1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 277843d17aSBarry Smith 28985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 291ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 30985db425SBarry Smith if (idx) { 31ff6e566aSBarry Smith for (i=0; i<A->cmap.n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap.rstart;} 32985db425SBarry Smith } 337843d17aSBarry Smith 34899cda47SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr); 35985db425SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap.n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 36985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 371ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 387843d17aSBarry Smith 39899cda47SBarry Smith for (i=0; i<A->rmap.n; i++){ 40985db425SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap.bs*a->garray[idxb[i]/A->cmap.bs] + (idxb[i] % A->cmap.bs);} 417843d17aSBarry Smith } 427843d17aSBarry Smith 431ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 441ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 45985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 46ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 477843d17aSBarry Smith PetscFunctionReturn(0); 487843d17aSBarry Smith } 497843d17aSBarry Smith 507fc3c18eSBarry Smith EXTERN_C_BEGIN 514a2ae208SSatish Balay #undef __FUNCT__ 524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 547fc3c18eSBarry Smith { 557fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 56dfbe8321SBarry Smith PetscErrorCode ierr; 577fc3c18eSBarry Smith 587fc3c18eSBarry Smith PetscFunctionBegin; 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 607fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 617fc3c18eSBarry Smith PetscFunctionReturn(0); 627fc3c18eSBarry Smith } 637fc3c18eSBarry Smith EXTERN_C_END 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith EXTERN_C_BEGIN 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 697fc3c18eSBarry Smith { 707fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 71dfbe8321SBarry Smith PetscErrorCode ierr; 727fc3c18eSBarry Smith 737fc3c18eSBarry Smith PetscFunctionBegin; 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 757fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 767fc3c18eSBarry Smith PetscFunctionReturn(0); 777fc3c18eSBarry Smith } 787fc3c18eSBarry Smith EXTERN_C_END 797fc3c18eSBarry Smith 80537820f0SBarry Smith /* 81537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8357b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8457b952d6SSatish Balay length of colmap equals the global matrix length. 8557b952d6SSatish Balay */ 864a2ae208SSatish Balay #undef __FUNCT__ 874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8957b952d6SSatish Balay { 9057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 926849ba73SBarry Smith PetscErrorCode ierr; 93899cda47SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap.bs; 9457b952d6SSatish Balay 95d64ed03dSBarry Smith PetscFunctionBegin; 96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 97f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9848e59246SSatish Balay for (i=0; i<nbs; i++){ 990f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 10048e59246SSatish Balay } 10148e59246SSatish Balay #else 102b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 105928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10648e59246SSatish Balay #endif 1073a40ed3dSBarry Smith PetscFunctionReturn(0); 10857b952d6SSatish Balay } 10957b952d6SSatish Balay 11080c1aa95SSatish Balay #define CHUNKSIZE 10 11180c1aa95SSatish Balay 112f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11380c1aa95SSatish Balay { \ 11480c1aa95SSatish Balay \ 11580c1aa95SSatish Balay brow = row/bs; \ 11680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 117ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11880c1aa95SSatish Balay bcol = col/bs; \ 11980c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 120ab26458aSBarry Smith low = 0; high = nrow; \ 121ab26458aSBarry Smith while (high-low > 3) { \ 122ab26458aSBarry Smith t = (low+high)/2; \ 123ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 124ab26458aSBarry Smith else low = t; \ 125ab26458aSBarry Smith } \ 126ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12780c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12880c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12980c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 130eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 131eada6651SSatish Balay else *bap = value; \ 132ac7a638eSSatish Balay goto a_noinsert; \ 13380c1aa95SSatish Balay } \ 13480c1aa95SSatish Balay } \ 13589280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 136085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 137421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13880c1aa95SSatish Balay N = nrow++ - 1; \ 13980c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 14080c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14180c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1423eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14380c1aa95SSatish Balay } \ 1443eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14580c1aa95SSatish Balay rp[_i] = bcol; \ 14680c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 147ac7a638eSSatish Balay a_noinsert:; \ 14880c1aa95SSatish Balay ailen[brow] = nrow; \ 14980c1aa95SSatish Balay } 15057b952d6SSatish Balay 151ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 152ac7a638eSSatish Balay { \ 153ac7a638eSSatish Balay brow = row/bs; \ 154ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 155ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 156ac7a638eSSatish Balay bcol = col/bs; \ 157ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 158ac7a638eSSatish Balay low = 0; high = nrow; \ 159ac7a638eSSatish Balay while (high-low > 3) { \ 160ac7a638eSSatish Balay t = (low+high)/2; \ 161ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 162ac7a638eSSatish Balay else low = t; \ 163ac7a638eSSatish Balay } \ 164ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 165ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 166ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 167ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 168ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 169ac7a638eSSatish Balay else *bap = value; \ 170ac7a638eSSatish Balay goto b_noinsert; \ 171ac7a638eSSatish Balay } \ 172ac7a638eSSatish Balay } \ 17389280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 174085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 175421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 176085a36d4SBarry Smith CHKMEMQ;\ 177ac7a638eSSatish Balay N = nrow++ - 1; \ 178ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 179ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 180ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1813eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 182ac7a638eSSatish Balay } \ 1833eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 184ac7a638eSSatish Balay rp[_i] = bcol; \ 185ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 186ac7a638eSSatish Balay b_noinsert:; \ 187ac7a638eSSatish Balay bilen[brow] = nrow; \ 188ac7a638eSSatish Balay } 189ac7a638eSSatish Balay 1904a2ae208SSatish Balay #undef __FUNCT__ 1914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 192b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19357b952d6SSatish Balay { 19457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19593fea6afSBarry Smith MatScalar value; 196273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 197dfbe8321SBarry Smith PetscErrorCode ierr; 198b24ad042SBarry Smith PetscInt i,j,row,col; 199899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 200899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 201899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 20257b952d6SSatish Balay 203eada6651SSatish Balay /* Some Variables required in the macro */ 20480c1aa95SSatish Balay Mat A = baij->A; 20580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 206b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2073eda8832SBarry Smith MatScalar *aa=a->a; 208ac7a638eSSatish Balay 209ac7a638eSSatish Balay Mat B = baij->B; 210ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 211b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2123eda8832SBarry Smith MatScalar *ba=b->a; 213ac7a638eSSatish Balay 214b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 215b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2163eda8832SBarry Smith MatScalar *ap,*bap; 21780c1aa95SSatish Balay 218d64ed03dSBarry Smith PetscFunctionBegin; 21957b952d6SSatish Balay for (i=0; i<m; i++) { 2205ef9f2a5SBarry Smith if (im[i] < 0) continue; 2212515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 222899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 223639f9d9dSBarry Smith #endif 22457b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22557b952d6SSatish Balay row = im[i] - rstart_orig; 22657b952d6SSatish Balay for (j=0; j<n; j++) { 22757b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22857b952d6SSatish Balay col = in[j] - cstart_orig; 22957b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23180c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23273959e64SBarry Smith } else if (in[j] < 0) continue; 2332515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 234899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);} 235639f9d9dSBarry Smith #endif 23657b952d6SSatish Balay else { 23757b952d6SSatish Balay if (mat->was_assembled) { 238905e6a2fSBarry Smith if (!baij->colmap) { 239905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 240905e6a2fSBarry Smith } 241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 243bba1ac68SSatish Balay col = col - 1; 24448e59246SSatish Balay #else 245bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24648e59246SSatish Balay #endif 24757b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24857b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2498295de27SSatish Balay col = in[j]; 2509bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2519bf004c3SSatish Balay B = baij->B; 2529bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2539bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2549bf004c3SSatish Balay ba=b->a; 255bba1ac68SSatish Balay } else col += in[j]%bs; 2568295de27SSatish Balay } else col = in[j]; 25757b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25890da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25990da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 26057b952d6SSatish Balay } 26157b952d6SSatish Balay } 262d64ed03dSBarry Smith } else { 26390f02eecSBarry Smith if (!baij->donotstash) { 264ff2fd236SBarry Smith if (roworiented) { 2656fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 266ff2fd236SBarry Smith } else { 2676fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27190f02eecSBarry Smith } 2723a40ed3dSBarry Smith PetscFunctionReturn(0); 27357b952d6SSatish Balay } 27457b952d6SSatish Balay 2754a2ae208SSatish Balay #undef __FUNCT__ 27697e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 278ab26458aSBarry Smith { 279ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 280dd6ea824SBarry Smith const PetscScalar *value; 281f15d580aSBarry Smith MatScalar *barray=baij->barray; 282273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 283dfbe8321SBarry Smith PetscErrorCode ierr; 284899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 285899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 286899cda47SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2; 287ab26458aSBarry Smith 288b16ae2b1SBarry Smith PetscFunctionBegin; 28930793edcSSatish Balay if(!barray) { 29082502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29182502324SSatish Balay baij->barray = barray; 29230793edcSSatish Balay } 29330793edcSSatish Balay 294ab26458aSBarry Smith if (roworiented) { 295ab26458aSBarry Smith stepval = (n-1)*bs; 296ab26458aSBarry Smith } else { 297ab26458aSBarry Smith stepval = (m-1)*bs; 298ab26458aSBarry Smith } 299ab26458aSBarry Smith for (i=0; i<m; i++) { 3005ef9f2a5SBarry Smith if (im[i] < 0) continue; 3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 303ab26458aSBarry Smith #endif 304ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 305ab26458aSBarry Smith row = im[i] - rstart; 306ab26458aSBarry Smith for (j=0; j<n; j++) { 30715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 309f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31015b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 311f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31215b57d14SSatish Balay } else { /* Here a copy is required */ 313ab26458aSBarry Smith if (roworiented) { 314ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 315ab26458aSBarry Smith } else { 316ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 317abef11f7SSatish Balay } 31847513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31947513183SBarry Smith for (jj=0; jj<bs; jj++) { 32030793edcSSatish Balay *barray++ = *value++; 32147513183SBarry Smith } 32247513183SBarry Smith } 32330793edcSSatish Balay barray -=bs2; 32415b57d14SSatish Balay } 325abef11f7SSatish Balay 326abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 327abef11f7SSatish Balay col = in[j] - cstart; 32897e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 329ab26458aSBarry Smith } 3305ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3312515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 333ab26458aSBarry Smith #endif 334ab26458aSBarry Smith else { 335ab26458aSBarry Smith if (mat->was_assembled) { 336ab26458aSBarry Smith if (!baij->colmap) { 337ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 338ab26458aSBarry Smith } 339a5eb4965SSatish Balay 3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 341aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 342b24ad042SBarry Smith { PetscInt data; 3430f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34429bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 345fa46199cSSatish Balay } 34648e59246SSatish Balay #else 34729bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 348a5eb4965SSatish Balay #endif 34948e59246SSatish Balay #endif 350aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3510f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 352fa46199cSSatish Balay col = (col - 1)/bs; 35348e59246SSatish Balay #else 354a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35548e59246SSatish Balay #endif 356ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 357ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 358ab26458aSBarry Smith col = in[j]; 359ab26458aSBarry Smith } 360ab26458aSBarry Smith } 361ab26458aSBarry Smith else col = in[j]; 36297e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 363ab26458aSBarry Smith } 364ab26458aSBarry Smith } 365d64ed03dSBarry Smith } else { 366ab26458aSBarry Smith if (!baij->donotstash) { 367ff2fd236SBarry Smith if (roworiented) { 3686fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 369ff2fd236SBarry Smith } else { 3706fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 371ff2fd236SBarry Smith } 372abef11f7SSatish Balay } 373ab26458aSBarry Smith } 374ab26458aSBarry Smith } 3753a40ed3dSBarry Smith PetscFunctionReturn(0); 376ab26458aSBarry Smith } 3776fa18ffdSBarry Smith 3780bdbc534SSatish Balay #define HASH_KEY 0.6180339887 379b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 380b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 381b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3824a2ae208SSatish Balay #undef __FUNCT__ 38397e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38497e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3850bdbc534SSatish Balay { 3860bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 387273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 388dfbe8321SBarry Smith PetscErrorCode ierr; 389b24ad042SBarry Smith PetscInt i,j,row,col; 390899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 391899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,Nbs=baij->Nbs; 392899cda47SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx; 393329f5518SBarry Smith PetscReal tmp; 3943eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3952515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 396b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3974a15367fSSatish Balay #endif 3980bdbc534SSatish Balay 3990bdbc534SSatish Balay PetscFunctionBegin; 4000bdbc534SSatish Balay 4010bdbc534SSatish Balay for (i=0; i<m; i++) { 4022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40329bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 404899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 4050bdbc534SSatish Balay #endif 4060bdbc534SSatish Balay row = im[i]; 407c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4080bdbc534SSatish Balay for (j=0; j<n; j++) { 4090bdbc534SSatish Balay col = in[j]; 4106fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 411b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 