1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 21957b952d6SSatish Balay for (i=0; i<m; i++) { 2205ef9f2a5SBarry Smith if (im[i] < 0) continue; 2212515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 222d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 223639f9d9dSBarry Smith #endif 22457b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22557b952d6SSatish Balay row = im[i] - rstart_orig; 22657b952d6SSatish Balay for (j=0; j<n; j++) { 22757b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22857b952d6SSatish Balay col = in[j] - cstart_orig; 22957b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23180c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23273959e64SBarry Smith } else if (in[j] < 0) continue; 2332515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 234d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 235639f9d9dSBarry Smith #endif 23657b952d6SSatish Balay else { 23757b952d6SSatish Balay if (mat->was_assembled) { 238905e6a2fSBarry Smith if (!baij->colmap) { 239905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 240905e6a2fSBarry Smith } 241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 243bba1ac68SSatish Balay col = col - 1; 24448e59246SSatish Balay #else 245bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24648e59246SSatish Balay #endif 24757b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24857b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2498295de27SSatish Balay col = in[j]; 2509bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2519bf004c3SSatish Balay B = baij->B; 2529bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2539bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2549bf004c3SSatish Balay ba=b->a; 255bba1ac68SSatish Balay } else col += in[j]%bs; 2568295de27SSatish Balay } else col = in[j]; 25757b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25890da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25990da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 26057b952d6SSatish Balay } 26157b952d6SSatish Balay } 262d64ed03dSBarry Smith } else { 26390f02eecSBarry Smith if (!baij->donotstash) { 264ff2fd236SBarry Smith if (roworiented) { 265b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 266ff2fd236SBarry Smith } else { 267b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27190f02eecSBarry Smith } 2723a40ed3dSBarry Smith PetscFunctionReturn(0); 27357b952d6SSatish Balay } 27457b952d6SSatish Balay 2754a2ae208SSatish Balay #undef __FUNCT__ 27697e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 278ab26458aSBarry Smith { 279ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 280dd6ea824SBarry Smith const PetscScalar *value; 281f15d580aSBarry Smith MatScalar *barray=baij->barray; 282273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 283dfbe8321SBarry Smith PetscErrorCode ierr; 284899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 285899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 286d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 287ab26458aSBarry Smith 288b16ae2b1SBarry Smith PetscFunctionBegin; 28930793edcSSatish Balay if(!barray) { 29082502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29182502324SSatish Balay baij->barray = barray; 29230793edcSSatish Balay } 29330793edcSSatish Balay 294ab26458aSBarry Smith if (roworiented) { 295ab26458aSBarry Smith stepval = (n-1)*bs; 296ab26458aSBarry Smith } else { 297ab26458aSBarry Smith stepval = (m-1)*bs; 298ab26458aSBarry Smith } 299ab26458aSBarry Smith for (i=0; i<m; i++) { 3005ef9f2a5SBarry Smith if (im[i] < 0) continue; 3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 303ab26458aSBarry Smith #endif 304ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 305ab26458aSBarry Smith row = im[i] - rstart; 306ab26458aSBarry Smith for (j=0; j<n; j++) { 30715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 309f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31015b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 311f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31215b57d14SSatish Balay } else { /* Here a copy is required */ 313ab26458aSBarry Smith if (roworiented) { 314ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 315ab26458aSBarry Smith } else { 316ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 317abef11f7SSatish Balay } 31847513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31947513183SBarry Smith for (jj=0; jj<bs; jj++) { 32030793edcSSatish Balay *barray++ = *value++; 32147513183SBarry Smith } 32247513183SBarry Smith } 32330793edcSSatish Balay barray -=bs2; 32415b57d14SSatish Balay } 325abef11f7SSatish Balay 326abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 327abef11f7SSatish Balay col = in[j] - cstart; 32897e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 329ab26458aSBarry Smith } 3305ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3312515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 333ab26458aSBarry Smith #endif 334ab26458aSBarry Smith else { 335ab26458aSBarry Smith if (mat->was_assembled) { 336ab26458aSBarry Smith if (!baij->colmap) { 337ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 338ab26458aSBarry Smith } 339a5eb4965SSatish Balay 3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 341aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 342b24ad042SBarry Smith { PetscInt data; 3430f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34429bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 345fa46199cSSatish Balay } 34648e59246SSatish Balay #else 34729bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 348a5eb4965SSatish Balay #endif 34948e59246SSatish Balay #endif 350aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3510f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 352fa46199cSSatish Balay col = (col - 1)/bs; 35348e59246SSatish Balay #else 354a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35548e59246SSatish Balay #endif 356ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 357ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 358ab26458aSBarry Smith col = in[j]; 359ab26458aSBarry Smith } 360ab26458aSBarry Smith } 361ab26458aSBarry Smith else col = in[j]; 36297e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 363ab26458aSBarry Smith } 364ab26458aSBarry Smith } 365d64ed03dSBarry Smith } else { 366ab26458aSBarry Smith if (!baij->donotstash) { 367ff2fd236SBarry Smith if (roworiented) { 3686fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 369ff2fd236SBarry Smith } else { 3706fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 371ff2fd236SBarry Smith } 372abef11f7SSatish Balay } 373ab26458aSBarry Smith } 374ab26458aSBarry Smith } 3753a40ed3dSBarry Smith PetscFunctionReturn(0); 376ab26458aSBarry Smith } 3776fa18ffdSBarry Smith 3780bdbc534SSatish Balay #define HASH_KEY 0.6180339887 379b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 380b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 381b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3824a2ae208SSatish Balay #undef __FUNCT__ 38397e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38497e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3850bdbc534SSatish Balay { 3860bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 387273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 388dfbe8321SBarry Smith PetscErrorCode ierr; 389b24ad042SBarry Smith PetscInt i,j,row,col; 390d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 391d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 392d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 393329f5518SBarry Smith PetscReal tmp; 3943eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3952515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 396b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3974a15367fSSatish Balay #endif 3980bdbc534SSatish Balay 3990bdbc534SSatish Balay PetscFunctionBegin; 40071fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4010bdbc534SSatish Balay for (i=0; i<m; i++) { 4022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40329bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 404d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4050bdbc534SSatish Balay #endif 4060bdbc534SSatish Balay row = im[i]; 407c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4080bdbc534SSatish Balay for (j=0; j<n; j++) { 4090bdbc534SSatish Balay col = in[j]; 4106fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 411b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 