xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision fc4dec0ab267e831b41a38fdd32730b7f8abdc58)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
164a2ae208SSatish Balay #undef __FUNCT__
17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
197843d17aSBarry Smith {
207843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
21dfbe8321SBarry Smith   PetscErrorCode ierr;
22985db425SBarry Smith   PetscInt       i,*idxb = 0;
2387828ca2SBarry Smith   PetscScalar    *va,*vb;
247843d17aSBarry Smith   Vec            vtmp;
257843d17aSBarry Smith 
267843d17aSBarry Smith   PetscFunctionBegin;
277843d17aSBarry Smith 
28985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
291ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
30985db425SBarry Smith   if (idx) {
31ff6e566aSBarry Smith     for (i=0; i<A->cmap.n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap.rstart;}
32985db425SBarry Smith   }
337843d17aSBarry Smith 
34899cda47SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr);
35985db425SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap.n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
36985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
371ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
387843d17aSBarry Smith 
39899cda47SBarry Smith   for (i=0; i<A->rmap.n; i++){
40985db425SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap.bs*a->garray[idxb[i]/A->cmap.bs] + (idxb[i] % A->cmap.bs);}
417843d17aSBarry Smith   }
427843d17aSBarry Smith 
431ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
441ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
45985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
46ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
477843d17aSBarry Smith   PetscFunctionReturn(0);
487843d17aSBarry Smith }
497843d17aSBarry Smith 
507fc3c18eSBarry Smith EXTERN_C_BEGIN
514a2ae208SSatish Balay #undef __FUNCT__
524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
547fc3c18eSBarry Smith {
557fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
56dfbe8321SBarry Smith   PetscErrorCode ierr;
577fc3c18eSBarry Smith 
587fc3c18eSBarry Smith   PetscFunctionBegin;
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
607fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
617fc3c18eSBarry Smith   PetscFunctionReturn(0);
627fc3c18eSBarry Smith }
637fc3c18eSBarry Smith EXTERN_C_END
647fc3c18eSBarry Smith 
657fc3c18eSBarry Smith EXTERN_C_BEGIN
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
697fc3c18eSBarry Smith {
707fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
71dfbe8321SBarry Smith   PetscErrorCode ierr;
727fc3c18eSBarry Smith 
737fc3c18eSBarry Smith   PetscFunctionBegin;
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
757fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
767fc3c18eSBarry Smith   PetscFunctionReturn(0);
777fc3c18eSBarry Smith }
787fc3c18eSBarry Smith EXTERN_C_END
797fc3c18eSBarry Smith 
80537820f0SBarry Smith /*
81537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
8357b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
8457b952d6SSatish Balay    length of colmap equals the global matrix length.
8557b952d6SSatish Balay */
864a2ae208SSatish Balay #undef __FUNCT__
874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8957b952d6SSatish Balay {
9057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9157b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
926849ba73SBarry Smith   PetscErrorCode ierr;
93899cda47SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap.bs;
9457b952d6SSatish Balay 
95d64ed03dSBarry Smith   PetscFunctionBegin;
96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
97f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9848e59246SSatish Balay   for (i=0; i<nbs; i++){
990f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
10048e59246SSatish Balay   }
10148e59246SSatish Balay #else
102b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10352e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
105928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10648e59246SSatish Balay #endif
1073a40ed3dSBarry Smith   PetscFunctionReturn(0);
10857b952d6SSatish Balay }
10957b952d6SSatish Balay 
11080c1aa95SSatish Balay #define CHUNKSIZE  10
11180c1aa95SSatish Balay 
112f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11380c1aa95SSatish Balay { \
11480c1aa95SSatish Balay  \
11580c1aa95SSatish Balay     brow = row/bs;  \
11680c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
117ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11880c1aa95SSatish Balay       bcol = col/bs; \
11980c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
120ab26458aSBarry Smith       low = 0; high = nrow; \
121ab26458aSBarry Smith       while (high-low > 3) { \
122ab26458aSBarry Smith         t = (low+high)/2; \
123ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
124ab26458aSBarry Smith         else              low  = t; \
125ab26458aSBarry Smith       } \
126ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12780c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12880c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12980c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
130eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
131eada6651SSatish Balay           else                    *bap  = value;  \
132ac7a638eSSatish Balay           goto a_noinsert; \
13380c1aa95SSatish Balay         } \
13480c1aa95SSatish Balay       } \
13589280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
136085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
137421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13880c1aa95SSatish Balay       N = nrow++ - 1;  \
13980c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
14080c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
14180c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1423eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14380c1aa95SSatish Balay       } \
1443eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14580c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14680c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
147ac7a638eSSatish Balay       a_noinsert:; \
14880c1aa95SSatish Balay     ailen[brow] = nrow; \
14980c1aa95SSatish Balay }
15057b952d6SSatish Balay 
151ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
152ac7a638eSSatish Balay { \
153ac7a638eSSatish Balay     brow = row/bs;  \
154ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
155ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
156ac7a638eSSatish Balay       bcol = col/bs; \
157ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
158ac7a638eSSatish Balay       low = 0; high = nrow; \
159ac7a638eSSatish Balay       while (high-low > 3) { \
160ac7a638eSSatish Balay         t = (low+high)/2; \
161ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
162ac7a638eSSatish Balay         else              low  = t; \
163ac7a638eSSatish Balay       } \
164ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
165ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
166ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
167ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
168ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
169ac7a638eSSatish Balay           else                    *bap  = value;  \
170ac7a638eSSatish Balay           goto b_noinsert; \
171ac7a638eSSatish Balay         } \
172ac7a638eSSatish Balay       } \
17389280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
174085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
175421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
176085a36d4SBarry Smith       CHKMEMQ;\
177ac7a638eSSatish Balay       N = nrow++ - 1;  \
178ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
179ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
180ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1813eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
182ac7a638eSSatish Balay       } \
1833eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
184ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
185ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
186ac7a638eSSatish Balay       b_noinsert:; \
187ac7a638eSSatish Balay     bilen[brow] = nrow; \
188ac7a638eSSatish Balay }
189ac7a638eSSatish Balay 
1904a2ae208SSatish Balay #undef __FUNCT__
1914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
192b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19357b952d6SSatish Balay {
19457b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19593fea6afSBarry Smith   MatScalar      value;
196273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
197dfbe8321SBarry Smith   PetscErrorCode ierr;
198b24ad042SBarry Smith   PetscInt       i,j,row,col;
199899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
200899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
201899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
20257b952d6SSatish Balay 
203eada6651SSatish Balay   /* Some Variables required in the macro */
20480c1aa95SSatish Balay   Mat            A = baij->A;
20580c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
206b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2073eda8832SBarry Smith   MatScalar      *aa=a->a;
208ac7a638eSSatish Balay 
209ac7a638eSSatish Balay   Mat            B = baij->B;
210ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
211b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2123eda8832SBarry Smith   MatScalar      *ba=b->a;
213ac7a638eSSatish Balay 
214b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
215b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2163eda8832SBarry Smith   MatScalar      *ap,*bap;
21780c1aa95SSatish Balay 
218d64ed03dSBarry Smith   PetscFunctionBegin;
21957b952d6SSatish Balay   for (i=0; i<m; i++) {
2205ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2212515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
222899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
223639f9d9dSBarry Smith #endif
22457b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22557b952d6SSatish Balay       row = im[i] - rstart_orig;
22657b952d6SSatish Balay       for (j=0; j<n; j++) {
22757b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22857b952d6SSatish Balay           col = in[j] - cstart_orig;
22957b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23180c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23273959e64SBarry Smith         } else if (in[j] < 0) continue;
2332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
234899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);}
235639f9d9dSBarry Smith #endif
23657b952d6SSatish Balay         else {
23757b952d6SSatish Balay           if (mat->was_assembled) {
238905e6a2fSBarry Smith             if (!baij->colmap) {
239905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
240905e6a2fSBarry Smith             }
241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2420f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
243bba1ac68SSatish Balay             col  = col - 1;
24448e59246SSatish Balay #else
245bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24648e59246SSatish Balay #endif
24757b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24857b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2498295de27SSatish Balay               col =  in[j];
2509bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2519bf004c3SSatish Balay               B = baij->B;
2529bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2539bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2549bf004c3SSatish Balay               ba=b->a;
255bba1ac68SSatish Balay             } else col += in[j]%bs;
2568295de27SSatish Balay           } else col = in[j];
25757b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25890da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25990da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
26057b952d6SSatish Balay         }
26157b952d6SSatish Balay       }
262d64ed03dSBarry Smith     } else {
26390f02eecSBarry Smith       if (!baij->donotstash) {
264ff2fd236SBarry Smith         if (roworiented) {
2656fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
266ff2fd236SBarry Smith         } else {
2676fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
26857b952d6SSatish Balay         }
26957b952d6SSatish Balay       }
27057b952d6SSatish Balay     }
27190f02eecSBarry Smith   }
2723a40ed3dSBarry Smith   PetscFunctionReturn(0);
27357b952d6SSatish Balay }
27457b952d6SSatish Balay 
2754a2ae208SSatish Balay #undef __FUNCT__
27697e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
278ab26458aSBarry Smith {
279ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
280dd6ea824SBarry Smith   const PetscScalar *value;
281f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
282273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
283dfbe8321SBarry Smith   PetscErrorCode    ierr;
284899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
285899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
286899cda47SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
287ab26458aSBarry Smith 
288b16ae2b1SBarry Smith   PetscFunctionBegin;
28930793edcSSatish Balay   if(!barray) {
29082502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29182502324SSatish Balay     baij->barray = barray;
29230793edcSSatish Balay   }
29330793edcSSatish Balay 
294ab26458aSBarry Smith   if (roworiented) {
295ab26458aSBarry Smith     stepval = (n-1)*bs;
296ab26458aSBarry Smith   } else {
297ab26458aSBarry Smith     stepval = (m-1)*bs;
298ab26458aSBarry Smith   }
299ab26458aSBarry Smith   for (i=0; i<m; i++) {
3005ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
30277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
303ab26458aSBarry Smith #endif
304ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
305ab26458aSBarry Smith       row = im[i] - rstart;
306ab26458aSBarry Smith       for (j=0; j<n; j++) {
30715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
309f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
31015b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
311f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31215b57d14SSatish Balay         } else { /* Here a copy is required */
313ab26458aSBarry Smith           if (roworiented) {
314ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
315ab26458aSBarry Smith           } else {
316ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
317abef11f7SSatish Balay           }
31847513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
31947513183SBarry Smith             for (jj=0; jj<bs; jj++) {
32030793edcSSatish Balay               *barray++  = *value++;
32147513183SBarry Smith             }
32247513183SBarry Smith           }
32330793edcSSatish Balay           barray -=bs2;
32415b57d14SSatish Balay         }
325abef11f7SSatish Balay 
326abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
327abef11f7SSatish Balay           col  = in[j] - cstart;
32897e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
329ab26458aSBarry Smith         }
3305ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3312515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
33277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
333ab26458aSBarry Smith #endif
334ab26458aSBarry Smith         else {
335ab26458aSBarry Smith           if (mat->was_assembled) {
336ab26458aSBarry Smith             if (!baij->colmap) {
337ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
338ab26458aSBarry Smith             }
339a5eb4965SSatish Balay 
3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
341aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
342b24ad042SBarry Smith             { PetscInt data;
3430f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
34429bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
345fa46199cSSatish Balay             }
34648e59246SSatish Balay #else
34729bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
348a5eb4965SSatish Balay #endif
34948e59246SSatish Balay #endif
350aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3510f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
352fa46199cSSatish Balay             col  = (col - 1)/bs;
35348e59246SSatish Balay #else
354a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35548e59246SSatish Balay #endif
356ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
357ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
358ab26458aSBarry Smith               col =  in[j];
359ab26458aSBarry Smith             }
360ab26458aSBarry Smith           }
361ab26458aSBarry Smith           else col = in[j];
36297e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
363ab26458aSBarry Smith         }
364ab26458aSBarry Smith       }
365d64ed03dSBarry Smith     } else {
366ab26458aSBarry Smith       if (!baij->donotstash) {
367ff2fd236SBarry Smith         if (roworiented) {
3686fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
369ff2fd236SBarry Smith         } else {
3706fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
371ff2fd236SBarry Smith         }
372abef11f7SSatish Balay       }
373ab26458aSBarry Smith     }
374ab26458aSBarry Smith   }
3753a40ed3dSBarry Smith   PetscFunctionReturn(0);
376ab26458aSBarry Smith }
3776fa18ffdSBarry Smith 
3780bdbc534SSatish Balay #define HASH_KEY 0.6180339887
