xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision fca92195c093e8a5faf0c844190ed016dcbb215a)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
164a2ae208SSatish Balay #undef __FUNCT__
17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
197843d17aSBarry Smith {
207843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
21dfbe8321SBarry Smith   PetscErrorCode ierr;
22985db425SBarry Smith   PetscInt       i,*idxb = 0;
2387828ca2SBarry Smith   PetscScalar    *va,*vb;
247843d17aSBarry Smith   Vec            vtmp;
257843d17aSBarry Smith 
267843d17aSBarry Smith   PetscFunctionBegin;
27985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
281ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
29985db425SBarry Smith   if (idx) {
30192daf7cSBarry Smith     for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;}
31985db425SBarry Smith   }
327843d17aSBarry Smith 
33d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
34d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
35985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
361ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
377843d17aSBarry Smith 
38d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++){
39d0f46423SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);}
407843d17aSBarry Smith   }
417843d17aSBarry Smith 
421ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
431ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
44985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
45ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
467843d17aSBarry Smith   PetscFunctionReturn(0);
477843d17aSBarry Smith }
487843d17aSBarry Smith 
497fc3c18eSBarry Smith EXTERN_C_BEGIN
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
537fc3c18eSBarry Smith {
547fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
55dfbe8321SBarry Smith   PetscErrorCode ierr;
567fc3c18eSBarry Smith 
577fc3c18eSBarry Smith   PetscFunctionBegin;
587fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
607fc3c18eSBarry Smith   PetscFunctionReturn(0);
617fc3c18eSBarry Smith }
627fc3c18eSBarry Smith EXTERN_C_END
637fc3c18eSBarry Smith 
647fc3c18eSBarry Smith EXTERN_C_BEGIN
654a2ae208SSatish Balay #undef __FUNCT__
664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
687fc3c18eSBarry Smith {
697fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
70dfbe8321SBarry Smith   PetscErrorCode ierr;
717fc3c18eSBarry Smith 
727fc3c18eSBarry Smith   PetscFunctionBegin;
737fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
757fc3c18eSBarry Smith   PetscFunctionReturn(0);
767fc3c18eSBarry Smith }
777fc3c18eSBarry Smith EXTERN_C_END
787fc3c18eSBarry Smith 
79537820f0SBarry Smith /*
80537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
8257b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
8357b952d6SSatish Balay    length of colmap equals the global matrix length.
8457b952d6SSatish Balay */
854a2ae208SSatish Balay #undef __FUNCT__
864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8857b952d6SSatish Balay {
8957b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9057b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
916849ba73SBarry Smith   PetscErrorCode ierr;
92d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9357b952d6SSatish Balay 
94d64ed03dSBarry Smith   PetscFunctionBegin;
95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
96f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9748e59246SSatish Balay   for (i=0; i<nbs; i++){
980f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
9948e59246SSatish Balay   }
10048e59246SSatish Balay #else
101b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10252e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
103b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10548e59246SSatish Balay #endif
1063a40ed3dSBarry Smith   PetscFunctionReturn(0);
10757b952d6SSatish Balay }
10857b952d6SSatish Balay 
10980c1aa95SSatish Balay #define CHUNKSIZE  10
11080c1aa95SSatish Balay 
111f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11280c1aa95SSatish Balay { \
11380c1aa95SSatish Balay  \
11480c1aa95SSatish Balay     brow = row/bs;  \
11580c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
116ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11780c1aa95SSatish Balay       bcol = col/bs; \
11880c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
119ab26458aSBarry Smith       low = 0; high = nrow; \
120ab26458aSBarry Smith       while (high-low > 3) { \
121ab26458aSBarry Smith         t = (low+high)/2; \
122ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
123ab26458aSBarry Smith         else              low  = t; \
124ab26458aSBarry Smith       } \
125ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12680c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12780c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12880c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
129eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
130eada6651SSatish Balay           else                    *bap  = value;  \
131ac7a638eSSatish Balay           goto a_noinsert; \
13280c1aa95SSatish Balay         } \
13380c1aa95SSatish Balay       } \
13489280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
135085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
136421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13780c1aa95SSatish Balay       N = nrow++ - 1;  \
13880c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
13980c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
14080c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1413eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14280c1aa95SSatish Balay       } \
1433eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14480c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14580c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
146ac7a638eSSatish Balay       a_noinsert:; \
14780c1aa95SSatish Balay     ailen[brow] = nrow; \
14880c1aa95SSatish Balay }
14957b952d6SSatish Balay 
150ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
151ac7a638eSSatish Balay { \
152ac7a638eSSatish Balay     brow = row/bs;  \
153ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
154ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
155ac7a638eSSatish Balay       bcol = col/bs; \
156ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
157ac7a638eSSatish Balay       low = 0; high = nrow; \
158ac7a638eSSatish Balay       while (high-low > 3) { \
159ac7a638eSSatish Balay         t = (low+high)/2; \
160ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
161ac7a638eSSatish Balay         else              low  = t; \
162ac7a638eSSatish Balay       } \
163ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
164ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
165ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
166ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
167ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
168ac7a638eSSatish Balay           else                    *bap  = value;  \
169ac7a638eSSatish Balay           goto b_noinsert; \
170ac7a638eSSatish Balay         } \
171ac7a638eSSatish Balay       } \
17289280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
173085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
174421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
175085a36d4SBarry Smith       CHKMEMQ;\
176ac7a638eSSatish Balay       N = nrow++ - 1;  \
177ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
178ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
179ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1803eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
181ac7a638eSSatish Balay       } \
1823eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
183ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
184ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
185ac7a638eSSatish Balay       b_noinsert:; \
186ac7a638eSSatish Balay     bilen[brow] = nrow; \
187ac7a638eSSatish Balay }
188ac7a638eSSatish Balay 
1894a2ae208SSatish Balay #undef __FUNCT__
1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19257b952d6SSatish Balay {
19357b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19493fea6afSBarry Smith   MatScalar      value;
195273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
196dfbe8321SBarry Smith   PetscErrorCode ierr;
197b24ad042SBarry Smith   PetscInt       i,j,row,col;
198d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
199d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
200d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
20157b952d6SSatish Balay 
202eada6651SSatish Balay   /* Some Variables required in the macro */
20380c1aa95SSatish Balay   Mat            A = baij->A;
20480c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
205b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2063eda8832SBarry Smith   MatScalar      *aa=a->a;
207ac7a638eSSatish Balay 
208ac7a638eSSatish Balay   Mat            B = baij->B;
209ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
210b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2113eda8832SBarry Smith   MatScalar      *ba=b->a;
212ac7a638eSSatish Balay 
213b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
214b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2153eda8832SBarry Smith   MatScalar      *ap,*bap;
21680c1aa95SSatish Balay 
217d64ed03dSBarry Smith   PetscFunctionBegin;
21871fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
21957b952d6SSatish Balay   for (i=0; i<m; i++) {
2205ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2212515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
222d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
223639f9d9dSBarry Smith #endif
22457b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22557b952d6SSatish Balay       row = im[i] - rstart_orig;
22657b952d6SSatish Balay       for (j=0; j<n; j++) {
22757b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22857b952d6SSatish Balay           col = in[j] - cstart_orig;
22957b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23180c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23273959e64SBarry Smith         } else if (in[j] < 0) continue;
2332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
234d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);}
235639f9d9dSBarry Smith #endif
23657b952d6SSatish Balay         else {
23757b952d6SSatish Balay           if (mat->was_assembled) {
238905e6a2fSBarry Smith             if (!baij->colmap) {
239905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
240905e6a2fSBarry Smith             }
241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2420f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
243bba1ac68SSatish Balay             col  = col - 1;
24448e59246SSatish Balay #else
245bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24648e59246SSatish Balay #endif
24757b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24857b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2498295de27SSatish Balay               col =  in[j];
2509bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2519bf004c3SSatish Balay               B = baij->B;
2529bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2539bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2549bf004c3SSatish Balay               ba=b->a;
255bba1ac68SSatish Balay             } else col += in[j]%bs;
2568295de27SSatish Balay           } else col = in[j];
25757b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25890da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25990da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
26057b952d6SSatish Balay         }
26157b952d6SSatish Balay       }
262d64ed03dSBarry Smith     } else {
26390f02eecSBarry Smith       if (!baij->donotstash) {
264ff2fd236SBarry Smith         if (roworiented) {
265b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
266ff2fd236SBarry Smith         } else {
267b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26857b952d6SSatish Balay         }
26957b952d6SSatish Balay       }
27057b952d6SSatish Balay     }
27190f02eecSBarry Smith   }
2723a40ed3dSBarry Smith   PetscFunctionReturn(0);
27357b952d6SSatish Balay }
27457b952d6SSatish Balay 
2754a2ae208SSatish Balay #undef __FUNCT__
27697e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
278ab26458aSBarry Smith {
279ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
280dd6ea824SBarry Smith   const PetscScalar *value;
281f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
282273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
283dfbe8321SBarry Smith   PetscErrorCode    ierr;
284899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
285899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
286d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
287ab26458aSBarry Smith 
288b16ae2b1SBarry Smith   PetscFunctionBegin;
28930793edcSSatish Balay   if(!barray) {
29082502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29182502324SSatish Balay     baij->barray = barray;
29230793edcSSatish Balay   }
29330793edcSSatish Balay 
294ab26458aSBarry Smith   if (roworiented) {
295ab26458aSBarry Smith     stepval = (n-1)*bs;
296ab26458aSBarry Smith   } else {
297ab26458aSBarry Smith     stepval = (m-1)*bs;
298ab26458aSBarry Smith   }
299ab26458aSBarry Smith   for (i=0; i<m; i++) {
3005ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
30277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
303ab26458aSBarry Smith #endif
304ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
305ab26458aSBarry Smith       row = im[i] - rstart;
306ab26458aSBarry Smith       for (j=0; j<n; j++) {
30715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
309f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
31015b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
311f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31215b57d14SSatish Balay         } else { /* Here a copy is required */
313ab26458aSBarry Smith           if (roworiented) {
314ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
315ab26458aSBarry Smith           } else {
316ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
317abef11f7SSatish Balay           }
31847513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
31947513183SBarry Smith             for (jj=0; jj<bs; jj++) {
32030793edcSSatish Balay               *barray++  = *value++;
32147513183SBarry Smith             }
32247513183SBarry Smith           }
32330793edcSSatish Balay           barray -=bs2;
32415b57d14SSatish Balay         }
325abef11f7SSatish Balay 
326abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
327abef11f7SSatish Balay           col  = in[j] - cstart;
32897e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
329ab26458aSBarry Smith         }
3305ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3312515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
33277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
333ab26458aSBarry Smith #endif
334ab26458aSBarry Smith         else {
335ab26458aSBarry Smith           if (mat->was_assembled) {
336ab26458aSBarry Smith             if (!baij->colmap) {
337ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
338ab26458aSBarry Smith             }
339a5eb4965SSatish Balay 
3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
341aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
342b24ad042SBarry Smith             { PetscInt data;
3430f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
34429bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
345fa46199cSSatish Balay             }
34648e59246SSatish Balay #else
34729bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
348a5eb4965SSatish Balay #endif
34948e59246SSatish Balay #endif
350aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3510f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
352fa46199cSSatish Balay             col  = (col - 1)/bs;
35348e59246SSatish Balay #else
354a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35548e59246SSatish Balay #endif
356ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
357ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
358ab26458aSBarry Smith               col =  in[j];
359ab26458aSBarry Smith             }
360ab26458aSBarry Smith           }
361ab26458aSBarry Smith           else col = in[j];
36297e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
363ab26458aSBarry Smith         }
364ab26458aSBarry Smith       }
365d64ed03dSBarry Smith     } else {
366ab26458aSBarry Smith       if (!baij->donotstash) {
367ff2fd236SBarry Smith         if (roworiented) {
3686fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
369ff2fd236SBarry Smith         } else {
3706fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
371ff2fd236SBarry Smith         }
372abef11f7SSatish Balay       }
373ab26458aSBarry Smith     }
374ab26458aSBarry Smith   }
3753a40ed3dSBarry Smith   PetscFunctionReturn(0);
376ab26458aSBarry Smith }
3776fa18ffdSBarry Smith 
3780bdbc534SSatish Balay #define HASH_KEY 0.6180339887
379b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
380b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
381b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3824a2ae208SSatish Balay #undef __FUNCT__
38397e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38497e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3850bdbc534SSatish Balay {
3860bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
387273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
388dfbe8321SBarry Smith   PetscErrorCode ierr;
389b24ad042SBarry Smith   PetscInt       i,j,row,col;
390d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
391d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,Nbs=baij->Nbs;
392d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
393329f5518SBarry Smith   PetscReal      tmp;
3943eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3952515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
396b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3974a15367fSSatish Balay #endif
3980bdbc534SSatish Balay 
3990bdbc534SSatish Balay   PetscFunctionBegin;
40071fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
4010bdbc534SSatish Balay   for (i=0; i<m; i++) {
4022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
40329bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
404d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4050bdbc534SSatish Balay #endif
4060bdbc534SSatish Balay       row = im[i];
407c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4080bdbc534SSatish Balay       for (j=0; j<n; j++) {
4090bdbc534SSatish Balay         col = in[j];
4106fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
411b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
412c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
413c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4140bdbc534SSatish Balay 
415c2760754SSatish Balay 
416c2760754SSatish Balay         idx = h1;
4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
418187ce0cbSSatish Balay         insert_ct++;
419187ce0cbSSatish Balay         total_ct++;
420187ce0cbSSatish Balay         if (HT[idx] != key) {
421187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
422187ce0cbSSatish Balay           if (idx == size) {
423187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
424187ce0cbSSatish Balay             if (idx == h1) {
42577431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
426187ce0cbSSatish Balay             }
427187ce0cbSSatish Balay           }
428187ce0cbSSatish Balay         }
429187ce0cbSSatish Balay #else
430c2760754SSatish Balay         if (HT[idx] != key) {
431c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
432c2760754SSatish Balay           if (idx == size) {
433c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
434c2760754SSatish Balay             if (idx == h1) {
43577431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
436c2760754SSatish Balay             }
437c2760754SSatish Balay           }
438c2760754SSatish Balay         }
439187ce0cbSSatish Balay #endif
440c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
441c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
442c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4430bdbc534SSatish Balay       }
4440bdbc534SSatish Balay     } else {
4450bdbc534SSatish Balay       if (!baij->donotstash) {
446ff2fd236SBarry Smith         if (roworiented) {
447b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
448ff2fd236SBarry Smith         } else {
449b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4500bdbc534SSatish Balay         }
4510bdbc534SSatish Balay       }
4520bdbc534SSatish Balay     }
4530bdbc534SSatish Balay   }
4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
455187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
456187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
457187ce0cbSSatish Balay #endif
4580bdbc534SSatish Balay   PetscFunctionReturn(0);
4590bdbc534SSatish Balay }
4600bdbc534SSatish Balay 
4614a2ae208SSatish Balay #undef __FUNCT__
46297e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46397e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4640bdbc534SSatish Balay {
4650bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
466273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
467dfbe8321SBarry Smith   PetscErrorCode    ierr;
468b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
469899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
470d0f46423SBarry Smith   PetscInt          rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
471b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
472329f5518SBarry Smith   PetscReal         tmp;
4733eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
474dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
476b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4774a15367fSSatish Balay #endif
4780bdbc534SSatish Balay 
479d0a41580SSatish Balay   PetscFunctionBegin;
480d0a41580SSatish Balay 
4810bdbc534SSatish Balay   if (roworiented) {
4820bdbc534SSatish Balay     stepval = (n-1)*bs;
4830bdbc534SSatish Balay   } else {
4840bdbc534SSatish Balay     stepval = (m-1)*bs;
4850bdbc534SSatish Balay   }
4860bdbc534SSatish Balay   for (i=0; i<m; i++) {
4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
48877431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
48977431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4900bdbc534SSatish Balay #endif
4910bdbc534SSatish Balay     row   = im[i];
492ab715e2cSSatish Balay     v_t   = v + i*nbs2;
493c2760754SSatish Balay     if (row >= rstart && row < rend) {
4940bdbc534SSatish Balay       for (j=0; j<n; j++) {
4950bdbc534SSatish Balay         col = in[j];
4960bdbc534SSatish Balay 
4970bdbc534SSatish Balay         /* Look up into the Hash Table */
498c2760754SSatish Balay         key = row*Nbs+col+1;
499c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5000bdbc534SSatish Balay 
501c2760754SSatish Balay         idx = h1;
5022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
503187ce0cbSSatish Balay         total_ct++;
504187ce0cbSSatish Balay         insert_ct++;
505187ce0cbSSatish Balay        if (HT[idx] != key) {
506187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
507187ce0cbSSatish Balay           if (idx == size) {
508187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
509187ce0cbSSatish Balay             if (idx == h1) {
51077431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
511187ce0cbSSatish Balay             }
512187ce0cbSSatish Balay           }
