1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 26290f02eecSBarry Smith if (!baij->donotstash) { 263ff2fd236SBarry Smith if (roworiented) { 264b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 265ff2fd236SBarry Smith } else { 266b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27090f02eecSBarry Smith } 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 27257b952d6SSatish Balay } 27357b952d6SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 277ab26458aSBarry Smith { 278ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 279dd6ea824SBarry Smith const PetscScalar *value; 280f15d580aSBarry Smith MatScalar *barray=baij->barray; 281273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 282dfbe8321SBarry Smith PetscErrorCode ierr; 283899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 284899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 285d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 286ab26458aSBarry Smith 287b16ae2b1SBarry Smith PetscFunctionBegin; 28830793edcSSatish Balay if(!barray) { 28982502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29082502324SSatish Balay baij->barray = barray; 29130793edcSSatish Balay } 29230793edcSSatish Balay 293ab26458aSBarry Smith if (roworiented) { 294ab26458aSBarry Smith stepval = (n-1)*bs; 295ab26458aSBarry Smith } else { 296ab26458aSBarry Smith stepval = (m-1)*bs; 297ab26458aSBarry Smith } 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 313ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 314ab26458aSBarry Smith } else { 315ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 316abef11f7SSatish Balay } 31747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31847513183SBarry Smith for (jj=0; jj<bs; jj++) { 31930793edcSSatish Balay *barray++ = *value++; 32047513183SBarry Smith } 32147513183SBarry Smith } 32230793edcSSatish Balay barray -=bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 328ab26458aSBarry Smith } 3295ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 332ab26458aSBarry Smith #endif 333ab26458aSBarry Smith else { 334ab26458aSBarry Smith if (mat->was_assembled) { 335ab26458aSBarry Smith if (!baij->colmap) { 336ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 337ab26458aSBarry Smith } 338a5eb4965SSatish Balay 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 341b24ad042SBarry Smith { PetscInt data; 3420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34329bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 344fa46199cSSatish Balay } 34548e59246SSatish Balay #else 34629bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 347a5eb4965SSatish Balay #endif 34848e59246SSatish Balay #endif 349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3500f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 351fa46199cSSatish Balay col = (col - 1)/bs; 35248e59246SSatish Balay #else 353a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35448e59246SSatish Balay #endif 355ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 356ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357ab26458aSBarry Smith col = in[j]; 358ab26458aSBarry Smith } 359ab26458aSBarry Smith } 360ab26458aSBarry Smith else col = in[j]; 36197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 364d64ed03dSBarry Smith } else { 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 42477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 43477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 446b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 448b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48777431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 50977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 51977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 58897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 59397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 6567adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 657064f8208SBarry Smith *nrm = sqrt(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 662d0f46423SBarry Smith tmp2 = tmp + mat->cmap->N; 663d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6648a62d963SHong Zhang v = amat->a; jj = amat->j; 6658a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6668a62d963SHong Zhang for (j=0; j<bs; j++){ 6678a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6688a62d963SHong Zhang for (row=0; row<bs; row++){ 6698a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6708a62d963SHong Zhang } 6718a62d963SHong Zhang } 6728a62d963SHong Zhang jj++; 6738a62d963SHong Zhang } 6748a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6758a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6768a62d963SHong Zhang for (j=0; j<bs; j++){ 6778a62d963SHong Zhang col = bs*garray[*jj] + j; 6788a62d963SHong Zhang for (row=0; row<bs; row++){ 6798a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6808a62d963SHong Zhang } 6818a62d963SHong Zhang } 6828a62d963SHong Zhang jj++; 6838a62d963SHong Zhang } 684d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6858a62d963SHong Zhang *nrm = 0.0; 686d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6878a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6888a62d963SHong Zhang } 6898a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6908a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 691577dd1f9SKris Buschelman PetscReal *sums; 692577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6938a62d963SHong Zhang sum = 0.0; 6948a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6958a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6968a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6978a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6988a62d963SHong Zhang for (i=0; i<nz; i++) { 6998a62d963SHong Zhang for (col=0; col<bs; col++){ 7008a62d963SHong Zhang for (row=0; row<bs; row++){ 7018a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7068a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7078a62d963SHong Zhang for (i=0; i<nz; i++) { 7088a62d963SHong Zhang for (col=0; col<bs; col++){ 7098a62d963SHong Zhang for (row=0; row<bs; row++){ 7108a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang for (row=0; row<bs; row++){ 7158a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7187adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 719577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 720d64ed03dSBarry Smith } else { 72129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 722d6de1c52SSatish Balay } 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7540bdbc534SSatish Balay size = baij->ht_size; 755fef45726SSatish Balay 7560bdbc534SSatish Balay if (baij->ht) { 7570bdbc534SSatish Balay PetscFunctionReturn(0); 758596b8d2eSBarry Smith } 7590bdbc534SSatish Balay 760fef45726SSatish Balay /* Allocate Memory for Hash Table */ 761b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 762b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 763b9e4cc15SSatish Balay HD = baij->hd; 764a07cd24cSSatish Balay HT = baij->ht; 765b9e4cc15SSatish Balay 766b9e4cc15SSatish Balay 767b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7680bdbc534SSatish Balay 769596b8d2eSBarry Smith 770596b8d2eSBarry Smith /* Loop Over A */ 7710bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 772596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7730bdbc534SSatish Balay row = i+rstart; 7740bdbc534SSatish Balay col = aj[j]+cstart; 775596b8d2eSBarry Smith 776187ce0cbSSatish Balay key = row*Nbs + col + 1; 777c2760754SSatish Balay h1 = HASH(size,key,tmp); 7780bdbc534SSatish Balay for (k=0; k<size; k++){ 779958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7800bdbc534SSatish Balay HT[(h1+k)%size] = key; 7810bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 782596b8d2eSBarry Smith break; 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay } else { 785187ce0cbSSatish Balay ct++; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788187ce0cbSSatish Balay } 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay if (k> max) max = k; 791187ce0cbSSatish Balay #endif 792596b8d2eSBarry Smith } 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith /* Loop Over B */ 7950bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 796596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7970bdbc534SSatish Balay row = i+rstart; 7980bdbc534SSatish Balay col = garray[bj[j]]; 799187ce0cbSSatish Balay key = row*Nbs + col + 1; 800c2760754SSatish Balay h1 = HASH(size,key,tmp); 8010bdbc534SSatish Balay for (k=0; k<size; k++){ 802958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8030bdbc534SSatish Balay HT[(h1+k)%size] = key; 8040bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 805596b8d2eSBarry Smith break; 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807187ce0cbSSatish Balay } else { 808187ce0cbSSatish Balay ct++; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811187ce0cbSSatish Balay } 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay if (k> max) max = k; 814187ce0cbSSatish Balay #endif 815596b8d2eSBarry Smith } 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith 818596b8d2eSBarry Smith /* Print Summary */ 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 821596b8d2eSBarry Smith if (HT[i]) {j++;} 822c38d4ed2SBarry Smith } 8231e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 824187ce0cbSSatish Balay #endif 8253a40ed3dSBarry Smith PetscFunctionReturn(0); 826596b8d2eSBarry Smith } 82757b952d6SSatish Balay 8284a2ae208SSatish Balay #undef __FUNCT__ 8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 831bbb85fb3SSatish Balay { 832bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834b24ad042SBarry Smith PetscInt nstash,reallocs; 835bbb85fb3SSatish Balay InsertMode addv; 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay PetscFunctionBegin; 838bbb85fb3SSatish Balay if (baij->donotstash) { 839bbb85fb3SSatish Balay PetscFunctionReturn(0); 840bbb85fb3SSatish Balay } 841bbb85fb3SSatish Balay 842bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8437adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 844bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 848bbb85fb3SSatish Balay 849d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8541e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 855bbb85fb3SSatish Balay PetscFunctionReturn(0); 856bbb85fb3SSatish Balay } 857bbb85fb3SSatish Balay 8584a2ae208SSatish Balay #undef __FUNCT__ 8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 861bbb85fb3SSatish Balay { 862bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8646849ba73SBarry Smith PetscErrorCode ierr; 865b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 866e44c0bd4SBarry Smith PetscInt *row,*col; 867e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8683eda8832SBarry Smith MatScalar *val; 869bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 870b24ad042SBarry Smith PetscMPIInt n; 871bbb85fb3SSatish Balay 87291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 873bbb85fb3SSatish Balay PetscFunctionBegin; 874bbb85fb3SSatish Balay if (!baij->donotstash) { 875a2d1c673SSatish Balay while (1) { 8768798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 877a2d1c673SSatish Balay if (!flg) break; 878a2d1c673SSatish Balay 879bbb85fb3SSatish Balay for (i=0; i<n;) { 880bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 881bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 882bbb85fb3SSatish Balay if (j < n) ncols = j-i; 883bbb85fb3SSatish Balay else ncols = n-i; 884bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 886bbb85fb3SSatish Balay i = j; 887bbb85fb3SSatish Balay } 888bbb85fb3SSatish Balay } 8898798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 890a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 891a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 892a2d1c673SSatish Balay restore the original flags */ 893a2d1c673SSatish Balay r1 = baij->roworiented; 894a2d1c673SSatish Balay r2 = a->roworiented; 89591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8967c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8977c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 899a2d1c673SSatish Balay while (1) { 9008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 901a2d1c673SSatish Balay if (!flg) break; 902a2d1c673SSatish Balay 903a2d1c673SSatish Balay for (i=0; i<n;) { 904a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 905a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 906a2d1c673SSatish Balay if (j < n) ncols = j-i; 907a2d1c673SSatish Balay else ncols = n-i; 90897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 909a2d1c673SSatish Balay i = j; 910a2d1c673SSatish Balay } 911a2d1c673SSatish Balay } 9128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 913a2d1c673SSatish Balay baij->roworiented = r1; 914a2d1c673SSatish Balay a->roworiented = r2; 91591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 916bbb85fb3SSatish Balay } 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 919bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 922bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 923bbb85fb3SSatish Balay /* 924bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 925bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 926bbb85fb3SSatish Balay */ 927bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9287adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 929bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 930bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 931bbb85fb3SSatish Balay } 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay 934bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 935bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 936bbb85fb3SSatish Balay } 93791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 938bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 939bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay 9416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 942bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9431e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 944bbb85fb3SSatish Balay baij->ht_total_ct = 0; 945bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 946bbb85fb3SSatish Balay } 947bbb85fb3SSatish Balay #endif 948bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 949bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 950bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 951bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 955606d414cSSatish Balay baij->rowvalues = 0; 956bbb85fb3SSatish Balay PetscFunctionReturn(0); 957bbb85fb3SSatish Balay } 95857b952d6SSatish Balay 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96257b952d6SSatish Balay { 96357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 964dfbe8321SBarry Smith PetscErrorCode ierr; 965b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 966d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96732077d6dSBarry Smith PetscTruth iascii,isdraw; 968b0a32e0cSBarry Smith PetscViewer sviewer; 969f3ef73ceSBarry Smith PetscViewerFormat format; 97057b952d6SSatish Balay 971d64ed03dSBarry Smith PetscFunctionBegin; 97232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 973fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97432077d6dSBarry Smith if (iascii) { 975b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 976456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9774e220ebcSLois Curfman McInnes MatInfo info; 9787adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 979d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 981d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 982d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 983d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 985d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 987b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9903a40ed3dSBarry Smith PetscFunctionReturn(0); 991fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9933a40ed3dSBarry Smith PetscFunctionReturn(0); 99404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99504929863SHong Zhang PetscFunctionReturn(0); 99657b952d6SSatish Balay } 99757b952d6SSatish Balay } 99857b952d6SSatish Balay 9990f5bd95cSBarry Smith if (isdraw) { 1000b0a32e0cSBarry Smith PetscDraw draw; 100157b952d6SSatish Balay PetscTruth isnull; 1002b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1003b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100457b952d6SSatish Balay } 100557b952d6SSatish Balay 100657b952d6SSatish Balay if (size == 1) { 10077adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100857b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1009d64ed03dSBarry Smith } else { 101057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101157b952d6SSatish Balay Mat A; 101257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1013d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10143eda8832SBarry Smith MatScalar *a; 101557b952d6SSatish Balay 1016f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1017f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10187adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101957b952d6SSatish Balay if (!rank) { 1020f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1021d64ed03dSBarry Smith } else { 1022f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102357b952d6SSatish Balay } 1024f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1025d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay /* copy over the A part */ 