412c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 413c2760754SSatish Balay h1 = HASH(size,key,tmp); 4140bdbc534SSatish Balay 415c2760754SSatish Balay 416c2760754SSatish Balay idx = h1; 4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 418187ce0cbSSatish Balay insert_ct++; 419187ce0cbSSatish Balay total_ct++; 420187ce0cbSSatish Balay if (HT[idx] != key) { 421187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 422187ce0cbSSatish Balay if (idx == size) { 423187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 424187ce0cbSSatish Balay if (idx == h1) { 42577431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay } 429187ce0cbSSatish Balay #else 430c2760754SSatish Balay if (HT[idx] != key) { 431c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 432c2760754SSatish Balay if (idx == size) { 433c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 434c2760754SSatish Balay if (idx == h1) { 43577431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438c2760754SSatish Balay } 439187ce0cbSSatish Balay #endif 440c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 441c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 442c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4430bdbc534SSatish Balay } 4440bdbc534SSatish Balay } else { 4450bdbc534SSatish Balay if (!baij->donotstash) { 446ff2fd236SBarry Smith if (roworiented) { 447b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 448ff2fd236SBarry Smith } else { 449b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay } 4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 455187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 456187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 457187ce0cbSSatish Balay #endif 4580bdbc534SSatish Balay PetscFunctionReturn(0); 4590bdbc534SSatish Balay } 4600bdbc534SSatish Balay 4614a2ae208SSatish Balay #undef __FUNCT__ 46297e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46397e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4640bdbc534SSatish Balay { 4650bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 466273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 467dfbe8321SBarry Smith PetscErrorCode ierr; 468b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 469899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 470d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 471b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 472329f5518SBarry Smith PetscReal tmp; 4733eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 474dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 476b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4774a15367fSSatish Balay #endif 4780bdbc534SSatish Balay 479d0a41580SSatish Balay PetscFunctionBegin; 480d0a41580SSatish Balay 4810bdbc534SSatish Balay if (roworiented) { 4820bdbc534SSatish Balay stepval = (n-1)*bs; 4830bdbc534SSatish Balay } else { 4840bdbc534SSatish Balay stepval = (m-1)*bs; 4850bdbc534SSatish Balay } 4860bdbc534SSatish Balay for (i=0; i<m; i++) { 4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48877431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48977431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4900bdbc534SSatish Balay #endif 4910bdbc534SSatish Balay row = im[i]; 492ab715e2cSSatish Balay v_t = v + i*nbs2; 493c2760754SSatish Balay if (row >= rstart && row < rend) { 4940bdbc534SSatish Balay for (j=0; j<n; j++) { 4950bdbc534SSatish Balay col = in[j]; 4960bdbc534SSatish Balay 4970bdbc534SSatish Balay /* Look up into the Hash Table */ 498c2760754SSatish Balay key = row*Nbs+col+1; 499c2760754SSatish Balay h1 = HASH(size,key,tmp); 5000bdbc534SSatish Balay 501c2760754SSatish Balay idx = h1; 5022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 503187ce0cbSSatish Balay total_ct++; 504187ce0cbSSatish Balay insert_ct++; 505187ce0cbSSatish Balay if (HT[idx] != key) { 506187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 507187ce0cbSSatish Balay if (idx == size) { 508187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 509187ce0cbSSatish Balay if (idx == h1) { 51077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay } 514187ce0cbSSatish Balay #else 515c2760754SSatish Balay if (HT[idx] != key) { 516c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 517c2760754SSatish Balay if (idx == size) { 518c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 519c2760754SSatish Balay if (idx == h1) { 52077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523c2760754SSatish Balay } 524187ce0cbSSatish Balay #endif 525c2760754SSatish Balay baij_a = HD[idx]; 5260bdbc534SSatish Balay if (roworiented) { 527c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 528187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 529187ce0cbSSatish Balay value = v_t; 530187ce0cbSSatish Balay v_t += bs; 531fef45726SSatish Balay if (addv == ADD_VALUES) { 532c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 533c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 534fef45726SSatish Balay baij_a[jj] += *value++; 535b4cc0f5aSSatish Balay } 536b4cc0f5aSSatish Balay } 537fef45726SSatish Balay } else { 538c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 539c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 540fef45726SSatish Balay baij_a[jj] = *value++; 541fef45726SSatish Balay } 542fef45726SSatish Balay } 543fef45726SSatish Balay } 5440bdbc534SSatish Balay } else { 5450bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 546fef45726SSatish Balay if (addv == ADD_VALUES) { 547b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5480bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 549fef45726SSatish Balay baij_a[jj] += *value++; 550fef45726SSatish Balay } 551fef45726SSatish Balay } 552fef45726SSatish Balay } else { 553fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 554fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 555fef45726SSatish Balay baij_a[jj] = *value++; 556fef45726SSatish Balay } 557b4cc0f5aSSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } 5610bdbc534SSatish Balay } else { 5620bdbc534SSatish Balay if (!baij->donotstash) { 5630bdbc534SSatish Balay if (roworiented) { 5648798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5650bdbc534SSatish Balay } else { 5668798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5700bdbc534SSatish Balay } 5712515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 572187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 573187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 574187ce0cbSSatish Balay #endif 5750bdbc534SSatish Balay PetscFunctionReturn(0); 5760bdbc534SSatish Balay } 577133cdb44SSatish Balay 5784a2ae208SSatish Balay #undef __FUNCT__ 5794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 580b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 581d6de1c52SSatish Balay { 582d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5836849ba73SBarry Smith PetscErrorCode ierr; 584d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 585d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 586d6de1c52SSatish Balay 587133cdb44SSatish Balay PetscFunctionBegin; 588d6de1c52SSatish Balay for (i=0; i<m; i++) { 58997e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 590d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 591d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 592d6de1c52SSatish Balay row = idxm[i] - bsrstart; 593d6de1c52SSatish Balay for (j=0; j<n; j++) { 59497e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 595d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 596d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 597d6de1c52SSatish Balay col = idxn[j] - bscstart; 59898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 599d64ed03dSBarry Smith } else { 600905e6a2fSBarry Smith if (!baij->colmap) { 601905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 602905e6a2fSBarry Smith } 603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6040f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 605fa46199cSSatish Balay data --; 60648e59246SSatish Balay #else 60748e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60848e59246SSatish Balay #endif 60948e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 610d9d09a02SSatish Balay else { 61148e59246SSatish Balay col = data + idxn[j]%bs; 61298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d6de1c52SSatish Balay } 616d64ed03dSBarry Smith } else { 61729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 618d6de1c52SSatish Balay } 619d6de1c52SSatish Balay } 6203a40ed3dSBarry