xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision f2a5309cf2bd60e875de7457ab3728dd4e42fdc5)
1*f2a5309cSSatish Balay /*$Id: mpibaij.c,v 1.213 2001/02/08 17:55:00 balay Exp bsmith $*/
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
4c16cb8f2SBarry Smith #include "src/vec/vecimpl.h"
579bdfe76SSatish Balay 
6ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIBAIJ(Mat);
7ca44d042SBarry Smith EXTERN int DisAssemble_MPIBAIJ(Mat);
8ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int);
9ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **);
10ca44d042SBarry Smith EXTERN int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *);
11ca44d042SBarry Smith EXTERN int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode);
12ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode);
13ca44d042SBarry Smith EXTERN int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
14ca44d042SBarry Smith EXTERN int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
15ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqBAIJ(Mat);
16ca44d042SBarry Smith EXTERN int MatZeroRows_SeqBAIJ(Mat,IS,Scalar*);
1793fea6afSBarry Smith 
1893fea6afSBarry Smith /*  UGLY, ugly, ugly
1993fea6afSBarry Smith    When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
2093fea6afSBarry Smith    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
2193fea6afSBarry Smith    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
2293fea6afSBarry Smith    converts the entries into single precision and then calls ..._MatScalar() to put them
2393fea6afSBarry Smith    into the single precision data structures.
2493fea6afSBarry Smith */
2593fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
26ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
27ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
28ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
29ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
30ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
3193fea6afSBarry Smith #else
326fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar      MatSetValuesBlocked_SeqBAIJ
3393fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar             MatSetValues_MPIBAIJ
3493fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar      MatSetValuesBlocked_MPIBAIJ
356fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar          MatSetValues_MPIBAIJ_HT
366fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar   MatSetValuesBlocked_MPIBAIJ_HT
3793fea6afSBarry Smith #endif
383b2fbd54SBarry Smith 
397843d17aSBarry Smith #undef __FUNC__
40b0a32e0cSBarry Smith #define __FUNC__ "MatGetRowMax_MPIBAIJ"
417843d17aSBarry Smith int MatGetRowMax_MPIBAIJ(Mat A,Vec v)
427843d17aSBarry Smith {
437843d17aSBarry Smith   Mat_MPIBAIJ  *a = (Mat_MPIBAIJ*)A->data;
447843d17aSBarry Smith   int          ierr,i;
45273d9f13SBarry Smith   Scalar       *va,*vb;
467843d17aSBarry Smith   Vec          vtmp;
477843d17aSBarry Smith 
487843d17aSBarry Smith   PetscFunctionBegin;
497843d17aSBarry Smith 
507843d17aSBarry Smith   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
51273d9f13SBarry Smith   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
527843d17aSBarry Smith 
53ac355199SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr);
547843d17aSBarry Smith   ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr);
55273d9f13SBarry Smith   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
567843d17aSBarry Smith 
57273d9f13SBarry Smith   for (i=0; i<A->m; i++){
58273d9f13SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i];
597843d17aSBarry Smith   }
607843d17aSBarry Smith 
617843d17aSBarry Smith   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
627843d17aSBarry Smith   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
63ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionReturn(0);
667843d17aSBarry Smith }
677843d17aSBarry Smith 
687fc3c18eSBarry Smith EXTERN_C_BEGIN
697fc3c18eSBarry Smith #undef __FUNC__
70b0a32e0cSBarry Smith #define __FUNC__ "MatStoreValues_MPIBAIJ"
717fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat)
727fc3c18eSBarry Smith {
737fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
747fc3c18eSBarry Smith   int         ierr;
757fc3c18eSBarry Smith 
767fc3c18eSBarry Smith   PetscFunctionBegin;
777fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
787fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
797fc3c18eSBarry Smith   PetscFunctionReturn(0);
807fc3c18eSBarry Smith }
817fc3c18eSBarry Smith EXTERN_C_END
827fc3c18eSBarry Smith 
837fc3c18eSBarry Smith EXTERN_C_BEGIN
847fc3c18eSBarry Smith #undef __FUNC__
85b0a32e0cSBarry Smith #define __FUNC__ "MatRetrieveValues_MPIBAIJ"
867fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat)
877fc3c18eSBarry Smith {
887fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
897fc3c18eSBarry Smith   int         ierr;
907fc3c18eSBarry Smith 
917fc3c18eSBarry Smith   PetscFunctionBegin;
927fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
937fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
947fc3c18eSBarry Smith   PetscFunctionReturn(0);
957fc3c18eSBarry Smith }
967fc3c18eSBarry Smith EXTERN_C_END
977fc3c18eSBarry Smith 
98537820f0SBarry Smith /*
99537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
10057b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
10157b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
10257b952d6SSatish Balay    length of colmap equals the global matrix length.
10357b952d6SSatish Balay */
1045615d1e5SSatish Balay #undef __FUNC__
105b0a32e0cSBarry Smith #define __FUNC__ "CreateColmap_MPIBAIJ_Private"
10657b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat)
10757b952d6SSatish Balay {
10857b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
10957b952d6SSatish Balay   Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data;
110dc2900e9SSatish Balay   int         nbs = B->nbs,i,bs=B->bs,ierr;
11157b952d6SSatish Balay 
112d64ed03dSBarry Smith   PetscFunctionBegin;
113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
114f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
11548e59246SSatish Balay   for (i=0; i<nbs; i++){
1160f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
11748e59246SSatish Balay   }
11848e59246SSatish Balay #else
11982502324SSatish Balay   ierr = PetscMalloc((baij->Nbs+1)*sizeof(int),&baij->colmap);CHKERRQ(ierr);
120b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,baij->Nbs*sizeof(int));
121549d3d68SSatish Balay   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr);
122928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
12348e59246SSatish Balay #endif
1243a40ed3dSBarry Smith   PetscFunctionReturn(0);
12557b952d6SSatish Balay }
12657b952d6SSatish Balay 
12780c1aa95SSatish Balay #define CHUNKSIZE  10
12880c1aa95SSatish Balay 
129f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
13080c1aa95SSatish Balay { \
13180c1aa95SSatish Balay  \
13280c1aa95SSatish Balay     brow = row/bs;  \
13380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
134ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
13580c1aa95SSatish Balay       bcol = col/bs; \
13680c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
137ab26458aSBarry Smith       low = 0; high = nrow; \
138ab26458aSBarry Smith       while (high-low > 3) { \
139ab26458aSBarry Smith         t = (low+high)/2; \
140ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
141ab26458aSBarry Smith         else              low  = t; \
142ab26458aSBarry Smith       } \
143ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
14480c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
14580c1aa95SSatish Balay         if (rp[_i] == bcol) { \
14680c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
147eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
148eada6651SSatish Balay           else                    *bap  = value;  \
149ac7a638eSSatish Balay           goto a_noinsert; \
15080c1aa95SSatish Balay         } \
15180c1aa95SSatish Balay       } \
15289280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
15329bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
15480c1aa95SSatish Balay       if (nrow >= rmax) { \
15580c1aa95SSatish Balay         /* there is no extra room in row, therefore enlarge */ \
15680c1aa95SSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
1573eda8832SBarry Smith         MatScalar *new_a; \
15880c1aa95SSatish Balay  \
15929bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
16089280ab3SLois Curfman McInnes  \
16180c1aa95SSatish Balay         /* malloc new storage space */ \
1623eda8832SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
16382502324SSatish Balay         ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
16480c1aa95SSatish Balay         new_j   = (int*)(new_a + bs2*new_nz); \
16580c1aa95SSatish Balay         new_i   = new_j + new_nz; \
16680c1aa95SSatish Balay  \
16780c1aa95SSatish Balay         /* copy over old data into new slots */ \
16880c1aa95SSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
16980c1aa95SSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
170549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
17180c1aa95SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1723eda8832SBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
1733eda8832SBarry Smith         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
174549d3d68SSatish Balay         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \
175549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
1763eda8832SBarry Smith                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
17780c1aa95SSatish Balay         /* free up old matrix storage */ \
178606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
179606d414cSSatish Balay         if (!a->singlemalloc) { \
180606d414cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
181606d414cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
182606d414cSSatish Balay         } \
18380c1aa95SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
1847c922b88SBarry Smith         a->singlemalloc = PETSC_TRUE; \
18580c1aa95SSatish Balay  \
18680c1aa95SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
187ac7a638eSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
188b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
18980c1aa95SSatish Balay         a->maxnz += bs2*CHUNKSIZE; \
19080c1aa95SSatish Balay         a->reallocs++; \
19180c1aa95SSatish Balay         a->nz++; \
19280c1aa95SSatish Balay       } \
19380c1aa95SSatish Balay       N = nrow++ - 1;  \
19480c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
19580c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
19680c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1973eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
19880c1aa95SSatish Balay       } \
1993eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
20080c1aa95SSatish Balay       rp[_i]                      = bcol;  \
20180c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
202ac7a638eSSatish Balay       a_noinsert:; \
20380c1aa95SSatish Balay     ailen[brow] = nrow; \
20480c1aa95SSatish Balay }
20557b952d6SSatish Balay 
206ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
207ac7a638eSSatish Balay { \
208ac7a638eSSatish Balay     brow = row/bs;  \
209ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
210ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
211ac7a638eSSatish Balay       bcol = col/bs; \
212ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
213ac7a638eSSatish Balay       low = 0; high = nrow; \
214ac7a638eSSatish Balay       while (high-low > 3) { \
215ac7a638eSSatish Balay         t = (low+high)/2; \
216ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
217ac7a638eSSatish Balay         else              low  = t; \
218ac7a638eSSatish Balay       } \
219ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
220ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
221ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
222ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
223ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
224ac7a638eSSatish Balay           else                    *bap  = value;  \
225ac7a638eSSatish Balay           goto b_noinsert; \
226ac7a638eSSatish Balay         } \
227ac7a638eSSatish Balay       } \
22889280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
22929bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
230ac7a638eSSatish Balay       if (nrow >= rmax) { \
231ac7a638eSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
23274c639caSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
2333eda8832SBarry Smith         MatScalar *new_a; \
234ac7a638eSSatish Balay  \
23529bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
23689280ab3SLois Curfman McInnes  \
237ac7a638eSSatish Balay         /* malloc new storage space */ \
2383eda8832SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
23982502324SSatish Balay         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
240ac7a638eSSatish Balay         new_j   = (int*)(new_a + bs2*new_nz); \
241ac7a638eSSatish Balay         new_i   = new_j + new_nz; \
242ac7a638eSSatish Balay  \
243ac7a638eSSatish Balay         /* copy over old data into new slots */ \
244ac7a638eSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
24574c639caSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
246549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
247ac7a638eSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
2483eda8832SBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
2493eda8832SBarry Smith         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
2503eda8832SBarry Smith         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
251549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
2523eda8832SBarry Smith                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
253ac7a638eSSatish Balay         /* free up old matrix storage */ \
254606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
255606d414cSSatish Balay         if (!b->singlemalloc) { \
256606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
257606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
258606d414cSSatish Balay         } \
25974c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
2607c922b88SBarry Smith         b->singlemalloc = PETSC_TRUE; \
261ac7a638eSSatish Balay  \
262ac7a638eSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
263ac7a638eSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
264b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
26574c639caSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
26674c639caSSatish Balay         b->reallocs++; \
26774c639caSSatish Balay         b->nz++; \
268ac7a638eSSatish Balay       } \
269ac7a638eSSatish Balay       N = nrow++ - 1;  \
270ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
271ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
272ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
2733eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
274ac7a638eSSatish Balay       } \
2753eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
276ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
277ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
278ac7a638eSSatish Balay       b_noinsert:; \
279ac7a638eSSatish Balay     bilen[brow] = nrow; \
280ac7a638eSSatish Balay }
281ac7a638eSSatish Balay 
28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
2835615d1e5SSatish Balay #undef __FUNC__
284b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ"
285ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
28657b952d6SSatish Balay {
2876fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
28893fea6afSBarry Smith   int         ierr,i,N = m*n;
2896fa18ffdSBarry Smith   MatScalar   *vsingle;
29093fea6afSBarry Smith 
29193fea6afSBarry Smith   PetscFunctionBegin;
2926fa18ffdSBarry Smith   if (N > b->setvalueslen) {
2936fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
29482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2956fa18ffdSBarry Smith     b->setvalueslen  = N;
2966fa18ffdSBarry Smith   }
2976fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2986fa18ffdSBarry Smith 
29993fea6afSBarry Smith   for (i=0; i<N; i++) {
30093fea6afSBarry Smith     vsingle[i] = v[i];
30193fea6afSBarry Smith   }
30293fea6afSBarry Smith   ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
30393fea6afSBarry Smith   PetscFunctionReturn(0);
30493fea6afSBarry Smith }
30593fea6afSBarry Smith 
30693fea6afSBarry Smith #undef __FUNC__
307b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ"
30893fea6afSBarry Smith int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
30993fea6afSBarry Smith {
3106fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
3116fa18ffdSBarry Smith   int         ierr,i,N = m*n*b->bs2;
3126fa18ffdSBarry Smith   MatScalar   *vsingle;
31393fea6afSBarry Smith 
31493fea6afSBarry Smith   PetscFunctionBegin;
3156fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3166fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
31782502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3186fa18ffdSBarry Smith     b->setvalueslen  = N;
3196fa18ffdSBarry Smith   }
3206fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
32193fea6afSBarry Smith   for (i=0; i<N; i++) {
32293fea6afSBarry Smith     vsingle[i] = v[i];
32393fea6afSBarry Smith   }
32493fea6afSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
32593fea6afSBarry Smith   PetscFunctionReturn(0);