102957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1031b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103257b952d6SSatish Balay 103357b952d6SSatish Balay for (i=0; i<mbs; i++) { 1034899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1037899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103857b952d6SSatish Balay for (k=0; k<bs; k++) { 103997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1040cee3aa6bSSatish Balay col++; a += bs; 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay /* copy over the B part */ 104557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1048899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++) { 105397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 1058606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10596d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106155843e3eSBarry Smith /* 106255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1063b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106455843e3eSBarry Smith */ 1065b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1066f14a1c24SBarry Smith if (!rank) { 10677adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10686831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106957b952d6SSatish Balay } 1070b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107257b952d6SSatish Balay } 10733a40ed3dSBarry Smith PetscFunctionReturn(0); 107457b952d6SSatish Balay } 107557b952d6SSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107957b952d6SSatish Balay { 1080dfbe8321SBarry Smith PetscErrorCode ierr; 108132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108257b952d6SSatish Balay 1083d64ed03dSBarry Smith PetscFunctionBegin; 108432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1085fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1086b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1087fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10897b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10905cd90555SBarry Smith } else { 109179a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109257b952d6SSatish Balay } 10933a40ed3dSBarry Smith PetscFunctionReturn(0); 109457b952d6SSatish Balay } 109557b952d6SSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109979bdfe76SSatish Balay { 110079bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 110279bdfe76SSatish Balay 1103d64ed03dSBarry Smith PetscFunctionBegin; 1104aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1105d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110679bdfe76SSatish Balay #endif 11078798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11129c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111348e59246SSatish Balay #else 111405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111548e59246SSatish Balay #endif 111605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1117606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1118606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 111905b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1122899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1123606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1124901853e0SKris Buschelman 1125dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1130aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1131901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11333a40ed3dSBarry Smith PetscFunctionReturn(0); 113479bdfe76SSatish Balay } 113579bdfe76SSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1139cee3aa6bSSatish Balay { 1140cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1141dfbe8321SBarry Smith PetscErrorCode ierr; 1142b24ad042SBarry Smith PetscInt nt; 1143cee3aa6bSSatish Balay 1144d64ed03dSBarry Smith PetscFunctionBegin; 1145e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1146d0f46423SBarry Smith if (nt != A->cmap->n) { 114729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114847b4a8eaSLois Curfman McInnes } 1149e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1150d0f46423SBarry Smith if (nt != A->rmap->n) { 115129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115247b4a8eaSLois Curfman McInnes } 1153ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1154f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1155ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1156f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11573a40ed3dSBarry Smith PetscFunctionReturn(0); 1158cee3aa6bSSatish Balay } 1159cee3aa6bSSatish Balay 11604a2ae208SSatish Balay #undef __FUNCT__ 11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1163cee3aa6bSSatish Balay { 1164cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1165dfbe8321SBarry Smith PetscErrorCode ierr; 1166d64ed03dSBarry Smith 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1169f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1170ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1171f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11723a40ed3dSBarry Smith PetscFunctionReturn(0); 1173cee3aa6bSSatish Balay } 1174cee3aa6bSSatish Balay 11754a2ae208SSatish Balay #undef __FUNCT__ 11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1178cee3aa6bSSatish Balay { 1179cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1180dfbe8321SBarry Smith PetscErrorCode ierr; 1181a5ff213dSBarry Smith PetscTruth merged; 1182cee3aa6bSSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do nondiagonal part */ 11867c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1187a5ff213dSBarry Smith if (!merged) { 1188cee3aa6bSSatish Balay /* send it on its way */ 1189ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* do local part */ 11917c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1192cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1193a5ff213dSBarry Smith /* inserted in yy until the next line */ 1194ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith } else { 1196a5ff213dSBarry Smith /* do local part */ 1197a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1198a5ff213dSBarry Smith /* send it on its way */ 1199ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1200a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1201ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1202a5ff213dSBarry Smith } 12033a40ed3dSBarry Smith PetscFunctionReturn(0); 1204cee3aa6bSSatish Balay } 1205cee3aa6bSSatish Balay 12064a2ae208SSatish Balay #undef __FUNCT__ 12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1209cee3aa6bSSatish Balay { 1210cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1211dfbe8321SBarry Smith PetscErrorCode ierr; 1212cee3aa6bSSatish Balay 1213d64ed03dSBarry Smith PetscFunctionBegin; 1214cee3aa6bSSatish Balay /* do nondiagonal part */ 12157c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1216cee3aa6bSSatish Balay /* send it on its way */ 1217ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218cee3aa6bSSatish Balay /* do local part */ 12197c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1220cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1221cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1222cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1223ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226cee3aa6bSSatish Balay 1227cee3aa6bSSatish Balay /* 1228cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1229cee3aa6bSSatish Balay diagonal block 1230cee3aa6bSSatish Balay */ 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1234cee3aa6bSSatish Balay { 1235cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237d64ed03dSBarry Smith 1238d64ed03dSBarry Smith PetscFunctionBegin; 1239d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12403a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12413a40ed3dSBarry Smith PetscFunctionReturn(0); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 12444a2ae208SSatish Balay #undef __FUNCT__ 12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1247cee3aa6bSSatish Balay { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1253f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256026e39d0SSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1260acdf5bf4SSatish Balay { 1261acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12636849ba73SBarry Smith PetscErrorCode ierr; 1264d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1265d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1266899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1267acdf5bf4SSatish Balay 1268d64ed03dSBarry Smith PetscFunctionBegin; 1269abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1270acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1271acdf5bf4SSatish Balay 1272acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1273acdf5bf4SSatish Balay /* 1274acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1275acdf5bf4SSatish Balay */ 1276acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1277b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1278bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1279acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1280acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1281acdf5bf4SSatish Balay } 1282b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1283b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1284acdf5bf4SSatish Balay } 1285acdf5bf4SSatish Balay 128629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1287d9d09a02SSatish Balay lrow = row - brstart; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1290acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1291acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1292f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1293f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1294acdf5bf4SSatish Balay nztot = nzA + nzB; 1295acdf5bf4SSatish Balay 1296acdf5bf4SSatish Balay cmap = mat->garray; 1297acdf5bf4SSatish Balay if (v || idx) { 1298acdf5bf4SSatish Balay if (nztot) { 1299acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1300b24ad042SBarry Smith PetscInt imark = -1; 1301acdf5bf4SSatish Balay if (v) { 1302acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1303acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1304d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1305acdf5bf4SSatish Balay else break; 1306acdf5bf4SSatish Balay } 1307acdf5bf4SSatish Balay imark = i; 1308acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1309acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1310acdf5bf4SSatish Balay } 1311acdf5bf4SSatish Balay if (idx) { 1312acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1313acdf5bf4SSatish Balay if (imark > -1) { 1314acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1315bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay } else { 1318acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1319d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1320d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1321acdf5bf4SSatish Balay else break; 1322acdf5bf4SSatish Balay } 1323acdf5bf4SSatish Balay imark = i; 1324acdf5bf4SSatish Balay } 1325d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1326d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1327acdf5bf4SSatish Balay } 1328d64ed03dSBarry Smith } else { 1329d212a18eSSatish Balay if (idx) *idx = 0; 1330d212a18eSSatish Balay if (v) *v = 0; 1331d212a18eSSatish Balay } 1332acdf5bf4SSatish Balay } 1333acdf5bf4SSatish Balay *nz = nztot; 1334f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1335f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1342acdf5bf4SSatish Balay { 1343acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1344d64ed03dSBarry Smith 1345d64ed03dSBarry Smith PetscFunctionBegin; 1346abc0a331SBarry Smith if (!baij->getrowactive) { 134729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1348acdf5bf4SSatish Balay } 1349acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13503a40ed3dSBarry Smith PetscFunctionReturn(0); 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay 13534a2ae208SSatish Balay #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135658667388SSatish Balay { 135758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359d64ed03dSBarry Smith 1360d64ed03dSBarry Smith PetscFunctionBegin; 136158667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136258667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 136458667388SSatish Balay } 13650ac07820SSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13690ac07820SSatish Balay { 13704e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13714e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1372dfbe8321SBarry Smith PetscErrorCode ierr; 1373329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13740ac07820SSatish Balay 1375d64ed03dSBarry Smith PetscFunctionBegin; 1376d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13774e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13780e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1379de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13804e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13810e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1382de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13830ac07820SSatish Balay if (flag == MAT_LOCAL) { 13844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13874e220ebcSLois Curfman McInnes info->memory = isend[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13960ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13977adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1403d41123aaSBarry Smith } else { 140477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14050ac07820SSatish Balay } 14064e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14074e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14084e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14093a40ed3dSBarry Smith PetscFunctionReturn(0); 14100ac07820SSatish Balay } 14110ac07820SSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 141558667388SSatish Balay { 141658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1417dfbe8321SBarry Smith PetscErrorCode ierr; 141858667388SSatish Balay 1419d64ed03dSBarry Smith PetscFunctionBegin; 142012c028f9SKris Buschelman switch (op) { 1421512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1424a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 142512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14274e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142812c028f9SKris Buschelman break; 142912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14304e0d8c25SBarry Smith a->roworiented = flg; 14314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14324e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143312c028f9SKris Buschelman break; 14344e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1435290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 143612c028f9SKris Buschelman break; 143712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14384e0d8c25SBarry Smith a->donotstash = flg; 143912c028f9SKris Buschelman break; 144012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14414e0d8c25SBarry Smith a->ht_flag = flg; 144212c028f9SKris Buschelman break; 144377e54ba9SKris Buschelman case MAT_SYMMETRIC: 144477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14452188ac68SBarry Smith case MAT_HERMITIAN: 14462188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14474e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144877e54ba9SKris Buschelman break; 144912c028f9SKris Buschelman default: 1450ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1451d64ed03dSBarry Smith } 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 145358667388SSatish Balay } 145458667388SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14580ac07820SSatish Balay { 14590ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14600ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14610ac07820SSatish Balay Mat B; 1462dfbe8321SBarry Smith PetscErrorCode ierr; 1463d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1464d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14653eda8832SBarry Smith MatScalar *a; 14660ac07820SSatish Balay 1467d64ed03dSBarry Smith PetscFunctionBegin; 1468e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1469fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14707adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1471d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14727adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1473d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1474fc4dec0aSBarry Smith } else { 1475fc4dec0aSBarry Smith B = *matout; 1476fc4dec0aSBarry Smith } 14770ac07820SSatish Balay 14780ac07820SSatish Balay /* copy over the A part */ 14790ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14800ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1481b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14820ac07820SSatish Balay 14830ac07820SSatish Balay for (i=0; i<mbs; i++) { 1484899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14850ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14860ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1487899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14880ac07820SSatish Balay for (k=0; k<bs; k++) { 148997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14900ac07820SSatish Balay col++; a += bs; 14910ac07820SSatish Balay } 14920ac07820SSatish Balay } 14930ac07820SSatish Balay } 14940ac07820SSatish Balay /* copy over the B part */ 14950ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14960ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14970ac07820SSatish