Smith PetscFunctionReturn(0); 621d6de1c52SSatish Balay } 622d6de1c52SSatish Balay 6234a2ae208SSatish Balay #undef __FUNCT__ 6244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 625dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 626d6de1c52SSatish Balay { 627d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 628d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 629dfbe8321SBarry Smith PetscErrorCode ierr; 630d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 631329f5518SBarry Smith PetscReal sum = 0.0; 6323eda8832SBarry Smith MatScalar *v; 633d6de1c52SSatish Balay 634d64ed03dSBarry Smith PetscFunctionBegin; 635d6de1c52SSatish Balay if (baij->size == 1) { 636064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 637d6de1c52SSatish Balay } else { 638d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 639d6de1c52SSatish Balay v = amat->a; 6408a62d963SHong Zhang nz = amat->nz*bs2; 6418a62d963SHong Zhang for (i=0; i<nz; i++) { 642aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 643329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 644d6de1c52SSatish Balay #else 645d6de1c52SSatish Balay sum += (*v)*(*v); v++; 646d6de1c52SSatish Balay #endif 647d6de1c52SSatish Balay } 648d6de1c52SSatish Balay v = bmat->a; 6498a62d963SHong Zhang nz = bmat->nz*bs2; 6508a62d963SHong Zhang for (i=0; i<nz; i++) { 651aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 652329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 653d6de1c52SSatish Balay #else 654d6de1c52SSatish Balay sum += (*v)*(*v); v++; 655d6de1c52SSatish Balay #endif 656d6de1c52SSatish Balay } 6577adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 658064f8208SBarry Smith *nrm = sqrt(*nrm); 6598a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6608a62d963SHong Zhang PetscReal *tmp,*tmp2; 661899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 662*fca92195SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr); 663d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6648a62d963SHong Zhang v = amat->a; jj = amat->j; 6658a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6668a62d963SHong Zhang for (j=0; j<bs; j++){ 6678a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6688a62d963SHong Zhang for (row=0; row<bs; row++){ 6698a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6708a62d963SHong Zhang } 6718a62d963SHong Zhang } 6728a62d963SHong Zhang jj++; 6738a62d963SHong Zhang } 6748a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6758a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6768a62d963SHong Zhang for (j=0; j<bs; j++){ 6778a62d963SHong Zhang col = bs*garray[*jj] + j; 6788a62d963SHong Zhang for (row=0; row<bs; row++){ 6798a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6808a62d963SHong Zhang } 6818a62d963SHong Zhang } 6828a62d963SHong Zhang jj++; 6838a62d963SHong Zhang } 684d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6858a62d963SHong Zhang *nrm = 0.0; 686d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6878a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6888a62d963SHong Zhang } 689*fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6908a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 691577dd1f9SKris Buschelman PetscReal *sums; 692577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6938a62d963SHong Zhang sum = 0.0; 6948a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6958a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6968a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6978a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6988a62d963SHong Zhang for (i=0; i<nz; i++) { 6998a62d963SHong Zhang for (col=0; col<bs; col++){ 7008a62d963SHong Zhang for (row=0; row<bs; row++){ 7018a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7068a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7078a62d963SHong Zhang for (i=0; i<nz; i++) { 7088a62d963SHong Zhang for (col=0; col<bs; col++){ 7098a62d963SHong Zhang for (row=0; row<bs; row++){ 7108a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang for (row=0; row<bs; row++){ 7158a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7187adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 719577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 720d64ed03dSBarry Smith } else { 72129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 722d6de1c52SSatish Balay } 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743*fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753*fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 754fef45726SSatish Balay 755*fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 756*fca92195SBarry Smith ht_size = baij->ht_size; 7570bdbc534SSatish Balay 758fef45726SSatish Balay /* Allocate Memory for Hash Table */ 759*fca92195SBarry Smith ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr); 760*fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 761*fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 762b9e4cc15SSatish Balay HD = baij->hd; 763a07cd24cSSatish Balay HT = baij->ht; 764b9e4cc15SSatish Balay 765596b8d2eSBarry Smith /* Loop Over A */ 7660bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 767596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7680bdbc534SSatish Balay row = i+rstart; 7690bdbc534SSatish Balay col = aj[j]+cstart; 770596b8d2eSBarry Smith 771187ce0cbSSatish Balay key = row*Nbs + col + 1; 772*fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 773*fca92195SBarry Smith for (k=0; k<ht_size; k++){ 774*fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 775*fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 776*fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 777596b8d2eSBarry Smith break; 7786cf91177SBarry Smith #if defined(PETSC_USE_INFO) 779187ce0cbSSatish Balay } else { 780187ce0cbSSatish Balay ct++; 781187ce0cbSSatish Balay #endif 782596b8d2eSBarry Smith } 783187ce0cbSSatish Balay } 7846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 785187ce0cbSSatish Balay if (k> max) max = k; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788596b8d2eSBarry Smith } 789596b8d2eSBarry Smith /* Loop Over B */ 7900bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 791596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7920bdbc534SSatish Balay row = i+rstart; 7930bdbc534SSatish Balay col = garray[bj[j]]; 794187ce0cbSSatish Balay key = row*Nbs + col + 1; 795*fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 796*fca92195SBarry Smith for (k=0; k<ht_size; k++){ 797*fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 798*fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 799*fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 800596b8d2eSBarry Smith break; 8016cf91177SBarry Smith #if defined(PETSC_USE_INFO) 802187ce0cbSSatish Balay } else { 803187ce0cbSSatish Balay ct++; 804187ce0cbSSatish Balay #endif 805596b8d2eSBarry Smith } 806187ce0cbSSatish Balay } 8076cf91177SBarry Smith #if defined(PETSC_USE_INFO) 808187ce0cbSSatish Balay if (k> max) max = k; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811596b8d2eSBarry Smith } 812596b8d2eSBarry Smith 813596b8d2eSBarry Smith /* Print Summary */ 8146cf91177SBarry Smith #if defined(PETSC_USE_INFO) 815*fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 816596b8d2eSBarry Smith if (HT[i]) {j++;} 817c38d4ed2SBarry Smith } 8181e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 819187ce0cbSSatish Balay #endif 8203a40ed3dSBarry Smith PetscFunctionReturn(0); 821596b8d2eSBarry Smith } 82257b952d6SSatish Balay 8234a2ae208SSatish Balay #undef __FUNCT__ 8244a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 825dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 826bbb85fb3SSatish Balay { 827bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 828dfbe8321SBarry Smith PetscErrorCode ierr; 829b24ad042SBarry Smith PetscInt nstash,reallocs; 830bbb85fb3SSatish Balay InsertMode addv; 831bbb85fb3SSatish Balay 832bbb85fb3SSatish Balay PetscFunctionBegin; 833bbb85fb3SSatish Balay if (baij->donotstash) { 834bbb85fb3SSatish Balay PetscFunctionReturn(0); 835bbb85fb3SSatish Balay } 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8387adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 839bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 841bbb85fb3SSatish Balay } 842bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 843bbb85fb3SSatish Balay 844d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8451e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8468798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8471e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 