513187ce0cbSSatish Balay         }
514187ce0cbSSatish Balay #else
515c2760754SSatish Balay         if (HT[idx] != key) {
516c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
517c2760754SSatish Balay           if (idx == size) {
518c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
519c2760754SSatish Balay             if (idx == h1) {
52077431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
521c2760754SSatish Balay             }
522c2760754SSatish Balay           }
523c2760754SSatish Balay         }
524187ce0cbSSatish Balay #endif
525c2760754SSatish Balay         baij_a = HD[idx];
5260bdbc534SSatish Balay         if (roworiented) {
527c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
528187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
529187ce0cbSSatish Balay           value = v_t;
530187ce0cbSSatish Balay           v_t  += bs;
531fef45726SSatish Balay           if (addv == ADD_VALUES) {
532c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
533c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
534fef45726SSatish Balay                 baij_a[jj]  += *value++;
535b4cc0f5aSSatish Balay               }
536b4cc0f5aSSatish Balay             }
537fef45726SSatish Balay           } else {
538c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
539c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
540fef45726SSatish Balay                 baij_a[jj]  = *value++;
541fef45726SSatish Balay               }
542fef45726SSatish Balay             }
543fef45726SSatish Balay           }
5440bdbc534SSatish Balay         } else {
5450bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
546fef45726SSatish Balay           if (addv == ADD_VALUES) {
547b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5480bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
549fef45726SSatish Balay                 baij_a[jj]  += *value++;
550fef45726SSatish Balay               }
551fef45726SSatish Balay             }
552fef45726SSatish Balay           } else {
553fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
554fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
555fef45726SSatish Balay                 baij_a[jj]  = *value++;
556fef45726SSatish Balay               }
557b4cc0f5aSSatish Balay             }
5580bdbc534SSatish Balay           }
5590bdbc534SSatish Balay         }
5600bdbc534SSatish Balay       }
5610bdbc534SSatish Balay     } else {
5620bdbc534SSatish Balay       if (!baij->donotstash) {
5630bdbc534SSatish Balay         if (roworiented) {
5648798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5650bdbc534SSatish Balay         } else {
5668798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5670bdbc534SSatish Balay         }
5680bdbc534SSatish Balay       }
5690bdbc534SSatish Balay     }
5700bdbc534SSatish Balay   }
5712515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
572187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
573187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
574187ce0cbSSatish Balay #endif
5750bdbc534SSatish Balay   PetscFunctionReturn(0);
5760bdbc534SSatish Balay }
577133cdb44SSatish Balay 
5784a2ae208SSatish Balay #undef __FUNCT__
5794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
580b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
581d6de1c52SSatish Balay {
582d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5836849ba73SBarry Smith   PetscErrorCode ierr;
584d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
585d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
586d6de1c52SSatish Balay 
587133cdb44SSatish Balay   PetscFunctionBegin;
588d6de1c52SSatish Balay   for (i=0; i<m; i++) {
58997e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
590d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
591d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
592d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
593d6de1c52SSatish Balay       for (j=0; j<n; j++) {
59497e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
595d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
596d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
597d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59898dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
599d64ed03dSBarry Smith         } else {
600905e6a2fSBarry Smith           if (!baij->colmap) {
601905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
602905e6a2fSBarry Smith           }
603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6040f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
605fa46199cSSatish Balay           data --;
60648e59246SSatish Balay #else
60748e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60848e59246SSatish Balay #endif
60948e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
610d9d09a02SSatish Balay           else {
61148e59246SSatish Balay             col  = data + idxn[j]%bs;
61298dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
613d6de1c52SSatish Balay           }
614d6de1c52SSatish Balay         }
615d6de1c52SSatish Balay       }
616d64ed03dSBarry Smith     } else {
61729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
618d6de1c52SSatish Balay     }
619d6de1c52SSatish Balay   }
6203a40ed3dSBarry Smith  PetscFunctionReturn(0);
621d6de1c52SSatish Balay }
622d6de1c52SSatish Balay 
6234a2ae208SSatish Balay #undef __FUNCT__
6244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
625dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
626d6de1c52SSatish Balay {
627d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
628d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
629dfbe8321SBarry Smith   PetscErrorCode ierr;
630d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
631329f5518SBarry Smith   PetscReal      sum = 0.0;
6323eda8832SBarry Smith   MatScalar      *v;
633d6de1c52SSatish Balay 
634d64ed03dSBarry Smith   PetscFunctionBegin;
635d6de1c52SSatish Balay   if (baij->size == 1) {
636064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
637d6de1c52SSatish Balay   } else {
638d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
639d6de1c52SSatish Balay       v = amat->a;
6408a62d963SHong Zhang       nz = amat->nz*bs2;
6418a62d963SHong Zhang       for (i=0; i<nz; i++) {
642aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
643329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
644d6de1c52SSatish Balay #else
645d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
646d6de1c52SSatish Balay #endif
647d6de1c52SSatish Balay       }
648d6de1c52SSatish Balay       v = bmat->a;
6498a62d963SHong Zhang       nz = bmat->nz*bs2;
6508a62d963SHong Zhang       for (i=0; i<nz; i++) {
651aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
652329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
653d6de1c52SSatish Balay #else
654d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
655d6de1c52SSatish Balay #endif
656d6de1c52SSatish Balay       }
6577adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
658064f8208SBarry Smith       *nrm = sqrt(*nrm);
6598a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6608a62d963SHong Zhang       PetscReal *tmp,*tmp2;
661899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
662*fca92195SBarry Smith       ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr);
663d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6648a62d963SHong Zhang       v = amat->a; jj = amat->j;
6658a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6668a62d963SHong Zhang         for (j=0; j<bs; j++){
6678a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6688a62d963SHong Zhang           for (row=0; row<bs; row++){
6698a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6708a62d963SHong Zhang           }
6718a62d963SHong Zhang         }
6728a62d963SHong Zhang         jj++;
6738a62d963SHong Zhang       }
6748a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6758a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6768a62d963SHong Zhang         for (j=0; j<bs; j++){
6778a62d963SHong Zhang           col = bs*garray[*jj] + j;
6788a62d963SHong Zhang           for (row=0; row<bs; row++){
6798a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6808a62d963SHong Zhang           }
6818a62d963SHong Zhang         }
6828a62d963SHong Zhang         jj++;
6838a62d963SHong Zhang       }
684d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6858a62d963SHong Zhang       *nrm = 0.0;
686d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6878a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6888a62d963SHong Zhang       }
689*fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
6908a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
691577dd1f9SKris Buschelman       PetscReal *sums;
692577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
6938a62d963SHong Zhang       sum = 0.0;
6948a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6958a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6968a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6978a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6988a62d963SHong Zhang         for (i=0; i<nz; i++) {
6998a62d963SHong Zhang           for (col=0; col<bs; col++){
7008a62d963SHong Zhang             for (row=0; row<bs; row++){
7018a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7028a62d963SHong Zhang             }
7038a62d963SHong Zhang           }
7048a62d963SHong Zhang         }
7058a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7068a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7078a62d963SHong Zhang         for (i=0; i<nz; i++) {
7088a62d963SHong Zhang           for (col=0; col<bs; col++){
7098a62d963SHong Zhang             for (row=0; row<bs; row++){
7108a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7118a62d963SHong Zhang             }
7128a62d963SHong Zhang           }
7138a62d963SHong Zhang         }
7148a62d963SHong Zhang         for (row=0; row<bs; row++){
7158a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7168a62d963SHong Zhang         }
7178a62d963SHong Zhang       }
7187adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
719577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
720d64ed03dSBarry Smith     } else {
72129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
722d6de1c52SSatish Balay     }
723d64ed03dSBarry Smith   }
7243a40ed3dSBarry Smith   PetscFunctionReturn(0);
725d6de1c52SSatish Balay }
72657b952d6SSatish Balay 
727fef45726SSatish Balay /*
728fef45726SSatish Balay   Creates the hash table, and sets the table
729fef45726SSatish Balay   This table is created only once.
730fef45726SSatish Balay   If new entried need to be added to the matrix
731fef45726SSatish Balay   then the hash table has to be destroyed and
732fef45726SSatish Balay   recreated.
733fef45726SSatish Balay */
7344a2ae208SSatish Balay #undef __FUNCT__
7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
737596b8d2eSBarry Smith {
738596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
739596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
740596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
741b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7426849ba73SBarry Smith   PetscErrorCode ierr;
743*fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
744899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
745b24ad042SBarry Smith   PetscInt       *HT,key;
7463eda8832SBarry Smith   MatScalar      **HD;
747329f5518SBarry Smith   PetscReal      tmp;
7486cf91177SBarry Smith #if defined(PETSC_USE_INFO)
749b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7504a15367fSSatish Balay #endif
751fef45726SSatish Balay 
752d64ed03dSBarry Smith   PetscFunctionBegin;
753*fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
754fef45726SSatish Balay 
755*fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
756*fca92195SBarry Smith   ht_size       = baij->ht_size;
7570bdbc534SSatish Balay 
758fef45726SSatish Balay   /* Allocate Memory for Hash Table */
759*fca92195SBarry Smith   ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr);
760*fca92195SBarry Smith   ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr);
761*fca92195SBarry Smith   ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr);
762b9e4cc15SSatish Balay   HD   = baij->hd;
763a07cd24cSSatish Balay   HT   = baij->ht;
764b9e4cc15SSatish Balay 
765596b8d2eSBarry Smith   /* Loop Over A */
7660bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
767596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7680bdbc534SSatish Balay       row = i+rstart;
7690bdbc534SSatish Balay       col = aj[j]+cstart;
770596b8d2eSBarry Smith 
771187ce0cbSSatish Balay       key = row*Nbs + col + 1;
772*fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
773*fca92195SBarry Smith       for (k=0; k<ht_size; k++){
774*fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
775*fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
776*fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
777596b8d2eSBarry Smith           break;
7786cf91177SBarry Smith #if defined(PETSC_USE_INFO)
779187ce0cbSSatish Balay         } else {
780187ce0cbSSatish Balay           ct++;
781187ce0cbSSatish Balay #endif
782596b8d2eSBarry Smith         }
783187ce0cbSSatish Balay       }
7846cf91177SBarry Smith #if defined(PETSC_USE_INFO)
785187ce0cbSSatish Balay       if (k> max) max = k;
786187ce0cbSSatish Balay #endif
787596b8d2eSBarry Smith     }
788596b8d2eSBarry Smith   }
789596b8d2eSBarry Smith   /* Loop Over B */
7900bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
791596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7920bdbc534SSatish Balay       row = i+rstart;
7930bdbc534SSatish Balay       col = garray[bj[j]];
794187ce0cbSSatish Balay       key = row*Nbs + col + 1;
795*fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
796*fca92195SBarry Smith       for (k=0; k<ht_size; k++){
797*fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
798*fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
799*fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
800596b8d2eSBarry Smith           break;
8016cf91177SBarry Smith #if defined(PETSC_USE_INFO)
802187ce0cbSSatish Balay         } else {
803187ce0cbSSatish Balay           ct++;
804187ce0cbSSatish Balay #endif
805596b8d2eSBarry Smith         }
806187ce0cbSSatish Balay       }
8076cf91177SBarry Smith #if defined(PETSC_USE_INFO)
808187ce0cbSSatish Balay       if (k> max) max = k;
809187ce0cbSSatish Balay #endif
810596b8d2eSBarry Smith     }
811596b8d2eSBarry Smith   }
812596b8d2eSBarry Smith 
813596b8d2eSBarry Smith   /* Print Summary */
8146cf91177SBarry Smith #if defined(PETSC_USE_INFO)
815*fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
816596b8d2eSBarry Smith     if (HT[i]) {j++;}
817c38d4ed2SBarry Smith   }
8181e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
819187ce0cbSSatish Balay #endif
8203a40ed3dSBarry Smith   PetscFunctionReturn(0);
821596b8d2eSBarry Smith }
82257b952d6SSatish Balay 
8234a2ae208SSatish Balay #undef __FUNCT__
8244a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
825dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
826bbb85fb3SSatish Balay {
827bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
828dfbe8321SBarry Smith   PetscErrorCode ierr;
829b24ad042SBarry Smith   PetscInt       nstash,reallocs;
830bbb85fb3SSatish Balay   InsertMode     addv;
831bbb85fb3SSatish Balay 
832bbb85fb3SSatish Balay   PetscFunctionBegin;
833bbb85fb3SSatish Balay   if (baij->donotstash) {
834bbb85fb3SSatish Balay     PetscFunctionReturn(0);
835bbb85fb3SSatish Balay   }
836bbb85fb3SSatish Balay 
837bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8387adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
839bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
84029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
841bbb85fb3SSatish Balay   }
842bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
843bbb85fb3SSatish Balay 
844d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8451e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8468798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8471e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
84846680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8491e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
850bbb85fb3SSatish Balay   PetscFunctionReturn(0);
851bbb85fb3SSatish Balay }
852bbb85fb3SSatish Balay 
8534a2ae208SSatish Balay #undef __FUNCT__
8544a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
855dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
856bbb85fb3SSatish Balay {
857bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
85891c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8596849ba73SBarry Smith   PetscErrorCode ierr;
860b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
861e44c0bd4SBarry Smith   PetscInt       *row,*col;
862e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8633eda8832SBarry Smith   MatScalar      *val;
864bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
865b24ad042SBarry Smith   PetscMPIInt    n;
866bbb85fb3SSatish Balay 
86791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
868bbb85fb3SSatish Balay   PetscFunctionBegin;
869bbb85fb3SSatish Balay   if (!baij->donotstash) {
870a2d1c673SSatish Balay     while (1) {
8718798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
872a2d1c673SSatish Balay       if (!flg) break;
873a2d1c673SSatish Balay 
874bbb85fb3SSatish Balay       for (i=0; i<n;) {
875bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
876bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
877bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
878bbb85fb3SSatish Balay         else       ncols = n-i;
879bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
88097e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
881bbb85fb3SSatish Balay         i = j;
882bbb85fb3SSatish Balay       }
883bbb85fb3SSatish Balay     }
8848798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
885a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
886a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
887a2d1c673SSatish Balay        restore the original flags */
888a2d1c673SSatish Balay     r1 = baij->roworiented;
889a2d1c673SSatish Balay     r2 = a->roworiented;
89091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8917c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8927c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89391c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
894a2d1c673SSatish Balay     while (1) {
8958798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
896a2d1c673SSatish Balay       if (!flg) break;
897a2d1c673SSatish Balay 
898a2d1c673SSatish Balay       for (i=0; i<n;) {
899a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
900a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
901a2d1c673SSatish Balay         if (j < n) ncols = j-i;
902a2d1c673SSatish Balay         else       ncols = n-i;
90397e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
904a2d1c673SSatish Balay         i = j;
905a2d1c673SSatish Balay       }
906a2d1c673SSatish Balay     }
9078798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
908a2d1c673SSatish Balay     baij->roworiented = r1;
909a2d1c673SSatish Balay     a->roworiented    = r2;
91091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
911bbb85fb3SSatish Balay   }
912bbb85fb3SSatish Balay 
913bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
914bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
915bbb85fb3SSatish Balay 
916bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
917bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
918bbb85fb3SSatish Balay   /*
919bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
920bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
921bbb85fb3SSatish Balay   */
922bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9237adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
924bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
925bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
926bbb85fb3SSatish Balay     }
927bbb85fb3SSatish Balay   }
928bbb85fb3SSatish Balay 
929bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
930bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
931bbb85fb3SSatish Balay   }
93291c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
933bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
934bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
935bbb85fb3SSatish Balay 
9366cf91177SBarry Smith #if defined(PETSC_USE_INFO)
937bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9381e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
939bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
940bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
941bbb85fb3SSatish Balay   }
942bbb85fb3SSatish Balay #endif
943bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
944bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
945bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
946bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
947bbb85fb3SSatish Balay   }
948bbb85fb3SSatish Balay 
949*fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
950606d414cSSatish Balay   baij->rowvalues = 0;
951bbb85fb3SSatish Balay   PetscFunctionReturn(0);
952bbb85fb3SSatish Balay }
95357b952d6SSatish Balay 
9544a2ae208SSatish Balay #undef __FUNCT__
9554a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9566849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
95757b952d6SSatish Balay {
95857b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
959dfbe8321SBarry Smith   PetscErrorCode    ierr;
960b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
961d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
96232077d6dSBarry Smith   PetscTruth        iascii,isdraw;
963b0a32e0cSBarry Smith   PetscViewer       sviewer;
964f3ef73ceSBarry Smith   PetscViewerFormat format;
96557b952d6SSatish Balay 
966d64ed03dSBarry Smith   PetscFunctionBegin;
96732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
968fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
96932077d6dSBarry Smith   if (iascii) {
970b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
971456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9724e220ebcSLois Curfman McInnes       MatInfo info;
9737adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
974d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
97577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
976d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
977d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
978d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
97977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
980d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
98177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
982b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
98307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
98457b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9853a40ed3dSBarry Smith       PetscFunctionReturn(0);
986fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
98777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9883a40ed3dSBarry Smith       PetscFunctionReturn(0);
98904929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
99004929863SHong Zhang       PetscFunctionReturn(0);
99157b952d6SSatish Balay     }
99257b952d6SSatish Balay   }
99357b952d6SSatish Balay 
9940f5bd95cSBarry Smith   if (isdraw) {
995b0a32e0cSBarry Smith     PetscDraw       draw;
99657b952d6SSatish Balay     PetscTruth isnull;
997b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