32693fea6afSBarry Smith }
3276fa18ffdSBarry Smith 
3286fa18ffdSBarry Smith #undef __FUNC__
329b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ_HT"
3306fa18ffdSBarry Smith int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
3316fa18ffdSBarry Smith {
3326fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
3336fa18ffdSBarry Smith   int         ierr,i,N = m*n;
3346fa18ffdSBarry Smith   MatScalar   *vsingle;
3356fa18ffdSBarry Smith 
3366fa18ffdSBarry Smith   PetscFunctionBegin;
3376fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3386fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
33982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3406fa18ffdSBarry Smith     b->setvalueslen  = N;
3416fa18ffdSBarry Smith   }
3426fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
3436fa18ffdSBarry Smith   for (i=0; i<N; i++) {
3446fa18ffdSBarry Smith     vsingle[i] = v[i];
3456fa18ffdSBarry Smith   }
3466fa18ffdSBarry Smith   ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3476fa18ffdSBarry Smith   PetscFunctionReturn(0);
3486fa18ffdSBarry Smith }
3496fa18ffdSBarry Smith 
3506fa18ffdSBarry Smith #undef __FUNC__
351b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT"
3526fa18ffdSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
3536fa18ffdSBarry Smith {
3546fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
3556fa18ffdSBarry Smith   int         ierr,i,N = m*n*b->bs2;
3566fa18ffdSBarry Smith   MatScalar   *vsingle;
3576fa18ffdSBarry Smith 
3586fa18ffdSBarry Smith   PetscFunctionBegin;
3596fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3606fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
36182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3626fa18ffdSBarry Smith     b->setvalueslen  = N;
3636fa18ffdSBarry Smith   }
3646fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
3656fa18ffdSBarry Smith   for (i=0; i<N; i++) {
3666fa18ffdSBarry Smith     vsingle[i] = v[i];
3676fa18ffdSBarry Smith   }
3686fa18ffdSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3696fa18ffdSBarry Smith   PetscFunctionReturn(0);
3706fa18ffdSBarry Smith }
37193fea6afSBarry Smith #endif
37293fea6afSBarry Smith 
37393fea6afSBarry Smith #undef __FUNC__
374b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ"
37593fea6afSBarry Smith int MatSetValues_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
37693fea6afSBarry Smith {
37757b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
37893fea6afSBarry Smith   MatScalar   value;
379273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
3804fa0d573SSatish Balay   int         ierr,i,j,row,col;
381273d9f13SBarry Smith   int         rstart_orig=baij->rstart_bs;
3824fa0d573SSatish Balay   int         rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
3834fa0d573SSatish Balay   int         cend_orig=baij->cend_bs,bs=baij->bs;
38457b952d6SSatish Balay 
385eada6651SSatish Balay   /* Some Variables required in the macro */
38680c1aa95SSatish Balay   Mat         A = baij->A;
38780c1aa95SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data;
388ac7a638eSSatish Balay   int         *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
3893eda8832SBarry Smith   MatScalar   *aa=a->a;
390ac7a638eSSatish Balay 
391ac7a638eSSatish Balay   Mat         B = baij->B;
392ac7a638eSSatish Balay   Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data;
393ac7a638eSSatish Balay   int         *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
3943eda8832SBarry Smith   MatScalar   *ba=b->a;
395ac7a638eSSatish Balay 
396ac7a638eSSatish Balay   int         *rp,ii,nrow,_i,rmax,N,brow,bcol;
397ab26458aSBarry Smith   int         low,high,t,ridx,cidx,bs2=a->bs2;
3983eda8832SBarry Smith   MatScalar   *ap,*bap;
39980c1aa95SSatish Balay 
400d64ed03dSBarry Smith   PetscFunctionBegin;
40157b952d6SSatish Balay   for (i=0; i<m; i++) {
4025ef9f2a5SBarry Smith     if (im[i] < 0) continue;
403aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
404273d9f13SBarry Smith     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
405639f9d9dSBarry Smith #endif
40657b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
40757b952d6SSatish Balay       row = im[i] - rstart_orig;
40857b952d6SSatish Balay       for (j=0; j<n; j++) {
40957b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
41057b952d6SSatish Balay           col = in[j] - cstart_orig;
41157b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
412f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
41380c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
41473959e64SBarry Smith         } else if (in[j] < 0) continue;
415aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
416273d9f13SBarry Smith         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");}
417639f9d9dSBarry Smith #endif
41857b952d6SSatish Balay         else {
41957b952d6SSatish Balay           if (mat->was_assembled) {
420905e6a2fSBarry Smith             if (!baij->colmap) {
421905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
422905e6a2fSBarry Smith             }
423aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
4240f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
425fa46199cSSatish Balay             col  = col - 1 + in[j]%bs;
42648e59246SSatish Balay #else
427905e6a2fSBarry Smith             col = baij->colmap[in[j]/bs] - 1 + in[j]%bs;
42848e59246SSatish Balay #endif
42957b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
43057b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
43157b952d6SSatish Balay               col =  in[j];
4329bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
4339bf004c3SSatish Balay               B = baij->B;
4349bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
4359bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
4369bf004c3SSatish Balay               ba=b->a;
43757b952d6SSatish Balay             }
438d64ed03dSBarry Smith           } else col = in[j];
43957b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
440ac7a638eSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
441ac7a638eSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
44257b952d6SSatish Balay         }
44357b952d6SSatish Balay       }
444d64ed03dSBarry Smith     } else {
44590f02eecSBarry Smith       if (!baij->donotstash) {
446ff2fd236SBarry Smith         if (roworiented) {
4476fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
448ff2fd236SBarry Smith         } else {
4496fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
45057b952d6SSatish Balay         }
45157b952d6SSatish Balay       }
45257b952d6SSatish Balay     }
45390f02eecSBarry Smith   }
4543a40ed3dSBarry Smith   PetscFunctionReturn(0);
45557b952d6SSatish Balay }
45657b952d6SSatish Balay 
457ab26458aSBarry Smith #undef __FUNC__
45846680499SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_MatScalar"
45993fea6afSBarry Smith int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
460ab26458aSBarry Smith {
461ab26458aSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
46293fea6afSBarry Smith   MatScalar   *value,*barray=baij->barray;
463273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
464273d9f13SBarry Smith   int         ierr,i,j,ii,jj,row,col,rstart=baij->rstart;
465ab26458aSBarry Smith   int         rend=baij->rend,cstart=baij->cstart,stepval;
466ab26458aSBarry Smith   int         cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
467ab26458aSBarry Smith 
468b16ae2b1SBarry Smith   PetscFunctionBegin;
46930793edcSSatish Balay   if(!barray) {
47082502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
47182502324SSatish Balay     baij->barray = barray;
47230793edcSSatish Balay   }
47330793edcSSatish Balay 
474ab26458aSBarry Smith   if (roworiented) {
475ab26458aSBarry Smith     stepval = (n-1)*bs;
476ab26458aSBarry Smith   } else {
477ab26458aSBarry Smith     stepval = (m-1)*bs;
478ab26458aSBarry Smith   }
479ab26458aSBarry Smith   for (i=0; i<m; i++) {
4805ef9f2a5SBarry Smith     if (im[i] < 0) continue;
481aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
48229bbc08cSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs);
483ab26458aSBarry Smith #endif
484ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
485ab26458aSBarry Smith       row = im[i] - rstart;
486ab26458aSBarry Smith       for (j=0; j<n; j++) {
48715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
48815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
48915b57d14SSatish Balay           barray = v + i*bs2;
49015b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
49115b57d14SSatish Balay           barray = v + j*bs2;
49215b57d14SSatish Balay         } else { /* Here a copy is required */
493ab26458aSBarry Smith           if (roworiented) {
494ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
495ab26458aSBarry Smith           } else {
496ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
497abef11f7SSatish Balay           }
49847513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
49947513183SBarry Smith             for (jj=0; jj<bs; jj++) {
50030793edcSSatish Balay               *barray++  = *value++;
50147513183SBarry Smith             }
50247513183SBarry Smith           }
50330793edcSSatish Balay           barray -=bs2;
50415b57d14SSatish Balay         }
505abef11f7SSatish Balay 
506abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
507abef11f7SSatish Balay           col  = in[j] - cstart;
50893fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
509ab26458aSBarry Smith         }
5105ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
511aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
51229bbc08cSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);}
513ab26458aSBarry Smith #endif
514ab26458aSBarry Smith         else {
515ab26458aSBarry Smith           if (mat->was_assembled) {
516ab26458aSBarry Smith             if (!baij->colmap) {
517ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
518ab26458aSBarry Smith             }
519a5eb4965SSatish Balay 
520aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
521aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
522fa46199cSSatish Balay             { int data;
5230f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
52429bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
525fa46199cSSatish Balay             }
52648e59246SSatish Balay #else
52729bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
528a5eb4965SSatish Balay #endif
52948e59246SSatish Balay #endif
530aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
5310f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
532fa46199cSSatish Balay             col  = (col - 1)/bs;
53348e59246SSatish Balay #else
534a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
53548e59246SSatish Balay #endif
536ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
537ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
538ab26458aSBarry Smith               col =  in[j];
539ab26458aSBarry Smith             }
540ab26458aSBarry Smith           }
541ab26458aSBarry Smith           else col = in[j];
54293fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
543ab26458aSBarry Smith         }
544ab26458aSBarry Smith       }
545d64ed03dSBarry Smith     } else {
546ab26458aSBarry Smith       if (!baij->donotstash) {
547ff2fd236SBarry Smith         if (roworiented) {
5486fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
549ff2fd236SBarry Smith         } else {
5506fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
551ff2fd236SBarry Smith         }
552abef11f7SSatish Balay       }
553ab26458aSBarry Smith     }
554ab26458aSBarry Smith   }
5553a40ed3dSBarry Smith   PetscFunctionReturn(0);
556ab26458aSBarry Smith }
5576fa18ffdSBarry Smith 
5580bdbc534SSatish Balay #define HASH_KEY 0.6180339887
559c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
5606fa18ffdSBarry Smith /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
561c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5625615d1e5SSatish Balay #undef __FUNC__
563b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ_HT_MatScalar"
5646fa18ffdSBarry Smith int MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
5650bdbc534SSatish Balay {
5660bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
567273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
5680bdbc534SSatish Balay   int         ierr,i,j,row,col;
569273d9f13SBarry Smith   int         rstart_orig=baij->rstart_bs;
570c2760754SSatish Balay   int         rend_orig=baij->rend_bs,Nbs=baij->Nbs;
571c2760754SSatish Balay   int         h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx;
572329f5518SBarry Smith   PetscReal   tmp;
5733eda8832SBarry Smith   MatScalar   **HD = baij->hd,value;
574aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
5754a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5764a15367fSSatish Balay #endif
5770bdbc534SSatish Balay 
5780bdbc534SSatish Balay   PetscFunctionBegin;
5790bdbc534SSatish Balay 
5800bdbc534SSatish Balay   for (i=0; i<m; i++) {
581aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
58229bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
583273d9f13SBarry Smith     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
5840bdbc534SSatish Balay #endif
5850bdbc534SSatish Balay       row = im[i];
586c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5870bdbc534SSatish Balay       for (j=0; j<n; j++) {
5880bdbc534SSatish Balay         col = in[j];
5896fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
5900bdbc534SSatish Balay         /* Look up into the Hash Table */
591c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
592c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5930bdbc534SSatish Balay 
594c2760754SSatish Balay 
595c2760754SSatish Balay         idx = h1;
596aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
597187ce0cbSSatish Balay         insert_ct++;
598187ce0cbSSatish Balay         total_ct++;
599187ce0cbSSatish Balay         if (HT[idx] != key) {
600187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
601187ce0cbSSatish Balay           if (idx == size) {
602187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
603187ce0cbSSatish Balay             if (idx == h1) {
60429bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
605187ce0cbSSatish Balay             }
606187ce0cbSSatish Balay           }
607187ce0cbSSatish Balay         }
608187ce0cbSSatish Balay #else
609c2760754SSatish Balay         if (HT[idx] != key) {
610c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
611c2760754SSatish Balay           if (idx == size) {
612c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
613c2760754SSatish Balay             if (idx == h1) {
61429bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
615c2760754SSatish Balay             }
616c2760754SSatish Balay           }
617c2760754SSatish Balay         }
618187ce0cbSSatish Balay #endif
619c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
620c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
621c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
6220bdbc534SSatish Balay       }
6230bdbc534SSatish Balay     } else {
6240bdbc534SSatish Balay       if (!baij->donotstash) {
625ff2fd236SBarry Smith         if (roworiented) {
6268798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
627ff2fd236SBarry Smith         } else {
6288798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
6290bdbc534SSatish Balay         }
6300bdbc534SSatish Balay       }
6310bdbc534SSatish Balay     }
6320bdbc534SSatish Balay   }
633aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
634187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
635187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
636187ce0cbSSatish Balay #endif
6370bdbc534SSatish Balay   PetscFunctionReturn(0);
6380bdbc534SSatish Balay }
6390bdbc534SSatish Balay 
6400bdbc534SSatish Balay #undef __FUNC__
641b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar"
6426fa18ffdSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
6430bdbc534SSatish Balay {
6440bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
645273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
6468798bf22SSatish Balay   int         ierr,i,j,ii,jj,row,col;
647273d9f13SBarry Smith   int         rstart=baij->rstart ;
648b4cc0f5aSSatish Balay   int         rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2;
649c2760754SSatish Balay   int         h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
650329f5518SBarry Smith   PetscReal   tmp;
6513eda8832SBarry Smith   MatScalar   **HD = baij->hd,*baij_a;
6526fa18ffdSBarry Smith   MatScalar   *v_t,*value;
653aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
6544a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
6554a15367fSSatish Balay #endif
6560bdbc534SSatish Balay 
657d0a41580SSatish Balay   PetscFunctionBegin;
658d0a41580SSatish Balay 
6590bdbc534SSatish Balay   if (roworiented) {
6600bdbc534SSatish Balay     stepval = (n-1)*bs;
6610bdbc534SSatish Balay   } else {
6620bdbc534SSatish Balay     stepval = (m-1)*bs;
6630bdbc534SSatish Balay   }
6640bdbc534SSatish Balay   for (i=0; i<m; i++) {
665aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
66629bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
66729bbc08cSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
6680bdbc534SSatish Balay #endif
6690bdbc534SSatish Balay     row   = im[i];
670187ce0cbSSatish Balay     v_t   = v + i*bs2;
671c2760754SSatish Balay     if (row >= rstart && row < rend) {
6720bdbc534SSatish Balay       for (j=0; j<n; j++) {
6730bdbc534SSatish Balay         col = in[j];