84846680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8491e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 850bbb85fb3SSatish Balay PetscFunctionReturn(0); 851bbb85fb3SSatish Balay } 852bbb85fb3SSatish Balay 8534a2ae208SSatish Balay #undef __FUNCT__ 8544a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 855dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 856bbb85fb3SSatish Balay { 857bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85891c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8596849ba73SBarry Smith PetscErrorCode ierr; 860b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 861e44c0bd4SBarry Smith PetscInt *row,*col; 862e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8633eda8832SBarry Smith MatScalar *val; 864bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 865b24ad042SBarry Smith PetscMPIInt n; 866bbb85fb3SSatish Balay 86791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 868bbb85fb3SSatish Balay PetscFunctionBegin; 869bbb85fb3SSatish Balay if (!baij->donotstash) { 870a2d1c673SSatish Balay while (1) { 8718798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 872a2d1c673SSatish Balay if (!flg) break; 873a2d1c673SSatish Balay 874bbb85fb3SSatish Balay for (i=0; i<n;) { 875bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 876bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 877bbb85fb3SSatish Balay if (j < n) ncols = j-i; 878bbb85fb3SSatish Balay else ncols = n-i; 879bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 881bbb85fb3SSatish Balay i = j; 882bbb85fb3SSatish Balay } 883bbb85fb3SSatish Balay } 8848798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 885a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 886a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 887a2d1c673SSatish Balay restore the original flags */ 888a2d1c673SSatish Balay r1 = baij->roworiented; 889a2d1c673SSatish Balay r2 = a->roworiented; 89091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8917c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8927c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89391c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 894a2d1c673SSatish Balay while (1) { 8958798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 896a2d1c673SSatish Balay if (!flg) break; 897a2d1c673SSatish Balay 898a2d1c673SSatish Balay for (i=0; i<n;) { 899a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 900a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 901a2d1c673SSatish Balay if (j < n) ncols = j-i; 902a2d1c673SSatish Balay else ncols = n-i; 90397e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 904a2d1c673SSatish Balay i = j; 905a2d1c673SSatish Balay } 906a2d1c673SSatish Balay } 9078798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 908a2d1c673SSatish Balay baij->roworiented = r1; 909a2d1c673SSatish Balay a->roworiented = r2; 91091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 911bbb85fb3SSatish Balay } 912bbb85fb3SSatish Balay 913bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 914bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 915bbb85fb3SSatish Balay 916bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 917bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 918bbb85fb3SSatish Balay /* 919bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 920bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 921bbb85fb3SSatish Balay */ 922bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9237adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 924bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 925bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 926bbb85fb3SSatish Balay } 927bbb85fb3SSatish Balay } 928bbb85fb3SSatish Balay 929bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 930bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 931bbb85fb3SSatish Balay } 93291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 933bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 934bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 935bbb85fb3SSatish Balay 9366cf91177SBarry Smith #if defined(PETSC_USE_INFO) 937bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9381e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 939bbb85fb3SSatish Balay baij->ht_total_ct = 0; 940bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 941bbb85fb3SSatish Balay } 942bbb85fb3SSatish Balay #endif 943bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 944bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 945bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 946bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 947bbb85fb3SSatish Balay } 948bbb85fb3SSatish Balay 949*fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 950606d414cSSatish Balay baij->rowvalues = 0; 951bbb85fb3SSatish Balay PetscFunctionReturn(0); 952bbb85fb3SSatish Balay } 95357b952d6SSatish Balay 9544a2ae208SSatish Balay #undef __FUNCT__ 9554a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9566849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 95757b952d6SSatish Balay { 95857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 959dfbe8321SBarry Smith PetscErrorCode ierr; 960b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 961d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96232077d6dSBarry Smith PetscTruth iascii,isdraw; 963b0a32e0cSBarry Smith PetscViewer sviewer; 964f3ef73ceSBarry Smith PetscViewerFormat format; 96557b952d6SSatish Balay 966d64ed03dSBarry Smith PetscFunctionBegin; 96732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 968fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 96932077d6dSBarry Smith if (iascii) { 970b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 971456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9724e220ebcSLois Curfman McInnes MatInfo info; 9737adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 974d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 97577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 976d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 977d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 978d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 97977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 980d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 982b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98457b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9853a40ed3dSBarry Smith PetscFunctionReturn(0); 986fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 98777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9883a40ed3dSBarry Smith PetscFunctionReturn(0); 98904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99004929863SHong Zhang PetscFunctionReturn(0); 99157b952d6SSatish Balay } 99257b952d6SSatish Balay } 99357b952d6SSatish Balay 9940f5bd95cSBarry Smith if (isdraw) { 995b0a32e0cSBarry Smith PetscDraw draw; 99657b952d6SSatish Balay PetscTruth isnull; 997b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 998b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 99957b952d6SSatish Balay } 100057b952d6SSatish Balay 100157b952d6SSatish Balay if (size == 1) { 10027adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100357b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1004d64ed03dSBarry Smith } else { 100557b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 100657b952d6SSatish Balay Mat A; 100757b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1008d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10093eda8832SBarry Smith MatScalar *a; 101057b952d6SSatish Balay 1011f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1012f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10137adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101457b952d6SSatish Balay if (!rank) { 1015f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1016d64ed03dSBarry Smith } else { 1017f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 101857b952d6SSatish Balay } 1019f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1020d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102257b952d6SSatish Balay 102357b952d6SSatish Balay /* copy over the A part */ 102457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 102557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1026b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay for (i=0; i<mbs; i++) { 