998b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
99957b952d6SSatish Balay   }
100057b952d6SSatish Balay 
100157b952d6SSatish Balay   if (size == 1) {
10027adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
100357b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1004d64ed03dSBarry Smith   } else {
100557b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
100657b952d6SSatish Balay     Mat         A;
100757b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1008d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10093eda8832SBarry Smith     MatScalar   *a;
101057b952d6SSatish Balay 
1011f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1012f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10137adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
101457b952d6SSatish Balay     if (!rank) {
1015f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1016d64ed03dSBarry Smith     } else {
1017f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
101857b952d6SSatish Balay     }
1019f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1020d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
102152e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
102257b952d6SSatish Balay 
102357b952d6SSatish Balay     /* copy over the A part */
102457b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
102557b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1026b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
102757b952d6SSatish Balay 
102857b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1029899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
103057b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
103157b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1032899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
103357b952d6SSatish Balay         for (k=0; k<bs; k++) {
103497e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1035cee3aa6bSSatish Balay           col++; a += bs;
103657b952d6SSatish Balay         }
103757b952d6SSatish Balay       }
103857b952d6SSatish Balay     }
103957b952d6SSatish Balay     /* copy over the B part */
104057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
104157b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
104257b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1043899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104457b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
104557b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
104657b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
104757b952d6SSatish Balay         for (k=0; k<bs; k++) {
104897e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1049cee3aa6bSSatish Balay           col++; a += bs;
105057b952d6SSatish Balay         }
105157b952d6SSatish Balay       }
105257b952d6SSatish Balay     }
1053606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10546d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10556d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
105655843e3eSBarry Smith     /*
105755843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1058b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
105955843e3eSBarry Smith     */
1060b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1061f14a1c24SBarry Smith     if (!rank) {
10627adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10636831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
106457b952d6SSatish Balay     }
1065b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
106657b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
106757b952d6SSatish Balay   }
10683a40ed3dSBarry Smith   PetscFunctionReturn(0);
106957b952d6SSatish Balay }
107057b952d6SSatish Balay 
10714a2ae208SSatish Balay #undef __FUNCT__
10724a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1073dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
107457b952d6SSatish Balay {
1075dfbe8321SBarry Smith   PetscErrorCode ierr;
107632077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
107757b952d6SSatish Balay 
1078d64ed03dSBarry Smith   PetscFunctionBegin;
107932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1080fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1081b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1082fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
108332077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10847b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10855cd90555SBarry Smith   } else {
108679a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
108757b952d6SSatish Balay   }
10883a40ed3dSBarry Smith   PetscFunctionReturn(0);
108957b952d6SSatish Balay }
109057b952d6SSatish Balay 
10914a2ae208SSatish Balay #undef __FUNCT__
10924a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1093dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
109479bdfe76SSatish Balay {
109579bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1096dfbe8321SBarry Smith   PetscErrorCode ierr;
109779bdfe76SSatish Balay 
1098d64ed03dSBarry Smith   PetscFunctionBegin;
1099aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1100d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
110179bdfe76SSatish Balay #endif
11028798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
11038798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
110479bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
110579bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1106aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11079c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
110848e59246SSatish Balay #else
110905b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
111048e59246SSatish Balay #endif
111105b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1112606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1113606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1114*fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
111505b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1116*fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1117899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1118606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1119901853e0SKris Buschelman 
1120dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1121901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1122901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1123901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1124901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1125aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1126901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11283a40ed3dSBarry Smith   PetscFunctionReturn(0);
112979bdfe76SSatish Balay }
113079bdfe76SSatish Balay 
11314a2ae208SSatish Balay #undef __FUNCT__
11324a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1133dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1134cee3aa6bSSatish Balay {
1135cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1136dfbe8321SBarry Smith   PetscErrorCode ierr;
1137b24ad042SBarry Smith   PetscInt       nt;
1138cee3aa6bSSatish Balay 
1139d64ed03dSBarry Smith   PetscFunctionBegin;
1140e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1141d0f46423SBarry Smith   if (nt != A->cmap->n) {
114229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
114347b4a8eaSLois Curfman McInnes   }
1144e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1145d0f46423SBarry Smith   if (nt != A->rmap->n) {
114629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
114747b4a8eaSLois Curfman McInnes   }
1148ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1149f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1150ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1151f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11523a40ed3dSBarry Smith   PetscFunctionReturn(0);
1153cee3aa6bSSatish Balay }
1154cee3aa6bSSatish Balay 
11554a2ae208SSatish Balay #undef __FUNCT__
11564a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1158cee3aa6bSSatish Balay {
1159cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1160dfbe8321SBarry Smith   PetscErrorCode ierr;
1161d64ed03dSBarry Smith 
1162d64ed03dSBarry Smith   PetscFunctionBegin;
1163ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1164f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1165ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1166f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1168cee3aa6bSSatish Balay }
1169cee3aa6bSSatish Balay 
11704a2ae208SSatish Balay #undef __FUNCT__
11714a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1172dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1173cee3aa6bSSatish Balay {
1174cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1175dfbe8321SBarry Smith   PetscErrorCode ierr;
1176a5ff213dSBarry Smith   PetscTruth     merged;
1177cee3aa6bSSatish Balay 
1178d64ed03dSBarry Smith   PetscFunctionBegin;
1179a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1180cee3aa6bSSatish Balay   /* do nondiagonal part */
11817c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1182a5ff213dSBarry Smith   if (!merged) {
1183cee3aa6bSSatish Balay     /* send it on its way */
1184ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1185cee3aa6bSSatish Balay     /* do local part */
11867c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1187cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1188a5ff213dSBarry Smith     /* inserted in yy until the next line */
1189ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1190a5ff213dSBarry Smith   } else {
1191a5ff213dSBarry Smith     /* do local part */
1192a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1193a5ff213dSBarry Smith     /* send it on its way */
1194ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1195a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1196ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1197a5ff213dSBarry Smith   }
11983a40ed3dSBarry Smith   PetscFunctionReturn(0);
1199cee3aa6bSSatish Balay }
1200cee3aa6bSSatish Balay 
12014a2ae208SSatish Balay #undef __FUNCT__
12024a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1203dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1204cee3aa6bSSatish Balay {
1205cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1206dfbe8321SBarry Smith   PetscErrorCode ierr;
1207cee3aa6bSSatish Balay 
1208d64ed03dSBarry Smith   PetscFunctionBegin;
1209cee3aa6bSSatish Balay   /* do nondiagonal part */
12107c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1211cee3aa6bSSatish Balay   /* send it on its way */
1212ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1213cee3aa6bSSatish Balay   /* do local part */
12147c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1215cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1216cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1217cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1218ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1220cee3aa6bSSatish Balay }
1221cee3aa6bSSatish Balay 
1222cee3aa6bSSatish Balay /*
1223cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1224cee3aa6bSSatish Balay    diagonal block
1225cee3aa6bSSatish Balay */
12264a2ae208SSatish Balay #undef __FUNCT__
12274a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1228dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1229cee3aa6bSSatish Balay {
1230cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1231dfbe8321SBarry Smith   PetscErrorCode ierr;
1232d64ed03dSBarry Smith 
1233d64ed03dSBarry Smith   PetscFunctionBegin;
1234d0f46423SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12353a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1237cee3aa6bSSatish Balay }
1238cee3aa6bSSatish Balay 
12394a2ae208SSatish Balay #undef __FUNCT__
12404a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1241f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1242cee3aa6bSSatish Balay {
1243cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1244dfbe8321SBarry Smith   PetscErrorCode ierr;
1245d64ed03dSBarry Smith 
1246d64ed03dSBarry Smith   PetscFunctionBegin;
1247f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1248f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12493a40ed3dSBarry Smith   PetscFunctionReturn(0);
1250cee3aa6bSSatish Balay }
1251026e39d0SSatish Balay 
12524a2ae208SSatish Balay #undef __FUNCT__
12534a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1254b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1255acdf5bf4SSatish Balay {
1256acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
125787828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12586849ba73SBarry Smith   PetscErrorCode ierr;
1259d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1260d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1261899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1262acdf5bf4SSatish Balay 
1263d64ed03dSBarry Smith   PetscFunctionBegin;
1264*fca92195SBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1265abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1266acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1267acdf5bf4SSatish Balay 
1268acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1269acdf5bf4SSatish Balay     /*
1270acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1271acdf5bf4SSatish Balay     */
1272acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1273b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1274bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1275acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1276acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1277acdf5bf4SSatish Balay     }
1278*fca92195SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1279acdf5bf4SSatish Balay   }
1280d9d09a02SSatish Balay   lrow = row - brstart;
1281acdf5bf4SSatish Balay 
1282acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1283acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1284acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1285f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1286f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1287acdf5bf4SSatish Balay   nztot = nzA + nzB;
1288acdf5bf4SSatish Balay 
1289acdf5bf4SSatish Balay   cmap  = mat->garray;
1290acdf5bf4SSatish Balay   if (v  || idx) {
1291acdf5bf4SSatish Balay     if (nztot) {
1292acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1293b24ad042SBarry Smith       PetscInt imark = -1;
1294acdf5bf4SSatish Balay       if (v) {
1295acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1296acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1297d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1298acdf5bf4SSatish Balay           else break;
1299acdf5bf4SSatish Balay         }
1300acdf5bf4SSatish Balay         imark = i;
1301acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1302acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1303acdf5bf4SSatish Balay       }
1304acdf5bf4SSatish Balay       if (idx) {
1305acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1306acdf5bf4SSatish Balay         if (imark > -1) {
1307acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1308bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1309acdf5bf4SSatish Balay           }
1310acdf5bf4SSatish Balay         } else {
1311acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1312d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1313d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1314acdf5bf4SSatish Balay             else break;
1315acdf5bf4SSatish Balay           }
1316acdf5bf4SSatish Balay           imark = i;
1317acdf5bf4SSatish Balay         }
1318d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1319d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1320acdf5bf4SSatish Balay       }
1321d64ed03dSBarry Smith     } else {
1322d212a18eSSatish Balay       if (idx) *idx = 0;
1323d212a18eSSatish Balay       if (v)   *v   = 0;
1324d212a18eSSatish Balay     }
1325acdf5bf4SSatish Balay   }
1326acdf5bf4SSatish Balay   *nz = nztot;
1327f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1328f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13293a40ed3dSBarry Smith   PetscFunctionReturn(0);
1330acdf5bf4SSatish Balay }
1331acdf5bf4SSatish Balay 
13324a2ae208SSatish Balay #undef __FUNCT__
13334a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1334b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1335acdf5bf4SSatish Balay {
1336acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1337d64ed03dSBarry Smith 
1338d64ed03dSBarry Smith   PetscFunctionBegin;
1339abc0a331SBarry Smith   if (!baij->getrowactive) {
134029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1341acdf5bf4SSatish Balay   }
1342acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1344acdf5bf4SSatish Balay }
1345acdf5bf4SSatish Balay 
13464a2ae208SSatish Balay #undef __FUNCT__
13474a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1348dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
134958667388SSatish Balay {
135058667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1351dfbe8321SBarry Smith   PetscErrorCode ierr;
1352d64ed03dSBarry Smith 
1353d64ed03dSBarry Smith   PetscFunctionBegin;
135458667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
135558667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13563a40ed3dSBarry Smith   PetscFunctionReturn(0);
135758667388SSatish Balay }
13580ac07820SSatish Balay 
13594a2ae208SSatish Balay #undef __FUNCT__
13604a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1361dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13620ac07820SSatish Balay {
13634e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13644e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1365dfbe8321SBarry Smith   PetscErrorCode ierr;
1366329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13670ac07820SSatish Balay 
1368d64ed03dSBarry Smith   PetscFunctionBegin;
1369d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
13704e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13710e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1372de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13734e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13740e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1375de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13760ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13774e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13784e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13794e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13804e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13814e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13820ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13837adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13844e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13854e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13864e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13874e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13884e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13890ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13907adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13914e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13924e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13934e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13944e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13954e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1396d41123aaSBarry Smith   } else {
139777431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
13980ac07820SSatish Balay   }
13994e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14004e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14014e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14023a40ed3dSBarry Smith   PetscFunctionReturn(0);
14030ac07820SSatish Balay }
14040ac07820SSatish Balay 
14054a2ae208SSatish Balay #undef __FUNCT__
14064a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
14074e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
140858667388SSatish Balay {
140958667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1410dfbe8321SBarry Smith   PetscErrorCode ierr;
141158667388SSatish Balay 
1412d64ed03dSBarry Smith   PetscFunctionBegin;
141312c028f9SKris Buschelman   switch (op) {
1414512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
141512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
141628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1417a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
141812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14194e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14204e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
142112c028f9SKris Buschelman     break;
142212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14234e0d8c25SBarry Smith     a->roworiented = flg;
14244e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14254e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
142612c028f9SKris Buschelman     break;
14274e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1428290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
142912c028f9SKris Buschelman     break;
143012c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14314e0d8c25SBarry Smith     a->donotstash = flg;
143212c028f9SKris Buschelman     break;
143312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14344e0d8c25SBarry Smith     a->ht_flag = flg;
143512c028f9SKris Buschelman     break;
143677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
143777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14382188ac68SBarry Smith   case MAT_HERMITIAN:
14392188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14404e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
144177e54ba9SKris Buschelman     break;
144212c028f9SKris Buschelman   default:
1443ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1444d64ed03dSBarry Smith   }
14453a40ed3dSBarry Smith   PetscFunctionReturn(0);
144658667388SSatish Balay }
144758667388SSatish Balay 
14484a2ae208SSatish Balay #undef __FUNCT__
14494a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1450fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14510ac07820SSatish Balay {
14520ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14530ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14540ac07820SSatish Balay   Mat            B;
1455dfbe8321SBarry Smith   PetscErrorCode ierr;
1456d0f46423SBarry Smith   PetscInt       M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1457d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
14583eda8832SBarry Smith   MatScalar      *a;
14590ac07820SSatish Balay 
1460d64ed03dSBarry Smith   PetscFunctionBegin;
1461e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1462fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
14637adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1464d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
14657adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1466d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1467fc4dec0aSBarry Smith   } else {
1468fc4dec0aSBarry Smith     B = *matout;
1469fc4dec0aSBarry Smith   }
14700ac07820SSatish Balay 
14710ac07820SSatish Balay   /* copy over the A part */
14720ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14730ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1474b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14750ac07820SSatish Balay 
14760ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1477899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14780ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14790ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1480899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14810ac07820SSatish Balay       for (k=0; k<bs; k++) {
