0a32e0cSBarry Smith PetscLogObjectMemory(mat,baij->Nbs*sizeof(int)); 121549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 122928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12348e59246SSatish Balay #endif 1243a40ed3dSBarry Smith PetscFunctionReturn(0); 12557b952d6SSatish Balay } 12657b952d6SSatish Balay 12780c1aa95SSatish Balay #define CHUNKSIZE 10 12880c1aa95SSatish Balay 129f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13080c1aa95SSatish Balay { \ 13180c1aa95SSatish Balay \ 13280c1aa95SSatish Balay brow = row/bs; \ 13380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 134ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13580c1aa95SSatish Balay bcol = col/bs; \ 13680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 137ab26458aSBarry Smith low = 0; high = nrow; \ 138ab26458aSBarry Smith while (high-low > 3) { \ 139ab26458aSBarry Smith t = (low+high)/2; \ 140ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 141ab26458aSBarry Smith else low = t; \ 142ab26458aSBarry Smith } \ 143ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 147eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 148eada6651SSatish Balay else *bap = value; \ 149ac7a638eSSatish Balay goto a_noinsert; \ 15080c1aa95SSatish Balay } \ 15180c1aa95SSatish Balay } \ 15289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 15329bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 15480c1aa95SSatish Balay if (nrow >= rmax) { \ 15580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 15680c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1573eda8832SBarry Smith MatScalar *new_a; \ 15880c1aa95SSatish Balay \ 15929bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 16089280ab3SLois Curfman McInnes \ 16180c1aa95SSatish Balay /* malloc new storage space */ \ 1623eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 16382502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 16480c1aa95SSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 16580c1aa95SSatish Balay new_i = new_j + new_nz; \ 16680c1aa95SSatish Balay \ 16780c1aa95SSatish Balay /* copy over old data into new slots */ \ 16880c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 16980c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 170549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 17180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1723eda8832SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 1733eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 17487828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 175549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1763eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 17780c1aa95SSatish Balay /* free up old matrix storage */ \ 178606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 179606d414cSSatish Balay if (!a->singlemalloc) { \ 180606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 181606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 182606d414cSSatish Balay } \ 18380c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1847c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 18580c1aa95SSatish Balay \ 18680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 187ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 188b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 18980c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 19080c1aa95SSatish Balay a->reallocs++; \ 19180c1aa95SSatish Balay a->nz++; \ 19280c1aa95SSatish Balay } \ 19380c1aa95SSatish Balay N = nrow++ - 1; \ 19480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 19580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 19680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1973eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 19880c1aa95SSatish Balay } \ 1993eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 20080c1aa95SSatish Balay rp[_i] = bcol; \ 20180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 202ac7a638eSSatish Balay a_noinsert:; \ 20380c1aa95SSatish Balay ailen[brow] = nrow; \ 20480c1aa95SSatish Balay } 20557b952d6SSatish Balay 206ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 207ac7a638eSSatish Balay { \ 208ac7a638eSSatish Balay brow = row/bs; \ 209ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 210ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 211ac7a638eSSatish Balay bcol = col/bs; \ 212ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 213ac7a638eSSatish Balay low = 0; high = nrow; \ 214ac7a638eSSatish Balay while (high-low > 3) { \ 215ac7a638eSSatish Balay t = (low+high)/2; \ 216ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 217ac7a638eSSatish Balay else low = t; \ 218ac7a638eSSatish Balay } \ 219ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 220ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 221ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 222ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 223ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 224ac7a638eSSatish Balay else *bap = value; \ 225ac7a638eSSatish Balay goto b_noinsert; \ 226ac7a638eSSatish Balay } \ 227ac7a638eSSatish Balay } \ 22889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 22929bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 230ac7a638eSSatish Balay if (nrow >= rmax) { \ 231ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 23274c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 2333eda8832SBarry Smith MatScalar *new_a; \ 234ac7a638eSSatish Balay \ 23529bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 23689280ab3SLois Curfman McInnes \ 237ac7a638eSSatish Balay /* malloc new storage space */ \ 2383eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 23982502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 240ac7a638eSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 241ac7a638eSSatish Balay new_i = new_j + new_nz; \ 242ac7a638eSSatish Balay \ 243ac7a638eSSatish Balay /* copy over old data into new slots */ \ 244ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 24574c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 246549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 247ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 2483eda8832SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 2493eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 2503eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 251549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2523eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 253ac7a638eSSatish Balay /* free up old matrix storage */ \ 254606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 255606d414cSSatish Balay if (!b->singlemalloc) { \ 256606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 257606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 258606d414cSSatish Balay } \ 25974c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2607c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 261ac7a638eSSatish Balay \ 262ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 263ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 264b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 26574c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 26674c639caSSatish Balay b->reallocs++; \ 26774c639caSSatish Balay b->nz++; \ 268ac7a638eSSatish Balay } \ 269ac7a638eSSatish Balay N = nrow++ - 1; \ 270ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 271ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 272ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2733eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 274ac7a638eSSatish Balay } \ 2753eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 276ac7a638eSSatish Balay rp[_i] = bcol; \ 277ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 278ac7a638eSSatish Balay b_noinsert:; \ 279ac7a638eSSatish Balay bilen[brow] = nrow; \ 280ac7a638eSSatish Balay } 281ac7a638eSSatish Balay 28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2834a2ae208SSatish Balay #undef __FUNCT__ 2844a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 285*f15d580aSBarry Smith int MatSetValues_MPIBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 28657b952d6SSatish Balay { 2876fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 28893fea6afSBarry Smith int ierr,i,N = m*n; 2896fa18ffdSBarry Smith MatScalar *vsingle; 29093fea6afSBarry Smith 29193fea6afSBarry Smith PetscFunctionBegin; 2926fa18ffdSBarry Smith if (N > b->setvalueslen) { 2936fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 29482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2956fa18ffdSBarry Smith b->setvalueslen = N; 2966fa18ffdSBarry Smith } 2976fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2986fa18ffdSBarry Smith 29993fea6afSBarry Smith for (i=0; i<N; i++) { 30093fea6afSBarry Smith vsingle[i] = v[i]; 30193fea6afSBarry Smith } 30293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 30393fea6afSBarry Smith PetscFunctionReturn(0); 30493fea6afSBarry Smith } 30593fea6afSBarry Smith 3064a2ae208SSatish Balay #undef __FUNCT__ 3074a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 308*f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 30993fea6afSBarry Smith { 3106fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3116fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3126fa18ffdSBarry Smith MatScalar *vsingle; 31393fea6afSBarry Smith 31493fea6afSBarry Smith PetscFunctionBegin; 3156fa18ffdSBarry Smith if (N > b->setvalueslen) { 3166fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 31782502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3186fa18ffdSBarry Smith b->setvalueslen = N; 3196fa18ffdSBarry Smith } 3206fa18ffdSBarry Smith vsingle = b->setvaluescopy; 32193fea6afSBarry Smith for (i=0; i<N; i++) { 32293fea6afSBarry Smith vsingle[i] = v[i]; 32393fea6afSBarry Smith } 32493fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 32593fea6afSBarry Smith PetscFunctionReturn(0); 32693fea6afSBarry Smith } 3276fa18ffdSBarry Smith 3284a2ae208SSatish Balay #undef __FUNCT__ 3294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 330*f15d580aSBarry Smith int MatSetValues_MPIBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 3316fa18ffdSBarry Smith { 3326fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3336fa18ffdSBarry Smith int ierr,i,N = m*n; 3346fa18ffdSBarry Smith MatScalar *vsingle; 3356fa18ffdSBarry Smith 3366fa18ffdSBarry Smith PetscFunctionBegin; 3376fa18ffdSBarry Smith if (N > b->setvalueslen) { 3386fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 33982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3406fa18ffdSBarry Smith b->setvalueslen = N; 3416fa18ffdSBarry Smith } 3426fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3436fa18ffdSBarry Smith for (i=0; i<N; i++) { 3446fa18ffdSBarry Smith vsingle[i] = v[i]; 3456fa18ffdSBarry Smith } 3466fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3476fa18ffdSBarry Smith PetscFunctionReturn(0); 3486fa18ffdSBarry Smith } 3496fa18ffdSBarry Smith 3504a2ae208SSatish Balay #undef __FUNCT__ 3514a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 352*f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 3536fa18ffdSBarry Smith { 3546fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3556fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3566fa18ffdSBarry Smith MatScalar *vsingle; 3576fa18ffdSBarry Smith 3586fa18ffdSBarry Smith PetscFunctionBegin; 3596fa18ffdSBarry Smith if (N > b->setvalueslen) { 3606fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 36182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3626fa18ffdSBarry Smith b->setvalueslen = N; 3636fa18ffdSBarry Smith } 3646fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3656fa18ffdSBarry Smith for (i=0; i<N; i++) { 3666fa18ffdSBarry Smith vsingle[i] = v[i]; 3676fa18ffdSBarry Smith } 3686fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3696fa18ffdSBarry Smith PetscFunctionReturn(0); 3706fa18ffdSBarry Smith } 37193fea6afSBarry Smith #endif 37293fea6afSBarry Smith 3734a2ae208SSatish Balay #undef __FUNCT__ 374e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 375*f15d580aSBarry Smith int MatSetValues_MPIBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 37693fea6afSBarry Smith { 37757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 37893fea6afSBarry Smith MatScalar value; 379273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 3804fa0d573SSatish Balay int ierr,i,j,row,col; 381273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 3824fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 3834fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 38457b952d6SSatish Balay 385eada6651SSatish Balay /* Some Variables required in the macro */ 38680c1aa95SSatish Balay Mat A = baij->A; 38780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 388ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3893eda8832SBarry Smith MatScalar *aa=a->a; 390ac7a638eSSatish Balay 391ac7a638eSSatish Balay Mat B = baij->B; 392ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 393ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3943eda8832SBarry Smith MatScalar *ba=b->a; 395ac7a638eSSatish Balay 396ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 397ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 3983eda8832SBarry Smith MatScalar *ap,*bap; 39980c1aa95SSatish Balay 400d64ed03dSBarry Smith PetscFunctionBegin; 40157b952d6SSatish Balay for (i=0; i<m; i++) { 4025ef9f2a5SBarry Smith if (im[i] < 0) continue; 403aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 404590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 405639f9d9dSBarry Smith #endif 40657b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 40757b952d6SSatish Balay row = im[i] - rstart_orig; 40857b952d6SSatish Balay for (j=0; j<n; j++) { 40957b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 41057b952d6SSatish Balay col = in[j] - cstart_orig; 41157b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 412f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 41380c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 41473959e64SBarry Smith } else if (in[j] < 0) continue; 415aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 416590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[i],mat->N-1);} 417639f9d9dSBarry Smith #endif 41857b952d6SSatish Balay else { 41957b952d6SSatish Balay if (mat->was_assembled) { 420905e6a2fSBarry Smith if (!baij->colmap) { 421905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 422905e6a2fSBarry Smith } 423aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4240f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 425bba1ac68SSatish Balay col = col - 1; 42648e59246SSatish Balay #else 427bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 42848e59246SSatish Balay #endif 42957b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 43057b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 4318295de27SSatish Balay col = in[j]; 4329bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 4339bf004c3SSatish Balay B = baij->B; 4349bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 4359bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 4369bf004c3SSatish Balay ba=b->a; 437bba1ac68SSatish Balay } else col += in[j]%bs; 4388295de27SSatish Balay } else col = in[j]; 43957b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 44090da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 