1029899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103057b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103157b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1032899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103357b952d6SSatish Balay for (k=0; k<bs; k++) { 103497e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1035cee3aa6bSSatish Balay col++; a += bs; 103657b952d6SSatish Balay } 103757b952d6SSatish Balay } 103857b952d6SSatish Balay } 103957b952d6SSatish Balay /* copy over the B part */ 104057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104257b952d6SSatish Balay for (i=0; i<mbs; i++) { 1043899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104457b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 104557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 104657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 104757b952d6SSatish Balay for (k=0; k<bs; k++) { 104897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1049cee3aa6bSSatish Balay col++; a += bs; 105057b952d6SSatish Balay } 105157b952d6SSatish Balay } 105257b952d6SSatish Balay } 1053606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10546d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10556d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 105655843e3eSBarry Smith /* 105755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1058b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 105955843e3eSBarry Smith */ 1060b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1061f14a1c24SBarry Smith if (!rank) { 10627adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10636831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106457b952d6SSatish Balay } 1065b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 106657b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 106757b952d6SSatish Balay } 10683a40ed3dSBarry Smith PetscFunctionReturn(0); 106957b952d6SSatish Balay } 107057b952d6SSatish Balay 10714a2ae208SSatish Balay #undef __FUNCT__ 10724a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1073dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107457b952d6SSatish Balay { 1075dfbe8321SBarry Smith PetscErrorCode ierr; 107632077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 107757b952d6SSatish Balay 1078d64ed03dSBarry Smith PetscFunctionBegin; 107932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1080fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1081b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1082fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108332077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10847b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10855cd90555SBarry Smith } else { 108679a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 108757b952d6SSatish Balay } 10883a40ed3dSBarry Smith PetscFunctionReturn(0); 108957b952d6SSatish Balay } 109057b952d6SSatish Balay 10914a2ae208SSatish Balay #undef __FUNCT__ 10924a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1093dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109479bdfe76SSatish Balay { 109579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1096dfbe8321SBarry Smith PetscErrorCode ierr; 109779bdfe76SSatish Balay 1098d64ed03dSBarry Smith PetscFunctionBegin; 1099aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1100d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110179bdfe76SSatish Balay #endif 11028798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11038798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110479bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 110579bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1106aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11079c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 110848e59246SSatish Balay #else 110905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111048e59246SSatish Balay #endif 111105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1112606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1113606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1114*fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 111505b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1116*fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1117899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1118606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1119901853e0SKris Buschelman 1120dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1121901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1122901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1123901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1124901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1125aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11283a40ed3dSBarry Smith PetscFunctionReturn(0); 112979bdfe76SSatish Balay } 113079bdfe76SSatish Balay 11314a2ae208SSatish Balay #undef __FUNCT__ 11324a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1133dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1134cee3aa6bSSatish Balay { 1135cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1136dfbe8321SBarry Smith PetscErrorCode ierr; 1137b24ad042SBarry Smith PetscInt nt; 1138cee3aa6bSSatish Balay 1139d64ed03dSBarry Smith PetscFunctionBegin; 1140e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1141d0f46423SBarry Smith if (nt != A->cmap->n) { 114229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114347b4a8eaSLois Curfman McInnes } 1144e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1145d0f46423SBarry Smith if (nt != A->rmap->n) { 114629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 114747b4a8eaSLois Curfman McInnes } 1148ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1149f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1150ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1151f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11523a40ed3dSBarry Smith PetscFunctionReturn(0); 1153cee3aa6bSSatish Balay } 1154cee3aa6bSSatish Balay 11554a2ae208SSatish Balay #undef __FUNCT__ 11564a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1158cee3aa6bSSatish Balay { 1159cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161d64ed03dSBarry Smith 1162d64ed03dSBarry Smith PetscFunctionBegin; 1163ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1164f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1165ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1166f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11673a40ed3dSBarry Smith PetscFunctionReturn(0); 1168cee3aa6bSSatish Balay } 1169cee3aa6bSSatish Balay 11704a2ae208SSatish Balay #undef __FUNCT__ 11714a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1172dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1173cee3aa6bSSatish Balay { 1174cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1175dfbe8321SBarry Smith PetscErrorCode ierr; 1176a5ff213dSBarry Smith PetscTruth merged; 1177cee3aa6bSSatish Balay 1178d64ed03dSBarry Smith PetscFunctionBegin; 1179a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1180cee3aa6bSSatish Balay /* do nondiagonal part */ 11817c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1182a5ff213dSBarry Smith if (!merged) { 1183cee3aa6bSSatish Balay /* send it on its way */ 1184ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do local part */ 11867c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1187cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1188a5ff213dSBarry Smith /* inserted in yy until the next line */ 1189ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190a5ff213dSBarry Smith } else { 1191a5ff213dSBarry Smith /* do local part */ 1192a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1193a5ff213dSBarry Smith /* send it on its way */ 1194ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1196ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1197a5ff213dSBarry Smith } 11983a40ed3dSBarry Smith PetscFunctionReturn(0); 1199cee3aa6bSSatish Balay } 1200cee3aa6bSSatish Balay 12014a2ae208SSatish Balay #undef __FUNCT__ 12024a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1203dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1204cee3aa6bSSatish Balay { 1205cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1206dfbe8321SBarry Smith PetscErrorCode ierr; 1207cee3aa6bSSatish Balay 1208d64ed03dSBarry Smith PetscFunctionBegin; 1209cee3aa6bSSatish Balay /* do nondiagonal part */ 12107c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1211cee3aa6bSSatish Balay /* send it on its way */ 