xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision f6d58c54d912f43595d1b328db7c6f14b52561bb)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
164a2ae208SSatish Balay #undef __FUNCT__
17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
197843d17aSBarry Smith {
207843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
21dfbe8321SBarry Smith   PetscErrorCode ierr;
22985db425SBarry Smith   PetscInt       i,*idxb = 0;
2387828ca2SBarry Smith   PetscScalar    *va,*vb;
247843d17aSBarry Smith   Vec            vtmp;
257843d17aSBarry Smith 
267843d17aSBarry Smith   PetscFunctionBegin;
27985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
281ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
29985db425SBarry Smith   if (idx) {
30192daf7cSBarry Smith     for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;}
31985db425SBarry Smith   }
327843d17aSBarry Smith 
33d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
34d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
35985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
361ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
377843d17aSBarry Smith 
38d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++){
39d0f46423SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);}
407843d17aSBarry Smith   }
417843d17aSBarry Smith 
421ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
431ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
44985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
45ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
467843d17aSBarry Smith   PetscFunctionReturn(0);
477843d17aSBarry Smith }
487843d17aSBarry Smith 
497fc3c18eSBarry Smith EXTERN_C_BEGIN
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
537fc3c18eSBarry Smith {
547fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
55dfbe8321SBarry Smith   PetscErrorCode ierr;
567fc3c18eSBarry Smith 
577fc3c18eSBarry Smith   PetscFunctionBegin;
587fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
607fc3c18eSBarry Smith   PetscFunctionReturn(0);
617fc3c18eSBarry Smith }
627fc3c18eSBarry Smith EXTERN_C_END
637fc3c18eSBarry Smith 
647fc3c18eSBarry Smith EXTERN_C_BEGIN
654a2ae208SSatish Balay #undef __FUNCT__
664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
687fc3c18eSBarry Smith {
697fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
70dfbe8321SBarry Smith   PetscErrorCode ierr;
717fc3c18eSBarry Smith 
727fc3c18eSBarry Smith   PetscFunctionBegin;
737fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
757fc3c18eSBarry Smith   PetscFunctionReturn(0);
767fc3c18eSBarry Smith }
777fc3c18eSBarry Smith EXTERN_C_END
787fc3c18eSBarry Smith 
79537820f0SBarry Smith /*
80537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
8257b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
8357b952d6SSatish Balay    length of colmap equals the global matrix length.
8457b952d6SSatish Balay */
854a2ae208SSatish Balay #undef __FUNCT__
864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8857b952d6SSatish Balay {
8957b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9057b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
916849ba73SBarry Smith   PetscErrorCode ierr;
92d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9357b952d6SSatish Balay 
94d64ed03dSBarry Smith   PetscFunctionBegin;
95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
96f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9748e59246SSatish Balay   for (i=0; i<nbs; i++){
980f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
9948e59246SSatish Balay   }
10048e59246SSatish Balay #else
101b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10252e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
103b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10548e59246SSatish Balay #endif
1063a40ed3dSBarry Smith   PetscFunctionReturn(0);
10757b952d6SSatish Balay }
10857b952d6SSatish Balay 
10980c1aa95SSatish Balay #define CHUNKSIZE  10
11080c1aa95SSatish Balay 
111f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11280c1aa95SSatish Balay { \
11380c1aa95SSatish Balay  \
11480c1aa95SSatish Balay     brow = row/bs;  \
11580c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
116ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11780c1aa95SSatish Balay       bcol = col/bs; \
11880c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
119ab26458aSBarry Smith       low = 0; high = nrow; \
120ab26458aSBarry Smith       while (high-low > 3) { \
121ab26458aSBarry Smith         t = (low+high)/2; \
122ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
123ab26458aSBarry Smith         else              low  = t; \
124ab26458aSBarry Smith       } \
125ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12680c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12780c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12880c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
129eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
130eada6651SSatish Balay           else                    *bap  = value;  \
131ac7a638eSSatish Balay           goto a_noinsert; \
13280c1aa95SSatish Balay         } \
13380c1aa95SSatish Balay       } \
13489280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
135085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
136421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13780c1aa95SSatish Balay       N = nrow++ - 1;  \
13880c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
13980c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
14080c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1413eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14280c1aa95SSatish Balay       } \
1433eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14480c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14580c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
146ac7a638eSSatish Balay       a_noinsert:; \
14780c1aa95SSatish Balay     ailen[brow] = nrow; \
14880c1aa95SSatish Balay }
14957b952d6SSatish Balay 
150ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
151ac7a638eSSatish Balay { \
152ac7a638eSSatish Balay     brow = row/bs;  \
153ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
154ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
155ac7a638eSSatish Balay       bcol = col/bs; \
156ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
157ac7a638eSSatish Balay       low = 0; high = nrow; \
158ac7a638eSSatish Balay       while (high-low > 3) { \
159ac7a638eSSatish Balay         t = (low+high)/2; \
160ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
161ac7a638eSSatish Balay         else              low  = t; \
162ac7a638eSSatish Balay       } \
163ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
164ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
165ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
166ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
167ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
168ac7a638eSSatish Balay           else                    *bap  = value;  \
169ac7a638eSSatish Balay           goto b_noinsert; \
170ac7a638eSSatish Balay         } \
171ac7a638eSSatish Balay       } \
17289280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
173085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
174421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
175085a36d4SBarry Smith       CHKMEMQ;\
176ac7a638eSSatish Balay       N = nrow++ - 1;  \
177ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
178ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
179ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1803eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
181ac7a638eSSatish Balay       } \
1823eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
183ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
184ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
185ac7a638eSSatish Balay       b_noinsert:; \
186ac7a638eSSatish Balay     bilen[brow] = nrow; \
187ac7a638eSSatish Balay }
188ac7a638eSSatish Balay 
1894a2ae208SSatish Balay #undef __FUNCT__
1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19257b952d6SSatish Balay {
19357b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19493fea6afSBarry Smith   MatScalar      value;
195273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
196dfbe8321SBarry Smith   PetscErrorCode ierr;
197b24ad042SBarry Smith   PetscInt       i,j,row,col;
198d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
199d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
200d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
20157b952d6SSatish Balay 
202eada6651SSatish Balay   /* Some Variables required in the macro */
20380c1aa95SSatish Balay   Mat            A = baij->A;
20480c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
205b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2063eda8832SBarry Smith   MatScalar      *aa=a->a;
207ac7a638eSSatish Balay 
208ac7a638eSSatish Balay   Mat            B = baij->B;
209ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
210b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2113eda8832SBarry Smith   MatScalar      *ba=b->a;
212ac7a638eSSatish Balay 
213b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
214b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2153eda8832SBarry Smith   MatScalar      *ap,*bap;
21680c1aa95SSatish Balay 
217d64ed03dSBarry Smith   PetscFunctionBegin;
21857b952d6SSatish Balay   for (i=0; i<m; i++) {
2195ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
221d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
222639f9d9dSBarry Smith #endif
22357b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22457b952d6SSatish Balay       row = im[i] - rstart_orig;
22557b952d6SSatish Balay       for (j=0; j<n; j++) {
22657b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22757b952d6SSatish Balay           col = in[j] - cstart_orig;
22857b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23080c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23173959e64SBarry Smith         } else if (in[j] < 0) continue;
2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
233d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);}
234639f9d9dSBarry Smith #endif
23557b952d6SSatish Balay         else {
23657b952d6SSatish Balay           if (mat->was_assembled) {
237905e6a2fSBarry Smith             if (!baij->colmap) {
238905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
239905e6a2fSBarry Smith             }
240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2410f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
242bba1ac68SSatish Balay             col  = col - 1;
24348e59246SSatish Balay #else
244bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24548e59246SSatish Balay #endif
24657b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24757b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2488295de27SSatish Balay               col =  in[j];
2499bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2509bf004c3SSatish Balay               B = baij->B;
2519bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2529bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2539bf004c3SSatish Balay               ba=b->a;
254bba1ac68SSatish Balay             } else col += in[j]%bs;
2558295de27SSatish Balay           } else col = in[j];
25657b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25790da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25890da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25957b952d6SSatish Balay         }
26057b952d6SSatish Balay       }
261d64ed03dSBarry Smith     } else {
26290f02eecSBarry Smith       if (!baij->donotstash) {
263ff2fd236SBarry Smith         if (roworiented) {
264b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
265ff2fd236SBarry Smith         } else {
266b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26757b952d6SSatish Balay         }
26857b952d6SSatish Balay       }
26957b952d6SSatish Balay     }
27090f02eecSBarry Smith   }
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
27257b952d6SSatish Balay }
27357b952d6SSatish Balay 
2744a2ae208SSatish Balay #undef __FUNCT__
27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
277ab26458aSBarry Smith {
278ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
279dd6ea824SBarry Smith   const PetscScalar *value;
280f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
281273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
282dfbe8321SBarry Smith   PetscErrorCode    ierr;
283899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
284899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
285d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
286ab26458aSBarry Smith 
287b16ae2b1SBarry Smith   PetscFunctionBegin;
28830793edcSSatish Balay   if(!barray) {
28982502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29082502324SSatish Balay     baij->barray = barray;
29130793edcSSatish Balay   }
29230793edcSSatish Balay 
293ab26458aSBarry Smith   if (roworiented) {
294ab26458aSBarry Smith     stepval = (n-1)*bs;
295ab26458aSBarry Smith   } else {
296ab26458aSBarry Smith     stepval = (m-1)*bs;
297ab26458aSBarry Smith   }
298ab26458aSBarry Smith   for (i=0; i<m; i++) {
2995ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
30177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
302ab26458aSBarry Smith #endif
303ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
304ab26458aSBarry Smith       row = im[i] - rstart;
305ab26458aSBarry Smith       for (j=0; j<n; j++) {
30615b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30715b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
308f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
30915b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
310f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31115b57d14SSatish Balay         } else { /* Here a copy is required */
312ab26458aSBarry Smith           if (roworiented) {
313ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
314ab26458aSBarry Smith           } else {
315ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
316abef11f7SSatish Balay           }
31747513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
31847513183SBarry Smith             for (jj=0; jj<bs; jj++) {
31930793edcSSatish Balay               *barray++  = *value++;
32047513183SBarry Smith             }
32147513183SBarry Smith           }
32230793edcSSatish Balay           barray -=bs2;
32315b57d14SSatish Balay         }
324abef11f7SSatish Balay 
325abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
326abef11f7SSatish Balay           col  = in[j] - cstart;
32797e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
328ab26458aSBarry Smith         }
3295ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
33177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
332ab26458aSBarry Smith #endif
333ab26458aSBarry Smith         else {
334ab26458aSBarry Smith           if (mat->was_assembled) {
335ab26458aSBarry Smith             if (!baij->colmap) {
336ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
337ab26458aSBarry Smith             }
338a5eb4965SSatish Balay 
3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
341b24ad042SBarry Smith             { PetscInt data;
3420f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
34329bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
344fa46199cSSatish Balay             }
34548e59246SSatish Balay #else
34629bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
347a5eb4965SSatish Balay #endif
34848e59246SSatish Balay #endif
349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3500f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
351fa46199cSSatish Balay             col  = (col - 1)/bs;
35248e59246SSatish Balay #else
353a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35448e59246SSatish Balay #endif
355ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
356ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
357ab26458aSBarry Smith               col =  in[j];
358ab26458aSBarry Smith             }
359ab26458aSBarry Smith           }
360ab26458aSBarry Smith           else col = in[j];
36197e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
362ab26458aSBarry Smith         }
363ab26458aSBarry Smith       }
364d64ed03dSBarry Smith     } else {
365ab26458aSBarry Smith       if (!baij->donotstash) {
366ff2fd236SBarry Smith         if (roworiented) {
3676fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
368ff2fd236SBarry Smith         } else {
3696fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
370ff2fd236SBarry Smith         }
371abef11f7SSatish Balay       }
372ab26458aSBarry Smith     }
373ab26458aSBarry Smith   }
3743a40ed3dSBarry Smith   PetscFunctionReturn(0);
375ab26458aSBarry Smith }
3766fa18ffdSBarry Smith 
3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887
378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3814a2ae208SSatish Balay #undef __FUNCT__
38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3840bdbc534SSatish Balay {
3850bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
386273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
387dfbe8321SBarry Smith   PetscErrorCode ierr;
388b24ad042SBarry Smith   PetscInt       i,j,row,col;
389d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
390d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,Nbs=baij->Nbs;
391d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
392329f5518SBarry Smith   PetscReal      tmp;
3933eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
395b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3964a15367fSSatish Balay #endif
3970bdbc534SSatish Balay 
3980bdbc534SSatish Balay   PetscFunctionBegin;
3990bdbc534SSatish Balay 
4000bdbc534SSatish Balay   for (i=0; i<m; i++) {
4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
40229bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
403d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4040bdbc534SSatish Balay #endif
4050bdbc534SSatish Balay       row = im[i];
406c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4070bdbc534SSatish Balay       for (j=0; j<n; j++) {
4080bdbc534SSatish Balay         col = in[j];
4096fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
410b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
411c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
412c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4130bdbc534SSatish Balay 
414c2760754SSatish Balay 
415c2760754SSatish Balay         idx = h1;
4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
417187ce0cbSSatish Balay         insert_ct++;
418187ce0cbSSatish Balay         total_ct++;
419187ce0cbSSatish Balay         if (HT[idx] != key) {
420187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
421187ce0cbSSatish Balay           if (idx == size) {
422187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
423187ce0cbSSatish Balay             if (idx == h1) {
42477431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
425187ce0cbSSatish Balay             }
426187ce0cbSSatish Balay           }
427187ce0cbSSatish Balay         }
428187ce0cbSSatish Balay #else
429c2760754SSatish Balay         if (HT[idx] != key) {
430c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
431c2760754SSatish Balay           if (idx == size) {
432c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
433c2760754SSatish Balay             if (idx == h1) {
43477431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
435c2760754SSatish Balay             }
436c2760754SSatish Balay           }
437c2760754SSatish Balay         }
438187ce0cbSSatish Balay #endif
439c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
440c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
441c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4420bdbc534SSatish Balay       }
4430bdbc534SSatish Balay     } else {
4440bdbc534SSatish Balay       if (!baij->donotstash) {
445ff2fd236SBarry Smith         if (roworiented) {
446b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
447ff2fd236SBarry Smith         } else {
448b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4490bdbc534SSatish Balay         }
4500bdbc534SSatish Balay       }
4510bdbc534SSatish Balay     }
4520bdbc534SSatish Balay   }
4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
454187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
455187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
456187ce0cbSSatish Balay #endif
4570bdbc534SSatish Balay   PetscFunctionReturn(0);
4580bdbc534SSatish Balay }
4590bdbc534SSatish Balay 
4604a2ae208SSatish Balay #undef __FUNCT__
46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4630bdbc534SSatish Balay {
4640bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
465273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
466dfbe8321SBarry Smith   PetscErrorCode    ierr;
467b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
468899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
469d0f46423SBarry Smith   PetscInt          rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
470b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
471329f5518SBarry Smith   PetscReal         tmp;
4723eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
473dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
475b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4764a15367fSSatish Balay #endif
4770bdbc534SSatish Balay 
478d0a41580SSatish Balay   PetscFunctionBegin;
479d0a41580SSatish Balay 
4800bdbc534SSatish Balay   if (roworiented) {
4810bdbc534SSatish Balay     stepval = (n-1)*bs;
4820bdbc534SSatish Balay   } else {
4830bdbc534SSatish Balay     stepval = (m-1)*bs;
4840bdbc534SSatish Balay   }
4850bdbc534SSatish Balay   for (i=0; i<m; i++) {
4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
48777431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
48877431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4890bdbc534SSatish Balay #endif
4900bdbc534SSatish Balay     row   = im[i];
491ab715e2cSSatish Balay     v_t   = v + i*nbs2;
492c2760754SSatish Balay     if (row >= rstart && row < rend) {
4930bdbc534SSatish Balay       for (j=0; j<n; j++) {
4940bdbc534SSatish Balay         col = in[j];
4950bdbc534SSatish Balay 
4960bdbc534SSatish Balay         /* Look up into the Hash Table */
497c2760754SSatish Balay         key = row*Nbs+col+1;
498c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4990bdbc534SSatish Balay 
500c2760754SSatish Balay         idx = h1;
5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
502187ce0cbSSatish Balay         total_ct++;
503187ce0cbSSatish Balay         insert_ct++;
504187ce0cbSSatish Balay        if (HT[idx] != key) {
505187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
506187ce0cbSSatish Balay           if (idx == size) {
507187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
508187ce0cbSSatish Balay             if (idx == h1) {