148297e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14830ac07820SSatish Balay         col++; a += bs;
14840ac07820SSatish Balay       }
14850ac07820SSatish Balay     }
14860ac07820SSatish Balay   }
14870ac07820SSatish Balay   /* copy over the B part */
14880ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
14890ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14900ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1491899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14920ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14930ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
14940ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
14950ac07820SSatish Balay       for (k=0; k<bs; k++) {
149697e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14970ac07820SSatish Balay         col++; a += bs;
14980ac07820SSatish Balay       }
14990ac07820SSatish Balay     }
15000ac07820SSatish Balay   }
1501606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15020ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15030ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15040ac07820SSatish Balay 
1505815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
15060ac07820SSatish Balay     *matout = B;
15070ac07820SSatish Balay   } else {
1508273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
15090ac07820SSatish Balay   }
15103a40ed3dSBarry Smith   PetscFunctionReturn(0);
15110ac07820SSatish Balay }
15120e95ebc0SSatish Balay 
15134a2ae208SSatish Balay #undef __FUNCT__
15144a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1515dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15160e95ebc0SSatish Balay {
151736c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
151836c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1519dfbe8321SBarry Smith   PetscErrorCode ierr;
1520b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15210e95ebc0SSatish Balay 
1522d64ed03dSBarry Smith   PetscFunctionBegin;
152336c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
152436c4a09eSSatish Balay   if (rr) {
152536c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
152629bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
152736c4a09eSSatish Balay     /* Overlap communication with computation. */
1528ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
152936c4a09eSSatish Balay   }
15300e95ebc0SSatish Balay   if (ll) {
15310e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
153229bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1533a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15340e95ebc0SSatish Balay   }
153536c4a09eSSatish Balay   /* scale  the diagonal block */
153636c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
153736c4a09eSSatish Balay 
153836c4a09eSSatish Balay   if (rr) {
153936c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1540ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1541a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
154236c4a09eSSatish Balay   }
154336c4a09eSSatish Balay 
15443a40ed3dSBarry Smith   PetscFunctionReturn(0);
15450e95ebc0SSatish Balay }
15460e95ebc0SSatish Balay 
15474a2ae208SSatish Balay #undef __FUNCT__
15484a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1549f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15500ac07820SSatish Balay {
15510ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15526849ba73SBarry Smith   PetscErrorCode ierr;
1553b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1554d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
1555b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1556b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15577adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1558d0f46423SBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap->rstart;
15597adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15600ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15610ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15626543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15636543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15646543fbbaSBarry Smith #endif
15650ac07820SSatish Balay 
1566d64ed03dSBarry Smith   PetscFunctionBegin;
15670ac07820SSatish Balay   /*  first count number of contributors to each processor */
1568b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1569b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1570b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15716543fbbaSBarry Smith   j = 0;
15720ac07820SSatish Balay   for (i=0; i<N; i++) {
15736543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15746543fbbaSBarry Smith     lastidx = idx;
15756543fbbaSBarry Smith     for (; j<size; j++) {
1576357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15776543fbbaSBarry Smith         nprocs[2*j]++;
15786543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15796543fbbaSBarry Smith         owner[i] = j;
15806543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15816543fbbaSBarry Smith         found = PETSC_TRUE;
15826543fbbaSBarry Smith #endif
15836543fbbaSBarry Smith         break;
15840ac07820SSatish Balay       }
15850ac07820SSatish Balay     }
15866543fbbaSBarry Smith #if defined(PETSC_DEBUG)
158729bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15886543fbbaSBarry Smith     found = PETSC_FALSE;
15896543fbbaSBarry Smith #endif
15900ac07820SSatish Balay   }
1591c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
15920ac07820SSatish Balay 
15930ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1594c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
15950ac07820SSatish Balay 
15960ac07820SSatish Balay   /* post receives:   */
1597b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1598b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
15990ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1600b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16010ac07820SSatish Balay   }
16020ac07820SSatish Balay 
16030ac07820SSatish Balay   /* do sends:
16040ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16050ac07820SSatish Balay      the ith processor
16060ac07820SSatish Balay   */
1607b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1608b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1609b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16100ac07820SSatish Balay   starts[0]  = 0;
1611c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16120ac07820SSatish Balay   for (i=0; i<N; i++) {
16130ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16140ac07820SSatish Balay   }
16150ac07820SSatish Balay 
16160ac07820SSatish Balay   starts[0] = 0;
1617c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16180ac07820SSatish Balay   count = 0;
16190ac07820SSatish Balay   for (i=0; i<size; i++) {
1620c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1621b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16220ac07820SSatish Balay     }
16230ac07820SSatish Balay   }
1624606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16250ac07820SSatish Balay 
1626357c27ecSBarry Smith   base = owners[rank];
16270ac07820SSatish Balay 
16280ac07820SSatish Balay   /*  wait on receives */
1629*fca92195SBarry Smith   ierr   = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr);
1630*fca92195SBarry Smith   count  = nrecvs;
1631*fca92195SBarry Smith   slen = 0;
16320ac07820SSatish Balay   while (count) {
1633ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16340ac07820SSatish Balay     /* unpack receives into our local space */
1635b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16360ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16370ac07820SSatish Balay     lens[imdex]    = n;
16380ac07820SSatish Balay     slen          += n;
16390ac07820SSatish Balay     count--;
16400ac07820SSatish Balay   }
1641606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16420ac07820SSatish Balay 
16430ac07820SSatish Balay   /* move the data into the send scatter */
1644b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16450ac07820SSatish Balay   count = 0;
16460ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16470ac07820SSatish Balay     values = rvalues + i*nmax;
16480ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16490ac07820SSatish Balay       lrows[count++] = values[j] - base;
16500ac07820SSatish Balay     }
16510ac07820SSatish Balay   }
1652606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1653*fca92195SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
1654606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1655606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16560ac07820SSatish Balay 
16570ac07820SSatish Balay   /* actually zap the local rows */
165872dacd9aSBarry Smith   /*
165972dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1660a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
166172dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
166272dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
166372dacd9aSBarry Smith 
166472dacd9aSBarry Smith   */
16659c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1666f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1667d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1668f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1669f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1670f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1671fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
167229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1673512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
16746525c446SSatish Balay     }
1675a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1676a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1677f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1678a07cd24cSSatish Balay     }
1679a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1680a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16819c957beeSSatish Balay   } else {
1682f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1683a07cd24cSSatish Balay   }
16849c957beeSSatish Balay 
1685606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1686a07cd24cSSatish Balay 
16870ac07820SSatish Balay   /* wait on sends */
16880ac07820SSatish Balay   if (nsends) {
168982502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1690ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1691606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
16920ac07820SSatish Balay   }
1693606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1694606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
16950ac07820SSatish Balay 
16963a40ed3dSBarry Smith   PetscFunctionReturn(0);
16970ac07820SSatish Balay }
169872dacd9aSBarry Smith 
16994a2ae208SSatish Balay #undef __FUNCT__
17004a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1701dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1702bb5a7306SBarry Smith {
1703bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1704dfbe8321SBarry Smith   PetscErrorCode ierr;
1705d64ed03dSBarry Smith 
1706d64ed03dSBarry Smith   PetscFunctionBegin;
1707bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1709bb5a7306SBarry Smith }
1710bb5a7306SBarry Smith 
17116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17120ac07820SSatish Balay 
17134a2ae208SSatish Balay #undef __FUNCT__
17144a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1715dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17167fc3c18eSBarry Smith {
17177fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17187fc3c18eSBarry Smith   Mat            a,b,c,d;
17197fc3c18eSBarry Smith   PetscTruth     flg;
1720dfbe8321SBarry Smith   PetscErrorCode ierr;
17217fc3c18eSBarry Smith 
17227fc3c18eSBarry Smith   PetscFunctionBegin;
17237fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17247fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17257fc3c18eSBarry Smith 
17267fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1727abc0a331SBarry Smith   if (flg) {
17287fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17297fc3c18eSBarry Smith   }
17307adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17317fc3c18eSBarry Smith   PetscFunctionReturn(0);
17327fc3c18eSBarry Smith }
17337fc3c18eSBarry Smith 
17343c896bc6SHong Zhang #undef __FUNCT__
17353c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17363c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17373c896bc6SHong Zhang {
17383c896bc6SHong Zhang   PetscErrorCode ierr;
17393c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17403c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17413c896bc6SHong Zhang 
17423c896bc6SHong Zhang   PetscFunctionBegin;
17433c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17443c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17453c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17463c896bc6SHong Zhang   } else {
17473c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17483c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17493c896bc6SHong Zhang   }
17503c896bc6SHong Zhang   PetscFunctionReturn(0);
17513c896bc6SHong Zhang }
1752273d9f13SBarry Smith 
17534a2ae208SSatish Balay #undef __FUNCT__
17544a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1755dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1756273d9f13SBarry Smith {
1757dfbe8321SBarry Smith   PetscErrorCode ierr;
1758273d9f13SBarry Smith 
1759273d9f13SBarry Smith   PetscFunctionBegin;
1760db4efbfdSBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1761273d9f13SBarry Smith   PetscFunctionReturn(0);
1762273d9f13SBarry Smith }
1763273d9f13SBarry Smith 
17644fe895cdSHong Zhang #include "petscblaslapack.h"
17654fe895cdSHong Zhang #undef __FUNCT__
17664fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17674fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17684fe895cdSHong Zhang {
17694fe895cdSHong Zhang   PetscErrorCode ierr;
17704fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17714fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17724fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17734fe895cdSHong Zhang 
17744fe895cdSHong Zhang   PetscFunctionBegin;
17754fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17764fe895cdSHong Zhang     PetscScalar alpha = a;
17774fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17784fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17790805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17804fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17814fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17824fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17830805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17844fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17854fe895cdSHong Zhang   } else {
17864fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17874fe895cdSHong Zhang   }
17884fe895cdSHong Zhang   PetscFunctionReturn(0);
17894fe895cdSHong Zhang }
17904fe895cdSHong Zhang 
179199cafbc1SBarry Smith #undef __FUNCT__
179241c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ"
179341c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs)
179441c166b1SJed Brown {
179541c166b1SJed Brown   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1796829b6ff0SJed Brown   PetscInt rbs,cbs;
179741c166b1SJed Brown   PetscErrorCode ierr;
179841c166b1SJed Brown 
179941c166b1SJed Brown   PetscFunctionBegin;
180041c166b1SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
180141c166b1SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
1802829b6ff0SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
1803829b6ff0SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1804829b6ff0SJed Brown   if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs);
1805829b6ff0SJed Brown   if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs);
180641c166b1SJed Brown   PetscFunctionReturn(0);
180741c166b1SJed Brown }
180841c166b1SJed Brown 
180941c166b1SJed Brown #undef __FUNCT__
181099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
181199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
181299cafbc1SBarry Smith {
181399cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
181499cafbc1SBarry Smith   PetscErrorCode ierr;
181599cafbc1SBarry Smith 
181699cafbc1SBarry Smith   PetscFunctionBegin;
181799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
181899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
181999cafbc1SBarry Smith   PetscFunctionReturn(0);
182099cafbc1SBarry Smith }
182199cafbc1SBarry Smith 
182299cafbc1SBarry Smith #undef __FUNCT__
182399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
182499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
182599cafbc1SBarry Smith {
182699cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
182799cafbc1SBarry Smith   PetscErrorCode ierr;
182899cafbc1SBarry Smith 
182999cafbc1SBarry Smith   PetscFunctionBegin;
183099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
183199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
183299cafbc1SBarry Smith   PetscFunctionReturn(0);
183399cafbc1SBarry Smith }
183499cafbc1SBarry Smith 
183582094794SBarry Smith #undef __FUNCT__
183682094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
18374aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
18384aa3045dSJed Brown {
18394aa3045dSJed Brown   PetscErrorCode ierr;
18404aa3045dSJed Brown   IS             iscol_local;
18414aa3045dSJed Brown   PetscInt       csize;
18424aa3045dSJed Brown 
18434aa3045dSJed Brown   PetscFunctionBegin;
18444aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1845b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1846b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1847b79d0421SJed Brown     if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1848b79d0421SJed Brown   } else {
18494aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1850b79d0421SJed Brown   }
18514aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1852b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1853b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
18544aa3045dSJed Brown     ierr = ISDestroy(iscol_local);CHKERRQ(ierr);
1855b79d0421SJed Brown   }
18564aa3045dSJed Brown   PetscFunctionReturn(0);
18574aa3045dSJed Brown }
18584aa3045dSJed Brown 
18594aa3045dSJed Brown #undef __FUNCT__
18604aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
186182094794SBarry Smith /*
186282094794SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqBAIJ
186382094794SBarry Smith   in local and then by concatenating the local matrices the end result.
186482094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
186582094794SBarry Smith */
18664aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
186782094794SBarry Smith {
186882094794SBarry Smith   PetscErrorCode ierr;
186982094794SBarry Smith   PetscMPIInt    rank,size;
187082094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
187182094794SBarry Smith   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
187282094794SBarry Smith   Mat            *local,M,Mreuse;
187382094794SBarry Smith   MatScalar      *vwork,*aa;
187482094794SBarry Smith   MPI_Comm       comm = ((PetscObject)mat)->comm;
187582094794SBarry Smith   Mat_SeqBAIJ    *aij;
187682094794SBarry Smith 
187782094794SBarry Smith 
187882094794SBarry Smith   PetscFunctionBegin;
187982094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
188082094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
188182094794SBarry Smith 
188282094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
188382094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
188482094794SBarry Smith     if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
188582094794SBarry Smith     local = &Mreuse;
188682094794SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
188782094794SBarry Smith   } else {
188882094794SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
188982094794SBarry Smith     Mreuse = *local;
189082094794SBarry Smith     ierr   = PetscFree(local);CHKERRQ(ierr);
189182094794SBarry Smith   }
189282094794SBarry Smith 
189382094794SBarry Smith   /*
189482094794SBarry Smith       m - number of local rows
189582094794SBarry Smith       n - number of columns (same on all processors)
189682094794SBarry Smith       rstart - first row in new global matrix generated
189782094794SBarry Smith   */
189882094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
189982094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
190082094794SBarry Smith   m    = m/bs;
190182094794SBarry Smith   n    = n/bs;
190282094794SBarry Smith 
190382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
190482094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
190582094794SBarry Smith     ii  = aij->i;
190682094794SBarry Smith     jj  = aij->j;
190782094794SBarry Smith 
190882094794SBarry Smith     /*
190982094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
191082094794SBarry Smith         portions of the matrix in order to do correct preallocation
191182094794SBarry Smith     */
191282094794SBarry Smith 
191382094794SBarry Smith     /* first get start and end of "diagonal" columns */
191482094794SBarry Smith     if (csize == PETSC_DECIDE) {
191582094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
191682094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
191782094794SBarry Smith 	nlocal = m;
191882094794SBarry Smith       } else {
191982094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
192082094794SBarry Smith       }
192182094794SBarry Smith     } else {
192282094794SBarry Smith       nlocal = csize/bs;
192382094794SBarry Smith     }
192482094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
192582094794SBarry Smith     rstart = rend - nlocal;
192682094794SBarry Smith     if (rank == size - 1 && rend != n) {
192782094794SBarry Smith       SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
192882094794SBarry Smith     }
192982094794SBarry Smith 
193082094794SBarry Smith     /* next, compute all the lengths */
193182094794SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
193282094794SBarry Smith     olens = dlens + m;
193382094794SBarry Smith     for (i=0; i<m; i++) {
193482094794SBarry Smith       jend = ii[i+1] - ii[i];
193582094794SBarry Smith       olen = 0;
193682094794SBarry Smith       dlen = 0;
193782094794SBarry Smith       for (j=0; j<jend; j++) {
193882094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
193982094794SBarry Smith         else dlen++;
194082094794SBarry Smith         jj++;
194182094794SBarry Smith       }
194282094794SBarry Smith       olens[i] = olen;
194382094794SBarry Smith       dlens[i] = dlen;
194482094794SBarry Smith     }
194582094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
194682094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
194782094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
194882094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
194982094794SBarry Smith     ierr = PetscFree(dlens);CHKERRQ(ierr);
195082094794SBarry Smith   } else {
195182094794SBarry Smith     PetscInt ml,nl;
195282094794SBarry Smith 
195382094794SBarry Smith     M = *newmat;
195482094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
195582094794SBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
195682094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
195782094794SBarry Smith     /*
195882094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
195982094794SBarry Smith        rather than the slower MatSetValues().