379b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
380b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
381b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3824a2ae208SSatish Balay #undef __FUNCT__
38397e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38497e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3850bdbc534SSatish Balay {
3860bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
387273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
388dfbe8321SBarry Smith   PetscErrorCode ierr;
389b24ad042SBarry Smith   PetscInt       i,j,row,col;
390899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
391899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,Nbs=baij->Nbs;
392899cda47SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx;
393329f5518SBarry Smith   PetscReal      tmp;
3943eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3952515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
396b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3974a15367fSSatish Balay #endif
3980bdbc534SSatish Balay 
3990bdbc534SSatish Balay   PetscFunctionBegin;
4000bdbc534SSatish Balay 
4010bdbc534SSatish Balay   for (i=0; i<m; i++) {
4022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
40329bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
404899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
4050bdbc534SSatish Balay #endif
4060bdbc534SSatish Balay       row = im[i];
407c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4080bdbc534SSatish Balay       for (j=0; j<n; j++) {
4090bdbc534SSatish Balay         col = in[j];
4106fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
411b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
412c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
413c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4140bdbc534SSatish Balay 
415c2760754SSatish Balay 
416c2760754SSatish Balay         idx = h1;
4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
418187ce0cbSSatish Balay         insert_ct++;
419187ce0cbSSatish Balay         total_ct++;
420187ce0cbSSatish Balay         if (HT[idx] != key) {
421187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
422187ce0cbSSatish Balay           if (idx == size) {
423187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
424187ce0cbSSatish Balay             if (idx == h1) {
42577431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
426187ce0cbSSatish Balay             }
427187ce0cbSSatish Balay           }
428187ce0cbSSatish Balay         }
429187ce0cbSSatish Balay #else
430c2760754SSatish Balay         if (HT[idx] != key) {
431c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
432c2760754SSatish Balay           if (idx == size) {
433c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
434c2760754SSatish Balay             if (idx == h1) {
43577431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
436c2760754SSatish Balay             }
437c2760754SSatish Balay           }
438c2760754SSatish Balay         }
439187ce0cbSSatish Balay #endif
440c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
441c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
442c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4430bdbc534SSatish Balay       }
4440bdbc534SSatish Balay     } else {
4450bdbc534SSatish Balay       if (!baij->donotstash) {
446ff2fd236SBarry Smith         if (roworiented) {
4478798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
448ff2fd236SBarry Smith         } else {
4498798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
4500bdbc534SSatish Balay         }
4510bdbc534SSatish Balay       }
4520bdbc534SSatish Balay     }
4530bdbc534SSatish Balay   }
4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
455187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
456187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
457187ce0cbSSatish Balay #endif
4580bdbc534SSatish Balay   PetscFunctionReturn(0);
4590bdbc534SSatish Balay }
4600bdbc534SSatish Balay 
4614a2ae208SSatish Balay #undef __FUNCT__
46297e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46397e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4640bdbc534SSatish Balay {
4650bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
466273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
467dfbe8321SBarry Smith   PetscErrorCode    ierr;
468b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
469899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
470ab715e2cSSatish Balay   PetscInt          rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2,nbs2=n*bs2;
471b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
472329f5518SBarry Smith   PetscReal         tmp;
4733eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
474dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
476b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4774a15367fSSatish Balay #endif
4780bdbc534SSatish Balay 
479d0a41580SSatish Balay   PetscFunctionBegin;
480d0a41580SSatish Balay 
4810bdbc534SSatish Balay   if (roworiented) {
4820bdbc534SSatish Balay     stepval = (n-1)*bs;
4830bdbc534SSatish Balay   } else {
4840bdbc534SSatish Balay     stepval = (m-1)*bs;
4850bdbc534SSatish Balay   }
4860bdbc534SSatish Balay   for (i=0; i<m; i++) {
4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
48877431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
48977431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4900bdbc534SSatish Balay #endif
4910bdbc534SSatish Balay     row   = im[i];
492ab715e2cSSatish Balay     v_t   = v + i*nbs2;
493c2760754SSatish Balay     if (row >= rstart && row < rend) {
4940bdbc534SSatish Balay       for (j=0; j<n; j++) {
4950bdbc534SSatish Balay         col = in[j];
4960bdbc534SSatish Balay 
4970bdbc534SSatish Balay         /* Look up into the Hash Table */
498c2760754SSatish Balay         key = row*Nbs+col+1;
499c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5000bdbc534SSatish Balay 
501c2760754SSatish Balay         idx = h1;
5022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
503187ce0cbSSatish Balay         total_ct++;
504187ce0cbSSatish Balay         insert_ct++;
505187ce0cbSSatish Balay        if (HT[idx] != key) {
506187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
507187ce0cbSSatish Balay           if (idx == size) {
508187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
509187ce0cbSSatish Balay             if (idx == h1) {
51077431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
511187ce0cbSSatish Balay             }
512187ce0cbSSatish Balay           }
513187ce0cbSSatish Balay         }
514187ce0cbSSatish Balay #else
515c2760754SSatish Balay         if (HT[idx] != key) {
516c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
517c2760754SSatish Balay           if (idx == size) {
518c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
519c2760754SSatish Balay             if (idx == h1) {
52077431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
521c2760754SSatish Balay             }
522c2760754SSatish Balay           }
523c2760754SSatish Balay         }
524187ce0cbSSatish Balay #endif
525c2760754SSatish Balay         baij_a = HD[idx];
5260bdbc534SSatish Balay         if (roworiented) {
527c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
528187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
529187ce0cbSSatish Balay           value = v_t;
530187ce0cbSSatish Balay           v_t  += bs;
531fef45726SSatish Balay           if (addv == ADD_VALUES) {
532c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
533c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
534fef45726SSatish Balay                 baij_a[jj]  += *value++;
535b4cc0f5aSSatish Balay               }
536b4cc0f5aSSatish Balay             }
537fef45726SSatish Balay           } else {
538c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
539c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
540fef45726SSatish Balay                 baij_a[jj]  = *value++;
541fef45726SSatish Balay               }
542fef45726SSatish Balay             }
543fef45726SSatish Balay           }
5440bdbc534SSatish Balay         } else {
5450bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
546fef45726SSatish Balay           if (addv == ADD_VALUES) {
547b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5480bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
549fef45726SSatish Balay                 baij_a[jj]  += *value++;
550fef45726SSatish Balay               }
551fef45726SSatish Balay             }
552fef45726SSatish Balay           } else {
553fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
554fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
555fef45726SSatish Balay                 baij_a[jj]  = *value++;
556fef45726SSatish Balay               }
557b4cc0f5aSSatish Balay             }
5580bdbc534SSatish Balay           }
5590bdbc534SSatish Balay         }
5600bdbc534SSatish Balay       }
5610bdbc534SSatish Balay     } else {
5620bdbc534SSatish Balay       if (!baij->donotstash) {
5630bdbc534SSatish Balay         if (roworiented) {
5648798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5650bdbc534SSatish Balay         } else {
5668798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5670bdbc534SSatish Balay         }
5680bdbc534SSatish Balay       }
5690bdbc534SSatish Balay     }
5700bdbc534SSatish Balay   }
5712515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
572187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
573187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
574187ce0cbSSatish Balay #endif
5750bdbc534SSatish Balay   PetscFunctionReturn(0);
5760bdbc534SSatish Balay }
577133cdb44SSatish Balay 
5784a2ae208SSatish Balay #undef __FUNCT__
5794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
580b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
581d6de1c52SSatish Balay {
582d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5836849ba73SBarry Smith   PetscErrorCode ierr;
584899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
585899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
586d6de1c52SSatish Balay 
587133cdb44SSatish Balay   PetscFunctionBegin;
588d6de1c52SSatish Balay   for (i=0; i<m; i++) {
58997e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
590899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
591d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
592d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
593d6de1c52SSatish Balay       for (j=0; j<n; j++) {
59497e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
595899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
596d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
597d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59898dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
599d64ed03dSBarry Smith         } else {
600905e6a2fSBarry Smith           if (!baij->colmap) {
601905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
602905e6a2fSBarry Smith           }
603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6040f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
605fa46199cSSatish Balay           data --;
60648e59246SSatish Balay #else
60748e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60848e59246SSatish Balay #endif
60948e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
610d9d09a02SSatish Balay           else {
61148e59246SSatish Balay             col  = data + idxn[j]%bs;
61298dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
613d6de1c52SSatish Balay           }
614d6de1c52SSatish Balay         }
615d6de1c52SSatish Balay       }
616d64ed03dSBarry Smith     } else {
61729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
618d6de1c52SSatish Balay     }
619d6de1c52SSatish Balay   }
6203a40ed3dSBarry Smith  PetscFunctionReturn(0);
621d6de1c52SSatish Balay }
622d6de1c52SSatish Balay 
6234a2ae208SSatish Balay #undef __FUNCT__
6244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
625dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
626d6de1c52SSatish Balay {
627d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
628d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
629dfbe8321SBarry Smith   PetscErrorCode ierr;
630899cda47SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col;
631329f5518SBarry Smith   PetscReal      sum = 0.0;
6323eda8832SBarry Smith   MatScalar      *v;
633d6de1c52SSatish Balay 
634d64ed03dSBarry Smith   PetscFunctionBegin;
635d6de1c52SSatish Balay   if (baij->size == 1) {
636064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
637d6de1c52SSatish Balay   } else {
638d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
639d6de1c52SSatish Balay       v = amat->a;
6408a62d963SHong Zhang       nz = amat->nz*bs2;
6418a62d963SHong Zhang       for (i=0; i<nz; i++) {
642aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
643329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
644d6de1c52SSatish Balay #else
645d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
646d6de1c52SSatish Balay #endif
647d6de1c52SSatish Balay       }
648d6de1c52SSatish Balay       v = bmat->a;
6498a62d963SHong Zhang       nz = bmat->nz*bs2;
6508a62d963SHong Zhang       for (i=0; i<nz; i++) {
651aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
652329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
653d6de1c52SSatish Balay #else
654d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
655d6de1c52SSatish Balay #endif
656d6de1c52SSatish Balay       }
6577adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
658064f8208SBarry Smith       *nrm = sqrt(*nrm);
6598a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6608a62d963SHong Zhang       PetscReal *tmp,*tmp2;
661899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
662899cda47SBarry Smith       ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
663899cda47SBarry Smith       tmp2 = tmp + mat->cmap.N;
664899cda47SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
6658a62d963SHong Zhang       v = amat->a; jj = amat->j;
6668a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6678a62d963SHong Zhang         for (j=0; j<bs; j++){
6688a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6698a62d963SHong Zhang           for (row=0; row<bs; row++){
6708a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6718a62d963SHong Zhang           }
6728a62d963SHong Zhang         }
6738a62d963SHong Zhang         jj++;
6748a62d963SHong Zhang       }
6758a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6768a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6778a62d963SHong Zhang         for (j=0; j<bs; j++){
6788a62d963SHong Zhang           col = bs*garray[*jj] + j;
6798a62d963SHong Zhang           for (row=0; row<bs; row++){
6808a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6818a62d963SHong Zhang           }
6828a62d963SHong Zhang         }
6838a62d963SHong Zhang         jj++;
6848a62d963SHong Zhang       }
6857adad957SLisandro Dalcin       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6868a62d963SHong Zhang       *nrm = 0.0;
687899cda47SBarry Smith       for (j=0; j<mat->cmap.N; j++) {
6888a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6898a62d963SHong Zhang       }
6908a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
6918a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
692577dd1f9SKris Buschelman       PetscReal *sums;
693577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
6948a62d963SHong Zhang       sum = 0.0;
6958a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6968a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6978a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6988a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6998a62d963SHong Zhang         for (i=0; i<nz; i++) {
7008a62d963SHong Zhang           for (col=0; col<bs; col++){
7018a62d963SHong Zhang             for (row=0; row<bs; row++){
7028a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7038a62d963SHong Zhang             }
7048a62d963SHong Zhang           }
7058a62d963SHong Zhang         }
7068a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7078a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7088a62d963SHong Zhang         for (i=0; i<nz; i++) {
7098a62d963SHong Zhang           for (col=0; col<bs; col++){
7108a62d963SHong Zhang             for (row=0; row<bs; row++){
7118a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7128a62d963SHong Zhang             }
7138a62d963SHong Zhang           }
7148a62d963SHong Zhang         }
7158a62d963SHong Zhang         for (row=0; row<bs; row++){
7168a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7178a62d963SHong Zhang         }
7188a62d963SHong Zhang       }
7197adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
720577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
721d64ed03dSBarry Smith     } else {
72229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
723d6de1c52SSatish Balay     }
724d64ed03dSBarry Smith   }
7253a40ed3dSBarry Smith   PetscFunctionReturn(0);
726d6de1c52SSatish Balay }
72757b952d6SSatish Balay 
728fef45726SSatish Balay /*
729fef45726SSatish Balay   Creates the hash table, and sets the table
730fef45726SSatish Balay   This table is created only once.
731fef45726SSatish Balay   If new entried need to be added to the matrix
732fef45726SSatish Balay   then the hash table has to be destroyed and
733fef45726SSatish Balay   recreated.