50977431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
510187ce0cbSSatish Balay             }
511187ce0cbSSatish Balay           }
512187ce0cbSSatish Balay         }
513187ce0cbSSatish Balay #else
514c2760754SSatish Balay         if (HT[idx] != key) {
515c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
516c2760754SSatish Balay           if (idx == size) {
517c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
518c2760754SSatish Balay             if (idx == h1) {
51977431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
520c2760754SSatish Balay             }
521c2760754SSatish Balay           }
522c2760754SSatish Balay         }
523187ce0cbSSatish Balay #endif
524c2760754SSatish Balay         baij_a = HD[idx];
5250bdbc534SSatish Balay         if (roworiented) {
526c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
527187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
528187ce0cbSSatish Balay           value = v_t;
529187ce0cbSSatish Balay           v_t  += bs;
530fef45726SSatish Balay           if (addv == ADD_VALUES) {
531c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
532c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
533fef45726SSatish Balay                 baij_a[jj]  += *value++;
534b4cc0f5aSSatish Balay               }
535b4cc0f5aSSatish Balay             }
536fef45726SSatish Balay           } else {
537c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
538c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
539fef45726SSatish Balay                 baij_a[jj]  = *value++;
540fef45726SSatish Balay               }
541fef45726SSatish Balay             }
542fef45726SSatish Balay           }
5430bdbc534SSatish Balay         } else {
5440bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
545fef45726SSatish Balay           if (addv == ADD_VALUES) {
546b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5470bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
548fef45726SSatish Balay                 baij_a[jj]  += *value++;
549fef45726SSatish Balay               }
550fef45726SSatish Balay             }
551fef45726SSatish Balay           } else {
552fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
553fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
554fef45726SSatish Balay                 baij_a[jj]  = *value++;
555fef45726SSatish Balay               }
556b4cc0f5aSSatish Balay             }
5570bdbc534SSatish Balay           }
5580bdbc534SSatish Balay         }
5590bdbc534SSatish Balay       }
5600bdbc534SSatish Balay     } else {
5610bdbc534SSatish Balay       if (!baij->donotstash) {
5620bdbc534SSatish Balay         if (roworiented) {
5638798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5640bdbc534SSatish Balay         } else {
5658798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5660bdbc534SSatish Balay         }
5670bdbc534SSatish Balay       }
5680bdbc534SSatish Balay     }
5690bdbc534SSatish Balay   }
5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
571187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
572187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
573187ce0cbSSatish Balay #endif
5740bdbc534SSatish Balay   PetscFunctionReturn(0);
5750bdbc534SSatish Balay }
576133cdb44SSatish Balay 
5774a2ae208SSatish Balay #undef __FUNCT__
5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
580d6de1c52SSatish Balay {
581d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5826849ba73SBarry Smith   PetscErrorCode ierr;
583d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
584d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
585d6de1c52SSatish Balay 
586133cdb44SSatish Balay   PetscFunctionBegin;
587d6de1c52SSatish Balay   for (i=0; i<m; i++) {
58897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
589d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
590d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
591d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
592d6de1c52SSatish Balay       for (j=0; j<n; j++) {
59397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
594d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
595d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
596d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59798dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
598d64ed03dSBarry Smith         } else {
599905e6a2fSBarry Smith           if (!baij->colmap) {
600905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
601905e6a2fSBarry Smith           }
602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6030f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
604fa46199cSSatish Balay           data --;
60548e59246SSatish Balay #else
60648e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60748e59246SSatish Balay #endif
60848e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
609d9d09a02SSatish Balay           else {
61048e59246SSatish Balay             col  = data + idxn[j]%bs;
61198dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
612d6de1c52SSatish Balay           }
613d6de1c52SSatish Balay         }
614d6de1c52SSatish Balay       }
615d64ed03dSBarry Smith     } else {
61629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
617d6de1c52SSatish Balay     }
618d6de1c52SSatish Balay   }
6193a40ed3dSBarry Smith  PetscFunctionReturn(0);
620d6de1c52SSatish Balay }
621d6de1c52SSatish Balay 
6224a2ae208SSatish Balay #undef __FUNCT__
6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
625d6de1c52SSatish Balay {
626d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
627d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
628dfbe8321SBarry Smith   PetscErrorCode ierr;
629d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
630329f5518SBarry Smith   PetscReal      sum = 0.0;
6313eda8832SBarry Smith   MatScalar      *v;
632d6de1c52SSatish Balay 
633d64ed03dSBarry Smith   PetscFunctionBegin;
634d6de1c52SSatish Balay   if (baij->size == 1) {
635064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
636d6de1c52SSatish Balay   } else {
637d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
638d6de1c52SSatish Balay       v = amat->a;
6398a62d963SHong Zhang       nz = amat->nz*bs2;
6408a62d963SHong Zhang       for (i=0; i<nz; i++) {
641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
642329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
643d6de1c52SSatish Balay #else
644d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
645d6de1c52SSatish Balay #endif
646d6de1c52SSatish Balay       }
647d6de1c52SSatish Balay       v = bmat->a;
6488a62d963SHong Zhang       nz = bmat->nz*bs2;
6498a62d963SHong Zhang       for (i=0; i<nz; i++) {
650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
651329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
652d6de1c52SSatish Balay #else
653d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
654d6de1c52SSatish Balay #endif
655d6de1c52SSatish Balay       }
6567adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
657064f8208SBarry Smith       *nrm = sqrt(*nrm);
6588a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6598a62d963SHong Zhang       PetscReal *tmp,*tmp2;
660899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
661d0f46423SBarry Smith       ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
662d0f46423SBarry Smith       tmp2 = tmp + mat->cmap->N;
663d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6648a62d963SHong Zhang       v = amat->a; jj = amat->j;
6658a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6668a62d963SHong Zhang         for (j=0; j<bs; j++){
6678a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6688a62d963SHong Zhang           for (row=0; row<bs; row++){
6698a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6708a62d963SHong Zhang           }
6718a62d963SHong Zhang         }
6728a62d963SHong Zhang         jj++;
6738a62d963SHong Zhang       }
6748a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6758a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6768a62d963SHong Zhang         for (j=0; j<bs; j++){
6778a62d963SHong Zhang           col = bs*garray[*jj] + j;
6788a62d963SHong Zhang           for (row=0; row<bs; row++){
6798a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6808a62d963SHong Zhang           }
6818a62d963SHong Zhang         }
6828a62d963SHong Zhang         jj++;
6838a62d963SHong Zhang       }
684d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6858a62d963SHong Zhang       *nrm = 0.0;
686d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6878a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6888a62d963SHong Zhang       }
6898a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
6908a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
691577dd1f9SKris Buschelman       PetscReal *sums;
692577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
6938a62d963SHong Zhang       sum = 0.0;
6948a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6958a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6968a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6978a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6988a62d963SHong Zhang         for (i=0; i<nz; i++) {
6998a62d963SHong Zhang           for (col=0; col<bs; col++){
7008a62d963SHong Zhang             for (row=0; row<bs; row++){
7018a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7028a62d963SHong Zhang             }
7038a62d963SHong Zhang           }
7048a62d963SHong Zhang         }
7058a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7068a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7078a62d963SHong Zhang         for (i=0; i<nz; i++) {
7088a62d963SHong Zhang           for (col=0; col<bs; col++){
7098a62d963SHong Zhang             for (row=0; row<bs; row++){
7108a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7118a62d963SHong Zhang             }
7128a62d963SHong Zhang           }
7138a62d963SHong Zhang         }
7148a62d963SHong Zhang         for (row=0; row<bs; row++){
7158a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7168a62d963SHong Zhang         }
7178a62d963SHong Zhang       }
7187adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
719577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
720d64ed03dSBarry Smith     } else {
72129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
722d6de1c52SSatish Balay     }
723d64ed03dSBarry Smith   }
7243a40ed3dSBarry Smith   PetscFunctionReturn(0);
725d6de1c52SSatish Balay }
72657b952d6SSatish Balay 
727fef45726SSatish Balay /*
728fef45726SSatish Balay   Creates the hash table, and sets the table
729fef45726SSatish Balay   This table is created only once.
730fef45726SSatish Balay   If new entried need to be added to the matrix
731fef45726SSatish Balay   then the hash table has to be destroyed and
732fef45726SSatish Balay   recreated.
733fef45726SSatish Balay */
7344a2ae208SSatish Balay #undef __FUNCT__
7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
737596b8d2eSBarry Smith {
738596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
739596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
740596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
741b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7426849ba73SBarry Smith   PetscErrorCode ierr;
743899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
744899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
745b24ad042SBarry Smith   PetscInt       *HT,key;
7463eda8832SBarry Smith   MatScalar      **HD;
747329f5518SBarry Smith   PetscReal      tmp;
7486cf91177SBarry Smith #if defined(PETSC_USE_INFO)
749b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7504a15367fSSatish Balay #endif
751fef45726SSatish Balay 
752d64ed03dSBarry Smith   PetscFunctionBegin;
753b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
7540bdbc534SSatish Balay   size = baij->ht_size;
755fef45726SSatish Balay 
7560bdbc534SSatish Balay   if (baij->ht) {
7570bdbc534SSatish Balay     PetscFunctionReturn(0);
758596b8d2eSBarry Smith   }
7590bdbc534SSatish Balay 
760fef45726SSatish Balay   /* Allocate Memory for Hash Table */
761b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
762b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
763b9e4cc15SSatish Balay   HD       = baij->hd;
764a07cd24cSSatish Balay   HT       = baij->ht;
765b9e4cc15SSatish Balay 
766b9e4cc15SSatish Balay 
767b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
7680bdbc534SSatish Balay 
769596b8d2eSBarry Smith 
770596b8d2eSBarry Smith   /* Loop Over A */
7710bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
772596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7730bdbc534SSatish Balay       row = i+rstart;
7740bdbc534SSatish Balay       col = aj[j]+cstart;
775596b8d2eSBarry Smith 
776187ce0cbSSatish Balay       key = row*Nbs + col + 1;
777c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7780bdbc534SSatish Balay       for (k=0; k<size; k++){
779958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
7800bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7810bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
782596b8d2eSBarry Smith           break;
7836cf91177SBarry Smith #if defined(PETSC_USE_INFO)
784187ce0cbSSatish Balay         } else {
785187ce0cbSSatish Balay           ct++;
786187ce0cbSSatish Balay #endif
787596b8d2eSBarry Smith         }
788187ce0cbSSatish Balay       }
7896cf91177SBarry Smith #if defined(PETSC_USE_INFO)
790187ce0cbSSatish Balay       if (k> max) max = k;
791187ce0cbSSatish Balay #endif
792596b8d2eSBarry Smith     }
793596b8d2eSBarry Smith   }
794596b8d2eSBarry Smith   /* Loop Over B */
7950bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
796596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7970bdbc534SSatish Balay       row = i+rstart;
7980bdbc534SSatish Balay       col = garray[bj[j]];
799187ce0cbSSatish Balay       key = row*Nbs + col + 1;
800c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8010bdbc534SSatish Balay       for (k=0; k<size; k++){
802958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8030bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8040bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
805596b8d2eSBarry Smith           break;
8066cf91177SBarry Smith #if defined(PETSC_USE_INFO)
807187ce0cbSSatish Balay         } else {
808187ce0cbSSatish Balay           ct++;
809187ce0cbSSatish Balay #endif
810596b8d2eSBarry Smith         }
811187ce0cbSSatish Balay       }
8126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
813187ce0cbSSatish Balay       if (k> max) max = k;
814187ce0cbSSatish Balay #endif
815596b8d2eSBarry Smith     }
816596b8d2eSBarry Smith   }
817596b8d2eSBarry Smith 
818596b8d2eSBarry Smith   /* Print Summary */
8196cf91177SBarry Smith #if defined(PETSC_USE_INFO)
820c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
821596b8d2eSBarry Smith     if (HT[i]) {j++;}
822c38d4ed2SBarry Smith   }
8231e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
824187ce0cbSSatish Balay #endif
8253a40ed3dSBarry Smith   PetscFunctionReturn(0);
826596b8d2eSBarry Smith }
82757b952d6SSatish Balay 
8284a2ae208SSatish Balay #undef __FUNCT__
8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
831bbb85fb3SSatish Balay {
832bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
833dfbe8321SBarry Smith   PetscErrorCode ierr;
834b24ad042SBarry Smith   PetscInt       nstash,reallocs;
835bbb85fb3SSatish Balay   InsertMode     addv;
836bbb85fb3SSatish Balay 
837bbb85fb3SSatish Balay   PetscFunctionBegin;
838bbb85fb3SSatish Balay   if (baij->donotstash) {
839bbb85fb3SSatish Balay     PetscFunctionReturn(0);
840bbb85fb3SSatish Balay   }
841bbb85fb3SSatish Balay 
842bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8437adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
844bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
84529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
846bbb85fb3SSatish Balay   }
847bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
848bbb85fb3SSatish Balay 
849d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8501e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8518798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8521e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
85346680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8541e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
855bbb85fb3SSatish Balay   PetscFunctionReturn(0);
856bbb85fb3SSatish Balay }
857bbb85fb3SSatish Balay 
8584a2ae208SSatish Balay #undef __FUNCT__
8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
861bbb85fb3SSatish Balay {
862bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
86391c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8646849ba73SBarry Smith   PetscErrorCode ierr;
865b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
866e44c0bd4SBarry Smith   PetscInt       *row,*col;
867e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8683eda8832SBarry Smith   MatScalar      *val;
869bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
870b24ad042SBarry Smith   PetscMPIInt    n;
871bbb85fb3SSatish Balay 
87291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
873bbb85fb3SSatish Balay   PetscFunctionBegin;
874bbb85fb3SSatish Balay   if (!baij->donotstash) {
875a2d1c673SSatish Balay     while (1) {
8768798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
877a2d1c673SSatish Balay       if (!flg) break;
878a2d1c673SSatish Balay 
879bbb85fb3SSatish Balay       for (i=0; i<n;) {
880bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
881bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
882bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
883bbb85fb3SSatish Balay         else       ncols = n-i;
884bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
88597e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
886bbb85fb3SSatish Balay         i = j;
887bbb85fb3SSatish Balay       }
888bbb85fb3SSatish Balay     }
8898798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
890a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
891a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
892a2d1c673SSatish Balay        restore the original flags */
893a2d1c673SSatish Balay     r1 = baij->roworiented;
894a2d1c673SSatish Balay     r2 = a->roworiented;
89591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8967c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8977c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89891c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
899a2d1c673SSatish Balay     while (1) {
9008798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
901a2d1c673SSatish Balay       if (!flg) break;
902a2d1c673SSatish Balay 
903a2d1c673SSatish Balay       for (i=0; i<n;) {
904a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
905a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
906a2d1c673SSatish Balay         if (j < n) ncols = j-i;
907a2d1c673SSatish Balay         else       ncols = n-i;
90897e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
909a2d1c673SSatish Balay         i = j;
910a2d1c673SSatish Balay       }
911a2d1c673SSatish Balay     }
9128798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
913a2d1c673SSatish Balay     baij->roworiented = r1;
914a2d1c673SSatish Balay     a->roworiented    = r2;
91591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
916bbb85fb3SSatish Balay   }
917bbb85fb3SSatish Balay 
918bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
919bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
920bbb85fb3SSatish Balay 
921bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
922bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
923bbb85fb3SSatish Balay   /*
924bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
925bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
926bbb85fb3SSatish Balay   */
927bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9287adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
929bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
930bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
931bbb85fb3SSatish Balay     }
932bbb85fb3SSatish Balay   }
933bbb85fb3SSatish Balay 
934bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
935bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
936bbb85fb3SSatish Balay   }
93791c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
938bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
939bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
940bbb85fb3SSatish Balay 
9416cf91177SBarry Smith #if defined(PETSC_USE_INFO)
942bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9431e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
944bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
945bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
946bbb85fb3SSatish Balay   }
947bbb85fb3SSatish Balay #endif
948bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
949bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
950bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
951bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
952bbb85fb3SSatish Balay   }
953bbb85fb3SSatish Balay 
954606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
955606d414cSSatish Balay   baij->rowvalues = 0;
956bbb85fb3SSatish Balay   PetscFunctionReturn(0);
957bbb85fb3SSatish Balay }
95857b952d6SSatish Balay 
9594a2ae208SSatish Balay #undef __FUNCT__
9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
96257b952d6SSatish Balay {
96357b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
964dfbe8321SBarry Smith   PetscErrorCode    ierr;
965b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
966d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
96732077d6dSBarry Smith   PetscTruth        iascii,isdraw;
968b0a32e0cSBarry Smith   PetscViewer       sviewer;
969f3ef73ceSBarry Smith   PetscViewerFormat format;
97057b952d6SSatish Balay 
971d64ed03dSBarry Smith   PetscFunctionBegin;
97232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
973fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
97432077d6dSBarry Smith   if (iascii) {
975b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
976456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9774e220ebcSLois Curfman McInnes       MatInfo info;
9787adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
979d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
98077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
981d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
982d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
983d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
98477431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
985d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
98677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
987b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
98807d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
98957b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9903a40ed3dSBarry Smith       PetscFunctionReturn(0);
991fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
99277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9933a40ed3dSBarry Smith       PetscFunctionReturn(0);
99404929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
99504929863SHong Zhang       PetscFunctionReturn(0);
99657b952d6SSatish Balay     }
99757b952d6SSatish Balay   }
99857b952d6SSatish Balay 
9990f5bd95cSBarry Smith   if (isdraw) {
1000b0a32e0cSBarry Smith     PetscDraw       draw;
100157b952d6SSatish Balay     PetscTruth isnull;
1002b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1003b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
100457b952d6SSatish Balay   }
100557b952d6SSatish Balay 
100657b952d6SSatish Balay   if (size == 1) {
10077adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
100857b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1009d64ed03dSBarry Smith   } else {
101057b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
101157b952d6SSatish Balay     Mat         A;
101257b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1013d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10143eda8832SBarry Smith     MatScalar   *a;
101557b952d6SSatish Balay 
1016f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1017f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10187adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
101957b952d6SSatish Balay     if (!rank) {
1020f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1021d64ed03dSBarry Smith     } else {
1022f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
102357b952d6SSatish Balay     }
1024f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1025d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
102652e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
102757b952d6SSatish Balay 
102857b952d6SSatish Balay     /* copy over the A part */
102957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
103057b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1031b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
103257b952d6SSatish Balay 
103357b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1034899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
103557b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
103657b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1037899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
103857b952d6SSatish Balay         for (k=0; k<bs; k++) {
103997e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1040cee3aa6bSSatish Balay           col++; a += bs;
104157b952d6SSatish Balay         }
104257b952d6SSatish Balay       }
104357b952d6SSatish Balay     }
104457b952d6SSatish Balay     /* copy over the B part */
104557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
104657b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
104757b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1048899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104957b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
105057b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
105157b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
105257b952d6SSatish Balay         for (k=0; k<bs; k++) {
105397e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1054cee3aa6bSSatish Balay           col++; a += bs;
105557b952d6SSatish Balay         }
105657b952d6SSatish Balay       }
105757b952d6SSatish Balay     }
1058606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10596d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10606d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
106155843e3eSBarry Smith     /*
106255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1063b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
106455843e3eSBarry Smith     */
1065b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1066f14a1c24SBarry Smith     if (!rank) {
10677adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10686831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
106957b952d6SSatish Balay     }
1070b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
107157b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
107257b952d6SSatish Balay   }
10733a40ed3dSBarry Smith   PetscFunctionReturn(0);
107457b952d6SSatish Balay }
107557b952d6SSatish Balay 
10764a2ae208SSatish Balay #undef __FUNCT__
10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
107957b952d6SSatish Balay {
1080dfbe8321SBarry Smith   PetscErrorCode ierr;
108132077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
108257b952d6SSatish Balay 
1083d64ed03dSBarry Smith   PetscFunctionBegin;
108432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1085fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1086b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1087fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
108832077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10897b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10905cd90555SBarry Smith   } else {
109179a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
109257b952d6SSatish Balay   }
10933a40ed3dSBarry Smith   PetscFunctionReturn(0);
109457b952d6SSatish Balay }
109557b952d6SSatish Balay 
10964a2ae208SSatish Balay #undef __FUNCT__
10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
109979bdfe76SSatish Balay {
110079bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1101dfbe8321SBarry Smith   PetscErrorCode ierr;
110279bdfe76SSatish Balay 
1103d64ed03dSBarry Smith   PetscFunctionBegin;
1104aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1105d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
110679bdfe76SSatish Balay #endif
11078798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
11088798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
110979bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
111079bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11129c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
111348e59246SSatish Balay #else
111405b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
111548e59246SSatish Balay #endif
111605b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1117606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1118606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
111905b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
112005b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
112105b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
1122899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1123606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1124901853e0SKris Buschelman 
1125dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1126901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1128901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1129901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1130aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1131901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1132901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11333a40ed3dSBarry Smith   PetscFunctionReturn(0);
113479bdfe76SSatish Balay }
113579bdfe76SSatish Balay 
11364a2ae208SSatish Balay #undef __FUNCT__
11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1139cee3aa6bSSatish Balay {
1140cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1141dfbe8321SBarry Smith   PetscErrorCode ierr;
1142b24ad042SBarry Smith   PetscInt       nt;
1143cee3aa6bSSatish Balay 
1144d64ed03dSBarry Smith   PetscFunctionBegin;
1145e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1146d0f46423SBarry Smith   if (nt != A->cmap->n) {
114729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
114847b4a8eaSLois Curfman McInnes   }
1149e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1150d0f46423SBarry Smith   if (nt != A->rmap->n) {
115129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
115247b4a8eaSLois Curfman McInnes   }
1153ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1154f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1155ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1156f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11573a40ed3dSBarry Smith   PetscFunctionReturn(0);
1158cee3aa6bSSatish Balay }
1159cee3aa6bSSatish Balay 
11604a2ae208SSatish Balay #undef __FUNCT__
11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1163cee3aa6bSSatish Balay {
1164cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1165dfbe8321SBarry Smith   PetscErrorCode ierr;
1166d64ed03dSBarry Smith 
1167d64ed03dSBarry Smith   PetscFunctionBegin;
1168ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1169f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1170ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1171f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11723a40ed3dSBarry Smith   PetscFunctionReturn(0);
1173cee3aa6bSSatish Balay }
1174cee3aa6bSSatish Balay 
11754a2ae208SSatish Balay #undef __FUNCT__
11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1178cee3aa6bSSatish Balay {
1179cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1180dfbe8321SBarry Smith   PetscErrorCode ierr;
1181a5ff213dSBarry Smith   PetscTruth     merged;
1182cee3aa6bSSatish Balay 
1183d64ed03dSBarry Smith   PetscFunctionBegin;
1184a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1185cee3aa6bSSatish Balay   /* do nondiagonal part */
11867c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1187a5ff213dSBarry Smith   if (!merged) {
1188cee3aa6bSSatish Balay     /* send it on its way */
1189ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1190cee3aa6bSSatish Balay     /* do local part */
11917c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1192cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1193a5ff213dSBarry Smith     /* inserted in yy until the next line */
1194ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1195a5ff213dSBarry Smith   } else {
1196a5ff213dSBarry Smith     /* do local part */
1197a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1198a5ff213dSBarry Smith     /* send it on its way */
1199ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1200a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1201ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1202a5ff213dSBarry Smith   }
12033a40ed3dSBarry Smith   PetscFunctionReturn(0);
1204cee3aa6bSSatish Balay }
1205cee3aa6bSSatish Balay 
12064a2ae208SSatish Balay #undef __FUNCT__
12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1209cee3aa6bSSatish Balay {
1210cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1211dfbe8321SBarry Smith   PetscErrorCode ierr;
1212cee3aa6bSSatish Balay 
1213d64ed03dSBarry Smith   PetscFunctionBegin;
1214cee3aa6bSSatish Balay   /* do nondiagonal part */
12157c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1216cee3aa6bSSatish Balay   /* send it on its way */
1217ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1218cee3aa6bSSatish Balay   /* do local part */
12197c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1220cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1221cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1222cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1223ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1225cee3aa6bSSatish Balay }
1226cee3aa6bSSatish Balay 
1227cee3aa6bSSatish Balay /*
1228cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1229cee3aa6bSSatish Balay    diagonal block
1230cee3aa6bSSatish Balay */
12314a2ae208SSatish Balay #undef __FUNCT__
12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1234cee3aa6bSSatish Balay {
1235cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1236dfbe8321SBarry Smith   PetscErrorCode ierr;
1237d64ed03dSBarry Smith 
1238d64ed03dSBarry Smith   PetscFunctionBegin;
1239d0f46423SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12403a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12413a40ed3dSBarry Smith   PetscFunctionReturn(0);
1242cee3aa6bSSatish Balay }
1243cee3aa6bSSatish Balay 
12444a2ae208SSatish Balay #undef __FUNCT__
12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1247cee3aa6bSSatish Balay {
1248cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1249dfbe8321SBarry Smith   PetscErrorCode ierr;
1250d64ed03dSBarry Smith 
1251d64ed03dSBarry Smith   PetscFunctionBegin;
1252f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1253f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12543a40ed3dSBarry Smith   PetscFunctionReturn(0);
1255cee3aa6bSSatish Balay }
1256026e39d0SSatish Balay 
12574a2ae208SSatish Balay #undef __FUNCT__
12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1260acdf5bf4SSatish Balay {
1261acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
126287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12636849ba73SBarry Smith   PetscErrorCode ierr;
1264d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1265d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1266899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1267acdf5bf4SSatish Balay 
1268d64ed03dSBarry Smith   PetscFunctionBegin;
1269abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1270acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1271acdf5bf4SSatish Balay 
1272acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1273acdf5bf4SSatish Balay     /*
1274acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1275acdf5bf4SSatish Balay     */
1276acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1277b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1278bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1279acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1280acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1281acdf5bf4SSatish Balay     }
1282b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1283b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1284acdf5bf4SSatish Balay   }
1285acdf5bf4SSatish Balay 
128629bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1287d9d09a02SSatish Balay   lrow = row - brstart;
1288acdf5bf4SSatish Balay 
1289acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1290acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1291acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1292f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1293f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1294acdf5bf4SSatish Balay   nztot = nzA + nzB;
1295acdf5bf4SSatish Balay 
1296acdf5bf4SSatish Balay   cmap  = mat->garray;
1297acdf5bf4SSatish Balay   if (v  || idx) {
1298acdf5bf4SSatish Balay     if (nztot) {
1299acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1300b24ad042SBarry Smith       PetscInt imark = -1;
1301acdf5bf4SSatish Balay       if (v) {
1302acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1303acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1304d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1305acdf5bf4SSatish Balay           else break;
1306acdf5bf4SSatish Balay         }
1307acdf5bf4SSatish Balay         imark = i;
1308acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1309acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1310acdf5bf4SSatish Balay       }
1311acdf5bf4SSatish Balay       if (idx) {
1312acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1313acdf5bf4SSatish Balay         if (imark > -1) {
1314acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1315bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1316acdf5bf4SSatish Balay           }
1317acdf5bf4SSatish Balay         } else {
1318acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1319d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1320d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1321acdf5bf4SSatish Balay             else break;
1322acdf5bf4SSatish Balay           }
1323acdf5bf4SSatish Balay           imark = i;
1324acdf5bf4SSatish Balay         }
1325d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1326d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1327acdf5bf4SSatish Balay       }
1328d64ed03dSBarry Smith     } else {
1329d212a18eSSatish Balay       if (idx) *idx = 0;
1330d212a18eSSatish Balay       if (v)   *v   = 0;
1331d212a18eSSatish Balay     }
1332acdf5bf4SSatish Balay   }
1333acdf5bf4SSatish Balay   *nz = nztot;
1334f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1335f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1337acdf5bf4SSatish Balay }
1338acdf5bf4SSatish Balay 
13394a2ae208SSatish Balay #undef __FUNCT__
13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1342acdf5bf4SSatish Balay {
1343acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1344d64ed03dSBarry Smith 
1345d64ed03dSBarry Smith   PetscFunctionBegin;
1346abc0a331SBarry Smith   if (!baij->getrowactive) {
134729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1348acdf5bf4SSatish Balay   }
1349acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13503a40ed3dSBarry Smith   PetscFunctionReturn(0);
1351acdf5bf4SSatish Balay }
1352acdf5bf4SSatish Balay 
13534a2ae208SSatish Balay #undef __FUNCT__
13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
135658667388SSatish Balay {
135758667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1358dfbe8321SBarry Smith   PetscErrorCode ierr;
1359d64ed03dSBarry Smith 
1360d64ed03dSBarry Smith   PetscFunctionBegin;
136158667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
136258667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13633a40ed3dSBarry Smith   PetscFunctionReturn(0);
136458667388SSatish Balay }
13650ac07820SSatish Balay 
13664a2ae208SSatish Balay #undef __FUNCT__
13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13690ac07820SSatish Balay {
13704e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13714e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1372dfbe8321SBarry Smith   PetscErrorCode ierr;
1373329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13740ac07820SSatish Balay 
1375d64ed03dSBarry Smith   PetscFunctionBegin;
1376d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
13774e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13780e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1379de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13804e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13810e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1382de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13830ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13844e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13854e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13864e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13874e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13884e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13890ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13907adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13914e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13924e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13934e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13944e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13954e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13960ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13977adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13984e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13994e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14004e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14014e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14024e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1403d41123aaSBarry Smith   } else {
140477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14050ac07820SSatish Balay   }
14064e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14074e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14084e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14093a40ed3dSBarry Smith   PetscFunctionReturn(0);
14100ac07820SSatish Balay }
14110ac07820SSatish Balay 
14124a2ae208SSatish Balay #undef __FUNCT__
14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
141558667388SSatish Balay {
141658667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1417dfbe8321SBarry Smith   PetscErrorCode ierr;
141858667388SSatish Balay 
1419d64ed03dSBarry Smith   PetscFunctionBegin;
142012c028f9SKris Buschelman   switch (op) {
1421512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
142212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
142328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1424a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
142512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14264e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14274e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
142812c028f9SKris Buschelman     break;
142912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14304e0d8c25SBarry Smith     a->roworiented = flg;
14314e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14324e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
143312c028f9SKris Buschelman     break;
14344e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1435290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
143612c028f9SKris Buschelman     break;
143712c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14384e0d8c25SBarry Smith     a->donotstash = flg;
143912c028f9SKris Buschelman     break;
144012c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14414e0d8c25SBarry Smith     a->ht_flag = flg;
144212c028f9SKris Buschelman     break;
144377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
144477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14452188ac68SBarry Smith   case MAT_HERMITIAN:
14462188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14474e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
144877e54ba9SKris Buschelman     break;
144912c028f9SKris Buschelman   default:
1450ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1451d64ed03dSBarry Smith   }
14523a40ed3dSBarry Smith   PetscFunctionReturn(0);
145358667388SSatish Balay }
145458667388SSatish Balay 
14554a2ae208SSatish Balay #undef __FUNCT__
14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14580ac07820SSatish Balay {
14590ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14600ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14610ac07820SSatish Balay   Mat            B;
1462dfbe8321SBarry Smith   PetscErrorCode ierr;
1463d0f46423SBarry Smith   PetscInt       M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1464d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
14653eda8832SBarry Smith   MatScalar      *a;
14660ac07820SSatish Balay 
1467d64ed03dSBarry Smith   PetscFunctionBegin;
1468e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1469fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
14707adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1471d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
14727adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1473d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1474fc4dec0aSBarry Smith   } else {