Balay for (i=0; i<mbs; i++) { 1498899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14990ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15000ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15010ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15020ac07820SSatish Balay for (k=0; k<bs; k++) { 150397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15040ac07820SSatish Balay col++; a += bs; 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 1508606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15090ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15100ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15110ac07820SSatish Balay 1512815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15130ac07820SSatish Balay *matout = B; 15140ac07820SSatish Balay } else { 1515273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15160ac07820SSatish Balay } 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15180ac07820SSatish Balay } 15190e95ebc0SSatish Balay 15204a2ae208SSatish Balay #undef __FUNCT__ 15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15230e95ebc0SSatish Balay { 152436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1526dfbe8321SBarry Smith PetscErrorCode ierr; 1527b24ad042SBarry Smith PetscInt s1,s2,s3; 15280e95ebc0SSatish Balay 1529d64ed03dSBarry Smith PetscFunctionBegin; 153036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153136c4a09eSSatish Balay if (rr) { 153236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153436c4a09eSSatish Balay /* Overlap communication with computation. */ 1535ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 153636c4a09eSSatish Balay } 15370e95ebc0SSatish Balay if (ll) { 15380e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1540a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15410e95ebc0SSatish Balay } 154236c4a09eSSatish Balay /* scale the diagonal block */ 154336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154436c4a09eSSatish Balay 154536c4a09eSSatish Balay if (rr) { 154636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1547ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1548a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154936c4a09eSSatish Balay } 155036c4a09eSSatish Balay 15513a40ed3dSBarry Smith PetscFunctionReturn(0); 15520e95ebc0SSatish Balay } 15530e95ebc0SSatish Balay 15544a2ae208SSatish Balay #undef __FUNCT__ 15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15570ac07820SSatish Balay { 15580ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15596849ba73SBarry Smith PetscErrorCode ierr; 1560b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1561d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1562b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1563b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15647adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1565d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15667adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15670ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15680ac07820SSatish Balay MPI_Status recv_status,*send_status; 15696543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15706543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15716543fbbaSBarry Smith #endif 15720ac07820SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 15740ac07820SSatish Balay /* first count number of contributors to each processor */ 1575b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1576b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1577b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15786543fbbaSBarry Smith j = 0; 15790ac07820SSatish Balay for (i=0; i<N; i++) { 15806543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15816543fbbaSBarry Smith lastidx = idx; 15826543fbbaSBarry Smith for (; j<size; j++) { 1583357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15846543fbbaSBarry Smith nprocs[2*j]++; 15856543fbbaSBarry Smith nprocs[2*j+1] = 1; 15866543fbbaSBarry Smith owner[i] = j; 15876543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15886543fbbaSBarry Smith found = PETSC_TRUE; 15896543fbbaSBarry Smith #endif 15906543fbbaSBarry Smith break; 15910ac07820SSatish Balay } 15920ac07820SSatish Balay } 15936543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15956543fbbaSBarry Smith found = PETSC_FALSE; 15966543fbbaSBarry Smith #endif 15970ac07820SSatish Balay } 1598c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15990ac07820SSatish Balay 16000ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1601c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* post receives: */ 1604b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1605b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16060ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1607b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16080ac07820SSatish Balay } 16090ac07820SSatish Balay 16100ac07820SSatish Balay /* do sends: 16110ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16120ac07820SSatish Balay the ith processor 16130ac07820SSatish Balay */ 1614b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1615b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1616b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16170ac07820SSatish Balay starts[0] = 0; 1618c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16190ac07820SSatish Balay for (i=0; i<N; i++) { 16200ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16210ac07820SSatish Balay } 16220ac07820SSatish Balay 16230ac07820SSatish Balay starts[0] = 0; 1624c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16250ac07820SSatish Balay count = 0; 16260ac07820SSatish Balay for (i=0; i<size; i++) { 1627c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1628b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16290ac07820SSatish Balay } 16300ac07820SSatish Balay } 1631606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16320ac07820SSatish Balay 1633357c27ecSBarry Smith base = owners[rank]; 16340ac07820SSatish Balay 16350ac07820SSatish Balay /* wait on receives */ 1636b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16370ac07820SSatish Balay source = lens + nrecvs; 16380ac07820SSatish Balay count = nrecvs; slen = 0; 16390ac07820SSatish Balay while (count) { 1640ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16410ac07820SSatish Balay /* unpack receives into our local space */ 1642b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16430ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16440ac07820SSatish Balay lens[imdex] = n; 16450ac07820SSatish Balay slen += n; 16460ac07820SSatish Balay count--; 16470ac07820SSatish Balay } 1648606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16490ac07820SSatish Balay 16500ac07820SSatish Balay /* move the data into the send scatter */ 1651b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16520ac07820SSatish Balay count = 0; 16530ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16540ac07820SSatish Balay values = rvalues + i*nmax; 16550ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16560ac07820SSatish Balay lrows[count++] = values[j] - base; 16570ac07820SSatish Balay } 16580ac07820SSatish Balay } 1659606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1660606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1661606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1662606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16630ac07820SSatish Balay 16640ac07820SSatish Balay /* actually zap the local rows */ 166572dacd9aSBarry Smith /* 166672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1667a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167072dacd9aSBarry Smith 1671f4df32b1SMatthew Knepley Contributed by: Matthew Knepley 167272dacd9aSBarry Smith */ 16739c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1674f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1675d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1676f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1677f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1678f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1679fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 168029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1681512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16826525c446SSatish Balay } 1683a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1684a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1685f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1686a07cd24cSSatish Balay } 1687a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1688a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16899c957beeSSatish Balay } else { 1690f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1691a07cd24cSSatish Balay } 16929c957beeSSatish Balay 1693606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1694a07cd24cSSatish Balay 16950ac07820SSatish Balay /* wait on sends */ 16960ac07820SSatish Balay if (nsends) { 169782502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1698ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1699606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17000ac07820SSatish Balay } 1701606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1702606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17030ac07820SSatish Balay 17043a40ed3dSBarry Smith PetscFunctionReturn(0); 17050ac07820SSatish Balay } 170672dacd9aSBarry Smith 17074a2ae208SSatish Balay #undef __FUNCT__ 17084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1709dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1710bb5a7306SBarry Smith { 1711bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1712dfbe8321SBarry Smith PetscErrorCode ierr; 1713d64ed03dSBarry Smith 1714d64ed03dSBarry Smith PetscFunctionBegin; 1715bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17163a40ed3dSBarry Smith PetscFunctionReturn(0); 1717bb5a7306SBarry Smith } 1718bb5a7306SBarry Smith 17196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17200ac07820SSatish Balay 17214a2ae208SSatish Balay #undef __FUNCT__ 17224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1723dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17247fc3c18eSBarry Smith { 17257fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17267fc3c18eSBarry Smith Mat a,b,c,d; 17277fc3c18eSBarry Smith PetscTruth flg; 1728dfbe8321SBarry Smith PetscErrorCode ierr; 17297fc3c18eSBarry Smith 17307fc3c18eSBarry Smith PetscFunctionBegin; 17317fc3c18eSBarry Smith a = matA->A; b = matA->B; 17327fc3c18eSBarry Smith c = matB->A; d = matB->B; 17337fc3c18eSBarry Smith 17347fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1735abc0a331SBarry Smith if (flg) { 17367fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17377fc3c18eSBarry Smith } 17387adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17397fc3c18eSBarry Smith PetscFunctionReturn(0); 17407fc3c18eSBarry Smith } 17417fc3c18eSBarry Smith 17423c896bc6SHong Zhang #undef __FUNCT__ 17433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17453c896bc6SHong Zhang { 17463c896bc6SHong Zhang PetscErrorCode ierr; 17473c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17483c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17493c896bc6SHong Zhang 17503c896bc6SHong Zhang PetscFunctionBegin; 17513c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17523c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17533c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17543c896bc6SHong Zhang } else { 17553c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17563c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17573c896bc6SHong Zhang } 17583c896bc6SHong Zhang PetscFunctionReturn(0); 17593c896bc6SHong Zhang } 1760273d9f13SBarry Smith 17614a2ae208SSatish Balay #undef __FUNCT__ 17624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1763dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1764273d9f13SBarry Smith { 1765dfbe8321SBarry Smith PetscErrorCode ierr; 1766273d9f13SBarry Smith 1767273d9f13SBarry Smith PetscFunctionBegin; 1768db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1769273d9f13SBarry Smith PetscFunctionReturn(0); 1770273d9f13SBarry Smith } 1771273d9f13SBarry Smith 17724fe895cdSHong Zhang #include "petscblaslapack.h" 17734fe895cdSHong Zhang #undef __FUNCT__ 17744fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17764fe895cdSHong Zhang { 17774fe895cdSHong Zhang PetscErrorCode ierr; 17784fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17794fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17804fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17814fe895cdSHong Zhang 17824fe895cdSHong Zhang PetscFunctionBegin; 17834fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17844fe895cdSHong Zhang PetscScalar alpha = a; 17854fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17864fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17870805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17884fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17894fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17904fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17910805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17934fe895cdSHong Zhang } else { 17944fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17954fe895cdSHong Zhang } 17964fe895cdSHong Zhang PetscFunctionReturn(0); 17974fe895cdSHong Zhang } 17984fe895cdSHong Zhang 179999cafbc1SBarry Smith #undef __FUNCT__ 180099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 180199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180299cafbc1SBarry Smith { 180399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180499cafbc1SBarry Smith PetscErrorCode ierr; 180599cafbc1SBarry Smith 180699cafbc1SBarry Smith PetscFunctionBegin; 180799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180999cafbc1SBarry Smith PetscFunctionReturn(0); 181099cafbc1SBarry Smith } 181199cafbc1SBarry Smith 181299cafbc1SBarry Smith #undef __FUNCT__ 181399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181599cafbc1SBarry Smith { 181699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181799cafbc1SBarry Smith PetscErrorCode ierr; 181899cafbc1SBarry Smith 181999cafbc1SBarry Smith PetscFunctionBegin; 182099cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 182199cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182299cafbc1SBarry Smith PetscFunctionReturn(0); 182399cafbc1SBarry Smith } 182499cafbc1SBarry Smith 182582094794SBarry Smith #undef __FUNCT__ 182682094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18274aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18284aa3045dSJed Brown { 18294aa3045dSJed Brown PetscErrorCode ierr; 18304aa3045dSJed Brown IS iscol_local; 18314aa3045dSJed Brown PetscInt csize; 18324aa3045dSJed Brown 18334aa3045dSJed Brown PetscFunctionBegin; 18344aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1835b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1836b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1837b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1838b79d0421SJed Brown } else { 18394aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1840b79d0421SJed Brown } 18414aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1842b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1843b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18444aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1845b79d0421SJed Brown } 18464aa3045dSJed Brown PetscFunctionReturn(0); 18474aa3045dSJed Brown } 18484aa3045dSJed Brown 18494aa3045dSJed Brown #undef __FUNCT__ 18504aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 185182094794SBarry Smith /* 185282094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 185382094794SBarry Smith in local and then by concatenating the local matrices the end result. 