44190da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 44257b952d6SSatish Balay } 44357b952d6SSatish Balay } 444d64ed03dSBarry Smith } else { 44590f02eecSBarry Smith if (!baij->donotstash) { 446ff2fd236SBarry Smith if (roworiented) { 4476fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 448ff2fd236SBarry Smith } else { 4496fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 45057b952d6SSatish Balay } 45157b952d6SSatish Balay } 45257b952d6SSatish Balay } 45390f02eecSBarry Smith } 4543a40ed3dSBarry Smith PetscFunctionReturn(0); 45557b952d6SSatish Balay } 45657b952d6SSatish Balay 4574a2ae208SSatish Balay #undef __FUNCT__ 4584a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 459*f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 460ab26458aSBarry Smith { 461ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 462*f15d580aSBarry Smith const MatScalar *value; 463*f15d580aSBarry Smith MatScalar *barray=baij->barray; 464273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 465273d9f13SBarry Smith int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 466ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 467ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 468ab26458aSBarry Smith 469b16ae2b1SBarry Smith PetscFunctionBegin; 47030793edcSSatish Balay if(!barray) { 47182502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 47282502324SSatish Balay baij->barray = barray; 47330793edcSSatish Balay } 47430793edcSSatish Balay 475ab26458aSBarry Smith if (roworiented) { 476ab26458aSBarry Smith stepval = (n-1)*bs; 477ab26458aSBarry Smith } else { 478ab26458aSBarry Smith stepval = (m-1)*bs; 479ab26458aSBarry Smith } 480ab26458aSBarry Smith for (i=0; i<m; i++) { 4815ef9f2a5SBarry Smith if (im[i] < 0) continue; 482aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 483590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 484ab26458aSBarry Smith #endif 485ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 486ab26458aSBarry Smith row = im[i] - rstart; 487ab26458aSBarry Smith for (j=0; j<n; j++) { 48815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 48915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 490*f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 49115b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 492*f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 49315b57d14SSatish Balay } else { /* Here a copy is required */ 494ab26458aSBarry Smith if (roworiented) { 495ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 496ab26458aSBarry Smith } else { 497ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 498abef11f7SSatish Balay } 49947513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 50047513183SBarry Smith for (jj=0; jj<bs; jj++) { 50130793edcSSatish Balay *barray++ = *value++; 50247513183SBarry Smith } 50347513183SBarry Smith } 50430793edcSSatish Balay barray -=bs2; 50515b57d14SSatish Balay } 506abef11f7SSatish Balay 507abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 508abef11f7SSatish Balay col = in[j] - cstart; 50993fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 510ab26458aSBarry Smith } 5115ef9f2a5SBarry Smith else if (in[j] < 0) continue; 512aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 513590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 514ab26458aSBarry Smith #endif 515ab26458aSBarry Smith else { 516ab26458aSBarry Smith if (mat->was_assembled) { 517ab26458aSBarry Smith if (!baij->colmap) { 518ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 519ab26458aSBarry Smith } 520a5eb4965SSatish Balay 521aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 522aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 523fa46199cSSatish Balay { int data; 5240f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 52529bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 526fa46199cSSatish Balay } 52748e59246SSatish Balay #else 52829bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 529a5eb4965SSatish Balay #endif 53048e59246SSatish Balay #endif 531aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5320f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 533fa46199cSSatish Balay col = (col - 1)/bs; 53448e59246SSatish Balay #else 535a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 53648e59246SSatish Balay #endif 537ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 538ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 539ab26458aSBarry Smith col = in[j]; 540ab26458aSBarry Smith } 541ab26458aSBarry Smith } 542ab26458aSBarry Smith else col = in[j]; 54393fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 544ab26458aSBarry Smith } 545ab26458aSBarry Smith } 546d64ed03dSBarry Smith } else { 547ab26458aSBarry Smith if (!baij->donotstash) { 548ff2fd236SBarry Smith if (roworiented) { 5496fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 550ff2fd236SBarry Smith } else { 5516fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 552ff2fd236SBarry Smith } 553abef11f7SSatish Balay } 554ab26458aSBarry Smith } 555ab26458aSBarry Smith } 5563a40ed3dSBarry Smith PetscFunctionReturn(0); 557ab26458aSBarry Smith } 5586fa18ffdSBarry Smith 5590bdbc534SSatish Balay #define HASH_KEY 0.6180339887 560c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 5616fa18ffdSBarry Smith /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 562c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5634a2ae208SSatish Balay #undef __FUNCT__ 5644a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 565*f15d580aSBarry Smith int MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 5660bdbc534SSatish Balay { 5670bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 568273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 5690bdbc534SSatish Balay int ierr,i,j,row,col; 570273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 571c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 572c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 573329f5518SBarry Smith PetscReal tmp; 5743eda8832SBarry Smith MatScalar **HD = baij->hd,value; 575aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5764a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5774a15367fSSatish Balay #endif 5780bdbc534SSatish Balay 5790bdbc534SSatish Balay PetscFunctionBegin; 5800bdbc534SSatish Balay 5810bdbc534SSatish Balay for (i=0; i<m; i++) { 582aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 58329bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 584590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 5850bdbc534SSatish Balay #endif 5860bdbc534SSatish Balay row = im[i]; 587c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5880bdbc534SSatish Balay for (j=0; j<n; j++) { 5890bdbc534SSatish Balay col = in[j]; 5906fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 5910bdbc534SSatish Balay /* Look up into the Hash Table */ 592c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 593c2760754SSatish Balay h1 = HASH(size,key,tmp); 5940bdbc534SSatish Balay 595c2760754SSatish Balay 596c2760754SSatish Balay idx = h1; 597aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 598187ce0cbSSatish Balay insert_ct++; 599187ce0cbSSatish Balay total_ct++; 600187ce0cbSSatish Balay if (HT[idx] != key) { 601187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 602187ce0cbSSatish Balay if (idx == size) { 603187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 604187ce0cbSSatish Balay if (idx == h1) { 60529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 606187ce0cbSSatish Balay } 607187ce0cbSSatish Balay } 608187ce0cbSSatish Balay } 609187ce0cbSSatish Balay #else 610c2760754SSatish Balay if (HT[idx] != key) { 611c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 612c2760754SSatish Balay if (idx == size) { 613c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 614c2760754SSatish Balay if (idx == h1) { 61529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 616c2760754SSatish Balay } 617c2760754SSatish Balay } 618c2760754SSatish Balay } 619187ce0cbSSatish Balay #endif 620c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 621c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 622c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 6230bdbc534SSatish Balay } 6240bdbc534SSatish Balay } else { 6250bdbc534SSatish Balay if (!baij->donotstash) { 626ff2fd236SBarry Smith if (roworiented) { 6278798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 628ff2fd236SBarry Smith } else { 6298798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 634aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 635187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 636187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 637187ce0cbSSatish Balay #endif 6380bdbc534SSatish Balay PetscFunctionReturn(0); 6390bdbc534SSatish Balay } 6400bdbc534SSatish Balay 6414a2ae208SSatish Balay #undef __FUNCT__ 6424a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 643*f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 6440bdbc534SSatish Balay { 6450bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 646273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 6478798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 648273d9f13SBarry Smith int rstart=baij->rstart ; 649b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 650c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 651329f5518SBarry Smith PetscReal tmp; 6523eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 653*f15d580aSBarry Smith const MatScalar *v_t,*value; 654aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 6554a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 6564a15367fSSatish Balay #endif 6570bdbc534SSatish Balay 658d0a41580SSatish Balay PetscFunctionBegin; 659d0a41580SSatish Balay 6600bdbc534SSatish Balay if (roworiented) { 6610bdbc534SSatish Balay stepval = (n-1)*bs; 6620bdbc534SSatish Balay } else { 6630bdbc534SSatish Balay stepval = (m-1)*bs; 6640bdbc534SSatish Balay } 6650bdbc534SSatish Balay for (i=0; i<m; i++) { 666aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 667590ac198SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",im[i]); 668590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],baij->Mbs-1); 6690bdbc534SSatish Balay #endif 6700bdbc534SSatish Balay row = im[i]; 671187ce0cbSSatish Balay v_t = v + i*bs2; 672c2760754SSatish Balay if (row >= rstart && row < rend) { 6730bdbc534SSatish Balay for (j=0; j<n; j++) { 6740bdbc534SSatish Balay col = in[j]; 6750bdbc534SSatish Balay 6760bdbc534SSatish Balay /* Look up into the Hash Table */ 677c2760754SSatish Balay key = row*Nbs+col+1; 678c2760754SSatish Balay h1 = HASH(size,key,tmp); 6790bdbc534SSatish Balay 680c2760754SSatish Balay idx = h1; 681aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 682187ce0cbSSatish Balay total_ct++; 683187ce0cbSSatish Balay insert_ct++; 684187ce0cbSSatish Balay if (HT[idx] != key) { 685187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 686187ce0cbSSatish Balay if (idx == size) { 687187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 688187ce0cbSSatish Balay if (idx == h1) { 68929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 690187ce0cbSSatish Balay } 691187ce0cbSSatish Balay } 692187ce0cbSSatish Balay } 693187ce0cbSSatish Balay #else 694c2760754SSatish Balay if (HT[idx] != key) { 695c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 696c2760754SSatish Balay if (idx == size) { 697c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 698c2760754SSatish Balay if (idx == h1) { 69929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 700c2760754SSatish Balay } 701c2760754SSatish Balay } 702c2760754SSatish Balay } 703187ce0cbSSatish Balay #endif 704c2760754SSatish Balay baij_a = HD[idx]; 7050bdbc534SSatish Balay if (roworiented) { 706c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 707187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 708187ce0cbSSatish Balay value = v_t; 709187ce0cbSSatish Balay v_t += bs; 710fef45726SSatish Balay if (addv == ADD_VALUES) { 711c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 712c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 713fef45726SSatish Balay baij_a[jj] += *value++; 714b4cc0f5aSSatish Balay } 715b4cc0f5aSSatish Balay } 716fef45726SSatish Balay } else { 717c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 718c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 719fef45726SSatish Balay baij_a[jj] = *value++; 720fef45726SSatish Balay } 721fef45726SSatish Balay } 722fef45726SSatish Balay } 7230bdbc534SSatish Balay } else { 7240bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 725fef45726SSatish Balay if (addv == ADD_VALUES) { 726b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 7270bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 728fef45726SSatish Balay baij_a[jj] += *value++; 729fef45726SSatish Balay } 730fef45726SSatish Balay } 731fef45726SSatish Balay } else { 732fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 733fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 734fef45726SSatish Balay baij_a[jj] = *value++; 735fef45726SSatish Balay } 736b4cc0f5aSSatish Balay } 7370bdbc534SSatish Balay } 7380bdbc534SSatish Balay } 7390bdbc534SSatish Balay } 7400bdbc534SSatish Balay } else { 7410bdbc534SSatish Balay if (!baij->donotstash) { 7420bdbc534SSatish Balay if (roworiented) { 7438798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7440bdbc534SSatish Balay } else { 7458798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7460bdbc534SSatish Balay } 7470bdbc534SSatish Balay } 7480bdbc534SSatish Balay } 7490bdbc534SSatish Balay } 750aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 751187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 752187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 753187ce0cbSSatish Balay #endif 7540bdbc534SSatish Balay PetscFunctionReturn(0); 7550bdbc534SSatish Balay } 756133cdb44SSatish Balay 7574a2ae208SSatish Balay #undef __FUNCT__ 7584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 759*f15d580aSBarry Smith int MatGetValues_MPIBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 760d6de1c52SSatish Balay { 761d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 762d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 76348e59246SSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 764d6de1c52SSatish Balay 765133cdb44SSatish Balay PetscFunctionBegin; 766d6de1c52SSatish Balay for (i=0; i<m; i++) { 767590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 768590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 769d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 770d6de1c52SSatish Balay row = idxm[i] - bsrstart; 771d6de1c52SSatish Balay for (j=0; j<n; j++) { 772590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %d",idxn[j]); 773590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 774d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 775d6de1c52SSatish Balay col = idxn[j] - bscstart; 77698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 777d64ed03dSBarry Smith } else { 778905e6a2fSBarry Smith if (!baij->colmap) { 779905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 780905e6a2fSBarry Smith } 781aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7820f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 783fa46199cSSatish Balay data --; 78448e59246SSatish Balay #else 78548e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 78648e59246SSatish Balay #endif 78748e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 