734fef45726SSatish Balay */
7354a2ae208SSatish Balay #undef __FUNCT__
7364a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
737dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
738596b8d2eSBarry Smith {
739596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
740596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
741596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
742b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7436849ba73SBarry Smith   PetscErrorCode ierr;
744899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
745899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
746b24ad042SBarry Smith   PetscInt       *HT,key;
7473eda8832SBarry Smith   MatScalar      **HD;
748329f5518SBarry Smith   PetscReal      tmp;
7496cf91177SBarry Smith #if defined(PETSC_USE_INFO)
750b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7514a15367fSSatish Balay #endif
752fef45726SSatish Balay 
753d64ed03dSBarry Smith   PetscFunctionBegin;
754b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
7550bdbc534SSatish Balay   size = baij->ht_size;
756fef45726SSatish Balay 
7570bdbc534SSatish Balay   if (baij->ht) {
7580bdbc534SSatish Balay     PetscFunctionReturn(0);
759596b8d2eSBarry Smith   }
7600bdbc534SSatish Balay 
761fef45726SSatish Balay   /* Allocate Memory for Hash Table */
762b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
763b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
764b9e4cc15SSatish Balay   HD       = baij->hd;
765a07cd24cSSatish Balay   HT       = baij->ht;
766b9e4cc15SSatish Balay 
767b9e4cc15SSatish Balay 
768b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
7690bdbc534SSatish Balay 
770596b8d2eSBarry Smith 
771596b8d2eSBarry Smith   /* Loop Over A */
7720bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
773596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7740bdbc534SSatish Balay       row = i+rstart;
7750bdbc534SSatish Balay       col = aj[j]+cstart;
776596b8d2eSBarry Smith 
777187ce0cbSSatish Balay       key = row*Nbs + col + 1;
778c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7790bdbc534SSatish Balay       for (k=0; k<size; k++){
780958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
7810bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7820bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
783596b8d2eSBarry Smith           break;
7846cf91177SBarry Smith #if defined(PETSC_USE_INFO)
785187ce0cbSSatish Balay         } else {
786187ce0cbSSatish Balay           ct++;
787187ce0cbSSatish Balay #endif
788596b8d2eSBarry Smith         }
789187ce0cbSSatish Balay       }
7906cf91177SBarry Smith #if defined(PETSC_USE_INFO)
791187ce0cbSSatish Balay       if (k> max) max = k;
792187ce0cbSSatish Balay #endif
793596b8d2eSBarry Smith     }
794596b8d2eSBarry Smith   }
795596b8d2eSBarry Smith   /* Loop Over B */
7960bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
797596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7980bdbc534SSatish Balay       row = i+rstart;
7990bdbc534SSatish Balay       col = garray[bj[j]];
800187ce0cbSSatish Balay       key = row*Nbs + col + 1;
801c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8020bdbc534SSatish Balay       for (k=0; k<size; k++){
803958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8040bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8050bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
806596b8d2eSBarry Smith           break;
8076cf91177SBarry Smith #if defined(PETSC_USE_INFO)
808187ce0cbSSatish Balay         } else {
809187ce0cbSSatish Balay           ct++;
810187ce0cbSSatish Balay #endif
811596b8d2eSBarry Smith         }
812187ce0cbSSatish Balay       }
8136cf91177SBarry Smith #if defined(PETSC_USE_INFO)
814187ce0cbSSatish Balay       if (k> max) max = k;
815187ce0cbSSatish Balay #endif
816596b8d2eSBarry Smith     }
817596b8d2eSBarry Smith   }
818596b8d2eSBarry Smith 
819596b8d2eSBarry Smith   /* Print Summary */
8206cf91177SBarry Smith #if defined(PETSC_USE_INFO)
821c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
822596b8d2eSBarry Smith     if (HT[i]) {j++;}
823c38d4ed2SBarry Smith   }
8241e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
825187ce0cbSSatish Balay #endif
8263a40ed3dSBarry Smith   PetscFunctionReturn(0);
827596b8d2eSBarry Smith }
82857b952d6SSatish Balay 
8294a2ae208SSatish Balay #undef __FUNCT__
8304a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
831dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
832bbb85fb3SSatish Balay {
833bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
834dfbe8321SBarry Smith   PetscErrorCode ierr;
835b24ad042SBarry Smith   PetscInt       nstash,reallocs;
836bbb85fb3SSatish Balay   InsertMode     addv;
837bbb85fb3SSatish Balay 
838bbb85fb3SSatish Balay   PetscFunctionBegin;
839bbb85fb3SSatish Balay   if (baij->donotstash) {
840bbb85fb3SSatish Balay     PetscFunctionReturn(0);
841bbb85fb3SSatish Balay   }
842bbb85fb3SSatish Balay 
843bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8447adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
845bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
84629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
847bbb85fb3SSatish Balay   }
848bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
849bbb85fb3SSatish Balay 
8501e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
8511e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8528798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8531e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
85446680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8551e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
856bbb85fb3SSatish Balay   PetscFunctionReturn(0);
857bbb85fb3SSatish Balay }
858bbb85fb3SSatish Balay 
8594a2ae208SSatish Balay #undef __FUNCT__
8604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
861dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
862bbb85fb3SSatish Balay {
863bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
86491c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8656849ba73SBarry Smith   PetscErrorCode ierr;
866b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
867e44c0bd4SBarry Smith   PetscInt       *row,*col;
868e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8693eda8832SBarry Smith   MatScalar      *val;
870bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
871b24ad042SBarry Smith   PetscMPIInt    n;
872bbb85fb3SSatish Balay 
87391c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
874bbb85fb3SSatish Balay   PetscFunctionBegin;
875bbb85fb3SSatish Balay   if (!baij->donotstash) {
876a2d1c673SSatish Balay     while (1) {
8778798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
878a2d1c673SSatish Balay       if (!flg) break;
879a2d1c673SSatish Balay 
880bbb85fb3SSatish Balay       for (i=0; i<n;) {
881bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
882bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
883bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
884bbb85fb3SSatish Balay         else       ncols = n-i;
885bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
88697e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
887bbb85fb3SSatish Balay         i = j;
888bbb85fb3SSatish Balay       }
889bbb85fb3SSatish Balay     }
8908798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
891a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
892a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
893a2d1c673SSatish Balay        restore the original flags */
894a2d1c673SSatish Balay     r1 = baij->roworiented;
895a2d1c673SSatish Balay     r2 = a->roworiented;
89691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8977c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8987c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89991c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
900a2d1c673SSatish Balay     while (1) {
9018798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
902a2d1c673SSatish Balay       if (!flg) break;
903a2d1c673SSatish Balay 
904a2d1c673SSatish Balay       for (i=0; i<n;) {
905a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
906a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
907a2d1c673SSatish Balay         if (j < n) ncols = j-i;
908a2d1c673SSatish Balay         else       ncols = n-i;
90997e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
910a2d1c673SSatish Balay         i = j;
911a2d1c673SSatish Balay       }
912a2d1c673SSatish Balay     }
9138798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
914a2d1c673SSatish Balay     baij->roworiented = r1;
915a2d1c673SSatish Balay     a->roworiented    = r2;
91691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
917bbb85fb3SSatish Balay   }
918bbb85fb3SSatish Balay 
919bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
920bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
921bbb85fb3SSatish Balay 
922bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
923bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
924bbb85fb3SSatish Balay   /*
925bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
926bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
927bbb85fb3SSatish Balay   */
928bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9297adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
930bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
931bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
932bbb85fb3SSatish Balay     }
933bbb85fb3SSatish Balay   }
934bbb85fb3SSatish Balay 
935bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
936bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
937bbb85fb3SSatish Balay   }
93891c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
939bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
940bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
941bbb85fb3SSatish Balay 
9426cf91177SBarry Smith #if defined(PETSC_USE_INFO)
943bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9441e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
945bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
946bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
947bbb85fb3SSatish Balay   }
948bbb85fb3SSatish Balay #endif
949bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
950bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
951bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
952bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
953bbb85fb3SSatish Balay   }
954bbb85fb3SSatish Balay 
955606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
956606d414cSSatish Balay   baij->rowvalues = 0;
957bbb85fb3SSatish Balay   PetscFunctionReturn(0);
958bbb85fb3SSatish Balay }
95957b952d6SSatish Balay 
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9626849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
96357b952d6SSatish Balay {
96457b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
965dfbe8321SBarry Smith   PetscErrorCode    ierr;
966b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
967899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
96832077d6dSBarry Smith   PetscTruth        iascii,isdraw;
969b0a32e0cSBarry Smith   PetscViewer       sviewer;
970f3ef73ceSBarry Smith   PetscViewerFormat format;
97157b952d6SSatish Balay 
972d64ed03dSBarry Smith   PetscFunctionBegin;
97332077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
974fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
97532077d6dSBarry Smith   if (iascii) {
976b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
977456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9784e220ebcSLois Curfman McInnes       MatInfo info;
9797adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
980d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
98177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
982899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
983899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
984d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
98577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
986d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
98777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
988b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
98907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
99057b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9913a40ed3dSBarry Smith       PetscFunctionReturn(0);
992fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
99377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9943a40ed3dSBarry Smith       PetscFunctionReturn(0);
99504929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
99604929863SHong Zhang       PetscFunctionReturn(0);
99757b952d6SSatish Balay     }
99857b952d6SSatish Balay   }
99957b952d6SSatish Balay 
10000f5bd95cSBarry Smith   if (isdraw) {
1001b0a32e0cSBarry Smith     PetscDraw       draw;
100257b952d6SSatish Balay     PetscTruth isnull;
1003b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1004b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
100557b952d6SSatish Balay   }
100657b952d6SSatish Balay 
100757b952d6SSatish Balay   if (size == 1) {
10087adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
100957b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1010d64ed03dSBarry Smith   } else {
101157b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
101257b952d6SSatish Balay     Mat         A;
101357b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1014899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10153eda8832SBarry Smith     MatScalar   *a;
101657b952d6SSatish Balay 
1017f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1018f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10197adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
102057b952d6SSatish Balay     if (!rank) {
1021f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1022d64ed03dSBarry Smith     } else {
1023f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
102457b952d6SSatish Balay     }
1025f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1026899cda47SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
102752e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
102857b952d6SSatish Balay 
102957b952d6SSatish Balay     /* copy over the A part */
103057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
103157b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1032b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
103357b952d6SSatish Balay 
103457b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1035899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
103657b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
103757b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1038899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
103957b952d6SSatish Balay         for (k=0; k<bs; k++) {
104097e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1041cee3aa6bSSatish Balay           col++; a += bs;
104257b952d6SSatish Balay         }
104357b952d6SSatish Balay       }
104457b952d6SSatish Balay     }
104557b952d6SSatish Balay     /* copy over the B part */
104657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
104757b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
104857b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1049899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
105057b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
105157b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
105257b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
105357b952d6SSatish Balay         for (k=0; k<bs; k++) {
105497e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1055cee3aa6bSSatish Balay           col++; a += bs;
105657b952d6SSatish Balay         }
105757b952d6SSatish Balay       }
105857b952d6SSatish Balay     }
1059606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10606d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10616d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
106255843e3eSBarry Smith     /*
106355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1064b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
106555843e3eSBarry Smith     */
1066b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1067f14a1c24SBarry Smith     if (!rank) {
10687adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10696831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
107057b952d6SSatish Balay     }
1071b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
107257b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
107357b952d6SSatish Balay   }
10743a40ed3dSBarry Smith   PetscFunctionReturn(0);
107557b952d6SSatish Balay }
107657b952d6SSatish Balay 
10774a2ae208SSatish Balay #undef __FUNCT__
10784a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1079dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
108057b952d6SSatish Balay {
1081dfbe8321SBarry Smith   PetscErrorCode ierr;
108232077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
108357b952d6SSatish Balay 
1084d64ed03dSBarry Smith   PetscFunctionBegin;
108532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1086fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1087b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1088fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
108932077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10907b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10915cd90555SBarry Smith   } else {
109279a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
109357b952d6SSatish Balay   }
10943a40ed3dSBarry Smith   PetscFunctionReturn(0);
109557b952d6SSatish Balay }
109657b952d6SSatish Balay 
10974a2ae208SSatish Balay #undef __FUNCT__
10984a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1099dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
110079bdfe76SSatish Balay {
110179bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1102dfbe8321SBarry Smith   PetscErrorCode ierr;
110379bdfe76SSatish Balay 
1104d64ed03dSBarry Smith   PetscFunctionBegin;
1105aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1106899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
110779bdfe76SSatish Balay #endif
11088798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
11098798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
111079bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
111179bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1112aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11139c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
111448e59246SSatish Balay #else
111505b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
111648e59246SSatish Balay #endif