6740bdbc534SSatish Balay 
6750bdbc534SSatish Balay         /* Look up into the Hash Table */
676c2760754SSatish Balay         key = row*Nbs+col+1;
677c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6780bdbc534SSatish Balay 
679c2760754SSatish Balay         idx = h1;
680aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
681187ce0cbSSatish Balay         total_ct++;
682187ce0cbSSatish Balay         insert_ct++;
683187ce0cbSSatish Balay        if (HT[idx] != key) {
684187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
685187ce0cbSSatish Balay           if (idx == size) {
686187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
687187ce0cbSSatish Balay             if (idx == h1) {
68829bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
689187ce0cbSSatish Balay             }
690187ce0cbSSatish Balay           }
691187ce0cbSSatish Balay         }
692187ce0cbSSatish Balay #else
693c2760754SSatish Balay         if (HT[idx] != key) {
694c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
695c2760754SSatish Balay           if (idx == size) {
696c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
697c2760754SSatish Balay             if (idx == h1) {
69829bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
699c2760754SSatish Balay             }
700c2760754SSatish Balay           }
701c2760754SSatish Balay         }
702187ce0cbSSatish Balay #endif
703c2760754SSatish Balay         baij_a = HD[idx];
7040bdbc534SSatish Balay         if (roworiented) {
705c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
706187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
707187ce0cbSSatish Balay           value = v_t;
708187ce0cbSSatish Balay           v_t  += bs;
709fef45726SSatish Balay           if (addv == ADD_VALUES) {
710c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
711c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
712fef45726SSatish Balay                 baij_a[jj]  += *value++;
713b4cc0f5aSSatish Balay               }
714b4cc0f5aSSatish Balay             }
715fef45726SSatish Balay           } else {
716c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
717c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
718fef45726SSatish Balay                 baij_a[jj]  = *value++;
719fef45726SSatish Balay               }
720fef45726SSatish Balay             }
721fef45726SSatish Balay           }
7220bdbc534SSatish Balay         } else {
7230bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
724fef45726SSatish Balay           if (addv == ADD_VALUES) {
725b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
7260bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
727fef45726SSatish Balay                 baij_a[jj]  += *value++;
728fef45726SSatish Balay               }
729fef45726SSatish Balay             }
730fef45726SSatish Balay           } else {
731fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
732fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
733fef45726SSatish Balay                 baij_a[jj]  = *value++;
734fef45726SSatish Balay               }
735b4cc0f5aSSatish Balay             }
7360bdbc534SSatish Balay           }
7370bdbc534SSatish Balay         }
7380bdbc534SSatish Balay       }
7390bdbc534SSatish Balay     } else {
7400bdbc534SSatish Balay       if (!baij->donotstash) {
7410bdbc534SSatish Balay         if (roworiented) {
7428798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
7430bdbc534SSatish Balay         } else {
7448798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
7450bdbc534SSatish Balay         }
7460bdbc534SSatish Balay       }
7470bdbc534SSatish Balay     }
7480bdbc534SSatish Balay   }
749aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
750187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
751187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
752187ce0cbSSatish Balay #endif
7530bdbc534SSatish Balay   PetscFunctionReturn(0);
7540bdbc534SSatish Balay }
755133cdb44SSatish Balay 
7560bdbc534SSatish Balay #undef __FUNC__
757b0a32e0cSBarry Smith #define __FUNC__ "MatGetValues_MPIBAIJ"
758ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
759d6de1c52SSatish Balay {
760d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
761d6de1c52SSatish Balay   int        bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
76248e59246SSatish Balay   int        bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
763d6de1c52SSatish Balay 
764133cdb44SSatish Balay   PetscFunctionBegin;
765d6de1c52SSatish Balay   for (i=0; i<m; i++) {
76629bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
767273d9f13SBarry Smith     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
768d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
769d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
770d6de1c52SSatish Balay       for (j=0; j<n; j++) {
77129bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
772273d9f13SBarry Smith         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
773d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
774d6de1c52SSatish Balay           col = idxn[j] - bscstart;
77598dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
776d64ed03dSBarry Smith         } else {
777905e6a2fSBarry Smith           if (!baij->colmap) {
778905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
779905e6a2fSBarry Smith           }
780aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7810f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
782fa46199cSSatish Balay           data --;
78348e59246SSatish Balay #else
78448e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
78548e59246SSatish Balay #endif
78648e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
787d9d09a02SSatish Balay           else {
78848e59246SSatish Balay             col  = data + idxn[j]%bs;
78998dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
790d6de1c52SSatish Balay           }
791d6de1c52SSatish Balay         }
792d6de1c52SSatish Balay       }
793d64ed03dSBarry Smith     } else {
79429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
795d6de1c52SSatish Balay     }
796d6de1c52SSatish Balay   }
7973a40ed3dSBarry Smith  PetscFunctionReturn(0);
798d6de1c52SSatish Balay }
799d6de1c52SSatish Balay 
8005615d1e5SSatish Balay #undef __FUNC__
801b0a32e0cSBarry Smith #define __FUNC__ "MatNorm_MPIBAIJ"
802329f5518SBarry Smith int MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *norm)
803d6de1c52SSatish Balay {
804d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
805d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
806acdf5bf4SSatish Balay   int        ierr,i,bs2=baij->bs2;
807329f5518SBarry Smith   PetscReal  sum = 0.0;
8083eda8832SBarry Smith   MatScalar  *v;
809d6de1c52SSatish Balay 
810d64ed03dSBarry Smith   PetscFunctionBegin;
811d6de1c52SSatish Balay   if (baij->size == 1) {
812d6de1c52SSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
813d6de1c52SSatish Balay   } else {
814d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
815d6de1c52SSatish Balay       v = amat->a;
816d6de1c52SSatish Balay       for (i=0; i<amat->nz*bs2; i++) {
817aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
818329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
819d6de1c52SSatish Balay #else
820d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
821d6de1c52SSatish Balay #endif
822d6de1c52SSatish Balay       }
823d6de1c52SSatish Balay       v = bmat->a;
824d6de1c52SSatish Balay       for (i=0; i<bmat->nz*bs2; i++) {
825aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
826329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
827d6de1c52SSatish Balay #else
828d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
829d6de1c52SSatish Balay #endif
830d6de1c52SSatish Balay       }
831ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
832d6de1c52SSatish Balay       *norm = sqrt(*norm);
833d64ed03dSBarry Smith     } else {
83429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
835d6de1c52SSatish Balay     }
836d64ed03dSBarry Smith   }
8373a40ed3dSBarry Smith   PetscFunctionReturn(0);
838d6de1c52SSatish Balay }
83957b952d6SSatish Balay 
840bd7f49f5SSatish Balay 
841fef45726SSatish Balay /*
842fef45726SSatish Balay   Creates the hash table, and sets the table
843fef45726SSatish Balay   This table is created only once.
844fef45726SSatish Balay   If new entried need to be added to the matrix
845fef45726SSatish Balay   then the hash table has to be destroyed and
846fef45726SSatish Balay   recreated.
847fef45726SSatish Balay */
848fef45726SSatish Balay #undef __FUNC__
849b0a32e0cSBarry Smith #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private"
850329f5518SBarry Smith int MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
851596b8d2eSBarry Smith {
852596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
853596b8d2eSBarry Smith   Mat         A = baij->A,B=baij->B;
854596b8d2eSBarry Smith   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
8550bdbc534SSatish Balay   int         i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
856549d3d68SSatish Balay   int         size,bs2=baij->bs2,rstart=baij->rstart,ierr;
857187ce0cbSSatish Balay   int         cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs;
858fef45726SSatish Balay   int         *HT,key;
8593eda8832SBarry Smith   MatScalar   **HD;
860329f5518SBarry Smith   PetscReal   tmp;
861aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
8624a15367fSSatish Balay   int         ct=0,max=0;
8634a15367fSSatish Balay #endif
864fef45726SSatish Balay 
865d64ed03dSBarry Smith   PetscFunctionBegin;
8660bdbc534SSatish Balay   baij->ht_size=(int)(factor*nz);
8670bdbc534SSatish Balay   size = baij->ht_size;
868fef45726SSatish Balay 
8690bdbc534SSatish Balay   if (baij->ht) {
8700bdbc534SSatish Balay     PetscFunctionReturn(0);
871596b8d2eSBarry Smith   }
8720bdbc534SSatish Balay 
873fef45726SSatish Balay   /* Allocate Memory for Hash Table */
874b0a32e0cSBarry Smith   ierr     = PetscMalloc((size)*(sizeof(int)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
875b9e4cc15SSatish Balay   baij->ht = (int*)(baij->hd + size);
876b9e4cc15SSatish Balay   HD       = baij->hd;
877a07cd24cSSatish Balay   HT       = baij->ht;
878b9e4cc15SSatish Balay 
879b9e4cc15SSatish Balay 
880549d3d68SSatish Balay   ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr);
8810bdbc534SSatish Balay 
882596b8d2eSBarry Smith 
883596b8d2eSBarry Smith   /* Loop Over A */
8840bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
885596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8860bdbc534SSatish Balay       row = i+rstart;
8870bdbc534SSatish Balay       col = aj[j]+cstart;
888596b8d2eSBarry Smith 
889187ce0cbSSatish Balay       key = row*Nbs + col + 1;
890c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8910bdbc534SSatish Balay       for (k=0; k<size; k++){
8920bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
8930bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8940bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
895596b8d2eSBarry Smith           break;
896aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
897187ce0cbSSatish Balay         } else {
898187ce0cbSSatish Balay           ct++;
899187ce0cbSSatish Balay #endif
900596b8d2eSBarry Smith         }
901187ce0cbSSatish Balay       }
902aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
903187ce0cbSSatish Balay       if (k> max) max = k;
904187ce0cbSSatish Balay #endif
905596b8d2eSBarry Smith     }
906596b8d2eSBarry Smith   }
907596b8d2eSBarry Smith   /* Loop Over B */
9080bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
909596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
9100bdbc534SSatish Balay       row = i+rstart;
9110bdbc534SSatish Balay       col = garray[bj[j]];
912187ce0cbSSatish Balay       key = row*Nbs + col + 1;
913c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9140bdbc534SSatish Balay       for (k=0; k<size; k++){
9150bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
9160bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9170bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
918596b8d2eSBarry Smith           break;
919aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
920187ce0cbSSatish Balay         } else {
921187ce0cbSSatish Balay           ct++;
922187ce0cbSSatish Balay #endif
923596b8d2eSBarry Smith         }
924187ce0cbSSatish Balay       }
925aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
926187ce0cbSSatish Balay       if (k> max) max = k;
927187ce0cbSSatish Balay #endif
928596b8d2eSBarry Smith     }
929596b8d2eSBarry Smith   }
930596b8d2eSBarry Smith 
931596b8d2eSBarry Smith   /* Print Summary */
932aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
933c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
934596b8d2eSBarry Smith     if (HT[i]) {j++;}
935c38d4ed2SBarry Smith   }
936b0a32e0cSBarry Smith   PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(j== 0)? 0.0:((PetscReal)(ct+j))/j,max);
937187ce0cbSSatish Balay #endif
9383a40ed3dSBarry Smith   PetscFunctionReturn(0);
939596b8d2eSBarry Smith }
94057b952d6SSatish Balay 
941bbb85fb3SSatish Balay #undef __FUNC__
942b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyBegin_MPIBAIJ"
943bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
944bbb85fb3SSatish Balay {
945bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
946ff2fd236SBarry Smith   int         ierr,nstash,reallocs;
947bbb85fb3SSatish Balay   InsertMode  addv;
948bbb85fb3SSatish Balay 
949bbb85fb3SSatish Balay   PetscFunctionBegin;
950bbb85fb3SSatish Balay   if (baij->donotstash) {
951bbb85fb3SSatish Balay     PetscFunctionReturn(0);
952bbb85fb3SSatish Balay   }
953bbb85fb3SSatish Balay 
954bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
955bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
956bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
95729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
958bbb85fb3SSatish Balay   }
959bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
960bbb85fb3SSatish Balay 
9618798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
9628798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
9638798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
964b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
96546680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
966b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
967bbb85fb3SSatish Balay   PetscFunctionReturn(0);
968bbb85fb3SSatish Balay }
969bbb85fb3SSatish Balay 
970bbb85fb3SSatish Balay #undef __FUNC__
971b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyEnd_MPIBAIJ"
972bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
973bbb85fb3SSatish Balay {
974bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data;
975a2d1c673SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data;
976a2d1c673SSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
9777c922b88SBarry Smith   int         *row,*col,other_disassembled;
9787c922b88SBarry Smith   PetscTruth  r1,r2,r3;
9793eda8832SBarry Smith   MatScalar   *val;
980bbb85fb3SSatish Balay   InsertMode  addv = mat->insertmode;
981bbb85fb3SSatish Balay 
982bbb85fb3SSatish Balay   PetscFunctionBegin;
983bbb85fb3SSatish Balay   if (!baij->donotstash) {
984a2d1c673SSatish Balay     while (1) {
9858798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
986a2d1c673SSatish Balay       if (!flg) break;
987a2d1c673SSatish Balay 
988bbb85fb3SSatish Balay       for (i=0; i<n;) {
989bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
990bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
991bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
992bbb85fb3SSatish Balay         else       ncols = n-i;
993bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
99493fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
995bbb85fb3SSatish Balay         i = j;
996bbb85fb3SSatish Balay       }
997bbb85fb3SSatish Balay     }
9988798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
999a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
1000a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
1001a2d1c673SSatish Balay        restore the original flags */
1002a2d1c673SSatish Balay     r1 = baij->roworiented;
1003a2d1c673SSatish Balay     r2 = a->roworiented;
1004a2d1c673SSatish Balay     r3 = b->roworiented;
10057c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
10067c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
10077c922b88SBarry Smith     b->roworiented    = PETSC_FALSE;
1008a2d1c673SSatish Balay     while (1) {
10098798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1010a2d1c673SSatish Balay       if (!flg) break;
1011a2d1c673SSatish Balay 
1012a2d1c673SSatish Balay       for (i=0; i<n;) {
1013a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1014a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1015a2d1c673SSatish Balay         if (j < n) ncols = j-i;
1016a2d1c673SSatish Balay         else       ncols = n-i;
101793fea6afSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
1018a2d1c673SSatish Balay         i = j;
1019a2d1c673SSatish Balay       }
1020a2d1c673SSatish Balay     }
10218798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
1022a2d1c673SSatish Balay     baij->roworiented = r1;
1023a2d1c673SSatish Balay     a->roworiented    = r2;
1024a2d1c673SSatish Balay     b->roworiented    = r3;
1025bbb85fb3SSatish Balay   }
1026bbb85fb3SSatish Balay 
1027bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
1028bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