185482094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 185582094794SBarry Smith */ 18564aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 185782094794SBarry Smith { 185882094794SBarry Smith PetscErrorCode ierr; 185982094794SBarry Smith PetscMPIInt rank,size; 186082094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 186182094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 186282094794SBarry Smith Mat *local,M,Mreuse; 186382094794SBarry Smith MatScalar *vwork,*aa; 186482094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 186582094794SBarry Smith Mat_SeqBAIJ *aij; 186682094794SBarry Smith 186782094794SBarry Smith 186882094794SBarry Smith PetscFunctionBegin; 186982094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 187082094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 187182094794SBarry Smith 187282094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 187382094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 187482094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 187582094794SBarry Smith local = &Mreuse; 187682094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 187782094794SBarry Smith } else { 187882094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187982094794SBarry Smith Mreuse = *local; 188082094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 188182094794SBarry Smith } 188282094794SBarry Smith 188382094794SBarry Smith /* 188482094794SBarry Smith m - number of local rows 188582094794SBarry Smith n - number of columns (same on all processors) 188682094794SBarry Smith rstart - first row in new global matrix generated 188782094794SBarry Smith */ 188882094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188982094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 189082094794SBarry Smith m = m/bs; 189182094794SBarry Smith n = n/bs; 189282094794SBarry Smith 189382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 189482094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 189582094794SBarry Smith ii = aij->i; 189682094794SBarry Smith jj = aij->j; 189782094794SBarry Smith 189882094794SBarry Smith /* 189982094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 190082094794SBarry Smith portions of the matrix in order to do correct preallocation 190182094794SBarry Smith */ 190282094794SBarry Smith 190382094794SBarry Smith /* first get start and end of "diagonal" columns */ 190482094794SBarry Smith if (csize == PETSC_DECIDE) { 190582094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 190682094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 190782094794SBarry Smith nlocal = m; 190882094794SBarry Smith } else { 190982094794SBarry Smith nlocal = n/size + ((n % size) > rank); 191082094794SBarry Smith } 191182094794SBarry Smith } else { 191282094794SBarry Smith nlocal = csize/bs; 191382094794SBarry Smith } 191482094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 191582094794SBarry Smith rstart = rend - nlocal; 191682094794SBarry Smith if (rank == size - 1 && rend != n) { 191782094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191882094794SBarry Smith } 191982094794SBarry Smith 192082094794SBarry Smith /* next, compute all the lengths */ 192182094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 192282094794SBarry Smith olens = dlens + m; 192382094794SBarry Smith for (i=0; i<m; i++) { 192482094794SBarry Smith jend = ii[i+1] - ii[i]; 192582094794SBarry Smith olen = 0; 192682094794SBarry Smith dlen = 0; 192782094794SBarry Smith for (j=0; j<jend; j++) { 192882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192982094794SBarry Smith else dlen++; 193082094794SBarry Smith jj++; 193182094794SBarry Smith } 193282094794SBarry Smith olens[i] = olen; 193382094794SBarry Smith dlens[i] = dlen; 193482094794SBarry Smith } 193582094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 193682094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 193782094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193882094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193982094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 194082094794SBarry Smith } else { 194182094794SBarry Smith PetscInt ml,nl; 194282094794SBarry Smith 194382094794SBarry Smith M = *newmat; 194482094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 194582094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 194682094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 194782094794SBarry Smith /* 194882094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194982094794SBarry Smith rather than the slower MatSetValues(). 195082094794SBarry Smith */ 195182094794SBarry Smith M->was_assembled = PETSC_TRUE; 195282094794SBarry Smith M->assembled = PETSC_FALSE; 195382094794SBarry Smith } 195482094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 195582094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 195682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195782094794SBarry Smith ii = aij->i; 195882094794SBarry Smith jj = aij->j; 195982094794SBarry Smith aa = aij->a; 196082094794SBarry Smith for (i=0; i<m; i++) { 196182094794SBarry Smith row = rstart/bs + i; 196282094794SBarry Smith nz = ii[i+1] - ii[i]; 196382094794SBarry Smith cwork = jj; jj += nz; 196482094794SBarry Smith vwork = aa; aa += nz; 196582094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 196682094794SBarry Smith } 196782094794SBarry Smith 196882094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196982094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 197082094794SBarry Smith *newmat = M; 197182094794SBarry Smith 197282094794SBarry Smith /* save submatrix used in processor for next request */ 197382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197482094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 197582094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 197682094794SBarry Smith } 197782094794SBarry Smith 197882094794SBarry Smith PetscFunctionReturn(0); 197982094794SBarry Smith } 198082094794SBarry Smith 198182094794SBarry Smith #undef __FUNCT__ 198282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 198382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 198482094794SBarry Smith { 198582094794SBarry Smith MPI_Comm comm,pcomm; 198682094794SBarry Smith PetscInt first,local_size,nrows; 198782094794SBarry Smith const PetscInt *rows; 1988dbf0e21dSBarry Smith PetscMPIInt size; 198982094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 199082094794SBarry Smith PetscErrorCode ierr; 199182094794SBarry Smith 199282094794SBarry Smith PetscFunctionBegin; 199382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 199482094794SBarry Smith /* make a collective version of 'rowp' */ 199582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 199682094794SBarry Smith if (pcomm==comm) { 199782094794SBarry Smith crowp = rowp; 199882094794SBarry Smith } else { 199982094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 200082094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 200182094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 200282094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 200382094794SBarry Smith } 200482094794SBarry Smith /* collect the global row permutation and invert it */ 200582094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 200682094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 200782094794SBarry Smith if (pcomm!=comm) { 200882094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200982094794SBarry Smith } 201082094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 201182094794SBarry Smith /* get the local target indices */ 201282094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 201382094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 201482094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 201582094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 201682094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 201782094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201882094794SBarry Smith /* the column permutation is so much easier; 201982094794SBarry Smith make a local version of 'colp' and invert it */ 202082094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2021dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2022dbf0e21dSBarry Smith if (size==1) { 202382094794SBarry Smith lcolp = colp; 202482094794SBarry Smith } else { 202582094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 202782094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202882094794SBarry Smith } 2029dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 203082094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20314aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2032dbf0e21dSBarry Smith if (size>1) { 203382094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 203482094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 203582094794SBarry Smith } 203682094794SBarry Smith /* now we just get the submatrix */ 20374aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203882094794SBarry Smith /* clean up */ 203982094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 204082094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 204182094794SBarry Smith PetscFunctionReturn(0); 204282094794SBarry Smith } 204382094794SBarry Smith 20448c7482ecSBarry Smith #undef __FUNCT__ 20458c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20468c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20478c7482ecSBarry Smith { 20488c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20498c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20508c7482ecSBarry Smith 20518c7482ecSBarry Smith PetscFunctionBegin; 20528c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20538c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20548c7482ecSBarry Smith PetscFunctionReturn(0); 20558c7482ecSBarry Smith } 20568c7482ecSBarry Smith 2057*f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2058*f6d58c54SBarry Smith 2059*f6d58c54SBarry Smith #undef __FUNCT__ 2060*f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2061*f6d58c54SBarry Smith /* 2062*f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2063*f6d58c54SBarry Smith */ 2064*f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2065*f6d58c54SBarry Smith { 2066*f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2067*f6d58c54SBarry Smith PetscErrorCode ierr; 2068*f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2069*f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2070*f6d58c54SBarry Smith const PetscInt *is; 2071*f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2072*f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2073*f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2074*f6d58c54SBarry Smith IS *isa; 2075*f6d58c54SBarry Smith PetscTruth done,flg; 2076*f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2077*f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2078*f6d58c54SBarry Smith 2079*f6d58c54SBarry Smith PetscFunctionBegin; 2080*f6d58c54SBarry Smith if (!mat->assembled) { 2081*f6d58c54SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2082*f6d58c54SBarry Smith } 2083*f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2084*f6d58c54SBarry Smith 2085*f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2086*f6d58c54SBarry Smith 2087*f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2088*f6d58c54SBarry Smith M = mat->rmap->n/bs; 2089*f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2090*f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2091*f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2092*f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2093*f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2094*f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2095*f6d58c54SBarry Smith 2096*f6d58c54SBarry Smith c->ncolors = nis; 2097*f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2098*f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2099*f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2100*f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2101*f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2102*f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2103*f6d58c54SBarry Smith 2104*f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2105*f6d58c54SBarry Smith if (!baij->colmap) { 2106*f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2107*f6d58c54SBarry Smith } 2108*f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2109*f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2110*f6d58c54SBarry Smith 2111*f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2112*f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2113*f6d58c54SBarry Smith 2114*f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2115*f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2116*f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2117*f6d58c54SBarry Smith c->ncolumns[i] = n; 2118*f6d58c54SBarry Smith if (n) { 2119*f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2120*f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2121*f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2122*f6d58c54SBarry Smith } else { 2123*f6d58c54SBarry Smith c->columns[i] = 0; 2124*f6d58c54SBarry Smith } 2125*f6d58c54SBarry Smith 2126*f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2127*f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2128*f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2129*f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt*),&ncolsonproc);CHKERRQ(ierr); 2130*f6d58c54SBarry Smith disp = ncolsonproc + size; 2131*f6d58c54SBarry Smith 2132*f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2133*f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2134*f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2135*f6d58c54SBarry Smith if (!nctot) { 2136*f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2137*f6d58c54SBarry Smith } 2138*f6d58c54SBarry Smith 2139*f6d58c54SBarry Smith disp[0] = 0; 2140*f6d58c54SBarry Smith for (j=1; j<size; j++) { 2141*f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2142*f6d58c54SBarry Smith } 2143*f6d58c54SBarry Smith 2144*f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2145*f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2146*f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2147*f6d58c54SBarry Smith ierr = PetscFree(ncolsonproc);CHKERRQ(ierr); 2148*f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2149*f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2150*f6d58c54SBarry Smith nctot = n; 2151*f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2152*f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2153*f6d58c54SBarry Smith } else { 2154*f6d58c54SBarry Smith SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2155*f6d58c54SBarry Smith } 2156*f6d58c54SBarry Smith 2157*f6d58c54SBarry Smith /* 2158*f6d58c54SBarry Smith Mark all rows affect by these columns 2159*f6d58c54SBarry Smith */ 2160*f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2161*f6d58c54SBarry Smith flg = PETSC_FALSE; 2162*f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2163*f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2164*f6d58c54SBarry Smith /* crude, fast version */ 2165*f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2166*f6d58c54SBarry Smith /* loop over columns*/ 2167*f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2168*f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2169*f6d58c54SBarry Smith col = ltog[cols[j]]; 2170*f6d58c54SBarry Smith } else { 2171*f6d58c54SBarry Smith col = cols[j]; 2172*f6d58c54SBarry Smith } 2173*f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2174*f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2175*f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2176*f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2177*f6d58c54SBarry Smith } else { 2178*f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2179*f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr) 2180*f6d58c54SBarry Smith colb --; 2181*f6d58c54SBarry Smith #else 2182*f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2183*f6d58c54SBarry Smith #endif 2184*f6d58c54SBarry Smith if (colb == -1) { 2185*f6d58c54SBarry Smith m = 0; 2186*f6d58c54SBarry Smith } else { 2187*f6d58c54SBarry Smith colb = colb/bs; 2188*f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2189*f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2190*f6d58c54SBarry Smith } 2191*f6d58c54SBarry Smith } 2192*f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2193*f6d58c54SBarry Smith for (k=0; k<m; k++) { 2194*f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2195*f6d58c54SBarry Smith } 2196*f6d58c54SBarry Smith } 2197*f6d58c54SBarry Smith 2198*f6d58c54SBarry Smith /* count the number of hits */ 2199*f6d58c54SBarry Smith nrows = 0; 2200*f6d58c54SBarry Smith for (j=0; j<M; j++) { 2201*f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2202*f6d58c54SBarry Smith } 2203*f6d58c54SBarry Smith c->nrows[i] = nrows; 2204*f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2205*f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2206*f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2207*f6d58c54SBarry Smith nrows = 0; 2208*f6d58c54SBarry Smith for (j=0; j<M; j++) { 2209*f6d58c54SBarry Smith if (rowhit[j]) { 2210*f6d58c54SBarry Smith c->rows[i][nrows] = j; 2211*f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2212*f6d58c54SBarry Smith nrows++; 2213*f6d58c54SBarry Smith } 2214*f6d58c54SBarry Smith } 2215*f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2216*f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2217*f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2218*f6d58c54SBarry Smith rowhit[M] = M; 2219*f6d58c54SBarry Smith nrows = 0; 2220*f6d58c54SBarry Smith /* loop over columns*/ 2221*f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2222*f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2223*f6d58c54SBarry Smith col = ltog[cols[j]]; 2224*f6d58c54SBarry Smith } else { 2225*f6d58c54SBarry Smith col = cols[j]; 2226*f6d58c54SBarry Smith } 2227*f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2228*f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2229*f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2230*f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2231*f6d58c54SBarry Smith } else { 2232*f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2233*f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2234*f6d58c54SBarry Smith colb --; 2235*f6d58c54SBarry Smith #else 2236*f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2237*f6d58c54SBarry Smith #endif 2238*f6d58c54SBarry Smith if (colb == -1) { 2239*f6d58c54SBarry Smith m = 0; 2240*f6d58c54SBarry Smith } else { 2241*f6d58c54SBarry Smith colb = colb/bs; 2242*f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2243*f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2244*f6d58c54SBarry Smith } 2245*f6d58c54SBarry Smith } 2246*f6d58c54SBarry Smith 2247*f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2248*f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2249*f6d58c54SBarry Smith for (k=0; k<m; k++) { 2250*f6d58c54SBarry Smith currentcol = *rows++; 2251*f6d58c54SBarry Smith /* is it already in the list? */ 2252*f6d58c54SBarry Smith do { 