1475fc4dec0aSBarry Smith     B = *matout;
1476fc4dec0aSBarry Smith   }
14770ac07820SSatish Balay 
14780ac07820SSatish Balay   /* copy over the A part */
14790ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14800ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1481b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14820ac07820SSatish Balay 
14830ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1484899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14850ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14860ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1487899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14880ac07820SSatish Balay       for (k=0; k<bs; k++) {
148997e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14900ac07820SSatish Balay         col++; a += bs;
14910ac07820SSatish Balay       }
14920ac07820SSatish Balay     }
14930ac07820SSatish Balay   }
14940ac07820SSatish Balay   /* copy over the B part */
14950ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
14960ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14970ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1498899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14990ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
15000ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15010ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15020ac07820SSatish Balay       for (k=0; k<bs; k++) {
150397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15040ac07820SSatish Balay         col++; a += bs;
15050ac07820SSatish Balay       }
15060ac07820SSatish Balay     }
15070ac07820SSatish Balay   }
1508606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15090ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15100ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15110ac07820SSatish Balay 
1512815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
15130ac07820SSatish Balay     *matout = B;
15140ac07820SSatish Balay   } else {
1515273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
15160ac07820SSatish Balay   }
15173a40ed3dSBarry Smith   PetscFunctionReturn(0);
15180ac07820SSatish Balay }
15190e95ebc0SSatish Balay 
15204a2ae208SSatish Balay #undef __FUNCT__
15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15230e95ebc0SSatish Balay {
152436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
152536c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1526dfbe8321SBarry Smith   PetscErrorCode ierr;
1527b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15280e95ebc0SSatish Balay 
1529d64ed03dSBarry Smith   PetscFunctionBegin;
153036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
153136c4a09eSSatish Balay   if (rr) {
153236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
153329bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
153436c4a09eSSatish Balay     /* Overlap communication with computation. */
1535ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
153636c4a09eSSatish Balay   }
15370e95ebc0SSatish Balay   if (ll) {
15380e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
153929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1540a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15410e95ebc0SSatish Balay   }
154236c4a09eSSatish Balay   /* scale  the diagonal block */
154336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
154436c4a09eSSatish Balay 
154536c4a09eSSatish Balay   if (rr) {
154636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1547ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1548a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
154936c4a09eSSatish Balay   }
155036c4a09eSSatish Balay 
15513a40ed3dSBarry Smith   PetscFunctionReturn(0);
15520e95ebc0SSatish Balay }
15530e95ebc0SSatish Balay 
15544a2ae208SSatish Balay #undef __FUNCT__
15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15570ac07820SSatish Balay {
15580ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15596849ba73SBarry Smith   PetscErrorCode ierr;
1560b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1561d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
1562b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1563b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15647adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1565d0f46423SBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap->rstart;
15667adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15670ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15680ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15696543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15706543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15716543fbbaSBarry Smith #endif
15720ac07820SSatish Balay 
1573d64ed03dSBarry Smith   PetscFunctionBegin;
15740ac07820SSatish Balay   /*  first count number of contributors to each processor */
1575b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1576b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1577b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15786543fbbaSBarry Smith   j = 0;
15790ac07820SSatish Balay   for (i=0; i<N; i++) {
15806543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15816543fbbaSBarry Smith     lastidx = idx;
15826543fbbaSBarry Smith     for (; j<size; j++) {
1583357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15846543fbbaSBarry Smith         nprocs[2*j]++;
15856543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15866543fbbaSBarry Smith         owner[i] = j;
15876543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15886543fbbaSBarry Smith         found = PETSC_TRUE;
15896543fbbaSBarry Smith #endif
15906543fbbaSBarry Smith         break;
15910ac07820SSatish Balay       }
15920ac07820SSatish Balay     }
15936543fbbaSBarry Smith #if defined(PETSC_DEBUG)
159429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15956543fbbaSBarry Smith     found = PETSC_FALSE;
15966543fbbaSBarry Smith #endif
15970ac07820SSatish Balay   }
1598c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
15990ac07820SSatish Balay 
16000ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1601c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
16020ac07820SSatish Balay 
16030ac07820SSatish Balay   /* post receives:   */
1604b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1605b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
16060ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1607b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16080ac07820SSatish Balay   }
16090ac07820SSatish Balay 
16100ac07820SSatish Balay   /* do sends:
16110ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16120ac07820SSatish Balay      the ith processor
16130ac07820SSatish Balay   */
1614b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1615b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1616b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16170ac07820SSatish Balay   starts[0]  = 0;
1618c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16190ac07820SSatish Balay   for (i=0; i<N; i++) {
16200ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16210ac07820SSatish Balay   }
16220ac07820SSatish Balay 
16230ac07820SSatish Balay   starts[0] = 0;
1624c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16250ac07820SSatish Balay   count = 0;
16260ac07820SSatish Balay   for (i=0; i<size; i++) {
1627c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1628b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16290ac07820SSatish Balay     }
16300ac07820SSatish Balay   }
1631606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16320ac07820SSatish Balay 
1633357c27ecSBarry Smith   base = owners[rank];
16340ac07820SSatish Balay 
16350ac07820SSatish Balay   /*  wait on receives */
1636b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
16370ac07820SSatish Balay   source = lens + nrecvs;
16380ac07820SSatish Balay   count  = nrecvs; slen = 0;
16390ac07820SSatish Balay   while (count) {
1640ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16410ac07820SSatish Balay     /* unpack receives into our local space */
1642b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16430ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16440ac07820SSatish Balay     lens[imdex]    = n;
16450ac07820SSatish Balay     slen          += n;
16460ac07820SSatish Balay     count--;
16470ac07820SSatish Balay   }
1648606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16490ac07820SSatish Balay 
16500ac07820SSatish Balay   /* move the data into the send scatter */
1651b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16520ac07820SSatish Balay   count = 0;
16530ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16540ac07820SSatish Balay     values = rvalues + i*nmax;
16550ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16560ac07820SSatish Balay       lrows[count++] = values[j] - base;
16570ac07820SSatish Balay     }
16580ac07820SSatish Balay   }
1659606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1660606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1661606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1662606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16630ac07820SSatish Balay 
16640ac07820SSatish Balay   /* actually zap the local rows */
166572dacd9aSBarry Smith   /*
166672dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1667a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
166872dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
166972dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
167072dacd9aSBarry Smith 
1671f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
167272dacd9aSBarry Smith   */
16739c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1674f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1675d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1676f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1677f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1678f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1679fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
168029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1681512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
16826525c446SSatish Balay     }
1683a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1684a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1685f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1686a07cd24cSSatish Balay     }
1687a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1688a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16899c957beeSSatish Balay   } else {
1690f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1691a07cd24cSSatish Balay   }
16929c957beeSSatish Balay 
1693606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1694a07cd24cSSatish Balay 
16950ac07820SSatish Balay   /* wait on sends */
16960ac07820SSatish Balay   if (nsends) {
169782502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1698ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1699606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
17000ac07820SSatish Balay   }
1701606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1702606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
17030ac07820SSatish Balay 
17043a40ed3dSBarry Smith   PetscFunctionReturn(0);
17050ac07820SSatish Balay }
170672dacd9aSBarry Smith 
17074a2ae208SSatish Balay #undef __FUNCT__
17084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1709dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1710bb5a7306SBarry Smith {
1711bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1712dfbe8321SBarry Smith   PetscErrorCode ierr;
1713d64ed03dSBarry Smith 
1714d64ed03dSBarry Smith   PetscFunctionBegin;
1715bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17163a40ed3dSBarry Smith   PetscFunctionReturn(0);
1717bb5a7306SBarry Smith }
1718bb5a7306SBarry Smith 
17196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17200ac07820SSatish Balay 
17214a2ae208SSatish Balay #undef __FUNCT__
17224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1723dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17247fc3c18eSBarry Smith {
17257fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17267fc3c18eSBarry Smith   Mat            a,b,c,d;
17277fc3c18eSBarry Smith   PetscTruth     flg;
1728dfbe8321SBarry Smith   PetscErrorCode ierr;
17297fc3c18eSBarry Smith 
17307fc3c18eSBarry Smith   PetscFunctionBegin;
17317fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17327fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17337fc3c18eSBarry Smith 
17347fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1735abc0a331SBarry Smith   if (flg) {
17367fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17377fc3c18eSBarry Smith   }
17387adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17397fc3c18eSBarry Smith   PetscFunctionReturn(0);
17407fc3c18eSBarry Smith }
17417fc3c18eSBarry Smith 
17423c896bc6SHong Zhang #undef __FUNCT__
17433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17453c896bc6SHong Zhang {
17463c896bc6SHong Zhang   PetscErrorCode ierr;
17473c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17483c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17493c896bc6SHong Zhang 
17503c896bc6SHong Zhang   PetscFunctionBegin;
17513c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17523c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17533c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17543c896bc6SHong Zhang   } else {
17553c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17563c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17573c896bc6SHong Zhang   }
17583c896bc6SHong Zhang   PetscFunctionReturn(0);
17593c896bc6SHong Zhang }
1760273d9f13SBarry Smith 
17614a2ae208SSatish Balay #undef __FUNCT__
17624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1763dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1764273d9f13SBarry Smith {
1765dfbe8321SBarry Smith   PetscErrorCode ierr;
1766273d9f13SBarry Smith 
1767273d9f13SBarry Smith   PetscFunctionBegin;
1768db4efbfdSBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1769273d9f13SBarry Smith   PetscFunctionReturn(0);
1770273d9f13SBarry Smith }
1771273d9f13SBarry Smith 
17724fe895cdSHong Zhang #include "petscblaslapack.h"
17734fe895cdSHong Zhang #undef __FUNCT__
17744fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17764fe895cdSHong Zhang {
17774fe895cdSHong Zhang   PetscErrorCode ierr;
17784fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17794fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17804fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17814fe895cdSHong Zhang 
17824fe895cdSHong Zhang   PetscFunctionBegin;
17834fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17844fe895cdSHong Zhang     PetscScalar alpha = a;
17854fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17864fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17870805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17884fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17894fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17904fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17910805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17934fe895cdSHong Zhang   } else {
17944fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17954fe895cdSHong Zhang   }
17964fe895cdSHong Zhang   PetscFunctionReturn(0);
17974fe895cdSHong Zhang }
17984fe895cdSHong Zhang 
179999cafbc1SBarry Smith #undef __FUNCT__
180099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
180199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
180299cafbc1SBarry Smith {
180399cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
180499cafbc1SBarry Smith   PetscErrorCode ierr;
180599cafbc1SBarry Smith 
180699cafbc1SBarry Smith   PetscFunctionBegin;
180799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
180899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
180999cafbc1SBarry Smith   PetscFunctionReturn(0);
181099cafbc1SBarry Smith }
181199cafbc1SBarry Smith 
181299cafbc1SBarry Smith #undef __FUNCT__
181399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
181499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
181599cafbc1SBarry Smith {
181699cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
181799cafbc1SBarry Smith   PetscErrorCode ierr;
181899cafbc1SBarry Smith 
181999cafbc1SBarry Smith   PetscFunctionBegin;
182099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
182199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
182299cafbc1SBarry Smith   PetscFunctionReturn(0);
182399cafbc1SBarry Smith }
182499cafbc1SBarry Smith 
182582094794SBarry Smith #undef __FUNCT__
182682094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
18274aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
18284aa3045dSJed Brown {
18294aa3045dSJed Brown   PetscErrorCode ierr;
18304aa3045dSJed Brown   IS             iscol_local;
18314aa3045dSJed Brown   PetscInt       csize;
18324aa3045dSJed Brown 
18334aa3045dSJed Brown   PetscFunctionBegin;
18344aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1835b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1836b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1837b79d0421SJed Brown     if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1838b79d0421SJed Brown   } else {
18394aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1840b79d0421SJed Brown   }
18414aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1842b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1843b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
18444aa3045dSJed Brown     ierr = ISDestroy(iscol_local);CHKERRQ(ierr);
1845b79d0421SJed Brown   }
18464aa3045dSJed Brown   PetscFunctionReturn(0);
18474aa3045dSJed Brown }
18484aa3045dSJed Brown 
18494aa3045dSJed Brown #undef __FUNCT__
18504aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
185182094794SBarry Smith /*
185282094794SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqBAIJ
185382094794SBarry Smith   in local and then by concatenating the local matrices the end result.
185482094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
185582094794SBarry Smith */
18564aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
185782094794SBarry Smith {
185882094794SBarry Smith   PetscErrorCode ierr;
185982094794SBarry Smith   PetscMPIInt    rank,size;
186082094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
186182094794SBarry Smith   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
186282094794SBarry Smith   Mat            *local,M,Mreuse;
186382094794SBarry Smith   MatScalar      *vwork,*aa;
186482094794SBarry Smith   MPI_Comm       comm = ((PetscObject)mat)->comm;
186582094794SBarry Smith   Mat_SeqBAIJ    *aij;
186682094794SBarry Smith 
186782094794SBarry Smith 
186882094794SBarry Smith   PetscFunctionBegin;
186982094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
187082094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
187182094794SBarry Smith 
187282094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
187382094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
187482094794SBarry Smith     if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
187582094794SBarry Smith     local = &Mreuse;
187682094794SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
187782094794SBarry Smith   } else {
187882094794SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
187982094794SBarry Smith     Mreuse = *local;
188082094794SBarry Smith     ierr   = PetscFree(local);CHKERRQ(ierr);
188182094794SBarry Smith   }
188282094794SBarry Smith 
188382094794SBarry Smith   /*
188482094794SBarry Smith       m - number of local rows
188582094794SBarry Smith       n - number of columns (same on all processors)
188682094794SBarry Smith       rstart - first row in new global matrix generated
188782094794SBarry Smith   */
188882094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
188982094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
189082094794SBarry Smith   m    = m/bs;
189182094794SBarry Smith   n    = n/bs;
189282094794SBarry Smith 
189382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
189482094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
189582094794SBarry Smith     ii  = aij->i;
189682094794SBarry Smith     jj  = aij->j;
189782094794SBarry Smith 
189882094794SBarry Smith     /*
189982094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
190082094794SBarry Smith         portions of the matrix in order to do correct preallocation
190182094794SBarry Smith     */
190282094794SBarry Smith 
190382094794SBarry Smith     /* first get start and end of "diagonal" columns */
190482094794SBarry Smith     if (csize == PETSC_DECIDE) {
190582094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
190682094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
190782094794SBarry Smith 	nlocal = m;
190882094794SBarry Smith       } else {
190982094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
191082094794SBarry Smith       }
191182094794SBarry Smith     } else {
191282094794SBarry Smith       nlocal = csize/bs;
191382094794SBarry Smith     }
191482094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
191582094794SBarry Smith     rstart = rend - nlocal;
191682094794SBarry Smith     if (rank == size - 1 && rend != n) {
191782094794SBarry Smith       SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
191882094794SBarry Smith     }
191982094794SBarry Smith 
192082094794SBarry Smith     /* next, compute all the lengths */
192182094794SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
192282094794SBarry Smith     olens = dlens + m;
192382094794SBarry Smith     for (i=0; i<m; i++) {
192482094794SBarry Smith       jend = ii[i+1] - ii[i];
192582094794SBarry Smith       olen = 0;
192682094794SBarry Smith       dlen = 0;
192782094794SBarry Smith       for (j=0; j<jend; j++) {
192882094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
192982094794SBarry Smith         else dlen++;
193082094794SBarry Smith         jj++;
193182094794SBarry Smith       }
193282094794SBarry Smith       olens[i] = olen;
193382094794SBarry Smith       dlens[i] = dlen;
193482094794SBarry Smith     }
193582094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
193682094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
193782094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
193882094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
193982094794SBarry Smith     ierr = PetscFree(dlens);CHKERRQ(ierr);
194082094794SBarry Smith   } else {
194182094794SBarry Smith     PetscInt ml,nl;
194282094794SBarry Smith 
194382094794SBarry Smith     M = *newmat;
194482094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
194582094794SBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
194682094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
194782094794SBarry Smith     /*
194882094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
194982094794SBarry Smith        rather than the slower MatSetValues().