111705b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1118606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1119606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
112005b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
112105b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
112205b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
1123899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1124606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1125901853e0SKris Buschelman 
1126dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1128901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1129901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1130901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1131aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1132901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1133901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11343a40ed3dSBarry Smith   PetscFunctionReturn(0);
113579bdfe76SSatish Balay }
113679bdfe76SSatish Balay 
11374a2ae208SSatish Balay #undef __FUNCT__
11384a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1139dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1140cee3aa6bSSatish Balay {
1141cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1142dfbe8321SBarry Smith   PetscErrorCode ierr;
1143b24ad042SBarry Smith   PetscInt       nt;
1144cee3aa6bSSatish Balay 
1145d64ed03dSBarry Smith   PetscFunctionBegin;
1146e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1147899cda47SBarry Smith   if (nt != A->cmap.n) {
114829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
114947b4a8eaSLois Curfman McInnes   }
1150e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1151899cda47SBarry Smith   if (nt != A->rmap.n) {
115229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
115347b4a8eaSLois Curfman McInnes   }
1154ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1155f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1156ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1157f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11583a40ed3dSBarry Smith   PetscFunctionReturn(0);
1159cee3aa6bSSatish Balay }
1160cee3aa6bSSatish Balay 
11614a2ae208SSatish Balay #undef __FUNCT__
11624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1163dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1164cee3aa6bSSatish Balay {
1165cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1166dfbe8321SBarry Smith   PetscErrorCode ierr;
1167d64ed03dSBarry Smith 
1168d64ed03dSBarry Smith   PetscFunctionBegin;
1169ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1170f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1171ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1172f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11733a40ed3dSBarry Smith   PetscFunctionReturn(0);
1174cee3aa6bSSatish Balay }
1175cee3aa6bSSatish Balay 
11764a2ae208SSatish Balay #undef __FUNCT__
11774a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1178dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1179cee3aa6bSSatish Balay {
1180cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1181dfbe8321SBarry Smith   PetscErrorCode ierr;
1182a5ff213dSBarry Smith   PetscTruth     merged;
1183cee3aa6bSSatish Balay 
1184d64ed03dSBarry Smith   PetscFunctionBegin;
1185a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1186cee3aa6bSSatish Balay   /* do nondiagonal part */
11877c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1188a5ff213dSBarry Smith   if (!merged) {
1189cee3aa6bSSatish Balay     /* send it on its way */
1190ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1191cee3aa6bSSatish Balay     /* do local part */
11927c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1193cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1194a5ff213dSBarry Smith     /* inserted in yy until the next line */
1195ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1196a5ff213dSBarry Smith   } else {
1197a5ff213dSBarry Smith     /* do local part */
1198a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1199a5ff213dSBarry Smith     /* send it on its way */
1200ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1201a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1202ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1203a5ff213dSBarry Smith   }
12043a40ed3dSBarry Smith   PetscFunctionReturn(0);
1205cee3aa6bSSatish Balay }
1206cee3aa6bSSatish Balay 
12074a2ae208SSatish Balay #undef __FUNCT__
12084a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1209dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1210cee3aa6bSSatish Balay {
1211cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1212dfbe8321SBarry Smith   PetscErrorCode ierr;
1213cee3aa6bSSatish Balay 
1214d64ed03dSBarry Smith   PetscFunctionBegin;
1215cee3aa6bSSatish Balay   /* do nondiagonal part */
12167c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1217cee3aa6bSSatish Balay   /* send it on its way */
1218ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1219cee3aa6bSSatish Balay   /* do local part */
12207c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1221cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1222cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1223cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1224ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12253a40ed3dSBarry Smith   PetscFunctionReturn(0);
1226cee3aa6bSSatish Balay }
1227cee3aa6bSSatish Balay 
1228cee3aa6bSSatish Balay /*
1229cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1230cee3aa6bSSatish Balay    diagonal block
1231cee3aa6bSSatish Balay */
12324a2ae208SSatish Balay #undef __FUNCT__
12334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1234dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1235cee3aa6bSSatish Balay {
1236cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1237dfbe8321SBarry Smith   PetscErrorCode ierr;
1238d64ed03dSBarry Smith 
1239d64ed03dSBarry Smith   PetscFunctionBegin;
1240899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12413a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12423a40ed3dSBarry Smith   PetscFunctionReturn(0);
1243cee3aa6bSSatish Balay }
1244cee3aa6bSSatish Balay 
12454a2ae208SSatish Balay #undef __FUNCT__
12464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1247f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1248cee3aa6bSSatish Balay {
1249cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1250dfbe8321SBarry Smith   PetscErrorCode ierr;
1251d64ed03dSBarry Smith 
1252d64ed03dSBarry Smith   PetscFunctionBegin;
1253f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1254f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1256cee3aa6bSSatish Balay }
1257026e39d0SSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1260b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1261acdf5bf4SSatish Balay {
1262acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
126387828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12646849ba73SBarry Smith   PetscErrorCode ierr;
1265899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1266899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1267899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1268acdf5bf4SSatish Balay 
1269d64ed03dSBarry Smith   PetscFunctionBegin;
1270abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1271acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1272acdf5bf4SSatish Balay 
1273acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1274acdf5bf4SSatish Balay     /*
1275acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1276acdf5bf4SSatish Balay     */
1277acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1278b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1279bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1280acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1281acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1282acdf5bf4SSatish Balay     }
1283b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1284b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1285acdf5bf4SSatish Balay   }
1286acdf5bf4SSatish Balay 
128729bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1288d9d09a02SSatish Balay   lrow = row - brstart;
1289acdf5bf4SSatish Balay 
1290acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1291acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1292acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1293f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1294f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1295acdf5bf4SSatish Balay   nztot = nzA + nzB;
1296acdf5bf4SSatish Balay 
1297acdf5bf4SSatish Balay   cmap  = mat->garray;
1298acdf5bf4SSatish Balay   if (v  || idx) {
1299acdf5bf4SSatish Balay     if (nztot) {
1300acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1301b24ad042SBarry Smith       PetscInt imark = -1;
1302acdf5bf4SSatish Balay       if (v) {
1303acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1304acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1305d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1306acdf5bf4SSatish Balay           else break;
1307acdf5bf4SSatish Balay         }
1308acdf5bf4SSatish Balay         imark = i;
1309acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1310acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1311acdf5bf4SSatish Balay       }
1312acdf5bf4SSatish Balay       if (idx) {
1313acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1314acdf5bf4SSatish Balay         if (imark > -1) {
1315acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1316bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1317acdf5bf4SSatish Balay           }
1318acdf5bf4SSatish Balay         } else {
1319acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1320d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1321d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1322acdf5bf4SSatish Balay             else break;
1323acdf5bf4SSatish Balay           }
1324acdf5bf4SSatish Balay           imark = i;
1325acdf5bf4SSatish Balay         }
1326d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1327d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1328acdf5bf4SSatish Balay       }
1329d64ed03dSBarry Smith     } else {
1330d212a18eSSatish Balay       if (idx) *idx = 0;
1331d212a18eSSatish Balay       if (v)   *v   = 0;
1332d212a18eSSatish Balay     }
1333acdf5bf4SSatish Balay   }
1334acdf5bf4SSatish Balay   *nz = nztot;
1335f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1336f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13373a40ed3dSBarry Smith   PetscFunctionReturn(0);
1338acdf5bf4SSatish Balay }
1339acdf5bf4SSatish Balay 
13404a2ae208SSatish Balay #undef __FUNCT__
13414a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1342b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1343acdf5bf4SSatish Balay {
1344acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1345d64ed03dSBarry Smith 
1346d64ed03dSBarry Smith   PetscFunctionBegin;
1347abc0a331SBarry Smith   if (!baij->getrowactive) {
134829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1349acdf5bf4SSatish Balay   }
1350acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13513a40ed3dSBarry Smith   PetscFunctionReturn(0);
1352acdf5bf4SSatish Balay }
1353acdf5bf4SSatish Balay 
13544a2ae208SSatish Balay #undef __FUNCT__
13554a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1356dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
135758667388SSatish Balay {
135858667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1359dfbe8321SBarry Smith   PetscErrorCode ierr;
1360d64ed03dSBarry Smith 
1361d64ed03dSBarry Smith   PetscFunctionBegin;
136258667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
136358667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13643a40ed3dSBarry Smith   PetscFunctionReturn(0);
136558667388SSatish Balay }
13660ac07820SSatish Balay 
13674a2ae208SSatish Balay #undef __FUNCT__
13684a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1369dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13700ac07820SSatish Balay {
13714e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13724e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1373dfbe8321SBarry Smith   PetscErrorCode ierr;
1374329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13750ac07820SSatish Balay 
1376d64ed03dSBarry Smith   PetscFunctionBegin;
1377899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
13784e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13790e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1380de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13814e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13820e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1383de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13840ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13854e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13864e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13874e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13884e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13894e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13900ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13917adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13924e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13934e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13944e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13954e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13964e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13970ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13987adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13994e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14004e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14014e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14024e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14034e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1404d41123aaSBarry Smith   } else {
140577431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14060ac07820SSatish Balay   }
1407899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1408899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1409899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1410899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
14114e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14124e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14134e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14143a40ed3dSBarry Smith   PetscFunctionReturn(0);
14150ac07820SSatish Balay }
14160ac07820SSatish Balay 
14174a2ae208SSatish Balay #undef __FUNCT__
14184a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
14194e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
142058667388SSatish Balay {
142158667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1422dfbe8321SBarry Smith   PetscErrorCode ierr;
142358667388SSatish Balay 
1424d64ed03dSBarry Smith   PetscFunctionBegin;
142512c028f9SKris Buschelman   switch (op) {
1426512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
142712c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
142812c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
142912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14304e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14314e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
143212c028f9SKris Buschelman     break;
143312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14344e0d8c25SBarry Smith     a->roworiented = flg;
14354e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14364e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
143712c028f9SKris Buschelman     break;
14384e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1439290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
144012c028f9SKris Buschelman     break;
144112c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14424e0d8c25SBarry Smith     a->donotstash = flg;
144312c028f9SKris Buschelman     break;
144412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14454e0d8c25SBarry Smith     a->ht_flag = flg;
144612c028f9SKris Buschelman     break;
144777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
144877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14492188ac68SBarry Smith   case MAT_HERMITIAN:
14502188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14514e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
145277e54ba9SKris Buschelman     break;
145312c028f9SKris Buschelman   default:
1454ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1455d64ed03dSBarry Smith   }
14563a40ed3dSBarry Smith   PetscFunctionReturn(0);
145758667388SSatish Balay }
145858667388SSatish Balay 
14594a2ae208SSatish Balay #undef __FUNCT__
14604a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1461*fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14620ac07820SSatish Balay {
14630ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14640ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14650ac07820SSatish Balay   Mat            B;
1466dfbe8321SBarry Smith   PetscErrorCode ierr;
1467899cda47SBarry Smith   PetscInt       M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col;
1468899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,mbs=baij->mbs;
14693eda8832SBarry Smith   MatScalar      *a;
14700ac07820SSatish Balay 
1471d64ed03dSBarry Smith   PetscFunctionBegin;
1472*fc4dec0aSBarry Smith   if (*matout == A && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1473*fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
14747adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1475899cda47SBarry Smith     ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr);
14767adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1477899cda47SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1478*fc4dec0aSBarry Smith   } else {
1479*fc4dec0aSBarry Smith     B = *matout;
1480*fc4dec0aSBarry Smith   }
14810ac07820SSatish Balay 
14820ac07820SSatish Balay   /* copy over the A part */
14830ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14840ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1485b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14860ac07820SSatish Balay 
14870ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1488899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14890ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14900ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1491899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14920ac07820SSatish Balay       for (k=0; k<bs; k++) {
149397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14940ac07820SSatish Balay         col++; a += bs;
14950ac07820SSatish Balay       }