1029bbb85fb3SSatish Balay 
1030bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
1031bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
1032bbb85fb3SSatish Balay   /*
1033bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
1034bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
1035bbb85fb3SSatish Balay   */
1036bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
1037bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
1038bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
1039bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
1040bbb85fb3SSatish Balay     }
1041bbb85fb3SSatish Balay   }
1042bbb85fb3SSatish Balay 
1043bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
1044bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
1045bbb85fb3SSatish Balay   }
1046bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
1047bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
1048bbb85fb3SSatish Balay 
1049aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
1050bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
1051b0a32e0cSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct);
1052bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1053bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1054bbb85fb3SSatish Balay   }
1055bbb85fb3SSatish Balay #endif
1056bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1057bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
1058bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1059bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1060bbb85fb3SSatish Balay   }
1061bbb85fb3SSatish Balay 
1062606d414cSSatish Balay   if (baij->rowvalues) {
1063606d414cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
1064606d414cSSatish Balay     baij->rowvalues = 0;
1065606d414cSSatish Balay   }
1066bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1067bbb85fb3SSatish Balay }
106857b952d6SSatish Balay 
10695615d1e5SSatish Balay #undef __FUNC__
1070b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
1071b0a32e0cSBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
107257b952d6SSatish Balay {
107357b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1074fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
10756831982aSBarry Smith   PetscTruth        isascii,isdraw;
1076b0a32e0cSBarry Smith   PetscViewer       sviewer;
1077f3ef73ceSBarry Smith   PetscViewerFormat format;
107857b952d6SSatish Balay 
1079d64ed03dSBarry Smith   PetscFunctionBegin;
1080b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
1081fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
10820f5bd95cSBarry Smith   if (isascii) {
1083b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1084fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_INFO_LONG) {
10854e220ebcSLois Curfman McInnes       MatInfo info;
1086d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
1087d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
1088b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
1089273d9f13SBarry Smith               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
10906831982aSBarry Smith               baij->bs,(int)info.memory);CHKERRQ(ierr);
1091d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
1092b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
1093d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
1094b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
1095b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
109657b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
10973a40ed3dSBarry Smith       PetscFunctionReturn(0);
1098fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1099b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
11003a40ed3dSBarry Smith       PetscFunctionReturn(0);
110157b952d6SSatish Balay     }
110257b952d6SSatish Balay   }
110357b952d6SSatish Balay 
11040f5bd95cSBarry Smith   if (isdraw) {
1105b0a32e0cSBarry Smith     PetscDraw       draw;
110657b952d6SSatish Balay     PetscTruth isnull;
1107b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1108b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
110957b952d6SSatish Balay   }
111057b952d6SSatish Balay 
111157b952d6SSatish Balay   if (size == 1) {
111257b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1113d64ed03dSBarry Smith   } else {
111457b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
111557b952d6SSatish Balay     Mat         A;
111657b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1117273d9f13SBarry Smith     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
11183eda8832SBarry Smith     MatScalar   *a;
111957b952d6SSatish Balay 
112057b952d6SSatish Balay     if (!rank) {
112155843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
1122d64ed03dSBarry Smith     } else {
112355843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
112457b952d6SSatish Balay     }
1125b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
112657b952d6SSatish Balay 
112757b952d6SSatish Balay     /* copy over the A part */
112857b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
112957b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
113082502324SSatish Balay     ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
113157b952d6SSatish Balay 
113257b952d6SSatish Balay     for (i=0; i<mbs; i++) {
113357b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
113457b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
113557b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
113657b952d6SSatish Balay         col = (baij->cstart+aj[j])*bs;
113757b952d6SSatish Balay         for (k=0; k<bs; k++) {
113893fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1139cee3aa6bSSatish Balay           col++; a += bs;
114057b952d6SSatish Balay         }
114157b952d6SSatish Balay       }
114257b952d6SSatish Balay     }
114357b952d6SSatish Balay     /* copy over the B part */
114457b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
114557b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
114657b952d6SSatish Balay     for (i=0; i<mbs; i++) {
114757b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
114857b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
114957b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
115057b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
115157b952d6SSatish Balay         for (k=0; k<bs; k++) {
115293fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1153cee3aa6bSSatish Balay           col++; a += bs;
115457b952d6SSatish Balay         }
115557b952d6SSatish Balay       }
115657b952d6SSatish Balay     }
1157606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
11586d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11596d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
116055843e3eSBarry Smith     /*
116155843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1162b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
116355843e3eSBarry Smith     */
1164b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1165f14a1c24SBarry Smith     if (!rank) {
11666831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
116757b952d6SSatish Balay     }
1168b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
116957b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
117057b952d6SSatish Balay   }
11713a40ed3dSBarry Smith   PetscFunctionReturn(0);
117257b952d6SSatish Balay }
117357b952d6SSatish Balay 
11745615d1e5SSatish Balay #undef __FUNC__
1175b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPIBAIJ"
1176b0a32e0cSBarry Smith int MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
117757b952d6SSatish Balay {
117857b952d6SSatish Balay   int        ierr;
11796831982aSBarry Smith   PetscTruth isascii,isdraw,issocket,isbinary;
118057b952d6SSatish Balay 
1181d64ed03dSBarry Smith   PetscFunctionBegin;
1182b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
1183fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1184b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1185fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
11860f5bd95cSBarry Smith   if (isascii || isdraw || issocket || isbinary) {
11877b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
11885cd90555SBarry Smith   } else {
118929bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
119057b952d6SSatish Balay   }
11913a40ed3dSBarry Smith   PetscFunctionReturn(0);
119257b952d6SSatish Balay }
119357b952d6SSatish Balay 
11945615d1e5SSatish Balay #undef __FUNC__
1195b0a32e0cSBarry Smith #define __FUNC__ "MatDestroy_MPIBAIJ"
1196e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat)
119779bdfe76SSatish Balay {
119879bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
119979bdfe76SSatish Balay   int         ierr;
120079bdfe76SSatish Balay 
1201d64ed03dSBarry Smith   PetscFunctionBegin;
1202aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1203b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
120479bdfe76SSatish Balay #endif
12058798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12068798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
1207606d414cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
120879bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
120979bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1210aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12110f5bd95cSBarry Smith   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
121248e59246SSatish Balay #else
1213606d414cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
121448e59246SSatish Balay #endif
1215606d414cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
1216606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1217606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1218606d414cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
1219606d414cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
1220606d414cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
12216fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
12226fa18ffdSBarry Smith   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
12236fa18ffdSBarry Smith #endif
1224606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
12253a40ed3dSBarry Smith   PetscFunctionReturn(0);
122679bdfe76SSatish Balay }
122779bdfe76SSatish Balay 
12285615d1e5SSatish Balay #undef __FUNC__
1229b0a32e0cSBarry Smith #define __FUNC__ "MatMult_MPIBAIJ"
1230ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1231cee3aa6bSSatish Balay {
1232cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
123347b4a8eaSLois Curfman McInnes   int         ierr,nt;
1234cee3aa6bSSatish Balay 
1235d64ed03dSBarry Smith   PetscFunctionBegin;
1236e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1237273d9f13SBarry Smith   if (nt != A->n) {
123829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
123947b4a8eaSLois Curfman McInnes   }
1240e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1241273d9f13SBarry Smith   if (nt != A->m) {
124229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
124347b4a8eaSLois Curfman McInnes   }
124443a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1245f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
124643a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1247f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
124843a90d84SBarry Smith   ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
12493a40ed3dSBarry Smith   PetscFunctionReturn(0);
1250cee3aa6bSSatish Balay }
1251cee3aa6bSSatish Balay 
12525615d1e5SSatish Balay #undef __FUNC__
1253b0a32e0cSBarry Smith #define __FUNC__ "MatMultAdd_MPIBAIJ"
1254ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1255cee3aa6bSSatish Balay {
1256cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1257cee3aa6bSSatish Balay   int        ierr;
1258d64ed03dSBarry Smith 
1259d64ed03dSBarry Smith   PetscFunctionBegin;
126043a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1261f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
126243a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1263f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12643a40ed3dSBarry Smith   PetscFunctionReturn(0);
1265cee3aa6bSSatish Balay }
1266cee3aa6bSSatish Balay 
12675615d1e5SSatish Balay #undef __FUNC__
1268b0a32e0cSBarry Smith #define __FUNC__ "MatMultTranspose_MPIBAIJ"
12697c922b88SBarry Smith int MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1270cee3aa6bSSatish Balay {
1271cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1272cee3aa6bSSatish Balay   int         ierr;
1273cee3aa6bSSatish Balay 
1274d64ed03dSBarry Smith   PetscFunctionBegin;
1275cee3aa6bSSatish Balay   /* do nondiagonal part */
12767c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1277cee3aa6bSSatish Balay   /* send it on its way */
1278537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1279cee3aa6bSSatish Balay   /* do local part */
12807c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1281cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1282cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1283cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1284639f9d9dSBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
12853a40ed3dSBarry Smith   PetscFunctionReturn(0);
1286cee3aa6bSSatish Balay }
1287cee3aa6bSSatish Balay 
12885615d1e5SSatish Balay #undef __FUNC__
1289b0a32e0cSBarry Smith #define __FUNC__ "MatMultTransposeAdd_MPIBAIJ"
12907c922b88SBarry Smith int MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1291cee3aa6bSSatish Balay {
1292cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1293cee3aa6bSSatish Balay   int         ierr;
1294cee3aa6bSSatish Balay 
1295d64ed03dSBarry Smith   PetscFunctionBegin;
1296cee3aa6bSSatish Balay   /* do nondiagonal part */
12977c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1298cee3aa6bSSatish Balay   /* send it on its way */
1299537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1300cee3aa6bSSatish Balay   /* do local part */
13017c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1302cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1303cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1304cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1305537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
13063a40ed3dSBarry Smith   PetscFunctionReturn(0);
1307cee3aa6bSSatish Balay }
1308cee3aa6bSSatish Balay 
1309cee3aa6bSSatish Balay /*
1310cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1311cee3aa6bSSatish Balay    diagonal block
1312cee3aa6bSSatish Balay */
13135615d1e5SSatish Balay #undef __FUNC__
1314b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonal_MPIBAIJ"
1315ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1316cee3aa6bSSatish Balay {
1317cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
13183a40ed3dSBarry Smith   int         ierr;
1319d64ed03dSBarry Smith 
1320d64ed03dSBarry Smith   PetscFunctionBegin;
1321273d9f13SBarry Smith   if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13223a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13233a40ed3dSBarry Smith   PetscFunctionReturn(0);
1324cee3aa6bSSatish Balay }
1325cee3aa6bSSatish Balay 
13265615d1e5SSatish Balay #undef __FUNC__
1327b0a32e0cSBarry Smith #define __FUNC__ "MatScale_MPIBAIJ"
1328ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A)
1329cee3aa6bSSatish Balay {
1330cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1331cee3aa6bSSatish Balay   int         ierr;
1332d64ed03dSBarry Smith 
1333d64ed03dSBarry Smith   PetscFunctionBegin;
1334cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1335cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
13363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1337cee3aa6bSSatish Balay }
1338026e39d0SSatish Balay 
13395615d1e5SSatish Balay #undef __FUNC__
1340b0a32e0cSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ"
1341ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n)
134257b952d6SSatish Balay {
134357b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data;
1344d64ed03dSBarry Smith 
1345d64ed03dSBarry Smith   PetscFunctionBegin;
1346273d9f13SBarry Smith   if (m) *m = mat->rstart_bs;
1347273d9f13SBarry Smith   if (n) *n = mat->rend_bs;
13483a40ed3dSBarry Smith   PetscFunctionReturn(0);
134957b952d6SSatish Balay }
135057b952d6SSatish Balay 
13515615d1e5SSatish Balay #undef __FUNC__
1352b0a32e0cSBarry Smith #define __FUNC__ "MatGetRow_MPIBAIJ"
1353acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
1354acdf5bf4SSatish Balay {
1355acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data;
1356acdf5bf4SSatish Balay   Scalar     *vworkA,*vworkB,**pvA,**pvB,*v_p;
1357acdf5bf4SSatish Balay   int        bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1358d9d09a02SSatish Balay   int        nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1359d9d09a02SSatish Balay   int        *cmap,*idx_p,cstart = mat->cstart;
1360acdf5bf4SSatish Balay 
1361d64ed03dSBarry Smith   PetscFunctionBegin;
136229bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1363acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1364acdf5bf4SSatish Balay 
1365acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1366acdf5bf4SSatish Balay     /*
1367acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1368acdf5bf4SSatish Balay     */
1369acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1370bd16c2feSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1371bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1372acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1373acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1374acdf5bf4SSatish Balay     }