195082094794SBarry Smith     */
195182094794SBarry Smith     M->was_assembled = PETSC_TRUE;
195282094794SBarry Smith     M->assembled     = PETSC_FALSE;
195382094794SBarry Smith   }
195482094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
195582094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
195682094794SBarry Smith   aij = (Mat_SeqBAIJ*)(Mreuse)->data;
195782094794SBarry Smith   ii  = aij->i;
195882094794SBarry Smith   jj  = aij->j;
195982094794SBarry Smith   aa  = aij->a;
196082094794SBarry Smith   for (i=0; i<m; i++) {
196182094794SBarry Smith     row   = rstart/bs + i;
196282094794SBarry Smith     nz    = ii[i+1] - ii[i];
196382094794SBarry Smith     cwork = jj;     jj += nz;
196482094794SBarry Smith     vwork = aa;     aa += nz;
196582094794SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
196682094794SBarry Smith   }
196782094794SBarry Smith 
196882094794SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
196982094794SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
197082094794SBarry Smith   *newmat = M;
197182094794SBarry Smith 
197282094794SBarry Smith   /* save submatrix used in processor for next request */
197382094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
197482094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
197582094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
197682094794SBarry Smith   }
197782094794SBarry Smith 
197882094794SBarry Smith   PetscFunctionReturn(0);
197982094794SBarry Smith }
198082094794SBarry Smith 
198182094794SBarry Smith #undef __FUNCT__
198282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
198382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
198482094794SBarry Smith {
198582094794SBarry Smith   MPI_Comm       comm,pcomm;
198682094794SBarry Smith   PetscInt       first,local_size,nrows;
198782094794SBarry Smith   const PetscInt *rows;
1988dbf0e21dSBarry Smith   PetscMPIInt    size;
198982094794SBarry Smith   IS             crowp,growp,irowp,lrowp,lcolp,icolp;
199082094794SBarry Smith   PetscErrorCode ierr;
199182094794SBarry Smith 
199282094794SBarry Smith   PetscFunctionBegin;
199382094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
199482094794SBarry Smith   /* make a collective version of 'rowp' */
199582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
199682094794SBarry Smith   if (pcomm==comm) {
199782094794SBarry Smith     crowp = rowp;
199882094794SBarry Smith   } else {
199982094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
200082094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
200182094794SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr);
200282094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
200382094794SBarry Smith   }
200482094794SBarry Smith   /* collect the global row permutation and invert it */
200582094794SBarry Smith   ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr);
200682094794SBarry Smith   ierr = ISSetPermutation(growp);CHKERRQ(ierr);
200782094794SBarry Smith   if (pcomm!=comm) {
200882094794SBarry Smith     ierr = ISDestroy(crowp);CHKERRQ(ierr);
200982094794SBarry Smith   }
201082094794SBarry Smith   ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr);
201182094794SBarry Smith   /* get the local target indices */
201282094794SBarry Smith   ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr);
201382094794SBarry Smith   ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr);
201482094794SBarry Smith   ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr);
201582094794SBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr);
201682094794SBarry Smith   ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr);
201782094794SBarry Smith   ierr = ISDestroy(irowp);CHKERRQ(ierr);
201882094794SBarry Smith   /* the column permutation is so much easier;
201982094794SBarry Smith      make a local version of 'colp' and invert it */
202082094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2021dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2022dbf0e21dSBarry Smith   if (size==1) {
202382094794SBarry Smith     lcolp = colp;
202482094794SBarry Smith   } else {
202582094794SBarry Smith     ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr);
202682094794SBarry Smith     ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr);
202782094794SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr);
202882094794SBarry Smith   }
2029dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
203082094794SBarry Smith   ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr);
20314aa3045dSJed Brown   ierr = ISSetPermutation(icolp);CHKERRQ(ierr);
2032dbf0e21dSBarry Smith   if (size>1) {
203382094794SBarry Smith     ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr);
203482094794SBarry Smith     ierr = ISDestroy(lcolp);CHKERRQ(ierr);
203582094794SBarry Smith   }
203682094794SBarry Smith   /* now we just get the submatrix */
20374aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
203882094794SBarry Smith   /* clean up */
203982094794SBarry Smith   ierr = ISDestroy(lrowp);CHKERRQ(ierr);
204082094794SBarry Smith   ierr = ISDestroy(icolp);CHKERRQ(ierr);
204182094794SBarry Smith   PetscFunctionReturn(0);
204282094794SBarry Smith }
204382094794SBarry Smith 
20448c7482ecSBarry Smith #undef __FUNCT__
20458c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
20468c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
20478c7482ecSBarry Smith {
20488c7482ecSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*) mat->data;
20498c7482ecSBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
20508c7482ecSBarry Smith 
20518c7482ecSBarry Smith   PetscFunctionBegin;
20528c7482ecSBarry Smith   if (nghosts) { *nghosts = B->nbs;}
20538c7482ecSBarry Smith   if (ghosts) {*ghosts = baij->garray;}
20548c7482ecSBarry Smith   PetscFunctionReturn(0);
20558c7482ecSBarry Smith }
20568c7482ecSBarry Smith 
2057*f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat);
2058*f6d58c54SBarry Smith 
2059*f6d58c54SBarry Smith #undef __FUNCT__
2060*f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ"
2061*f6d58c54SBarry Smith /*
2062*f6d58c54SBarry Smith     This routine is almost identical to MatFDColoringCreate_MPIBAIJ()!
2063*f6d58c54SBarry Smith */
2064*f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c)
2065*f6d58c54SBarry Smith {
2066*f6d58c54SBarry Smith   Mat_MPIBAIJ            *baij = (Mat_MPIBAIJ*)mat->data;
2067*f6d58c54SBarry Smith   PetscErrorCode        ierr;
2068*f6d58c54SBarry Smith   PetscMPIInt           size,*ncolsonproc,*disp,nn;
2069*f6d58c54SBarry Smith   PetscInt              bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col;
2070*f6d58c54SBarry Smith   const PetscInt        *is;
2071*f6d58c54SBarry Smith   PetscInt              nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj;
2072*f6d58c54SBarry Smith   PetscInt              *rowhit,M,cstart,cend,colb;
2073*f6d58c54SBarry Smith   PetscInt              *columnsforrow,l;
2074*f6d58c54SBarry Smith   IS                    *isa;
2075*f6d58c54SBarry Smith   PetscTruth             done,flg;
2076*f6d58c54SBarry Smith   ISLocalToGlobalMapping map = mat->bmapping;
2077*f6d58c54SBarry Smith   PetscInt               *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype;
2078*f6d58c54SBarry Smith 
2079*f6d58c54SBarry Smith   PetscFunctionBegin;
2080*f6d58c54SBarry Smith   if (!mat->assembled) {
2081*f6d58c54SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();");
2082*f6d58c54SBarry Smith   }
2083*f6d58c54SBarry Smith   if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock");
2084*f6d58c54SBarry Smith 
2085*f6d58c54SBarry Smith   ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr);
2086*f6d58c54SBarry Smith 
2087*f6d58c54SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
2088*f6d58c54SBarry Smith   M                = mat->rmap->n/bs;
2089*f6d58c54SBarry Smith   cstart           = mat->cmap->rstart/bs;
2090*f6d58c54SBarry Smith   cend             = mat->cmap->rend/bs;
2091*f6d58c54SBarry Smith   c->M             = mat->rmap->N/bs;  /* set the global rows and columns and local rows */
2092*f6d58c54SBarry Smith   c->N             = mat->cmap->N/bs;
2093*f6d58c54SBarry Smith   c->m             = mat->rmap->n/bs;
2094*f6d58c54SBarry Smith   c->rstart        = mat->rmap->rstart/bs;
2095*f6d58c54SBarry Smith 
2096*f6d58c54SBarry Smith   c->ncolors       = nis;
2097*f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr);
2098*f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr);
2099*f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr);
2100*f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr);
2101*f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr);
2102*f6d58c54SBarry Smith   ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr);
2103*f6d58c54SBarry Smith 
2104*f6d58c54SBarry Smith   /* Allow access to data structures of local part of matrix */
2105*f6d58c54SBarry Smith   if (!baij->colmap) {
2106*f6d58c54SBarry Smith     ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
2107*f6d58c54SBarry Smith   }
2108*f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2109*f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2110*f6d58c54SBarry Smith 
2111*f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr);
2112*f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr);
2113*f6d58c54SBarry Smith 
2114*f6d58c54SBarry Smith   for (i=0; i<nis; i++) {
2115*f6d58c54SBarry Smith     ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr);
2116*f6d58c54SBarry Smith     ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr);
2117*f6d58c54SBarry Smith     c->ncolumns[i] = n;
2118*f6d58c54SBarry Smith     if (n) {
2119*f6d58c54SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr);
2120*f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr);
2121*f6d58c54SBarry Smith       ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr);
2122*f6d58c54SBarry Smith     } else {
2123*f6d58c54SBarry Smith       c->columns[i]  = 0;
2124*f6d58c54SBarry Smith     }
2125*f6d58c54SBarry Smith 
2126*f6d58c54SBarry Smith     if (ctype == IS_COLORING_GLOBAL){
2127*f6d58c54SBarry Smith       /* Determine the total (parallel) number of columns of this color */
2128*f6d58c54SBarry Smith       ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
2129*f6d58c54SBarry Smith       ierr = PetscMalloc(2*size*sizeof(PetscInt*),&ncolsonproc);CHKERRQ(ierr);
2130*f6d58c54SBarry Smith       disp = ncolsonproc + size;
2131*f6d58c54SBarry Smith 
2132*f6d58c54SBarry Smith       nn   = PetscMPIIntCast(n);
2133*f6d58c54SBarry Smith       ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2134*f6d58c54SBarry Smith       nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];}
2135*f6d58c54SBarry Smith       if (!nctot) {
2136*f6d58c54SBarry Smith         ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr);
2137*f6d58c54SBarry Smith       }
2138*f6d58c54SBarry Smith 
2139*f6d58c54SBarry Smith       disp[0] = 0;
2140*f6d58c54SBarry Smith       for (j=1; j<size; j++) {
2141*f6d58c54SBarry Smith         disp[j] = disp[j-1] + ncolsonproc[j-1];
2142*f6d58c54SBarry Smith       }
2143*f6d58c54SBarry Smith 
2144*f6d58c54SBarry Smith       /* Get complete list of columns for color on each processor */
2145*f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2146*f6d58c54SBarry Smith       ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2147*f6d58c54SBarry Smith       ierr = PetscFree(ncolsonproc);CHKERRQ(ierr);
2148*f6d58c54SBarry Smith     } else if (ctype == IS_COLORING_GHOSTED){
2149*f6d58c54SBarry Smith       /* Determine local number of columns of this color on this process, including ghost points */
2150*f6d58c54SBarry Smith       nctot = n;
2151*f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2152*f6d58c54SBarry Smith       ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr);
2153*f6d58c54SBarry Smith     } else {
2154*f6d58c54SBarry Smith       SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type");
2155*f6d58c54SBarry Smith     }
2156*f6d58c54SBarry Smith 
2157*f6d58c54SBarry Smith     /*
2158*f6d58c54SBarry Smith        Mark all rows affect by these columns
2159*f6d58c54SBarry Smith     */
2160*f6d58c54SBarry Smith     /* Temporary option to allow for debugging/testing */
2161*f6d58c54SBarry Smith     flg  = PETSC_FALSE;
2162*f6d58c54SBarry Smith     ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr);
2163*f6d58c54SBarry Smith     if (!flg) {/*-----------------------------------------------------------------------------*/
2164*f6d58c54SBarry Smith       /* crude, fast version */
2165*f6d58c54SBarry Smith       ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr);
2166*f6d58c54SBarry Smith       /* loop over columns*/
2167*f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2168*f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2169*f6d58c54SBarry Smith           col = ltog[cols[j]];
2170*f6d58c54SBarry Smith         } else {
2171*f6d58c54SBarry Smith           col  = cols[j];
2172*f6d58c54SBarry Smith         }
2173*f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2174*f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2175*f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2176*f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2177*f6d58c54SBarry Smith         } else {
2178*f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2179*f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr)
2180*f6d58c54SBarry Smith 	  colb --;
2181*f6d58c54SBarry Smith #else
2182*f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2183*f6d58c54SBarry Smith #endif
2184*f6d58c54SBarry Smith           if (colb == -1) {
2185*f6d58c54SBarry Smith             m = 0;
2186*f6d58c54SBarry Smith           } else {
2187*f6d58c54SBarry Smith             colb = colb/bs;
2188*f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2189*f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2190*f6d58c54SBarry Smith           }
2191*f6d58c54SBarry Smith         }
2192*f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2193*f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2194*f6d58c54SBarry Smith           rowhit[*rows++] = col + 1;
2195*f6d58c54SBarry Smith         }
2196*f6d58c54SBarry Smith       }
2197*f6d58c54SBarry Smith 
2198*f6d58c54SBarry Smith       /* count the number of hits */
2199*f6d58c54SBarry Smith       nrows = 0;
2200*f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2201*f6d58c54SBarry Smith         if (rowhit[j]) nrows++;
2202*f6d58c54SBarry Smith       }
2203*f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2204*f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2205*f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2206*f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2207*f6d58c54SBarry Smith       nrows = 0;
2208*f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2209*f6d58c54SBarry Smith         if (rowhit[j]) {
2210*f6d58c54SBarry Smith           c->rows[i][nrows]           = j;
2211*f6d58c54SBarry Smith           c->columnsforrow[i][nrows] = rowhit[j] - 1;
2212*f6d58c54SBarry Smith           nrows++;
2213*f6d58c54SBarry Smith         }
2214*f6d58c54SBarry Smith       }
2215*f6d58c54SBarry Smith     } else {/*-------------------------------------------------------------------------------*/
2216*f6d58c54SBarry Smith       /* slow version, using rowhit as a linked list */
2217*f6d58c54SBarry Smith       PetscInt currentcol,fm,mfm;
2218*f6d58c54SBarry Smith       rowhit[M] = M;
2219*f6d58c54SBarry Smith       nrows     = 0;
2220*f6d58c54SBarry Smith       /* loop over columns*/
2221*f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2222*f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2223*f6d58c54SBarry Smith           col = ltog[cols[j]];
2224*f6d58c54SBarry Smith         } else {
2225*f6d58c54SBarry Smith           col  = cols[j];
2226*f6d58c54SBarry Smith         }
2227*f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2228*f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2229*f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2230*f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2231*f6d58c54SBarry Smith         } else {
2232*f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2233*f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2234*f6d58c54SBarry Smith           colb --;
2235*f6d58c54SBarry Smith #else
2236*f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2237*f6d58c54SBarry Smith #endif
2238*f6d58c54SBarry Smith           if (colb == -1) {
2239*f6d58c54SBarry Smith             m = 0;
2240*f6d58c54SBarry Smith           } else {
2241*f6d58c54SBarry Smith             colb = colb/bs;
2242*f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2243*f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2244*f6d58c54SBarry Smith           }
2245*f6d58c54SBarry Smith         }
2246*f6d58c54SBarry Smith 
2247*f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2248*f6d58c54SBarry Smith         fm    = M; /* fm points to first entry in linked list */
2249*f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2250*f6d58c54SBarry Smith           currentcol = *rows++;
2251*f6d58c54SBarry Smith 	  /* is it already in the list? */
2252*f6d58c54SBarry Smith           do {
2253*f6d58c54SBarry Smith             mfm  = fm;
2254*f6d58c54SBarry Smith             fm   = rowhit[fm];
2255*f6d58c54SBarry Smith           } while (fm < currentcol);
2256*f6d58c54SBarry Smith           /* not in list so add it */
2257*f6d58c54SBarry Smith           if (fm != currentcol) {
2258*f6d58c54SBarry Smith             nrows++;
2259*f6d58c54SBarry Smith             columnsforrow[currentcol] = col;
2260*f6d58c54SBarry Smith             /* next three lines insert new entry into linked list */
2261*f6d58c54SBarry Smith             rowhit[mfm]               = currentcol;
2262*f6d58c54SBarry Smith             rowhit[currentcol]        = fm;
2263*f6d58c54SBarry Smith             fm                        = currentcol;
2264*f6d58c54SBarry Smith             /* fm points to present position in list since we know the columns are sorted */
2265*f6d58c54SBarry Smith           } else {
2266*f6d58c54SBarry Smith             SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected");
2267*f6d58c54SBarry Smith           }
2268*f6d58c54SBarry Smith         }
2269*f6d58c54SBarry Smith       }
2270*f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2271*f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2272*f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2273*f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2274*f6d58c54SBarry Smith       /* now store the linked list of rows into c->rows[i] */
2275*f6d58c54SBarry Smith       nrows = 0;
2276*f6d58c54SBarry Smith       fm    = rowhit[M];
2277*f6d58c54SBarry Smith       do {
2278*f6d58c54SBarry Smith         c->rows[i][nrows]            = fm;
2279*f6d58c54SBarry Smith         c->columnsforrow[i][nrows++] = columnsforrow[fm];
2280*f6d58c54SBarry Smith         fm                           = rowhit[fm];
2281*f6d58c54SBarry Smith       } while (fm < M);
2282*f6d58c54SBarry Smith     } /* ---------------------------------------------------------------------------------------*/
2283*f6d58c54SBarry Smith     ierr = PetscFree(cols);CHKERRQ(ierr);
2284*f6d58c54SBarry Smith   }
2285*f6d58c54SBarry Smith 
2286*f6d58c54SBarry Smith   /* Optimize by adding the vscale, and scaleforrow[][] fields */
2287*f6d58c54SBarry Smith   /*
2288*f6d58c54SBarry Smith        vscale will contain the "diagonal" on processor scalings followed by the off processor
2289*f6d58c54SBarry Smith   */