196082094794SBarry Smith     */
196182094794SBarry Smith     M->was_assembled = PETSC_TRUE;
196282094794SBarry Smith     M->assembled     = PETSC_FALSE;
196382094794SBarry Smith   }
196482094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
196582094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
196682094794SBarry Smith   aij = (Mat_SeqBAIJ*)(Mreuse)->data;
196782094794SBarry Smith   ii  = aij->i;
196882094794SBarry Smith   jj  = aij->j;
196982094794SBarry Smith   aa  = aij->a;
197082094794SBarry Smith   for (i=0; i<m; i++) {
197182094794SBarry Smith     row   = rstart/bs + i;
197282094794SBarry Smith     nz    = ii[i+1] - ii[i];
197382094794SBarry Smith     cwork = jj;     jj += nz;
197482094794SBarry Smith     vwork = aa;     aa += nz;
197582094794SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
197682094794SBarry Smith   }
197782094794SBarry Smith 
197882094794SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
197982094794SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
198082094794SBarry Smith   *newmat = M;
198182094794SBarry Smith 
198282094794SBarry Smith   /* save submatrix used in processor for next request */
198382094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
198482094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
198582094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
198682094794SBarry Smith   }
198782094794SBarry Smith 
198882094794SBarry Smith   PetscFunctionReturn(0);
198982094794SBarry Smith }
199082094794SBarry Smith 
199182094794SBarry Smith #undef __FUNCT__
199282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
199382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
199482094794SBarry Smith {
199582094794SBarry Smith   MPI_Comm       comm,pcomm;
199682094794SBarry Smith   PetscInt       first,local_size,nrows;
199782094794SBarry Smith   const PetscInt *rows;
1998dbf0e21dSBarry Smith   PetscMPIInt    size;
199982094794SBarry Smith   IS             crowp,growp,irowp,lrowp,lcolp,icolp;
200082094794SBarry Smith   PetscErrorCode ierr;
200182094794SBarry Smith 
200282094794SBarry Smith   PetscFunctionBegin;
200382094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
200482094794SBarry Smith   /* make a collective version of 'rowp' */
200582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
200682094794SBarry Smith   if (pcomm==comm) {
200782094794SBarry Smith     crowp = rowp;
200882094794SBarry Smith   } else {
200982094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
201082094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
201182094794SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr);
201282094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
201382094794SBarry Smith   }
201482094794SBarry Smith   /* collect the global row permutation and invert it */
201582094794SBarry Smith   ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr);
201682094794SBarry Smith   ierr = ISSetPermutation(growp);CHKERRQ(ierr);
201782094794SBarry Smith   if (pcomm!=comm) {
201882094794SBarry Smith     ierr = ISDestroy(crowp);CHKERRQ(ierr);
201982094794SBarry Smith   }
202082094794SBarry Smith   ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr);
202182094794SBarry Smith   /* get the local target indices */
202282094794SBarry Smith   ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr);
202382094794SBarry Smith   ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr);
202482094794SBarry Smith   ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr);
202582094794SBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr);
202682094794SBarry Smith   ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr);
202782094794SBarry Smith   ierr = ISDestroy(irowp);CHKERRQ(ierr);
202882094794SBarry Smith   /* the column permutation is so much easier;
202982094794SBarry Smith      make a local version of 'colp' and invert it */
203082094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2031dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2032dbf0e21dSBarry Smith   if (size==1) {
203382094794SBarry Smith     lcolp = colp;
203482094794SBarry Smith   } else {
203582094794SBarry Smith     ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr);
203682094794SBarry Smith     ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr);
203782094794SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr);
203882094794SBarry Smith   }
2039dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
204082094794SBarry Smith   ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr);
20414aa3045dSJed Brown   ierr = ISSetPermutation(icolp);CHKERRQ(ierr);
2042dbf0e21dSBarry Smith   if (size>1) {
204382094794SBarry Smith     ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr);
204482094794SBarry Smith     ierr = ISDestroy(lcolp);CHKERRQ(ierr);
204582094794SBarry Smith   }
204682094794SBarry Smith   /* now we just get the submatrix */
20474aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
204882094794SBarry Smith   /* clean up */
204982094794SBarry Smith   ierr = ISDestroy(lrowp);CHKERRQ(ierr);
205082094794SBarry Smith   ierr = ISDestroy(icolp);CHKERRQ(ierr);
205182094794SBarry Smith   PetscFunctionReturn(0);
205282094794SBarry Smith }
205382094794SBarry Smith 
20548c7482ecSBarry Smith #undef __FUNCT__
20558c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
20568c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
20578c7482ecSBarry Smith {
20588c7482ecSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*) mat->data;
20598c7482ecSBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
20608c7482ecSBarry Smith 
20618c7482ecSBarry Smith   PetscFunctionBegin;
20628c7482ecSBarry Smith   if (nghosts) { *nghosts = B->nbs;}
20638c7482ecSBarry Smith   if (ghosts) {*ghosts = baij->garray;}
20648c7482ecSBarry Smith   PetscFunctionReturn(0);
20658c7482ecSBarry Smith }
20668c7482ecSBarry Smith 
2067f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat);
2068f6d58c54SBarry Smith 
2069f6d58c54SBarry Smith #undef __FUNCT__
2070f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ"
2071f6d58c54SBarry Smith /*
2072f6d58c54SBarry Smith     This routine is almost identical to MatFDColoringCreate_MPIBAIJ()!
2073f6d58c54SBarry Smith */
2074f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c)
2075f6d58c54SBarry Smith {
2076f6d58c54SBarry Smith   Mat_MPIBAIJ            *baij = (Mat_MPIBAIJ*)mat->data;
2077f6d58c54SBarry Smith   PetscErrorCode        ierr;
2078f6d58c54SBarry Smith   PetscMPIInt           size,*ncolsonproc,*disp,nn;
2079f6d58c54SBarry Smith   PetscInt              bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col;
2080f6d58c54SBarry Smith   const PetscInt        *is;
2081f6d58c54SBarry Smith   PetscInt              nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj;
2082f6d58c54SBarry Smith   PetscInt              *rowhit,M,cstart,cend,colb;
2083f6d58c54SBarry Smith   PetscInt              *columnsforrow,l;
2084f6d58c54SBarry Smith   IS                    *isa;
2085f6d58c54SBarry Smith   PetscTruth             done,flg;
2086f6d58c54SBarry Smith   ISLocalToGlobalMapping map = mat->bmapping;
2087f6d58c54SBarry Smith   PetscInt               *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype;
2088f6d58c54SBarry Smith 
2089f6d58c54SBarry Smith   PetscFunctionBegin;
2090f6d58c54SBarry Smith   if (!mat->assembled) {
2091f6d58c54SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();");
2092f6d58c54SBarry Smith   }
2093f6d58c54SBarry Smith   if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock");
2094f6d58c54SBarry Smith 
2095f6d58c54SBarry Smith   ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr);
2096f6d58c54SBarry Smith 
2097f6d58c54SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
2098f6d58c54SBarry Smith   M                = mat->rmap->n/bs;
2099f6d58c54SBarry Smith   cstart           = mat->cmap->rstart/bs;
2100f6d58c54SBarry Smith   cend             = mat->cmap->rend/bs;
2101f6d58c54SBarry Smith   c->M             = mat->rmap->N/bs;  /* set the global rows and columns and local rows */
2102f6d58c54SBarry Smith   c->N             = mat->cmap->N/bs;
2103f6d58c54SBarry Smith   c->m             = mat->rmap->n/bs;
2104f6d58c54SBarry Smith   c->rstart        = mat->rmap->rstart/bs;
2105f6d58c54SBarry Smith 
2106f6d58c54SBarry Smith   c->ncolors       = nis;
2107f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr);
2108f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr);
2109f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr);
2110f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr);
2111f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr);
2112f6d58c54SBarry Smith   ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr);
2113f6d58c54SBarry Smith 
2114f6d58c54SBarry Smith   /* Allow access to data structures of local part of matrix */
2115f6d58c54SBarry Smith   if (!baij->colmap) {
2116f6d58c54SBarry Smith     ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
2117f6d58c54SBarry Smith   }
2118f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2119f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2120f6d58c54SBarry Smith 
2121f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr);
2122f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr);
2123f6d58c54SBarry Smith 
2124f6d58c54SBarry Smith   for (i=0; i<nis; i++) {
2125f6d58c54SBarry Smith     ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr);
2126f6d58c54SBarry Smith     ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr);
2127f6d58c54SBarry Smith     c->ncolumns[i] = n;
2128f6d58c54SBarry Smith     if (n) {
2129f6d58c54SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr);
2130f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr);
2131f6d58c54SBarry Smith       ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr);
2132f6d58c54SBarry Smith     } else {
2133f6d58c54SBarry Smith       c->columns[i]  = 0;
2134f6d58c54SBarry Smith     }
2135f6d58c54SBarry Smith 
2136f6d58c54SBarry Smith     if (ctype == IS_COLORING_GLOBAL){
2137f6d58c54SBarry Smith       /* Determine the total (parallel) number of columns of this color */
2138f6d58c54SBarry Smith       ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
2139*fca92195SBarry Smith       ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr);
2140f6d58c54SBarry Smith 
2141f6d58c54SBarry Smith       nn   = PetscMPIIntCast(n);
2142f6d58c54SBarry Smith       ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2143f6d58c54SBarry Smith       nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];}
2144f6d58c54SBarry Smith       if (!nctot) {
2145f6d58c54SBarry Smith         ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr);
2146f6d58c54SBarry Smith       }
2147f6d58c54SBarry Smith 
2148f6d58c54SBarry Smith       disp[0] = 0;
2149f6d58c54SBarry Smith       for (j=1; j<size; j++) {
2150f6d58c54SBarry Smith         disp[j] = disp[j-1] + ncolsonproc[j-1];
2151f6d58c54SBarry Smith       }
2152f6d58c54SBarry Smith 
2153f6d58c54SBarry Smith       /* Get complete list of columns for color on each processor */
2154f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2155f6d58c54SBarry Smith       ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2156*fca92195SBarry Smith       ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr);
2157f6d58c54SBarry Smith     } else if (ctype == IS_COLORING_GHOSTED){
2158f6d58c54SBarry Smith       /* Determine local number of columns of this color on this process, including ghost points */
2159f6d58c54SBarry Smith       nctot = n;
2160f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2161f6d58c54SBarry Smith       ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr);
2162f6d58c54SBarry Smith     } else {
2163f6d58c54SBarry Smith       SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type");
2164f6d58c54SBarry Smith     }
2165f6d58c54SBarry Smith 
2166f6d58c54SBarry Smith     /*
2167f6d58c54SBarry Smith        Mark all rows affect by these columns
2168f6d58c54SBarry Smith     */
2169f6d58c54SBarry Smith     /* Temporary option to allow for debugging/testing */
2170f6d58c54SBarry Smith     flg  = PETSC_FALSE;
2171f6d58c54SBarry Smith     ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr);
2172f6d58c54SBarry Smith     if (!flg) {/*-----------------------------------------------------------------------------*/
2173f6d58c54SBarry Smith       /* crude, fast version */
2174f6d58c54SBarry Smith       ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr);
2175f6d58c54SBarry Smith       /* loop over columns*/
2176f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2177f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2178f6d58c54SBarry Smith           col = ltog[cols[j]];
2179f6d58c54SBarry Smith         } else {
2180f6d58c54SBarry Smith           col  = cols[j];
2181f6d58c54SBarry Smith         }
2182f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2183f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2184f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2185f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2186f6d58c54SBarry Smith         } else {
2187f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2188f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr)
2189f6d58c54SBarry Smith 	  colb --;
2190f6d58c54SBarry Smith #else
2191f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2192f6d58c54SBarry Smith #endif
2193f6d58c54SBarry Smith           if (colb == -1) {
2194f6d58c54SBarry Smith             m = 0;
2195f6d58c54SBarry Smith           } else {
2196f6d58c54SBarry Smith             colb = colb/bs;
2197f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2198f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2199f6d58c54SBarry Smith           }
2200f6d58c54SBarry Smith         }
2201f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2202f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2203f6d58c54SBarry Smith           rowhit[*rows++] = col + 1;
2204f6d58c54SBarry Smith         }
2205f6d58c54SBarry Smith       }
2206f6d58c54SBarry Smith 
2207f6d58c54SBarry Smith       /* count the number of hits */
2208f6d58c54SBarry Smith       nrows = 0;
2209f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2210f6d58c54SBarry Smith         if (rowhit[j]) nrows++;
2211f6d58c54SBarry Smith       }
2212f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2213f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2214f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2215f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2216f6d58c54SBarry Smith       nrows = 0;
2217f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2218f6d58c54SBarry Smith         if (rowhit[j]) {
2219f6d58c54SBarry Smith           c->rows[i][nrows]           = j;
2220f6d58c54SBarry Smith           c->columnsforrow[i][nrows] = rowhit[j] - 1;
2221f6d58c54SBarry Smith           nrows++;
2222f6d58c54SBarry Smith         }
2223f6d58c54SBarry Smith       }
2224f6d58c54SBarry Smith     } else {/*-------------------------------------------------------------------------------*/
2225f6d58c54SBarry Smith       /* slow version, using rowhit as a linked list */
2226f6d58c54SBarry Smith       PetscInt currentcol,fm,mfm;
2227f6d58c54SBarry Smith       rowhit[M] = M;
2228f6d58c54SBarry Smith       nrows     = 0;
2229f6d58c54SBarry Smith       /* loop over columns*/
2230f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2231f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2232f6d58c54SBarry Smith           col = ltog[cols[j]];
2233f6d58c54SBarry Smith         } else {
2234f6d58c54SBarry Smith           col  = cols[j];
2235f6d58c54SBarry Smith         }
2236f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2237f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2238f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2239f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2240f6d58c54SBarry Smith         } else {
2241f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2242f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2243f6d58c54SBarry Smith           colb --;
2244f6d58c54SBarry Smith #else
2245f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2246f6d58c54SBarry Smith #endif
2247f6d58c54SBarry Smith           if (colb == -1) {
2248f6d58c54SBarry Smith             m = 0;
2249f6d58c54SBarry Smith           } else {
2250f6d58c54SBarry Smith             colb = colb/bs;
2251f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2252f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2253f6d58c54SBarry Smith           }
2254f6d58c54SBarry Smith         }
2255f6d58c54SBarry Smith 
2256f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2257f6d58c54SBarry Smith         fm    = M; /* fm points to first entry in linked list */
2258f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2259f6d58c54SBarry Smith           currentcol = *rows++;
2260f6d58c54SBarry Smith 	  /* is it already in the list? */
2261f6d58c54SBarry Smith           do {
2262f6d58c54SBarry Smith             mfm  = fm;
2263f6d58c54SBarry Smith             fm   = rowhit[fm];
2264f6d58c54SBarry Smith           } while (fm < currentcol);
2265f6d58c54SBarry Smith           /* not in list so add it */
2266f6d58c54SBarry Smith           if (fm != currentcol) {
2267f6d58c54SBarry Smith             nrows++;
2268f6d58c54SBarry Smith             columnsforrow[currentcol] = col;
2269f6d58c54SBarry Smith             /* next three lines insert new entry into linked list */
2270f6d58c54SBarry Smith             rowhit[mfm]               = currentcol;
2271f6d58c54SBarry Smith             rowhit[currentcol]        = fm;
2272f6d58c54SBarry Smith             fm                        = currentcol;
2273f6d58c54SBarry Smith             /* fm points to present position in list since we know the columns are sorted */
2274f6d58c54SBarry Smith           } else {
2275f6d58c54SBarry Smith             SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected");
2276f6d58c54SBarry Smith           }
2277f6d58c54SBarry Smith         }
2278f6d58c54SBarry Smith       }
2279f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2280f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2281f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2282f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2283f6d58c54SBarry Smith       /* now store the linked list of rows into c->rows[i] */
2284f6d58c54SBarry Smith       nrows = 0;
2285f6d58c54SBarry Smith       fm    = rowhit[M];
2286f6d58c54SBarry Smith       do {
2287f6d58c54SBarry Smith         c->rows[i][nrows]            = fm;
2288f6d58c54SBarry Smith         c->columnsforrow[i][nrows++] = columnsforrow[fm];
2289f6d58c54SBarry Smith         fm                           = rowhit[fm];
2290f6d58c54SBarry Smith       } while (fm < M);
2291f6d58c54SBarry Smith     } /* ---------------------------------------------------------------------------------------*/
2292f6d58c54SBarry Smith     ierr = PetscFree(cols);CHKERRQ(ierr);
2293f6d58c54SBarry Smith   }
2294f6d58c54SBarry Smith 
2295f6d58c54SBarry Smith   /* Optimize by adding the vscale, and scaleforrow[][] fields */
2296f6d58c54SBarry Smith   /*
2297f6d58c54SBarry Smith        vscale will contain the "diagonal" on processor scalings followed by the off processor
2298f6d58c54SBarry Smith   */
2299f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) {
2300f6d58c54SBarry Smith     PetscInt *garray;
2301f6d58c54SBarry Smith     ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr);
2302f6d58c54SBarry Smith     for (i=0; i<baij->B->cmap->n/bs; i++) {
2303f6d58c54SBarry Smith       for (j=0; j<bs; j++) {
2304f6d58c54SBarry Smith         garray[i*bs+j] = bs*baij->garray[i]+j;
2305f6d58c54SBarry Smith       }
2306f6d58c54SBarry Smith     }
2307f6d58c54SBarry Smith     ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr);
2308f6d58c54SBarry Smith     ierr = PetscFree(garray);CHKERRQ(ierr);
2309f6d58c54SBarry Smith     CHKMEMQ;
2310f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2311f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2312f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2313f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2314f6d58c54SBarry Smith         col = c->columnsforrow[k][l];
2315f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2316f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2317f6d58c54SBarry Smith           colb = col - cstart;
2318f6d58c54SBarry Smith         } else {
2319f6d58c54SBarry Smith           /* column  is in "off-processor" part */
2320f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2321f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2322f6d58c54SBarry Smith           colb --;
2323f6d58c54SBarry Smith #else
2324f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2325f6d58c54SBarry Smith #endif
2326f6d58c54SBarry Smith           colb = colb/bs;
2327f6d58c54SBarry Smith           colb += cend - cstart;
2328f6d58c54SBarry Smith         }
2329f6d58c54SBarry Smith         c->vscaleforrow[k][l] = colb;
2330f6d58c54SBarry Smith       }
2331f6d58c54SBarry Smith     }