412c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 413c2760754SSatish Balay h1 = HASH(size,key,tmp); 4140bdbc534SSatish Balay 415c2760754SSatish Balay 416c2760754SSatish Balay idx = h1; 4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 418187ce0cbSSatish Balay insert_ct++; 419187ce0cbSSatish Balay total_ct++; 420187ce0cbSSatish Balay if (HT[idx] != key) { 421187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 422187ce0cbSSatish Balay if (idx == size) { 423187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 424187ce0cbSSatish Balay if (idx == h1) { 42577431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay } 429187ce0cbSSatish Balay #else 430c2760754SSatish Balay if (HT[idx] != key) { 431c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 432c2760754SSatish Balay if (idx == size) { 433c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 434c2760754SSatish Balay if (idx == h1) { 43577431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438c2760754SSatish Balay } 439187ce0cbSSatish Balay #endif 440c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 441c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 442c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4430bdbc534SSatish Balay } 4440bdbc534SSatish Balay } else { 4450bdbc534SSatish Balay if (!baij->donotstash) { 446ff2fd236SBarry Smith if (roworiented) { 4478798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 448ff2fd236SBarry Smith } else { 4498798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay } 4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 455187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 456187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 457187ce0cbSSatish Balay #endif 4580bdbc534SSatish Balay PetscFunctionReturn(0); 4590bdbc534SSatish Balay } 4600bdbc534SSatish Balay 4614a2ae208SSatish Balay #undef __FUNCT__ 46297e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46397e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4640bdbc534SSatish Balay { 4650bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 466273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 467dfbe8321SBarry Smith PetscErrorCode ierr; 468b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 469899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 470ab715e2cSSatish Balay PetscInt rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2,nbs2=n*bs2; 471b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 472329f5518SBarry Smith PetscReal tmp; 4733eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 474dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 476b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4774a15367fSSatish Balay #endif 4780bdbc534SSatish Balay 479d0a41580SSatish Balay PetscFunctionBegin; 480d0a41580SSatish Balay 4810bdbc534SSatish Balay if (roworiented) { 4820bdbc534SSatish Balay stepval = (n-1)*bs; 4830bdbc534SSatish Balay } else { 4840bdbc534SSatish Balay stepval = (m-1)*bs; 4850bdbc534SSatish Balay } 4860bdbc534SSatish Balay for (i=0; i<m; i++) { 4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48877431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48977431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4900bdbc534SSatish Balay #endif 4910bdbc534SSatish Balay row = im[i]; 492ab715e2cSSatish Balay v_t = v + i*nbs2; 493c2760754SSatish Balay if (row >= rstart && row < rend) { 4940bdbc534SSatish Balay for (j=0; j<n; j++) { 4950bdbc534SSatish Balay col = in[j]; 4960bdbc534SSatish Balay 4970bdbc534SSatish Balay /* Look up into the Hash Table */ 498c2760754SSatish Balay key = row*Nbs+col+1; 499c2760754SSatish Balay h1 = HASH(size,key,tmp); 5000bdbc534SSatish Balay 501c2760754SSatish Balay idx = h1; 5022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 503187ce0cbSSatish Balay total_ct++; 504187ce0cbSSatish Balay insert_ct++; 505187ce0cbSSatish Balay if (HT[idx] != key) { 506187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 507187ce0cbSSatish Balay if (idx == size) { 508187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 509187ce0cbSSatish Balay if (idx == h1) { 51077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay } 514187ce0cbSSatish Balay #else 515c2760754SSatish Balay if (HT[idx] != key) { 516c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 517c2760754SSatish Balay if (idx == size) { 518c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 519c2760754SSatish Balay if (idx == h1) { 52077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523c2760754SSatish Balay } 524187ce0cbSSatish Balay #endif 525c2760754SSatish Balay baij_a = HD[idx]; 5260bdbc534SSatish Balay if (roworiented) { 527c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 528187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 529187ce0cbSSatish Balay value = v_t; 530187ce0cbSSatish Balay v_t += bs; 531fef45726SSatish Balay if (addv == ADD_VALUES) { 532c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 533c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 534fef45726SSatish Balay baij_a[jj] += *value++; 535b4cc0f5aSSatish Balay } 536b4cc0f5aSSatish Balay } 537fef45726SSatish Balay } else { 538c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 539c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 540fef45726SSatish Balay baij_a[jj] = *value++; 541fef45726SSatish Balay } 542fef45726SSatish Balay } 543fef45726SSatish Balay } 5440bdbc534SSatish Balay } else { 5450bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 546fef45726SSatish Balay if (addv == ADD_VALUES) { 547b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5480bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 549fef45726SSatish Balay baij_a[jj] += *value++; 550fef45726SSatish Balay } 551fef45726SSatish Balay } 552fef45726SSatish Balay } else { 553fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 554fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 555fef45726SSatish Balay baij_a[jj] = *value++; 556fef45726SSatish Balay } 557b4cc0f5aSSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } 5610bdbc534SSatish Balay } else { 5620bdbc534SSatish Balay if (!baij->donotstash) { 5630bdbc534SSatish Balay if (roworiented) { 5648798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5650bdbc534SSatish Balay } else { 5668798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5700bdbc534SSatish Balay } 5712515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 572187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 573187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 574187ce0cbSSatish Balay #endif 5750bdbc534SSatish Balay PetscFunctionReturn(0); 5760bdbc534SSatish Balay } 577133cdb44SSatish Balay 5784a2ae208SSatish Balay #undef __FUNCT__ 5794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 580b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 581d6de1c52SSatish Balay { 582d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5836849ba73SBarry Smith PetscErrorCode ierr; 584899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 585899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 586d6de1c52SSatish Balay 587133cdb44SSatish Balay PetscFunctionBegin; 588d6de1c52SSatish Balay for (i=0; i<m; i++) { 58997e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 590899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 591d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 592d6de1c52SSatish Balay row = idxm[i] - bsrstart; 593d6de1c52SSatish Balay for (j=0; j<n; j++) { 59497e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 595899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 596d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 597d6de1c52SSatish Balay col = idxn[j] - bscstart; 59898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 599d64ed03dSBarry Smith } else { 600905e6a2fSBarry Smith if (!baij->colmap) { 601905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 602905e6a2fSBarry Smith } 603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6040f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 605fa46199cSSatish Balay data --; 60648e59246SSatish Balay #else 60748e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60848e59246SSatish Balay #endif 60948e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 610d9d09a02SSatish Balay else { 61148e59246SSatish Balay col = data + idxn[j]%bs; 61298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d6de1c52SSatish Balay } 616d64ed03dSBarry Smith } else { 61729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 618d6de1c52SSatish Balay } 619d6de1c52SSatish Balay } 6203a40ed3dSBarry Smith PetscFunctionReturn(0); 621d6de1c52SSatish Balay } 622d6de1c52SSatish Balay 6234a2ae208SSatish Balay #undef __FUNCT__ 6244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 625dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 626d6de1c52SSatish Balay { 627d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 628d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 629dfbe8321SBarry Smith PetscErrorCode ierr; 630899cda47SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col; 631329f5518SBarry Smith PetscReal sum = 0.0; 6323eda8832SBarry Smith MatScalar *v; 633d6de1c52SSatish Balay 634d64ed03dSBarry Smith PetscFunctionBegin; 635d6de1c52SSatish Balay if (baij->size == 1) { 636064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 637d6de1c52SSatish Balay } else { 638d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 639d6de1c52SSatish Balay v = amat->a; 6408a62d963SHong Zhang nz = amat->nz*bs2; 6418a62d963SHong Zhang for (i=0; i<nz; i++) { 642aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 643329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 644d6de1c52SSatish Balay #else 645d6de1c52SSatish Balay sum += (*v)*(*v); v++; 646d6de1c52SSatish Balay #endif 647d6de1c52SSatish Balay } 648d6de1c52SSatish Balay v = bmat->a; 6498a62d963SHong Zhang nz = bmat->nz*bs2; 6508a62d963SHong Zhang for (i=0; i<nz; i++) { 651aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 652329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 653d6de1c52SSatish Balay #else 654d6de1c52SSatish Balay sum += (*v)*(*v); v++; 655d6de1c52SSatish Balay #endif 656d6de1c52SSatish Balay } 6577adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 658064f8208SBarry Smith *nrm = sqrt(*nrm); 6598a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6608a62d963SHong Zhang PetscReal *tmp,*tmp2; 661899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 662899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 663899cda47SBarry Smith tmp2 = tmp + mat->cmap.N; 664899cda47SBarry Smith ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 6658a62d963SHong Zhang v = amat->a; jj = amat->j; 6668a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6678a62d963SHong Zhang for (j=0; j<bs; j++){ 6688a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6698a62d963SHong Zhang for (row=0; row<bs; row++){ 6708a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6718a62d963SHong Zhang } 6728a62d963SHong Zhang } 6738a62d963SHong Zhang jj++; 6748a62d963SHong Zhang } 6758a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6768a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6778a62d963SHong Zhang for (j=0; j<bs; j++){ 6788a62d963SHong Zhang col = bs*garray[*jj] + j; 6798a62d963SHong Zhang for (row=0; row<bs; row++){ 6808a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6818a62d963SHong Zhang } 6828a62d963SHong Zhang } 6838a62d963SHong Zhang jj++; 6848a62d963SHong Zhang } 6857adad957SLisandro Dalcin ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6868a62d963SHong Zhang *nrm = 0.0; 687899cda47SBarry Smith for (j=0; j<mat->cmap.N; j++) { 6888a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6898a62d963SHong Zhang } 6908a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6918a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 692577dd1f9SKris Buschelman PetscReal *sums; 693577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6948a62d963SHong Zhang sum = 0.0; 6958a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6968a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6978a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6988a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6998a62d963SHong Zhang for (i=0; i<nz; i++) { 7008a62d963SHong Zhang for (col=0; col<bs; col++){ 7018a62d963SHong Zhang for (row=0; row<bs; row++){ 7028a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang } 7068a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7078a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7088a62d963SHong Zhang for (i=0; i<nz; i++) { 7098a62d963SHong Zhang for (col=0; col<bs; col++){ 7108a62d963SHong Zhang for (row=0; row<bs; row++){ 7118a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang } 7158a62d963SHong Zhang for (row=0; row<bs; row++){ 7168a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7178a62d963SHong Zhang } 7188a62d963SHong Zhang } 7197adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 720577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 721d64ed03dSBarry Smith } else { 72229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 723d6de1c52SSatish Balay } 724d64ed03dSBarry Smith } 7253a40ed3dSBarry Smith PetscFunctionReturn(0); 726d6de1c52SSatish Balay } 72757b952d6SSatish Balay 728fef45726SSatish Balay /* 729fef45726SSatish Balay Creates the hash table, and sets the table 730fef45726SSatish Balay This table is created only once. 731fef45726SSatish Balay If new entried need to be added to the matrix 732fef45726SSatish Balay then the hash table has to be destroyed and 733fef45726SSatish Balay recreated. 734fef45726SSatish Balay */ 7354a2ae208SSatish Balay #undef __FUNCT__ 7364a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 737dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 738596b8d2eSBarry Smith { 739596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 740596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 741596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 742b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7436849ba73SBarry Smith PetscErrorCode ierr; 744899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 745899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 746b24ad042SBarry Smith PetscInt *HT,key; 7473eda8832SBarry Smith MatScalar **HD; 748329f5518SBarry Smith PetscReal tmp; 7496cf91177SBarry Smith #if defined(PETSC_USE_INFO) 750b24ad042SBarry Smith PetscInt ct=0,max=0; 7514a15367fSSatish Balay #endif 752fef45726SSatish Balay 753d64ed03dSBarry Smith PetscFunctionBegin; 754b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7550bdbc534SSatish Balay size = baij->ht_size; 756fef45726SSatish Balay 7570bdbc534SSatish Balay if (baij->ht) { 7580bdbc534SSatish Balay PetscFunctionReturn(0); 759596b8d2eSBarry Smith } 7600bdbc534SSatish Balay 761fef45726SSatish Balay /* Allocate Memory for Hash Table */ 762b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 763b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 764b9e4cc15SSatish Balay HD = baij->hd; 765a07cd24cSSatish Balay HT = baij->ht; 766b9e4cc15SSatish Balay 767b9e4cc15SSatish Balay 768b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7690bdbc534SSatish Balay 770596b8d2eSBarry Smith 771596b8d2eSBarry Smith /* Loop Over A */ 7720bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 773596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7740bdbc534SSatish Balay row = i+rstart; 7750bdbc534SSatish Balay col = aj[j]+cstart; 776596b8d2eSBarry Smith 777187ce0cbSSatish Balay key = row*Nbs + col + 1; 778c2760754SSatish Balay h1 = HASH(size,key,tmp); 7790bdbc534SSatish Balay for (k=0; k<size; k++){ 780958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7810bdbc534SSatish Balay HT[(h1+k)%size] = key; 7820bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 783596b8d2eSBarry Smith break; 7846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 785187ce0cbSSatish Balay } else { 786187ce0cbSSatish Balay ct++; 787187ce0cbSSatish Balay #endif 788596b8d2eSBarry Smith } 789187ce0cbSSatish Balay } 7906cf91177SBarry Smith #if defined(PETSC_USE_INFO) 791187ce0cbSSatish Balay if (k> max) max = k; 792187ce0cbSSatish Balay #endif 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith } 795596b8d2eSBarry Smith /* Loop Over B */ 7960bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 797596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7980bdbc534SSatish Balay row = i+rstart; 7990bdbc534SSatish Balay col = garray[bj[j]]; 800187ce0cbSSatish Balay key = row*Nbs + col + 1; 801c2760754SSatish Balay h1 = HASH(size,key,tmp); 8020bdbc534SSatish Balay for (k=0; k<size; k++){ 803958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8040bdbc534SSatish Balay HT[(h1+k)%size] = key; 8050bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 806596b8d2eSBarry Smith break; 8076cf91177SBarry Smith #if defined(PETSC_USE_INFO) 808187ce0cbSSatish Balay } else { 809187ce0cbSSatish Balay ct++; 810187ce0cbSSatish Balay #endif 811596b8d2eSBarry Smith } 812187ce0cbSSatish Balay } 8136cf91177SBarry Smith #if defined(PETSC_USE_INFO) 