2290*f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) {
2291*f6d58c54SBarry Smith     PetscInt *garray;
2292*f6d58c54SBarry Smith     ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr);
2293*f6d58c54SBarry Smith     for (i=0; i<baij->B->cmap->n/bs; i++) {
2294*f6d58c54SBarry Smith       for (j=0; j<bs; j++) {
2295*f6d58c54SBarry Smith         garray[i*bs+j] = bs*baij->garray[i]+j;
2296*f6d58c54SBarry Smith       }
2297*f6d58c54SBarry Smith     }
2298*f6d58c54SBarry Smith     ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr);
2299*f6d58c54SBarry Smith     ierr = PetscFree(garray);CHKERRQ(ierr);
2300*f6d58c54SBarry Smith     CHKMEMQ;
2301*f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2302*f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2303*f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2304*f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2305*f6d58c54SBarry Smith         col = c->columnsforrow[k][l];
2306*f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2307*f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2308*f6d58c54SBarry Smith           colb = col - cstart;
2309*f6d58c54SBarry Smith         } else {
2310*f6d58c54SBarry Smith           /* column  is in "off-processor" part */
2311*f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2312*f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2313*f6d58c54SBarry Smith           colb --;
2314*f6d58c54SBarry Smith #else
2315*f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2316*f6d58c54SBarry Smith #endif
2317*f6d58c54SBarry Smith           colb = colb/bs;
2318*f6d58c54SBarry Smith           colb += cend - cstart;
2319*f6d58c54SBarry Smith         }
2320*f6d58c54SBarry Smith         c->vscaleforrow[k][l] = colb;
2321*f6d58c54SBarry Smith       }
2322*f6d58c54SBarry Smith     }
2323*f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GHOSTED) {
2324*f6d58c54SBarry Smith     /* Get gtol mapping */
2325*f6d58c54SBarry Smith     PetscInt N = mat->cmap->N, *gtol;
2326*f6d58c54SBarry Smith     ierr = PetscMalloc((N+1)*sizeof(PetscInt),&gtol);CHKERRQ(ierr);
2327*f6d58c54SBarry Smith     for (i=0; i<N; i++) gtol[i] = -1;
2328*f6d58c54SBarry Smith     for (i=0; i<map->n; i++) gtol[ltog[i]] = i;
2329*f6d58c54SBarry Smith 
2330*f6d58c54SBarry Smith     c->vscale = 0; /* will be created in MatFDColoringApply() */
2331*f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2332*f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2333*f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2334*f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2335*f6d58c54SBarry Smith         col = c->columnsforrow[k][l];      /* global column index */
2336*f6d58c54SBarry Smith         c->vscaleforrow[k][l] = gtol[col]; /* local column index */
2337*f6d58c54SBarry Smith       }
2338*f6d58c54SBarry Smith     }
2339*f6d58c54SBarry Smith     ierr = PetscFree(gtol);CHKERRQ(ierr);
2340*f6d58c54SBarry Smith   }
2341*f6d58c54SBarry Smith   ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr);
2342*f6d58c54SBarry Smith 
2343*f6d58c54SBarry Smith   ierr = PetscFree(rowhit);CHKERRQ(ierr);
2344*f6d58c54SBarry Smith   ierr = PetscFree(columnsforrow);CHKERRQ(ierr);
2345*f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2346*f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2347*f6d58c54SBarry Smith     CHKMEMQ;
2348*f6d58c54SBarry Smith   PetscFunctionReturn(0);
2349*f6d58c54SBarry Smith }
2350*f6d58c54SBarry Smith 
2351*f6d58c54SBarry Smith #undef __FUNCT__
2352*f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ"
2353*f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat)
2354*f6d58c54SBarry Smith {
2355*f6d58c54SBarry Smith   Mat            B;
2356*f6d58c54SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
2357*f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2358*f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2359*f6d58c54SBarry Smith   PetscErrorCode ierr;
2360*f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2361*f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2362*f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2363*f6d58c54SBarry Smith 
2364*f6d58c54SBarry Smith   PetscFunctionBegin;
2365*f6d58c54SBarry Smith   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2366*f6d58c54SBarry Smith   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2367*f6d58c54SBarry Smith 
2368*f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2369*f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2370*f6d58c54SBarry Smith   */
2371*f6d58c54SBarry Smith   ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
2372*f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2373*f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2374*f6d58c54SBarry Smith   }
2375*f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2376*f6d58c54SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr);
2377*f6d58c54SBarry Smith   displs     = recvcounts + size;
2378*f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2379*f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2380*f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2381*f6d58c54SBarry Smith   }
2382*f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2383*f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2384*f6d58c54SBarry Smith #else
2385*f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2386*f6d58c54SBarry Smith #endif
2387*f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2388*f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2389*f6d58c54SBarry Smith   */
2390*f6d58c54SBarry Smith   ierr  = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2391*f6d58c54SBarry Smith   ierr  = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2392*f6d58c54SBarry Smith   ierr  = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2393*f6d58c54SBarry Smith   ierr  = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2394*f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2395*f6d58c54SBarry Smith 
2396*f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2397*f6d58c54SBarry Smith     Copy my part of matrix column indices over
2398*f6d58c54SBarry Smith   */
2399*f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2400*f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2401*f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2402*f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2403*f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2404*f6d58c54SBarry Smith   cnt        = 0;
2405*f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2406*f6d58c54SBarry Smith 
2407*f6d58c54SBarry Smith     /* put in lower diagonal portion */
2408*f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2409*f6d58c54SBarry Smith     while (m > 0) {
2410*f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2411*f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2412*f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2413*f6d58c54SBarry Smith       m--;
2414*f6d58c54SBarry Smith     }
2415*f6d58c54SBarry Smith 
2416*f6d58c54SBarry Smith     /* put in diagonal portion */
2417*f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2418*f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2419*f6d58c54SBarry Smith     }
2420*f6d58c54SBarry Smith 
2421*f6d58c54SBarry Smith     /* put in upper diagonal portion */
2422*f6d58c54SBarry Smith     while (m-- > 0) {
2423*f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2424*f6d58c54SBarry Smith     }
2425*f6d58c54SBarry Smith   }
2426*f6d58c54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2427*f6d58c54SBarry Smith 
2428*f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2429*f6d58c54SBarry Smith     Gather all column indices to all processors
2430*f6d58c54SBarry Smith   */
2431*f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2432*f6d58c54SBarry Smith     recvcounts[i] = 0;
2433*f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2434*f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2435*f6d58c54SBarry Smith     }
2436*f6d58c54SBarry Smith   }
2437*f6d58c54SBarry Smith   displs[0]  = 0;
2438*f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2439*f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2440*f6d58c54SBarry Smith   }
2441*f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2442*f6d58c54SBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2443*f6d58c54SBarry Smith #else
2444*f6d58c54SBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2445*f6d58c54SBarry Smith #endif
2446*f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2447*f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2448*f6d58c54SBarry Smith   */
2449*f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2450*f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2451*f6d58c54SBarry Smith   /* set the b->i indices */
2452*f6d58c54SBarry Smith   b->i[0] = 0;
2453*f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2454*f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2455*f6d58c54SBarry Smith   }
2456*f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2457*f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2458*f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2459*f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2460*f6d58c54SBarry Smith 
2461*f6d58c54SBarry Smith   if (A->symmetric){
2462*f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2463*f6d58c54SBarry Smith   } else if (A->hermitian) {
2464*f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2465*f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2466*f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2467*f6d58c54SBarry Smith   }
2468*f6d58c54SBarry Smith   *newmat = B;
2469*f6d58c54SBarry Smith   PetscFunctionReturn(0);
2470*f6d58c54SBarry Smith }
2471*f6d58c54SBarry Smith 
2472*f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*);
2473*f6d58c54SBarry Smith 
24748c7482ecSBarry Smith 
247579bdfe76SSatish Balay /* -------------------------------------------------------------------*/
2476cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
2477cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
2478cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
2479cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
2480cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
248197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
24827c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
24837c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
2484cc2dc46cSBarry Smith        0,
2485cc2dc46cSBarry Smith        0,
2486cc2dc46cSBarry Smith        0,
248797304618SKris Buschelman /*10*/ 0,
2488cc2dc46cSBarry Smith        0,
2489cc2dc46cSBarry Smith        0,
2490cc2dc46cSBarry Smith        0,
2491cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
249297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
24937fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
2494cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
2495cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
2496cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
249797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
2498cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2499cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2500cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
2501d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ,
2502cc2dc46cSBarry Smith        0,
2503cc2dc46cSBarry Smith        0,
2504cc2dc46cSBarry Smith        0,
2505cc2dc46cSBarry Smith        0,
2506d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ,
2507273d9f13SBarry Smith        0,
2508cc2dc46cSBarry Smith        0,
2509cc2dc46cSBarry Smith        0,
2510cc2dc46cSBarry Smith        0,
2511d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ,
2512cc2dc46cSBarry Smith        0,
2513cc2dc46cSBarry Smith        0,
2514cc2dc46cSBarry Smith        0,
2515cc2dc46cSBarry Smith        0,
2516d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ,
2517cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2518cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2519cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
25203c896bc6SHong Zhang        MatCopy_MPIBAIJ,
2521d519adbfSMatthew Knepley /*44*/ 0,
2522cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2523cc2dc46cSBarry Smith        0,
2524cc2dc46cSBarry Smith        0,
2525cc2dc46cSBarry Smith        0,
2526d519adbfSMatthew Knepley /*49*/ 0,
2527cc2dc46cSBarry Smith        0,
2528cc2dc46cSBarry Smith        0,
2529cc2dc46cSBarry Smith        0,
2530cc2dc46cSBarry Smith        0,
2531*f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ,
2532cc2dc46cSBarry Smith        0,
2533cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
253482094794SBarry Smith        MatPermute_MPIBAIJ,
2535cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
2536d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ,
2537f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2538f14a1c24SBarry Smith        MatView_MPIBAIJ,
2539357abbc8SBarry Smith        0,
25407843d17aSBarry Smith        0,
2541d519adbfSMatthew Knepley /*64*/ 0,
25427843d17aSBarry Smith        0,
25437843d17aSBarry Smith        0,
25447843d17aSBarry Smith        0,
25457843d17aSBarry Smith        0,
2546d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ,
25477843d17aSBarry Smith        0,
254897304618SKris Buschelman        0,
254997304618SKris Buschelman        0,
255097304618SKris Buschelman        0,
2551d519adbfSMatthew Knepley /*74*/ 0,
2552*f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
255397304618SKris Buschelman        0,
255497304618SKris Buschelman        0,
255597304618SKris Buschelman        0,
2556d519adbfSMatthew Knepley /*79*/ 0,
255797304618SKris Buschelman        0,
255897304618SKris Buschelman        0,
255997304618SKris Buschelman        0,
2560865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2561d519adbfSMatthew Knepley /*84*/ 0,
2562865e5f61SKris Buschelman        0,
2563865e5f61SKris Buschelman        0,
2564865e5f61SKris Buschelman        0,
2565865e5f61SKris Buschelman        0,
2566d519adbfSMatthew Knepley /*89*/ 0,
2567865e5f61SKris Buschelman        0,
2568865e5f61SKris Buschelman        0,
2569865e5f61SKris Buschelman        0,
2570865e5f61SKris Buschelman        0,
2571d519adbfSMatthew Knepley /*94*/ 0,
2572865e5f61SKris Buschelman        0,
2573865e5f61SKris Buschelman        0,
257499cafbc1SBarry Smith        0,
257599cafbc1SBarry Smith        0,
2576d519adbfSMatthew Knepley /*99*/ 0,
257799cafbc1SBarry Smith        0,
257899cafbc1SBarry Smith        0,
257999cafbc1SBarry Smith        0,
258099cafbc1SBarry Smith        0,
2581d519adbfSMatthew Knepley /*104*/0,
258299cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
25838c7482ecSBarry Smith        MatImaginaryPart_MPIBAIJ,
25848c7482ecSBarry Smith        0,
25858c7482ecSBarry Smith        0,
2586d519adbfSMatthew Knepley /*109*/0,
25878c7482ecSBarry Smith        0,
25888c7482ecSBarry Smith        0,
25898c7482ecSBarry Smith        0,
25908c7482ecSBarry Smith        0,
2591*f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ,
25928c7482ecSBarry Smith        0,
25938c7482ecSBarry Smith        MatGetGhosts_MPIBAIJ
25948c7482ecSBarry Smith };
259579bdfe76SSatish Balay 
2596e18c124aSSatish Balay EXTERN_C_BEGIN
25974a2ae208SSatish Balay #undef __FUNCT__
25984a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2599be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
26005ef9f2a5SBarry Smith {
26015ef9f2a5SBarry Smith   PetscFunctionBegin;
26025ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
26035ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
26045ef9f2a5SBarry Smith   PetscFunctionReturn(0);
26055ef9f2a5SBarry Smith }
2606e18c124aSSatish Balay EXTERN_C_END
260779bdfe76SSatish Balay 
2608273d9f13SBarry Smith EXTERN_C_BEGIN
2609f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2610d94109b8SHong Zhang EXTERN_C_END
2611d94109b8SHong Zhang 
2612b8d659d7SLisandro Dalcin EXTERN_C_BEGIN
2613aac34f13SBarry Smith #undef __FUNCT__
2614aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2615cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2616aac34f13SBarry Smith {
2617b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2618b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2619b8d659d7SLisandro Dalcin   const PetscInt *JJ=0;
2620b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2621aac34f13SBarry Smith   PetscErrorCode ierr;
2622aac34f13SBarry Smith 
2623aac34f13SBarry Smith   PetscFunctionBegin;
2624b8d659d7SLisandro Dalcin 
2625b8d659d7SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
26267408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
26277408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2628d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2629d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2630d0f46423SBarry Smith   m      = B->rmap->n/bs;
2631d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2632d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2633d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2634b8d659d7SLisandro Dalcin 
2635cf12db73SBarry Smith   if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2636aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2637aac34f13SBarry Smith   o_nnz = d_nnz + m;
2638aac34f13SBarry Smith   for (i=0; i<m; i++) {
2639cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2640b8d659d7SLisandro Dalcin     if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2641b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2642cf12db73SBarry Smith     JJ  = jj + ii[i];
2643b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2644aac34f13SBarry Smith       if (*JJ >= cstart) break;
2645aac34f13SBarry Smith       JJ++;
2646aac34f13SBarry Smith     }
2647aac34f13SBarry Smith     d = 0;
2648b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2649aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2650aac34f13SBarry Smith       d++;
2651aac34f13SBarry Smith     }
2652aac34f13SBarry Smith     d_nnz[i] = d;
2653b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2654aac34f13SBarry Smith   }
2655aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2656aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2657aac34f13SBarry Smith 
2658b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2659b8d659d7SLisandro Dalcin   if (!values) {
2660b8d659d7SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2661b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2662b8d659d7SLisandro Dalcin   }
2663b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2664b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2665cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2666cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2667cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2668b8d659d7SLisandro Dalcin     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2669aac34f13SBarry Smith   }
2670aac34f13SBarry Smith 
2671b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2672aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2673aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2674aac34f13SBarry Smith 
2675aac34f13SBarry Smith   PetscFunctionReturn(0);
2676aac34f13SBarry Smith }
2677b8d659d7SLisandro Dalcin EXTERN_C_END
2678aac34f13SBarry Smith 
2679aac34f13SBarry Smith #undef __FUNCT__
2680aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2681aac34f13SBarry Smith /*@C
2682aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2683aac34f13SBarry Smith    (the default parallel PETSc format).