1212ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1213cee3aa6bSSatish Balay /* do local part */ 12147c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1215cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1216cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1217cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1218ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12193a40ed3dSBarry Smith PetscFunctionReturn(0); 1220cee3aa6bSSatish Balay } 1221cee3aa6bSSatish Balay 1222cee3aa6bSSatish Balay /* 1223cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1224cee3aa6bSSatish Balay diagonal block 1225cee3aa6bSSatish Balay */ 12264a2ae208SSatish Balay #undef __FUNCT__ 12274a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1228dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1229cee3aa6bSSatish Balay { 1230cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1231dfbe8321SBarry Smith PetscErrorCode ierr; 1232d64ed03dSBarry Smith 1233d64ed03dSBarry Smith PetscFunctionBegin; 1234d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12353a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12363a40ed3dSBarry Smith PetscFunctionReturn(0); 1237cee3aa6bSSatish Balay } 1238cee3aa6bSSatish Balay 12394a2ae208SSatish Balay #undef __FUNCT__ 12404a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1241f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1242cee3aa6bSSatish Balay { 1243cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1244dfbe8321SBarry Smith PetscErrorCode ierr; 1245d64ed03dSBarry Smith 1246d64ed03dSBarry Smith PetscFunctionBegin; 1247f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1248f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12493a40ed3dSBarry Smith PetscFunctionReturn(0); 1250cee3aa6bSSatish Balay } 1251026e39d0SSatish Balay 12524a2ae208SSatish Balay #undef __FUNCT__ 12534a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1254b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1255acdf5bf4SSatish Balay { 1256acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 125787828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12586849ba73SBarry Smith PetscErrorCode ierr; 1259d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1260d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1261899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1262acdf5bf4SSatish Balay 1263d64ed03dSBarry Smith PetscFunctionBegin; 1264*fca92195SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1265abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1266acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1267acdf5bf4SSatish Balay 1268acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1269acdf5bf4SSatish Balay /* 1270acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1271acdf5bf4SSatish Balay */ 1272acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1273b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1274bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1275acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1276acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1277acdf5bf4SSatish Balay } 1278*fca92195SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1279acdf5bf4SSatish Balay } 1280d9d09a02SSatish Balay lrow = row - brstart; 1281acdf5bf4SSatish Balay 1282acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1283acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1284acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1285f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1286f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1287acdf5bf4SSatish Balay nztot = nzA + nzB; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay cmap = mat->garray; 1290acdf5bf4SSatish Balay if (v || idx) { 1291acdf5bf4SSatish Balay if (nztot) { 1292acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1293b24ad042SBarry Smith PetscInt imark = -1; 1294acdf5bf4SSatish Balay if (v) { 1295acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1296acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1297d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1298acdf5bf4SSatish Balay else break; 1299acdf5bf4SSatish Balay } 1300acdf5bf4SSatish Balay imark = i; 1301acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1302acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1303acdf5bf4SSatish Balay } 1304acdf5bf4SSatish Balay if (idx) { 1305acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1306acdf5bf4SSatish Balay if (imark > -1) { 1307acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1308bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1309acdf5bf4SSatish Balay } 1310acdf5bf4SSatish Balay } else { 1311acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1312d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1313d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1314acdf5bf4SSatish Balay else break; 1315acdf5bf4SSatish Balay } 1316acdf5bf4SSatish Balay imark = i; 1317acdf5bf4SSatish Balay } 1318d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1319d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1320acdf5bf4SSatish Balay } 1321d64ed03dSBarry Smith } else { 1322d212a18eSSatish Balay if (idx) *idx = 0; 1323d212a18eSSatish Balay if (v) *v = 0; 1324d212a18eSSatish Balay } 1325acdf5bf4SSatish Balay } 1326acdf5bf4SSatish Balay *nz = nztot; 1327f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1328f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13293a40ed3dSBarry Smith PetscFunctionReturn(0); 1330acdf5bf4SSatish Balay } 1331acdf5bf4SSatish Balay 13324a2ae208SSatish Balay #undef __FUNCT__ 13334a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1334b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1335acdf5bf4SSatish Balay { 1336acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1337d64ed03dSBarry Smith 1338d64ed03dSBarry Smith PetscFunctionBegin; 1339abc0a331SBarry Smith if (!baij->getrowactive) { 134029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1341acdf5bf4SSatish Balay } 1342acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13433a40ed3dSBarry Smith PetscFunctionReturn(0); 1344acdf5bf4SSatish Balay } 1345acdf5bf4SSatish Balay 13464a2ae208SSatish Balay #undef __FUNCT__ 13474a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1348dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 134958667388SSatish Balay { 135058667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1351dfbe8321SBarry Smith PetscErrorCode ierr; 1352d64ed03dSBarry Smith 1353d64ed03dSBarry Smith PetscFunctionBegin; 135458667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 135558667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13563a40ed3dSBarry Smith PetscFunctionReturn(0); 135758667388SSatish Balay } 13580ac07820SSatish Balay 13594a2ae208SSatish Balay #undef __FUNCT__ 13604a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1361dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13620ac07820SSatish Balay { 13634e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13644e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1365dfbe8321SBarry Smith PetscErrorCode ierr; 1366329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13670ac07820SSatish Balay 1368d64ed03dSBarry Smith PetscFunctionBegin; 1369d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13704e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13710e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1372de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13734e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13740e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1375de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13760ac07820SSatish Balay if (flag == MAT_LOCAL) { 13774e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13784e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13794e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13804e220ebcSLois Curfman McInnes info->memory = isend[3]; 13814e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13820ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13837adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13844e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13874e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1396d41123aaSBarry Smith } else { 139777431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 13980ac07820SSatish Balay } 13994e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14004e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14014e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14023a40ed3dSBarry