814187ce0cbSSatish Balay if (k> max) max = k; 815187ce0cbSSatish Balay #endif 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith } 818596b8d2eSBarry Smith 819596b8d2eSBarry Smith /* Print Summary */ 8206cf91177SBarry Smith #if defined(PETSC_USE_INFO) 821c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 822596b8d2eSBarry Smith if (HT[i]) {j++;} 823c38d4ed2SBarry Smith } 8241e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 825187ce0cbSSatish Balay #endif 8263a40ed3dSBarry Smith PetscFunctionReturn(0); 827596b8d2eSBarry Smith } 82857b952d6SSatish Balay 8294a2ae208SSatish Balay #undef __FUNCT__ 8304a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 831dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 832bbb85fb3SSatish Balay { 833bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 834dfbe8321SBarry Smith PetscErrorCode ierr; 835b24ad042SBarry Smith PetscInt nstash,reallocs; 836bbb85fb3SSatish Balay InsertMode addv; 837bbb85fb3SSatish Balay 838bbb85fb3SSatish Balay PetscFunctionBegin; 839bbb85fb3SSatish Balay if (baij->donotstash) { 840bbb85fb3SSatish Balay PetscFunctionReturn(0); 841bbb85fb3SSatish Balay } 842bbb85fb3SSatish Balay 843bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8447adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 845bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 847bbb85fb3SSatish Balay } 848bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 849bbb85fb3SSatish Balay 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 8511e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8528798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8531e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85446680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8551e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 856bbb85fb3SSatish Balay PetscFunctionReturn(0); 857bbb85fb3SSatish Balay } 858bbb85fb3SSatish Balay 8594a2ae208SSatish Balay #undef __FUNCT__ 8604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 861dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 862bbb85fb3SSatish Balay { 863bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86491c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8656849ba73SBarry Smith PetscErrorCode ierr; 866b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 867e44c0bd4SBarry Smith PetscInt *row,*col; 868e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8693eda8832SBarry Smith MatScalar *val; 870bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 871b24ad042SBarry Smith PetscMPIInt n; 872bbb85fb3SSatish Balay 87391c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 874bbb85fb3SSatish Balay PetscFunctionBegin; 875bbb85fb3SSatish Balay if (!baij->donotstash) { 876a2d1c673SSatish Balay while (1) { 8778798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 878a2d1c673SSatish Balay if (!flg) break; 879a2d1c673SSatish Balay 880bbb85fb3SSatish Balay for (i=0; i<n;) { 881bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 882bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 883bbb85fb3SSatish Balay if (j < n) ncols = j-i; 884bbb85fb3SSatish Balay else ncols = n-i; 885bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 887bbb85fb3SSatish Balay i = j; 888bbb85fb3SSatish Balay } 889bbb85fb3SSatish Balay } 8908798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 891a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 892a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 893a2d1c673SSatish Balay restore the original flags */ 894a2d1c673SSatish Balay r1 = baij->roworiented; 895a2d1c673SSatish Balay r2 = a->roworiented; 89691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8977c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8987c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89991c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 900a2d1c673SSatish Balay while (1) { 9018798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 902a2d1c673SSatish Balay if (!flg) break; 903a2d1c673SSatish Balay 904a2d1c673SSatish Balay for (i=0; i<n;) { 905a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 906a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 907a2d1c673SSatish Balay if (j < n) ncols = j-i; 908a2d1c673SSatish Balay else ncols = n-i; 90997e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 910a2d1c673SSatish Balay i = j; 911a2d1c673SSatish Balay } 912a2d1c673SSatish Balay } 9138798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 914a2d1c673SSatish Balay baij->roworiented = r1; 915a2d1c673SSatish Balay a->roworiented = r2; 91691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 917bbb85fb3SSatish Balay } 918bbb85fb3SSatish Balay 919bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 921bbb85fb3SSatish Balay 922bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 923bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 924bbb85fb3SSatish Balay /* 925bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 926bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 927bbb85fb3SSatish Balay */ 928bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9297adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 930bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 931bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay } 934bbb85fb3SSatish Balay 935bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 936bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 937bbb85fb3SSatish Balay } 93891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 939bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 941bbb85fb3SSatish Balay 9426cf91177SBarry Smith #if defined(PETSC_USE_INFO) 943bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9441e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 945bbb85fb3SSatish Balay baij->ht_total_ct = 0; 946bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 947bbb85fb3SSatish Balay } 948bbb85fb3SSatish Balay #endif 949bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 950bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 951bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 952bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 953bbb85fb3SSatish Balay } 954bbb85fb3SSatish Balay 955606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 956606d414cSSatish Balay baij->rowvalues = 0; 957bbb85fb3SSatish Balay PetscFunctionReturn(0); 958bbb85fb3SSatish Balay } 95957b952d6SSatish Balay 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9626849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96357b952d6SSatish Balay { 96457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 967899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 96832077d6dSBarry Smith PetscTruth iascii,isdraw; 969b0a32e0cSBarry Smith PetscViewer sviewer; 970f3ef73ceSBarry Smith PetscViewerFormat format; 97157b952d6SSatish Balay 972d64ed03dSBarry Smith PetscFunctionBegin; 97332077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 974fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97532077d6dSBarry Smith if (iascii) { 976b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 977456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9784e220ebcSLois Curfman McInnes MatInfo info; 9797adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 980d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 982899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 983899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 984d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 986d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 988b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 99057b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9913a40ed3dSBarry Smith PetscFunctionReturn(0); 992fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9943a40ed3dSBarry Smith PetscFunctionReturn(0); 99504929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99604929863SHong Zhang PetscFunctionReturn(0); 99757b952d6SSatish Balay } 99857b952d6SSatish Balay } 99957b952d6SSatish Balay 10000f5bd95cSBarry Smith if (isdraw) { 1001b0a32e0cSBarry Smith PetscDraw draw; 100257b952d6SSatish Balay PetscTruth isnull; 1003b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1004b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100557b952d6SSatish Balay } 100657b952d6SSatish Balay 100757b952d6SSatish Balay if (size == 1) { 10087adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100957b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1010d64ed03dSBarry Smith } else { 101157b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101257b952d6SSatish Balay Mat A; 101357b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1014899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10153eda8832SBarry Smith MatScalar *a; 101657b952d6SSatish Balay 1017f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1018f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10197adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 102057b952d6SSatish Balay if (!rank) { 1021f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1022d64ed03dSBarry Smith } else { 1023f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102457b952d6SSatish Balay } 1025f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1026899cda47SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102857b952d6SSatish Balay 102957b952d6SSatish Balay /* copy over the A part */ 103057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1032b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103357b952d6SSatish Balay 103457b952d6SSatish Balay for (i=0; i<mbs; i++) { 1035899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103657b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103757b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1038899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103957b952d6SSatish Balay for (k=0; k<bs; k++) { 104097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1041cee3aa6bSSatish Balay col++; a += bs; 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay } 104557b952d6SSatish Balay /* copy over the B part */ 104657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104857b952d6SSatish Balay for (i=0; i<mbs; i++) { 1049899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 105057b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105157b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105257b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105357b952d6SSatish Balay for (k=0; k<bs; k++) { 105497e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1055cee3aa6bSSatish Balay col++; a += bs; 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 105857b952d6SSatish Balay } 1059606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10616d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106255843e3eSBarry Smith /* 106355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1064b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106555843e3eSBarry Smith */ 1066b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1067f14a1c24SBarry Smith if (!rank) { 10687adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10696831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 107057b952d6SSatish Balay } 1071b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107257b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107357b952d6SSatish Balay } 10743a40ed3dSBarry Smith PetscFunctionReturn(0); 107557b952d6SSatish Balay } 107657b952d6SSatish Balay 10774a2ae208SSatish Balay #undef __FUNCT__ 10784a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1079dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 108057b952d6SSatish Balay { 1081dfbe8321SBarry Smith PetscErrorCode ierr; 108232077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108357b952d6SSatish Balay 1084d64ed03dSBarry Smith PetscFunctionBegin; 108532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1086fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1087b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1088fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108932077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10907b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10915cd90555SBarry Smith } else { 109279a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109357b952d6SSatish Balay } 10943a40ed3dSBarry Smith PetscFunctionReturn(0); 109557b952d6SSatish Balay } 109657b952d6SSatish Balay 10974a2ae208SSatish Balay #undef __FUNCT__ 10984a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1099dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 110079bdfe76SSatish Balay { 110179bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1102dfbe8321SBarry Smith PetscErrorCode ierr; 110379bdfe76SSatish Balay 1104d64ed03dSBarry Smith PetscFunctionBegin; 1105aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1106899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 110779bdfe76SSatish Balay #endif 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11098798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111179bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1112aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11139c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111448e59246SSatish Balay #else 111505b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111648e59246SSatish Balay #endif 111705b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1118606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1119606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 112005b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112205b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1123899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1124606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1125901853e0SKris Buschelman 1126dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1130901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1131aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1133901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11343a40ed3dSBarry Smith PetscFunctionReturn(0); 113579bdfe76SSatish Balay } 113679bdfe76SSatish Balay 11374a2ae208SSatish Balay #undef __FUNCT__ 11384a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1139dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1140cee3aa6bSSatish Balay { 1141cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1142dfbe8321SBarry Smith PetscErrorCode ierr; 1143b24ad042SBarry Smith PetscInt nt; 1144cee3aa6bSSatish Balay 1145d64ed03dSBarry Smith PetscFunctionBegin; 1146e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1147899cda47SBarry Smith if (nt != A->cmap.n) { 114829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114947b4a8eaSLois Curfman McInnes } 1150e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1151899cda47SBarry Smith if (nt != A->rmap.n) { 115229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115347b4a8eaSLois Curfman McInnes } 1154ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1155f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1156ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1157f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11583a40ed3dSBarry Smith PetscFunctionReturn(0); 1159cee3aa6bSSatish Balay } 1160cee3aa6bSSatish Balay 11614a2ae208SSatish Balay #undef __FUNCT__ 11624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1163dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1164cee3aa6bSSatish Balay { 1165cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1166dfbe8321SBarry Smith PetscErrorCode ierr; 1167d64ed03dSBarry Smith 1168d64ed03dSBarry Smith PetscFunctionBegin; 1169ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1170f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1171ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1172f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11733a40ed3dSBarry Smith PetscFunctionReturn(0); 1174cee3aa6bSSatish Balay } 1175cee3aa6bSSatish Balay 11764a2ae208SSatish Balay #undef __FUNCT__ 11774a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1178dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1179cee3aa6bSSatish Balay { 1180cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1181dfbe8321SBarry Smith PetscErrorCode ierr; 1182a5ff213dSBarry Smith PetscTruth merged; 1183cee3aa6bSSatish Balay 1184d64ed03dSBarry Smith PetscFunctionBegin; 1185a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1186cee3aa6bSSatish Balay /* do nondiagonal part */ 11877c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1188a5ff213dSBarry Smith if (!merged) { 1189cee3aa6bSSatish Balay /* send it on its way */ 1190ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1191cee3aa6bSSatish Balay /* do local part */ 11927c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1193cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1194a5ff213dSBarry Smith /* inserted in yy until the next line */ 1195ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1196a5ff213dSBarry Smith } else { 1197a5ff213dSBarry Smith /* do local part */ 1198a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1199a5ff213dSBarry