2684aac34f13SBarry Smith 
2685aac34f13SBarry Smith    Collective on MPI_Comm
2686aac34f13SBarry Smith 
2687aac34f13SBarry Smith    Input Parameters:
2688aac34f13SBarry Smith +  A - the matrix
2689aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2690aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2691aac34f13SBarry Smith -  v - optional values in the matrix
2692aac34f13SBarry Smith 
2693aac34f13SBarry Smith    Level: developer
2694aac34f13SBarry Smith 
2695aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2696aac34f13SBarry Smith 
2697aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2698aac34f13SBarry Smith @*/
2699be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2700aac34f13SBarry Smith {
2701aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2702aac34f13SBarry Smith 
2703aac34f13SBarry Smith   PetscFunctionBegin;
2704aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2705aac34f13SBarry Smith   if (f) {
2706aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2707aac34f13SBarry Smith   }
2708aac34f13SBarry Smith   PetscFunctionReturn(0);
2709aac34f13SBarry Smith }
2710aac34f13SBarry Smith 
2711d94109b8SHong Zhang EXTERN_C_BEGIN
27124a2ae208SSatish Balay #undef __FUNCT__
2713a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2714be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2715a23d5eceSKris Buschelman {
2716a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2717dfbe8321SBarry Smith   PetscErrorCode ierr;
2718db4efbfdSBarry Smith   PetscInt       i, newbs = PetscAbs(bs);
2719a23d5eceSKris Buschelman 
2720a23d5eceSKris Buschelman   PetscFunctionBegin;
2721db4efbfdSBarry Smith   if (bs < 0) {
27227adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2723db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
27248c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2725db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2726db4efbfdSBarry Smith   }
2727db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
2728db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
2729db4efbfdSBarry Smith   }
2730db4efbfdSBarry Smith   bs = newbs;
2731db4efbfdSBarry Smith 
2732a23d5eceSKris Buschelman 
2733a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2734a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2735a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
273677431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
273777431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2738899cda47SBarry Smith 
27397408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
27407408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2741d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2742d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2743899cda47SBarry Smith 
2744a23d5eceSKris Buschelman   if (d_nnz) {
2745d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
274677431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2747a23d5eceSKris Buschelman     }
2748a23d5eceSKris Buschelman   }
2749a23d5eceSKris Buschelman   if (o_nnz) {
2750d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
275177431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2752a23d5eceSKris Buschelman     }
2753a23d5eceSKris Buschelman   }
2754a23d5eceSKris Buschelman 
2755a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2756a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2757d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2758d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2759d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2760d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2761a23d5eceSKris Buschelman 
2762a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2763d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2764a23d5eceSKris Buschelman   }
2765d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2766d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2767d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2768d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2769a23d5eceSKris Buschelman 
2770526dfc15SBarry Smith   if (!B->preallocated) {
2771f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2772d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
27739c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
277452e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2775f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2776d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
27779c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
277852e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
27797adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2780526dfc15SBarry Smith   }
2781a23d5eceSKris Buschelman 
2782526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2783526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2784526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2785a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2786a23d5eceSKris Buschelman }
2787a23d5eceSKris Buschelman EXTERN_C_END
2788a23d5eceSKris Buschelman 
2789a23d5eceSKris Buschelman EXTERN_C_BEGIN
2790be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2791be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
279292b32695SKris Buschelman EXTERN_C_END
27935bf65638SKris Buschelman 
279482094794SBarry Smith 
279582094794SBarry Smith EXTERN_C_BEGIN
279682094794SBarry Smith #undef __FUNCT__
279782094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
279882094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj)
279982094794SBarry Smith {
280082094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
280182094794SBarry Smith   PetscErrorCode ierr;
280282094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
280382094794SBarry Smith   PetscInt       M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
280482094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
280582094794SBarry Smith 
280682094794SBarry Smith   PetscFunctionBegin;
280782094794SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr);
280882094794SBarry Smith   ii[0] = 0;
280982094794SBarry Smith   CHKMEMQ;
281082094794SBarry Smith   for (i=0; i<M; i++) {
281182094794SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
281282094794SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
281382094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
281482094794SBarry Smith     /* remove one from count of matrix has diagonal */
281582094794SBarry Smith     for (j=id[i]; j<id[i+1]; j++) {
281682094794SBarry Smith       if (jd[j] == i) {ii[i+1]--;break;}
281782094794SBarry Smith     }
281882094794SBarry Smith   CHKMEMQ;
281982094794SBarry Smith   }
282082094794SBarry Smith   ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr);
282182094794SBarry Smith   cnt = 0;
282282094794SBarry Smith   for (i=0; i<M; i++) {
282382094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
282482094794SBarry Smith       if (garray[jo[j]] > rstart) break;
282582094794SBarry Smith       jj[cnt++] = garray[jo[j]];
282682094794SBarry Smith   CHKMEMQ;
282782094794SBarry Smith     }
282882094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
282982094794SBarry Smith       if (jd[k] != i) {
283082094794SBarry Smith         jj[cnt++] = rstart + jd[k];
283182094794SBarry Smith   CHKMEMQ;
283282094794SBarry Smith       }
283382094794SBarry Smith     }
283482094794SBarry Smith     for (;j<io[i+1]; j++) {
283582094794SBarry Smith       jj[cnt++] = garray[jo[j]];
283682094794SBarry Smith   CHKMEMQ;
283782094794SBarry Smith     }
283882094794SBarry Smith   }
283982094794SBarry Smith   ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr);
284082094794SBarry Smith   PetscFunctionReturn(0);
284182094794SBarry Smith }
2842dbf0e21dSBarry Smith EXTERN_C_END
284382094794SBarry Smith 
28440bad9183SKris Buschelman /*MC
2845fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28460bad9183SKris Buschelman 
28470bad9183SKris Buschelman    Options Database Keys:
28488c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
28498c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28508c07d4e3SBarry Smith - -mat_use_hash_table <fact>
28510bad9183SKris Buschelman 
28520bad9183SKris Buschelman   Level: beginner
28530bad9183SKris Buschelman 
28540bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
28550bad9183SKris Buschelman M*/
28560bad9183SKris Buschelman 
285792b32695SKris Buschelman EXTERN_C_BEGIN
2858a23d5eceSKris Buschelman #undef __FUNCT__
28594a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2860be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2861273d9f13SBarry Smith {
2862273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2863dfbe8321SBarry Smith   PetscErrorCode ierr;
2864273d9f13SBarry Smith   PetscTruth     flg;
2865273d9f13SBarry Smith 
2866273d9f13SBarry Smith   PetscFunctionBegin;
286738f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
286882502324SSatish Balay   B->data = (void*)b;
286982502324SSatish Balay 
2870085a36d4SBarry Smith 
2871273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2872273d9f13SBarry Smith   B->mapping    = 0;
2873273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2874273d9f13SBarry Smith 
2875273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28767adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
28777adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2878273d9f13SBarry Smith 
2879273d9f13SBarry Smith   /* build local table of row and column ownerships */
2880899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2881273d9f13SBarry Smith 
2882273d9f13SBarry Smith   /* build cache for off array entries formed */
28837adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2884273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2885273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2886273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2887273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2888273d9f13SBarry Smith 
2889273d9f13SBarry Smith   /* stuff used in block assembly */
2890273d9f13SBarry Smith   b->barray       = 0;
2891273d9f13SBarry Smith 
2892273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2893273d9f13SBarry Smith   b->lvec         = 0;
2894273d9f13SBarry Smith   b->Mvctx        = 0;
2895273d9f13SBarry Smith 
2896273d9f13SBarry Smith   /* stuff for MatGetRow() */
2897273d9f13SBarry Smith   b->rowindices   = 0;
2898273d9f13SBarry Smith   b->rowvalues    = 0;
2899273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2900273d9f13SBarry Smith 
2901273d9f13SBarry Smith   /* hash table stuff */
2902273d9f13SBarry Smith   b->ht           = 0;
2903273d9f13SBarry Smith   b->hd           = 0;
2904273d9f13SBarry Smith   b->ht_size      = 0;
2905273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2906273d9f13SBarry Smith   b->ht_fact      = 0;
2907273d9f13SBarry Smith   b->ht_total_ct  = 0;
2908273d9f13SBarry Smith   b->ht_insert_ct = 0;
2909273d9f13SBarry Smith 
29107adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
29118c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2912273d9f13SBarry Smith     if (flg) {
2913f6275e2eSBarry Smith       PetscReal fact = 1.39;
29144e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
29158c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2916273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2917273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
29181e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2919273d9f13SBarry Smith     }
29208c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
29218c07d4e3SBarry Smith 
292282094794SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",
292382094794SBarry Smith                                      "MatConvert_MPIBAIJ_MPIAdj",
292482094794SBarry Smith                                       MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
2925273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2926273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2927273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2928273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2929273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2930273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2931273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2932273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2933273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2934a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2935a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2936a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2937aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
293844ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
2939aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
294092b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
294192b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
294292b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
29435bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
29445bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
29455bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
294617667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
2947273d9f13SBarry Smith   PetscFunctionReturn(0);
2948273d9f13SBarry Smith }
2949273d9f13SBarry Smith EXTERN_C_END
2950273d9f13SBarry Smith 
2951209238afSKris Buschelman /*MC
2952002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2953209238afSKris Buschelman 
2954209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2955209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2956209238afSKris Buschelman 
2957209238afSKris Buschelman    Options Database Keys:
2958209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2959209238afSKris Buschelman 
2960209238afSKris Buschelman   Level: beginner
2961209238afSKris Buschelman 
2962aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2963209238afSKris Buschelman M*/
2964209238afSKris Buschelman 
2965209238afSKris Buschelman EXTERN_C_BEGIN
2966209238afSKris Buschelman #undef __FUNCT__
2967209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2968be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2969dfbe8321SBarry Smith {
29706849ba73SBarry Smith   PetscErrorCode ierr;
2971b24ad042SBarry Smith   PetscMPIInt    size;
2972209238afSKris Buschelman 
2973209238afSKris Buschelman   PetscFunctionBegin;
29747adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2975209238afSKris Buschelman   if (size == 1) {
2976209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2977209238afSKris Buschelman   } else {
2978209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2979209238afSKris Buschelman   }
2980209238afSKris Buschelman   PetscFunctionReturn(0);
2981209238afSKris Buschelman }
2982209238afSKris Buschelman EXTERN_C_END
2983209238afSKris Buschelman 
29844a2ae208SSatish Balay #undef __FUNCT__
29854a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2986273d9f13SBarry Smith /*@C
2987aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2988273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2989273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2990273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2991273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2992273d9f13SBarry Smith 
2993273d9f13SBarry Smith    Collective on Mat
2994273d9f13SBarry Smith 
2995273d9f13SBarry Smith    Input Parameters:
2996273d9f13SBarry Smith +  A - the matrix
2997273d9f13SBarry Smith .  bs   - size of blockk
2998273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2999273d9f13SBarry Smith            submatrix  (same for all local rows)
3000273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3001273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
3002273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
3003273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3004273d9f13SBarry Smith            submatrix (same for all local rows).
3005273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3006273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
3007273d9f13SBarry Smith            each block row) or PETSC_NULL.
3008273d9f13SBarry Smith 
300949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3010273d9f13SBarry Smith 
3011273d9f13SBarry Smith    Options Database Keys:
30128c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30138c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3014273d9f13SBarry Smith 
3015273d9f13SBarry Smith    Notes:
3016273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3017273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith    Storage Information:
3020273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3021273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3022273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3023273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3024273d9f13SBarry Smith 
3025273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3026273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
3027273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
3028273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3029273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3030273d9f13SBarry Smith 
3031273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3032273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3033273d9f13SBarry Smith 
3034273d9f13SBarry Smith .vb
3035273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3036273d9f13SBarry Smith           -------------------
3037273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
3038273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
3039273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
3040273d9f13SBarry Smith           -------------------
3041273d9f13SBarry Smith .ve
3042273d9f13SBarry Smith 
3043273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3044273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3045273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3046273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3047273d9f13SBarry Smith 
3048273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3049273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3050273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3051273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3052273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3053273d9f13SBarry Smith    matrices.
3054273d9f13SBarry Smith 
3055aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3056aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3057aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3058aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3059aa95bbe8SBarry Smith 
3060273d9f13SBarry Smith    Level: intermediate
3061273d9f13SBarry Smith 
3062273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3063273d9f13SBarry Smith 
3064aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
3065273d9f13SBarry Smith @*/
3066be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3067273d9f13SBarry Smith {
3068b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
3069273d9f13SBarry Smith 
3070273d9f13SBarry Smith   PetscFunctionBegin;
3071a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3072a23d5eceSKris Buschelman   if (f) {
3073a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3074273d9f13SBarry Smith   }
3075273d9f13SBarry Smith   PetscFunctionReturn(0);
3076273d9f13SBarry Smith }
3077273d9f13SBarry Smith 
30784a2ae208SSatish Balay #undef __FUNCT__
30794a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
308079bdfe76SSatish Balay /*@C
308179bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
308279bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
308379bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
308479bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
308579bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
308679bdfe76SSatish Balay 
3087db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3088db81eaa0SLois Curfman McInnes 
308979bdfe76SSatish Balay    Input Parameters:
3090db81eaa0SLois Curfman McInnes +  comm - MPI communicator
309179bdfe76SSatish Balay .  bs   - size of blockk
309279bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
309392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
309492e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
309592e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
309692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
309792e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3098be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3099be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
310047a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
310179bdfe76SSatish Balay            submatrix  (same for all local rows)
310247a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
310392e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
3104db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
310547a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
310679bdfe76SSatish Balay            submatrix (same for all local rows).
310747a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
310892e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
310992e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
311079bdfe76SSatish Balay 
311179bdfe76SSatish Balay    Output Parameter:
311279bdfe76SSatish Balay .  A - the matrix
311379bdfe76SSatish Balay 
3114db81eaa0SLois Curfman McInnes    Options Database Keys:
31158c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31168c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
31173ffaccefSLois Curfman McInnes 
3118175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3119ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3120175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3121175b88e8SBarry Smith 
3122b259b22eSLois Curfman McInnes    Notes:
312349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
312449a6f317SBarry Smith 
312547a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
312647a75d0bSBarry Smith 
312779bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
312879bdfe76SSatish Balay    (possibly both).
312979bdfe76SSatish Balay 
3130be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3131be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3132be79a94dSBarry Smith 
313379bdfe76SSatish Balay    Storage Information:
313479bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
313579bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
313679bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
313779bdfe76SSatish Balay    local matrix (a rectangular submatrix).
313879bdfe76SSatish Balay 
313979bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
314079bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
314179bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
314279bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
314379bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
314479bdfe76SSatish Balay 
314579bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
314679bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
314779bdfe76SSatish Balay 
3148db81eaa0SLois Curfman McInnes .vb
3149db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3150db81eaa0SLois Curfman McInnes           -------------------
3151db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
3152db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
3153db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
3154db81eaa0SLois Curfman McInnes           -------------------
3155db81eaa0SLois Curfman McInnes .ve
315679bdfe76SSatish Balay 
315779bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
315879bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
315979bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
316057b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
316179bdfe76SSatish Balay 
3162d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3163d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
316479bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
316592e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
316692e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31676da5968aSLois Curfman McInnes    matrices.