1375b0a32e0cSBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)),&mat->rowvalues);CHKERRQ(ierr);
1376acdf5bf4SSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1377acdf5bf4SSatish Balay   }
1378acdf5bf4SSatish Balay 
137929bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1380d9d09a02SSatish Balay   lrow = row - brstart;
1381acdf5bf4SSatish Balay 
1382acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1383acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1384acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1385f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1386f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1387acdf5bf4SSatish Balay   nztot = nzA + nzB;
1388acdf5bf4SSatish Balay 
1389acdf5bf4SSatish Balay   cmap  = mat->garray;
1390acdf5bf4SSatish Balay   if (v  || idx) {
1391acdf5bf4SSatish Balay     if (nztot) {
1392acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1393acdf5bf4SSatish Balay       int imark = -1;
1394acdf5bf4SSatish Balay       if (v) {
1395acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1396acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1397d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1398acdf5bf4SSatish Balay           else break;
1399acdf5bf4SSatish Balay         }
1400acdf5bf4SSatish Balay         imark = i;
1401acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1402acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1403acdf5bf4SSatish Balay       }
1404acdf5bf4SSatish Balay       if (idx) {
1405acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1406acdf5bf4SSatish Balay         if (imark > -1) {
1407acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1408bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1409acdf5bf4SSatish Balay           }
1410acdf5bf4SSatish Balay         } else {
1411acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1412d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1413d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1414acdf5bf4SSatish Balay             else break;
1415acdf5bf4SSatish Balay           }
1416acdf5bf4SSatish Balay           imark = i;
1417acdf5bf4SSatish Balay         }
1418d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1419d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1420acdf5bf4SSatish Balay       }
1421d64ed03dSBarry Smith     } else {
1422d212a18eSSatish Balay       if (idx) *idx = 0;
1423d212a18eSSatish Balay       if (v)   *v   = 0;
1424d212a18eSSatish Balay     }
1425acdf5bf4SSatish Balay   }
1426acdf5bf4SSatish Balay   *nz = nztot;
1427f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1428f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14293a40ed3dSBarry Smith   PetscFunctionReturn(0);
1430acdf5bf4SSatish Balay }
1431acdf5bf4SSatish Balay 
14325615d1e5SSatish Balay #undef __FUNC__
1433b0a32e0cSBarry Smith #define __FUNC__ "MatRestoreRow_MPIBAIJ"
1434acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
1435acdf5bf4SSatish Balay {
1436acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1437d64ed03dSBarry Smith 
1438d64ed03dSBarry Smith   PetscFunctionBegin;
1439acdf5bf4SSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
144029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1441acdf5bf4SSatish Balay   }
1442acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1444acdf5bf4SSatish Balay }
1445acdf5bf4SSatish Balay 
14465615d1e5SSatish Balay #undef __FUNC__
1447b0a32e0cSBarry Smith #define __FUNC__ "MatGetBlockSize_MPIBAIJ"
1448ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs)
14495a838052SSatish Balay {
14505a838052SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1451d64ed03dSBarry Smith 
1452d64ed03dSBarry Smith   PetscFunctionBegin;
14535a838052SSatish Balay   *bs = baij->bs;
14543a40ed3dSBarry Smith   PetscFunctionReturn(0);
14555a838052SSatish Balay }
14565a838052SSatish Balay 
14575615d1e5SSatish Balay #undef __FUNC__
1458b0a32e0cSBarry Smith #define __FUNC__ "MatZeroEntries_MPIBAIJ"
1459ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A)
146058667388SSatish Balay {
146158667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data;
146258667388SSatish Balay   int         ierr;
1463d64ed03dSBarry Smith 
1464d64ed03dSBarry Smith   PetscFunctionBegin;
146558667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
146658667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14673a40ed3dSBarry Smith   PetscFunctionReturn(0);
146858667388SSatish Balay }
14690ac07820SSatish Balay 
14705615d1e5SSatish Balay #undef __FUNC__
1471b0a32e0cSBarry Smith #define __FUNC__ "MatGetInfo_MPIBAIJ"
1472ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14730ac07820SSatish Balay {
14744e220ebcSLois Curfman McInnes   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data;
14754e220ebcSLois Curfman McInnes   Mat         A = a->A,B = a->B;
14767d57db60SLois Curfman McInnes   int         ierr;
1477329f5518SBarry Smith   PetscReal   isend[5],irecv[5];
14780ac07820SSatish Balay 
1479d64ed03dSBarry Smith   PetscFunctionBegin;
14804e220ebcSLois Curfman McInnes   info->block_size     = (double)a->bs;
14814e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
14820e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1483de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
14844e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
14850e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1486de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
14870ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14884e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14894e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14904e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14914e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14924e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14930ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1494f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr);
14954e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14964e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14974e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14984e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14994e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15000ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1501f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr);
15024e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15034e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15044e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15054e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15064e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1507d41123aaSBarry Smith   } else {
150829bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
15090ac07820SSatish Balay   }
1510273d9f13SBarry Smith   info->rows_global       = (double)A->M;
1511273d9f13SBarry Smith   info->columns_global    = (double)A->N;
1512273d9f13SBarry Smith   info->rows_local        = (double)A->m;
1513273d9f13SBarry Smith   info->columns_local     = (double)A->N;
15144e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15154e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15164e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15173a40ed3dSBarry Smith   PetscFunctionReturn(0);
15180ac07820SSatish Balay }
15190ac07820SSatish Balay 
15205615d1e5SSatish Balay #undef __FUNC__
1521b0a32e0cSBarry Smith #define __FUNC__ "MatSetOption_MPIBAIJ"
1522ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op)
152358667388SSatish Balay {
152458667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
152598305bb5SBarry Smith   int         ierr;
152658667388SSatish Balay 
1527d64ed03dSBarry Smith   PetscFunctionBegin;
152858667388SSatish Balay   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
152958667388SSatish Balay       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
15306da5968aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED ||
1531c2653b3dSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
15324787f768SSatish Balay       op == MAT_NEW_NONZERO_ALLOCATION_ERR ||
15337c922b88SBarry Smith       op == MAT_KEEP_ZEROED_ROWS ||
15344787f768SSatish Balay       op == MAT_NEW_NONZERO_LOCATION_ERR) {
153598305bb5SBarry Smith         ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
153698305bb5SBarry Smith         ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1537b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
15387c922b88SBarry Smith         a->roworiented = PETSC_TRUE;
153998305bb5SBarry Smith         ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
154098305bb5SBarry Smith         ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1541b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
15426da5968aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
154358667388SSatish Balay              op == MAT_SYMMETRIC ||
154458667388SSatish Balay              op == MAT_STRUCTURALLY_SYMMETRIC ||
1545b51ba29fSSatish Balay              op == MAT_YES_NEW_DIAGONALS ||
154698305bb5SBarry Smith              op == MAT_USE_HASH_TABLE) {
1547b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
154898305bb5SBarry Smith   } else if (op == MAT_COLUMN_ORIENTED) {
15497c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
155098305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
155198305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
15522b362799SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
15537c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
1554d64ed03dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
155529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1556133cdb44SSatish Balay   } else if (op == MAT_USE_HASH_TABLE) {
15577c922b88SBarry Smith     a->ht_flag = PETSC_TRUE;
1558d64ed03dSBarry Smith   } else {
155929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1560d64ed03dSBarry Smith   }
15613a40ed3dSBarry Smith   PetscFunctionReturn(0);
156258667388SSatish Balay }
156358667388SSatish Balay 
15645615d1e5SSatish Balay #undef __FUNC__
1565b0a32e0cSBarry Smith #define __FUNC__ "MatTranspose_MPIBAIJ("
1566ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout)
15670ac07820SSatish Balay {
15680ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data;
15690ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15700ac07820SSatish Balay   Mat         B;
1571273d9f13SBarry Smith   int         ierr,M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col;
15720ac07820SSatish Balay   int         bs=baij->bs,mbs=baij->mbs;
15733eda8832SBarry Smith   MatScalar   *a;
15740ac07820SSatish Balay 
1575d64ed03dSBarry Smith   PetscFunctionBegin;
157629bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1577273d9f13SBarry Smith   ierr = MatCreateMPIBAIJ(A->comm,baij->bs,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr);
15780ac07820SSatish Balay 
15790ac07820SSatish Balay   /* copy over the A part */
15800ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
15810ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
158282502324SSatish Balay   ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
15830ac07820SSatish Balay 
15840ac07820SSatish Balay   for (i=0; i<mbs; i++) {
15850ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15860ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
15870ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15880ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
15890ac07820SSatish Balay       for (k=0; k<bs; k++) {
159093fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15910ac07820SSatish Balay         col++; a += bs;
15920ac07820SSatish Balay       }
15930ac07820SSatish Balay     }
15940ac07820SSatish Balay   }
15950ac07820SSatish Balay   /* copy over the B part */
15960ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15970ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15980ac07820SSatish Balay   for (i=0; i<mbs; i++) {
15990ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
16000ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16010ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16020ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16030ac07820SSatish Balay       for (k=0; k<bs; k++) {
160493fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16050ac07820SSatish Balay         col++; a += bs;
16060ac07820SSatish Balay       }
16070ac07820SSatish Balay     }
16080ac07820SSatish Balay   }
1609606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16100ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16110ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16120ac07820SSatish Balay 
16137c922b88SBarry Smith   if (matout) {
16140ac07820SSatish Balay     *matout = B;
16150ac07820SSatish Balay   } else {
1616273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
16170ac07820SSatish Balay   }
16183a40ed3dSBarry Smith   PetscFunctionReturn(0);
16190ac07820SSatish Balay }
16200e95ebc0SSatish Balay 
16215615d1e5SSatish Balay #undef __FUNC__
1622b0a32e0cSBarry Smith #define __FUNC__ "MatDiagonalScale_MPIBAIJ"
162336c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16240e95ebc0SSatish Balay {
162536c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
162636c4a09eSSatish Balay   Mat         a = baij->A,b = baij->B;
16270e95ebc0SSatish Balay   int         ierr,s1,s2,s3;
16280e95ebc0SSatish Balay 
1629d64ed03dSBarry Smith   PetscFunctionBegin;
163036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
163136c4a09eSSatish Balay   if (rr) {
163236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
163329bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
163436c4a09eSSatish Balay     /* Overlap communication with computation. */
163536c4a09eSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
163636c4a09eSSatish Balay   }
16370e95ebc0SSatish Balay   if (ll) {
16380e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
163929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1640a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
16410e95ebc0SSatish Balay   }
164236c4a09eSSatish Balay   /* scale  the diagonal block */
164336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
164436c4a09eSSatish Balay 
164536c4a09eSSatish Balay   if (rr) {
164636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
164736c4a09eSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1648a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
164936c4a09eSSatish Balay   }
165036c4a09eSSatish Balay 
16513a40ed3dSBarry Smith   PetscFunctionReturn(0);
16520e95ebc0SSatish Balay }
16530e95ebc0SSatish Balay 
16545615d1e5SSatish Balay #undef __FUNC__
1655b0a32e0cSBarry Smith #define __FUNC__ "MatZeroRows_MPIBAIJ"
1656ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag)
16570ac07820SSatish Balay {
16580ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
16590ac07820SSatish Balay   int            i,ierr,N,*rows,*owners = l->rowners,size = l->size;
166035d8aa7fSBarry Smith   int            *procs,*nprocs,j,idx,nsends,*work,row;
16610ac07820SSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
16620ac07820SSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1663a07cd24cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
16640ac07820SSatish Balay   MPI_Comm       comm = A->comm;
16650ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
16660ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
16670ac07820SSatish Balay   IS             istmp;
166835d8aa7fSBarry Smith   PetscTruth     found;
16690ac07820SSatish Balay 
1670d64ed03dSBarry Smith   PetscFunctionBegin;
1671f14a1c24SBarry Smith   ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr);
16720ac07820SSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
16730ac07820SSatish Balay 
16740ac07820SSatish Balay   /*  first count number of contributors to each processor */
167582502324SSatish Balay   ierr  = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr);
1676549d3d68SSatish Balay   ierr  = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
1677549d3d68SSatish Balay   procs = nprocs + size;
1678b0a32e0cSBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/
16790ac07820SSatish Balay   for (i=0; i<N; i++) {
16800ac07820SSatish Balay     idx   = rows[i];
168135d8aa7fSBarry Smith     found = PETSC_FALSE;
16820ac07820SSatish Balay     for (j=0; j<size; j++) {
16830ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
168435d8aa7fSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break;
16850ac07820SSatish Balay       }
16860ac07820SSatish Balay     }
168729bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
16880ac07820SSatish Balay   }
16890ac07820SSatish Balay   nsends = 0;  for (i=0; i<size; i++) { nsends += procs[i];}
16900ac07820SSatish Balay 
16910ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
169282502324SSatish Balay   ierr   = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr);
16936831982aSBarry Smith   ierr   = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr);
16940ac07820SSatish Balay   nmax   = work[rank];
16956831982aSBarry Smith   nrecvs = work[size+rank];
1696606d414cSSatish Balay   ierr   = PetscFree(work);CHKERRQ(ierr);
16970ac07820SSatish Balay 
16980ac07820SSatish Balay   /* post receives:   */
1699b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr);
1700b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
17010ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1702ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
17030ac07820SSatish Balay   }
17040ac07820SSatish Balay 
17050ac07820SSatish Balay   /* do sends:
17060ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