Smith /* send it on its way */ 1200ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1201a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1202ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1203a5ff213dSBarry Smith } 12043a40ed3dSBarry Smith PetscFunctionReturn(0); 1205cee3aa6bSSatish Balay } 1206cee3aa6bSSatish Balay 12074a2ae208SSatish Balay #undef __FUNCT__ 12084a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1209dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1210cee3aa6bSSatish Balay { 1211cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1212dfbe8321SBarry Smith PetscErrorCode ierr; 1213cee3aa6bSSatish Balay 1214d64ed03dSBarry Smith PetscFunctionBegin; 1215cee3aa6bSSatish Balay /* do nondiagonal part */ 12167c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1217cee3aa6bSSatish Balay /* send it on its way */ 1218ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1219cee3aa6bSSatish Balay /* do local part */ 12207c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1221cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1222cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1223cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1224ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12253a40ed3dSBarry Smith PetscFunctionReturn(0); 1226cee3aa6bSSatish Balay } 1227cee3aa6bSSatish Balay 1228cee3aa6bSSatish Balay /* 1229cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1230cee3aa6bSSatish Balay diagonal block 1231cee3aa6bSSatish Balay */ 12324a2ae208SSatish Balay #undef __FUNCT__ 12334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1234dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1235cee3aa6bSSatish Balay { 1236cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1237dfbe8321SBarry Smith PetscErrorCode ierr; 1238d64ed03dSBarry Smith 1239d64ed03dSBarry Smith PetscFunctionBegin; 1240899cda47SBarry Smith if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12413a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12423a40ed3dSBarry Smith PetscFunctionReturn(0); 1243cee3aa6bSSatish Balay } 1244cee3aa6bSSatish Balay 12454a2ae208SSatish Balay #undef __FUNCT__ 12464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1247f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1248cee3aa6bSSatish Balay { 1249cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1250dfbe8321SBarry Smith PetscErrorCode ierr; 1251d64ed03dSBarry Smith 1252d64ed03dSBarry Smith PetscFunctionBegin; 1253f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1254f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12553a40ed3dSBarry Smith PetscFunctionReturn(0); 1256cee3aa6bSSatish Balay } 1257026e39d0SSatish Balay 12584a2ae208SSatish Balay #undef __FUNCT__ 12594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1260b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1261acdf5bf4SSatish Balay { 1262acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12646849ba73SBarry Smith PetscErrorCode ierr; 1265899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1266899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1267899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1268acdf5bf4SSatish Balay 1269d64ed03dSBarry Smith PetscFunctionBegin; 1270abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1271acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1272acdf5bf4SSatish Balay 1273acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1274acdf5bf4SSatish Balay /* 1275acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1276acdf5bf4SSatish Balay */ 1277acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1278b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1279bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1280acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1281acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1282acdf5bf4SSatish Balay } 1283b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1284b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1285acdf5bf4SSatish Balay } 1286acdf5bf4SSatish Balay 128729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1288d9d09a02SSatish Balay lrow = row - brstart; 1289acdf5bf4SSatish Balay 1290acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1291acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1292acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1293f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1294f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1295acdf5bf4SSatish Balay nztot = nzA + nzB; 1296acdf5bf4SSatish Balay 1297acdf5bf4SSatish Balay cmap = mat->garray; 1298acdf5bf4SSatish Balay if (v || idx) { 1299acdf5bf4SSatish Balay if (nztot) { 1300acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1301b24ad042SBarry Smith PetscInt imark = -1; 1302acdf5bf4SSatish Balay if (v) { 1303acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1304acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1305d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1306acdf5bf4SSatish Balay else break; 1307acdf5bf4SSatish Balay } 1308acdf5bf4SSatish Balay imark = i; 1309acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1310acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1311acdf5bf4SSatish Balay } 1312acdf5bf4SSatish Balay if (idx) { 1313acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1314acdf5bf4SSatish Balay if (imark > -1) { 1315acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1316bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1317acdf5bf4SSatish Balay } 1318acdf5bf4SSatish Balay } else { 1319acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1320d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1321d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1322acdf5bf4SSatish Balay else break; 1323acdf5bf4SSatish Balay } 1324acdf5bf4SSatish Balay imark = i; 1325acdf5bf4SSatish Balay } 1326d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1327d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1328acdf5bf4SSatish Balay } 1329d64ed03dSBarry Smith } else { 1330d212a18eSSatish Balay if (idx) *idx = 0; 1331d212a18eSSatish Balay if (v) *v = 0; 1332d212a18eSSatish Balay } 1333acdf5bf4SSatish Balay } 1334acdf5bf4SSatish Balay *nz = nztot; 1335f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1336f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13373a40ed3dSBarry Smith PetscFunctionReturn(0); 1338acdf5bf4SSatish Balay } 1339acdf5bf4SSatish Balay 13404a2ae208SSatish Balay #undef __FUNCT__ 13414a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1342b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1343acdf5bf4SSatish Balay { 1344acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1345d64ed03dSBarry Smith 1346d64ed03dSBarry Smith PetscFunctionBegin; 1347abc0a331SBarry Smith if (!baij->getrowactive) { 134829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1349acdf5bf4SSatish Balay } 1350acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13513a40ed3dSBarry Smith PetscFunctionReturn(0); 1352acdf5bf4SSatish Balay } 1353acdf5bf4SSatish Balay 13544a2ae208SSatish Balay #undef __FUNCT__ 13554a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1356dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135758667388SSatish Balay { 135858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1359dfbe8321SBarry Smith PetscErrorCode ierr; 1360d64ed03dSBarry Smith 1361d64ed03dSBarry Smith PetscFunctionBegin; 136258667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136358667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13643a40ed3dSBarry Smith PetscFunctionReturn(0); 136558667388SSatish Balay } 13660ac07820SSatish Balay 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1369dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13700ac07820SSatish Balay { 13714e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13724e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1373dfbe8321SBarry Smith PetscErrorCode ierr; 1374329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13750ac07820SSatish Balay 1376d64ed03dSBarry Smith PetscFunctionBegin; 1377899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 13784e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13790e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1380de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13814e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13820e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1383de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13840ac07820SSatish Balay if (flag == MAT_LOCAL) { 13854e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13864e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13874e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13884e220ebcSLois Curfman McInnes info->memory = isend[3]; 13894e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13900ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13917adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13924e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13934e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13944e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13954e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13964e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13970ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13987adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13994e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14004e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14014e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14024e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14034e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1404d41123aaSBarry Smith } else { 140577431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14060ac07820SSatish Balay } 1407899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1408899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1409899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1410899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 14114e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14124e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14134e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14143a40ed3dSBarry Smith PetscFunctionReturn(0); 14150ac07820SSatish Balay } 14160ac07820SSatish Balay 14174a2ae208SSatish Balay #undef __FUNCT__ 14184a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14194e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 142058667388SSatish Balay { 142158667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1422dfbe8321SBarry Smith PetscErrorCode ierr; 142358667388SSatish Balay 1424d64ed03dSBarry Smith PetscFunctionBegin; 142512c028f9SKris Buschelman switch (op) { 1426512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142812c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 142912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14304e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14314e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143212c028f9SKris Buschelman break; 143312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14344e0d8c25SBarry Smith a->roworiented = flg; 14354e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14364e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143712c028f9SKris Buschelman break; 14384e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1439290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 144012c028f9SKris Buschelman break; 144112c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14424e0d8c25SBarry Smith a->donotstash = flg; 144312c028f9SKris Buschelman break; 144412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14454e0d8c25SBarry Smith a->ht_flag = flg; 144612c028f9SKris Buschelman break; 144777e54ba9SKris Buschelman case MAT_SYMMETRIC: 144877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14492188ac68SBarry Smith case MAT_HERMITIAN: 14502188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14514e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 145277e54ba9SKris Buschelman break; 145312c028f9SKris Buschelman default: 1454ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1455d64ed03dSBarry Smith } 14563a40ed3dSBarry Smith PetscFunctionReturn(0); 145758667388SSatish Balay } 145858667388SSatish Balay 14594a2ae208SSatish Balay #undef __FUNCT__ 14604a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1461*fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14620ac07820SSatish Balay { 14630ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14640ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14650ac07820SSatish Balay Mat B; 1466dfbe8321SBarry Smith PetscErrorCode ierr; 1467899cda47SBarry Smith PetscInt M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col; 1468899cda47SBarry Smith PetscInt bs=A->rmap.bs,mbs=baij->mbs; 14693eda8832SBarry Smith MatScalar *a; 14700ac07820SSatish Balay 1471d64ed03dSBarry Smith PetscFunctionBegin; 1472*fc4dec0aSBarry Smith if (*matout == A && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1473*fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14747adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1475899cda47SBarry Smith ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr); 14767adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1477899cda47SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1478*fc4dec0aSBarry Smith } else { 1479*fc4dec0aSBarry Smith B = *matout; 1480*fc4dec0aSBarry Smith } 14810ac07820SSatish Balay 14820ac07820SSatish Balay /* copy over the A part */ 14830ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14840ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1485b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14860ac07820SSatish Balay 14870ac07820SSatish Balay for (i=0; i<mbs; i++) { 1488899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14890ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14900ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1491899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14920ac07820SSatish Balay for (k=0; k<bs; k++) { 149397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14940ac07820SSatish Balay col++; a += bs; 14950ac07820SSatish Balay } 14960ac07820SSatish Balay } 14970ac07820SSatish Balay } 14980ac07820SSatish Balay /* copy over the B part */ 14990ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15000ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15010ac07820SSatish Balay for (i=0; i<mbs; i++) { 1502899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 15030ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15040ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15050ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15060ac07820SSatish Balay for (k=0; k<bs; k++) { 150797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15080ac07820SSatish Balay col++; a += bs; 15090ac07820SSatish Balay } 15100ac07820SSatish Balay } 15110ac07820SSatish Balay } 1512606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15130ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15140ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15150ac07820SSatish Balay 1516*fc4dec0aSBarry Smith if (*matout != A) { 15170ac07820SSatish Balay *matout = B; 15180ac07820SSatish Balay } else { 1519273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15200ac07820SSatish Balay } 15213a40ed3dSBarry Smith PetscFunctionReturn(0); 15220ac07820SSatish Balay } 15230e95ebc0SSatish Balay 15244a2ae208SSatish Balay #undef __FUNCT__ 15254a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1526dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15270e95ebc0SSatish Balay { 152836c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152936c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1530dfbe8321SBarry Smith PetscErrorCode ierr; 1531b24ad042SBarry Smith PetscInt s1,s2,s3; 15320e95ebc0SSatish Balay 1533d64ed03dSBarry Smith PetscFunctionBegin; 153436c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153536c4a09eSSatish Balay if (rr) { 153636c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153729bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153836c4a09eSSatish Balay /* Overlap communication with computation. */ 1539ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 154036c4a09eSSatish Balay } 15410e95ebc0SSatish Balay if (ll) { 15420e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 154329bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1544a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15450e95ebc0SSatish Balay } 154636c4a09eSSatish Balay /* scale the diagonal block */ 154736c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154836c4a09eSSatish Balay 154936c4a09eSSatish Balay if (rr) { 155036c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1551ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1552a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 155336c4a09eSSatish Balay } 155436c4a09eSSatish Balay 15553a40ed3dSBarry Smith PetscFunctionReturn(0); 15560e95ebc0SSatish Balay } 15570e95ebc0SSatish Balay 15584a2ae208SSatish Balay #undef __FUNCT__ 