2332f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GHOSTED) {
2333f6d58c54SBarry Smith     /* Get gtol mapping */
2334f6d58c54SBarry Smith     PetscInt N = mat->cmap->N, *gtol;
2335f6d58c54SBarry Smith     ierr = PetscMalloc((N+1)*sizeof(PetscInt),&gtol);CHKERRQ(ierr);
2336f6d58c54SBarry Smith     for (i=0; i<N; i++) gtol[i] = -1;
2337f6d58c54SBarry Smith     for (i=0; i<map->n; i++) gtol[ltog[i]] = i;
2338f6d58c54SBarry Smith 
2339f6d58c54SBarry Smith     c->vscale = 0; /* will be created in MatFDColoringApply() */
2340f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2341f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2342f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2343f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2344f6d58c54SBarry Smith         col = c->columnsforrow[k][l];      /* global column index */
2345f6d58c54SBarry Smith         c->vscaleforrow[k][l] = gtol[col]; /* local column index */
2346f6d58c54SBarry Smith       }
2347f6d58c54SBarry Smith     }
2348f6d58c54SBarry Smith     ierr = PetscFree(gtol);CHKERRQ(ierr);
2349f6d58c54SBarry Smith   }
2350f6d58c54SBarry Smith   ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr);
2351f6d58c54SBarry Smith 
2352f6d58c54SBarry Smith   ierr = PetscFree(rowhit);CHKERRQ(ierr);
2353f6d58c54SBarry Smith   ierr = PetscFree(columnsforrow);CHKERRQ(ierr);
2354f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2355f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2356f6d58c54SBarry Smith     CHKMEMQ;
2357f6d58c54SBarry Smith   PetscFunctionReturn(0);
2358f6d58c54SBarry Smith }
2359f6d58c54SBarry Smith 
2360f6d58c54SBarry Smith #undef __FUNCT__
2361f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ"
2362f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat)
2363f6d58c54SBarry Smith {
2364f6d58c54SBarry Smith   Mat            B;
2365f6d58c54SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
2366f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2367f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2368f6d58c54SBarry Smith   PetscErrorCode ierr;
2369f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2370f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2371f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2372f6d58c54SBarry Smith 
2373f6d58c54SBarry Smith   PetscFunctionBegin;
2374f6d58c54SBarry Smith   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2375f6d58c54SBarry Smith   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2376f6d58c54SBarry Smith 
2377f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2378f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2379f6d58c54SBarry Smith   */
2380f6d58c54SBarry Smith   ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
2381f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2382f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2383f6d58c54SBarry Smith   }
2384f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2385f6d58c54SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr);
2386f6d58c54SBarry Smith   displs     = recvcounts + size;
2387f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2388f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2389f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2390f6d58c54SBarry Smith   }
2391f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2392f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2393f6d58c54SBarry Smith #else
2394f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2395f6d58c54SBarry Smith #endif
2396f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2397f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2398f6d58c54SBarry Smith   */
2399f6d58c54SBarry Smith   ierr  = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2400f6d58c54SBarry Smith   ierr  = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2401f6d58c54SBarry Smith   ierr  = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2402f6d58c54SBarry Smith   ierr  = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2403f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2404f6d58c54SBarry Smith 
2405f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2406f6d58c54SBarry Smith     Copy my part of matrix column indices over
2407f6d58c54SBarry Smith   */
2408f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2409f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2410f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2411f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2412f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2413f6d58c54SBarry Smith   cnt        = 0;
2414f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2415f6d58c54SBarry Smith 
2416f6d58c54SBarry Smith     /* put in lower diagonal portion */
2417f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2418f6d58c54SBarry Smith     while (m > 0) {
2419f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2420f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2421f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2422f6d58c54SBarry Smith       m--;
2423f6d58c54SBarry Smith     }
2424f6d58c54SBarry Smith 
2425f6d58c54SBarry Smith     /* put in diagonal portion */
2426f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2427f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2428f6d58c54SBarry Smith     }
2429f6d58c54SBarry Smith 
2430f6d58c54SBarry Smith     /* put in upper diagonal portion */
2431f6d58c54SBarry Smith     while (m-- > 0) {
2432f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2433f6d58c54SBarry Smith     }
2434f6d58c54SBarry Smith   }
2435f6d58c54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2436f6d58c54SBarry Smith 
2437f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2438f6d58c54SBarry Smith     Gather all column indices to all processors
2439f6d58c54SBarry Smith   */
2440f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2441f6d58c54SBarry Smith     recvcounts[i] = 0;
2442f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2443f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2444f6d58c54SBarry Smith     }
2445f6d58c54SBarry Smith   }
2446f6d58c54SBarry Smith   displs[0]  = 0;
2447f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2448f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2449f6d58c54SBarry Smith   }
2450f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2451f6d58c54SBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2452f6d58c54SBarry Smith #else
2453f6d58c54SBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2454f6d58c54SBarry Smith #endif
2455f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2456f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2457f6d58c54SBarry Smith   */
2458f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2459f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2460f6d58c54SBarry Smith   /* set the b->i indices */
2461f6d58c54SBarry Smith   b->i[0] = 0;
2462f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2463f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2464f6d58c54SBarry Smith   }
2465f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2466f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2467f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2468f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2469f6d58c54SBarry Smith 
2470f6d58c54SBarry Smith   if (A->symmetric){
2471f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2472f6d58c54SBarry Smith   } else if (A->hermitian) {
2473f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2474f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2475f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2476f6d58c54SBarry Smith   }
2477f6d58c54SBarry Smith   *newmat = B;
2478f6d58c54SBarry Smith   PetscFunctionReturn(0);
2479f6d58c54SBarry Smith }
2480f6d58c54SBarry Smith 
2481b1a666ecSBarry Smith #undef __FUNCT__
2482b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2483b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2484b1a666ecSBarry Smith {
2485b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2486b1a666ecSBarry Smith   PetscErrorCode ierr;
2487b1a666ecSBarry Smith   Vec            bb1 = 0;
2488b1a666ecSBarry Smith 
2489b1a666ecSBarry Smith   PetscFunctionBegin;
2490b1a666ecSBarry Smith   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
2491b1a666ecSBarry Smith     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2492b1a666ecSBarry Smith   }
2493b1a666ecSBarry Smith 
2494b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2495b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2496b1a666ecSBarry Smith     PetscFunctionReturn(0);
2497b1a666ecSBarry Smith   }
2498b1a666ecSBarry Smith 
2499b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2500b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2501b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2502b1a666ecSBarry Smith       its--;
2503b1a666ecSBarry Smith     }
2504b1a666ecSBarry Smith 
2505b1a666ecSBarry Smith     while (its--) {
2506b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2507b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2508b1a666ecSBarry Smith 
2509b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2510b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2511b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2512b1a666ecSBarry Smith 
2513b1a666ecSBarry Smith       /* local sweep */
2514b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2515b1a666ecSBarry Smith     }
2516b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
2517b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2518b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2519b1a666ecSBarry Smith       its--;
2520b1a666ecSBarry Smith     }
2521b1a666ecSBarry Smith     while (its--) {
2522b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2523b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2524b1a666ecSBarry Smith 
2525b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2526b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2527b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2528b1a666ecSBarry Smith 
2529b1a666ecSBarry Smith       /* local sweep */
2530b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2531b1a666ecSBarry Smith     }
2532b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
2533b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2534b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2535b1a666ecSBarry Smith       its--;
2536b1a666ecSBarry Smith     }
2537b1a666ecSBarry Smith     while (its--) {
2538b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2539b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2540b1a666ecSBarry Smith 
2541b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2542b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2543b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2544b1a666ecSBarry Smith 
2545b1a666ecSBarry Smith       /* local sweep */
2546b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2547b1a666ecSBarry Smith     }
2548b1a666ecSBarry Smith   } else {
2549b1a666ecSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2550b1a666ecSBarry Smith   }
2551b1a666ecSBarry Smith 
2552b1a666ecSBarry Smith   if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);}
2553b1a666ecSBarry Smith   PetscFunctionReturn(0);
2554b1a666ecSBarry Smith }
2555b1a666ecSBarry Smith 
2556f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*);
2557f6d58c54SBarry Smith 
25588c7482ecSBarry Smith 
255979bdfe76SSatish Balay /* -------------------------------------------------------------------*/
2560cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
2561cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
2562cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
2563cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
2564cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
256597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
25667c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
25677c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
2568cc2dc46cSBarry Smith        0,
2569cc2dc46cSBarry Smith        0,
2570cc2dc46cSBarry Smith        0,
257197304618SKris Buschelman /*10*/ 0,
2572cc2dc46cSBarry Smith        0,
2573cc2dc46cSBarry Smith        0,
2574b1a666ecSBarry Smith        MatSOR_MPIBAIJ,
2575cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
257697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
25777fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
2578cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
2579cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
2580cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
258197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
2582cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2583cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2584cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
2585d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ,
2586cc2dc46cSBarry Smith        0,
2587cc2dc46cSBarry Smith        0,
2588cc2dc46cSBarry Smith        0,
2589cc2dc46cSBarry Smith        0,
2590d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ,
2591273d9f13SBarry Smith        0,
2592cc2dc46cSBarry Smith        0,
2593cc2dc46cSBarry Smith        0,
2594cc2dc46cSBarry Smith        0,
2595d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ,
2596cc2dc46cSBarry Smith        0,
2597cc2dc46cSBarry Smith        0,
2598cc2dc46cSBarry Smith        0,
2599cc2dc46cSBarry Smith        0,
2600d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ,
2601cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2602cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2603cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
26043c896bc6SHong Zhang        MatCopy_MPIBAIJ,
2605d519adbfSMatthew Knepley /*44*/ 0,
2606cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2607cc2dc46cSBarry Smith        0,
2608cc2dc46cSBarry Smith        0,
2609cc2dc46cSBarry Smith        0,
261041c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ,
2611cc2dc46cSBarry Smith        0,
2612cc2dc46cSBarry Smith        0,
2613cc2dc46cSBarry Smith        0,
2614cc2dc46cSBarry Smith        0,
2615f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ,
2616cc2dc46cSBarry Smith        0,
2617cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
261882094794SBarry Smith        MatPermute_MPIBAIJ,
2619cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
2620d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ,
2621f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2622f14a1c24SBarry Smith        MatView_MPIBAIJ,
2623357abbc8SBarry Smith        0,
26247843d17aSBarry Smith        0,
2625d519adbfSMatthew Knepley /*64*/ 0,
26267843d17aSBarry Smith        0,
26277843d17aSBarry Smith        0,
26287843d17aSBarry Smith        0,
26297843d17aSBarry Smith        0,
2630d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ,
26317843d17aSBarry Smith        0,
263297304618SKris Buschelman        0,
263397304618SKris Buschelman        0,
263497304618SKris Buschelman        0,
2635d519adbfSMatthew Knepley /*74*/ 0,
2636f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
263797304618SKris Buschelman        0,
263897304618SKris Buschelman        0,
263997304618SKris Buschelman        0,
2640d519adbfSMatthew Knepley /*79*/ 0,
264197304618SKris Buschelman        0,
264297304618SKris Buschelman        0,
264397304618SKris Buschelman        0,
2644865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2645d519adbfSMatthew Knepley /*84*/ 0,
2646865e5f61SKris Buschelman        0,
2647865e5f61SKris Buschelman        0,
2648865e5f61SKris Buschelman        0,
2649865e5f61SKris Buschelman        0,
2650d519adbfSMatthew Knepley /*89*/ 0,
2651865e5f61SKris Buschelman        0,
2652865e5f61SKris Buschelman        0,
2653865e5f61SKris Buschelman        0,
2654865e5f61SKris Buschelman        0,
2655d519adbfSMatthew Knepley /*94*/ 0,
2656865e5f61SKris Buschelman        0,
2657865e5f61SKris Buschelman        0,
265899cafbc1SBarry Smith        0,
265999cafbc1SBarry Smith        0,
2660d519adbfSMatthew Knepley /*99*/ 0,
266199cafbc1SBarry Smith        0,
266299cafbc1SBarry Smith        0,
266399cafbc1SBarry Smith        0,
266499cafbc1SBarry Smith        0,
2665d519adbfSMatthew Knepley /*104*/0,
266699cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
26678c7482ecSBarry Smith        MatImaginaryPart_MPIBAIJ,
26688c7482ecSBarry Smith        0,
26698c7482ecSBarry Smith        0,
2670d519adbfSMatthew Knepley /*109*/0,
26718c7482ecSBarry Smith        0,
26728c7482ecSBarry Smith        0,
26738c7482ecSBarry Smith        0,
26748c7482ecSBarry Smith        0,
2675f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ,
26768c7482ecSBarry Smith        0,
26778c7482ecSBarry Smith        MatGetGhosts_MPIBAIJ
26788c7482ecSBarry Smith };
267979bdfe76SSatish Balay 
2680e18c124aSSatish Balay EXTERN_C_BEGIN
26814a2ae208SSatish Balay #undef __FUNCT__
26824a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2683be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
26845ef9f2a5SBarry Smith {
26855ef9f2a5SBarry Smith   PetscFunctionBegin;
26865ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
26875ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
26885ef9f2a5SBarry Smith   PetscFunctionReturn(0);
26895ef9f2a5SBarry Smith }
2690e18c124aSSatish Balay EXTERN_C_END
269179bdfe76SSatish Balay 
2692273d9f13SBarry Smith EXTERN_C_BEGIN
2693f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2694d94109b8SHong Zhang EXTERN_C_END
2695d94109b8SHong Zhang 
2696b8d659d7SLisandro Dalcin EXTERN_C_BEGIN
2697aac34f13SBarry Smith #undef __FUNCT__
2698aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2699cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2700aac34f13SBarry Smith {
2701b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2702b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2703b8d659d7SLisandro Dalcin   const PetscInt *JJ=0;
2704b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2705aac34f13SBarry Smith   PetscErrorCode ierr;
2706aac34f13SBarry Smith 
2707aac34f13SBarry Smith   PetscFunctionBegin;
2708b8d659d7SLisandro Dalcin 
2709b8d659d7SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
271026283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
271126283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
271226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
271326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2714d0f46423SBarry Smith   m      = B->rmap->n/bs;
2715d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2716d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2717d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2718b8d659d7SLisandro Dalcin 
2719cf12db73SBarry Smith   if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2720*fca92195SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
2721aac34f13SBarry Smith   for (i=0; i<m; i++) {
2722cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2723b8d659d7SLisandro Dalcin     if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2724b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2725cf12db73SBarry Smith     JJ  = jj + ii[i];
2726b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2727aac34f13SBarry Smith       if (*JJ >= cstart) break;
2728aac34f13SBarry Smith       JJ++;
2729aac34f13SBarry Smith     }
2730aac34f13SBarry Smith     d = 0;
2731b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2732aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2733aac34f13SBarry Smith       d++;
2734aac34f13SBarry Smith     }
2735aac34f13SBarry Smith     d_nnz[i] = d;
2736b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2737aac34f13SBarry Smith   }
2738aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2739*fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2740aac34f13SBarry Smith 
2741b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2742b8d659d7SLisandro Dalcin   if (!values) {
2743*fca92195SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2744b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2745b8d659d7SLisandro Dalcin   }
2746b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2747b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2748cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2749cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2750cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2751b8d659d7SLisandro Dalcin     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2752aac34f13SBarry Smith   }
2753aac34f13SBarry Smith 
2754b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2755aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2756aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2757aac34f13SBarry Smith 
2758aac34f13SBarry Smith   PetscFunctionReturn(0);
2759aac34f13SBarry Smith }
2760b8d659d7SLisandro Dalcin EXTERN_C_END
2761aac34f13SBarry Smith 
2762aac34f13SBarry Smith #undef __FUNCT__
2763aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2764aac34f13SBarry Smith /*@C
2765aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2766aac34f13SBarry Smith    (the default parallel PETSc format).