14960ac07820SSatish Balay     }
14970ac07820SSatish Balay   }
14980ac07820SSatish Balay   /* copy over the B part */
14990ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15000ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15010ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1502899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
15030ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
15040ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15050ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15060ac07820SSatish Balay       for (k=0; k<bs; k++) {
150797e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15080ac07820SSatish Balay         col++; a += bs;
15090ac07820SSatish Balay       }
15100ac07820SSatish Balay     }
15110ac07820SSatish Balay   }
1512606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15130ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15140ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15150ac07820SSatish Balay 
1516*fc4dec0aSBarry Smith   if (*matout != A) {
15170ac07820SSatish Balay     *matout = B;
15180ac07820SSatish Balay   } else {
1519273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
15200ac07820SSatish Balay   }
15213a40ed3dSBarry Smith   PetscFunctionReturn(0);
15220ac07820SSatish Balay }
15230e95ebc0SSatish Balay 
15244a2ae208SSatish Balay #undef __FUNCT__
15254a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1526dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15270e95ebc0SSatish Balay {
152836c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
152936c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1530dfbe8321SBarry Smith   PetscErrorCode ierr;
1531b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15320e95ebc0SSatish Balay 
1533d64ed03dSBarry Smith   PetscFunctionBegin;
153436c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
153536c4a09eSSatish Balay   if (rr) {
153636c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
153729bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
153836c4a09eSSatish Balay     /* Overlap communication with computation. */
1539ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
154036c4a09eSSatish Balay   }
15410e95ebc0SSatish Balay   if (ll) {
15420e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
154329bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1544a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15450e95ebc0SSatish Balay   }
154636c4a09eSSatish Balay   /* scale  the diagonal block */
154736c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
154836c4a09eSSatish Balay 
154936c4a09eSSatish Balay   if (rr) {
155036c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1551ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1552a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
155336c4a09eSSatish Balay   }
155436c4a09eSSatish Balay 
15553a40ed3dSBarry Smith   PetscFunctionReturn(0);
15560e95ebc0SSatish Balay }
15570e95ebc0SSatish Balay 
15584a2ae208SSatish Balay #undef __FUNCT__
15594a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1560f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15610ac07820SSatish Balay {
15620ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15636849ba73SBarry Smith   PetscErrorCode ierr;
1564b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1565899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
1566b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1567b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15687adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1569357c27ecSBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap.rstart;
15707adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15710ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15720ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15736543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15746543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15756543fbbaSBarry Smith #endif
15760ac07820SSatish Balay 
1577d64ed03dSBarry Smith   PetscFunctionBegin;
15780ac07820SSatish Balay   /*  first count number of contributors to each processor */
1579b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1580b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1581b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15826543fbbaSBarry Smith   j = 0;
15830ac07820SSatish Balay   for (i=0; i<N; i++) {
15846543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15856543fbbaSBarry Smith     lastidx = idx;
15866543fbbaSBarry Smith     for (; j<size; j++) {
1587357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15886543fbbaSBarry Smith         nprocs[2*j]++;
15896543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15906543fbbaSBarry Smith         owner[i] = j;
15916543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15926543fbbaSBarry Smith         found = PETSC_TRUE;
15936543fbbaSBarry Smith #endif
15946543fbbaSBarry Smith         break;
15950ac07820SSatish Balay       }
15960ac07820SSatish Balay     }
15976543fbbaSBarry Smith #if defined(PETSC_DEBUG)
159829bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15996543fbbaSBarry Smith     found = PETSC_FALSE;
16006543fbbaSBarry Smith #endif
16010ac07820SSatish Balay   }
1602c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
16030ac07820SSatish Balay 
16040ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1605c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
16060ac07820SSatish Balay 
16070ac07820SSatish Balay   /* post receives:   */
1608b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1609b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
16100ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1611b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16120ac07820SSatish Balay   }
16130ac07820SSatish Balay 
16140ac07820SSatish Balay   /* do sends:
16150ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16160ac07820SSatish Balay      the ith processor
16170ac07820SSatish Balay   */
1618b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1619b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1620b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16210ac07820SSatish Balay   starts[0]  = 0;
1622c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16230ac07820SSatish Balay   for (i=0; i<N; i++) {
16240ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16250ac07820SSatish Balay   }
16260ac07820SSatish Balay 
16270ac07820SSatish Balay   starts[0] = 0;
1628c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16290ac07820SSatish Balay   count = 0;
16300ac07820SSatish Balay   for (i=0; i<size; i++) {
1631c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1632b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16330ac07820SSatish Balay     }
16340ac07820SSatish Balay   }
1635606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16360ac07820SSatish Balay 
1637357c27ecSBarry Smith   base = owners[rank];
16380ac07820SSatish Balay 
16390ac07820SSatish Balay   /*  wait on receives */
1640b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
16410ac07820SSatish Balay   source = lens + nrecvs;
16420ac07820SSatish Balay   count  = nrecvs; slen = 0;
16430ac07820SSatish Balay   while (count) {
1644ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16450ac07820SSatish Balay     /* unpack receives into our local space */
1646b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16470ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16480ac07820SSatish Balay     lens[imdex]    = n;
16490ac07820SSatish Balay     slen          += n;
16500ac07820SSatish Balay     count--;
16510ac07820SSatish Balay   }
1652606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16530ac07820SSatish Balay 
16540ac07820SSatish Balay   /* move the data into the send scatter */
1655b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16560ac07820SSatish Balay   count = 0;
16570ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16580ac07820SSatish Balay     values = rvalues + i*nmax;
16590ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16600ac07820SSatish Balay       lrows[count++] = values[j] - base;
16610ac07820SSatish Balay     }
16620ac07820SSatish Balay   }
1663606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1664606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1665606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1666606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16670ac07820SSatish Balay 
16680ac07820SSatish Balay   /* actually zap the local rows */
166972dacd9aSBarry Smith   /*
167072dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1671a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
167272dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
167372dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
167472dacd9aSBarry Smith 
1675f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
167672dacd9aSBarry Smith   */
16779c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1678f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1679899cda47SBarry Smith   if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) {
1680f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1681f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1682f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1683fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
168429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1685512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
16866525c446SSatish Balay     }
1687a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1688a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1689f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1690a07cd24cSSatish Balay     }
1691a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1692a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16939c957beeSSatish Balay   } else {
1694f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1695a07cd24cSSatish Balay   }
16969c957beeSSatish Balay 
1697606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1698a07cd24cSSatish Balay 
16990ac07820SSatish Balay   /* wait on sends */
17000ac07820SSatish Balay   if (nsends) {
170182502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1702ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1703606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
17040ac07820SSatish Balay   }
1705606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1706606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
17070ac07820SSatish Balay 
17083a40ed3dSBarry Smith   PetscFunctionReturn(0);
17090ac07820SSatish Balay }
171072dacd9aSBarry Smith 
17114a2ae208SSatish Balay #undef __FUNCT__
17124a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1713dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1714bb5a7306SBarry Smith {
1715bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1716dfbe8321SBarry Smith   PetscErrorCode ierr;
1717d64ed03dSBarry Smith 
1718d64ed03dSBarry Smith   PetscFunctionBegin;
1719bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17203a40ed3dSBarry Smith   PetscFunctionReturn(0);
1721bb5a7306SBarry Smith }
1722bb5a7306SBarry Smith 
17236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17240ac07820SSatish Balay 
17254a2ae208SSatish Balay #undef __FUNCT__
17264a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1727dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17287fc3c18eSBarry Smith {
17297fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17307fc3c18eSBarry Smith   Mat            a,b,c,d;
17317fc3c18eSBarry Smith   PetscTruth     flg;
1732dfbe8321SBarry Smith   PetscErrorCode ierr;
17337fc3c18eSBarry Smith 
17347fc3c18eSBarry Smith   PetscFunctionBegin;
17357fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17367fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17377fc3c18eSBarry Smith 
17387fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1739abc0a331SBarry Smith   if (flg) {
17407fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17417fc3c18eSBarry Smith   }
17427adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17437fc3c18eSBarry Smith   PetscFunctionReturn(0);
17447fc3c18eSBarry Smith }
17457fc3c18eSBarry Smith 
17463c896bc6SHong Zhang #undef __FUNCT__
17473c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17483c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17493c896bc6SHong Zhang {
17503c896bc6SHong Zhang   PetscErrorCode ierr;
17513c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17523c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17533c896bc6SHong Zhang 
17543c896bc6SHong Zhang   PetscFunctionBegin;
17553c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17563c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17573c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17583c896bc6SHong Zhang   } else {
17593c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17603c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17613c896bc6SHong Zhang   }
17623c896bc6SHong Zhang   PetscFunctionReturn(0);
17633c896bc6SHong Zhang }
1764273d9f13SBarry Smith 
17654a2ae208SSatish Balay #undef __FUNCT__
17664a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1767dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1768273d9f13SBarry Smith {
1769dfbe8321SBarry Smith   PetscErrorCode ierr;
1770273d9f13SBarry Smith 
1771273d9f13SBarry Smith   PetscFunctionBegin;
17727edd0491SSatish Balay   ierr =  MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1773273d9f13SBarry Smith   PetscFunctionReturn(0);
1774273d9f13SBarry Smith }
1775273d9f13SBarry Smith 
17764fe895cdSHong Zhang #include "petscblaslapack.h"
17774fe895cdSHong Zhang #undef __FUNCT__
17784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17804fe895cdSHong Zhang {
17814fe895cdSHong Zhang   PetscErrorCode ierr;
17824fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17834fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17844fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17854fe895cdSHong Zhang 
17864fe895cdSHong Zhang   PetscFunctionBegin;
17874fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17884fe895cdSHong Zhang     PetscScalar alpha = a;
17894fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17904fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17910805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17934fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17944fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17950805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17964fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17974fe895cdSHong Zhang   } else {
17984fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17994fe895cdSHong Zhang   }
18004fe895cdSHong Zhang   PetscFunctionReturn(0);
18014fe895cdSHong Zhang }
18024fe895cdSHong Zhang 
180399cafbc1SBarry Smith #undef __FUNCT__
180499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
180599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
180699cafbc1SBarry Smith {
180799cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
180899cafbc1SBarry Smith   PetscErrorCode ierr;
180999cafbc1SBarry Smith 
181099cafbc1SBarry Smith   PetscFunctionBegin;
181199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
181299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
181399cafbc1SBarry Smith   PetscFunctionReturn(0);
181499cafbc1SBarry Smith }
181599cafbc1SBarry Smith 
181699cafbc1SBarry Smith #undef __FUNCT__
181799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
181899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
181999cafbc1SBarry Smith {
182099cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
182199cafbc1SBarry Smith   PetscErrorCode ierr;
182299cafbc1SBarry Smith 
182399cafbc1SBarry Smith   PetscFunctionBegin;
182499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
182599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
182699cafbc1SBarry Smith   PetscFunctionReturn(0);
182799cafbc1SBarry Smith }
182899cafbc1SBarry Smith 
182979bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1830cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1831cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1832cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1833cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1834cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
183597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
18367c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
18377c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1838cc2dc46cSBarry Smith        0,
1839cc2dc46cSBarry Smith        0,
1840cc2dc46cSBarry Smith        0,
184197304618SKris Buschelman /*10*/ 0,
1842cc2dc46cSBarry Smith        0,
1843cc2dc46cSBarry Smith        0,
1844cc2dc46cSBarry Smith        0,
1845cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
184697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
18477fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
1848cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
1849cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
1850cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
185197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
1852cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
1853cc2dc46cSBarry Smith        0,
1854cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
1855cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
185697304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
1857cc2dc46cSBarry Smith        0,
1858cc2dc46cSBarry Smith        0,
1859cc2dc46cSBarry Smith        0,
1860cc2dc46cSBarry Smith        0,
186197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
1862273d9f13SBarry Smith        0,
1863cc2dc46cSBarry Smith        0,
1864cc2dc46cSBarry Smith        0,
1865cc2dc46cSBarry Smith        0,
186697304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
1867cc2dc46cSBarry Smith        0,
1868cc2dc46cSBarry Smith        0,
1869cc2dc46cSBarry Smith        0,
1870cc2dc46cSBarry Smith        0,
18714fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ,
1872cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
1873cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
1874cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
18753c896bc6SHong Zhang        MatCopy_MPIBAIJ,
18768c07d4e3SBarry Smith /*45*/ 0,
1877cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
1878cc2dc46cSBarry Smith        0,
1879cc2dc46cSBarry Smith        0,
1880cc2dc46cSBarry Smith        0,
1881521d7252SBarry Smith /*50*/ 0,
1882cc2dc46cSBarry Smith        0,
1883cc2dc46cSBarry Smith        0,
1884cc2dc46cSBarry Smith        0,
1885cc2dc46cSBarry Smith        0,
188697304618SKris Buschelman /*55*/ 0,
1887cc2dc46cSBarry Smith        0,