15594a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1560f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15610ac07820SSatish Balay { 15620ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15636849ba73SBarry Smith PetscErrorCode ierr; 1564b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1565899cda47SBarry Smith PetscInt i,*owners = A->rmap.range; 1566b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1567b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15687adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1569357c27ecSBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap.rstart; 15707adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15710ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15720ac07820SSatish Balay MPI_Status recv_status,*send_status; 15736543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15746543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15756543fbbaSBarry Smith #endif 15760ac07820SSatish Balay 1577d64ed03dSBarry Smith PetscFunctionBegin; 15780ac07820SSatish Balay /* first count number of contributors to each processor */ 1579b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1580b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1581b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15826543fbbaSBarry Smith j = 0; 15830ac07820SSatish Balay for (i=0; i<N; i++) { 15846543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15856543fbbaSBarry Smith lastidx = idx; 15866543fbbaSBarry Smith for (; j<size; j++) { 1587357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15886543fbbaSBarry Smith nprocs[2*j]++; 15896543fbbaSBarry Smith nprocs[2*j+1] = 1; 15906543fbbaSBarry Smith owner[i] = j; 15916543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15926543fbbaSBarry Smith found = PETSC_TRUE; 15936543fbbaSBarry Smith #endif 15946543fbbaSBarry Smith break; 15950ac07820SSatish Balay } 15960ac07820SSatish Balay } 15976543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159829bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15996543fbbaSBarry Smith found = PETSC_FALSE; 16006543fbbaSBarry Smith #endif 16010ac07820SSatish Balay } 1602c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 16030ac07820SSatish Balay 16040ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1605c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16060ac07820SSatish Balay 16070ac07820SSatish Balay /* post receives: */ 1608b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1609b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16100ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1611b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16120ac07820SSatish Balay } 16130ac07820SSatish Balay 16140ac07820SSatish Balay /* do sends: 16150ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16160ac07820SSatish Balay the ith processor 16170ac07820SSatish Balay */ 1618b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1619b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1620b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16210ac07820SSatish Balay starts[0] = 0; 1622c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16230ac07820SSatish Balay for (i=0; i<N; i++) { 16240ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16250ac07820SSatish Balay } 16260ac07820SSatish Balay 16270ac07820SSatish Balay starts[0] = 0; 1628c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16290ac07820SSatish Balay count = 0; 16300ac07820SSatish Balay for (i=0; i<size; i++) { 1631c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1632b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16330ac07820SSatish Balay } 16340ac07820SSatish Balay } 1635606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16360ac07820SSatish Balay 1637357c27ecSBarry Smith base = owners[rank]; 16380ac07820SSatish Balay 16390ac07820SSatish Balay /* wait on receives */ 1640b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16410ac07820SSatish Balay source = lens + nrecvs; 16420ac07820SSatish Balay count = nrecvs; slen = 0; 16430ac07820SSatish Balay while (count) { 1644ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16450ac07820SSatish Balay /* unpack receives into our local space */ 1646b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16470ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16480ac07820SSatish Balay lens[imdex] = n; 16490ac07820SSatish Balay slen += n; 16500ac07820SSatish Balay count--; 16510ac07820SSatish Balay } 1652606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16530ac07820SSatish Balay 16540ac07820SSatish Balay /* move the data into the send scatter */ 1655b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16560ac07820SSatish Balay count = 0; 16570ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16580ac07820SSatish Balay values = rvalues + i*nmax; 16590ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16600ac07820SSatish Balay lrows[count++] = values[j] - base; 16610ac07820SSatish Balay } 16620ac07820SSatish Balay } 1663606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1664606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1665606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1666606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16670ac07820SSatish Balay 16680ac07820SSatish Balay /* actually zap the local rows */ 166972dacd9aSBarry Smith /* 167072dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1671a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 167272dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 167372dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167472dacd9aSBarry Smith 1675f4df32b1SMatthew Knepley Contributed by: Matthew Knepley 167672dacd9aSBarry Smith */ 16779c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1678f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1679899cda47SBarry Smith if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) { 1680f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1681f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1682f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1683fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 168429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1685512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16866525c446SSatish Balay } 1687a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1688a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1689f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1690a07cd24cSSatish Balay } 1691a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1692a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16939c957beeSSatish Balay } else { 1694f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1695a07cd24cSSatish Balay } 16969c957beeSSatish Balay 1697606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1698a07cd24cSSatish Balay 16990ac07820SSatish Balay /* wait on sends */ 17000ac07820SSatish Balay if (nsends) { 170182502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1702ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1703606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17040ac07820SSatish Balay } 1705606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1706606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17070ac07820SSatish Balay 17083a40ed3dSBarry Smith PetscFunctionReturn(0); 17090ac07820SSatish Balay } 171072dacd9aSBarry Smith 17114a2ae208SSatish Balay #undef __FUNCT__ 17124a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1713dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1714bb5a7306SBarry Smith { 1715bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1716dfbe8321SBarry Smith PetscErrorCode ierr; 1717d64ed03dSBarry Smith 1718d64ed03dSBarry Smith PetscFunctionBegin; 1719bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17203a40ed3dSBarry Smith PetscFunctionReturn(0); 1721bb5a7306SBarry Smith } 1722bb5a7306SBarry Smith 17236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17240ac07820SSatish Balay 17254a2ae208SSatish Balay #undef __FUNCT__ 17264a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1727dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17287fc3c18eSBarry Smith { 17297fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17307fc3c18eSBarry Smith Mat a,b,c,d; 17317fc3c18eSBarry Smith PetscTruth flg; 1732dfbe8321SBarry Smith PetscErrorCode ierr; 17337fc3c18eSBarry Smith 17347fc3c18eSBarry Smith PetscFunctionBegin; 17357fc3c18eSBarry Smith a = matA->A; b = matA->B; 17367fc3c18eSBarry Smith c = matB->A; d = matB->B; 17377fc3c18eSBarry Smith 17387fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1739abc0a331SBarry Smith if (flg) { 17407fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17417fc3c18eSBarry Smith } 17427adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17437fc3c18eSBarry Smith PetscFunctionReturn(0); 17447fc3c18eSBarry Smith } 17457fc3c18eSBarry Smith 17463c896bc6SHong Zhang #undef __FUNCT__ 17473c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17483c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17493c896bc6SHong Zhang { 17503c896bc6SHong Zhang PetscErrorCode ierr; 17513c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17523c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17533c896bc6SHong Zhang 17543c896bc6SHong Zhang PetscFunctionBegin; 17553c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17563c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17573c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17583c896bc6SHong Zhang } else { 17593c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17603c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17613c896bc6SHong Zhang } 17623c896bc6SHong Zhang PetscFunctionReturn(0); 17633c896bc6SHong Zhang } 1764273d9f13SBarry Smith 17654a2ae208SSatish Balay #undef __FUNCT__ 17664a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1767dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1768273d9f13SBarry Smith { 1769dfbe8321SBarry Smith PetscErrorCode ierr; 1770273d9f13SBarry Smith 1771273d9f13SBarry Smith PetscFunctionBegin; 17727edd0491SSatish Balay ierr = MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1773273d9f13SBarry Smith PetscFunctionReturn(0); 1774273d9f13SBarry Smith } 1775273d9f13SBarry Smith 17764fe895cdSHong Zhang #include "petscblaslapack.h" 17774fe895cdSHong Zhang #undef __FUNCT__ 17784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17804fe895cdSHong Zhang { 17814fe895cdSHong Zhang PetscErrorCode ierr; 17824fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17834fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17844fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17854fe895cdSHong Zhang 17864fe895cdSHong Zhang PetscFunctionBegin; 17874fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17884fe895cdSHong Zhang PetscScalar alpha = a; 17894fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17904fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17910805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17934fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17944fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17950805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17964fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17974fe895cdSHong Zhang } else { 17984fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17994fe895cdSHong Zhang } 18004fe895cdSHong Zhang PetscFunctionReturn(0); 18014fe895cdSHong Zhang } 18024fe895cdSHong Zhang 180399cafbc1SBarry Smith #undef __FUNCT__ 180499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 180599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180699cafbc1SBarry Smith { 180799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180899cafbc1SBarry Smith PetscErrorCode ierr; 180999cafbc1SBarry Smith 181099cafbc1SBarry Smith PetscFunctionBegin; 181199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 181299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 181399cafbc1SBarry Smith PetscFunctionReturn(0); 181499cafbc1SBarry Smith } 181599cafbc1SBarry Smith 181699cafbc1SBarry Smith #undef __FUNCT__ 181799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181999cafbc1SBarry Smith { 182099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 182199cafbc1SBarry Smith PetscErrorCode ierr; 182299cafbc1SBarry Smith 182399cafbc1SBarry Smith PetscFunctionBegin; 182499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 182599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182699cafbc1SBarry Smith PetscFunctionReturn(0); 182799cafbc1SBarry Smith } 182899cafbc1SBarry Smith 182979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1830cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1831cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1832cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1833cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1834cc2dc46cSBarry Smith MatMult_MPIBAIJ, 183597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 18367c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 18377c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1838cc2dc46cSBarry Smith 0, 1839cc2dc46cSBarry Smith 0, 1840cc2dc46cSBarry Smith 0, 184197304618SKris Buschelman /*10*/ 0, 1842cc2dc46cSBarry Smith 0, 1843cc2dc46cSBarry Smith 0, 1844cc2dc46cSBarry Smith 0, 1845cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 184697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 18477fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1848cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1849cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1850cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 185197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 1852cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1853cc2dc46cSBarry Smith 0, 1854cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1855cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 185697304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ, 1857cc2dc46cSBarry Smith 0, 1858cc2dc46cSBarry Smith 0, 1859cc2dc46cSBarry Smith 0, 1860cc2dc46cSBarry Smith 0, 186197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ, 1862273d9f13SBarry Smith 0, 1863cc2dc46cSBarry Smith 0, 1864cc2dc46cSBarry Smith 0, 1865cc2dc46cSBarry Smith 0, 186697304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ, 1867cc2dc46cSBarry Smith 0, 1868cc2dc46cSBarry Smith 0, 1869cc2dc46cSBarry Smith 0, 1870cc2dc46cSBarry Smith 0, 18714fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ, 1872cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1873cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1874cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 18753c896bc6SHong Zhang MatCopy_MPIBAIJ, 18768c07d4e3SBarry Smith /*45*/ 0, 1877cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1878cc2dc46cSBarry Smith 0, 1879cc2dc46cSBarry Smith 0, 1880cc2dc46cSBarry Smith 0, 1881521d7252SBarry Smith /*50*/ 0, 1882cc2dc46cSBarry Smith 0, 1883cc2dc46cSBarry Smith 0, 1884cc2dc46cSBarry Smith 0, 1885cc2dc46cSBarry Smith 0, 188697304618SKris Buschelman /*55*/ 0, 1887cc2dc46cSBarry Smith 0, 1888cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1889cc2dc46cSBarry Smith 0, 1890cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 189197304618SKris Buschelman /*60*/ 0, 1892f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 1893f14a1c24SBarry Smith MatView_MPIBAIJ, 1894357abbc8SBarry Smith 0, 18957843d17aSBarry Smith 0, 189697304618SKris Buschelman /*65*/ 0, 18977843d17aSBarry Smith 0, 18987843d17aSBarry Smith 0, 18997843d17aSBarry Smith 0, 19007843d17aSBarry Smith 0, 1901985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPIBAIJ, 19027843d17aSBarry Smith 0, 190397304618SKris Buschelman 0, 190497304618SKris Buschelman 0, 190597304618SKris Buschelman 0, 190697304618SKris Buschelman /*75*/ 0, 190797304618SKris Buschelman 0, 190897304618SKris Buschelman 0, 190997304618SKris Buschelman 0, 191097304618SKris Buschelman 0, 191197304618SKris Buschelman /*80*/ 0, 191297304618SKris Buschelman 0, 191397304618SKris Buschelman 0, 191497304618SKris Buschelman 0, 1915865e5f61SKris Buschelman MatLoad_MPIBAIJ, 1916865e5f61SKris Buschelman /*85*/ 0, 1917865e5f61SKris Buschelman 0, 1918865e5f61SKris Buschelman 0, 1919865e5f61SKris Buschelman 0, 1920865e5f61SKris Buschelman 0, 1921865e5f61SKris Buschelman /*90*/ 0, 1922865e5f61SKris Buschelman 0, 1923865e5f61SKris Buschelman 0, 1924865e5f61SKris Buschelman 0, 1925865e5f61SKris Buschelman 0, 1926865e5f61SKris Buschelman /*95*/ 0, 1927865e5f61SKris Buschelman 0, 1928865e5f61SKris Buschelman 0, 192999cafbc1SBarry Smith 0, 193099cafbc1SBarry Smith 0, 193199cafbc1SBarry Smith /*100*/0, 193299cafbc1SBarry Smith 0, 193399cafbc1SBarry Smith 0, 193499cafbc1SBarry Smith 0, 193599cafbc1SBarry Smith 0, 193699cafbc1SBarry Smith /*105*/0, 193799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 193899cafbc1SBarry Smith MatImaginaryPart_MPIBAIJ}; 193979bdfe76SSatish Balay 19405ef9f2a5SBarry Smith 1941e18c124aSSatish Balay EXTERN_C_BEGIN 19424a2ae208SSatish Balay #undef __FUNCT__ 19434a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 