17070ac07820SSatish Balay      the ith processor
17080ac07820SSatish Balay   */
1709b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr);
1710b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1711b0a32e0cSBarry Smith   ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr);
17120ac07820SSatish Balay   starts[0]  = 0;
17130ac07820SSatish Balay   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
17140ac07820SSatish Balay   for (i=0; i<N; i++) {
17150ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
17160ac07820SSatish Balay   }
17176831982aSBarry Smith   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
17180ac07820SSatish Balay 
17190ac07820SSatish Balay   starts[0] = 0;
17200ac07820SSatish Balay   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
17210ac07820SSatish Balay   count = 0;
17220ac07820SSatish Balay   for (i=0; i<size; i++) {
17230ac07820SSatish Balay     if (procs[i]) {
1724ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
17250ac07820SSatish Balay     }
17260ac07820SSatish Balay   }
1727606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
17280ac07820SSatish Balay 
17290ac07820SSatish Balay   base = owners[rank]*bs;
17300ac07820SSatish Balay 
17310ac07820SSatish Balay   /*  wait on receives */
1732b0a32e0cSBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr);
17330ac07820SSatish Balay   source = lens + nrecvs;
17340ac07820SSatish Balay   count  = nrecvs; slen = 0;
17350ac07820SSatish Balay   while (count) {
1736ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
17370ac07820SSatish Balay     /* unpack receives into our local space */
1738ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
17390ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
17400ac07820SSatish Balay     lens[imdex]    = n;
17410ac07820SSatish Balay     slen          += n;
17420ac07820SSatish Balay     count--;
17430ac07820SSatish Balay   }
1744606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
17450ac07820SSatish Balay 
17460ac07820SSatish Balay   /* move the data into the send scatter */
1747b0a32e0cSBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr);
17480ac07820SSatish Balay   count = 0;
17490ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
17500ac07820SSatish Balay     values = rvalues + i*nmax;
17510ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
17520ac07820SSatish Balay       lrows[count++] = values[j] - base;
17530ac07820SSatish Balay     }
17540ac07820SSatish Balay   }
1755606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1756606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1757606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1758606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
17590ac07820SSatish Balay 
17600ac07820SSatish Balay   /* actually zap the local rows */
1761029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
1762b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
1763a07cd24cSSatish Balay 
176472dacd9aSBarry Smith   /*
176572dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
176672dacd9aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
176772dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
176872dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
176972dacd9aSBarry Smith 
177072dacd9aSBarry Smith        Contributed by: Mathew Knepley
177172dacd9aSBarry Smith   */
17729c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
17736fa18ffdSBarry Smith   ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr);
17749c957beeSSatish Balay   if (diag && (l->A->M == l->A->N)) {
17756fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr);
17769c957beeSSatish Balay   } else if (diag) {
17776fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1778fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
177929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1780fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
17816525c446SSatish Balay     }
1782a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1783a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
17843f11ea53SBarry Smith       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1785a07cd24cSSatish Balay     }
1786a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1787a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17889c957beeSSatish Balay   } else {
17896fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1790a07cd24cSSatish Balay   }
17919c957beeSSatish Balay 
17929c957beeSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1793606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1794a07cd24cSSatish Balay 
17950ac07820SSatish Balay   /* wait on sends */
17960ac07820SSatish Balay   if (nsends) {
179782502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1798ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1799606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
18000ac07820SSatish Balay   }
1801606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1802606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
18030ac07820SSatish Balay 
18043a40ed3dSBarry Smith   PetscFunctionReturn(0);
18050ac07820SSatish Balay }
180672dacd9aSBarry Smith 
18075615d1e5SSatish Balay #undef __FUNC__
1808b0a32e0cSBarry Smith #define __FUNC__ "MatPrintHelp_MPIBAIJ"
1809ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A)
1810ba4ca20aSSatish Balay {
1811ba4ca20aSSatish Balay   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*)A->data;
181225fdafccSSatish Balay   MPI_Comm    comm = A->comm;
1813133cdb44SSatish Balay   static int  called = 0;
18143a40ed3dSBarry Smith   int         ierr;
1815ba4ca20aSSatish Balay 
1816d64ed03dSBarry Smith   PetscFunctionBegin;
18173a40ed3dSBarry Smith   if (!a->rank) {
18183a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
181925fdafccSSatish Balay   }
182025fdafccSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1821d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1822d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
18233a40ed3dSBarry Smith   PetscFunctionReturn(0);
1824ba4ca20aSSatish Balay }
18250ac07820SSatish Balay 
18265615d1e5SSatish Balay #undef __FUNC__
1827b0a32e0cSBarry Smith #define __FUNC__ "MatSetUnfactored_MPIBAIJ"
1828ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A)
1829bb5a7306SBarry Smith {
1830bb5a7306SBarry Smith   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*)A->data;
1831bb5a7306SBarry Smith   int         ierr;
1832d64ed03dSBarry Smith 
1833d64ed03dSBarry Smith   PetscFunctionBegin;
1834bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1836bb5a7306SBarry Smith }
1837bb5a7306SBarry Smith 
18382e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
18390ac07820SSatish Balay 
18407fc3c18eSBarry Smith #undef __FUNC__
1841b0a32e0cSBarry Smith #define __FUNC__ "MatEqual_MPIBAIJ"
18427fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
18437fc3c18eSBarry Smith {
18447fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18457fc3c18eSBarry Smith   Mat         a,b,c,d;
18467fc3c18eSBarry Smith   PetscTruth  flg;
18477fc3c18eSBarry Smith   int         ierr;
18487fc3c18eSBarry Smith 
18497fc3c18eSBarry Smith   PetscFunctionBegin;
1850273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg);CHKERRQ(ierr);
1851273d9f13SBarry Smith   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
18527fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18537fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18547fc3c18eSBarry Smith 
18557fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
18567fc3c18eSBarry Smith   if (flg == PETSC_TRUE) {
18577fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18587fc3c18eSBarry Smith   }
18597fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
18607fc3c18eSBarry Smith   PetscFunctionReturn(0);
18617fc3c18eSBarry Smith }
18627fc3c18eSBarry Smith 
1863273d9f13SBarry Smith 
1864273d9f13SBarry Smith #undef __FUNC__
1865b0a32e0cSBarry Smith #define __FUNC__ "MatSetUpPreallocation_MPIBAIJ"
1866273d9f13SBarry Smith int MatSetUpPreallocation_MPIBAIJ(Mat A)
1867273d9f13SBarry Smith {
1868273d9f13SBarry Smith   int        ierr;
1869273d9f13SBarry Smith 
1870273d9f13SBarry Smith   PetscFunctionBegin;
1871273d9f13SBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1872273d9f13SBarry Smith   PetscFunctionReturn(0);
1873273d9f13SBarry Smith }
1874273d9f13SBarry Smith 
187579bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1876cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1877cc2dc46cSBarry Smith   MatSetValues_MPIBAIJ,
1878cc2dc46cSBarry Smith   MatGetRow_MPIBAIJ,
1879cc2dc46cSBarry Smith   MatRestoreRow_MPIBAIJ,
1880cc2dc46cSBarry Smith   MatMult_MPIBAIJ,
1881cc2dc46cSBarry Smith   MatMultAdd_MPIBAIJ,
18827c922b88SBarry Smith   MatMultTranspose_MPIBAIJ,
18837c922b88SBarry Smith   MatMultTransposeAdd_MPIBAIJ,
1884cc2dc46cSBarry Smith   0,
1885cc2dc46cSBarry Smith   0,
1886cc2dc46cSBarry Smith   0,
1887cc2dc46cSBarry Smith   0,
1888cc2dc46cSBarry Smith   0,
1889cc2dc46cSBarry Smith   0,
1890cc2dc46cSBarry Smith   0,
1891cc2dc46cSBarry Smith   MatTranspose_MPIBAIJ,
1892cc2dc46cSBarry Smith   MatGetInfo_MPIBAIJ,
18937fc3c18eSBarry Smith   MatEqual_MPIBAIJ,
1894cc2dc46cSBarry Smith   MatGetDiagonal_MPIBAIJ,
1895cc2dc46cSBarry Smith   MatDiagonalScale_MPIBAIJ,
1896cc2dc46cSBarry Smith   MatNorm_MPIBAIJ,
1897cc2dc46cSBarry Smith   MatAssemblyBegin_MPIBAIJ,
1898cc2dc46cSBarry Smith   MatAssemblyEnd_MPIBAIJ,
1899cc2dc46cSBarry Smith   0,
1900cc2dc46cSBarry Smith   MatSetOption_MPIBAIJ,
1901cc2dc46cSBarry Smith   MatZeroEntries_MPIBAIJ,
1902cc2dc46cSBarry Smith   MatZeroRows_MPIBAIJ,
1903cc2dc46cSBarry Smith   0,
1904cc2dc46cSBarry Smith   0,
1905cc2dc46cSBarry Smith   0,
1906cc2dc46cSBarry Smith   0,
1907273d9f13SBarry Smith   MatSetUpPreallocation_MPIBAIJ,
1908273d9f13SBarry Smith   0,
1909cc2dc46cSBarry Smith   MatGetOwnershipRange_MPIBAIJ,
1910cc2dc46cSBarry Smith   0,
1911cc2dc46cSBarry Smith   0,
1912cc2dc46cSBarry Smith   0,
1913cc2dc46cSBarry Smith   0,
19142e8a6d31SBarry Smith   MatDuplicate_MPIBAIJ,
1915cc2dc46cSBarry Smith   0,
1916cc2dc46cSBarry Smith   0,
1917cc2dc46cSBarry Smith   0,
1918cc2dc46cSBarry Smith   0,
1919cc2dc46cSBarry Smith   0,
1920cc2dc46cSBarry Smith   MatGetSubMatrices_MPIBAIJ,
1921cc2dc46cSBarry Smith   MatIncreaseOverlap_MPIBAIJ,
1922cc2dc46cSBarry Smith   MatGetValues_MPIBAIJ,
1923cc2dc46cSBarry Smith   0,
1924cc2dc46cSBarry Smith   MatPrintHelp_MPIBAIJ,
1925cc2dc46cSBarry Smith   MatScale_MPIBAIJ,
1926cc2dc46cSBarry Smith   0,
1927cc2dc46cSBarry Smith   0,
1928cc2dc46cSBarry Smith   0,
1929cc2dc46cSBarry Smith   MatGetBlockSize_MPIBAIJ,
1930cc2dc46cSBarry Smith   0,
1931cc2dc46cSBarry Smith   0,
1932cc2dc46cSBarry Smith   0,
1933cc2dc46cSBarry Smith   0,
1934cc2dc46cSBarry Smith   0,
1935cc2dc46cSBarry Smith   0,
1936cc2dc46cSBarry Smith   MatSetUnfactored_MPIBAIJ,
1937cc2dc46cSBarry Smith   0,
1938cc2dc46cSBarry Smith   MatSetValuesBlocked_MPIBAIJ,
1939cc2dc46cSBarry Smith   0,
1940f14a1c24SBarry Smith   MatDestroy_MPIBAIJ,
1941f14a1c24SBarry Smith   MatView_MPIBAIJ,
19427843d17aSBarry Smith   MatGetMaps_Petsc,
19437843d17aSBarry Smith   0,
19447843d17aSBarry Smith   0,
19457843d17aSBarry Smith   0,
19467843d17aSBarry Smith   0,
19477843d17aSBarry Smith   0,
19487843d17aSBarry Smith   0,
19497843d17aSBarry Smith   MatGetRowMax_MPIBAIJ};
195079bdfe76SSatish Balay 
19515ef9f2a5SBarry Smith 
1952e18c124aSSatish Balay EXTERN_C_BEGIN
19535ef9f2a5SBarry Smith #undef __FUNC__
1954b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIBAIJ"
19555ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
19565ef9f2a5SBarry Smith {
19575ef9f2a5SBarry Smith   PetscFunctionBegin;
19585ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
19595ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
19605ef9f2a5SBarry Smith   PetscFunctionReturn(0);
19615ef9f2a5SBarry Smith }
1962e18c124aSSatish Balay EXTERN_C_END
196379bdfe76SSatish Balay 
1964273d9f13SBarry Smith EXTERN_C_BEGIN
1965273d9f13SBarry Smith #undef __FUNC__
1966b0a32e0cSBarry Smith #define __FUNC__ "MatCreate_MPIBAIJ"
1967273d9f13SBarry Smith int MatCreate_MPIBAIJ(Mat B)
1968273d9f13SBarry Smith {
1969273d9f13SBarry Smith   Mat_MPIBAIJ  *b;
1970273d9f13SBarry Smith   int          ierr,size;
1971273d9f13SBarry Smith   PetscTruth   flg;
1972273d9f13SBarry Smith 
1973273d9f13SBarry Smith   PetscFunctionBegin;
1974273d9f13SBarry Smith 
1975273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
197682502324SSatish Balay   ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr);
197782502324SSatish Balay   B->data = (void*)b;
197882502324SSatish Balay 
1979273d9f13SBarry Smith   ierr    = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr);
1980273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1981273d9f13SBarry Smith   B->mapping    = 0;
1982273d9f13SBarry Smith   B->factor     = 0;
1983273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
1984273d9f13SBarry Smith 
1985273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
1986273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1987273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1988273d9f13SBarry Smith 
1989273d9f13SBarry Smith   /* build local table of row and column ownerships */
199082502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1991b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
1992273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1993273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1994273d9f13SBarry Smith 
1995273d9f13SBarry Smith   /* build cache for off array entries formed */
1996273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1997273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
1998273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
1999273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2000273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2001273d9f13SBarry Smith 
2002273d9f13SBarry Smith #if defined(PEYSC_USE_MAT_SINGLE)
2003273d9f13SBarry Smith   /* stuff for MatSetValues_XXX in single precision */
2004273d9f13SBarry Smith   b->lensetvalues     = 0;
2005273d9f13SBarry Smith   b->setvaluescopy    = PETSC_NULL;
2006273d9f13SBarry Smith #endif
2007273d9f13SBarry Smith 
2008273d9f13SBarry Smith   /* stuff used in block assembly */
2009273d9f13SBarry Smith   b->barray       = 0;
2010273d9f13SBarry Smith 
2011273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2012273d9f13SBarry Smith   b->lvec         = 0;
2013273d9f13SBarry Smith   b->Mvctx        = 0;
2014273d9f13SBarry Smith 
2015273d9f13SBarry Smith   /* stuff for MatGetRow() */
2016273d9f13SBarry Smith   b->rowindices   = 0;
2017273d9f13SBarry Smith   b->rowvalues    = 0;
2018273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2019273d9f13SBarry Smith 
2020273d9f13SBarry Smith   /* hash table stuff */
2021273d9f13SBarry Smith   b->ht           = 0;
2022273d9f13SBarry Smith   b->hd           = 0;
2023273d9f13SBarry Smith   b->ht_size      = 0;
2024273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2025273d9f13SBarry Smith   b->ht_fact      = 0;
2026273d9f13SBarry Smith   b->ht_total_ct  = 0;
2027273d9f13SBarry Smith   b->ht_insert_ct = 0;
2028273d9f13SBarry Smith 
2029b0a32e0cSBarry Smith   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
2030273d9f13SBarry Smith   if (flg) {
2031273d9f13SBarry Smith     double fact = 1.39;
2032273d9f13SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
2033b0a32e0cSBarry Smith     ierr = PetscOptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
2034273d9f13SBarry Smith     if (fact <= 1.0) fact = 1.39;
2035273d9f13SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2036b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact);
2037273d9f13SBarry Smith   }
2038273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2039273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2040273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2041273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2042273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2043273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2044273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2045273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2046273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2047273d9f13SBarry Smith   PetscFunctionReturn(0);
2048273d9f13SBarry Smith }
2049273d9f13SBarry Smith EXTERN_C_END
2050273d9f13SBarry Smith 
2051273d9f13SBarry Smith #undef __FUNC__
2052b0a32e0cSBarry Smith #define __FUNC__ "MatMPIBAIJSetPreallocation"
2053273d9f13SBarry Smith /*@C
2054273d9f13SBarry Smith    MatMPIBAIJSetPreallocation - Creates a sparse parallel matrix in block AIJ format
2055273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2056273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2057273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2058273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2059273d9f13SBarry Smith 
2060273d9f13SBarry Smith    Collective on Mat
2061273d9f13SBarry Smith 
2062273d9f13SBarry Smith    Input Parameters:
2063273d9f13SBarry Smith +  A - the matrix
2064273d9f13SBarry Smith .  bs   - size of blockk
2065273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2066273d9f13SBarry Smith            submatrix  (same for all local rows)
2067273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2068273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2069273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2070273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2071273d9f13SBarry Smith            submatrix (same for all local rows).