788d9d09a02SSatish Balay else { 78948e59246SSatish Balay col = data + idxn[j]%bs; 79098dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 791d6de1c52SSatish Balay } 792d6de1c52SSatish Balay } 793d6de1c52SSatish Balay } 794d64ed03dSBarry Smith } else { 79529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 796d6de1c52SSatish Balay } 797d6de1c52SSatish Balay } 7983a40ed3dSBarry Smith PetscFunctionReturn(0); 799d6de1c52SSatish Balay } 800d6de1c52SSatish Balay 8014a2ae208SSatish Balay #undef __FUNCT__ 8024a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 803064f8208SBarry Smith int MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 804d6de1c52SSatish Balay { 805d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 806d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 807acdf5bf4SSatish Balay int ierr,i,bs2=baij->bs2; 808329f5518SBarry Smith PetscReal sum = 0.0; 8093eda8832SBarry Smith MatScalar *v; 810d6de1c52SSatish Balay 811d64ed03dSBarry Smith PetscFunctionBegin; 812d6de1c52SSatish Balay if (baij->size == 1) { 813064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 814d6de1c52SSatish Balay } else { 815d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 816d6de1c52SSatish Balay v = amat->a; 817d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++) { 818aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 819329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 820d6de1c52SSatish Balay #else 821d6de1c52SSatish Balay sum += (*v)*(*v); v++; 822d6de1c52SSatish Balay #endif 823d6de1c52SSatish Balay } 824d6de1c52SSatish Balay v = bmat->a; 825d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++) { 826aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 827329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 828d6de1c52SSatish Balay #else 829d6de1c52SSatish Balay sum += (*v)*(*v); v++; 830d6de1c52SSatish Balay #endif 831d6de1c52SSatish Balay } 832064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 833064f8208SBarry Smith *nrm = sqrt(*nrm); 834d64ed03dSBarry Smith } else { 83529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 836d6de1c52SSatish Balay } 837d64ed03dSBarry Smith } 8383a40ed3dSBarry Smith PetscFunctionReturn(0); 839d6de1c52SSatish Balay } 84057b952d6SSatish Balay 841bd7f49f5SSatish Balay 842fef45726SSatish Balay /* 843fef45726SSatish Balay Creates the hash table, and sets the table 844fef45726SSatish Balay This table is created only once. 845fef45726SSatish Balay If new entried need to be added to the matrix 846fef45726SSatish Balay then the hash table has to be destroyed and 847fef45726SSatish Balay recreated. 848fef45726SSatish Balay */ 8494a2ae208SSatish Balay #undef __FUNCT__ 8504a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 851329f5518SBarry Smith int MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 852596b8d2eSBarry Smith { 853596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 854596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 855596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 8560bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 857549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 858187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 859fef45726SSatish Balay int *HT,key; 8603eda8832SBarry Smith MatScalar **HD; 861329f5518SBarry Smith PetscReal tmp; 862aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 8634a15367fSSatish Balay int ct=0,max=0; 8644a15367fSSatish Balay #endif 865fef45726SSatish Balay 866d64ed03dSBarry Smith PetscFunctionBegin; 8670bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 8680bdbc534SSatish Balay size = baij->ht_size; 869fef45726SSatish Balay 8700bdbc534SSatish Balay if (baij->ht) { 8710bdbc534SSatish Balay PetscFunctionReturn(0); 872596b8d2eSBarry Smith } 8730bdbc534SSatish Balay 874fef45726SSatish Balay /* Allocate Memory for Hash Table */ 875b0a32e0cSBarry Smith ierr = PetscMalloc((size)*(sizeof(int)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 876b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 877b9e4cc15SSatish Balay HD = baij->hd; 878a07cd24cSSatish Balay HT = baij->ht; 879b9e4cc15SSatish Balay 880b9e4cc15SSatish Balay 88187828ca2SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(PetscScalar*)));CHKERRQ(ierr); 8820bdbc534SSatish Balay 883596b8d2eSBarry Smith 884596b8d2eSBarry Smith /* Loop Over A */ 8850bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 886596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8870bdbc534SSatish Balay row = i+rstart; 8880bdbc534SSatish Balay col = aj[j]+cstart; 889596b8d2eSBarry Smith 890187ce0cbSSatish Balay key = row*Nbs + col + 1; 891c2760754SSatish Balay h1 = HASH(size,key,tmp); 8920bdbc534SSatish Balay for (k=0; k<size; k++){ 8930bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8940bdbc534SSatish Balay HT[(h1+k)%size] = key; 8950bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 896596b8d2eSBarry Smith break; 897aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 898187ce0cbSSatish Balay } else { 899187ce0cbSSatish Balay ct++; 900187ce0cbSSatish Balay #endif 901596b8d2eSBarry Smith } 902187ce0cbSSatish Balay } 903aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 904187ce0cbSSatish Balay if (k> max) max = k; 905187ce0cbSSatish Balay #endif 906596b8d2eSBarry Smith } 907596b8d2eSBarry Smith } 908596b8d2eSBarry Smith /* Loop Over B */ 9090bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 910596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9110bdbc534SSatish Balay row = i+rstart; 9120bdbc534SSatish Balay col = garray[bj[j]]; 913187ce0cbSSatish Balay key = row*Nbs + col + 1; 914c2760754SSatish Balay h1 = HASH(size,key,tmp); 9150bdbc534SSatish Balay for (k=0; k<size; k++){ 9160bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 9170bdbc534SSatish Balay HT[(h1+k)%size] = key; 9180bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 919596b8d2eSBarry Smith break; 920aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 921187ce0cbSSatish Balay } else { 922187ce0cbSSatish Balay ct++; 923187ce0cbSSatish Balay #endif 924596b8d2eSBarry Smith } 925187ce0cbSSatish Balay } 926aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 927187ce0cbSSatish Balay if (k> max) max = k; 928187ce0cbSSatish Balay #endif 929596b8d2eSBarry Smith } 930596b8d2eSBarry Smith } 931596b8d2eSBarry Smith 932596b8d2eSBarry Smith /* Print Summary */ 933aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 934c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 935596b8d2eSBarry Smith if (HT[i]) {j++;} 936c38d4ed2SBarry Smith } 937b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(j== 0)? 0.0:((PetscReal)(ct+j))/j,max); 938187ce0cbSSatish Balay #endif 9393a40ed3dSBarry Smith PetscFunctionReturn(0); 940596b8d2eSBarry Smith } 94157b952d6SSatish Balay 9424a2ae208SSatish Balay #undef __FUNCT__ 9434a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 944bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 945bbb85fb3SSatish Balay { 946bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 947ff2fd236SBarry Smith int ierr,nstash,reallocs; 948bbb85fb3SSatish Balay InsertMode addv; 949bbb85fb3SSatish Balay 950bbb85fb3SSatish Balay PetscFunctionBegin; 951bbb85fb3SSatish Balay if (baij->donotstash) { 952bbb85fb3SSatish Balay PetscFunctionReturn(0); 953bbb85fb3SSatish Balay } 954bbb85fb3SSatish Balay 955bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 956bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 957bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 95829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 959bbb85fb3SSatish Balay } 960bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 961bbb85fb3SSatish Balay 9628798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 9638798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 9648798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 965b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 96646680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 967b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 968bbb85fb3SSatish Balay PetscFunctionReturn(0); 969bbb85fb3SSatish Balay } 970bbb85fb3SSatish Balay 971a56a16c8SHong Zhang EXTERN int MatUseDSCPACK_MPIBAIJ(Mat); 9724a2ae208SSatish Balay #undef __FUNCT__ 9734a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 974bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 975bbb85fb3SSatish Balay { 976bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 977a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 978a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 9797c922b88SBarry Smith int *row,*col,other_disassembled; 9807c922b88SBarry Smith PetscTruth r1,r2,r3; 9813eda8832SBarry Smith MatScalar *val; 982bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 983a56a16c8SHong Zhang #if defined(PETSC_HAVE_DSCPACK) 984a56a16c8SHong Zhang PetscTruth flag; 985a56a16c8SHong Zhang #endif 986bbb85fb3SSatish Balay 987bbb85fb3SSatish Balay PetscFunctionBegin; 988bbb85fb3SSatish Balay if (!baij->donotstash) { 989a2d1c673SSatish Balay while (1) { 9908798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 991a2d1c673SSatish Balay if (!flg) break; 992a2d1c673SSatish Balay 993bbb85fb3SSatish Balay for (i=0; i<n;) { 994bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 995bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 996bbb85fb3SSatish Balay if (j < n) ncols = j-i; 997bbb85fb3SSatish Balay else ncols = n-i; 998bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 99993fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 1000bbb85fb3SSatish Balay i = j; 1001bbb85fb3SSatish Balay } 1002bbb85fb3SSatish Balay } 10038798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 1004a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1005a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1006a2d1c673SSatish Balay restore the original flags */ 1007a2d1c673SSatish Balay r1 = baij->roworiented; 1008a2d1c673SSatish Balay r2 = a->roworiented; 1009a2d1c673SSatish Balay r3 = b->roworiented; 10107c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10117c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10127c922b88SBarry Smith b->roworiented = PETSC_FALSE; 1013a2d1c673SSatish Balay while (1) { 10148798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1015a2d1c673SSatish Balay if (!flg) break; 1016a2d1c673SSatish Balay 1017a2d1c673SSatish Balay for (i=0; i<n;) { 1018a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1019a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1020a2d1c673SSatish Balay if (j < n) ncols = j-i; 1021a2d1c673SSatish Balay else ncols = n-i; 102293fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1023a2d1c673SSatish Balay i = j; 1024a2d1c673SSatish Balay } 1025a2d1c673SSatish Balay } 10268798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1027a2d1c673SSatish Balay baij->roworiented = r1; 1028a2d1c673SSatish Balay a->roworiented = r2; 1029a2d1c673SSatish Balay b->roworiented = r3; 1030bbb85fb3SSatish Balay } 1031bbb85fb3SSatish Balay 1032bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1033bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1034bbb85fb3SSatish Balay 1035bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1036bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1037bbb85fb3SSatish Balay /* 1038bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1039bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1040bbb85fb3SSatish Balay */ 1041bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1042bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1043bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1044bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1045bbb85fb3SSatish Balay } 1046bbb85fb3SSatish Balay } 1047bbb85fb3SSatish Balay 1048bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1049bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1050bbb85fb3SSatish Balay } 1051bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1052bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1053bbb85fb3SSatish Balay 1054aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 1055bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1056f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 1057bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1058bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1059bbb85fb3SSatish Balay } 1060bbb85fb3SSatish Balay #endif 1061bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1062bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1063bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1064bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1065bbb85fb3SSatish Balay } 1066bbb85fb3SSatish Balay 1067606d414cSSatish Balay if (baij->rowvalues) { 1068606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1069606d414cSSatish Balay baij->rowvalues = 0; 1070606d414cSSatish Balay } 1071a56a16c8SHong Zhang #if defined(PETSC_HAVE_DSCPACK) 10722c535e4dSHong Zhang ierr = PetscOptionsHasName(mat->prefix,"-mat_baij_dscpack",&flag);CHKERRQ(ierr); 1073a56a16c8SHong Zhang if (flag) { ierr = MatUseDSCPACK_MPIBAIJ(mat);CHKERRQ(ierr); } 1074a56a16c8SHong Zhang #endif 1075bbb85fb3SSatish Balay PetscFunctionReturn(0); 1076bbb85fb3SSatish Balay } 107757b952d6SSatish Balay 107804929863SHong Zhang extern int MatMPIBAIJFactorInfo_DSCPACK(Mat,PetscViewer); 107904929863SHong Zhang 10804a2ae208SSatish Balay #undef __FUNCT__ 10814a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 1082b0a32e0cSBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 108357b952d6SSatish Balay { 108457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1085fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 10866831982aSBarry Smith PetscTruth isascii,isdraw; 1087b0a32e0cSBarry Smith PetscViewer sviewer; 1088f3ef73ceSBarry Smith PetscViewerFormat format; 108957b952d6SSatish Balay 1090d64ed03dSBarry Smith PetscFunctionBegin; 1091f81bd7ccSHong Zhang /* printf(" MatView_MPIBAIJ_ASCIIorDraworSocket is called ...