1944be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 19455ef9f2a5SBarry Smith { 19465ef9f2a5SBarry Smith PetscFunctionBegin; 19475ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 19485ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 19495ef9f2a5SBarry Smith PetscFunctionReturn(0); 19505ef9f2a5SBarry Smith } 1951e18c124aSSatish Balay EXTERN_C_END 195279bdfe76SSatish Balay 1953273d9f13SBarry Smith EXTERN_C_BEGIN 1954f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 1955d94109b8SHong Zhang EXTERN_C_END 1956d94109b8SHong Zhang 1957aac34f13SBarry Smith #undef __FUNCT__ 1958aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 1959b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[]) 1960aac34f13SBarry Smith { 1961899cda47SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)B->data; 1962899cda47SBarry Smith PetscInt m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d; 1963899cda47SBarry Smith PetscInt *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii; 1964aac34f13SBarry Smith const PetscInt *JJ; 1965aac34f13SBarry Smith PetscScalar *values; 1966aac34f13SBarry Smith PetscErrorCode ierr; 1967aac34f13SBarry Smith 1968aac34f13SBarry Smith PetscFunctionBegin; 1969aac34f13SBarry Smith #if defined(PETSC_OPT_g) 1970b7940d39SSatish Balay if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]); 1971aac34f13SBarry Smith #endif 1972aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 1973aac34f13SBarry Smith o_nnz = d_nnz + m; 1974aac34f13SBarry Smith 1975aac34f13SBarry Smith for (i=0; i<m; i++) { 1976b7940d39SSatish Balay nnz = Ii[i+1]- Ii[i]; 1977b7940d39SSatish Balay JJ = J + Ii[i]; 1978aac34f13SBarry Smith nnz_max = PetscMax(nnz_max,nnz); 1979aac34f13SBarry Smith #if defined(PETSC_OPT_g) 1980aac34f13SBarry Smith if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz); 1981aac34f13SBarry Smith #endif 1982aac34f13SBarry Smith for (j=0; j<nnz; j++) { 1983aac34f13SBarry Smith if (*JJ >= cstart) break; 1984aac34f13SBarry Smith JJ++; 1985aac34f13SBarry Smith } 1986aac34f13SBarry Smith d = 0; 1987aac34f13SBarry Smith for (; j<nnz; j++) { 1988aac34f13SBarry Smith if (*JJ++ >= cend) break; 1989aac34f13SBarry Smith d++; 1990aac34f13SBarry Smith } 1991aac34f13SBarry Smith d_nnz[i] = d; 1992aac34f13SBarry Smith o_nnz[i] = nnz - d; 1993aac34f13SBarry Smith } 1994aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1995aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 1996aac34f13SBarry Smith 1997aac34f13SBarry Smith if (v) values = (PetscScalar*)v; 1998aac34f13SBarry Smith else { 1999aac34f13SBarry Smith ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2000aac34f13SBarry Smith ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2001aac34f13SBarry Smith } 2002aac34f13SBarry Smith 2003aac34f13SBarry Smith for (i=0; i<m; i++) { 2004aac34f13SBarry Smith ii = i + rstart; 2005b7940d39SSatish Balay nnz = Ii[i+1]- Ii[i]; 2006b7940d39SSatish Balay ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr); 2007aac34f13SBarry Smith } 2008aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2009aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2010aac34f13SBarry Smith 2011aac34f13SBarry Smith if (!v) { 2012aac34f13SBarry Smith ierr = PetscFree(values);CHKERRQ(ierr); 2013aac34f13SBarry Smith } 2014aac34f13SBarry Smith PetscFunctionReturn(0); 2015aac34f13SBarry Smith } 2016aac34f13SBarry Smith 2017aac34f13SBarry Smith #undef __FUNCT__ 2018aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2019aac34f13SBarry Smith /*@C 2020aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2021aac34f13SBarry Smith (the default parallel PETSc format). 2022aac34f13SBarry Smith 2023aac34f13SBarry Smith Collective on MPI_Comm 2024aac34f13SBarry Smith 2025aac34f13SBarry Smith Input Parameters: 2026aac34f13SBarry Smith + A - the matrix 2027aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2028aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2029aac34f13SBarry Smith - v - optional values in the matrix 2030aac34f13SBarry Smith 2031aac34f13SBarry Smith Level: developer 2032aac34f13SBarry Smith 2033aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2034aac34f13SBarry Smith 2035aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2036aac34f13SBarry Smith @*/ 2037be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2038aac34f13SBarry Smith { 2039aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2040aac34f13SBarry Smith 2041aac34f13SBarry Smith PetscFunctionBegin; 2042aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2043aac34f13SBarry Smith if (f) { 2044aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2045aac34f13SBarry Smith } 2046aac34f13SBarry Smith PetscFunctionReturn(0); 2047aac34f13SBarry Smith } 2048aac34f13SBarry Smith 2049d94109b8SHong Zhang EXTERN_C_BEGIN 20504a2ae208SSatish Balay #undef __FUNCT__ 2051a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2052be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2053a23d5eceSKris Buschelman { 2054a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2055dfbe8321SBarry Smith PetscErrorCode ierr; 2056b24ad042SBarry Smith PetscInt i; 2057a23d5eceSKris Buschelman 2058a23d5eceSKris Buschelman PetscFunctionBegin; 2059a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 20607adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 20618c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 20628c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2063a23d5eceSKris Buschelman 2064a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2065a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2066a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 206777431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 206877431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2069899cda47SBarry Smith 2070899cda47SBarry Smith B->rmap.bs = bs; 2071899cda47SBarry Smith B->cmap.bs = bs; 20726148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 20736148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 2074899cda47SBarry Smith 2075a23d5eceSKris Buschelman if (d_nnz) { 2076899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 207777431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2078a23d5eceSKris Buschelman } 2079a23d5eceSKris Buschelman } 2080a23d5eceSKris Buschelman if (o_nnz) { 2081899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 208277431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2083a23d5eceSKris Buschelman } 2084a23d5eceSKris Buschelman } 2085a23d5eceSKris Buschelman 2086a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2087a23d5eceSKris Buschelman b->bs2 = bs*bs; 2088899cda47SBarry Smith b->mbs = B->rmap.n/bs; 2089899cda47SBarry Smith b->nbs = B->cmap.n/bs; 2090899cda47SBarry Smith b->Mbs = B->rmap.N/bs; 2091899cda47SBarry Smith b->Nbs = B->cmap.N/bs; 2092a23d5eceSKris Buschelman 2093a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2094899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 2095a23d5eceSKris Buschelman } 2096899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 2097899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 2098899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 2099899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 2100a23d5eceSKris Buschelman 2101f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2102899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 21039c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 2104c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 210552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2106f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2107899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 21089c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2109c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 211052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 2111c60e587dSKris Buschelman 21127adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2113a23d5eceSKris Buschelman 2114a23d5eceSKris Buschelman PetscFunctionReturn(0); 2115a23d5eceSKris Buschelman } 2116a23d5eceSKris Buschelman EXTERN_C_END 2117a23d5eceSKris Buschelman 2118a23d5eceSKris Buschelman EXTERN_C_BEGIN 2119be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2120be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 212192b32695SKris Buschelman EXTERN_C_END 21225bf65638SKris Buschelman 21230bad9183SKris Buschelman /*MC 2124fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 21250bad9183SKris Buschelman 21260bad9183SKris Buschelman Options Database Keys: 21278c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 21288c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 21298c07d4e3SBarry Smith - -mat_use_hash_table <fact> 21300bad9183SKris Buschelman 21310bad9183SKris Buschelman Level: beginner 21320bad9183SKris Buschelman 21330bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 21340bad9183SKris Buschelman M*/ 21350bad9183SKris Buschelman 213692b32695SKris Buschelman EXTERN_C_BEGIN 2137a23d5eceSKris Buschelman #undef __FUNCT__ 21384a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2139be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2140273d9f13SBarry Smith { 2141273d9f13SBarry Smith Mat_MPIBAIJ *b; 2142dfbe8321SBarry Smith PetscErrorCode ierr; 2143273d9f13SBarry Smith PetscTruth flg; 2144273d9f13SBarry Smith 2145273d9f13SBarry Smith PetscFunctionBegin; 214638f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 214782502324SSatish Balay B->data = (void*)b; 214882502324SSatish Balay 2149085a36d4SBarry Smith 2150273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2151273d9f13SBarry Smith B->mapping = 0; 2152273d9f13SBarry Smith B->factor = 0; 2153273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2154273d9f13SBarry Smith 2155273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 21567adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 21577adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2158273d9f13SBarry Smith 2159273d9f13SBarry Smith /* build local table of row and column ownerships */ 2160899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2161273d9f13SBarry Smith 2162273d9f13SBarry Smith /* build cache for off array entries formed */ 21637adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2164273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2165273d9f13SBarry Smith b->colmap = PETSC_NULL; 2166273d9f13SBarry Smith b->garray = PETSC_NULL; 2167273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2168273d9f13SBarry Smith 2169273d9f13SBarry Smith /* stuff used in block assembly */ 2170273d9f13SBarry Smith b->barray = 0; 2171273d9f13SBarry Smith 2172273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2173273d9f13SBarry Smith b->lvec = 0; 2174273d9f13SBarry Smith b->Mvctx = 0; 2175273d9f13SBarry Smith 2176273d9f13SBarry Smith /* stuff for MatGetRow() */ 2177273d9f13SBarry Smith b->rowindices = 0; 2178273d9f13SBarry Smith b->rowvalues = 0; 2179273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2180273d9f13SBarry Smith 2181273d9f13SBarry Smith /* hash table stuff */ 2182273d9f13SBarry Smith b->ht = 0; 2183273d9f13SBarry Smith b->hd = 0; 2184273d9f13SBarry Smith b->ht_size = 0; 2185273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2186273d9f13SBarry Smith b->ht_fact = 0; 2187273d9f13SBarry Smith b->ht_total_ct = 0; 2188273d9f13SBarry Smith b->ht_insert_ct = 0; 2189273d9f13SBarry Smith 21907adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 21918c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2192273d9f13SBarry Smith if (flg) { 2193f6275e2eSBarry Smith PetscReal fact = 1.39; 21944e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 21958c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2196273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2197273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 21981e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2199273d9f13SBarry Smith } 22008c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 22018c07d4e3SBarry Smith 2202273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2203273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2204273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2205273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2206273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2207273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2208273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2209273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2210273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2211a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2212a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2213a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2214aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 221544ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 2216aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 221792b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 221892b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 221992b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 22205bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 22215bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 22225bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 222317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 2224273d9f13SBarry Smith PetscFunctionReturn(0); 2225273d9f13SBarry Smith } 2226273d9f13SBarry Smith EXTERN_C_END 2227273d9f13SBarry Smith 2228209238afSKris Buschelman /*MC 2229002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2230209238afSKris Buschelman 2231209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2232209238afSKris Buschelman and MATMPIBAIJ otherwise. 2233209238afSKris Buschelman 2234209238afSKris Buschelman Options Database Keys: 2235209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2236209238afSKris Buschelman 2237209238afSKris Buschelman Level: beginner 2238209238afSKris Buschelman 2239aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2240209238afSKris Buschelman M*/ 2241209238afSKris Buschelman 2242209238afSKris Buschelman EXTERN_C_BEGIN 2243209238afSKris Buschelman #undef __FUNCT__ 2244209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2245be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 2246dfbe8321SBarry Smith { 22476849ba73SBarry Smith PetscErrorCode ierr; 2248b24ad042SBarry Smith PetscMPIInt size; 2249209238afSKris Buschelman 2250209238afSKris Buschelman PetscFunctionBegin; 22517adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2252209238afSKris Buschelman if (size == 1) { 2253209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2254209238afSKris Buschelman } else { 2255209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2256209238afSKris Buschelman } 2257209238afSKris Buschelman PetscFunctionReturn(0); 2258209238afSKris Buschelman } 2259209238afSKris Buschelman EXTERN_C_END 2260209238afSKris Buschelman 22614a2ae208SSatish Balay #undef __FUNCT__ 22624a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2263273d9f13SBarry Smith /*@C 2264aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2265273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2266273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2267273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2268273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2269273d9f13SBarry Smith 2270273d9f13SBarry Smith Collective on Mat 2271273d9f13SBarry Smith 2272273d9f13SBarry Smith Input Parameters: 2273273d9f13SBarry Smith + A - the matrix 2274273d9f13SBarry Smith . bs - size of blockk 2275273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2276273d9f13SBarry Smith submatrix (same for all local rows) 2277273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2278273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2279273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2280273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2281273d9f13SBarry Smith submatrix (same for all local rows). 2282273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2283273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2284273d9f13SBarry Smith each block row) or PETSC_NULL. 2285273d9f13SBarry Smith 228649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2287273d9f13SBarry Smith 2288273d9f13SBarry Smith Options Database Keys: 22898c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 22908c07d4e3SBarry Smith - -mat_use_hash_table <fact> 2291273d9f13SBarry Smith 2292273d9f13SBarry Smith Notes: 2293273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2294273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2295273d9f13SBarry Smith 2296273d9f13SBarry Smith Storage Information: 2297273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2298273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2299273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2300273d9f13SBarry Smith local matrix (a rectangular submatrix). 