Smith PetscFunctionReturn(0); 14030ac07820SSatish Balay } 14040ac07820SSatish Balay 14054a2ae208SSatish Balay #undef __FUNCT__ 14064a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14074e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 140858667388SSatish Balay { 140958667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1410dfbe8321SBarry Smith PetscErrorCode ierr; 141158667388SSatish Balay 1412d64ed03dSBarry Smith PetscFunctionBegin; 141312c028f9SKris Buschelman switch (op) { 1414512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 141512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 141628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1417a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 141812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14194e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14204e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142112c028f9SKris Buschelman break; 142212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14234e0d8c25SBarry Smith a->roworiented = flg; 14244e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14254e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142612c028f9SKris Buschelman break; 14274e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1428290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 142912c028f9SKris Buschelman break; 143012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14314e0d8c25SBarry Smith a->donotstash = flg; 143212c028f9SKris Buschelman break; 143312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14344e0d8c25SBarry Smith a->ht_flag = flg; 143512c028f9SKris Buschelman break; 143677e54ba9SKris Buschelman case MAT_SYMMETRIC: 143777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14382188ac68SBarry Smith case MAT_HERMITIAN: 14392188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14404e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144177e54ba9SKris Buschelman break; 144212c028f9SKris Buschelman default: 1443ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1444d64ed03dSBarry Smith } 14453a40ed3dSBarry Smith PetscFunctionReturn(0); 144658667388SSatish Balay } 144758667388SSatish Balay 14484a2ae208SSatish Balay #undef __FUNCT__ 14494a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1450fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14510ac07820SSatish Balay { 14520ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14530ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14540ac07820SSatish Balay Mat B; 1455dfbe8321SBarry Smith PetscErrorCode ierr; 1456d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1457d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14583eda8832SBarry Smith MatScalar *a; 14590ac07820SSatish Balay 1460d64ed03dSBarry Smith PetscFunctionBegin; 1461e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1462fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14637adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1464d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14657adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1466d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1467fc4dec0aSBarry Smith } else { 1468fc4dec0aSBarry Smith B = *matout; 1469fc4dec0aSBarry Smith } 14700ac07820SSatish Balay 14710ac07820SSatish Balay /* copy over the A part */ 14720ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14730ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1474b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14750ac07820SSatish Balay 14760ac07820SSatish Balay for (i=0; i<mbs; i++) { 1477899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14780ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14790ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1480899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14810ac07820SSatish Balay for (k=0; k<bs; k++) { 148297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14830ac07820SSatish Balay col++; a += bs; 14840ac07820SSatish Balay } 14850ac07820SSatish Balay } 14860ac07820SSatish Balay } 14870ac07820SSatish Balay /* copy over the B part */ 14880ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14890ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14900ac07820SSatish Balay for (i=0; i<mbs; i++) { 1491899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14920ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14930ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 14940ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 14950ac07820SSatish Balay for (k=0; k<bs; k++) { 149697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14970ac07820SSatish Balay col++; a += bs; 14980ac07820SSatish Balay } 14990ac07820SSatish Balay } 15000ac07820SSatish Balay } 1501606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15020ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15030ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15040ac07820SSatish Balay 1505815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15060ac07820SSatish Balay *matout = B; 15070ac07820SSatish Balay } else { 1508273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15090ac07820SSatish Balay } 15103a40ed3dSBarry Smith PetscFunctionReturn(0); 15110ac07820SSatish Balay } 15120e95ebc0SSatish Balay 15134a2ae208SSatish Balay #undef __FUNCT__ 15144a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1515dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15160e95ebc0SSatish Balay { 151736c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 151836c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1519dfbe8321SBarry Smith PetscErrorCode ierr; 1520b24ad042SBarry Smith PetscInt s1,s2,s3; 15210e95ebc0SSatish Balay 1522d64ed03dSBarry Smith PetscFunctionBegin; 152336c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 152436c4a09eSSatish Balay if (rr) { 152536c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 152629bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 152736c4a09eSSatish Balay /* Overlap communication with computation. */ 1528ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 152936c4a09eSSatish Balay } 15300e95ebc0SSatish Balay if (ll) { 15310e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153229bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1533a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15340e95ebc0SSatish Balay } 153536c4a09eSSatish Balay /* scale the diagonal block */ 153636c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 153736c4a09eSSatish Balay 153836c4a09eSSatish Balay if (rr) { 153936c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1540ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1541a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154236c4a09eSSatish Balay } 154336c4a09eSSatish Balay 15443a40ed3dSBarry Smith PetscFunctionReturn(0); 15450e95ebc0SSatish Balay } 15460e95ebc0SSatish Balay 15474a2ae208SSatish Balay #undef __FUNCT__ 15484a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1549f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15500ac07820SSatish Balay { 15510ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15526849ba73SBarry Smith PetscErrorCode ierr; 1553b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1554d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1555b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1556b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15577adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1558d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15597adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15600ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15610ac07820SSatish Balay MPI_Status recv_status,*send_status; 15626543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15636543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15646543fbbaSBarry Smith #endif 15650ac07820SSatish Balay 1566d64ed03dSBarry Smith PetscFunctionBegin; 15670ac07820SSatish Balay /* first count number of contributors to each processor */ 1568b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1569b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1570b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15716543fbbaSBarry Smith j = 0; 15720ac07820SSatish Balay for (i=0; i<N; i++) { 15736543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15746543fbbaSBarry Smith lastidx = idx; 15756543fbbaSBarry Smith for (; j<size; j++) { 1576357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15776543fbbaSBarry Smith nprocs[2*j]++; 