2253*f6d58c54SBarry Smith mfm = fm; 2254*f6d58c54SBarry Smith fm = rowhit[fm]; 2255*f6d58c54SBarry Smith } while (fm < currentcol); 2256*f6d58c54SBarry Smith /* not in list so add it */ 2257*f6d58c54SBarry Smith if (fm != currentcol) { 2258*f6d58c54SBarry Smith nrows++; 2259*f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2260*f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2261*f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2262*f6d58c54SBarry Smith rowhit[currentcol] = fm; 2263*f6d58c54SBarry Smith fm = currentcol; 2264*f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2265*f6d58c54SBarry Smith } else { 2266*f6d58c54SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2267*f6d58c54SBarry Smith } 2268*f6d58c54SBarry Smith } 2269*f6d58c54SBarry Smith } 2270*f6d58c54SBarry Smith c->nrows[i] = nrows; 2271*f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2272*f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2273*f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2274*f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2275*f6d58c54SBarry Smith nrows = 0; 2276*f6d58c54SBarry Smith fm = rowhit[M]; 2277*f6d58c54SBarry Smith do { 2278*f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2279*f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2280*f6d58c54SBarry Smith fm = rowhit[fm]; 2281*f6d58c54SBarry Smith } while (fm < M); 2282*f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2283*f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2284*f6d58c54SBarry Smith } 2285*f6d58c54SBarry Smith 2286*f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2287*f6d58c54SBarry Smith /* 2288*f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2289*f6d58c54SBarry Smith */ 2290*f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2291*f6d58c54SBarry Smith PetscInt *garray; 2292*f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2293*f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2294*f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2295*f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2296*f6d58c54SBarry Smith } 2297*f6d58c54SBarry Smith } 2298*f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2299*f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2300*f6d58c54SBarry Smith CHKMEMQ; 2301*f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2302*f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2303*f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2304*f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2305*f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2306*f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2307*f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2308*f6d58c54SBarry Smith colb = col - cstart; 2309*f6d58c54SBarry Smith } else { 2310*f6d58c54SBarry Smith /* column is in "off-processor" part */ 2311*f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2312*f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2313*f6d58c54SBarry Smith colb --; 2314*f6d58c54SBarry Smith #else 2315*f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2316*f6d58c54SBarry Smith #endif 2317*f6d58c54SBarry Smith colb = colb/bs; 2318*f6d58c54SBarry Smith colb += cend - cstart; 2319*f6d58c54SBarry Smith } 2320*f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2321*f6d58c54SBarry Smith } 2322*f6d58c54SBarry Smith } 2323*f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2324*f6d58c54SBarry Smith /* Get gtol mapping */ 2325*f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2326*f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2327*f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2328*f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2329*f6d58c54SBarry Smith 2330*f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2331*f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2332*f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2333*f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2334*f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2335*f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2336*f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2337*f6d58c54SBarry Smith } 2338*f6d58c54SBarry Smith } 2339*f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2340*f6d58c54SBarry Smith } 2341*f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2342*f6d58c54SBarry Smith 2343*f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2344*f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2345*f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2346*f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2347*f6d58c54SBarry Smith CHKMEMQ; 2348*f6d58c54SBarry Smith PetscFunctionReturn(0); 2349*f6d58c54SBarry Smith } 2350*f6d58c54SBarry Smith 2351*f6d58c54SBarry Smith #undef __FUNCT__ 2352*f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2353*f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2354*f6d58c54SBarry Smith { 2355*f6d58c54SBarry Smith Mat B; 2356*f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2357*f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2358*f6d58c54SBarry Smith Mat_SeqAIJ *b; 2359*f6d58c54SBarry Smith PetscErrorCode ierr; 2360*f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2361*f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2362*f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2363*f6d58c54SBarry Smith 2364*f6d58c54SBarry Smith PetscFunctionBegin; 2365*f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2366*f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2367*f6d58c54SBarry Smith 2368*f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2369*f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2370*f6d58c54SBarry Smith */ 2371*f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2372*f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2373*f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2374*f6d58c54SBarry Smith } 2375*f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2376*f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2377*f6d58c54SBarry Smith displs = recvcounts + size; 2378*f6d58c54SBarry Smith for (i=0; i<size; i++) { 2379*f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2380*f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2381*f6d58c54SBarry Smith } 2382*f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2383*f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2384*f6d58c54SBarry Smith #else 2385*f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2386*f6d58c54SBarry Smith #endif 2387*f6d58c54SBarry Smith /* --------------------------------------------------------------- 2388*f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2389*f6d58c54SBarry Smith */ 2390*f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2391*f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2392*f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2393*f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2394*f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2395*f6d58c54SBarry Smith 2396*f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2397*f6d58c54SBarry Smith Copy my part of matrix column indices over 2398*f6d58c54SBarry Smith */ 2399*f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2400*f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2401*f6d58c54SBarry Smith a_jsendbuf = ad->j; 2402*f6d58c54SBarry Smith b_jsendbuf = bd->j; 2403*f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2404*f6d58c54SBarry Smith cnt = 0; 2405*f6d58c54SBarry Smith for (i=0; i<n; i++) { 2406*f6d58c54SBarry Smith 2407*f6d58c54SBarry Smith /* put in lower diagonal portion */ 2408*f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2409*f6d58c54SBarry Smith while (m > 0) { 2410*f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2411*f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2412*f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2413*f6d58c54SBarry Smith m--; 2414*f6d58c54SBarry Smith } 2415*f6d58c54SBarry Smith 2416*f6d58c54SBarry Smith /* put in diagonal portion */ 2417*f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2418*f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2419*f6d58c54SBarry Smith } 2420*f6d58c54SBarry Smith 2421*f6d58c54SBarry Smith /* put in upper diagonal portion */ 2422*f6d58c54SBarry Smith while (m-- > 0) { 2423*f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2424*f6d58c54SBarry Smith } 2425*f6d58c54SBarry Smith } 2426*f6d58c54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2427*f6d58c54SBarry Smith 2428*f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2429*f6d58c54SBarry Smith Gather all column indices to all processors 2430*f6d58c54SBarry Smith */ 2431*f6d58c54SBarry Smith for (i=0; i<size; i++) { 2432*f6d58c54SBarry Smith recvcounts[i] = 0; 2433*f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2434*f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2435*f6d58c54SBarry Smith } 2436*f6d58c54SBarry Smith } 2437*f6d58c54SBarry Smith displs[0] = 0; 2438*f6d58c54SBarry Smith for (i=1; i<size; i++) { 2439*f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2440*f6d58c54SBarry Smith } 2441*f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2442*f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2443*f6d58c54SBarry Smith #else 2444*f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2445*f6d58c54SBarry Smith #endif 2446*f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2447*f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2448*f6d58c54SBarry Smith */ 2449*f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2450*f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2451*f6d58c54SBarry Smith /* set the b->i indices */ 2452*f6d58c54SBarry Smith b->i[0] = 0; 2453*f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2454*f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2455*f6d58c54SBarry Smith } 2456*f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2457*f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2458*f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2459*f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2460*f6d58c54SBarry Smith 2461*f6d58c54SBarry Smith if (A->symmetric){ 2462*f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2463*f6d58c54SBarry Smith } else if (A->hermitian) { 2464*f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2465*f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2466*f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2467*f6d58c54SBarry Smith } 2468*f6d58c54SBarry Smith *newmat = B; 2469*f6d58c54SBarry Smith PetscFunctionReturn(0); 2470*f6d58c54SBarry Smith } 2471*f6d58c54SBarry Smith 2472*f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2473*f6d58c54SBarry Smith 24748c7482ecSBarry Smith 247579bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2476cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2477cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2478cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2479cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2480cc2dc46cSBarry Smith MatMult_MPIBAIJ, 248197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24827c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24837c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2484cc2dc46cSBarry Smith 0, 2485cc2dc46cSBarry Smith 0, 2486cc2dc46cSBarry Smith 0, 248797304618SKris Buschelman /*10*/ 0, 2488cc2dc46cSBarry Smith 0, 2489cc2dc46cSBarry Smith 0, 2490cc2dc46cSBarry Smith 0, 2491cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 249297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24937fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2494cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2495cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2496cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 249797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2498cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2499cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2500cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2501d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2502cc2dc46cSBarry Smith 0, 2503cc2dc46cSBarry Smith 0, 2504cc2dc46cSBarry Smith 0, 2505cc2dc46cSBarry Smith 0, 2506d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2507273d9f13SBarry Smith 0, 2508cc2dc46cSBarry Smith 0, 2509cc2dc46cSBarry Smith 0, 2510cc2dc46cSBarry Smith 0, 2511d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2512cc2dc46cSBarry Smith 0, 2513cc2dc46cSBarry Smith 0, 2514cc2dc46cSBarry Smith 0, 2515cc2dc46cSBarry Smith 0, 2516d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2517cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2518cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2519cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 25203c896bc6SHong Zhang MatCopy_MPIBAIJ, 2521d519adbfSMatthew Knepley /*44*/ 0, 2522cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2523cc2dc46cSBarry Smith 0, 2524cc2dc46cSBarry Smith 0, 2525cc2dc46cSBarry Smith 0, 2526d519adbfSMatthew Knepley /*49*/ 0, 2527cc2dc46cSBarry Smith 0, 2528cc2dc46cSBarry Smith 0, 2529cc2dc46cSBarry Smith 0, 2530cc2dc46cSBarry Smith 0, 2531*f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2532cc2dc46cSBarry Smith 0, 2533cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 253482094794SBarry Smith MatPermute_MPIBAIJ, 2535cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2536d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2537f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2538f14a1c24SBarry Smith MatView_MPIBAIJ, 2539357abbc8SBarry Smith 0, 25407843d17aSBarry Smith 0, 2541d519adbfSMatthew Knepley /*64*/ 0, 25427843d17aSBarry Smith 0, 25437843d17aSBarry Smith 0, 25447843d17aSBarry Smith 0, 25457843d17aSBarry Smith 0, 2546d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 25477843d17aSBarry Smith 0, 254897304618SKris Buschelman 0, 254997304618SKris Buschelman 0, 255097304618SKris Buschelman 0, 2551d519adbfSMatthew Knepley /*74*/ 0, 2552*f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 255397304618SKris Buschelman 0, 255497304618SKris Buschelman 0, 255597304618SKris Buschelman 0, 2556d519adbfSMatthew Knepley /*79*/ 0, 255797304618SKris Buschelman 0, 255897304618SKris Buschelman 0, 255997304618SKris Buschelman 0, 2560865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2561d519adbfSMatthew Knepley /*84*/ 0, 2562865e5f61SKris Buschelman 0, 2563865e5f61SKris Buschelman 0, 2564865e5f61SKris Buschelman 0, 2565865e5f61SKris Buschelman 0, 2566d519adbfSMatthew Knepley /*89*/ 0, 2567865e5f61SKris Buschelman 0, 2568865e5f61SKris Buschelman 0, 2569865e5f61SKris Buschelman 0, 2570865e5f61SKris Buschelman 0, 2571d519adbfSMatthew Knepley /*94*/ 0, 2572865e5f61SKris Buschelman 0, 2573865e5f61SKris Buschelman 0, 257499cafbc1SBarry Smith 0, 257599cafbc1SBarry Smith 0, 2576d519adbfSMatthew Knepley /*99*/ 0, 257799cafbc1SBarry Smith 0, 257899cafbc1SBarry Smith 0, 257999cafbc1SBarry Smith 0, 258099cafbc1SBarry Smith 0, 2581d519adbfSMatthew Knepley /*104*/0, 258299cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25838c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 25848c7482ecSBarry Smith 0, 25858c7482ecSBarry Smith 0, 2586d519adbfSMatthew Knepley /*109*/0, 25878c7482ecSBarry Smith 0, 25888c7482ecSBarry Smith 0, 25898c7482ecSBarry Smith 0, 25908c7482ecSBarry Smith 0, 2591*f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 25928c7482ecSBarry Smith 0, 25938c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 25948c7482ecSBarry Smith }; 259579bdfe76SSatish Balay 2596e18c124aSSatish Balay EXTERN_C_BEGIN 25974a2ae208SSatish Balay #undef __FUNCT__ 25984a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2599be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26005ef9f2a5SBarry Smith { 26015ef9f2a5SBarry Smith PetscFunctionBegin; 26025ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26035ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26045ef9f2a5SBarry Smith PetscFunctionReturn(0); 26055ef9f2a5SBarry Smith } 2606e18c124aSSatish Balay EXTERN_C_END 260779bdfe76SSatish Balay 2608273d9f13SBarry Smith EXTERN_C_BEGIN 2609f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2610d94109b8SHong Zhang EXTERN_C_END 2611d94109b8SHong Zhang 2612b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2613aac34f13SBarry Smith #undef __FUNCT__ 2614aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2615cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2616aac34f13SBarry Smith { 2617b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2618b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2619b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2620b8d659d7SLisandro Dalcin PetscScalar *values=0; 2621aac34f13SBarry Smith PetscErrorCode ierr; 2622aac34f13SBarry Smith 2623aac34f13SBarry Smith PetscFunctionBegin; 2624b8d659d7SLisandro Dalcin 2625b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 26267408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 26277408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2628d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2629d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2630d0f46423SBarry Smith m = B->rmap->n/bs; 2631d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2632d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2633d0f46423SBarry Smith cend = B->cmap->rend/bs; 2634b8d659d7SLisandro Dalcin 2635cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2636aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2637aac34f13SBarry Smith o_nnz = d_nnz + m; 2638aac34f13SBarry Smith for (i=0; i<m; i++) { 2639cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2640b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2641b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2642cf12db73SBarry Smith JJ = jj + ii[i]; 2643b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2644aac34f13SBarry Smith if (*JJ >= cstart) break; 2645aac34f13SBarry Smith JJ++; 2646aac34f13SBarry Smith } 2647aac34f13SBarry Smith d = 0; 2648b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2649aac34f13SBarry Smith if (*JJ++ >= cend) break; 2650aac34f13SBarry Smith d++; 2651aac34f13SBarry Smith } 2652aac34f13SBarry Smith d_nnz[i] = d; 2653b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2654aac34f13SBarry Smith } 2655aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2656aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2657aac34f13SBarry Smith 2658b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2659b8d659d7SLisandro Dalcin if (!values) { 2660b8d659d7SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2661b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2662b8d659d7SLisandro Dalcin } 2663b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2664b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2665cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2666cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2667cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2668b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2669aac34f13SBarry Smith } 2670aac34f13SBarry Smith 2671b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2672aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2673aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2674aac34f13SBarry Smith 2675aac34f13SBarry Smith PetscFunctionReturn(0); 2676aac34f13SBarry Smith } 2677b8d659d7SLisandro Dalcin EXTERN_C_END 2678aac34f13SBarry Smith 2679aac34f13SBarry Smith #undef __FUNCT__ 2680aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2681aac34f13SBarry Smith /*@C 2682aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2683aac34f13SBarry Smith (the default parallel PETSc format). 