2301273d9f13SBarry Smith 2302273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2303273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2304273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2305273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2306273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2307273d9f13SBarry Smith 2308273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2309273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2310273d9f13SBarry Smith 2311273d9f13SBarry Smith .vb 2312273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2313273d9f13SBarry Smith ------------------- 2314273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2315273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2316273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2317273d9f13SBarry Smith ------------------- 2318273d9f13SBarry Smith .ve 2319273d9f13SBarry Smith 2320273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2321273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2322273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2323273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2324273d9f13SBarry Smith 2325273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2326273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2327273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2328273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2329273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2330273d9f13SBarry Smith matrices. 2331273d9f13SBarry Smith 2332aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2333aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2334aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2335aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2336aa95bbe8SBarry Smith 2337273d9f13SBarry Smith Level: intermediate 2338273d9f13SBarry Smith 2339273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2340273d9f13SBarry Smith 2341aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 2342273d9f13SBarry Smith @*/ 2343be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2344273d9f13SBarry Smith { 2345b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2346273d9f13SBarry Smith 2347273d9f13SBarry Smith PetscFunctionBegin; 2348a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2349a23d5eceSKris Buschelman if (f) { 2350a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2351273d9f13SBarry Smith } 2352273d9f13SBarry Smith PetscFunctionReturn(0); 2353273d9f13SBarry Smith } 2354273d9f13SBarry Smith 23554a2ae208SSatish Balay #undef __FUNCT__ 23564a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 235779bdfe76SSatish Balay /*@C 235879bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 235979bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 236079bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 236179bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 236279bdfe76SSatish Balay performance can be increased by more than a factor of 50. 236379bdfe76SSatish Balay 2364db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2365db81eaa0SLois Curfman McInnes 236679bdfe76SSatish Balay Input Parameters: 2367db81eaa0SLois Curfman McInnes + comm - MPI communicator 236879bdfe76SSatish Balay . bs - size of blockk 236979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 237092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 237192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 237292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 237392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 237492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2375be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2376be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 237747a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 237879bdfe76SSatish Balay submatrix (same for all local rows) 237947a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 238092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2381db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 238247a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 238379bdfe76SSatish Balay submatrix (same for all local rows). 238447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 238592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 238692e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 238779bdfe76SSatish Balay 238879bdfe76SSatish Balay Output Parameter: 238979bdfe76SSatish Balay . A - the matrix 239079bdfe76SSatish Balay 2391db81eaa0SLois Curfman McInnes Options Database Keys: 23928c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 23938c07d4e3SBarry Smith - -mat_use_hash_table <fact> 23943ffaccefSLois Curfman McInnes 2395175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2396175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 2397175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 2398175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2399175b88e8SBarry Smith 2400b259b22eSLois Curfman McInnes Notes: 240149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 240249a6f317SBarry Smith 240347a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 240447a75d0bSBarry Smith 240579bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 240679bdfe76SSatish Balay (possibly both). 240779bdfe76SSatish Balay 2408be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2409be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2410be79a94dSBarry Smith 241179bdfe76SSatish Balay Storage Information: 241279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 241379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 241479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 241579bdfe76SSatish Balay local matrix (a rectangular submatrix). 241679bdfe76SSatish Balay 241779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 241879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 241979bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 242079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 242179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 242279bdfe76SSatish Balay 242379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 242479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 242579bdfe76SSatish Balay 2426db81eaa0SLois Curfman McInnes .vb 2427db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2428db81eaa0SLois Curfman McInnes ------------------- 2429db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2430db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2431db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2432db81eaa0SLois Curfman McInnes ------------------- 2433db81eaa0SLois Curfman McInnes .ve 243479bdfe76SSatish Balay 243579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 243679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 243779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 243857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 243979bdfe76SSatish Balay 2440d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2441d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 244279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 244392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 244492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 24456da5968aSLois Curfman McInnes matrices. 244679bdfe76SSatish Balay 2447027ccd11SLois Curfman McInnes Level: intermediate 2448027ccd11SLois Curfman McInnes 244992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 245079bdfe76SSatish Balay 2451aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 245279bdfe76SSatish Balay @*/ 2453be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 245479bdfe76SSatish Balay { 24556849ba73SBarry Smith PetscErrorCode ierr; 2456b24ad042SBarry Smith PetscMPIInt size; 245779bdfe76SSatish Balay 2458d64ed03dSBarry Smith PetscFunctionBegin; 2459f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2460f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2461d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2462273d9f13SBarry Smith if (size > 1) { 2463273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2464273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2465273d9f13SBarry Smith } else { 2466273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2467273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 24683914022bSBarry Smith } 24693a40ed3dSBarry Smith PetscFunctionReturn(0); 247079bdfe76SSatish Balay } 2471026e39d0SSatish Balay 24724a2ae208SSatish Balay #undef __FUNCT__ 24734a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 24746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 24750ac07820SSatish Balay { 24760ac07820SSatish Balay Mat mat; 24770ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2478dfbe8321SBarry Smith PetscErrorCode ierr; 2479b24ad042SBarry Smith PetscInt len=0; 24800ac07820SSatish Balay 2481d64ed03dSBarry Smith PetscFunctionBegin; 24820ac07820SSatish Balay *newmat = 0; 24837adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2484899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 24857adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24861d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 24877fff6886SHong Zhang 24884beb1cfeSHong Zhang mat->factor = matin->factor; 2489273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24900ac07820SSatish Balay mat->assembled = PETSC_TRUE; 24917fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24927fff6886SHong Zhang 2493273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 2494899cda47SBarry Smith mat->rmap.bs = matin->rmap.bs; 24950ac07820SSatish Balay a->bs2 = oldmat->bs2; 24960ac07820SSatish Balay a->mbs = oldmat->mbs; 24970ac07820SSatish Balay a->nbs = oldmat->nbs; 24980ac07820SSatish Balay a->Mbs = oldmat->Mbs; 24990ac07820SSatish Balay a->Nbs = oldmat->Nbs; 25000ac07820SSatish Balay 25017adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 25027adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2503899cda47SBarry Smith 25040ac07820SSatish Balay a->size = oldmat->size; 25050ac07820SSatish Balay a->rank = oldmat->rank; 2506aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2507aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2508aef5e8e0SSatish Balay a->rowindices = 0; 25090ac07820SSatish Balay a->rowvalues = 0; 25100ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 251130793edcSSatish Balay a->barray = 0; 2512899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2513899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2514899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2515899cda47SBarry Smith a->cendbs = oldmat->cendbs; 25160ac07820SSatish Balay 2517133cdb44SSatish Balay /* hash table stuff */ 2518133cdb44SSatish Balay a->ht = 0; 2519133cdb44SSatish Balay a->hd = 0; 2520133cdb44SSatish Balay a->ht_size = 0; 2521133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 252225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2523133cdb44SSatish Balay a->ht_total_ct = 0; 2524133cdb44SSatish Balay a->ht_insert_ct = 0; 2525133cdb44SSatish Balay 2526899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 25277adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 25287adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 25290ac07820SSatish Balay if (oldmat->colmap) { 2530aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 25310f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 253248e59246SSatish Balay #else 2533b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 253452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2535b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 253648e59246SSatish Balay #endif 25370ac07820SSatish Balay } else a->colmap = 0; 25384beb1cfeSHong Zhang 25390ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2540b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 254152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2542b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 25430ac07820SSatish Balay } else a->garray = 0; 25440ac07820SSatish Balay 25450ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 254652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 25470ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 254852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 25497fff6886SHong Zhang 25502e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 255152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 25522e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 255352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 25547adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 25550ac07820SSatish Balay *newmat = mat; 25564beb1cfeSHong Zhang 25573a40ed3dSBarry Smith PetscFunctionReturn(0); 25580ac07820SSatish Balay } 255957b952d6SSatish Balay 2560e090d566SSatish Balay #include "petscsys.h" 256157b952d6SSatish Balay 25624a2ae208SSatish Balay #undef __FUNCT__ 25634a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2564f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 256557b952d6SSatish Balay { 256657b952d6SSatish Balay Mat A; 25676849ba73SBarry Smith PetscErrorCode ierr; 2568b24ad042SBarry Smith int fd; 2569b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 257087828ca2SBarry Smith PetscScalar *vals,*buf; 257157b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 257257b952d6SSatish Balay MPI_Status status; 2573b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2574b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2575910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 2576167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 2577dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 2578910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 2579dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 258057b952d6SSatish Balay 2581d64ed03dSBarry Smith PetscFunctionBegin; 258277925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 25838c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 25848c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 258557b952d6SSatish Balay 2586d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2587d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 258857b952d6SSatish Balay if (!rank) { 2589b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2590e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2591552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 25926c5fab8fSBarry Smith } 2593d64ed03dSBarry Smith 2594b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 259557b952d6SSatish Balay M = header[1]; N = header[2]; 259657b952d6SSatish Balay 259729bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 259857b952d6SSatish Balay 259957b952d6SSatish Balay /* 260057b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 260157b952d6SSatish Balay divisible by the blocksize 260257b952d6SSatish Balay */ 260357b952d6SSatish Balay Mbs = M/bs; 2604dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 260557b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 260657b952d6SSatish Balay else Mbs++; 260757b952d6SSatish Balay if (extra_rows && !rank) { 26081e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 260957b952d6SSatish Balay } 2610537820f0SBarry Smith 261157b952d6SSatish Balay /* determine ownership of all rows */ 261257b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 261357b952d6SSatish Balay m = mbs*bs; 2614dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 2615b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 2616167e7480SBarry Smith 2617167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 2618167e7480SBarry Smith if (!rank) { 2619167e7480SBarry Smith mmax = rowners[1]; 2620167e7480SBarry Smith for (i=2; i<size; i++) { 2621167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 2622167e7480SBarry Smith } 2623ca02efcfSSatish Balay mmax*=bs; 2624167e7480SBarry Smith } else mmax = m; 2625167e7480SBarry Smith 262657b952d6SSatish Balay rowners[0] = 0; 2627cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2628cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 262957b952d6SSatish Balay rstart = rowners[rank]; 263057b952d6SSatish Balay rend = rowners[rank+1]; 263157b952d6SSatish Balay 263257b952d6SSatish Balay /* distribute row lengths to all processors */ 263319c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 263457b952d6SSatish Balay if (!rank) { 2635dc231df0SBarry Smith mend = m; 2636dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 2637dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 2638dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 2639dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2640b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2641b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2642dc231df0SBarry Smith for (j=0; j<m; j++) { 2643dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 2644dc231df0SBarry Smith } 2645dc231df0SBarry Smith for (i=1; i<size; i++) { 2646dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 2647dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 2648dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 2649dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 2650dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 2651dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 265257b952d6SSatish Balay procsnz[i] += rowlengths[j]; 265357b952d6SSatish Balay } 2654dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 