\n"); */ 1092b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1093fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 10940f5bd95cSBarry Smith if (isascii) { 1095b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1096456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10974e220ebcSLois Curfman McInnes MatInfo info; 1098d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1099d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 1100b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 1101273d9f13SBarry Smith rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 11026831982aSBarry Smith baij->bs,(int)info.memory);CHKERRQ(ierr); 1103d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1104b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1105d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1106b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1107b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 110857b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 11093a40ed3dSBarry Smith PetscFunctionReturn(0); 1110fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1111b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 11123a40ed3dSBarry Smith PetscFunctionReturn(0); 111304929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 111404929863SHong Zhang #if defined(PETSC_HAVE_DSCPACK) && !defined(PETSC_USE_SINGLE) && !defined(PETSC_USE_COMPLEX) 111504929863SHong Zhang ierr = MatMPIBAIJFactorInfo_DSCPACK(mat,viewer);CHKERRQ(ierr); 111604929863SHong Zhang #endif 111704929863SHong Zhang PetscFunctionReturn(0); 111857b952d6SSatish Balay } 111957b952d6SSatish Balay } 112057b952d6SSatish Balay 11210f5bd95cSBarry Smith if (isdraw) { 1122b0a32e0cSBarry Smith PetscDraw draw; 112357b952d6SSatish Balay PetscTruth isnull; 1124b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1125b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 112657b952d6SSatish Balay } 112757b952d6SSatish Balay 112857b952d6SSatish Balay if (size == 1) { 1129873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 113057b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1131d64ed03dSBarry Smith } else { 113257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 113357b952d6SSatish Balay Mat A; 113457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1135273d9f13SBarry Smith int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11363eda8832SBarry Smith MatScalar *a; 113757b952d6SSatish Balay 113857b952d6SSatish Balay if (!rank) { 113955843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 1140d64ed03dSBarry Smith } else { 114155843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 114257b952d6SSatish Balay } 1143b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 114457b952d6SSatish Balay 114557b952d6SSatish Balay /* copy over the A part */ 114657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 114757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 114882502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 114957b952d6SSatish Balay 115057b952d6SSatish Balay for (i=0; i<mbs; i++) { 115157b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 115257b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 115357b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 115457b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 115557b952d6SSatish Balay for (k=0; k<bs; k++) { 115693fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1157cee3aa6bSSatish Balay col++; a += bs; 115857b952d6SSatish Balay } 115957b952d6SSatish Balay } 116057b952d6SSatish Balay } 116157b952d6SSatish Balay /* copy over the B part */ 116257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 116357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 116457b952d6SSatish Balay for (i=0; i<mbs; i++) { 116557b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 116657b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 116757b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 116857b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 116957b952d6SSatish Balay for (k=0; k<bs; k++) { 117093fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1171cee3aa6bSSatish Balay col++; a += bs; 117257b952d6SSatish Balay } 117357b952d6SSatish Balay } 117457b952d6SSatish Balay } 1175606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11766d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11776d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 117855843e3eSBarry Smith /* 117955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1180b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 118155843e3eSBarry Smith */ 1182b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1183f14a1c24SBarry Smith if (!rank) { 1184e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 11856831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 118657b952d6SSatish Balay } 1187b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 118857b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 118957b952d6SSatish Balay } 11903a40ed3dSBarry Smith PetscFunctionReturn(0); 119157b952d6SSatish Balay } 119257b952d6SSatish Balay 11934a2ae208SSatish Balay #undef __FUNCT__ 11944a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1195b0a32e0cSBarry Smith int MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 119657b952d6SSatish Balay { 119757b952d6SSatish Balay int ierr; 11986831982aSBarry Smith PetscTruth isascii,isdraw,issocket,isbinary; 119957b952d6SSatish Balay 1200d64ed03dSBarry Smith PetscFunctionBegin; 1201b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1202fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1203b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1204fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 12050f5bd95cSBarry Smith if (isascii || isdraw || issocket || isbinary) { 12067b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 12075cd90555SBarry Smith } else { 120829bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 120957b952d6SSatish Balay } 12103a40ed3dSBarry Smith PetscFunctionReturn(0); 121157b952d6SSatish Balay } 121257b952d6SSatish Balay 12134a2ae208SSatish Balay #undef __FUNCT__ 12144a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1215e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 121679bdfe76SSatish Balay { 121779bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 121879bdfe76SSatish Balay int ierr; 121979bdfe76SSatish Balay 1220d64ed03dSBarry Smith PetscFunctionBegin; 1221aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1222b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 122379bdfe76SSatish Balay #endif 12248798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12258798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 1226606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 122779bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 122879bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1229aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12300f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 123148e59246SSatish Balay #else 1232606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 123348e59246SSatish Balay #endif 1234606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1235606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1236606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1237606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1238606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1239606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 12406fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 12416fa18ffdSBarry Smith if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 12426fa18ffdSBarry Smith #endif 1243606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 12443a40ed3dSBarry Smith PetscFunctionReturn(0); 124579bdfe76SSatish Balay } 124679bdfe76SSatish Balay 12474a2ae208SSatish Balay #undef __FUNCT__ 12484a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1249ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1250cee3aa6bSSatish Balay { 1251cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 125247b4a8eaSLois Curfman McInnes int ierr,nt; 1253cee3aa6bSSatish Balay 1254d64ed03dSBarry Smith PetscFunctionBegin; 1255e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1256273d9f13SBarry Smith if (nt != A->n) { 125729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 125847b4a8eaSLois Curfman McInnes } 1259e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1260273d9f13SBarry Smith if (nt != A->m) { 126129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 126247b4a8eaSLois Curfman McInnes } 126343a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1264f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 126543a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1266f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 126743a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 12683a40ed3dSBarry Smith PetscFunctionReturn(0); 1269cee3aa6bSSatish Balay } 1270cee3aa6bSSatish Balay 12714a2ae208SSatish Balay #undef __FUNCT__ 12724a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1273ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1274cee3aa6bSSatish Balay { 1275cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1276cee3aa6bSSatish Balay int ierr; 1277d64ed03dSBarry Smith 1278d64ed03dSBarry Smith PetscFunctionBegin; 127943a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1280f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 128143a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1282f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12833a40ed3dSBarry Smith PetscFunctionReturn(0); 1284cee3aa6bSSatish Balay } 1285cee3aa6bSSatish Balay 12864a2ae208SSatish Balay #undef __FUNCT__ 12874a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 12887c922b88SBarry Smith int MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1289cee3aa6bSSatish Balay { 1290cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1291cee3aa6bSSatish Balay int ierr; 1292cee3aa6bSSatish Balay 1293d64ed03dSBarry Smith PetscFunctionBegin; 1294cee3aa6bSSatish Balay /* do nondiagonal part */ 12957c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1296cee3aa6bSSatish Balay /* send it on its way */ 1297537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1298cee3aa6bSSatish Balay /* do local part */ 12997c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1300cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1301cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1302cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1303639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13043a40ed3dSBarry Smith PetscFunctionReturn(0); 1305cee3aa6bSSatish Balay } 1306cee3aa6bSSatish Balay 13074a2ae208SSatish Balay #undef __FUNCT__ 13084a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 13097c922b88SBarry Smith int MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1310cee3aa6bSSatish Balay { 1311cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1312cee3aa6bSSatish Balay int ierr; 1313cee3aa6bSSatish Balay 1314d64ed03dSBarry Smith PetscFunctionBegin; 1315cee3aa6bSSatish Balay /* do nondiagonal part */ 13167c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1317cee3aa6bSSatish Balay /* send it on its way */ 1318537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1319cee3aa6bSSatish Balay /* do local part */ 13207c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1321cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1322cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1323cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1324537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13253a40ed3dSBarry Smith PetscFunctionReturn(0); 1326cee3aa6bSSatish Balay } 1327cee3aa6bSSatish Balay 1328cee3aa6bSSatish Balay /* 1329cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1330cee3aa6bSSatish Balay diagonal block 1331cee3aa6bSSatish Balay */ 13324a2ae208SSatish Balay #undef __FUNCT__ 13334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1334ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1335cee3aa6bSSatish Balay { 1336cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 13373a40ed3dSBarry Smith int ierr; 1338d64ed03dSBarry Smith 1339d64ed03dSBarry Smith PetscFunctionBegin; 1340273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13413a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13423a40ed3dSBarry Smith PetscFunctionReturn(0); 1343cee3aa6bSSatish Balay } 1344cee3aa6bSSatish Balay 13454a2ae208SSatish Balay #undef __FUNCT__ 13464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 134787828ca2SBarry Smith int MatScale_MPIBAIJ(PetscScalar *aa,Mat A) 1348cee3aa6bSSatish Balay { 1349cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1350cee3aa6bSSatish Balay int ierr; 1351d64ed03dSBarry Smith 1352d64ed03dSBarry Smith PetscFunctionBegin; 1353cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1354cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 13553a40ed3dSBarry Smith PetscFunctionReturn(0); 1356cee3aa6bSSatish Balay } 1357026e39d0SSatish Balay 13584a2ae208SSatish Balay #undef __FUNCT__ 13594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 136087828ca2SBarry Smith int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1361acdf5bf4SSatish Balay { 1362acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 136387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1364acdf5bf4SSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1365d9d09a02SSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1366d9d09a02SSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1367acdf5bf4SSatish Balay 1368d64ed03dSBarry Smith PetscFunctionBegin; 136929bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1370acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1371acdf5bf4SSatish Balay 1372acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1373acdf5bf4SSatish Balay /* 1374acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1375acdf5bf4SSatish Balay */ 1376acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1377bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1378bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1379acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1380acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1381acdf5bf4SSatish Balay } 138287828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1383acdf5bf4SSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay 138629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1387d9d09a02SSatish Balay lrow = row - brstart; 1388acdf5bf4SSatish Balay 1389acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1390acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1391acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1392f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1393f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1394acdf5bf4SSatish Balay nztot = nzA + nzB; 1395acdf5bf4SSatish Balay 1396acdf5bf4SSatish Balay cmap = mat->garray; 1397acdf5bf4SSatish Balay if (v || idx) { 1398acdf5bf4SSatish Balay if (nztot) { 1399acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1400acdf5bf4SSatish Balay int imark = -1; 1401acdf5bf4SSatish Balay if (v) { 1402acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1403acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1404d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1405acdf5bf4SSatish Balay else break; 1406acdf5bf4SSatish Balay } 1407acdf5bf4SSatish Balay imark = i; 1408acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1409acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1410acdf5bf4SSatish Balay } 1411acdf5bf4SSatish Balay if (idx) { 1412acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1413acdf5bf4SSatish Balay if (imark > -1) { 1414acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1415bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1416acdf5bf4SSatish Balay } 1417acdf5bf4SSatish Balay } else { 1418acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1419d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1420d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1421acdf5bf4SSatish Balay else break; 1422acdf5bf4SSatish Balay } 1423acdf5bf4SSatish Balay imark = i; 1424acdf5bf4SSatish Balay } 1425d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1426d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1427acdf5bf4SSatish Balay } 1428d64ed03dSBarry Smith } else { 1429d212a18eSSatish Balay if (idx) *idx = 0; 1430d212a18eSSatish Balay if (v) *v = 0; 1431d212a18eSSatish Balay } 1432acdf5bf4SSatish Balay } 1433acdf5bf4SSatish Balay *nz = nztot; 1434f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1435f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14363a40ed3dSBarry Smith PetscFunctionReturn(0); 1437acdf5bf4SSatish Balay } 1438acdf5bf4SSatish Balay 14394a2ae208SSatish Balay #undef __FUNCT__ 14404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 144187828ca2SBarry Smith int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1442acdf5bf4SSatish Balay { 1443acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1444d64ed03dSBarry Smith 1445d64ed03dSBarry Smith PetscFunctionBegin; 1446acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 144729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1448acdf5bf4SSatish Balay } 1449acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14503a40ed3dSBarry Smith PetscFunctionReturn(0); 1451acdf5bf4SSatish Balay } 1452acdf5bf4SSatish Balay 14534a2ae208SSatish Balay #undef __FUNCT__ 14544a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIBAIJ" 1455ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 14565a838052SSatish Balay { 14575a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1458d64ed03dSBarry Smith 1459d64ed03dSBarry Smith PetscFunctionBegin; 14605a838052SSatish Balay *bs = baij->bs; 14613a40ed3dSBarry Smith PetscFunctionReturn(0); 14625a838052SSatish Balay } 14635a838052SSatish Balay 14644a2ae208SSatish Balay #undef __FUNCT__ 14654a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1466ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 146758667388SSatish Balay { 146858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 146958667388SSatish Balay int ierr; 1470d64ed03dSBarry Smith 1471d64ed03dSBarry Smith PetscFunctionBegin; 147258667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 147358667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14743a40ed3dSBarry Smith PetscFunctionReturn(0); 147558667388SSatish Balay } 14760ac07820SSatish Balay 14774a2ae208SSatish Balay #undef __FUNCT__ 14784a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1479ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14800ac07820SSatish Balay { 14814e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14824e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14837d57db60SLois Curfman McInnes int ierr; 1484329f5518SBarry Smith PetscReal isend[5],irecv[5]; 14850ac07820SSatish Balay 1486d64ed03dSBarry Smith PetscFunctionBegin; 1487f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 14884e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 14890e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1490de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 14914e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 14920e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1493de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 14940ac07820SSatish Balay if (flag == MAT_LOCAL) { 14954e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14964e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14974e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14984e220ebcSLois Curfman McInnes info->memory = isend[3]; 14994e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15000ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1501d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 15024e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15034e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15044e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15054e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15064e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15070ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1508d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 15094e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15104e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15114e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15124e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15134e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1514d41123aaSBarry Smith } else { 151529bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 15160ac07820SSatish Balay } 1517f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1518f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1519f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1520f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 15214e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15224e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15234e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15243a40ed3dSBarry Smith PetscFunctionReturn(0); 15250ac07820SSatish Balay } 15260ac07820SSatish Balay 15274a2ae208SSatish Balay #undef __FUNCT__ 15284a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1529ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 153058667388SSatish Balay { 153158667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 153298305bb5SBarry Smith int ierr; 153358667388SSatish Balay 1534d64ed03dSBarry Smith PetscFunctionBegin; 153512c028f9SKris Buschelman switch (op) { 153612c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 153712c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 153812c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 153912c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 154012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 154112c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 154212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 154398305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 154498305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 154512c028f9SKris Buschelman break; 154612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15477c922b88SBarry Smith a->roworiented = PETSC_TRUE; 154898305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 154998305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 155012c028f9SKris Buschelman break; 155112c028f9SKris Buschelman case MAT_ROWS_SORTED: 155212c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 155312c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1554b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 155512c028f9SKris Buschelman break; 155612c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 15577c922b88SBarry Smith a->roworiented = PETSC_FALSE; 155898305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 155998305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 156012c028f9SKris Buschelman break; 156112c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15627c922b88SBarry Smith a->donotstash = PETSC_TRUE; 156312c028f9SKris Buschelman break; 156412c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 156529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 156612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15677c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 156812c028f9SKris Buschelman break; 156912c028f9SKris Buschelman default: 157029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1571d64ed03dSBarry Smith } 15723a40ed3dSBarry Smith PetscFunctionReturn(0); 157358667388SSatish Balay } 157458667388SSatish Balay 15754a2ae208SSatish Balay #undef __FUNCT__ 15764a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1577ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 15780ac07820SSatish Balay { 15790ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15800ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15810ac07820SSatish Balay Mat B; 1582273d9f13SBarry Smith int ierr,M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col; 15830ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 15843eda8832SBarry Smith MatScalar *a; 15850ac07820SSatish Balay 1586d64ed03dSBarry Smith PetscFunctionBegin; 158729bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1588273d9f13SBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 15890ac07820SSatish Balay 15900ac07820SSatish Balay /* copy over the A part */ 15910ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15920ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 159382502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 15940ac07820SSatish Balay 15950ac07820SSatish Balay for (i=0; i<mbs; i++) { 15960ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15970ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15980ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15990ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 16000ac07820SSatish Balay for (k=0; k<bs; k++) { 160193fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16020ac07820SSatish Balay col++; a += bs; 16030ac07820SSatish Balay } 16040ac07820SSatish Balay } 16050ac07820SSatish Balay } 16060ac07820SSatish Balay /* copy over the B part */ 16070ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16080ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16090ac07820SSatish Balay for (i=0; i<mbs; i++) { 16100ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16110ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16120ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16130ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16140ac07820SSatish Balay for (k=0; k<bs; k++) { 161593fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16160ac07820SSatish Balay col++; a += bs; 16170ac07820SSatish Balay } 16180ac07820SSatish Balay } 16190ac07820SSatish Balay } 1620606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16210ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16220ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16230ac07820SSatish Balay 16247c922b88SBarry Smith if (matout) { 16250ac07820SSatish Balay *matout = B; 16260ac07820SSatish Balay } else { 1627273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16280ac07820SSatish Balay } 16293a40ed3dSBarry Smith PetscFunctionReturn(0); 16300ac07820SSatish Balay } 16310e95ebc0SSatish Balay 16324a2ae208SSatish Balay #undef __FUNCT__ 16334a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 163436c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16350e95ebc0SSatish Balay { 163636c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 163736c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 16380e95ebc0SSatish Balay int ierr,s1,s2,s3; 16390e95ebc0SSatish Balay 1640d64ed03dSBarry Smith PetscFunctionBegin; 164136c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 164236c4a09eSSatish Balay if (rr) { 164336c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 164429bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 164536c4a09eSSatish Balay /* Overlap communication with computation. */ 164636c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 164736c4a09eSSatish Balay } 16480e95ebc0SSatish Balay if (ll) { 16490e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 165029bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1651a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16520e95ebc0SSatish Balay } 165336c4a09eSSatish Balay /* scale the diagonal block */ 165436c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 165536c4a09eSSatish Balay 165636c4a09eSSatish Balay if (rr) { 165736c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 165836c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1659a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 166036c4a09eSSatish Balay } 166136c4a09eSSatish Balay 16623a40ed3dSBarry Smith PetscFunctionReturn(0); 16630e95ebc0SSatish Balay } 16640e95ebc0SSatish Balay 16654a2ae208SSatish Balay #undef __FUNCT__ 16664a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 166787828ca2SBarry Smith int MatZeroRows_MPIBAIJ(Mat A,IS is,PetscScalar *diag) 16680ac07820SSatish Balay { 16690ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16700ac07820SSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1671c1dc657dSBarry Smith int *nprocs,j,idx,nsends,row; 16720ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16730ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1674a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16750ac07820SSatish Balay MPI_Comm comm = A->comm; 16760ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16770ac07820SSatish Balay MPI_Status recv_status,*send_status; 16780ac07820SSatish Balay IS istmp; 167935d8aa7fSBarry Smith PetscTruth found; 16800ac07820SSatish Balay 1681d64ed03dSBarry Smith PetscFunctionBegin; 1682f14a1c24SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 16830ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16840ac07820SSatish Balay 16850ac07820SSatish Balay /* first count number of contributors to each processor */ 168682502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1687549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1688b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 16890ac07820SSatish Balay for (i=0; i<N; i++) { 16900ac07820SSatish Balay idx = rows[i]; 169135d8aa7fSBarry Smith found = PETSC_FALSE; 16920ac07820SSatish Balay for (j=0; j<size; j++) { 16930ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1694c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 16950ac07820SSatish Balay } 16960ac07820SSatish Balay } 169729bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 16980ac07820SSatish Balay } 1699c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 17000ac07820SSatish Balay 17010ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1702c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 17030ac07820SSatish Balay 17040ac07820SSatish Balay /* post receives: */ 1705b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1706b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17070ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1708ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17090ac07820SSatish Balay } 17100ac07820SSatish Balay 17110ac07820SSatish Balay /* do sends: 17120ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17130ac07820SSatish Balay the ith processor 17140ac07820SSatish Balay */ 1715b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1716b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1717b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 17180ac07820SSatish Balay starts[0] = 0; 1719c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17200ac07820SSatish Balay for (i=0; i<N; i++) { 17210ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17220ac07820SSatish Balay } 17236831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 17240ac07820SSatish Balay 17250ac07820SSatish Balay starts[0] = 0; 1726c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17270ac07820SSatish Balay count = 0; 17280ac07820SSatish Balay for (i=0; i<size; i++) { 1729c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1730c1dc657dSBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17310ac07820SSatish Balay } 17320ac07820SSatish Balay } 1733606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17340ac07820SSatish Balay 17350ac07820SSatish Balay base = owners[rank]*bs; 17360ac07820SSatish Balay 17370ac07820SSatish Balay /* wait on receives */ 1738b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 17390ac07820SSatish Balay source = lens + nrecvs; 17400ac07820SSatish Balay count = nrecvs; slen = 0; 17410ac07820SSatish Balay while (count) { 1742ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17430ac07820SSatish Balay /* unpack receives into our local space */ 1744ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 17450ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17460ac07820SSatish Balay lens[imdex] = n; 17470ac07820SSatish Balay slen += n; 17480ac07820SSatish Balay count--; 17490ac07820SSatish Balay } 1750606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17510ac07820SSatish Balay 17520ac07820SSatish Balay /* move the data into the send scatter */ 