2072273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2073273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2074273d9f13SBarry Smith            each block row) or PETSC_NULL.
2075273d9f13SBarry Smith 
2076273d9f13SBarry Smith    Output Parameter:
2077273d9f13SBarry Smith 
2078273d9f13SBarry Smith 
2079273d9f13SBarry Smith    Options Database Keys:
2080273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
2081273d9f13SBarry Smith                      block calculations (much slower)
2082273d9f13SBarry Smith .   -mat_block_size - size of the blocks to use
2083273d9f13SBarry Smith 
2084273d9f13SBarry Smith    Notes:
2085273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2086273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2087273d9f13SBarry Smith 
2088273d9f13SBarry Smith    Storage Information:
2089273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2090273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2091273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2092273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2093273d9f13SBarry Smith 
2094273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2095273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2096273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2097273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2098273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2099273d9f13SBarry Smith 
2100273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2101273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2102273d9f13SBarry Smith 
2103273d9f13SBarry Smith .vb
2104273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2105273d9f13SBarry Smith           -------------------
2106273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2107273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2108273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2109273d9f13SBarry Smith           -------------------
2110273d9f13SBarry Smith .ve
2111273d9f13SBarry Smith 
2112273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2113273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2114273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2115273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2116273d9f13SBarry Smith 
2117273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2118273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2119273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2120273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2121273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2122273d9f13SBarry Smith    matrices.
2123273d9f13SBarry Smith 
2124273d9f13SBarry Smith    Level: intermediate
2125273d9f13SBarry Smith 
2126273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2127273d9f13SBarry Smith 
2128273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2129273d9f13SBarry Smith @*/
2130273d9f13SBarry Smith int MatMPIBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
2131273d9f13SBarry Smith {
2132273d9f13SBarry Smith   Mat_MPIBAIJ  *b;
2133273d9f13SBarry Smith   int          ierr,i;
2134273d9f13SBarry Smith   PetscTruth   flg2;
2135273d9f13SBarry Smith 
2136273d9f13SBarry Smith   PetscFunctionBegin;
2137273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg2);CHKERRQ(ierr);
2138273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
213947a75d0bSBarry Smith 
2140273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
2141b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2142273d9f13SBarry Smith 
2143273d9f13SBarry Smith   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2144273d9f13SBarry Smith   if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than -1: value %d",d_nz);
2145273d9f13SBarry Smith   if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than -1: value %d",o_nz);
2146273d9f13SBarry Smith   if (d_nnz) {
2147273d9f13SBarry Smith   for (i=0; i<B->m/bs; i++) {
2148273d9f13SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
2149273d9f13SBarry Smith     }
2150273d9f13SBarry Smith   }
2151273d9f13SBarry Smith   if (o_nnz) {
2152273d9f13SBarry Smith     for (i=0; i<B->m/bs; i++) {
2153273d9f13SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
2154273d9f13SBarry Smith     }
2155273d9f13SBarry Smith   }
2156273d9f13SBarry Smith 
215747a75d0bSBarry Smith   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
215847a75d0bSBarry Smith   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
215947a75d0bSBarry Smith   ierr = MapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
216047a75d0bSBarry Smith   ierr = MapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
216147a75d0bSBarry Smith 
2162273d9f13SBarry Smith   b = (Mat_MPIBAIJ*)B->data;
2163273d9f13SBarry Smith   b->bs  = bs;
2164273d9f13SBarry Smith   b->bs2 = bs*bs;
2165273d9f13SBarry Smith   b->mbs = B->m/bs;
2166273d9f13SBarry Smith   b->nbs = B->n/bs;
2167273d9f13SBarry Smith   b->Mbs = B->M/bs;
2168273d9f13SBarry Smith   b->Nbs = B->N/bs;
2169273d9f13SBarry Smith 
2170273d9f13SBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
2171273d9f13SBarry Smith   b->rowners[0]    = 0;
2172273d9f13SBarry Smith   for (i=2; i<=b->size; i++) {
2173273d9f13SBarry Smith     b->rowners[i] += b->rowners[i-1];
2174273d9f13SBarry Smith   }
2175273d9f13SBarry Smith   b->rstart    = b->rowners[b->rank];
2176273d9f13SBarry Smith   b->rend      = b->rowners[b->rank+1];
2177273d9f13SBarry Smith 
2178273d9f13SBarry Smith   ierr = MPI_Allgather(&b->nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
2179273d9f13SBarry Smith   b->cowners[0] = 0;
2180273d9f13SBarry Smith   for (i=2; i<=b->size; i++) {
2181273d9f13SBarry Smith     b->cowners[i] += b->cowners[i-1];
2182273d9f13SBarry Smith   }
2183273d9f13SBarry Smith   b->cstart    = b->cowners[b->rank];
2184273d9f13SBarry Smith   b->cend      = b->cowners[b->rank+1];
2185273d9f13SBarry Smith 
2186273d9f13SBarry Smith   for (i=0; i<=b->size; i++) {
2187273d9f13SBarry Smith     b->rowners_bs[i] = b->rowners[i]*bs;
2188273d9f13SBarry Smith   }
2189273d9f13SBarry Smith   b->rstart_bs = b->rstart*bs;
2190273d9f13SBarry Smith   b->rend_bs   = b->rend*bs;
2191273d9f13SBarry Smith   b->cstart_bs = b->cstart*bs;
2192273d9f13SBarry Smith   b->cend_bs   = b->cend*bs;
2193273d9f13SBarry Smith 
2194273d9f13SBarry Smith   if (d_nz == PETSC_DEFAULT) d_nz = 5;
2195273d9f13SBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
2196b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
2197273d9f13SBarry Smith   if (o_nz == PETSC_DEFAULT) o_nz = 0;
2198273d9f13SBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
2199b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
2200273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
2201273d9f13SBarry Smith 
2202273d9f13SBarry Smith   PetscFunctionReturn(0);
2203273d9f13SBarry Smith }
2204273d9f13SBarry Smith 
22055615d1e5SSatish Balay #undef __FUNC__
2206b0a32e0cSBarry Smith #define __FUNC__ "MatCreateMPIBAIJ"
220779bdfe76SSatish Balay /*@C
220879bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
220979bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
221079bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
221179bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
221279bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
221379bdfe76SSatish Balay 
2214db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2215db81eaa0SLois Curfman McInnes 
221679bdfe76SSatish Balay    Input Parameters:
2217db81eaa0SLois Curfman McInnes +  comm - MPI communicator
221879bdfe76SSatish Balay .  bs   - size of blockk
221979bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
222092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
222192e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
222292e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
222392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
222492e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2225be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2226be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
222747a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
222879bdfe76SSatish Balay            submatrix  (same for all local rows)
222947a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
223092e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2231db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
223247a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
223379bdfe76SSatish Balay            submatrix (same for all local rows).
223447a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
223592e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
223692e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
223779bdfe76SSatish Balay 
223879bdfe76SSatish Balay    Output Parameter:
223979bdfe76SSatish Balay .  A - the matrix
224079bdfe76SSatish Balay 
2241db81eaa0SLois Curfman McInnes    Options Database Keys:
2242db81eaa0SLois Curfman McInnes .   -mat_no_unroll - uses code that does not unroll the loops in the
2243db81eaa0SLois Curfman McInnes                      block calculations (much slower)
2244db81eaa0SLois Curfman McInnes .   -mat_block_size - size of the blocks to use
22453ffaccefSLois Curfman McInnes 
2246b259b22eSLois Curfman McInnes    Notes:
224747a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
224847a75d0bSBarry Smith 
224979bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
225079bdfe76SSatish Balay    (possibly both).
225179bdfe76SSatish Balay 
2252be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2253be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2254be79a94dSBarry Smith 
225579bdfe76SSatish Balay    Storage Information:
225679bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
225779bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
225879bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
225979bdfe76SSatish Balay    local matrix (a rectangular submatrix).
226079bdfe76SSatish Balay 
226179bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
226279bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
226379bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
226479bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
226579bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
226679bdfe76SSatish Balay 
226779bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
226879bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
226979bdfe76SSatish Balay 
2270db81eaa0SLois Curfman McInnes .vb
2271db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2272db81eaa0SLois Curfman McInnes           -------------------
2273db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2274db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2275db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2276db81eaa0SLois Curfman McInnes           -------------------
2277db81eaa0SLois Curfman McInnes .ve
227879bdfe76SSatish Balay 
227979bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
228079bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
228179bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
228257b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
228379bdfe76SSatish Balay 
2284d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2285d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
228679bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
228792e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
228892e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
22896da5968aSLois Curfman McInnes    matrices.