265557b952d6SSatish Balay } 2656606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2657dc231df0SBarry Smith } else { 2658dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2659dc231df0SBarry Smith } 266057b952d6SSatish Balay 2661dc231df0SBarry Smith if (!rank) { 266257b952d6SSatish Balay /* determine max buffer needed and allocate it */ 26638a8e0b3aSBarry Smith maxnz = procsnz[0]; 2664cdc0ba36SBarry Smith for (i=1; i<size; i++) { 266557b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 266657b952d6SSatish Balay } 2667b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 266857b952d6SSatish Balay 266957b952d6SSatish Balay /* read in my part of the matrix column indices */ 267057b952d6SSatish Balay nz = procsnz[0]; 267119c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 267257b952d6SSatish Balay mycols = ibuf; 2673cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2674e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2675cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2676cee3aa6bSSatish Balay 267757b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 267857b952d6SSatish Balay for (i=1; i<size-1; i++) { 267957b952d6SSatish Balay nz = procsnz[i]; 2680e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2681b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 268257b952d6SSatish Balay } 268357b952d6SSatish Balay /* read in the stuff for the last proc */ 268457b952d6SSatish Balay if (size != 1) { 268557b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2686e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 268757b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2688b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 268957b952d6SSatish Balay } 2690606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2691d64ed03dSBarry Smith } else { 269257b952d6SSatish Balay /* determine buffer space needed for message */ 269357b952d6SSatish Balay nz = 0; 269457b952d6SSatish Balay for (i=0; i<m; i++) { 269557b952d6SSatish Balay nz += locrowlens[i]; 269657b952d6SSatish Balay } 269719c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 269857b952d6SSatish Balay mycols = ibuf; 269957b952d6SSatish Balay /* receive message of column indices*/ 2700b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2701b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 270229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 270357b952d6SSatish Balay } 270457b952d6SSatish Balay 270557b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2706dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 2707dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 2708dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2709dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2710dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 271157b952d6SSatish Balay rowcount = 0; nzcount = 0; 271257b952d6SSatish Balay for (i=0; i<mbs; i++) { 271357b952d6SSatish Balay dcount = 0; 271457b952d6SSatish Balay odcount = 0; 271557b952d6SSatish Balay for (j=0; j<bs; j++) { 271657b952d6SSatish Balay kmax = locrowlens[rowcount]; 271757b952d6SSatish Balay for (k=0; k<kmax; k++) { 271857b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 271957b952d6SSatish Balay if (!mask[tmp]) { 272057b952d6SSatish Balay mask[tmp] = 1; 272157b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 272257b952d6SSatish Balay else masked1[dcount++] = tmp; 272357b952d6SSatish Balay } 272457b952d6SSatish Balay } 272557b952d6SSatish Balay rowcount++; 272657b952d6SSatish Balay } 2727cee3aa6bSSatish Balay 272857b952d6SSatish Balay dlens[i] = dcount; 272957b952d6SSatish Balay odlens[i] = odcount; 2730cee3aa6bSSatish Balay 273157b952d6SSatish Balay /* zero out the mask elements we set */ 273257b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 273357b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 273457b952d6SSatish Balay } 2735cee3aa6bSSatish Balay 273657b952d6SSatish Balay /* create our matrix */ 2737f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2738f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 273978ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 274078ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 274178ae41b4SKris Buschelman 274257b952d6SSatish Balay if (!rank) { 274319c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 274457b952d6SSatish Balay /* read in my part of the matrix numerical values */ 274557b952d6SSatish Balay nz = procsnz[0]; 274657b952d6SSatish Balay vals = buf; 2747cee3aa6bSSatish Balay mycols = ibuf; 2748cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2749e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2750cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2751537820f0SBarry Smith 275257b952d6SSatish Balay /* insert into matrix */ 275357b952d6SSatish Balay jj = rstart*bs; 275457b952d6SSatish Balay for (i=0; i<m; i++) { 2755dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 275657b952d6SSatish Balay mycols += locrowlens[i]; 275757b952d6SSatish Balay vals += locrowlens[i]; 275857b952d6SSatish Balay jj++; 275957b952d6SSatish Balay } 276057b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 276157b952d6SSatish Balay for (i=1; i<size-1; i++) { 276257b952d6SSatish Balay nz = procsnz[i]; 276357b952d6SSatish Balay vals = buf; 2764e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 27657adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 276657b952d6SSatish Balay } 276757b952d6SSatish Balay /* the last proc */ 276857b952d6SSatish Balay if (size != 1){ 276957b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2770cee3aa6bSSatish Balay vals = buf; 2771e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 277257b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 27737adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 277457b952d6SSatish Balay } 2775606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2776d64ed03dSBarry Smith } else { 277757b952d6SSatish Balay /* receive numeric values */ 277819c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 277957b952d6SSatish Balay 278057b952d6SSatish Balay /* receive message of values*/ 278157b952d6SSatish Balay vals = buf; 2782cee3aa6bSSatish Balay mycols = ibuf; 27837adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2784ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 278529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 278657b952d6SSatish Balay 278757b952d6SSatish Balay /* insert into matrix */ 278857b952d6SSatish Balay jj = rstart*bs; 2789cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2790dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 279157b952d6SSatish Balay mycols += locrowlens[i]; 279257b952d6SSatish Balay vals += locrowlens[i]; 279357b952d6SSatish Balay jj++; 279457b952d6SSatish Balay } 279557b952d6SSatish Balay } 2796606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2797606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2798606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2799dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 2800dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 2801dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 28026d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28036d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 280478ae41b4SKris Buschelman 280578ae41b4SKris Buschelman *newmat = A; 28063a40ed3dSBarry Smith PetscFunctionReturn(0); 280757b952d6SSatish Balay } 280857b952d6SSatish Balay 28094a2ae208SSatish Balay #undef __FUNCT__ 28104a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2811133cdb44SSatish Balay /*@ 2812133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2813133cdb44SSatish Balay 2814133cdb44SSatish Balay Input Parameters: 2815133cdb44SSatish Balay . mat - the matrix 2816133cdb44SSatish Balay . fact - factor 2817133cdb44SSatish Balay 2818fee21e36SBarry Smith Collective on Mat 2819fee21e36SBarry Smith 28208c890885SBarry Smith Level: advanced 28218c890885SBarry Smith 2822133cdb44SSatish Balay Notes: 28238c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 2824133cdb44SSatish Balay 2825133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2826133cdb44SSatish Balay 2827133cdb44SSatish Balay .seealso: MatSetOption() 2828133cdb44SSatish Balay @*/ 2829be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2830133cdb44SSatish Balay { 2831dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 28325bf65638SKris Buschelman 28335bf65638SKris Buschelman PetscFunctionBegin; 28345bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 28355bf65638SKris Buschelman if (f) { 28365bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 28375bf65638SKris Buschelman } 28385bf65638SKris Buschelman PetscFunctionReturn(0); 28395bf65638SKris Buschelman } 28405bf65638SKris Buschelman 2841be1d678aSKris Buschelman EXTERN_C_BEGIN 28425bf65638SKris Buschelman #undef __FUNCT__ 28435bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 2844be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 28455bf65638SKris Buschelman { 284625fdafccSSatish Balay Mat_MPIBAIJ *baij; 2847133cdb44SSatish Balay 2848133cdb44SSatish Balay PetscFunctionBegin; 2849133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2850133cdb44SSatish Balay baij->ht_fact = fact; 2851133cdb44SSatish Balay PetscFunctionReturn(0); 2852133cdb44SSatish Balay } 2853be1d678aSKris Buschelman EXTERN_C_END 2854f2a5309cSSatish Balay 28554a2ae208SSatish Balay #undef __FUNCT__ 28564a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2857be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 2858f2a5309cSSatish Balay { 2859f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2860f2a5309cSSatish Balay PetscFunctionBegin; 2861f2a5309cSSatish Balay *Ad = a->A; 2862f2a5309cSSatish Balay *Ao = a->B; 2863195d93cdSBarry Smith *colmap = a->garray; 2864f2a5309cSSatish Balay PetscFunctionReturn(0); 2865f2a5309cSSatish Balay } 286685535b8eSBarry Smith 286785535b8eSBarry Smith /* 286885535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 286985535b8eSBarry Smith */ 287085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 287185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 287285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 287385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 287485535b8eSBarry Smith #endif 287585535b8eSBarry Smith 287685535b8eSBarry Smith #undef __FUNCT__ 287785535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 287885535b8eSBarry Smith /*@C 287985535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 288085535b8eSBarry Smith 288185535b8eSBarry Smith Collective on Mat 288285535b8eSBarry Smith 288385535b8eSBarry Smith Input Parameters: 288485535b8eSBarry Smith + mat - the matrix 288585535b8eSBarry Smith . min - number of input rows 288685535b8eSBarry Smith . im - input rows 288785535b8eSBarry Smith . nin - number of input columns 288885535b8eSBarry Smith . in - input columns 288985535b8eSBarry Smith . v - numerical values input 289085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 289185535b8eSBarry Smith 289285535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 289385535b8eSBarry Smith 289485535b8eSBarry Smith Level: advanced 289585535b8eSBarry Smith 289685535b8eSBarry Smith .seealso: MatSetValuesBlocked() 289785535b8eSBarry Smith @*/ 289885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 289985535b8eSBarry Smith { 290085535b8eSBarry Smith /* convert input arguments to C version */ 290185535b8eSBarry Smith Mat mat = *matin; 290285535b8eSBarry Smith PetscInt m = *min, n = *nin; 290385535b8eSBarry Smith InsertMode addv = *addvin; 290485535b8eSBarry Smith 290585535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 290685535b8eSBarry Smith const MatScalar *value; 290785535b8eSBarry Smith MatScalar *barray=baij->barray; 290885535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 290985535b8eSBarry Smith PetscErrorCode ierr; 291085535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 291185535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 291285535b8eSBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2; 291385535b8eSBarry Smith 291485535b8eSBarry Smith PetscFunctionBegin; 291585535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 291685535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 291785535b8eSBarry Smith mat->insertmode = addv; 291885535b8eSBarry Smith } 291985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 292085535b8eSBarry Smith else if (mat->insertmode != addv) { 292185535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 292285535b8eSBarry Smith } 292385535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 292485535b8eSBarry Smith #endif 292585535b8eSBarry Smith if (mat->assembled) { 292685535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 292785535b8eSBarry Smith mat->assembled = PETSC_FALSE; 292885535b8eSBarry Smith } 292985535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 293085535b8eSBarry Smith 293185535b8eSBarry Smith 293285535b8eSBarry Smith if(!barray) { 293385535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 293485535b8eSBarry Smith baij->barray = barray; 293585535b8eSBarry Smith } 293685535b8eSBarry Smith 293785535b8eSBarry Smith if (roworiented) { 293885535b8eSBarry Smith stepval = (n-1)*bs; 293985535b8eSBarry Smith } else { 294085535b8eSBarry Smith stepval = (m-1)*bs; 294185535b8eSBarry Smith } 294285535b8eSBarry Smith for (i=0; i<m; i++) { 294385535b8eSBarry Smith if (im[i] < 0) continue; 294485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 294585535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 294685535b8eSBarry Smith #endif 294785535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 294885535b8eSBarry Smith row = im[i] - rstart; 294985535b8eSBarry Smith for (j=0; j<n; j++) { 295085535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 295185535b8eSBarry Smith if ((roworiented) && (n == 1)) { 295285535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 295385535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 295485535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 295585535b8eSBarry Smith } else { /* Here a copy is required */ 295685535b8eSBarry Smith if (roworiented) { 295785535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 295885535b8eSBarry Smith } else { 295985535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 296085535b8eSBarry Smith } 296185535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 296285535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 296385535b8eSBarry Smith *barray++ = *value++; 296485535b8eSBarry Smith } 296585535b8eSBarry Smith } 296685535b8eSBarry Smith barray -=bs2; 296785535b8eSBarry Smith } 296885535b8eSBarry Smith 296985535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 297085535b8eSBarry Smith col = in[j] - cstart; 297197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 297285535b8eSBarry Smith } 297385535b8eSBarry Smith else if (in[j] < 0) continue; 297485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 297585535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 297685535b8eSBarry Smith #endif 297785535b8eSBarry Smith else { 297885535b8eSBarry Smith if (mat->was_assembled) { 297985535b8eSBarry Smith if (!baij->colmap) { 298085535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 298185535b8eSBarry Smith } 298285535b8eSBarry Smith 298385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 298485535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 298585535b8eSBarry Smith { PetscInt data; 298685535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 298785535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 298885535b8eSBarry Smith } 298985535b8eSBarry Smith #else 299085535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 299185535b8eSBarry Smith #endif 299285535b8eSBarry Smith #endif 299385535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 299485535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 299585535b8eSBarry Smith col = (col - 1)/bs; 299685535b8eSBarry Smith #else 299785535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 299885535b8eSBarry Smith #endif 299985535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 300085535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 300185535b8eSBarry Smith col = in[j]; 300285535b8eSBarry Smith } 300385535b8eSBarry Smith } 300485535b8eSBarry Smith else col = in[j]; 300597e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 300685535b8eSBarry Smith } 300785535b8eSBarry Smith } 300885535b8eSBarry Smith } else { 300985535b8eSBarry Smith if (!baij->donotstash) { 301085535b8eSBarry Smith if (roworiented) { 301185535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 301285535b8eSBarry Smith } else { 301385535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 301485535b8eSBarry Smith } 301585535b8eSBarry Smith } 301685535b8eSBarry Smith } 301785535b8eSBarry Smith } 301885535b8eSBarry Smith 301985535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 302085535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 302185535b8eSBarry Smith PetscFunctionReturn(0); 302285535b8eSBarry Smith } 3023