1888cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
1889cc2dc46cSBarry Smith        0,
1890cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
189197304618SKris Buschelman /*60*/ 0,
1892f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
1893f14a1c24SBarry Smith        MatView_MPIBAIJ,
1894357abbc8SBarry Smith        0,
18957843d17aSBarry Smith        0,
189697304618SKris Buschelman /*65*/ 0,
18977843d17aSBarry Smith        0,
18987843d17aSBarry Smith        0,
18997843d17aSBarry Smith        0,
19007843d17aSBarry Smith        0,
1901985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPIBAIJ,
19027843d17aSBarry Smith        0,
190397304618SKris Buschelman        0,
190497304618SKris Buschelman        0,
190597304618SKris Buschelman        0,
190697304618SKris Buschelman /*75*/ 0,
190797304618SKris Buschelman        0,
190897304618SKris Buschelman        0,
190997304618SKris Buschelman        0,
191097304618SKris Buschelman        0,
191197304618SKris Buschelman /*80*/ 0,
191297304618SKris Buschelman        0,
191397304618SKris Buschelman        0,
191497304618SKris Buschelman        0,
1915865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
1916865e5f61SKris Buschelman /*85*/ 0,
1917865e5f61SKris Buschelman        0,
1918865e5f61SKris Buschelman        0,
1919865e5f61SKris Buschelman        0,
1920865e5f61SKris Buschelman        0,
1921865e5f61SKris Buschelman /*90*/ 0,
1922865e5f61SKris Buschelman        0,
1923865e5f61SKris Buschelman        0,
1924865e5f61SKris Buschelman        0,
1925865e5f61SKris Buschelman        0,
1926865e5f61SKris Buschelman /*95*/ 0,
1927865e5f61SKris Buschelman        0,
1928865e5f61SKris Buschelman        0,
192999cafbc1SBarry Smith        0,
193099cafbc1SBarry Smith        0,
193199cafbc1SBarry Smith /*100*/0,
193299cafbc1SBarry Smith        0,
193399cafbc1SBarry Smith        0,
193499cafbc1SBarry Smith        0,
193599cafbc1SBarry Smith        0,
193699cafbc1SBarry Smith /*105*/0,
193799cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
193899cafbc1SBarry Smith        MatImaginaryPart_MPIBAIJ};
193979bdfe76SSatish Balay 
19405ef9f2a5SBarry Smith 
1941e18c124aSSatish Balay EXTERN_C_BEGIN
19424a2ae208SSatish Balay #undef __FUNCT__
19434a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
1944be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
19455ef9f2a5SBarry Smith {
19465ef9f2a5SBarry Smith   PetscFunctionBegin;
19475ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
19485ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
19495ef9f2a5SBarry Smith   PetscFunctionReturn(0);
19505ef9f2a5SBarry Smith }
1951e18c124aSSatish Balay EXTERN_C_END
195279bdfe76SSatish Balay 
1953273d9f13SBarry Smith EXTERN_C_BEGIN
1954f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
1955d94109b8SHong Zhang EXTERN_C_END
1956d94109b8SHong Zhang 
1957aac34f13SBarry Smith #undef __FUNCT__
1958aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
1959b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[])
1960aac34f13SBarry Smith {
1961899cda47SBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)B->data;
1962899cda47SBarry Smith   PetscInt       m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d;
1963899cda47SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii;
1964aac34f13SBarry Smith   const PetscInt *JJ;
1965aac34f13SBarry Smith   PetscScalar    *values;
1966aac34f13SBarry Smith   PetscErrorCode ierr;
1967aac34f13SBarry Smith 
1968aac34f13SBarry Smith   PetscFunctionBegin;
1969aac34f13SBarry Smith #if defined(PETSC_OPT_g)
1970b7940d39SSatish Balay   if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]);
1971aac34f13SBarry Smith #endif
1972aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
1973aac34f13SBarry Smith   o_nnz = d_nnz + m;
1974aac34f13SBarry Smith 
1975aac34f13SBarry Smith   for (i=0; i<m; i++) {
1976b7940d39SSatish Balay     nnz     = Ii[i+1]- Ii[i];
1977b7940d39SSatish Balay     JJ      = J + Ii[i];
1978aac34f13SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
1979aac34f13SBarry Smith #if defined(PETSC_OPT_g)
1980aac34f13SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
1981aac34f13SBarry Smith #endif
1982aac34f13SBarry Smith     for (j=0; j<nnz; j++) {
1983aac34f13SBarry Smith       if (*JJ >= cstart) break;
1984aac34f13SBarry Smith       JJ++;
1985aac34f13SBarry Smith     }
1986aac34f13SBarry Smith     d = 0;
1987aac34f13SBarry Smith     for (; j<nnz; j++) {
1988aac34f13SBarry Smith       if (*JJ++ >= cend) break;
1989aac34f13SBarry Smith       d++;
1990aac34f13SBarry Smith     }
1991aac34f13SBarry Smith     d_nnz[i] = d;
1992aac34f13SBarry Smith     o_nnz[i] = nnz - d;
1993aac34f13SBarry Smith   }
1994aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1995aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
1996aac34f13SBarry Smith 
1997aac34f13SBarry Smith   if (v) values = (PetscScalar*)v;
1998aac34f13SBarry Smith   else {
1999aac34f13SBarry Smith     ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2000aac34f13SBarry Smith     ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2001aac34f13SBarry Smith   }
2002aac34f13SBarry Smith 
2003aac34f13SBarry Smith   for (i=0; i<m; i++) {
2004aac34f13SBarry Smith     ii   = i + rstart;
2005b7940d39SSatish Balay     nnz  = Ii[i+1]- Ii[i];
2006b7940d39SSatish Balay     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr);
2007aac34f13SBarry Smith   }
2008aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2009aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2010aac34f13SBarry Smith 
2011aac34f13SBarry Smith   if (!v) {
2012aac34f13SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2013aac34f13SBarry Smith   }
2014aac34f13SBarry Smith   PetscFunctionReturn(0);
2015aac34f13SBarry Smith }
2016aac34f13SBarry Smith 
2017aac34f13SBarry Smith #undef __FUNCT__
2018aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2019aac34f13SBarry Smith /*@C
2020aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2021aac34f13SBarry Smith    (the default parallel PETSc format).
2022aac34f13SBarry Smith 
2023aac34f13SBarry Smith    Collective on MPI_Comm
2024aac34f13SBarry Smith 
2025aac34f13SBarry Smith    Input Parameters:
2026aac34f13SBarry Smith +  A - the matrix
2027aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2028aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2029aac34f13SBarry Smith -  v - optional values in the matrix
2030aac34f13SBarry Smith 
2031aac34f13SBarry Smith    Level: developer
2032aac34f13SBarry Smith 
2033aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2034aac34f13SBarry Smith 
2035aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2036aac34f13SBarry Smith @*/
2037be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2038aac34f13SBarry Smith {
2039aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2040aac34f13SBarry Smith 
2041aac34f13SBarry Smith   PetscFunctionBegin;
2042aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2043aac34f13SBarry Smith   if (f) {
2044aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2045aac34f13SBarry Smith   }
2046aac34f13SBarry Smith   PetscFunctionReturn(0);
2047aac34f13SBarry Smith }
2048aac34f13SBarry Smith 
2049d94109b8SHong Zhang EXTERN_C_BEGIN
20504a2ae208SSatish Balay #undef __FUNCT__
2051a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2052be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2053a23d5eceSKris Buschelman {
2054a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2055dfbe8321SBarry Smith   PetscErrorCode ierr;
2056b24ad042SBarry Smith   PetscInt       i;
2057a23d5eceSKris Buschelman 
2058a23d5eceSKris Buschelman   PetscFunctionBegin;
2059a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
20607adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
20618c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
20628c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2063a23d5eceSKris Buschelman 
2064a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2065a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2066a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
206777431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
206877431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2069899cda47SBarry Smith 
2070899cda47SBarry Smith   B->rmap.bs  = bs;
2071899cda47SBarry Smith   B->cmap.bs  = bs;
20726148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
20736148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
2074899cda47SBarry Smith 
2075a23d5eceSKris Buschelman   if (d_nnz) {
2076899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
207777431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2078a23d5eceSKris Buschelman     }
2079a23d5eceSKris Buschelman   }
2080a23d5eceSKris Buschelman   if (o_nnz) {
2081899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
208277431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2083a23d5eceSKris Buschelman     }
2084a23d5eceSKris Buschelman   }
2085a23d5eceSKris Buschelman 
2086a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2087a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2088899cda47SBarry Smith   b->mbs = B->rmap.n/bs;
2089899cda47SBarry Smith   b->nbs = B->cmap.n/bs;
2090899cda47SBarry Smith   b->Mbs = B->rmap.N/bs;
2091899cda47SBarry Smith   b->Nbs = B->cmap.N/bs;
2092a23d5eceSKris Buschelman 
2093a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2094899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
2095a23d5eceSKris Buschelman   }
2096899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
2097899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
2098899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
2099899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
2100a23d5eceSKris Buschelman 
2101f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2102899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
21039c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2104c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
210552e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2106f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2107899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
21089c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2109c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
211052e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2111c60e587dSKris Buschelman 
21127adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2113a23d5eceSKris Buschelman 
2114a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2115a23d5eceSKris Buschelman }
2116a23d5eceSKris Buschelman EXTERN_C_END
2117a23d5eceSKris Buschelman 
2118a23d5eceSKris Buschelman EXTERN_C_BEGIN
2119be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2120be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
212192b32695SKris Buschelman EXTERN_C_END
21225bf65638SKris Buschelman 
21230bad9183SKris Buschelman /*MC
2124fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
21250bad9183SKris Buschelman 
21260bad9183SKris Buschelman    Options Database Keys:
21278c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
21288c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
21298c07d4e3SBarry Smith - -mat_use_hash_table <fact>
21300bad9183SKris Buschelman 
21310bad9183SKris Buschelman   Level: beginner
21320bad9183SKris Buschelman 
21330bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
21340bad9183SKris Buschelman M*/
21350bad9183SKris Buschelman 
213692b32695SKris Buschelman EXTERN_C_BEGIN
2137a23d5eceSKris Buschelman #undef __FUNCT__
21384a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2139be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2140273d9f13SBarry Smith {
2141273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2142dfbe8321SBarry Smith   PetscErrorCode ierr;
2143273d9f13SBarry Smith   PetscTruth     flg;
2144273d9f13SBarry Smith 
2145273d9f13SBarry Smith   PetscFunctionBegin;
214638f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
214782502324SSatish Balay   B->data = (void*)b;
214882502324SSatish Balay 
2149085a36d4SBarry Smith 
2150273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2151273d9f13SBarry Smith   B->mapping    = 0;
2152273d9f13SBarry Smith   B->factor     = 0;
2153273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2154273d9f13SBarry Smith 
2155273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
21567adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
21577adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2158273d9f13SBarry Smith 
2159273d9f13SBarry Smith   /* build local table of row and column ownerships */
2160899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2161273d9f13SBarry Smith 
2162273d9f13SBarry Smith   /* build cache for off array entries formed */
21637adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2164273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2165273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2166273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2167273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2168273d9f13SBarry Smith 
2169273d9f13SBarry Smith   /* stuff used in block assembly */
2170273d9f13SBarry Smith   b->barray       = 0;
2171273d9f13SBarry Smith 
2172273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2173273d9f13SBarry Smith   b->lvec         = 0;
2174273d9f13SBarry Smith   b->Mvctx        = 0;
2175273d9f13SBarry Smith 
2176273d9f13SBarry Smith   /* stuff for MatGetRow() */
2177273d9f13SBarry Smith   b->rowindices   = 0;
2178273d9f13SBarry Smith   b->rowvalues    = 0;
2179273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2180273d9f13SBarry Smith 
2181273d9f13SBarry Smith   /* hash table stuff */
2182273d9f13SBarry Smith   b->ht           = 0;
2183273d9f13SBarry Smith   b->hd           = 0;
2184273d9f13SBarry Smith   b->ht_size      = 0;
2185273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2186273d9f13SBarry Smith   b->ht_fact      = 0;
2187273d9f13SBarry Smith   b->ht_total_ct  = 0;
2188273d9f13SBarry Smith   b->ht_insert_ct = 0;
2189273d9f13SBarry Smith 
21907adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
21918c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2192273d9f13SBarry Smith     if (flg) {
2193f6275e2eSBarry Smith       PetscReal fact = 1.39;
21944e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
21958c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2196273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2197273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
21981e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2199273d9f13SBarry Smith     }
22008c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
22018c07d4e3SBarry Smith 
2202273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2203273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2204273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2205273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2206273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2207273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2208273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2209273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2210273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2211a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2212a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2213a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2214aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
221544ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
2216aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
221792b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
221892b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
221992b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
22205bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
22215bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
22225bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
222317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
2224273d9f13SBarry Smith   PetscFunctionReturn(0);
2225273d9f13SBarry Smith }
2226273d9f13SBarry Smith EXTERN_C_END
2227273d9f13SBarry Smith 
2228209238afSKris Buschelman /*MC
2229002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2230209238afSKris Buschelman 
2231209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2232209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2233209238afSKris Buschelman 
2234209238afSKris Buschelman    Options Database Keys:
2235209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2236209238afSKris Buschelman 
2237209238afSKris Buschelman   Level: beginner
2238209238afSKris Buschelman 
2239aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2240209238afSKris Buschelman M*/
2241209238afSKris Buschelman 
2242209238afSKris Buschelman EXTERN_C_BEGIN
2243209238afSKris Buschelman #undef __FUNCT__
2244209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2245be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2246dfbe8321SBarry Smith {
22476849ba73SBarry Smith   PetscErrorCode ierr;
2248b24ad042SBarry Smith   PetscMPIInt    size;
2249209238afSKris Buschelman 
2250209238afSKris Buschelman   PetscFunctionBegin;
22517adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2252209238afSKris Buschelman   if (size == 1) {
2253209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2254209238afSKris Buschelman   } else {
2255209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2256209238afSKris Buschelman   }
2257209238afSKris Buschelman   PetscFunctionReturn(0);
2258209238afSKris Buschelman }
2259209238afSKris Buschelman EXTERN_C_END
2260209238afSKris Buschelman 
22614a2ae208SSatish Balay #undef __FUNCT__
22624a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2263273d9f13SBarry Smith /*@C
2264aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2265273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2266273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2267273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2268273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2269273d9f13SBarry Smith 
2270273d9f13SBarry Smith    Collective on Mat
2271273d9f13SBarry Smith 
2272273d9f13SBarry Smith    Input Parameters:
2273273d9f13SBarry Smith +  A - the matrix
2274273d9f13SBarry Smith .  bs   - size of blockk
2275273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2276273d9f13SBarry Smith            submatrix  (same for all local rows)
2277273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2278273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2279273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2280273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2281273d9f13SBarry Smith            submatrix (same for all local rows).