2684aac34f13SBarry Smith 2685aac34f13SBarry Smith Collective on MPI_Comm 2686aac34f13SBarry Smith 2687aac34f13SBarry Smith Input Parameters: 2688aac34f13SBarry Smith + A - the matrix 2689aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2690aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2691aac34f13SBarry Smith - v - optional values in the matrix 2692aac34f13SBarry Smith 2693aac34f13SBarry Smith Level: developer 2694aac34f13SBarry Smith 2695aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2696aac34f13SBarry Smith 2697aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2698aac34f13SBarry Smith @*/ 2699be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2700aac34f13SBarry Smith { 2701aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2702aac34f13SBarry Smith 2703aac34f13SBarry Smith PetscFunctionBegin; 2704aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2705aac34f13SBarry Smith if (f) { 2706aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2707aac34f13SBarry Smith } 2708aac34f13SBarry Smith PetscFunctionReturn(0); 2709aac34f13SBarry Smith } 2710aac34f13SBarry Smith 2711d94109b8SHong Zhang EXTERN_C_BEGIN 27124a2ae208SSatish Balay #undef __FUNCT__ 2713a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2714be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2715a23d5eceSKris Buschelman { 2716a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2717dfbe8321SBarry Smith PetscErrorCode ierr; 2718db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2719a23d5eceSKris Buschelman 2720a23d5eceSKris Buschelman PetscFunctionBegin; 2721db4efbfdSBarry Smith if (bs < 0) { 27227adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2723db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 27248c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2725db4efbfdSBarry Smith bs = PetscAbs(bs); 2726db4efbfdSBarry Smith } 2727db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2728db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2729db4efbfdSBarry Smith } 2730db4efbfdSBarry Smith bs = newbs; 2731db4efbfdSBarry Smith 2732a23d5eceSKris Buschelman 2733a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2734a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2735a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 273677431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 273777431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2738899cda47SBarry Smith 27397408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 27407408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2741d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2742d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2743899cda47SBarry Smith 2744a23d5eceSKris Buschelman if (d_nnz) { 2745d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 274677431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2747a23d5eceSKris Buschelman } 2748a23d5eceSKris Buschelman } 2749a23d5eceSKris Buschelman if (o_nnz) { 2750d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 275177431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2752a23d5eceSKris Buschelman } 2753a23d5eceSKris Buschelman } 2754a23d5eceSKris Buschelman 2755a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2756a23d5eceSKris Buschelman b->bs2 = bs*bs; 2757d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2758d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2759d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2760d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2761a23d5eceSKris Buschelman 2762a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2763d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2764a23d5eceSKris Buschelman } 2765d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2766d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2767d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2768d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2769a23d5eceSKris Buschelman 2770526dfc15SBarry Smith if (!B->preallocated) { 2771f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2772d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 27739c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 277452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2775f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2776d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 27779c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 277852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 27797adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2780526dfc15SBarry Smith } 2781a23d5eceSKris Buschelman 2782526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2783526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2784526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2785a23d5eceSKris Buschelman PetscFunctionReturn(0); 2786a23d5eceSKris Buschelman } 2787a23d5eceSKris Buschelman EXTERN_C_END 2788a23d5eceSKris Buschelman 2789a23d5eceSKris Buschelman EXTERN_C_BEGIN 2790be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2791be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 279292b32695SKris Buschelman EXTERN_C_END 27935bf65638SKris Buschelman 279482094794SBarry Smith 279582094794SBarry Smith EXTERN_C_BEGIN 279682094794SBarry Smith #undef __FUNCT__ 279782094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 279882094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 279982094794SBarry Smith { 280082094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 280182094794SBarry Smith PetscErrorCode ierr; 280282094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 280382094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 280482094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 280582094794SBarry Smith 280682094794SBarry Smith PetscFunctionBegin; 280782094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 280882094794SBarry Smith ii[0] = 0; 280982094794SBarry Smith CHKMEMQ; 281082094794SBarry Smith for (i=0; i<M; i++) { 281182094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 281282094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 281382094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 281482094794SBarry Smith /* remove one from count of matrix has diagonal */ 281582094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 281682094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 281782094794SBarry Smith } 281882094794SBarry Smith CHKMEMQ; 281982094794SBarry Smith } 282082094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 282182094794SBarry Smith cnt = 0; 282282094794SBarry Smith for (i=0; i<M; i++) { 282382094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 282482094794SBarry Smith if (garray[jo[j]] > rstart) break; 282582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 282682094794SBarry Smith CHKMEMQ; 282782094794SBarry Smith } 282882094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 282982094794SBarry Smith if (jd[k] != i) { 283082094794SBarry Smith jj[cnt++] = rstart + jd[k]; 283182094794SBarry Smith CHKMEMQ; 283282094794SBarry Smith } 283382094794SBarry Smith } 283482094794SBarry Smith for (;j<io[i+1]; j++) { 283582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 283682094794SBarry Smith CHKMEMQ; 283782094794SBarry Smith } 283882094794SBarry Smith } 283982094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 284082094794SBarry Smith PetscFunctionReturn(0); 284182094794SBarry Smith } 2842dbf0e21dSBarry Smith EXTERN_C_END 284382094794SBarry Smith 28440bad9183SKris Buschelman /*MC 2845fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28460bad9183SKris Buschelman 28470bad9183SKris Buschelman Options Database Keys: 28488c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28498c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28508c07d4e3SBarry Smith - -mat_use_hash_table <fact> 28510bad9183SKris Buschelman 28520bad9183SKris Buschelman Level: beginner 28530bad9183SKris Buschelman 28540bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 28550bad9183SKris Buschelman M*/ 28560bad9183SKris Buschelman 285792b32695SKris Buschelman EXTERN_C_BEGIN 2858a23d5eceSKris Buschelman #undef __FUNCT__ 28594a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2860be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2861273d9f13SBarry Smith { 2862273d9f13SBarry Smith Mat_MPIBAIJ *b; 2863dfbe8321SBarry Smith PetscErrorCode ierr; 2864273d9f13SBarry Smith PetscTruth flg; 2865273d9f13SBarry Smith 2866273d9f13SBarry Smith PetscFunctionBegin; 286738f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 286882502324SSatish Balay B->data = (void*)b; 286982502324SSatish Balay 2870085a36d4SBarry Smith 2871273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2872273d9f13SBarry Smith B->mapping = 0; 2873273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2874273d9f13SBarry Smith 2875273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28767adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 28777adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2878273d9f13SBarry Smith 2879273d9f13SBarry Smith /* build local table of row and column ownerships */ 2880899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2881273d9f13SBarry Smith 2882273d9f13SBarry Smith /* build cache for off array entries formed */ 28837adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2884273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2885273d9f13SBarry Smith b->colmap = PETSC_NULL; 2886273d9f13SBarry Smith b->garray = PETSC_NULL; 2887273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2888273d9f13SBarry Smith 2889273d9f13SBarry Smith /* stuff used in block assembly */ 2890273d9f13SBarry Smith b->barray = 0; 2891273d9f13SBarry Smith 2892273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2893273d9f13SBarry Smith b->lvec = 0; 2894273d9f13SBarry Smith b->Mvctx = 0; 2895273d9f13SBarry Smith 2896273d9f13SBarry Smith /* stuff for MatGetRow() */ 2897273d9f13SBarry Smith b->rowindices = 0; 2898273d9f13SBarry Smith b->rowvalues = 0; 2899273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith /* hash table stuff */ 2902273d9f13SBarry Smith b->ht = 0; 2903273d9f13SBarry Smith b->hd = 0; 2904273d9f13SBarry Smith b->ht_size = 0; 2905273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2906273d9f13SBarry Smith b->ht_fact = 0; 2907273d9f13SBarry Smith b->ht_total_ct = 0; 2908273d9f13SBarry Smith b->ht_insert_ct = 0; 2909273d9f13SBarry Smith 29107adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29118c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2912273d9f13SBarry Smith if (flg) { 2913f6275e2eSBarry Smith PetscReal fact = 1.39; 29144e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29158c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2916273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2917273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 29181e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2919273d9f13SBarry Smith } 29208c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 29218c07d4e3SBarry Smith 292282094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 292382094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 292482094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2925273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2926273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2927273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2928273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2929273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2930273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2931273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2932273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2933273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2934a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2935a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2936a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2937aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 293844ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 2939aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 294092b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 294192b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 294292b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 29435bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 29445bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 29455bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 294617667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 2947273d9f13SBarry Smith PetscFunctionReturn(0); 2948273d9f13SBarry Smith } 2949273d9f13SBarry Smith EXTERN_C_END 2950273d9f13SBarry Smith 2951209238afSKris Buschelman /*MC 2952002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2953209238afSKris Buschelman 2954209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2955209238afSKris Buschelman and MATMPIBAIJ otherwise. 2956209238afSKris Buschelman 2957209238afSKris Buschelman Options Database Keys: 2958209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2959209238afSKris Buschelman 2960209238afSKris Buschelman Level: beginner 2961209238afSKris Buschelman 2962aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2963209238afSKris Buschelman M*/ 2964209238afSKris Buschelman 2965209238afSKris Buschelman EXTERN_C_BEGIN 2966209238afSKris Buschelman #undef __FUNCT__ 2967209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2968be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 2969dfbe8321SBarry Smith { 29706849ba73SBarry Smith PetscErrorCode ierr; 2971b24ad042SBarry Smith PetscMPIInt size; 2972209238afSKris Buschelman 2973209238afSKris Buschelman PetscFunctionBegin; 29747adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2975209238afSKris Buschelman if (size == 1) { 2976209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2977209238afSKris Buschelman } else { 2978209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2979209238afSKris Buschelman } 2980209238afSKris Buschelman PetscFunctionReturn(0); 2981209238afSKris Buschelman } 2982209238afSKris Buschelman EXTERN_C_END 2983209238afSKris Buschelman 29844a2ae208SSatish Balay #undef __FUNCT__ 29854a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2986273d9f13SBarry Smith /*@C 2987aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2988273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2989273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2990273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2991273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2992273d9f13SBarry Smith 2993273d9f13SBarry Smith Collective on Mat 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Input Parameters: 2996273d9f13SBarry Smith + A - the matrix 2997273d9f13SBarry Smith . bs - size of blockk 2998273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2999273d9f13SBarry Smith submatrix (same for all local rows) 3000273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3001273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3002273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3003273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3004273d9f13SBarry Smith submatrix (same for all local rows). 