2767aac34f13SBarry Smith 
2768aac34f13SBarry Smith    Collective on MPI_Comm
2769aac34f13SBarry Smith 
2770aac34f13SBarry Smith    Input Parameters:
2771aac34f13SBarry Smith +  A - the matrix
2772aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2773aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2774aac34f13SBarry Smith -  v - optional values in the matrix
2775aac34f13SBarry Smith 
2776aac34f13SBarry Smith    Level: developer
2777aac34f13SBarry Smith 
2778aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2779aac34f13SBarry Smith 
2780aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2781aac34f13SBarry Smith @*/
2782be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2783aac34f13SBarry Smith {
2784aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2785aac34f13SBarry Smith 
2786aac34f13SBarry Smith   PetscFunctionBegin;
2787aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2788aac34f13SBarry Smith   if (f) {
2789aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2790aac34f13SBarry Smith   }
2791aac34f13SBarry Smith   PetscFunctionReturn(0);
2792aac34f13SBarry Smith }
2793aac34f13SBarry Smith 
2794d94109b8SHong Zhang EXTERN_C_BEGIN
27954a2ae208SSatish Balay #undef __FUNCT__
2796a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2797be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2798a23d5eceSKris Buschelman {
2799a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2800dfbe8321SBarry Smith   PetscErrorCode ierr;
2801db4efbfdSBarry Smith   PetscInt       i, newbs = PetscAbs(bs);
2802a23d5eceSKris Buschelman 
2803a23d5eceSKris Buschelman   PetscFunctionBegin;
2804db4efbfdSBarry Smith   if (bs < 0) {
28057adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2806db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
28078c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2808db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2809db4efbfdSBarry Smith   }
2810db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
2811db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
2812db4efbfdSBarry Smith   }
2813db4efbfdSBarry Smith   bs = newbs;
2814db4efbfdSBarry Smith 
2815a23d5eceSKris Buschelman 
2816a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2817a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2818a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
281977431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
282077431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2821899cda47SBarry Smith 
282226283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
282326283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
282426283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
282526283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2826899cda47SBarry Smith 
2827a23d5eceSKris Buschelman   if (d_nnz) {
2828d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
282977431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2830a23d5eceSKris Buschelman     }
2831a23d5eceSKris Buschelman   }
2832a23d5eceSKris Buschelman   if (o_nnz) {
2833d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
283477431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2835a23d5eceSKris Buschelman     }
2836a23d5eceSKris Buschelman   }
2837a23d5eceSKris Buschelman 
2838a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2839a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2840d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2841d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2842d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2843d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2844a23d5eceSKris Buschelman 
2845a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2846d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2847a23d5eceSKris Buschelman   }
2848d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2849d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2850d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2851d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2852a23d5eceSKris Buschelman 
2853526dfc15SBarry Smith   if (!B->preallocated) {
2854f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2855d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
28569c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
285752e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2858f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2859d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
28609c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
286152e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
28627adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2863526dfc15SBarry Smith   }
2864a23d5eceSKris Buschelman 
2865526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2866526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2867526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2868a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2869a23d5eceSKris Buschelman }
2870a23d5eceSKris Buschelman EXTERN_C_END
2871a23d5eceSKris Buschelman 
2872a23d5eceSKris Buschelman EXTERN_C_BEGIN
2873be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2874be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
287592b32695SKris Buschelman EXTERN_C_END
28765bf65638SKris Buschelman 
287782094794SBarry Smith 
287882094794SBarry Smith EXTERN_C_BEGIN
287982094794SBarry Smith #undef __FUNCT__
288082094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
288182094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj)
288282094794SBarry Smith {
288382094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
288482094794SBarry Smith   PetscErrorCode ierr;
288582094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
288682094794SBarry Smith   PetscInt       M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
288782094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
288882094794SBarry Smith 
288982094794SBarry Smith   PetscFunctionBegin;
289082094794SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr);
289182094794SBarry Smith   ii[0] = 0;
289282094794SBarry Smith   CHKMEMQ;
289382094794SBarry Smith   for (i=0; i<M; i++) {
289482094794SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
289582094794SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
289682094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
289782094794SBarry Smith     /* remove one from count of matrix has diagonal */
289882094794SBarry Smith     for (j=id[i]; j<id[i+1]; j++) {
289982094794SBarry Smith       if (jd[j] == i) {ii[i+1]--;break;}
290082094794SBarry Smith     }
290182094794SBarry Smith   CHKMEMQ;
290282094794SBarry Smith   }
290382094794SBarry Smith   ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr);
290482094794SBarry Smith   cnt = 0;
290582094794SBarry Smith   for (i=0; i<M; i++) {
290682094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
290782094794SBarry Smith       if (garray[jo[j]] > rstart) break;
290882094794SBarry Smith       jj[cnt++] = garray[jo[j]];
290982094794SBarry Smith   CHKMEMQ;
291082094794SBarry Smith     }
291182094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
291282094794SBarry Smith       if (jd[k] != i) {
291382094794SBarry Smith         jj[cnt++] = rstart + jd[k];
291482094794SBarry Smith   CHKMEMQ;
291582094794SBarry Smith       }
291682094794SBarry Smith     }
291782094794SBarry Smith     for (;j<io[i+1]; j++) {
291882094794SBarry Smith       jj[cnt++] = garray[jo[j]];
291982094794SBarry Smith   CHKMEMQ;
292082094794SBarry Smith     }
292182094794SBarry Smith   }
292282094794SBarry Smith   ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr);
292382094794SBarry Smith   PetscFunctionReturn(0);
292482094794SBarry Smith }
2925dbf0e21dSBarry Smith EXTERN_C_END
292682094794SBarry Smith 
29270bad9183SKris Buschelman /*MC
2928fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
29290bad9183SKris Buschelman 
29300bad9183SKris Buschelman    Options Database Keys:
29318c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
29328c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
29338c07d4e3SBarry Smith - -mat_use_hash_table <fact>
29340bad9183SKris Buschelman 
29350bad9183SKris Buschelman   Level: beginner
29360bad9183SKris Buschelman 
29370bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
29380bad9183SKris Buschelman M*/
29390bad9183SKris Buschelman 
294092b32695SKris Buschelman EXTERN_C_BEGIN
2941a23d5eceSKris Buschelman #undef __FUNCT__
29424a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2943be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2944273d9f13SBarry Smith {
2945273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2946dfbe8321SBarry Smith   PetscErrorCode ierr;
2947273d9f13SBarry Smith   PetscTruth     flg;
2948273d9f13SBarry Smith 
2949273d9f13SBarry Smith   PetscFunctionBegin;
295038f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
295182502324SSatish Balay   B->data = (void*)b;
295282502324SSatish Balay 
2953085a36d4SBarry Smith 
2954273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2955273d9f13SBarry Smith   B->mapping    = 0;
2956273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2957273d9f13SBarry Smith 
2958273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
29597adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
29607adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2961273d9f13SBarry Smith 
2962273d9f13SBarry Smith   /* build local table of row and column ownerships */
2963899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2964273d9f13SBarry Smith 
2965273d9f13SBarry Smith   /* build cache for off array entries formed */
29667adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2967273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2968273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2969273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2970273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2971273d9f13SBarry Smith 
2972273d9f13SBarry Smith   /* stuff used in block assembly */
2973273d9f13SBarry Smith   b->barray       = 0;
2974273d9f13SBarry Smith 
2975273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2976273d9f13SBarry Smith   b->lvec         = 0;
2977273d9f13SBarry Smith   b->Mvctx        = 0;
2978273d9f13SBarry Smith 
2979273d9f13SBarry Smith   /* stuff for MatGetRow() */
2980273d9f13SBarry Smith   b->rowindices   = 0;
2981273d9f13SBarry Smith   b->rowvalues    = 0;
2982273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2983273d9f13SBarry Smith 
2984273d9f13SBarry Smith   /* hash table stuff */
2985273d9f13SBarry Smith   b->ht           = 0;
2986273d9f13SBarry Smith   b->hd           = 0;
2987273d9f13SBarry Smith   b->ht_size      = 0;
2988273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2989273d9f13SBarry Smith   b->ht_fact      = 0;
2990273d9f13SBarry Smith   b->ht_total_ct  = 0;
2991273d9f13SBarry Smith   b->ht_insert_ct = 0;
2992273d9f13SBarry Smith 
29937adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
29948c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2995273d9f13SBarry Smith     if (flg) {
2996f6275e2eSBarry Smith       PetscReal fact = 1.39;
29974e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
29988c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2999273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
3000273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
30011e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
3002273d9f13SBarry Smith     }
30038c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
30048c07d4e3SBarry Smith 
300582094794SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",
300682094794SBarry Smith                                      "MatConvert_MPIBAIJ_MPIAdj",
300782094794SBarry Smith                                       MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
3008273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
3009273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
3010273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3011273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
3012273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
3013273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3014273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
3015273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
3016273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3017a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
3018a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
3019a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3020aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
302144ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
3022aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
302392b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
302492b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
302592b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
30265bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
30275bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
30285bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
302917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
3030273d9f13SBarry Smith   PetscFunctionReturn(0);
3031273d9f13SBarry Smith }
3032273d9f13SBarry Smith EXTERN_C_END
3033273d9f13SBarry Smith 
3034209238afSKris Buschelman /*MC
3035002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3036209238afSKris Buschelman 
3037209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3038209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3039209238afSKris Buschelman 
3040209238afSKris Buschelman    Options Database Keys:
3041209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3042209238afSKris Buschelman 
3043209238afSKris Buschelman   Level: beginner
3044209238afSKris Buschelman 
3045aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3046209238afSKris Buschelman M*/
3047209238afSKris Buschelman 
3048209238afSKris Buschelman EXTERN_C_BEGIN
3049209238afSKris Buschelman #undef __FUNCT__
3050209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
3051be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
3052dfbe8321SBarry Smith {
30536849ba73SBarry Smith   PetscErrorCode ierr;
3054b24ad042SBarry Smith   PetscMPIInt    size;
3055209238afSKris Buschelman 
3056209238afSKris Buschelman   PetscFunctionBegin;
30577adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
3058209238afSKris Buschelman   if (size == 1) {
3059209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
3060209238afSKris Buschelman   } else {
3061209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
3062209238afSKris Buschelman   }
3063209238afSKris Buschelman   PetscFunctionReturn(0);
3064209238afSKris Buschelman }
3065209238afSKris Buschelman EXTERN_C_END
3066209238afSKris Buschelman 
30674a2ae208SSatish Balay #undef __FUNCT__
30684a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3069273d9f13SBarry Smith /*@C
3070aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3071273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3072273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3073273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3074273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3075273d9f13SBarry Smith 
3076273d9f13SBarry Smith    Collective on Mat
3077273d9f13SBarry Smith 
3078273d9f13SBarry Smith    Input Parameters:
3079273d9f13SBarry Smith +  A - the matrix
3080273d9f13SBarry Smith .  bs   - size of blockk
3081273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3082273d9f13SBarry Smith            submatrix  (same for all local rows)
3083273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3084273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
3085273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
3086273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3087273d9f13SBarry Smith            submatrix (same for all local rows).
3088273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3089273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
3090273d9f13SBarry Smith            each block row) or PETSC_NULL.
3091273d9f13SBarry Smith 
309249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3093273d9f13SBarry Smith 
3094273d9f13SBarry Smith    Options Database Keys:
30958c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30968c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3097273d9f13SBarry Smith 
3098273d9f13SBarry Smith    Notes:
3099273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3100273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3101273d9f13SBarry Smith 
3102273d9f13SBarry Smith    Storage Information:
3103273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3104273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3105273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3106273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3107273d9f13SBarry Smith 
3108273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3109273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
3110273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
3111273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3112273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3113273d9f13SBarry Smith 
3114273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3115273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3116273d9f13SBarry Smith 
3117273d9f13SBarry Smith .vb
3118273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3119273d9f13SBarry Smith           -------------------
3120273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
3121273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
3122273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
3123273d9f13SBarry Smith           -------------------
3124273d9f13SBarry Smith .ve
3125273d9f13SBarry Smith 
3126273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3127273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3128273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3129273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3130273d9f13SBarry Smith 
3131273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3132273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3133273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3134273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3135273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3136273d9f13SBarry Smith    matrices.
3137273d9f13SBarry Smith 
3138aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3139aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3140aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3141aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3142aa95bbe8SBarry Smith 
3143273d9f13SBarry Smith    Level: intermediate
3144273d9f13SBarry Smith 
3145273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3146273d9f13SBarry Smith 
3147aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
3148273d9f13SBarry Smith @*/
3149be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3150273d9f13SBarry Smith {
3151b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
3152273d9f13SBarry Smith 
3153273d9f13SBarry Smith   PetscFunctionBegin;
3154a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3155a23d5eceSKris Buschelman   if (f) {
3156a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3157273d9f13SBarry Smith   }
3158273d9f13SBarry Smith   PetscFunctionReturn(0);
3159273d9f13SBarry Smith }
3160273d9f13SBarry Smith 
31614a2ae208SSatish Balay #undef __FUNCT__
31624a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
316379bdfe76SSatish Balay /*@C
316479bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
316579bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
316679bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
316779bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
316879bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
316979bdfe76SSatish Balay 
3170db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3171db81eaa0SLois Curfman McInnes 
317279bdfe76SSatish Balay    Input Parameters:
3173db81eaa0SLois Curfman McInnes +  comm - MPI communicator
317479bdfe76SSatish Balay .  bs   - size of blockk
317579bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
317692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
317792e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
317892e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
317992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
318092e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3181be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3182be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
318347a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
318479bdfe76SSatish Balay            submatrix  (same for all local rows)
318547a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
318692e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
3187db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
318847a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
318979bdfe76SSatish Balay            submatrix (same for all local rows).
319047a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
319192e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
319292e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
319379bdfe76SSatish Balay 
319479bdfe76SSatish Balay    Output Parameter:
319579bdfe76SSatish Balay .  A - the matrix
319679bdfe76SSatish Balay 
3197db81eaa0SLois Curfman McInnes    Options Database Keys:
31988c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31998c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
32003ffaccefSLois Curfman McInnes 
3201175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3202ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3203175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3204175b88e8SBarry Smith 
3205b259b22eSLois Curfman McInnes    Notes:
320649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
320749a6f317SBarry Smith 
320847a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
320947a75d0bSBarry Smith 
321079bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
321179bdfe76SSatish Balay    (possibly both).
321279bdfe76SSatish Balay 
3213be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3214be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3215be79a94dSBarry Smith 
321679bdfe76SSatish Balay    Storage Information:
321779bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
321879bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
321979bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
322079bdfe76SSatish Balay    local matrix (a rectangular submatrix).
322179bdfe76SSatish Balay 
322279bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
322379bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
322479bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
322579bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
322679bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
322779bdfe76SSatish Balay 
322879bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
322979bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
323079bdfe76SSatish Balay 
3231db81eaa0SLois Curfman McInnes .vb
3232db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3233db81eaa0SLois Curfman McInnes           -------------------
3234db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
3235db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
3236db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
3237db81eaa0SLois Curfman McInnes           -------------------
3238db81eaa0SLois Curfman McInnes .ve
323979bdfe76SSatish Balay 
324079bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
324179bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
324279bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
324357b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
324479bdfe76SSatish Balay 
3245d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3246d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
324779bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
324892e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
324992e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
32506da5968aSLois Curfman McInnes    matrices.