1753b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 17540ac07820SSatish Balay count = 0; 17550ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17560ac07820SSatish Balay values = rvalues + i*nmax; 17570ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17580ac07820SSatish Balay lrows[count++] = values[j] - base; 17590ac07820SSatish Balay } 17600ac07820SSatish Balay } 1761606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1762606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1763606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1764606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 17650ac07820SSatish Balay 17660ac07820SSatish Balay /* actually zap the local rows */ 1767029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1768b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1769a07cd24cSSatish Balay 177072dacd9aSBarry Smith /* 177172dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 177272dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 177372dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 177472dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 177572dacd9aSBarry Smith 177672dacd9aSBarry Smith Contributed by: Mathew Knepley 177772dacd9aSBarry Smith */ 17789c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17796fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 17809c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17816fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 17829c957beeSSatish Balay } else if (diag) { 17836fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1784fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 178529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1786fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17876525c446SSatish Balay } 1788a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1789a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 17903f11ea53SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1791a07cd24cSSatish Balay } 1792a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1793a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17949c957beeSSatish Balay } else { 17956fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1796a07cd24cSSatish Balay } 17979c957beeSSatish Balay 17989c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1799606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1800a07cd24cSSatish Balay 18010ac07820SSatish Balay /* wait on sends */ 18020ac07820SSatish Balay if (nsends) { 180382502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1804ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1805606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18060ac07820SSatish Balay } 1807606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1808606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18090ac07820SSatish Balay 18103a40ed3dSBarry Smith PetscFunctionReturn(0); 18110ac07820SSatish Balay } 181272dacd9aSBarry Smith 18134a2ae208SSatish Balay #undef __FUNCT__ 18144a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ" 1815ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1816ba4ca20aSSatish Balay { 1817ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181825fdafccSSatish Balay MPI_Comm comm = A->comm; 1819133cdb44SSatish Balay static int called = 0; 18203a40ed3dSBarry Smith int ierr; 1821ba4ca20aSSatish Balay 1822d64ed03dSBarry Smith PetscFunctionBegin; 18233a40ed3dSBarry Smith if (!a->rank) { 18243a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 182525fdafccSSatish Balay } 182625fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1827d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1828d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 18293a40ed3dSBarry Smith PetscFunctionReturn(0); 1830ba4ca20aSSatish Balay } 18310ac07820SSatish Balay 18324a2ae208SSatish Balay #undef __FUNCT__ 18334a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1834ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1835bb5a7306SBarry Smith { 1836bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1837bb5a7306SBarry Smith int ierr; 1838d64ed03dSBarry Smith 1839d64ed03dSBarry Smith PetscFunctionBegin; 1840bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18413a40ed3dSBarry Smith PetscFunctionReturn(0); 1842bb5a7306SBarry Smith } 1843bb5a7306SBarry Smith 18442e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18450ac07820SSatish Balay 18464a2ae208SSatish Balay #undef __FUNCT__ 18474a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 18487fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18497fc3c18eSBarry Smith { 18507fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18517fc3c18eSBarry Smith Mat a,b,c,d; 18527fc3c18eSBarry Smith PetscTruth flg; 18537fc3c18eSBarry Smith int ierr; 18547fc3c18eSBarry Smith 18557fc3c18eSBarry Smith PetscFunctionBegin; 18567fc3c18eSBarry Smith a = matA->A; b = matA->B; 18577fc3c18eSBarry Smith c = matB->A; d = matB->B; 18587fc3c18eSBarry Smith 18597fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 18607fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 18617fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18627fc3c18eSBarry Smith } 18637fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18647fc3c18eSBarry Smith PetscFunctionReturn(0); 18657fc3c18eSBarry Smith } 18667fc3c18eSBarry Smith 1867273d9f13SBarry Smith 18684a2ae208SSatish Balay #undef __FUNCT__ 18694a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1870273d9f13SBarry Smith int MatSetUpPreallocation_MPIBAIJ(Mat A) 1871273d9f13SBarry Smith { 1872273d9f13SBarry Smith int ierr; 1873273d9f13SBarry Smith 1874273d9f13SBarry Smith PetscFunctionBegin; 1875273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1876273d9f13SBarry Smith PetscFunctionReturn(0); 1877273d9f13SBarry Smith } 1878273d9f13SBarry Smith 187979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1880cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1881cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1882cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1883cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1884cc2dc46cSBarry Smith MatMult_MPIBAIJ, 1885cc2dc46cSBarry Smith MatMultAdd_MPIBAIJ, 18867c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 18877c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1888cc2dc46cSBarry Smith 0, 1889cc2dc46cSBarry Smith 0, 1890cc2dc46cSBarry Smith 0, 1891cc2dc46cSBarry Smith 0, 1892cc2dc46cSBarry Smith 0, 1893cc2dc46cSBarry Smith 0, 1894cc2dc46cSBarry Smith 0, 1895cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 1896cc2dc46cSBarry Smith MatGetInfo_MPIBAIJ, 18977fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1898cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1899cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1900cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 1901cc2dc46cSBarry Smith MatAssemblyBegin_MPIBAIJ, 1902cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1903cc2dc46cSBarry Smith 0, 1904cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1905cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 1906cc2dc46cSBarry Smith MatZeroRows_MPIBAIJ, 1907cc2dc46cSBarry Smith 0, 1908cc2dc46cSBarry Smith 0, 1909cc2dc46cSBarry Smith 0, 1910cc2dc46cSBarry Smith 0, 1911273d9f13SBarry Smith MatSetUpPreallocation_MPIBAIJ, 1912273d9f13SBarry Smith 0, 1913cc2dc46cSBarry Smith 0, 1914cc2dc46cSBarry Smith 0, 1915cc2dc46cSBarry Smith 0, 19162e8a6d31SBarry Smith MatDuplicate_MPIBAIJ, 1917cc2dc46cSBarry Smith 0, 1918cc2dc46cSBarry Smith 0, 1919cc2dc46cSBarry Smith 0, 1920cc2dc46cSBarry Smith 0, 1921cc2dc46cSBarry Smith 0, 1922cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1923cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1924cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1925cc2dc46cSBarry Smith 0, 1926cc2dc46cSBarry Smith MatPrintHelp_MPIBAIJ, 1927cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1928cc2dc46cSBarry Smith 0, 1929cc2dc46cSBarry Smith 0, 1930cc2dc46cSBarry Smith 0, 1931cc2dc46cSBarry Smith MatGetBlockSize_MPIBAIJ, 1932cc2dc46cSBarry Smith 0, 1933cc2dc46cSBarry Smith 0, 1934cc2dc46cSBarry Smith 0, 1935cc2dc46cSBarry Smith 0, 1936cc2dc46cSBarry Smith 0, 1937cc2dc46cSBarry Smith 0, 1938cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1939cc2dc46cSBarry Smith 0, 1940cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 1941cc2dc46cSBarry Smith 0, 1942f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 1943f14a1c24SBarry Smith MatView_MPIBAIJ, 19448a124369SBarry Smith MatGetPetscMaps_Petsc, 19457843d17aSBarry Smith 0, 19467843d17aSBarry Smith 0, 19477843d17aSBarry Smith 0, 19487843d17aSBarry Smith 0, 19497843d17aSBarry Smith 0, 19507843d17aSBarry Smith 0, 19517843d17aSBarry Smith MatGetRowMax_MPIBAIJ}; 195279bdfe76SSatish Balay 19535ef9f2a5SBarry Smith 1954e18c124aSSatish Balay EXTERN_C_BEGIN 19554a2ae208SSatish Balay #undef __FUNCT__ 19564a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 19575ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 19585ef9f2a5SBarry Smith { 19595ef9f2a5SBarry Smith PetscFunctionBegin; 19605ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 19615ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 19625ef9f2a5SBarry Smith PetscFunctionReturn(0); 19635ef9f2a5SBarry Smith } 1964e18c124aSSatish Balay EXTERN_C_END 196579bdfe76SSatish Balay 1966273d9f13SBarry Smith EXTERN_C_BEGIN 19674a2ae208SSatish Balay #undef __FUNCT__ 1968a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 1969a23d5eceSKris Buschelman int MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1970a23d5eceSKris Buschelman { 1971a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 1972a23d5eceSKris Buschelman int ierr,i; 1973a23d5eceSKris Buschelman 1974a23d5eceSKris Buschelman PetscFunctionBegin; 1975a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1976a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1977a23d5eceSKris Buschelman 1978a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1979a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 1980a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 1981a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1982a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1983a23d5eceSKris Buschelman if (d_nnz) { 1984a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1985a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1986a23d5eceSKris Buschelman } 1987a23d5eceSKris Buschelman } 1988a23d5eceSKris Buschelman if (o_nnz) { 1989a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1990a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1991a23d5eceSKris Buschelman } 1992a23d5eceSKris Buschelman } 1993a23d5eceSKris Buschelman 1994a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1995a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1996a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1997a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 1998a23d5eceSKris Buschelman 1999a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2000a23d5eceSKris Buschelman b->bs = bs; 2001a23d5eceSKris Buschelman b->bs2 = bs*bs; 2002a23d5eceSKris Buschelman b->mbs = B->m/bs; 2003a23d5eceSKris Buschelman b->nbs = B->n/bs; 2004a23d5eceSKris Buschelman b->Mbs = B->M/bs; 2005a23d5eceSKris Buschelman b->Nbs = B->N/bs; 2006a23d5eceSKris Buschelman 2007a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2008a23d5eceSKris Buschelman b->rowners[0] = 0; 2009a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2010a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 2011a23d5eceSKris Buschelman } 2012a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 2013a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 2014a23d5eceSKris Buschelman 2015a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2016a23d5eceSKris Buschelman b->cowners[0] = 0; 2017a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2018a23d5eceSKris Buschelman b->cowners[i] += b->cowners[i-1]; 2019a23d5eceSKris Buschelman } 2020a23d5eceSKris Buschelman b->cstart = b->cowners[b->rank]; 2021a23d5eceSKris Buschelman b->cend = b->cowners[b->rank+1]; 2022a23d5eceSKris Buschelman 2023a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2024a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 2025a23d5eceSKris Buschelman } 2026a23d5eceSKris Buschelman b->rstart_bs = b->rstart*bs; 2027a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 2028a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 2029a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 2030a23d5eceSKris Buschelman 2031a23d5eceSKris Buschelman ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 2032a23d5eceSKris Buschelman PetscLogObjectParent(B,b->A); 2033a23d5eceSKris Buschelman ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 2034a23d5eceSKris Buschelman PetscLogObjectParent(B,b->B); 2035a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2036a23d5eceSKris Buschelman 2037a23d5eceSKris Buschelman PetscFunctionReturn(0); 2038a23d5eceSKris Buschelman } 2039a23d5eceSKris Buschelman EXTERN_C_END 2040a23d5eceSKris Buschelman 2041a23d5eceSKris Buschelman EXTERN_C_BEGIN 204292b32695SKris Buschelman EXTERN int MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 20435bf65638SKris Buschelman EXTERN int MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 204492b32695SKris Buschelman EXTERN_C_END 20455bf65638SKris Buschelman 204692b32695SKris Buschelman EXTERN_C_BEGIN 2047a23d5eceSKris Buschelman #undef __FUNCT__ 20484a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2049273d9f13SBarry Smith int MatCreate_MPIBAIJ(Mat B) 2050273d9f13SBarry Smith { 2051273d9f13SBarry Smith Mat_MPIBAIJ *b; 2052cfce73b9SSatish Balay int ierr; 2053273d9f13SBarry Smith PetscTruth flg; 2054273d9f13SBarry Smith 2055273d9f13SBarry Smith PetscFunctionBegin; 2056273d9f13SBarry Smith 205782502324SSatish Balay ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr); 205882502324SSatish Balay B->data = (void*)b; 205982502324SSatish Balay 2060273d9f13SBarry Smith ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2061273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2062273d9f13SBarry Smith B->mapping = 0; 2063273d9f13SBarry Smith B->factor = 0; 2064273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2065273d9f13SBarry Smith 2066273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2067273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 2068273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 2069273d9f13SBarry Smith 2070273d9f13SBarry Smith /* build local table of row and column ownerships */ 207182502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 2072b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 2073273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 2074273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2075273d9f13SBarry Smith 2076273d9f13SBarry Smith /* build cache for off array entries formed */ 2077273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 2078273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2079273d9f13SBarry Smith b->colmap = PETSC_NULL; 2080273d9f13SBarry Smith b->garray = PETSC_NULL; 2081273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2082273d9f13SBarry Smith 2083cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2084273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 208564a35ccbSBarry Smith b->setvalueslen = 0; 2086273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2087273d9f13SBarry Smith #endif 2088273d9f13SBarry