3005273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3006273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3007273d9f13SBarry Smith each block row) or PETSC_NULL. 3008273d9f13SBarry Smith 300949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3010273d9f13SBarry Smith 3011273d9f13SBarry Smith Options Database Keys: 30128c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30138c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3014273d9f13SBarry Smith 3015273d9f13SBarry Smith Notes: 3016273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3017273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith Storage Information: 3020273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3021273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3022273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3023273d9f13SBarry Smith local matrix (a rectangular submatrix). 3024273d9f13SBarry Smith 3025273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3026273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3027273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3028273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3029273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3030273d9f13SBarry Smith 3031273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3032273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3033273d9f13SBarry Smith 3034273d9f13SBarry Smith .vb 3035273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3036273d9f13SBarry Smith ------------------- 3037273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3038273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3039273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3040273d9f13SBarry Smith ------------------- 3041273d9f13SBarry Smith .ve 3042273d9f13SBarry Smith 3043273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3044273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3045273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3046273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3047273d9f13SBarry Smith 3048273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3049273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3050273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3051273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3052273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3053273d9f13SBarry Smith matrices. 3054273d9f13SBarry Smith 3055aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3056aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3057aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3058aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3059aa95bbe8SBarry Smith 3060273d9f13SBarry Smith Level: intermediate 3061273d9f13SBarry Smith 3062273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3063273d9f13SBarry Smith 3064aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3065273d9f13SBarry Smith @*/ 3066be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3067273d9f13SBarry Smith { 3068b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3069273d9f13SBarry Smith 3070273d9f13SBarry Smith PetscFunctionBegin; 3071a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3072a23d5eceSKris Buschelman if (f) { 3073a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3074273d9f13SBarry Smith } 3075273d9f13SBarry Smith PetscFunctionReturn(0); 3076273d9f13SBarry Smith } 3077273d9f13SBarry Smith 30784a2ae208SSatish Balay #undef __FUNCT__ 30794a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 308079bdfe76SSatish Balay /*@C 308179bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 308279bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 308379bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 308479bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 308579bdfe76SSatish Balay performance can be increased by more than a factor of 50. 308679bdfe76SSatish Balay 3087db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3088db81eaa0SLois Curfman McInnes 308979bdfe76SSatish Balay Input Parameters: 3090db81eaa0SLois Curfman McInnes + comm - MPI communicator 309179bdfe76SSatish Balay . bs - size of blockk 309279bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 309392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 309492e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 309592e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 309692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 309792e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3098be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3099be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 310047a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 310179bdfe76SSatish Balay submatrix (same for all local rows) 310247a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 310392e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3104db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 310547a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 310679bdfe76SSatish Balay submatrix (same for all local rows). 310747a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 310892e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 310992e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 311079bdfe76SSatish Balay 311179bdfe76SSatish Balay Output Parameter: 311279bdfe76SSatish Balay . A - the matrix 311379bdfe76SSatish Balay 3114db81eaa0SLois Curfman McInnes Options Database Keys: 31158c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31168c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31173ffaccefSLois Curfman McInnes 3118175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3119ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3120175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3121175b88e8SBarry Smith 3122b259b22eSLois Curfman McInnes Notes: 312349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 312449a6f317SBarry Smith 312547a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 312647a75d0bSBarry Smith 312779bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 312879bdfe76SSatish Balay (possibly both). 312979bdfe76SSatish Balay 3130be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3131be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3132be79a94dSBarry Smith 313379bdfe76SSatish Balay Storage Information: 313479bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 313579bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 313679bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 313779bdfe76SSatish Balay local matrix (a rectangular submatrix). 313879bdfe76SSatish Balay 313979bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 314079bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 314179bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 314279bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 314379bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 314479bdfe76SSatish Balay 314579bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 314679bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 314779bdfe76SSatish Balay 3148db81eaa0SLois Curfman McInnes .vb 3149db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3150db81eaa0SLois Curfman McInnes ------------------- 3151db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3152db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3153db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3154db81eaa0SLois Curfman McInnes ------------------- 3155db81eaa0SLois Curfman McInnes .ve 315679bdfe76SSatish Balay 315779bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 315879bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315979bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 316057b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 316179bdfe76SSatish Balay 3162d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3163d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 316479bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 316592e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 316692e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31676da5968aSLois Curfman McInnes matrices. 316879bdfe76SSatish Balay 3169027ccd11SLois Curfman McInnes Level: intermediate 3170027ccd11SLois Curfman McInnes 317192e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 317279bdfe76SSatish Balay 3173aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 317479bdfe76SSatish Balay @*/ 3175be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 317679bdfe76SSatish Balay { 31776849ba73SBarry Smith PetscErrorCode ierr; 3178b24ad042SBarry Smith PetscMPIInt size; 317979bdfe76SSatish Balay 3180d64ed03dSBarry Smith PetscFunctionBegin; 3181f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3182f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3183d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3184273d9f13SBarry Smith if (size > 1) { 3185273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3186273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3187273d9f13SBarry Smith } else { 3188273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3189273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 31903914022bSBarry Smith } 31913a40ed3dSBarry Smith PetscFunctionReturn(0); 319279bdfe76SSatish Balay } 3193026e39d0SSatish Balay 31944a2ae208SSatish Balay #undef __FUNCT__ 31954a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 31966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31970ac07820SSatish Balay { 31980ac07820SSatish Balay Mat mat; 31990ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3200dfbe8321SBarry Smith PetscErrorCode ierr; 3201b24ad042SBarry Smith PetscInt len=0; 32020ac07820SSatish Balay 3203d64ed03dSBarry Smith PetscFunctionBegin; 32040ac07820SSatish Balay *newmat = 0; 32057adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3206d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32077adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32081d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32097fff6886SHong Zhang 32104beb1cfeSHong Zhang mat->factor = matin->factor; 3211273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32120ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32137fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32147fff6886SHong Zhang 3215273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3216d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32170ac07820SSatish Balay a->bs2 = oldmat->bs2; 32180ac07820SSatish Balay a->mbs = oldmat->mbs; 32190ac07820SSatish Balay a->nbs = oldmat->nbs; 32200ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32210ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32220ac07820SSatish Balay 3223d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr); 3224d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr); 3225899cda47SBarry Smith 32260ac07820SSatish Balay a->size = oldmat->size; 32270ac07820SSatish Balay a->rank = oldmat->rank; 3228aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3229aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3230aef5e8e0SSatish Balay a->rowindices = 0; 32310ac07820SSatish Balay a->rowvalues = 0; 32320ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 323330793edcSSatish Balay a->barray = 0; 3234899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3235899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3236899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3237899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32380ac07820SSatish Balay 3239133cdb44SSatish Balay /* hash table stuff */ 3240133cdb44SSatish Balay a->ht = 0; 3241133cdb44SSatish Balay a->hd = 0; 3242133cdb44SSatish Balay a->ht_size = 0; 3243133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 324425fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3245133cdb44SSatish Balay a->ht_total_ct = 0; 3246133cdb44SSatish Balay a->ht_insert_ct = 0; 3247133cdb44SSatish Balay 3248899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 32497adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 3250d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 32510ac07820SSatish Balay if (oldmat->colmap) { 3252aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 32530f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 325448e59246SSatish Balay #else 3255b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 325652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3257b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 325848e59246SSatish Balay #endif 32590ac07820SSatish Balay } else a->colmap = 0; 32604beb1cfeSHong Zhang 32610ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3262b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 326352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3264b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 32650ac07820SSatish Balay } else a->garray = 0; 32660ac07820SSatish Balay 32670ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 326852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 32690ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 327052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 32717fff6886SHong Zhang 32722e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 327352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 32742e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 327552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 32767adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 32770ac07820SSatish Balay *newmat = mat; 32784beb1cfeSHong Zhang 32793a40ed3dSBarry Smith PetscFunctionReturn(0); 32800ac07820SSatish Balay } 328157b952d6SSatish Balay 3282e090d566SSatish Balay #include "petscsys.h" 328357b952d6SSatish Balay 32844a2ae208SSatish Balay #undef __FUNCT__ 32854a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3286a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 328757b952d6SSatish Balay { 328857b952d6SSatish Balay Mat A; 32896849ba73SBarry Smith PetscErrorCode ierr; 3290b24ad042SBarry Smith int fd; 3291b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 329287828ca2SBarry Smith PetscScalar *vals,*buf; 329357b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 329457b952d6SSatish Balay MPI_Status status; 3295b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3296b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3297910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3298167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3299dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3300910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3301dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 330257b952d6SSatish Balay 3303d64ed03dSBarry Smith PetscFunctionBegin; 330477925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33058c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33068c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 330757b952d6SSatish Balay 3308d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3309d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 331057b952d6SSatish Balay if (!rank) { 3311b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3312e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3313552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33146c5fab8fSBarry Smith } 3315d64ed03dSBarry Smith 3316b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 331757b952d6SSatish Balay M = header[1]; N = header[2]; 331857b952d6SSatish Balay 331929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 332057b952d6SSatish Balay 332157b952d6SSatish Balay /* 332257b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 332357b952d6SSatish Balay divisible by the blocksize 332457b952d6SSatish Balay */ 332557b952d6SSatish Balay Mbs = M/bs; 3326dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 332757b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 332857b952d6SSatish Balay else Mbs++; 332957b952d6SSatish Balay if (extra_rows && !rank) { 33301e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 333157b952d6SSatish Balay } 3332537820f0SBarry Smith 333357b952d6SSatish Balay /* determine ownership of all rows */ 333457b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 333557b952d6SSatish Balay m = mbs*bs; 3336dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3337b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3338167e7480SBarry Smith 3339167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3340167e7480SBarry Smith if (!rank) { 3341167e7480SBarry Smith mmax = rowners[1]; 3342167e7480SBarry Smith for (i=2; i<size; i++) { 3343167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3344167e7480SBarry Smith } 3345ca02efcfSSatish Balay mmax*=bs; 3346167e7480SBarry Smith } else mmax = m; 3347167e7480SBarry Smith 334857b952d6SSatish Balay rowners[0] = 0; 3349cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3350cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 335157b952d6SSatish Balay rstart = rowners[rank]; 335257b952d6SSatish Balay rend = rowners[rank+1]; 335357b952d6SSatish Balay 335457b952d6SSatish Balay /* distribute row lengths to all processors */ 335519c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 335657b952d6SSatish Balay if (!rank) { 3357dc231df0SBarry Smith mend = m; 3358dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3359dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3360dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3361dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3362b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3363b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3364dc231df0SBarry Smith for (j=0; j<m; j++) { 3365dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3366dc231df0SBarry Smith } 3367dc231df0SBarry Smith for (i=1; i<size; i++) { 