325179bdfe76SSatish Balay 
3252027ccd11SLois Curfman McInnes    Level: intermediate
3253027ccd11SLois Curfman McInnes 
325492e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
325579bdfe76SSatish Balay 
3256aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
325779bdfe76SSatish Balay @*/
3258be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
325979bdfe76SSatish Balay {
32606849ba73SBarry Smith   PetscErrorCode ierr;
3261b24ad042SBarry Smith   PetscMPIInt    size;
326279bdfe76SSatish Balay 
3263d64ed03dSBarry Smith   PetscFunctionBegin;
3264f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3265f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3266d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3267273d9f13SBarry Smith   if (size > 1) {
3268273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3269273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3270273d9f13SBarry Smith   } else {
3271273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3272273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
32733914022bSBarry Smith   }
32743a40ed3dSBarry Smith   PetscFunctionReturn(0);
327579bdfe76SSatish Balay }
3276026e39d0SSatish Balay 
32774a2ae208SSatish Balay #undef __FUNCT__
32784a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
32796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
32800ac07820SSatish Balay {
32810ac07820SSatish Balay   Mat            mat;
32820ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3283dfbe8321SBarry Smith   PetscErrorCode ierr;
3284b24ad042SBarry Smith   PetscInt       len=0;
32850ac07820SSatish Balay 
3286d64ed03dSBarry Smith   PetscFunctionBegin;
32870ac07820SSatish Balay   *newmat       = 0;
32887adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
3289d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
32907adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
32911d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
32927fff6886SHong Zhang 
32934beb1cfeSHong Zhang   mat->factor       = matin->factor;
3294273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32950ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32967fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32977fff6886SHong Zhang 
3298273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
3299d0f46423SBarry Smith   mat->rmap->bs  = matin->rmap->bs;
33000ac07820SSatish Balay   a->bs2   = oldmat->bs2;
33010ac07820SSatish Balay   a->mbs   = oldmat->mbs;
33020ac07820SSatish Balay   a->nbs   = oldmat->nbs;
33030ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
33040ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
33050ac07820SSatish Balay 
330626283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
330726283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3308899cda47SBarry Smith 
33090ac07820SSatish Balay   a->size         = oldmat->size;
33100ac07820SSatish Balay   a->rank         = oldmat->rank;
3311aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3312aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3313aef5e8e0SSatish Balay   a->rowindices   = 0;
33140ac07820SSatish Balay   a->rowvalues    = 0;
33150ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
331630793edcSSatish Balay   a->barray       = 0;
3317899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3318899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3319899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3320899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
33210ac07820SSatish Balay 
3322133cdb44SSatish Balay   /* hash table stuff */
3323133cdb44SSatish Balay   a->ht           = 0;
3324133cdb44SSatish Balay   a->hd           = 0;
3325133cdb44SSatish Balay   a->ht_size      = 0;
3326133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
332725fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3328133cdb44SSatish Balay   a->ht_total_ct  = 0;
3329133cdb44SSatish Balay   a->ht_insert_ct = 0;
3330133cdb44SSatish Balay 
3331899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
33327adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
3333d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
33340ac07820SSatish Balay   if (oldmat->colmap) {
3335aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
33360f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
333748e59246SSatish Balay #else
3338b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
333952e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3340b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
334148e59246SSatish Balay #endif
33420ac07820SSatish Balay   } else a->colmap = 0;
33434beb1cfeSHong Zhang 
33440ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3345b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
334652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3347b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
33480ac07820SSatish Balay   } else a->garray = 0;
33490ac07820SSatish Balay 
33500ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
335152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
33520ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
335352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
33547fff6886SHong Zhang 
33552e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
335652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
33572e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
335852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
33597adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
33600ac07820SSatish Balay   *newmat = mat;
33614beb1cfeSHong Zhang 
33623a40ed3dSBarry Smith   PetscFunctionReturn(0);
33630ac07820SSatish Balay }
336457b952d6SSatish Balay 
3365e090d566SSatish Balay #include "petscsys.h"
336657b952d6SSatish Balay 
33674a2ae208SSatish Balay #undef __FUNCT__
33684a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
3369a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
337057b952d6SSatish Balay {
337157b952d6SSatish Balay   Mat            A;
33726849ba73SBarry Smith   PetscErrorCode ierr;
3373b24ad042SBarry Smith   int            fd;
3374b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
337587828ca2SBarry Smith   PetscScalar    *vals,*buf;
337657b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
337757b952d6SSatish Balay   MPI_Status     status;
3378b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
3379b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
3380910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
3381167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
3382dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
3383910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
3384dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
338557b952d6SSatish Balay 
3386d64ed03dSBarry Smith   PetscFunctionBegin;
338777925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
33888c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
33898c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
339057b952d6SSatish Balay 
3391d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3392d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
339357b952d6SSatish Balay   if (!rank) {
3394b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
3395e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
3396552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
33976c5fab8fSBarry Smith   }
3398d64ed03dSBarry Smith 
3399b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
340057b952d6SSatish Balay   M = header[1]; N = header[2];
340157b952d6SSatish Balay 
340229bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
340357b952d6SSatish Balay 
340457b952d6SSatish Balay   /*
340557b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
340657b952d6SSatish Balay      divisible by the blocksize
340757b952d6SSatish Balay   */
340857b952d6SSatish Balay   Mbs        = M/bs;
3409dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
341057b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
341157b952d6SSatish Balay   else                  Mbs++;
341257b952d6SSatish Balay   if (extra_rows && !rank) {
34131e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
341457b952d6SSatish Balay   }
3415537820f0SBarry Smith 
341657b952d6SSatish Balay   /* determine ownership of all rows */
341757b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
341857b952d6SSatish Balay   m          = mbs*bs;
3419dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
3420b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
3421167e7480SBarry Smith 
3422167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
3423167e7480SBarry Smith   if (!rank) {
3424167e7480SBarry Smith     mmax = rowners[1];
3425167e7480SBarry Smith     for (i=2; i<size; i++) {
3426167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
3427167e7480SBarry Smith     }
3428ca02efcfSSatish Balay     mmax*=bs;
3429167e7480SBarry Smith   } else mmax = m;
3430167e7480SBarry Smith 
343157b952d6SSatish Balay   rowners[0] = 0;
3432cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
3433cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
343457b952d6SSatish Balay   rstart = rowners[rank];
343557b952d6SSatish Balay   rend   = rowners[rank+1];
343657b952d6SSatish Balay 
343757b952d6SSatish Balay   /* distribute row lengths to all processors */
343819c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
343957b952d6SSatish Balay   if (!rank) {
3440dc231df0SBarry Smith     mend = m;
3441dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
3442dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
3443dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
3444dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
3445b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
3446b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
3447dc231df0SBarry Smith     for (j=0; j<m; j++) {
3448dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
3449dc231df0SBarry Smith     }
3450dc231df0SBarry Smith     for (i=1; i<size; i++) {
3451dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
3452dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
3453dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
3454dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
3455dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
3456dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
345757b952d6SSatish Balay         procsnz[i] += rowlengths[j];
345857b952d6SSatish Balay       }
3459dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
346057b952d6SSatish Balay     }
3461606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3462dc231df0SBarry Smith   } else {
3463dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3464dc231df0SBarry Smith   }
346557b952d6SSatish Balay 
3466dc231df0SBarry Smith   if (!rank) {
346757b952d6SSatish Balay     /* determine max buffer needed and allocate it */
34688a8e0b3aSBarry Smith     maxnz = procsnz[0];
3469cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
347057b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
347157b952d6SSatish Balay     }
3472b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
347357b952d6SSatish Balay 
347457b952d6SSatish Balay     /* read in my part of the matrix column indices  */
347557b952d6SSatish Balay     nz     = procsnz[0];
347619c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
347757b952d6SSatish Balay     mycols = ibuf;
3478cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3479e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
3480cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
3481cee3aa6bSSatish Balay 
348257b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
348357b952d6SSatish Balay     for (i=1; i<size-1; i++) {
348457b952d6SSatish Balay       nz   = procsnz[i];
3485e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
3486b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
348757b952d6SSatish Balay     }
348857b952d6SSatish Balay     /* read in the stuff for the last proc */
348957b952d6SSatish Balay     if (size != 1) {
349057b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
3491e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
349257b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
3493b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
349457b952d6SSatish Balay     }
3495606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
3496d64ed03dSBarry Smith   } else {
349757b952d6SSatish Balay     /* determine buffer space needed for message */
349857b952d6SSatish Balay     nz = 0;
349957b952d6SSatish Balay     for (i=0; i<m; i++) {
350057b952d6SSatish Balay       nz += locrowlens[i];
350157b952d6SSatish Balay     }
350219c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
350357b952d6SSatish Balay     mycols = ibuf;
350457b952d6SSatish Balay     /* receive message of column indices*/
3505b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3506b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
350729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
350857b952d6SSatish Balay   }
350957b952d6SSatish Balay 
351057b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
3511dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
3512dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
3513dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3514dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3515dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
351657b952d6SSatish Balay   rowcount = 0; nzcount = 0;
351757b952d6SSatish Balay   for (i=0; i<mbs; i++) {
351857b952d6SSatish Balay     dcount  = 0;
351957b952d6SSatish Balay     odcount = 0;
352057b952d6SSatish Balay     for (j=0; j<bs; j++) {
352157b952d6SSatish Balay       kmax = locrowlens[rowcount];
352257b952d6SSatish Balay       for (k=0; k<kmax; k++) {
352357b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
352457b952d6SSatish Balay         if (!mask[tmp]) {
352557b952d6SSatish Balay           mask[tmp] = 1;
352657b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
352757b952d6SSatish Balay           else masked1[dcount++] = tmp;
352857b952d6SSatish Balay         }
352957b952d6SSatish Balay       }
353057b952d6SSatish Balay       rowcount++;
353157b952d6SSatish Balay     }
3532cee3aa6bSSatish Balay 
353357b952d6SSatish Balay     dlens[i]  = dcount;
353457b952d6SSatish Balay     odlens[i] = odcount;
3535cee3aa6bSSatish Balay 
353657b952d6SSatish Balay     /* zero out the mask elements we set */
353757b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
353857b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
353957b952d6SSatish Balay   }
3540cee3aa6bSSatish Balay 
354157b952d6SSatish Balay   /* create our matrix */
3542f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
3543f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
354478ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
354578ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
354678ae41b4SKris Buschelman 
354757b952d6SSatish Balay   if (!rank) {
354819c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
354957b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
355057b952d6SSatish Balay     nz = procsnz[0];
355157b952d6SSatish Balay     vals = buf;
3552cee3aa6bSSatish Balay     mycols = ibuf;
3553cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3554e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3555cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
3556537820f0SBarry Smith 
355757b952d6SSatish Balay     /* insert into matrix */
355857b952d6SSatish Balay     jj      = rstart*bs;
355957b952d6SSatish Balay     for (i=0; i<m; i++) {
3560dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
356157b952d6SSatish Balay       mycols += locrowlens[i];
356257b952d6SSatish Balay       vals   += locrowlens[i];
356357b952d6SSatish Balay       jj++;
356457b952d6SSatish Balay     }
356557b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
356657b952d6SSatish Balay     for (i=1; i<size-1; i++) {
356757b952d6SSatish Balay       nz   = procsnz[i];
356857b952d6SSatish Balay       vals = buf;
3569e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
35707adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
357157b952d6SSatish Balay     }
357257b952d6SSatish Balay     /* the last proc */
357357b952d6SSatish Balay     if (size != 1){
357457b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
3575cee3aa6bSSatish Balay       vals = buf;
3576e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
357757b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
35787adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
357957b952d6SSatish Balay     }
3580606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
3581d64ed03dSBarry Smith   } else {
358257b952d6SSatish Balay     /* receive numeric values */
358319c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
358457b952d6SSatish Balay 
358557b952d6SSatish Balay     /* receive message of values*/
358657b952d6SSatish Balay     vals   = buf;
3587cee3aa6bSSatish Balay     mycols = ibuf;
35887adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
3589ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
359029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
359157b952d6SSatish Balay 
359257b952d6SSatish Balay     /* insert into matrix */
359357b952d6SSatish Balay     jj      = rstart*bs;
3594cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
3595dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
359657b952d6SSatish Balay       mycols += locrowlens[i];
359757b952d6SSatish Balay       vals   += locrowlens[i];
359857b952d6SSatish Balay       jj++;
359957b952d6SSatish Balay     }
360057b952d6SSatish Balay   }
3601606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
3602606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
3603606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
3604dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
3605dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
3606dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
36076d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36086d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
360978ae41b4SKris Buschelman 
361078ae41b4SKris Buschelman   *newmat = A;
36113a40ed3dSBarry Smith   PetscFunctionReturn(0);
361257b952d6SSatish Balay }
361357b952d6SSatish Balay 
36144a2ae208SSatish Balay #undef __FUNCT__
36154a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3616133cdb44SSatish Balay /*@
3617133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3618133cdb44SSatish Balay 
3619133cdb44SSatish Balay    Input Parameters:
3620133cdb44SSatish Balay .  mat  - the matrix
3621133cdb44SSatish Balay .  fact - factor
3622133cdb44SSatish Balay 
3623fee21e36SBarry Smith    Collective on Mat
3624fee21e36SBarry Smith 
36258c890885SBarry Smith    Level: advanced
36268c890885SBarry Smith 
3627133cdb44SSatish Balay   Notes:
36288c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3629133cdb44SSatish Balay 
3630133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3631133cdb44SSatish Balay 
3632133cdb44SSatish Balay .seealso: MatSetOption()
3633133cdb44SSatish Balay @*/
3634be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3635133cdb44SSatish Balay {
3636dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
36375bf65638SKris Buschelman 
36385bf65638SKris Buschelman   PetscFunctionBegin;
36395bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
36405bf65638SKris Buschelman   if (f) {
36415bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
36425bf65638SKris Buschelman   }
36435bf65638SKris Buschelman   PetscFunctionReturn(0);
36445bf65638SKris Buschelman }
36455bf65638SKris Buschelman 
3646be1d678aSKris Buschelman EXTERN_C_BEGIN
36475bf65638SKris Buschelman #undef __FUNCT__
36485bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
3649be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
36505bf65638SKris Buschelman {
365125fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3652133cdb44SSatish Balay 
3653133cdb44SSatish Balay   PetscFunctionBegin;
3654133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
3655133cdb44SSatish Balay   baij->ht_fact = fact;
3656133cdb44SSatish Balay   PetscFunctionReturn(0);
3657133cdb44SSatish Balay }
3658be1d678aSKris Buschelman EXTERN_C_END
3659f2a5309cSSatish Balay 
36604a2ae208SSatish Balay #undef __FUNCT__
36614a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
3662be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
3663f2a5309cSSatish Balay {
3664f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3665f2a5309cSSatish Balay   PetscFunctionBegin;
3666f2a5309cSSatish Balay   *Ad     = a->A;
3667f2a5309cSSatish Balay   *Ao     = a->B;
3668195d93cdSBarry Smith   *colmap = a->garray;
3669f2a5309cSSatish Balay   PetscFunctionReturn(0);
3670f2a5309cSSatish Balay }
367185535b8eSBarry Smith 
367285535b8eSBarry Smith /*
367385535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
367485535b8eSBarry Smith */
367585535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
367685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
367785535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
367885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
367985535b8eSBarry Smith #endif
368085535b8eSBarry Smith 
368185535b8eSBarry Smith #undef __FUNCT__
368285535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
368385535b8eSBarry Smith /*@C
368485535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
368585535b8eSBarry Smith 
368685535b8eSBarry Smith   Collective on Mat
368785535b8eSBarry Smith 
368885535b8eSBarry Smith   Input Parameters:
368985535b8eSBarry Smith + mat - the matrix
369085535b8eSBarry Smith . min - number of input rows
369185535b8eSBarry Smith . im - input rows
369285535b8eSBarry Smith . nin - number of input columns
369385535b8eSBarry Smith . in - input columns
369485535b8eSBarry Smith . v - numerical values input
369585535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
369685535b8eSBarry Smith 
369785535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
369885535b8eSBarry Smith 
369985535b8eSBarry Smith   Level: advanced
370085535b8eSBarry Smith 
370185535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
370285535b8eSBarry Smith @*/
370385535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
370485535b8eSBarry Smith {
370585535b8eSBarry Smith   /* convert input arguments to C version */
370685535b8eSBarry Smith   Mat             mat = *matin;
370785535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
370885535b8eSBarry Smith   InsertMode      addv = *addvin;
370985535b8eSBarry Smith 
371085535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
371185535b8eSBarry Smith   const MatScalar *value;
371285535b8eSBarry Smith   MatScalar       *barray=baij->barray;
371385535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
371485535b8eSBarry Smith   PetscErrorCode  ierr;
371585535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
371685535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3717d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
371885535b8eSBarry Smith 
371985535b8eSBarry Smith   PetscFunctionBegin;
372085535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
372185535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
372285535b8eSBarry Smith     mat->insertmode = addv;
372385535b8eSBarry Smith   }
372485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
372585535b8eSBarry Smith   else if (mat->insertmode != addv) {
372685535b8eSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
372785535b8eSBarry Smith   }
372885535b8eSBarry Smith   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
372985535b8eSBarry Smith #endif
373085535b8eSBarry Smith   if (mat->assembled) {
373185535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
373285535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
373385535b8eSBarry Smith   }
373485535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
373585535b8eSBarry Smith 
373685535b8eSBarry Smith 
373785535b8eSBarry Smith   if(!barray) {
373885535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
373985535b8eSBarry Smith     baij->barray = barray;
374085535b8eSBarry Smith   }
374185535b8eSBarry Smith 
374285535b8eSBarry Smith   if (roworiented) {
374385535b8eSBarry Smith     stepval = (n-1)*bs;
374485535b8eSBarry Smith   } else {
374585535b8eSBarry Smith     stepval = (m-1)*bs;
374685535b8eSBarry Smith   }
374785535b8eSBarry Smith   for (i=0; i<m; i++) {
374885535b8eSBarry Smith     if (im[i] < 0) continue;
374985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
375085535b8eSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
375185535b8eSBarry Smith #endif
375285535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
375385535b8eSBarry Smith       row = im[i] - rstart;
375485535b8eSBarry Smith       for (j=0; j<n; j++) {
375585535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
375685535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
375785535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
375885535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
375985535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
376085535b8eSBarry Smith         } else { /* Here a copy is required */
376185535b8eSBarry Smith           if (roworiented) {
376285535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
376385535b8eSBarry Smith           } else {
376485535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
376585535b8eSBarry Smith           }
376685535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
376785535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
376885535b8eSBarry Smith               *barray++  = *value++;
376985535b8eSBarry Smith             }
377085535b8eSBarry Smith           }
377185535b8eSBarry Smith           barray -=bs2;
377285535b8eSBarry Smith         }
377385535b8eSBarry Smith 
377485535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
377585535b8eSBarry Smith           col  = in[j] - cstart;
377697e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
377785535b8eSBarry Smith         }
377885535b8eSBarry Smith         else if (in[j] < 0) continue;
377985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
378085535b8eSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
378185535b8eSBarry Smith #endif
378285535b8eSBarry Smith         else {
378385535b8eSBarry Smith           if (mat->was_assembled) {
378485535b8eSBarry Smith             if (!baij->colmap) {
378585535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
378685535b8eSBarry Smith             }
378785535b8eSBarry Smith 
378885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
378985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
379085535b8eSBarry Smith             { PetscInt data;
379185535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
379285535b8eSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
379385535b8eSBarry Smith             }
379485535b8eSBarry Smith #else
379585535b8eSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
379685535b8eSBarry Smith #endif
379785535b8eSBarry Smith #endif
379885535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
379985535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
380085535b8eSBarry Smith             col  = (col - 1)/bs;
380185535b8eSBarry Smith #else
380285535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
380385535b8eSBarry Smith #endif
380485535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
380585535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
380685535b8eSBarry Smith               col =  in[j];
380785535b8eSBarry Smith             }
380885535b8eSBarry Smith           }
380985535b8eSBarry Smith           else col = in[j];
381097e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
381185535b8eSBarry Smith         }
381285535b8eSBarry Smith       }
381385535b8eSBarry Smith     } else {
381485535b8eSBarry Smith       if (!baij->donotstash) {
381585535b8eSBarry Smith         if (roworiented) {
381685535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
381785535b8eSBarry Smith         } else {
381885535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
381985535b8eSBarry Smith         }
382085535b8eSBarry Smith       }
382185535b8eSBarry Smith     }
382285535b8eSBarry Smith   }
382385535b8eSBarry Smith 
382485535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
382585535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
382685535b8eSBarry Smith   PetscFunctionReturn(0);
382785535b8eSBarry Smith }
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