Smith 2089273d9f13SBarry Smith /* stuff used in block assembly */ 2090273d9f13SBarry Smith b->barray = 0; 2091273d9f13SBarry Smith 2092273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2093273d9f13SBarry Smith b->lvec = 0; 2094273d9f13SBarry Smith b->Mvctx = 0; 2095273d9f13SBarry Smith 2096273d9f13SBarry Smith /* stuff for MatGetRow() */ 2097273d9f13SBarry Smith b->rowindices = 0; 2098273d9f13SBarry Smith b->rowvalues = 0; 2099273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2100273d9f13SBarry Smith 2101273d9f13SBarry Smith /* hash table stuff */ 2102273d9f13SBarry Smith b->ht = 0; 2103273d9f13SBarry Smith b->hd = 0; 2104273d9f13SBarry Smith b->ht_size = 0; 2105273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2106273d9f13SBarry Smith b->ht_fact = 0; 2107273d9f13SBarry Smith b->ht_total_ct = 0; 2108273d9f13SBarry Smith b->ht_insert_ct = 0; 2109273d9f13SBarry Smith 2110b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2111273d9f13SBarry Smith if (flg) { 2112f6275e2eSBarry Smith PetscReal fact = 1.39; 2113273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 211487828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2115273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2116273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2117b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2118273d9f13SBarry Smith } 2119273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2120273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2121273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2122273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2123273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2124273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2125273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2126273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2127273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2128a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2129a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2130a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 213192b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 213292b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 213392b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 21345bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 21355bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 21365bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2137273d9f13SBarry Smith PetscFunctionReturn(0); 2138273d9f13SBarry Smith } 2139273d9f13SBarry Smith EXTERN_C_END 2140273d9f13SBarry Smith 21414a2ae208SSatish Balay #undef __FUNCT__ 21424a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2143273d9f13SBarry Smith /*@C 2144273d9f13SBarry Smith MatMPIBAIJSetPreallocation - Creates a sparse parallel matrix in block AIJ format 2145273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2146273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2147273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2148273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2149273d9f13SBarry Smith 2150273d9f13SBarry Smith Collective on Mat 2151273d9f13SBarry Smith 2152273d9f13SBarry Smith Input Parameters: 2153273d9f13SBarry Smith + A - the matrix 2154273d9f13SBarry Smith . bs - size of blockk 2155273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2156273d9f13SBarry Smith submatrix (same for all local rows) 2157273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2158273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2159273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2160273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2161273d9f13SBarry Smith submatrix (same for all local rows). 2162273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2163273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2164273d9f13SBarry Smith each block row) or PETSC_NULL. 2165273d9f13SBarry Smith 2166273d9f13SBarry Smith Output Parameter: 2167273d9f13SBarry Smith 2168273d9f13SBarry Smith 2169273d9f13SBarry Smith Options Database Keys: 2170273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 2171273d9f13SBarry Smith block calculations (much slower) 2172273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 2173273d9f13SBarry Smith 2174273d9f13SBarry Smith Notes: 2175273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2176273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2177273d9f13SBarry Smith 2178273d9f13SBarry Smith Storage Information: 2179273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2180273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2181273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2182273d9f13SBarry Smith local matrix (a rectangular submatrix). 2183273d9f13SBarry Smith 2184273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2185273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2186273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2187273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2188273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2189273d9f13SBarry Smith 2190273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2191273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2192273d9f13SBarry Smith 2193273d9f13SBarry Smith .vb 2194273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2195273d9f13SBarry Smith ------------------- 2196273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2197273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2198273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2199273d9f13SBarry Smith ------------------- 2200273d9f13SBarry Smith .ve 2201273d9f13SBarry Smith 2202273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2203273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2204273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2205273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2206273d9f13SBarry Smith 2207273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2208273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2209273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2210273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2211273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2212273d9f13SBarry Smith matrices. 2213273d9f13SBarry Smith 2214273d9f13SBarry Smith Level: intermediate 2215273d9f13SBarry Smith 2216273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2217273d9f13SBarry Smith 2218273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2219273d9f13SBarry Smith @*/ 2220ca01db9bSBarry Smith int MatMPIBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 2221273d9f13SBarry Smith { 2222ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 2223273d9f13SBarry Smith 2224273d9f13SBarry Smith PetscFunctionBegin; 2225a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2226a23d5eceSKris Buschelman if (f) { 2227a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2228273d9f13SBarry Smith } 2229273d9f13SBarry Smith PetscFunctionReturn(0); 2230273d9f13SBarry Smith } 2231273d9f13SBarry Smith 22324a2ae208SSatish Balay #undef __FUNCT__ 22334a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 223479bdfe76SSatish Balay /*@C 223579bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 223679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 223779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 223879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 223979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 224079bdfe76SSatish Balay 2241db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2242db81eaa0SLois Curfman McInnes 224379bdfe76SSatish Balay Input Parameters: 2244db81eaa0SLois Curfman McInnes + comm - MPI communicator 224579bdfe76SSatish Balay . bs - size of blockk 224679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 224792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 224892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 224992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 225092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 225192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2252be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2253be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 225447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 225579bdfe76SSatish Balay submatrix (same for all local rows) 225647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 225792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2258db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 225947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 226079bdfe76SSatish Balay submatrix (same for all local rows). 226147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 226292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 226392e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 226479bdfe76SSatish Balay 226579bdfe76SSatish Balay Output Parameter: 226679bdfe76SSatish Balay . A - the matrix 226779bdfe76SSatish Balay 2268db81eaa0SLois Curfman McInnes Options Database Keys: 2269db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 2270db81eaa0SLois Curfman McInnes block calculations (much slower) 2271db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 22723ffaccefSLois Curfman McInnes 2273b259b22eSLois Curfman McInnes Notes: 227447a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 227547a75d0bSBarry Smith 227679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 227779bdfe76SSatish Balay (possibly both). 227879bdfe76SSatish Balay 2279be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2280be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2281be79a94dSBarry Smith 228279bdfe76SSatish Balay Storage Information: 228379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 228479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 228579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 228679bdfe76SSatish Balay local matrix (a rectangular submatrix). 228779bdfe76SSatish Balay 228879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 228979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 229079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 229179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 229279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 229379bdfe76SSatish Balay 229479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 229579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 229679bdfe76SSatish Balay 2297db81eaa0SLois Curfman McInnes .vb 2298db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2299db81eaa0SLois Curfman McInnes ------------------- 2300db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2301db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2302db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2303db81eaa0SLois Curfman McInnes ------------------- 2304db81eaa0SLois Curfman McInnes .ve 230579bdfe76SSatish Balay 230679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 230779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 230879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 230957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 231079bdfe76SSatish Balay 2311d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2312d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 231379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 231492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 231592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 23166da5968aSLois Curfman McInnes matrices. 231779bdfe76SSatish Balay 2318027ccd11SLois Curfman McInnes Level: intermediate 2319027ccd11SLois Curfman McInnes 232092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 232179bdfe76SSatish Balay 23223eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 232379bdfe76SSatish Balay @*/ 2324ca01db9bSBarry Smith int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 232579bdfe76SSatish Balay { 2326273d9f13SBarry Smith int ierr,size; 232779bdfe76SSatish Balay 2328d64ed03dSBarry Smith PetscFunctionBegin; 2329273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2330d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2331273d9f13SBarry Smith if (size > 1) { 2332273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2333273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2334273d9f13SBarry Smith } else { 2335273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2336273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 23373914022bSBarry Smith } 23383a40ed3dSBarry Smith PetscFunctionReturn(0); 233979bdfe76SSatish Balay } 2340026e39d0SSatish Balay 23414a2ae208SSatish Balay #undef __FUNCT__ 23424a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 23432e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 23440ac07820SSatish Balay { 23450ac07820SSatish Balay Mat mat; 23460ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2347f1af5d2fSBarry Smith int ierr,len=0; 23480ac07820SSatish Balay 2349d64ed03dSBarry Smith PetscFunctionBegin; 23500ac07820SSatish Balay *newmat = 0; 2351273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2352273d9f13SBarry Smith ierr = MatSetType(mat,MATMPIBAIJ);CHKERRQ(ierr); 2353273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 23540ac07820SSatish Balay mat->assembled = PETSC_TRUE; 2355273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 23560ac07820SSatish Balay a->bs = oldmat->bs; 23570ac07820SSatish Balay a->bs2 = oldmat->bs2; 23580ac07820SSatish Balay a->mbs = oldmat->mbs; 23590ac07820SSatish Balay a->nbs = oldmat->nbs; 23600ac07820SSatish Balay a->Mbs = oldmat->Mbs; 23610ac07820SSatish Balay a->Nbs = oldmat->Nbs; 23620ac07820SSatish Balay 23630ac07820SSatish Balay a->rstart = oldmat->rstart; 23640ac07820SSatish Balay a->rend = oldmat->rend; 23650ac07820SSatish Balay a->cstart = oldmat->cstart; 23660ac07820SSatish Balay a->cend = oldmat->cend; 23670ac07820SSatish Balay a->size = oldmat->size; 23680ac07820SSatish Balay a->rank = oldmat->rank; 2369aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2370aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2371aef5e8e0SSatish Balay a->rowindices = 0; 23720ac07820SSatish Balay a->rowvalues = 0; 23730ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 237430793edcSSatish Balay a->barray = 0; 23753123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 23763123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 23773123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 23783123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 23790ac07820SSatish Balay 2380133cdb44SSatish Balay /* hash table stuff */ 2381133cdb44SSatish Balay a->ht = 0; 2382133cdb44SSatish Balay a->hd = 0; 2383133cdb44SSatish Balay a->ht_size = 0; 2384133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 238525fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2386133cdb44SSatish Balay a->ht_total_ct = 0; 2387133cdb44SSatish Balay a->ht_insert_ct = 0; 2388133cdb44SSatish Balay 2389549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 23908798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 23918798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 23920ac07820SSatish Balay if (oldmat->colmap) { 2393aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 23940f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 239548e59246SSatish Balay #else 239682502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2397b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2398549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 