3368dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3369dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3370dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3371dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3372dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3373dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 337457b952d6SSatish Balay procsnz[i] += rowlengths[j]; 337557b952d6SSatish Balay } 3376dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 337757b952d6SSatish Balay } 3378606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3379dc231df0SBarry Smith } else { 3380dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3381dc231df0SBarry Smith } 338257b952d6SSatish Balay 3383dc231df0SBarry Smith if (!rank) { 338457b952d6SSatish Balay /* determine max buffer needed and allocate it */ 33858a8e0b3aSBarry Smith maxnz = procsnz[0]; 3386cdc0ba36SBarry Smith for (i=1; i<size; i++) { 338757b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 338857b952d6SSatish Balay } 3389b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 339057b952d6SSatish Balay 339157b952d6SSatish Balay /* read in my part of the matrix column indices */ 339257b952d6SSatish Balay nz = procsnz[0]; 339319c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 339457b952d6SSatish Balay mycols = ibuf; 3395cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3396e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3397cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3398cee3aa6bSSatish Balay 339957b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 340057b952d6SSatish Balay for (i=1; i<size-1; i++) { 340157b952d6SSatish Balay nz = procsnz[i]; 3402e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3403b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 340457b952d6SSatish Balay } 340557b952d6SSatish Balay /* read in the stuff for the last proc */ 340657b952d6SSatish Balay if (size != 1) { 340757b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3408e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 340957b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3410b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 341157b952d6SSatish Balay } 3412606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3413d64ed03dSBarry Smith } else { 341457b952d6SSatish Balay /* determine buffer space needed for message */ 341557b952d6SSatish Balay nz = 0; 341657b952d6SSatish Balay for (i=0; i<m; i++) { 341757b952d6SSatish Balay nz += locrowlens[i]; 341857b952d6SSatish Balay } 341919c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 342057b952d6SSatish Balay mycols = ibuf; 342157b952d6SSatish Balay /* receive message of column indices*/ 3422b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3423b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 342429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 342557b952d6SSatish Balay } 342657b952d6SSatish Balay 342757b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3428dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3429dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3430dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3431dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3432dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 343357b952d6SSatish Balay rowcount = 0; nzcount = 0; 343457b952d6SSatish Balay for (i=0; i<mbs; i++) { 343557b952d6SSatish Balay dcount = 0; 343657b952d6SSatish Balay odcount = 0; 343757b952d6SSatish Balay for (j=0; j<bs; j++) { 343857b952d6SSatish Balay kmax = locrowlens[rowcount]; 343957b952d6SSatish Balay for (k=0; k<kmax; k++) { 344057b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 344157b952d6SSatish Balay if (!mask[tmp]) { 344257b952d6SSatish Balay mask[tmp] = 1; 344357b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 344457b952d6SSatish Balay else masked1[dcount++] = tmp; 344557b952d6SSatish Balay } 344657b952d6SSatish Balay } 344757b952d6SSatish Balay rowcount++; 344857b952d6SSatish Balay } 3449cee3aa6bSSatish Balay 345057b952d6SSatish Balay dlens[i] = dcount; 345157b952d6SSatish Balay odlens[i] = odcount; 3452cee3aa6bSSatish Balay 345357b952d6SSatish Balay /* zero out the mask elements we set */ 345457b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 345557b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 345657b952d6SSatish Balay } 3457cee3aa6bSSatish Balay 345857b952d6SSatish Balay /* create our matrix */ 3459f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3460f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 346178ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 346278ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 346378ae41b4SKris Buschelman 346457b952d6SSatish Balay if (!rank) { 346519c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 346657b952d6SSatish Balay /* read in my part of the matrix numerical values */ 346757b952d6SSatish Balay nz = procsnz[0]; 346857b952d6SSatish Balay vals = buf; 3469cee3aa6bSSatish Balay mycols = ibuf; 3470cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3471e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3472cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3473537820f0SBarry Smith 347457b952d6SSatish Balay /* insert into matrix */ 347557b952d6SSatish Balay jj = rstart*bs; 347657b952d6SSatish Balay for (i=0; i<m; i++) { 3477dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 347857b952d6SSatish Balay mycols += locrowlens[i]; 347957b952d6SSatish Balay vals += locrowlens[i]; 348057b952d6SSatish Balay jj++; 348157b952d6SSatish Balay } 348257b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 348357b952d6SSatish Balay for (i=1; i<size-1; i++) { 348457b952d6SSatish Balay nz = procsnz[i]; 348557b952d6SSatish Balay vals = buf; 3486e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 34877adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 348857b952d6SSatish Balay } 348957b952d6SSatish Balay /* the last proc */ 349057b952d6SSatish Balay if (size != 1){ 349157b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3492cee3aa6bSSatish Balay vals = buf; 3493e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 349457b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 34957adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 349657b952d6SSatish Balay } 3497606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3498d64ed03dSBarry Smith } else { 349957b952d6SSatish Balay /* receive numeric values */ 350019c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 350157b952d6SSatish Balay 350257b952d6SSatish Balay /* receive message of values*/ 350357b952d6SSatish Balay vals = buf; 3504cee3aa6bSSatish Balay mycols = ibuf; 35057adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3506ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 350729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 350857b952d6SSatish Balay 350957b952d6SSatish Balay /* insert into matrix */ 351057b952d6SSatish Balay jj = rstart*bs; 3511cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3512dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 351357b952d6SSatish Balay mycols += locrowlens[i]; 351457b952d6SSatish Balay vals += locrowlens[i]; 351557b952d6SSatish Balay jj++; 351657b952d6SSatish Balay } 351757b952d6SSatish Balay } 3518606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3519606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3520606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3521dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3522dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3523dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 35246d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 35256d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 352678ae41b4SKris Buschelman 352778ae41b4SKris Buschelman *newmat = A; 35283a40ed3dSBarry Smith PetscFunctionReturn(0); 352957b952d6SSatish Balay } 353057b952d6SSatish Balay 35314a2ae208SSatish Balay #undef __FUNCT__ 35324a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3533133cdb44SSatish Balay /*@ 3534133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3535133cdb44SSatish Balay 3536133cdb44SSatish Balay Input Parameters: 3537133cdb44SSatish Balay . mat - the matrix 3538133cdb44SSatish Balay . fact - factor 3539133cdb44SSatish Balay 3540fee21e36SBarry Smith Collective on Mat 3541fee21e36SBarry Smith 35428c890885SBarry Smith Level: advanced 35438c890885SBarry Smith 3544133cdb44SSatish Balay Notes: 35458c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3546133cdb44SSatish Balay 3547133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3548133cdb44SSatish Balay 3549133cdb44SSatish Balay .seealso: MatSetOption() 3550133cdb44SSatish Balay @*/ 3551be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3552133cdb44SSatish Balay { 3553dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 35545bf65638SKris Buschelman 35555bf65638SKris Buschelman PetscFunctionBegin; 35565bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 35575bf65638SKris Buschelman if (f) { 35585bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 35595bf65638SKris Buschelman } 35605bf65638SKris Buschelman PetscFunctionReturn(0); 35615bf65638SKris Buschelman } 35625bf65638SKris Buschelman 3563be1d678aSKris Buschelman EXTERN_C_BEGIN 35645bf65638SKris Buschelman #undef __FUNCT__ 35655bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3566be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 35675bf65638SKris Buschelman { 356825fdafccSSatish Balay Mat_MPIBAIJ *baij; 3569133cdb44SSatish Balay 3570133cdb44SSatish Balay PetscFunctionBegin; 3571133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3572133cdb44SSatish Balay baij->ht_fact = fact; 3573133cdb44SSatish Balay PetscFunctionReturn(0); 3574133cdb44SSatish Balay } 3575be1d678aSKris Buschelman EXTERN_C_END 3576f2a5309cSSatish Balay 35774a2ae208SSatish Balay #undef __FUNCT__ 35784a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3579be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3580f2a5309cSSatish Balay { 3581f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3582f2a5309cSSatish Balay PetscFunctionBegin; 3583f2a5309cSSatish Balay *Ad = a->A; 3584f2a5309cSSatish Balay *Ao = a->B; 3585195d93cdSBarry Smith *colmap = a->garray; 3586f2a5309cSSatish Balay PetscFunctionReturn(0); 3587f2a5309cSSatish Balay } 358885535b8eSBarry Smith 358985535b8eSBarry Smith /* 359085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 359185535b8eSBarry Smith */ 359285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 359385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 359485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 359585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 359685535b8eSBarry Smith #endif 359785535b8eSBarry Smith 359885535b8eSBarry Smith #undef __FUNCT__ 359985535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 360085535b8eSBarry Smith /*@C 360185535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 360285535b8eSBarry Smith 360385535b8eSBarry Smith Collective on Mat 360485535b8eSBarry Smith 360585535b8eSBarry Smith Input Parameters: 360685535b8eSBarry Smith + mat - the matrix 360785535b8eSBarry Smith . min - number of input rows 360885535b8eSBarry Smith . im - input rows 360985535b8eSBarry Smith . nin - number of input columns 361085535b8eSBarry Smith . in - input columns 361185535b8eSBarry Smith . v - numerical values input 361285535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 361385535b8eSBarry Smith 361485535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 361585535b8eSBarry Smith 361685535b8eSBarry Smith Level: advanced 361785535b8eSBarry Smith 361885535b8eSBarry Smith .seealso: MatSetValuesBlocked() 361985535b8eSBarry Smith @*/ 362085535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 362185535b8eSBarry Smith { 362285535b8eSBarry Smith /* convert input arguments to C version */ 362385535b8eSBarry Smith Mat mat = *matin; 362485535b8eSBarry Smith PetscInt m = *min, n = *nin; 362585535b8eSBarry Smith InsertMode addv = *addvin; 362685535b8eSBarry Smith 362785535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 362885535b8eSBarry Smith const MatScalar *value; 362985535b8eSBarry Smith MatScalar *barray=baij->barray; 363085535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 363185535b8eSBarry Smith PetscErrorCode ierr; 363285535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 363385535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3634d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 363585535b8eSBarry Smith 363685535b8eSBarry Smith PetscFunctionBegin; 363785535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 363885535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 363985535b8eSBarry Smith mat->insertmode = addv; 364085535b8eSBarry Smith } 364185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 364285535b8eSBarry Smith else if (mat->insertmode != addv) { 364385535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 364485535b8eSBarry Smith } 364585535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 364685535b8eSBarry Smith #endif 364785535b8eSBarry Smith if (mat->assembled) { 364885535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 364985535b8eSBarry Smith mat->assembled = PETSC_FALSE; 365085535b8eSBarry Smith } 365185535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 365285535b8eSBarry Smith 365385535b8eSBarry Smith 365485535b8eSBarry Smith if(!barray) { 365585535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 365685535b8eSBarry Smith baij->barray = barray; 365785535b8eSBarry Smith } 365885535b8eSBarry Smith 365985535b8eSBarry Smith if (roworiented) { 366085535b8eSBarry Smith stepval = (n-1)*bs; 366185535b8eSBarry Smith } else { 366285535b8eSBarry Smith stepval = (m-1)*bs; 366385535b8eSBarry Smith } 366485535b8eSBarry Smith for (i=0; i<m; i++) { 366585535b8eSBarry Smith if (im[i] < 0) continue; 366685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 366785535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 366885535b8eSBarry Smith #endif 366985535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 367085535b8eSBarry Smith row = im[i] - rstart; 367185535b8eSBarry Smith for (j=0; j<n; j++) { 367285535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 367385535b8eSBarry Smith if ((roworiented) && (n == 1)) { 367485535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 367585535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 367685535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 367785535b8eSBarry Smith } else { /* Here a copy is required */ 367885535b8eSBarry Smith if (roworiented) { 367985535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 368085535b8eSBarry Smith } else { 368185535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 368285535b8eSBarry Smith } 368385535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 368485535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 368585535b8eSBarry Smith *barray++ = *value++; 368685535b8eSBarry Smith } 368785535b8eSBarry Smith } 368885535b8eSBarry Smith barray -=bs2; 368985535b8eSBarry Smith } 369085535b8eSBarry Smith 369185535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 369285535b8eSBarry Smith col = in[j] - cstart; 369397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 369485535b8eSBarry Smith } 369585535b8eSBarry Smith else if (in[j] < 0) continue; 369685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 369785535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 369885535b8eSBarry Smith #endif 369985535b8eSBarry Smith else { 370085535b8eSBarry Smith if (mat->was_assembled) { 370185535b8eSBarry Smith if (!baij->colmap) { 370285535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 370385535b8eSBarry Smith } 370485535b8eSBarry Smith 370585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 370685535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 370785535b8eSBarry Smith { PetscInt data; 370885535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 370985535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 371085535b8eSBarry Smith } 371185535b8eSBarry Smith #else 371285535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 371385535b8eSBarry Smith #endif 371485535b8eSBarry Smith #endif 371585535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 371685535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 371785535b8eSBarry Smith col = (col - 1)/bs; 371885535b8eSBarry Smith #else 371985535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 372085535b8eSBarry Smith #endif 372185535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 372285535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 372385535b8eSBarry Smith col = in[j]; 372485535b8eSBarry Smith } 372585535b8eSBarry Smith } 372685535b8eSBarry Smith else col = in[j]; 372797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 372885535b8eSBarry Smith } 372985535b8eSBarry Smith } 373085535b8eSBarry Smith } else { 373185535b8eSBarry Smith if (!baij->donotstash) { 373285535b8eSBarry Smith if (roworiented) { 373385535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 373485535b8eSBarry Smith } else { 373585535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 373685535b8eSBarry Smith } 373785535b8eSBarry Smith } 373885535b8eSBarry Smith } 373985535b8eSBarry Smith } 374085535b8eSBarry Smith 374185535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 374285535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 374385535b8eSBarry Smith PetscFunctionReturn(0); 374485535b8eSBarry Smith } 3745