229079bdfe76SSatish Balay 
2291027ccd11SLois Curfman McInnes    Level: intermediate
2292027ccd11SLois Curfman McInnes 
229392e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
229479bdfe76SSatish Balay 
22953eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
229679bdfe76SSatish Balay @*/
2297329f5518SBarry Smith int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
229879bdfe76SSatish Balay {
2299273d9f13SBarry Smith   int ierr,size;
230079bdfe76SSatish Balay 
2301d64ed03dSBarry Smith   PetscFunctionBegin;
2302273d9f13SBarry Smith   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2303d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2304273d9f13SBarry Smith   if (size > 1) {
2305273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2306273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2307273d9f13SBarry Smith   } else {
2308273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2309273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
23103914022bSBarry Smith   }
23113a40ed3dSBarry Smith   PetscFunctionReturn(0);
231279bdfe76SSatish Balay }
2313026e39d0SSatish Balay 
23145615d1e5SSatish Balay #undef __FUNC__
2315b0a32e0cSBarry Smith #define __FUNC__ "MatDuplicate_MPIBAIJ"
23162e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
23170ac07820SSatish Balay {
23180ac07820SSatish Balay   Mat         mat;
23190ac07820SSatish Balay   Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2320f1af5d2fSBarry Smith   int         ierr,len=0;
23210ac07820SSatish Balay 
2322d64ed03dSBarry Smith   PetscFunctionBegin;
23230ac07820SSatish Balay   *newmat       = 0;
2324273d9f13SBarry Smith   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2325273d9f13SBarry Smith   ierr = MatSetType(mat,MATMPIBAIJ);CHKERRQ(ierr);
2326273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
23270ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
2328273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
23290ac07820SSatish Balay   a->bs  = oldmat->bs;
23300ac07820SSatish Balay   a->bs2 = oldmat->bs2;
23310ac07820SSatish Balay   a->mbs = oldmat->mbs;
23320ac07820SSatish Balay   a->nbs = oldmat->nbs;
23330ac07820SSatish Balay   a->Mbs = oldmat->Mbs;
23340ac07820SSatish Balay   a->Nbs = oldmat->Nbs;
23350ac07820SSatish Balay 
23360ac07820SSatish Balay   a->rstart       = oldmat->rstart;
23370ac07820SSatish Balay   a->rend         = oldmat->rend;
23380ac07820SSatish Balay   a->cstart       = oldmat->cstart;
23390ac07820SSatish Balay   a->cend         = oldmat->cend;
23400ac07820SSatish Balay   a->size         = oldmat->size;
23410ac07820SSatish Balay   a->rank         = oldmat->rank;
2342aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2343aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2344aef5e8e0SSatish Balay   a->rowindices   = 0;
23450ac07820SSatish Balay   a->rowvalues    = 0;
23460ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
234730793edcSSatish Balay   a->barray       = 0;
23483123a43fSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
23493123a43fSSatish Balay   a->rend_bs      = oldmat->rend_bs;
23503123a43fSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
23513123a43fSSatish Balay   a->cend_bs      = oldmat->cend_bs;
23520ac07820SSatish Balay 
2353133cdb44SSatish Balay   /* hash table stuff */
2354133cdb44SSatish Balay   a->ht           = 0;
2355133cdb44SSatish Balay   a->hd           = 0;
2356133cdb44SSatish Balay   a->ht_size      = 0;
2357133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
235825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2359133cdb44SSatish Balay   a->ht_total_ct  = 0;
2360133cdb44SSatish Balay   a->ht_insert_ct = 0;
2361133cdb44SSatish Balay 
2362549d3d68SSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
23638798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
23648798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
23650ac07820SSatish Balay   if (oldmat->colmap) {
2366aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
23670f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
236848e59246SSatish Balay #else
236982502324SSatish Balay   ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2370b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2371549d3d68SSatish Balay   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
237248e59246SSatish Balay #endif
23730ac07820SSatish Balay   } else a->colmap = 0;
23740ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
237582502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2376b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2377549d3d68SSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
23780ac07820SSatish Balay   } else a->garray = 0;
23790ac07820SSatish Balay 
23800ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2381b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
23820ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2383e18c124aSSatish Balay 
2384b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
23852e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2386b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
23872e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2388b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2389b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
23900ac07820SSatish Balay   *newmat = mat;
23913a40ed3dSBarry Smith   PetscFunctionReturn(0);
23920ac07820SSatish Balay }
239357b952d6SSatish Balay 
2394e090d566SSatish Balay #include "petscsys.h"
239557b952d6SSatish Balay 
2396273d9f13SBarry Smith EXTERN_C_BEGIN
23975615d1e5SSatish Balay #undef __FUNC__
2398b0a32e0cSBarry Smith #define __FUNC__ "MatLoad_MPIBAIJ"
2399b0a32e0cSBarry Smith int MatLoad_MPIBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
240057b952d6SSatish Balay {
240157b952d6SSatish Balay   Mat          A;
240257b952d6SSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
240357b952d6SSatish Balay   Scalar       *vals,*buf;
240457b952d6SSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
240557b952d6SSatish Balay   MPI_Status   status;
2406cee3aa6bSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
240757b952d6SSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2408f1af5d2fSBarry Smith   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
240957b952d6SSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
241057b952d6SSatish Balay   int          dcount,kmax,k,nzcount,tmp;
241157b952d6SSatish Balay 
2412d64ed03dSBarry Smith   PetscFunctionBegin;
2413b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
241457b952d6SSatish Balay 
2415d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2416d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
241757b952d6SSatish Balay   if (!rank) {
2418b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2419e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
242029bbc08cSBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2421d64ed03dSBarry Smith     if (header[3] < 0) {
242229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPIBAIJ");
2423d64ed03dSBarry Smith     }
24246c5fab8fSBarry Smith   }
2425d64ed03dSBarry Smith 
2426ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
242757b952d6SSatish Balay   M = header[1]; N = header[2];
242857b952d6SSatish Balay 
242929bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
243057b952d6SSatish Balay 
243157b952d6SSatish Balay   /*
243257b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
243357b952d6SSatish Balay      divisible by the blocksize
243457b952d6SSatish Balay   */
243557b952d6SSatish Balay   Mbs        = M/bs;
243657b952d6SSatish Balay   extra_rows = bs - M + bs*(Mbs);
243757b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
243857b952d6SSatish Balay   else                  Mbs++;
243957b952d6SSatish Balay   if (extra_rows &&!rank) {
2440b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n");
244157b952d6SSatish Balay   }
2442537820f0SBarry Smith 
244357b952d6SSatish Balay   /* determine ownership of all rows */
244457b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
244557b952d6SSatish Balay   m          = mbs*bs;
2446b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2447cee3aa6bSSatish Balay   browners   = rowners + size + 1;
2448ca161407SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
244957b952d6SSatish Balay   rowners[0] = 0;
2450cee3aa6bSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2451cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
245257b952d6SSatish Balay   rstart = rowners[rank];
245357b952d6SSatish Balay   rend   = rowners[rank+1];
245457b952d6SSatish Balay 
245557b952d6SSatish Balay   /* distribute row lengths to all processors */
245682502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
245757b952d6SSatish Balay   if (!rank) {
2458b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2459e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
246057b952d6SSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
246182502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2462cee3aa6bSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2463ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2464606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2465d64ed03dSBarry Smith   } else {
2466ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
246757b952d6SSatish Balay   }
246857b952d6SSatish Balay 
246957b952d6SSatish Balay   if (!rank) {
247057b952d6SSatish Balay     /* calculate the number of nonzeros on each processor */
247182502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2472549d3d68SSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
247357b952d6SSatish Balay     for (i=0; i<size; i++) {
247457b952d6SSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
247557b952d6SSatish Balay         procsnz[i] += rowlengths[j];
247657b952d6SSatish Balay       }
247757b952d6SSatish Balay     }
2478606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
247957b952d6SSatish Balay 
248057b952d6SSatish Balay     /* determine max buffer needed and allocate it */
248157b952d6SSatish Balay     maxnz = 0;
248257b952d6SSatish Balay     for (i=0; i<size; i++) {
248357b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
248457b952d6SSatish Balay     }
248582502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
248657b952d6SSatish Balay 
248757b952d6SSatish Balay     /* read in my part of the matrix column indices  */
248857b952d6SSatish Balay     nz     = procsnz[0];
248982502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
249057b952d6SSatish Balay     mycols = ibuf;
2491cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2492e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2493cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2494cee3aa6bSSatish Balay 
249557b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
249657b952d6SSatish Balay     for (i=1; i<size-1; i++) {
249757b952d6SSatish Balay       nz   = procsnz[i];
2498e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2499ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
250057b952d6SSatish Balay     }
250157b952d6SSatish Balay     /* read in the stuff for the last proc */
250257b952d6SSatish Balay     if (size != 1) {
250357b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2504e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
250557b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2506ca161407SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
250757b952d6SSatish Balay     }
2508606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2509d64ed03dSBarry Smith   } else {
251057b952d6SSatish Balay     /* determine buffer space needed for message */
251157b952d6SSatish Balay     nz = 0;
251257b952d6SSatish Balay     for (i=0; i<m; i++) {
251357b952d6SSatish Balay       nz += locrowlens[i];
251457b952d6SSatish Balay     }
251582502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
251657b952d6SSatish Balay     mycols = ibuf;
251757b952d6SSatish Balay     /* receive message of column indices*/
2518ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2519ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
252029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
252157b952d6SSatish Balay   }
252257b952d6SSatish Balay 
252357b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
252482502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2525cee3aa6bSSatish Balay   odlens   = dlens + (rend-rstart);
252682502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2527549d3d68SSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
252857b952d6SSatish Balay   masked1  = mask    + Mbs;
252957b952d6SSatish Balay   masked2  = masked1 + Mbs;
253057b952d6SSatish Balay   rowcount = 0; nzcount = 0;
253157b952d6SSatish Balay   for (i=0; i<mbs; i++) {
253257b952d6SSatish Balay     dcount  = 0;
253357b952d6SSatish Balay     odcount = 0;
253457b952d6SSatish Balay     for (j=0; j<bs; j++) {
253557b952d6SSatish Balay       kmax = locrowlens[rowcount];
253657b952d6SSatish Balay       for (k=0; k<kmax; k++) {
253757b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
253857b952d6SSatish Balay         if (!mask[tmp]) {
253957b952d6SSatish Balay           mask[tmp] = 1;
254057b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
254157b952d6SSatish Balay           else masked1[dcount++] = tmp;
254257b952d6SSatish Balay         }
254357b952d6SSatish Balay       }
254457b952d6SSatish Balay       rowcount++;
254557b952d6SSatish Balay     }
2546cee3aa6bSSatish Balay 
254757b952d6SSatish Balay     dlens[i]  = dcount;
254857b952d6SSatish Balay     odlens[i] = odcount;
2549cee3aa6bSSatish Balay 
255057b952d6SSatish Balay     /* zero out the mask elements we set */
255157b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
255257b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
255357b952d6SSatish Balay   }
2554cee3aa6bSSatish Balay 
255557b952d6SSatish Balay   /* create our matrix */
255647a75d0bSBarry Smith   ierr = MatCreateMPIBAIJ(comm,bs,m,m,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr);
255757b952d6SSatish Balay   A = *newmat;
25586d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
255957b952d6SSatish Balay 
256057b952d6SSatish Balay   if (!rank) {
256182502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(Scalar),&buf);CHKERRQ(ierr);
256257b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
256357b952d6SSatish Balay     nz = procsnz[0];
256457b952d6SSatish Balay     vals = buf;
2565cee3aa6bSSatish Balay     mycols = ibuf;
2566cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2567e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2568cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2569537820f0SBarry Smith 
257057b952d6SSatish Balay     /* insert into matrix */
257157b952d6SSatish Balay     jj      = rstart*bs;
257257b952d6SSatish Balay     for (i=0; i<m; i++) {
2573b48991e4SBarry Smith       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
257457b952d6SSatish Balay       mycols += locrowlens[i];
257557b952d6SSatish Balay       vals   += locrowlens[i];
257657b952d6SSatish Balay       jj++;
257757b952d6SSatish Balay     }
257857b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
257957b952d6SSatish Balay     for (i=1; i<size-1; i++) {
258057b952d6SSatish Balay       nz   = procsnz[i];
258157b952d6SSatish Balay       vals = buf;
2582e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2583ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
258457b952d6SSatish Balay     }
258557b952d6SSatish Balay     /* the last proc */
258657b952d6SSatish Balay     if (size != 1){
258757b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2588cee3aa6bSSatish Balay       vals = buf;
2589e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
259057b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2591ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
259257b952d6SSatish Balay     }
2593606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2594d64ed03dSBarry Smith   } else {
259557b952d6SSatish Balay     /* receive numeric values */
259682502324SSatish Balay     ierr = PetscMalloc(nz*sizeof(Scalar),&buf);CHKERRQ(ierr);
259757b952d6SSatish Balay 
259857b952d6SSatish Balay     /* receive message of values*/
259957b952d6SSatish Balay     vals   = buf;
2600cee3aa6bSSatish Balay     mycols = ibuf;
2601ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2602ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
260329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
260457b952d6SSatish Balay 
260557b952d6SSatish Balay     /* insert into matrix */
260657b952d6SSatish Balay     jj      = rstart*bs;
2607cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2608b48991e4SBarry Smith       ierr    = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
260957b952d6SSatish Balay       mycols += locrowlens[i];
261057b952d6SSatish Balay       vals   += locrowlens[i];
261157b952d6SSatish Balay       jj++;
261257b952d6SSatish Balay     }
261357b952d6SSatish Balay   }
2614606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2615606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2616606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2617606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2618606d414cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2619606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
26206d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26216d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26223a40ed3dSBarry Smith   PetscFunctionReturn(0);
262357b952d6SSatish Balay }
2624273d9f13SBarry Smith EXTERN_C_END
262557b952d6SSatish Balay 
2626133cdb44SSatish Balay #undef __FUNC__
2627b0a32e0cSBarry Smith #define __FUNC__ "MatMPIBAIJSetHashTableFactor"
2628133cdb44SSatish Balay /*@
2629133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2630133cdb44SSatish Balay 
2631133cdb44SSatish Balay    Input Parameters:
2632133cdb44SSatish Balay .  mat  - the matrix
2633133cdb44SSatish Balay .  fact - factor
2634133cdb44SSatish Balay 
2635fee21e36SBarry Smith    Collective on Mat
2636fee21e36SBarry Smith 
26378c890885SBarry Smith    Level: advanced
26388c890885SBarry Smith 
2639133cdb44SSatish Balay   Notes:
2640133cdb44SSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2641133cdb44SSatish Balay 
2642133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2643133cdb44SSatish Balay 
2644133cdb44SSatish Balay .seealso: MatSetOption()
2645133cdb44SSatish Balay @*/
2646329f5518SBarry Smith int MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2647133cdb44SSatish Balay {
264825fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2649273d9f13SBarry Smith   int         ierr;
2650273d9f13SBarry Smith   PetscTruth  flg;
2651133cdb44SSatish Balay 
2652133cdb44SSatish Balay   PetscFunctionBegin;
2653133cdb44SSatish Balay   PetscValidHeaderSpecific(mat,MAT_COOKIE);
2654273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)mat,MATMPIBAIJ,&flg);CHKERRQ(ierr);
2655273d9f13SBarry Smith   if (!flg) {
265629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Incorrect matrix type. Use MPIBAIJ only.");
2657133cdb44SSatish Balay   }
2658133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2659133cdb44SSatish Balay   baij->ht_fact = fact;
2660133cdb44SSatish Balay   PetscFunctionReturn(0);
2661133cdb44SSatish Balay }
2662*f2a5309cSSatish Balay 
2663*f2a5309cSSatish Balay #undef __FUNC__
2664*f2a5309cSSatish Balay #define __FUNC__ "MatMPIBAIJGetSeqBAIJ"
2665*f2a5309cSSatish Balay int MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao)
2666*f2a5309cSSatish Balay {
2667*f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2668*f2a5309cSSatish Balay   PetscFunctionBegin;
2669*f2a5309cSSatish Balay   *Ad = a->A;
2670*f2a5309cSSatish Balay   *Ao = a->B;
2671*f2a5309cSSatish Balay   PetscFunctionReturn(0);
2672*f2a5309cSSatish Balay }
2673