239948e59246SSatish Balay #endif 24000ac07820SSatish Balay } else a->colmap = 0; 24010ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 240282502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2403b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2404549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 24050ac07820SSatish Balay } else a->garray = 0; 24060ac07820SSatish Balay 24070ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2408b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 24090ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2410e18c124aSSatish Balay 2411b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 24122e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2413b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 24142e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2415b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2416b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 24170ac07820SSatish Balay *newmat = mat; 24183a40ed3dSBarry Smith PetscFunctionReturn(0); 24190ac07820SSatish Balay } 242057b952d6SSatish Balay 2421e090d566SSatish Balay #include "petscsys.h" 242257b952d6SSatish Balay 2423273d9f13SBarry Smith EXTERN_C_BEGIN 24244a2ae208SSatish Balay #undef __FUNCT__ 24254a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2426b0a32e0cSBarry Smith int MatLoad_MPIBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 242757b952d6SSatish Balay { 242857b952d6SSatish Balay Mat A; 242957b952d6SSatish Balay int i,nz,ierr,j,rstart,rend,fd; 243087828ca2SBarry Smith PetscScalar *vals,*buf; 243157b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 243257b952d6SSatish Balay MPI_Status status; 2433cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 243457b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2435f1af5d2fSBarry Smith int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 243657b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 243757b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 243827fa2452SHong Zhang #if defined(PETSC_HAVE_DSCPACK) 243927fa2452SHong Zhang PetscTruth flag; 244027fa2452SHong Zhang #endif 244157b952d6SSatish Balay 2442d64ed03dSBarry Smith PetscFunctionBegin; 2443b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 244457b952d6SSatish Balay 2445d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2446d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 244757b952d6SSatish Balay if (!rank) { 2448b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2449e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2450552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2451d64ed03dSBarry Smith if (header[3] < 0) { 245229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPIBAIJ"); 2453d64ed03dSBarry Smith } 24546c5fab8fSBarry Smith } 2455d64ed03dSBarry Smith 2456ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 245757b952d6SSatish Balay M = header[1]; N = header[2]; 245857b952d6SSatish Balay 245929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 246057b952d6SSatish Balay 246157b952d6SSatish Balay /* 246257b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 246357b952d6SSatish Balay divisible by the blocksize 246457b952d6SSatish Balay */ 246557b952d6SSatish Balay Mbs = M/bs; 246657b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 246757b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 246857b952d6SSatish Balay else Mbs++; 246957b952d6SSatish Balay if (extra_rows &&!rank) { 2470b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 247157b952d6SSatish Balay } 2472537820f0SBarry Smith 247357b952d6SSatish Balay /* determine ownership of all rows */ 247457b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 247557b952d6SSatish Balay m = mbs*bs; 2476b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2477cee3aa6bSSatish Balay browners = rowners + size + 1; 2478ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 247957b952d6SSatish Balay rowners[0] = 0; 2480cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2481cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 248257b952d6SSatish Balay rstart = rowners[rank]; 248357b952d6SSatish Balay rend = rowners[rank+1]; 248457b952d6SSatish Balay 248557b952d6SSatish Balay /* distribute row lengths to all processors */ 248682502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 248757b952d6SSatish Balay if (!rank) { 2488b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2489e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 249057b952d6SSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 249182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2492cee3aa6bSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2493ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2494606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2495d64ed03dSBarry Smith } else { 2496ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 249757b952d6SSatish Balay } 249857b952d6SSatish Balay 249957b952d6SSatish Balay if (!rank) { 250057b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 250182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2502549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 250357b952d6SSatish Balay for (i=0; i<size; i++) { 250457b952d6SSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 250557b952d6SSatish Balay procsnz[i] += rowlengths[j]; 250657b952d6SSatish Balay } 250757b952d6SSatish Balay } 2508606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 250957b952d6SSatish Balay 251057b952d6SSatish Balay /* determine max buffer needed and allocate it */ 251157b952d6SSatish Balay maxnz = 0; 251257b952d6SSatish Balay for (i=0; i<size; i++) { 251357b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 251457b952d6SSatish Balay } 251582502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 251657b952d6SSatish Balay 251757b952d6SSatish Balay /* read in my part of the matrix column indices */ 251857b952d6SSatish Balay nz = procsnz[0]; 251982502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 252057b952d6SSatish Balay mycols = ibuf; 2521cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2522e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2523cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2524cee3aa6bSSatish Balay 252557b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 252657b952d6SSatish Balay for (i=1; i<size-1; i++) { 252757b952d6SSatish Balay nz = procsnz[i]; 2528e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2529ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 253057b952d6SSatish Balay } 253157b952d6SSatish Balay /* read in the stuff for the last proc */ 253257b952d6SSatish Balay if (size != 1) { 253357b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2534e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 253557b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2536ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 253757b952d6SSatish Balay } 2538606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2539d64ed03dSBarry Smith } else { 254057b952d6SSatish Balay /* determine buffer space needed for message */ 254157b952d6SSatish Balay nz = 0; 254257b952d6SSatish Balay for (i=0; i<m; i++) { 254357b952d6SSatish Balay nz += locrowlens[i]; 254457b952d6SSatish Balay } 254582502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 254657b952d6SSatish Balay mycols = ibuf; 254757b952d6SSatish Balay /* receive message of column indices*/ 2548ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2549ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 255029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 255157b952d6SSatish Balay } 255257b952d6SSatish Balay 255357b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 255482502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2555cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 255682502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2557549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 255857b952d6SSatish Balay masked1 = mask + Mbs; 255957b952d6SSatish Balay masked2 = masked1 + Mbs; 256057b952d6SSatish Balay rowcount = 0; nzcount = 0; 256157b952d6SSatish Balay for (i=0; i<mbs; i++) { 256257b952d6SSatish Balay dcount = 0; 256357b952d6SSatish Balay odcount = 0; 256457b952d6SSatish Balay for (j=0; j<bs; j++) { 256557b952d6SSatish Balay kmax = locrowlens[rowcount]; 256657b952d6SSatish Balay for (k=0; k<kmax; k++) { 256757b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 256857b952d6SSatish Balay if (!mask[tmp]) { 256957b952d6SSatish Balay mask[tmp] = 1; 257057b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 257157b952d6SSatish Balay else masked1[dcount++] = tmp; 257257b952d6SSatish Balay } 257357b952d6SSatish Balay } 257457b952d6SSatish Balay rowcount++; 257557b952d6SSatish Balay } 2576cee3aa6bSSatish Balay 257757b952d6SSatish Balay dlens[i] = dcount; 257857b952d6SSatish Balay odlens[i] = odcount; 2579cee3aa6bSSatish Balay 258057b952d6SSatish Balay /* zero out the mask elements we set */ 258157b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 258257b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 258357b952d6SSatish Balay } 2584cee3aa6bSSatish Balay 258557b952d6SSatish Balay /* create our matrix */ 258647a75d0bSBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,m,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 258757b952d6SSatish Balay A = *newmat; 25886d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 258957b952d6SSatish Balay 259057b952d6SSatish Balay if (!rank) { 259187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 259257b952d6SSatish Balay /* read in my part of the matrix numerical values */ 259357b952d6SSatish Balay nz = procsnz[0]; 259457b952d6SSatish Balay vals = buf; 2595cee3aa6bSSatish Balay mycols = ibuf; 2596cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2597e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2598cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2599537820f0SBarry Smith 260057b952d6SSatish Balay /* insert into matrix */ 260157b952d6SSatish Balay jj = rstart*bs; 260257b952d6SSatish Balay for (i=0; i<m; i++) { 2603b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 260457b952d6SSatish Balay mycols += locrowlens[i]; 260557b952d6SSatish Balay vals += locrowlens[i]; 260657b952d6SSatish Balay jj++; 260757b952d6SSatish Balay } 260857b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 260957b952d6SSatish Balay for (i=1; i<size-1; i++) { 261057b952d6SSatish Balay nz = procsnz[i]; 261157b952d6SSatish Balay vals = buf; 2612e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2613ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 261457b952d6SSatish Balay } 261557b952d6SSatish Balay /* the last proc */ 261657b952d6SSatish Balay if (size != 1){ 261757b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2618cee3aa6bSSatish Balay vals = buf; 2619e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 262057b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2621ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 262257b952d6SSatish Balay } 2623606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2624d64ed03dSBarry Smith } else { 262557b952d6SSatish Balay /* receive numeric values */ 262687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 262757b952d6SSatish Balay 262857b952d6SSatish Balay /* receive message of values*/ 262957b952d6SSatish Balay vals = buf; 2630cee3aa6bSSatish Balay mycols = ibuf; 2631ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2632ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 263329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 263457b952d6SSatish Balay 263557b952d6SSatish Balay /* insert into matrix */ 263657b952d6SSatish Balay jj = rstart*bs; 2637cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2638b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 263957b952d6SSatish Balay mycols += locrowlens[i]; 264057b952d6SSatish Balay vals += locrowlens[i]; 264157b952d6SSatish Balay jj++; 264257b952d6SSatish Balay } 264357b952d6SSatish Balay } 2644606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2645606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2646606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2647606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2648606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2649606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 26506d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26516d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 265227fa2452SHong Zhang #if defined(PETSC_HAVE_DSCPACK) 265327fa2452SHong Zhang ierr = PetscOptionsHasName(A->prefix,"-mat_baij_dscpack",&flag);CHKERRQ(ierr); 265427fa2452SHong Zhang if (flag) { ierr = MatUseDSCPACK_MPIBAIJ(A);CHKERRQ(ierr); } 265527fa2452SHong Zhang #endif 26563a40ed3dSBarry Smith PetscFunctionReturn(0); 265757b952d6SSatish Balay } 2658273d9f13SBarry Smith EXTERN_C_END 265957b952d6SSatish Balay 26604a2ae208SSatish Balay #undef __FUNCT__ 26614a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2662133cdb44SSatish Balay /*@ 2663133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2664133cdb44SSatish Balay 2665133cdb44SSatish Balay Input Parameters: 2666133cdb44SSatish Balay . mat - the matrix 2667133cdb44SSatish Balay . fact - factor 2668133cdb44SSatish Balay 2669fee21e36SBarry Smith Collective on Mat 2670fee21e36SBarry Smith 26718c890885SBarry Smith Level: advanced 26728c890885SBarry Smith 2673133cdb44SSatish Balay Notes: 2674133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2675133cdb44SSatish Balay 2676133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2677133cdb44SSatish Balay 2678133cdb44SSatish Balay .seealso: MatSetOption() 2679133cdb44SSatish Balay @*/ 2680329f5518SBarry Smith int MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2681133cdb44SSatish Balay { 26825bf65638SKris Buschelman int ierr,(*f)(Mat,PetscReal); 26835bf65638SKris Buschelman 26845bf65638SKris Buschelman PetscFunctionBegin; 26855bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 26865bf65638SKris Buschelman if (f) { 26875bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 26885bf65638SKris Buschelman } 26895bf65638SKris Buschelman PetscFunctionReturn(0); 26905bf65638SKris Buschelman } 26915bf65638SKris Buschelman 26925bf65638SKris Buschelman #undef __FUNCT__ 26935bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 26945bf65638SKris Buschelman int MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 26955bf65638SKris Buschelman { 269625fdafccSSatish Balay Mat_MPIBAIJ *baij; 2697133cdb44SSatish Balay 2698133cdb44SSatish Balay PetscFunctionBegin; 2699133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 2700133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2701133cdb44SSatish Balay baij->ht_fact = fact; 2702133cdb44SSatish Balay PetscFunctionReturn(0); 2703133cdb44SSatish Balay } 2704f2a5309cSSatish Balay 27054a2ae208SSatish Balay #undef __FUNCT__ 27064a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2707435da068SBarry Smith int MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,int **colmap) 2708f2a5309cSSatish Balay { 2709f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2710f2a5309cSSatish Balay PetscFunctionBegin; 2711f2a5309cSSatish Balay *Ad = a->A; 2712f2a5309cSSatish Balay *Ao = a->B; 2713195d93cdSBarry Smith *colmap = a->garray; 2714f2a5309cSSatish Balay PetscFunctionReturn(0); 2715f2a5309cSSatish Balay } 2716