316879bdfe76SSatish Balay 
3169027ccd11SLois Curfman McInnes    Level: intermediate
3170027ccd11SLois Curfman McInnes 
317192e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
317279bdfe76SSatish Balay 
3173aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
317479bdfe76SSatish Balay @*/
3175be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
317679bdfe76SSatish Balay {
31776849ba73SBarry Smith   PetscErrorCode ierr;
3178b24ad042SBarry Smith   PetscMPIInt    size;
317979bdfe76SSatish Balay 
3180d64ed03dSBarry Smith   PetscFunctionBegin;
3181f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3182f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3183d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3184273d9f13SBarry Smith   if (size > 1) {
3185273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3186273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3187273d9f13SBarry Smith   } else {
3188273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3189273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
31903914022bSBarry Smith   }
31913a40ed3dSBarry Smith   PetscFunctionReturn(0);
319279bdfe76SSatish Balay }
3193026e39d0SSatish Balay 
31944a2ae208SSatish Balay #undef __FUNCT__
31954a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
31966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
31970ac07820SSatish Balay {
31980ac07820SSatish Balay   Mat            mat;
31990ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3200dfbe8321SBarry Smith   PetscErrorCode ierr;
3201b24ad042SBarry Smith   PetscInt       len=0;
32020ac07820SSatish Balay 
3203d64ed03dSBarry Smith   PetscFunctionBegin;
32040ac07820SSatish Balay   *newmat       = 0;
32057adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
3206d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
32077adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
32081d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
32097fff6886SHong Zhang 
32104beb1cfeSHong Zhang   mat->factor       = matin->factor;
3211273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32120ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32137fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32147fff6886SHong Zhang 
3215273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
3216d0f46423SBarry Smith   mat->rmap->bs  = matin->rmap->bs;
32170ac07820SSatish Balay   a->bs2   = oldmat->bs2;
32180ac07820SSatish Balay   a->mbs   = oldmat->mbs;
32190ac07820SSatish Balay   a->nbs   = oldmat->nbs;
32200ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
32210ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
32220ac07820SSatish Balay 
3223d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr);
3224d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr);
3225899cda47SBarry Smith 
32260ac07820SSatish Balay   a->size         = oldmat->size;
32270ac07820SSatish Balay   a->rank         = oldmat->rank;
3228aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3229aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3230aef5e8e0SSatish Balay   a->rowindices   = 0;
32310ac07820SSatish Balay   a->rowvalues    = 0;
32320ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
323330793edcSSatish Balay   a->barray       = 0;
3234899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3235899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3236899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3237899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32380ac07820SSatish Balay 
3239133cdb44SSatish Balay   /* hash table stuff */
3240133cdb44SSatish Balay   a->ht           = 0;
3241133cdb44SSatish Balay   a->hd           = 0;
3242133cdb44SSatish Balay   a->ht_size      = 0;
3243133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
324425fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3245133cdb44SSatish Balay   a->ht_total_ct  = 0;
3246133cdb44SSatish Balay   a->ht_insert_ct = 0;
3247133cdb44SSatish Balay 
3248899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
32497adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
3250d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
32510ac07820SSatish Balay   if (oldmat->colmap) {
3252aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
32530f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
325448e59246SSatish Balay #else
3255b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
325652e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3257b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
325848e59246SSatish Balay #endif
32590ac07820SSatish Balay   } else a->colmap = 0;
32604beb1cfeSHong Zhang 
32610ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3262b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
326352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3264b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
32650ac07820SSatish Balay   } else a->garray = 0;
32660ac07820SSatish Balay 
32670ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
326852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
32690ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
327052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
32717fff6886SHong Zhang 
32722e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
327352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
32742e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
327552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
32767adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
32770ac07820SSatish Balay   *newmat = mat;
32784beb1cfeSHong Zhang 
32793a40ed3dSBarry Smith   PetscFunctionReturn(0);
32800ac07820SSatish Balay }
328157b952d6SSatish Balay 
3282e090d566SSatish Balay #include "petscsys.h"
328357b952d6SSatish Balay 
32844a2ae208SSatish Balay #undef __FUNCT__
32854a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
3286a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
328757b952d6SSatish Balay {
328857b952d6SSatish Balay   Mat            A;
32896849ba73SBarry Smith   PetscErrorCode ierr;
3290b24ad042SBarry Smith   int            fd;
3291b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
329287828ca2SBarry Smith   PetscScalar    *vals,*buf;
329357b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
329457b952d6SSatish Balay   MPI_Status     status;
3295b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
3296b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
3297910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
3298167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
3299dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
3300910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
3301dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
330257b952d6SSatish Balay 
3303d64ed03dSBarry Smith   PetscFunctionBegin;
330477925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
33058c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
33068c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
330757b952d6SSatish Balay 
3308d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3309d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
331057b952d6SSatish Balay   if (!rank) {
3311b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
3312e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
3313552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
33146c5fab8fSBarry Smith   }
3315d64ed03dSBarry Smith 
3316b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
331757b952d6SSatish Balay   M = header[1]; N = header[2];
331857b952d6SSatish Balay 
331929bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
332057b952d6SSatish Balay 
332157b952d6SSatish Balay   /*
332257b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
332357b952d6SSatish Balay      divisible by the blocksize
332457b952d6SSatish Balay   */
332557b952d6SSatish Balay   Mbs        = M/bs;
3326dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
332757b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
332857b952d6SSatish Balay   else                  Mbs++;
332957b952d6SSatish Balay   if (extra_rows && !rank) {
33301e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
333157b952d6SSatish Balay   }
3332537820f0SBarry Smith 
333357b952d6SSatish Balay   /* determine ownership of all rows */
333457b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
333557b952d6SSatish Balay   m          = mbs*bs;
3336dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
3337b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
3338167e7480SBarry Smith 
3339167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
3340167e7480SBarry Smith   if (!rank) {
3341167e7480SBarry Smith     mmax = rowners[1];
3342167e7480SBarry Smith     for (i=2; i<size; i++) {
3343167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
3344167e7480SBarry Smith     }
3345ca02efcfSSatish Balay     mmax*=bs;
3346167e7480SBarry Smith   } else mmax = m;
3347167e7480SBarry Smith 
334857b952d6SSatish Balay   rowners[0] = 0;
3349cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
3350cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
335157b952d6SSatish Balay   rstart = rowners[rank];
335257b952d6SSatish Balay   rend   = rowners[rank+1];
335357b952d6SSatish Balay 
335457b952d6SSatish Balay   /* distribute row lengths to all processors */
335519c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
335657b952d6SSatish Balay   if (!rank) {
3357dc231df0SBarry Smith     mend = m;
3358dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
3359dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
3360dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
3361dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
3362b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
3363b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
3364dc231df0SBarry Smith     for (j=0; j<m; j++) {
3365dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
3366dc231df0SBarry Smith     }
3367dc231df0SBarry Smith     for (i=1; i<size; i++) {
3368dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
3369dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
3370dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
3371dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
3372dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
3373dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
337457b952d6SSatish Balay         procsnz[i] += rowlengths[j];
337557b952d6SSatish Balay       }
3376dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
337757b952d6SSatish Balay     }
3378606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3379dc231df0SBarry Smith   } else {
3380dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3381dc231df0SBarry Smith   }
338257b952d6SSatish Balay 
3383dc231df0SBarry Smith   if (!rank) {
338457b952d6SSatish Balay     /* determine max buffer needed and allocate it */
33858a8e0b3aSBarry Smith     maxnz = procsnz[0];
3386cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
338757b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
338857b952d6SSatish Balay     }
3389b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
339057b952d6SSatish Balay 
339157b952d6SSatish Balay     /* read in my part of the matrix column indices  */
339257b952d6SSatish Balay     nz     = procsnz[0];
339319c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
339457b952d6SSatish Balay     mycols = ibuf;
3395cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3396e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
3397cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
3398cee3aa6bSSatish Balay 
339957b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
340057b952d6SSatish Balay     for (i=1; i<size-1; i++) {
340157b952d6SSatish Balay       nz   = procsnz[i];
3402e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
3403b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
340457b952d6SSatish Balay     }
340557b952d6SSatish Balay     /* read in the stuff for the last proc */
340657b952d6SSatish Balay     if (size != 1) {
340757b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
3408e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
340957b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
3410b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
341157b952d6SSatish Balay     }
3412606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
3413d64ed03dSBarry Smith   } else {
341457b952d6SSatish Balay     /* determine buffer space needed for message */
341557b952d6SSatish Balay     nz = 0;
341657b952d6SSatish Balay     for (i=0; i<m; i++) {
341757b952d6SSatish Balay       nz += locrowlens[i];
341857b952d6SSatish Balay     }
341919c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
342057b952d6SSatish Balay     mycols = ibuf;
342157b952d6SSatish Balay     /* receive message of column indices*/
3422b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3423b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
342429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
342557b952d6SSatish Balay   }
342657b952d6SSatish Balay 
342757b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
3428dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
3429dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
3430dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3431dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3432dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
343357b952d6SSatish Balay   rowcount = 0; nzcount = 0;
343457b952d6SSatish Balay   for (i=0; i<mbs; i++) {
343557b952d6SSatish Balay     dcount  = 0;
343657b952d6SSatish Balay     odcount = 0;
343757b952d6SSatish Balay     for (j=0; j<bs; j++) {
343857b952d6SSatish Balay       kmax = locrowlens[rowcount];
343957b952d6SSatish Balay       for (k=0; k<kmax; k++) {
344057b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
344157b952d6SSatish Balay         if (!mask[tmp]) {
344257b952d6SSatish Balay           mask[tmp] = 1;
344357b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
344457b952d6SSatish Balay           else masked1[dcount++] = tmp;
344557b952d6SSatish Balay         }
344657b952d6SSatish Balay       }
344757b952d6SSatish Balay       rowcount++;
344857b952d6SSatish Balay     }
3449cee3aa6bSSatish Balay 
345057b952d6SSatish Balay     dlens[i]  = dcount;
345157b952d6SSatish Balay     odlens[i] = odcount;
3452cee3aa6bSSatish Balay 
345357b952d6SSatish Balay     /* zero out the mask elements we set */
345457b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
345557b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
345657b952d6SSatish Balay   }
3457cee3aa6bSSatish Balay 
345857b952d6SSatish Balay   /* create our matrix */
3459f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
3460f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
346178ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
346278ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
346378ae41b4SKris Buschelman 
346457b952d6SSatish Balay   if (!rank) {
346519c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
346657b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
346757b952d6SSatish Balay     nz = procsnz[0];
346857b952d6SSatish Balay     vals = buf;
3469cee3aa6bSSatish Balay     mycols = ibuf;
3470cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3471e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3472cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
3473537820f0SBarry Smith 
347457b952d6SSatish Balay     /* insert into matrix */
347557b952d6SSatish Balay     jj      = rstart*bs;
347657b952d6SSatish Balay     for (i=0; i<m; i++) {
3477dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
347857b952d6SSatish Balay       mycols += locrowlens[i];
347957b952d6SSatish Balay       vals   += locrowlens[i];
348057b952d6SSatish Balay       jj++;
348157b952d6SSatish Balay     }
348257b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
348357b952d6SSatish Balay     for (i=1; i<size-1; i++) {
348457b952d6SSatish Balay       nz   = procsnz[i];
348557b952d6SSatish Balay       vals = buf;
3486e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
34877adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
348857b952d6SSatish Balay     }
348957b952d6SSatish Balay     /* the last proc */
349057b952d6SSatish Balay     if (size != 1){
349157b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
3492cee3aa6bSSatish Balay       vals = buf;
3493e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
349457b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
34957adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
349657b952d6SSatish Balay     }
3497606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
3498d64ed03dSBarry Smith   } else {
349957b952d6SSatish Balay     /* receive numeric values */
350019c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
350157b952d6SSatish Balay 
350257b952d6SSatish Balay     /* receive message of values*/
350357b952d6SSatish Balay     vals   = buf;
3504cee3aa6bSSatish Balay     mycols = ibuf;
35057adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
3506ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
350729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
350857b952d6SSatish Balay 
350957b952d6SSatish Balay     /* insert into matrix */
351057b952d6SSatish Balay     jj      = rstart*bs;
3511cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
3512dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
351357b952d6SSatish Balay       mycols += locrowlens[i];
351457b952d6SSatish Balay       vals   += locrowlens[i];
351557b952d6SSatish Balay       jj++;
351657b952d6SSatish Balay     }
351757b952d6SSatish Balay   }
3518606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
3519606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
3520606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
3521dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
3522dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
3523dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
35246d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
35256d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
352678ae41b4SKris Buschelman 
352778ae41b4SKris Buschelman   *newmat = A;
35283a40ed3dSBarry Smith   PetscFunctionReturn(0);
352957b952d6SSatish Balay }
353057b952d6SSatish Balay 
35314a2ae208SSatish Balay #undef __FUNCT__
35324a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3533133cdb44SSatish Balay /*@
3534133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3535133cdb44SSatish Balay 
3536133cdb44SSatish Balay    Input Parameters:
3537133cdb44SSatish Balay .  mat  - the matrix
3538133cdb44SSatish Balay .  fact - factor
3539133cdb44SSatish Balay 
3540fee21e36SBarry Smith    Collective on Mat
3541fee21e36SBarry Smith 
35428c890885SBarry Smith    Level: advanced
35438c890885SBarry Smith 
3544133cdb44SSatish Balay   Notes:
35458c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3546133cdb44SSatish Balay 
3547133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3548133cdb44SSatish Balay 
3549133cdb44SSatish Balay .seealso: MatSetOption()
3550133cdb44SSatish Balay @*/
3551be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3552133cdb44SSatish Balay {
3553dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
35545bf65638SKris Buschelman 
35555bf65638SKris Buschelman   PetscFunctionBegin;
35565bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
35575bf65638SKris Buschelman   if (f) {
35585bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
35595bf65638SKris Buschelman   }
35605bf65638SKris Buschelman   PetscFunctionReturn(0);
35615bf65638SKris Buschelman }
35625bf65638SKris Buschelman 
3563be1d678aSKris Buschelman EXTERN_C_BEGIN
35645bf65638SKris Buschelman #undef __FUNCT__
35655bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
3566be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
35675bf65638SKris Buschelman {
356825fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3569133cdb44SSatish Balay 
3570133cdb44SSatish Balay   PetscFunctionBegin;
3571133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
3572133cdb44SSatish Balay   baij->ht_fact = fact;
3573133cdb44SSatish Balay   PetscFunctionReturn(0);
3574133cdb44SSatish Balay }
3575be1d678aSKris Buschelman EXTERN_C_END
3576f2a5309cSSatish Balay 
35774a2ae208SSatish Balay #undef __FUNCT__
35784a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
3579be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
3580f2a5309cSSatish Balay {
3581f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3582f2a5309cSSatish Balay   PetscFunctionBegin;
3583f2a5309cSSatish Balay   *Ad     = a->A;
3584f2a5309cSSatish Balay   *Ao     = a->B;
3585195d93cdSBarry Smith   *colmap = a->garray;
3586f2a5309cSSatish Balay   PetscFunctionReturn(0);
3587f2a5309cSSatish Balay }
358885535b8eSBarry Smith 
358985535b8eSBarry Smith /*
359085535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
359185535b8eSBarry Smith */
359285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
359385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
359485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
359585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
359685535b8eSBarry Smith #endif
359785535b8eSBarry Smith 
359885535b8eSBarry Smith #undef __FUNCT__
359985535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
360085535b8eSBarry Smith /*@C
360185535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
360285535b8eSBarry Smith 
360385535b8eSBarry Smith   Collective on Mat
360485535b8eSBarry Smith 
360585535b8eSBarry Smith   Input Parameters:
360685535b8eSBarry Smith + mat - the matrix
360785535b8eSBarry Smith . min - number of input rows
360885535b8eSBarry Smith . im - input rows
360985535b8eSBarry Smith . nin - number of input columns
361085535b8eSBarry Smith . in - input columns
361185535b8eSBarry Smith . v - numerical values input
361285535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
361385535b8eSBarry Smith 
361485535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
361585535b8eSBarry Smith 
361685535b8eSBarry Smith   Level: advanced
361785535b8eSBarry Smith 
361885535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
361985535b8eSBarry Smith @*/
362085535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
362185535b8eSBarry Smith {
362285535b8eSBarry Smith   /* convert input arguments to C version */
362385535b8eSBarry Smith   Mat             mat = *matin;
362485535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
362585535b8eSBarry Smith   InsertMode      addv = *addvin;
362685535b8eSBarry Smith 
362785535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
362885535b8eSBarry Smith   const MatScalar *value;
362985535b8eSBarry Smith   MatScalar       *barray=baij->barray;
363085535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
363185535b8eSBarry Smith   PetscErrorCode  ierr;
363285535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
363385535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3634d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
363585535b8eSBarry Smith 
363685535b8eSBarry Smith   PetscFunctionBegin;
363785535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
363885535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
363985535b8eSBarry Smith     mat->insertmode = addv;
364085535b8eSBarry Smith   }
364185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
364285535b8eSBarry Smith   else if (mat->insertmode != addv) {
364385535b8eSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
364485535b8eSBarry Smith   }
364585535b8eSBarry Smith   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
364685535b8eSBarry Smith #endif
364785535b8eSBarry Smith   if (mat->assembled) {
364885535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
364985535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
365085535b8eSBarry Smith   }
365185535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
365285535b8eSBarry Smith 
365385535b8eSBarry Smith 
365485535b8eSBarry Smith   if(!barray) {
365585535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
365685535b8eSBarry Smith     baij->barray = barray;
365785535b8eSBarry Smith   }
365885535b8eSBarry Smith 
365985535b8eSBarry Smith   if (roworiented) {
366085535b8eSBarry Smith     stepval = (n-1)*bs;
366185535b8eSBarry Smith   } else {
366285535b8eSBarry Smith     stepval = (m-1)*bs;
366385535b8eSBarry Smith   }
366485535b8eSBarry Smith   for (i=0; i<m; i++) {
366585535b8eSBarry Smith     if (im[i] < 0) continue;
366685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
366785535b8eSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
366885535b8eSBarry Smith #endif
366985535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
367085535b8eSBarry Smith       row = im[i] - rstart;
367185535b8eSBarry Smith       for (j=0; j<n; j++) {
367285535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
367385535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
367485535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
367585535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
367685535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
367785535b8eSBarry Smith         } else { /* Here a copy is required */
367885535b8eSBarry Smith           if (roworiented) {
367985535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
368085535b8eSBarry Smith           } else {
368185535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
368285535b8eSBarry Smith           }
368385535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
368485535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
368585535b8eSBarry Smith               *barray++  = *value++;
368685535b8eSBarry Smith             }
368785535b8eSBarry Smith           }
368885535b8eSBarry Smith           barray -=bs2;
368985535b8eSBarry Smith         }
369085535b8eSBarry Smith 
369185535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
369285535b8eSBarry Smith           col  = in[j] - cstart;
369397e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
369485535b8eSBarry Smith         }
369585535b8eSBarry Smith         else if (in[j] < 0) continue;
369685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
369785535b8eSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
369885535b8eSBarry Smith #endif
369985535b8eSBarry Smith         else {
370085535b8eSBarry Smith           if (mat->was_assembled) {
370185535b8eSBarry Smith             if (!baij->colmap) {
370285535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
370385535b8eSBarry Smith             }
370485535b8eSBarry Smith 
370585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
370685535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
370785535b8eSBarry Smith             { PetscInt data;
370885535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
370985535b8eSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
371085535b8eSBarry Smith             }
371185535b8eSBarry Smith #else
371285535b8eSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
371385535b8eSBarry Smith #endif
371485535b8eSBarry Smith #endif
371585535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
371685535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
371785535b8eSBarry Smith             col  = (col - 1)/bs;
371885535b8eSBarry Smith #else
371985535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
372085535b8eSBarry Smith #endif
372185535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
372285535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
372385535b8eSBarry Smith               col =  in[j];
372485535b8eSBarry Smith             }
372585535b8eSBarry Smith           }
372685535b8eSBarry Smith           else col = in[j];
372797e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
372885535b8eSBarry Smith         }
372985535b8eSBarry Smith       }
373085535b8eSBarry Smith     } else {
373185535b8eSBarry Smith       if (!baij->donotstash) {
373285535b8eSBarry Smith         if (roworiented) {
373385535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
373485535b8eSBarry Smith         } else {
373585535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
373685535b8eSBarry Smith         }
373785535b8eSBarry Smith       }
373885535b8eSBarry Smith     }
373985535b8eSBarry Smith   }
374085535b8eSBarry Smith 
374185535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
374285535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
374385535b8eSBarry Smith   PetscFunctionReturn(0);
374485535b8eSBarry Smith }
3745