2282273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2283273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2284273d9f13SBarry Smith            each block row) or PETSC_NULL.
2285273d9f13SBarry Smith 
228649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2287273d9f13SBarry Smith 
2288273d9f13SBarry Smith    Options Database Keys:
22898c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
22908c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
2291273d9f13SBarry Smith 
2292273d9f13SBarry Smith    Notes:
2293273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2294273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2295273d9f13SBarry Smith 
2296273d9f13SBarry Smith    Storage Information:
2297273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2298273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2299273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2300273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2301273d9f13SBarry Smith 
2302273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2303273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2304273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2305273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2306273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2307273d9f13SBarry Smith 
2308273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2309273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2310273d9f13SBarry Smith 
2311273d9f13SBarry Smith .vb
2312273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2313273d9f13SBarry Smith           -------------------
2314273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2315273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2316273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2317273d9f13SBarry Smith           -------------------
2318273d9f13SBarry Smith .ve
2319273d9f13SBarry Smith 
2320273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2321273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2322273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2323273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2324273d9f13SBarry Smith 
2325273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2326273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2327273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2328273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2329273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2330273d9f13SBarry Smith    matrices.
2331273d9f13SBarry Smith 
2332aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2333aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2334aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2335aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2336aa95bbe8SBarry Smith 
2337273d9f13SBarry Smith    Level: intermediate
2338273d9f13SBarry Smith 
2339273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2340273d9f13SBarry Smith 
2341aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2342273d9f13SBarry Smith @*/
2343be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2344273d9f13SBarry Smith {
2345b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2346273d9f13SBarry Smith 
2347273d9f13SBarry Smith   PetscFunctionBegin;
2348a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2349a23d5eceSKris Buschelman   if (f) {
2350a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2351273d9f13SBarry Smith   }
2352273d9f13SBarry Smith   PetscFunctionReturn(0);
2353273d9f13SBarry Smith }
2354273d9f13SBarry Smith 
23554a2ae208SSatish Balay #undef __FUNCT__
23564a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
235779bdfe76SSatish Balay /*@C
235879bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
235979bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
236079bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
236179bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
236279bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
236379bdfe76SSatish Balay 
2364db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2365db81eaa0SLois Curfman McInnes 
236679bdfe76SSatish Balay    Input Parameters:
2367db81eaa0SLois Curfman McInnes +  comm - MPI communicator
236879bdfe76SSatish Balay .  bs   - size of blockk
236979bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
237092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
237192e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
237292e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
237392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
237492e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2375be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2376be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
237747a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
237879bdfe76SSatish Balay            submatrix  (same for all local rows)
237947a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
238092e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2381db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
238247a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
238379bdfe76SSatish Balay            submatrix (same for all local rows).
238447a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
238592e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
238692e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
238779bdfe76SSatish Balay 
238879bdfe76SSatish Balay    Output Parameter:
238979bdfe76SSatish Balay .  A - the matrix
239079bdfe76SSatish Balay 
2391db81eaa0SLois Curfman McInnes    Options Database Keys:
23928c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
23938c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
23943ffaccefSLois Curfman McInnes 
2395175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2396175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
2397175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
2398175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2399175b88e8SBarry Smith 
2400b259b22eSLois Curfman McInnes    Notes:
240149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
240249a6f317SBarry Smith 
240347a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
240447a75d0bSBarry Smith 
240579bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
240679bdfe76SSatish Balay    (possibly both).
240779bdfe76SSatish Balay 
2408be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2409be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2410be79a94dSBarry Smith 
241179bdfe76SSatish Balay    Storage Information:
241279bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
241379bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
241479bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
241579bdfe76SSatish Balay    local matrix (a rectangular submatrix).
241679bdfe76SSatish Balay 
241779bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
241879bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
241979bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
242079bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
242179bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
242279bdfe76SSatish Balay 
242379bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
242479bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
242579bdfe76SSatish Balay 
2426db81eaa0SLois Curfman McInnes .vb
2427db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2428db81eaa0SLois Curfman McInnes           -------------------
2429db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2430db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2431db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2432db81eaa0SLois Curfman McInnes           -------------------
2433db81eaa0SLois Curfman McInnes .ve
243479bdfe76SSatish Balay 
243579bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
243679bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
243779bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
243857b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
243979bdfe76SSatish Balay 
2440d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2441d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
244279bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
244392e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
244492e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
24456da5968aSLois Curfman McInnes    matrices.
244679bdfe76SSatish Balay 
2447027ccd11SLois Curfman McInnes    Level: intermediate
2448027ccd11SLois Curfman McInnes 
244992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
245079bdfe76SSatish Balay 
2451aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
245279bdfe76SSatish Balay @*/
2453be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
245479bdfe76SSatish Balay {
24556849ba73SBarry Smith   PetscErrorCode ierr;
2456b24ad042SBarry Smith   PetscMPIInt    size;
245779bdfe76SSatish Balay 
2458d64ed03dSBarry Smith   PetscFunctionBegin;
2459f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2460f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2461d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2462273d9f13SBarry Smith   if (size > 1) {
2463273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2464273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2465273d9f13SBarry Smith   } else {
2466273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2467273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
24683914022bSBarry Smith   }
24693a40ed3dSBarry Smith   PetscFunctionReturn(0);
247079bdfe76SSatish Balay }
2471026e39d0SSatish Balay 
24724a2ae208SSatish Balay #undef __FUNCT__
24734a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
24746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
24750ac07820SSatish Balay {
24760ac07820SSatish Balay   Mat            mat;
24770ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2478dfbe8321SBarry Smith   PetscErrorCode ierr;
2479b24ad042SBarry Smith   PetscInt       len=0;
24800ac07820SSatish Balay 
2481d64ed03dSBarry Smith   PetscFunctionBegin;
24820ac07820SSatish Balay   *newmat       = 0;
24837adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2484899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
24857adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24861d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
24877fff6886SHong Zhang 
24884beb1cfeSHong Zhang   mat->factor       = matin->factor;
2489273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
24900ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
24917fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24927fff6886SHong Zhang 
2493273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2494899cda47SBarry Smith   mat->rmap.bs  = matin->rmap.bs;
24950ac07820SSatish Balay   a->bs2   = oldmat->bs2;
24960ac07820SSatish Balay   a->mbs   = oldmat->mbs;
24970ac07820SSatish Balay   a->nbs   = oldmat->nbs;
24980ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
24990ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
25000ac07820SSatish Balay 
25017adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
25027adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2503899cda47SBarry Smith 
25040ac07820SSatish Balay   a->size         = oldmat->size;
25050ac07820SSatish Balay   a->rank         = oldmat->rank;
2506aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2507aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2508aef5e8e0SSatish Balay   a->rowindices   = 0;
25090ac07820SSatish Balay   a->rowvalues    = 0;
25100ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
251130793edcSSatish Balay   a->barray       = 0;
2512899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2513899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2514899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2515899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
25160ac07820SSatish Balay 
2517133cdb44SSatish Balay   /* hash table stuff */
2518133cdb44SSatish Balay   a->ht           = 0;
2519133cdb44SSatish Balay   a->hd           = 0;
2520133cdb44SSatish Balay   a->ht_size      = 0;
2521133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
252225fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2523133cdb44SSatish Balay   a->ht_total_ct  = 0;
2524133cdb44SSatish Balay   a->ht_insert_ct = 0;
2525133cdb44SSatish Balay 
2526899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
25277adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
25287adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
25290ac07820SSatish Balay   if (oldmat->colmap) {
2530aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
25310f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
253248e59246SSatish Balay #else
2533b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
253452e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2535b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
253648e59246SSatish Balay #endif
25370ac07820SSatish Balay   } else a->colmap = 0;
25384beb1cfeSHong Zhang 
25390ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2540b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
254152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2542b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
25430ac07820SSatish Balay   } else a->garray = 0;
25440ac07820SSatish Balay 
25450ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
254652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
25470ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
254852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
25497fff6886SHong Zhang 
25502e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
255152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
25522e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
255352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
25547adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
25550ac07820SSatish Balay   *newmat = mat;
25564beb1cfeSHong Zhang 
25573a40ed3dSBarry Smith   PetscFunctionReturn(0);
25580ac07820SSatish Balay }
255957b952d6SSatish Balay 
2560e090d566SSatish Balay #include "petscsys.h"
256157b952d6SSatish Balay 
25624a2ae208SSatish Balay #undef __FUNCT__
25634a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2564f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
256557b952d6SSatish Balay {
256657b952d6SSatish Balay   Mat            A;
25676849ba73SBarry Smith   PetscErrorCode ierr;
2568b24ad042SBarry Smith   int            fd;
2569b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
257087828ca2SBarry Smith   PetscScalar    *vals,*buf;
257157b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
257257b952d6SSatish Balay   MPI_Status     status;
2573b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2574b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2575910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
2576167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2577dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2578910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
2579dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
258057b952d6SSatish Balay 
2581d64ed03dSBarry Smith   PetscFunctionBegin;
258277925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
25838c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
25848c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
258557b952d6SSatish Balay 
2586d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2587d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
258857b952d6SSatish Balay   if (!rank) {
2589b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2590e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2591552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
25926c5fab8fSBarry Smith   }
2593d64ed03dSBarry Smith 
2594b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
259557b952d6SSatish Balay   M = header[1]; N = header[2];
259657b952d6SSatish Balay 
259729bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
259857b952d6SSatish Balay 
259957b952d6SSatish Balay   /*
260057b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
260157b952d6SSatish Balay      divisible by the blocksize
260257b952d6SSatish Balay   */
260357b952d6SSatish Balay   Mbs        = M/bs;
2604dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
260557b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
260657b952d6SSatish Balay   else                  Mbs++;
260757b952d6SSatish Balay   if (extra_rows && !rank) {
26081e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
260957b952d6SSatish Balay   }
2610537820f0SBarry Smith 
261157b952d6SSatish Balay   /* determine ownership of all rows */
261257b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
261357b952d6SSatish Balay   m          = mbs*bs;
2614dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2615b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2616167e7480SBarry Smith 
2617167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2618167e7480SBarry Smith   if (!rank) {
2619167e7480SBarry Smith     mmax = rowners[1];
2620167e7480SBarry Smith     for (i=2; i<size; i++) {
2621167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2622167e7480SBarry Smith     }
2623ca02efcfSSatish Balay     mmax*=bs;
2624167e7480SBarry Smith   } else mmax = m;
2625167e7480SBarry Smith 
262657b952d6SSatish Balay   rowners[0] = 0;
2627cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2628cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
262957b952d6SSatish Balay   rstart = rowners[rank];
263057b952d6SSatish Balay   rend   = rowners[rank+1];
263157b952d6SSatish Balay 
263257b952d6SSatish Balay   /* distribute row lengths to all processors */
263319c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
263457b952d6SSatish Balay   if (!rank) {
2635dc231df0SBarry Smith     mend = m;
2636dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2637dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2638dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2639dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2640b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2641b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2642dc231df0SBarry Smith     for (j=0; j<m; j++) {
2643dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2644dc231df0SBarry Smith     }
2645dc231df0SBarry Smith     for (i=1; i<size; i++) {
2646dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2647dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2648dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2649dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2650dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2651dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
265257b952d6SSatish Balay         procsnz[i] += rowlengths[j];
265357b952d6SSatish Balay       }
2654dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
265557b952d6SSatish Balay     }
2656606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2657dc231df0SBarry Smith   } else {
2658dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2659dc231df0SBarry Smith   }
266057b952d6SSatish Balay 
2661dc231df0SBarry Smith   if (!rank) {
266257b952d6SSatish Balay     /* determine max buffer needed and allocate it */
26638a8e0b3aSBarry Smith     maxnz = procsnz[0];
2664cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
266557b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
266657b952d6SSatish Balay     }
2667b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
266857b952d6SSatish Balay 
266957b952d6SSatish Balay     /* read in my part of the matrix column indices  */
267057b952d6SSatish Balay     nz     = procsnz[0];
267119c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
267257b952d6SSatish Balay     mycols = ibuf;
2673cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2674e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2675cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2676cee3aa6bSSatish Balay 
267757b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
267857b952d6SSatish Balay     for (i=1; i<size-1; i++) {
267957b952d6SSatish Balay       nz   = procsnz[i];
2680e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2681b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
268257b952d6SSatish Balay     }
268357b952d6SSatish Balay     /* read in the stuff for the last proc */
268457b952d6SSatish Balay     if (size != 1) {
268557b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2686e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
268757b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2688b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
268957b952d6SSatish Balay     }
2690606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2691d64ed03dSBarry Smith   } else {
269257b952d6SSatish Balay     /* determine buffer space needed for message */
269357b952d6SSatish Balay     nz = 0;
269457b952d6SSatish Balay     for (i=0; i<m; i++) {
269557b952d6SSatish Balay       nz += locrowlens[i];
269657b952d6SSatish Balay     }
269719c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
269857b952d6SSatish Balay     mycols = ibuf;
269957b952d6SSatish Balay     /* receive message of column indices*/
2700b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2701b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
270229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
270357b952d6SSatish Balay   }
270457b952d6SSatish Balay 
270557b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2706dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2707dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2708dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2709dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2710dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
271157b952d6SSatish Balay   rowcount = 0; nzcount = 0;
271257b952d6SSatish Balay   for (i=0; i<mbs; i++) {
271357b952d6SSatish Balay     dcount  = 0;
271457b952d6SSatish Balay     odcount = 0;
271557b952d6SSatish Balay     for (j=0; j<bs; j++) {
271657b952d6SSatish Balay       kmax = locrowlens[rowcount];
271757b952d6SSatish Balay       for (k=0; k<kmax; k++) {
271857b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
271957b952d6SSatish Balay         if (!mask[tmp]) {
272057b952d6SSatish Balay           mask[tmp] = 1;
272157b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
272257b952d6SSatish Balay           else masked1[dcount++] = tmp;
272357b952d6SSatish Balay         }
272457b952d6SSatish Balay       }
272557b952d6SSatish Balay       rowcount++;
272657b952d6SSatish Balay     }
2727cee3aa6bSSatish Balay 
272857b952d6SSatish Balay     dlens[i]  = dcount;
272957b952d6SSatish Balay     odlens[i] = odcount;
2730cee3aa6bSSatish Balay 
273157b952d6SSatish Balay     /* zero out the mask elements we set */
273257b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
273357b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
273457b952d6SSatish Balay   }
2735cee3aa6bSSatish Balay 
273657b952d6SSatish Balay   /* create our matrix */
2737f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2738f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
273978ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
274078ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
274178ae41b4SKris Buschelman 
274257b952d6SSatish Balay   if (!rank) {
274319c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
274457b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
274557b952d6SSatish Balay     nz = procsnz[0];
274657b952d6SSatish Balay     vals = buf;
2747cee3aa6bSSatish Balay     mycols = ibuf;
2748cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2749e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2750cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2751537820f0SBarry Smith 
275257b952d6SSatish Balay     /* insert into matrix */
275357b952d6SSatish Balay     jj      = rstart*bs;
275457b952d6SSatish Balay     for (i=0; i<m; i++) {
2755dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
275657b952d6SSatish Balay       mycols += locrowlens[i];
275757b952d6SSatish Balay       vals   += locrowlens[i];
275857b952d6SSatish Balay       jj++;
275957b952d6SSatish Balay     }
276057b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
276157b952d6SSatish Balay     for (i=1; i<size-1; i++) {
276257b952d6SSatish Balay       nz   = procsnz[i];
276357b952d6SSatish Balay       vals = buf;
2764e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
27657adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
276657b952d6SSatish Balay     }
276757b952d6SSatish Balay     /* the last proc */
276857b952d6SSatish Balay     if (size != 1){
276957b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2770cee3aa6bSSatish Balay       vals = buf;
2771e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
277257b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
27737adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
277457b952d6SSatish Balay     }
2775606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2776d64ed03dSBarry Smith   } else {
277757b952d6SSatish Balay     /* receive numeric values */
277819c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
277957b952d6SSatish Balay 
278057b952d6SSatish Balay     /* receive message of values*/
278157b952d6SSatish Balay     vals   = buf;
2782cee3aa6bSSatish Balay     mycols = ibuf;
27837adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2784ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
278529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
278657b952d6SSatish Balay 
278757b952d6SSatish Balay     /* insert into matrix */
278857b952d6SSatish Balay     jj      = rstart*bs;
2789cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2790dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
279157b952d6SSatish Balay       mycols += locrowlens[i];
279257b952d6SSatish Balay       vals   += locrowlens[i];
279357b952d6SSatish Balay       jj++;
279457b952d6SSatish Balay     }
279557b952d6SSatish Balay   }
2796606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2797606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2798606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2799dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2800dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2801dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
28026d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28036d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
280478ae41b4SKris Buschelman 
280578ae41b4SKris Buschelman   *newmat = A;
28063a40ed3dSBarry Smith   PetscFunctionReturn(0);
280757b952d6SSatish Balay }
280857b952d6SSatish Balay 
28094a2ae208SSatish Balay #undef __FUNCT__
28104a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2811133cdb44SSatish Balay /*@
2812133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2813133cdb44SSatish Balay 
2814133cdb44SSatish Balay    Input Parameters:
2815133cdb44SSatish Balay .  mat  - the matrix
2816133cdb44SSatish Balay .  fact - factor
2817133cdb44SSatish Balay 
2818fee21e36SBarry Smith    Collective on Mat
2819fee21e36SBarry Smith 
28208c890885SBarry Smith    Level: advanced
28218c890885SBarry Smith 
2822133cdb44SSatish Balay   Notes:
28238c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
2824133cdb44SSatish Balay 
2825133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2826133cdb44SSatish Balay 
2827133cdb44SSatish Balay .seealso: MatSetOption()
2828133cdb44SSatish Balay @*/
2829be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2830133cdb44SSatish Balay {
2831dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
28325bf65638SKris Buschelman 
28335bf65638SKris Buschelman   PetscFunctionBegin;
28345bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
28355bf65638SKris Buschelman   if (f) {
28365bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
28375bf65638SKris Buschelman   }
28385bf65638SKris Buschelman   PetscFunctionReturn(0);
28395bf65638SKris Buschelman }
28405bf65638SKris Buschelman 
2841be1d678aSKris Buschelman EXTERN_C_BEGIN
28425bf65638SKris Buschelman #undef __FUNCT__
28435bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2844be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
28455bf65638SKris Buschelman {
284625fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2847133cdb44SSatish Balay 
2848133cdb44SSatish Balay   PetscFunctionBegin;
2849133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2850133cdb44SSatish Balay   baij->ht_fact = fact;
2851133cdb44SSatish Balay   PetscFunctionReturn(0);
2852133cdb44SSatish Balay }
2853be1d678aSKris Buschelman EXTERN_C_END
2854f2a5309cSSatish Balay 
28554a2ae208SSatish Balay #undef __FUNCT__
28564a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2857be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2858f2a5309cSSatish Balay {
2859f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2860f2a5309cSSatish Balay   PetscFunctionBegin;
2861f2a5309cSSatish Balay   *Ad     = a->A;
2862f2a5309cSSatish Balay   *Ao     = a->B;
2863195d93cdSBarry Smith   *colmap = a->garray;
2864f2a5309cSSatish Balay   PetscFunctionReturn(0);
2865f2a5309cSSatish Balay }
286685535b8eSBarry Smith 
286785535b8eSBarry Smith /*
286885535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
286985535b8eSBarry Smith */
287085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
287185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
287285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
287385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
287485535b8eSBarry Smith #endif
287585535b8eSBarry Smith 
287685535b8eSBarry Smith #undef __FUNCT__
287785535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
287885535b8eSBarry Smith /*@C
287985535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
288085535b8eSBarry Smith 
288185535b8eSBarry Smith   Collective on Mat
288285535b8eSBarry Smith 
288385535b8eSBarry Smith   Input Parameters:
288485535b8eSBarry Smith + mat - the matrix
288585535b8eSBarry Smith . min - number of input rows
288685535b8eSBarry Smith . im - input rows
288785535b8eSBarry Smith . nin - number of input columns
288885535b8eSBarry Smith . in - input columns
288985535b8eSBarry Smith . v - numerical values input
289085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
289185535b8eSBarry Smith 
289285535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
289385535b8eSBarry Smith 
289485535b8eSBarry Smith   Level: advanced
289585535b8eSBarry Smith 
289685535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
289785535b8eSBarry Smith @*/
289885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
289985535b8eSBarry Smith {
290085535b8eSBarry Smith   /* convert input arguments to C version */
290185535b8eSBarry Smith   Mat             mat = *matin;
290285535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
290385535b8eSBarry Smith   InsertMode      addv = *addvin;
290485535b8eSBarry Smith 
290585535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
290685535b8eSBarry Smith   const MatScalar *value;
290785535b8eSBarry Smith   MatScalar       *barray=baij->barray;
290885535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
290985535b8eSBarry Smith   PetscErrorCode  ierr;
291085535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
291185535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
291285535b8eSBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
291385535b8eSBarry Smith 
291485535b8eSBarry Smith   PetscFunctionBegin;
291585535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
291685535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
291785535b8eSBarry Smith     mat->insertmode = addv;
291885535b8eSBarry Smith   }
291985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
292085535b8eSBarry Smith   else if (mat->insertmode != addv) {
292185535b8eSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
292285535b8eSBarry Smith   }
292385535b8eSBarry Smith   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
292485535b8eSBarry Smith #endif
292585535b8eSBarry Smith   if (mat->assembled) {
292685535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
292785535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
292885535b8eSBarry Smith   }
292985535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
293085535b8eSBarry Smith 
293185535b8eSBarry Smith 
293285535b8eSBarry Smith   if(!barray) {
293385535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
293485535b8eSBarry Smith     baij->barray = barray;
293585535b8eSBarry Smith   }
293685535b8eSBarry Smith 
293785535b8eSBarry Smith   if (roworiented) {
293885535b8eSBarry Smith     stepval = (n-1)*bs;
293985535b8eSBarry Smith   } else {
294085535b8eSBarry Smith     stepval = (m-1)*bs;
294185535b8eSBarry Smith   }
294285535b8eSBarry Smith   for (i=0; i<m; i++) {
294385535b8eSBarry Smith     if (im[i] < 0) continue;
294485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
294585535b8eSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
294685535b8eSBarry Smith #endif
294785535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
294885535b8eSBarry Smith       row = im[i] - rstart;
294985535b8eSBarry Smith       for (j=0; j<n; j++) {
295085535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
295185535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
295285535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
295385535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
295485535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
295585535b8eSBarry Smith         } else { /* Here a copy is required */
295685535b8eSBarry Smith           if (roworiented) {
295785535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
295885535b8eSBarry Smith           } else {
295985535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
296085535b8eSBarry Smith           }
296185535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
296285535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
296385535b8eSBarry Smith               *barray++  = *value++;
296485535b8eSBarry Smith             }
296585535b8eSBarry Smith           }
296685535b8eSBarry Smith           barray -=bs2;
296785535b8eSBarry Smith         }
296885535b8eSBarry Smith 
296985535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
297085535b8eSBarry Smith           col  = in[j] - cstart;
297197e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
297285535b8eSBarry Smith         }
297385535b8eSBarry Smith         else if (in[j] < 0) continue;
297485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
297585535b8eSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
297685535b8eSBarry Smith #endif
297785535b8eSBarry Smith         else {
297885535b8eSBarry Smith           if (mat->was_assembled) {
297985535b8eSBarry Smith             if (!baij->colmap) {
298085535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
298185535b8eSBarry Smith             }
298285535b8eSBarry Smith 
298385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
298485535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
298585535b8eSBarry Smith             { PetscInt data;
298685535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
298785535b8eSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
298885535b8eSBarry Smith             }
298985535b8eSBarry Smith #else
299085535b8eSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
299185535b8eSBarry Smith #endif
299285535b8eSBarry Smith #endif
299385535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
299485535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
299585535b8eSBarry Smith             col  = (col - 1)/bs;
299685535b8eSBarry Smith #else
299785535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
299885535b8eSBarry Smith #endif
299985535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
300085535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
300185535b8eSBarry Smith               col =  in[j];
300285535b8eSBarry Smith             }
300385535b8eSBarry Smith           }
300485535b8eSBarry Smith           else col = in[j];
300597e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
300685535b8eSBarry Smith         }
300785535b8eSBarry Smith       }
300885535b8eSBarry Smith     } else {
300985535b8eSBarry Smith       if (!baij->donotstash) {
301085535b8eSBarry Smith         if (roworiented) {
301185535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
301285535b8eSBarry Smith         } else {
301385535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
301485535b8eSBarry Smith         }
301585535b8eSBarry Smith       }
301685535b8eSBarry Smith     }
301785535b8eSBarry Smith   }
301885535b8eSBarry Smith 
301985535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
302085535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
302185535b8eSBarry Smith   PetscFunctionReturn(0);
302285535b8eSBarry Smith }
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