15786543fbbaSBarry Smith nprocs[2*j+1] = 1; 15796543fbbaSBarry Smith owner[i] = j; 15806543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15816543fbbaSBarry Smith found = PETSC_TRUE; 15826543fbbaSBarry Smith #endif 15836543fbbaSBarry Smith break; 15840ac07820SSatish Balay } 15850ac07820SSatish Balay } 15866543fbbaSBarry Smith #if defined(PETSC_DEBUG) 158729bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15886543fbbaSBarry Smith found = PETSC_FALSE; 15896543fbbaSBarry Smith #endif 15900ac07820SSatish Balay } 1591c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15920ac07820SSatish Balay 15930ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1594c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 15950ac07820SSatish Balay 15960ac07820SSatish Balay /* post receives: */ 1597b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1598b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 15990ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1600b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16010ac07820SSatish Balay } 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* do sends: 16040ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16050ac07820SSatish Balay the ith processor 16060ac07820SSatish Balay */ 1607b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1608b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1609b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16100ac07820SSatish Balay starts[0] = 0; 1611c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16120ac07820SSatish Balay for (i=0; i<N; i++) { 16130ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16140ac07820SSatish Balay } 16150ac07820SSatish Balay 16160ac07820SSatish Balay starts[0] = 0; 1617c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16180ac07820SSatish Balay count = 0; 16190ac07820SSatish Balay for (i=0; i<size; i++) { 1620c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1621b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16220ac07820SSatish Balay } 16230ac07820SSatish Balay } 1624606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16250ac07820SSatish Balay 1626357c27ecSBarry Smith base = owners[rank]; 16270ac07820SSatish Balay 16280ac07820SSatish Balay /* wait on receives */ 1629*fca92195SBarry Smith ierr = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr); 1630*fca92195SBarry Smith count = nrecvs; 1631*fca92195SBarry Smith slen = 0; 16320ac07820SSatish Balay while (count) { 1633ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16340ac07820SSatish Balay /* unpack receives into our local space */ 1635b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16360ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16370ac07820SSatish Balay lens[imdex] = n; 16380ac07820SSatish Balay slen += n; 16390ac07820SSatish Balay count--; 16400ac07820SSatish Balay } 1641606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16420ac07820SSatish Balay 16430ac07820SSatish Balay /* move the data into the send scatter */ 1644b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16450ac07820SSatish Balay count = 0; 16460ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16470ac07820SSatish Balay values = rvalues + i*nmax; 16480ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16490ac07820SSatish Balay lrows[count++] = values[j] - base; 16500ac07820SSatish Balay } 16510ac07820SSatish Balay } 1652606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1653*fca92195SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 1654606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1655606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16560ac07820SSatish Balay 16570ac07820SSatish Balay /* actually zap the local rows */ 165872dacd9aSBarry Smith /* 165972dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1660a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166172dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166272dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 166372dacd9aSBarry Smith 166472dacd9aSBarry Smith */ 16659c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1666f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1667d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1668f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1669f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1670f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1671fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 167229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1673512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16746525c446SSatish Balay } 1675a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1676a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1677f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1678a07cd24cSSatish Balay } 1679a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1680a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16819c957beeSSatish Balay } else { 1682f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1683a07cd24cSSatish Balay } 16849c957beeSSatish Balay 1685606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1686a07cd24cSSatish Balay 16870ac07820SSatish Balay /* wait on sends */ 16880ac07820SSatish Balay if (nsends) { 168982502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1690ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1691606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16920ac07820SSatish Balay } 1693606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1694606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 16950ac07820SSatish Balay 16963a40ed3dSBarry Smith PetscFunctionReturn(0); 16970ac07820SSatish Balay } 169872dacd9aSBarry Smith 16994a2ae208SSatish Balay #undef __FUNCT__ 17004a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1701dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1702bb5a7306SBarry Smith { 1703bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1704dfbe8321SBarry Smith PetscErrorCode ierr; 1705d64ed03dSBarry Smith 1706d64ed03dSBarry Smith PetscFunctionBegin; 1707bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17083a40ed3dSBarry Smith PetscFunctionReturn(0); 1709bb5a7306SBarry Smith } 1710bb5a7306SBarry Smith 17116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17120ac07820SSatish Balay 17134a2ae208SSatish Balay #undef __FUNCT__ 17144a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1715dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17167fc3c18eSBarry Smith { 17177fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17187fc3c18eSBarry Smith Mat a,b,c,d; 17197fc3c18eSBarry Smith PetscTruth flg; 1720dfbe8321SBarry Smith PetscErrorCode ierr; 17217fc3c18eSBarry Smith 17227fc3c18eSBarry Smith PetscFunctionBegin; 17237fc3c18eSBarry Smith a = matA->A; b = matA->B; 17247fc3c18eSBarry Smith c = matB->A; d = matB->B; 17257fc3c18eSBarry Smith 17267fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1727abc0a331SBarry Smith if (flg) { 17287fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17297fc3c18eSBarry Smith } 17307adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17317fc3c18eSBarry Smith PetscFunctionReturn(0); 17327fc3c18eSBarry Smith } 17337fc3c18eSBarry Smith 17343c896bc6SHong Zhang #undef __FUNCT__ 17353c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17363c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17373c896bc6SHong Zhang { 17383c896bc6SHong Zhang PetscErrorCode ierr; 17393c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17403c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17413c896bc6SHong Zhang 17423c896bc6SHong Zhang PetscFunctionBegin; 17433c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17443c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17453c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17463c896bc6SHong Zhang } else { 17473c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17483c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17493c896bc6SHong Zhang } 17503c896bc6SHong Zhang PetscFunctionReturn(0); 17513c896bc6SHong Zhang } 1752273d9f13SBarry Smith 17534a2ae208SSatish Balay #undef __FUNCT__ 17544a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1755dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1756273d9f13SBarry Smith { 1757dfbe8321SBarry Smith PetscErrorCode ierr; 1758273d9f13SBarry Smith 1759273d9f13SBarry Smith PetscFunctionBegin; 1760db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1761273d9f13SBarry Smith PetscFunctionReturn(0); 1762273d9f13SBarry Smith } 1763273d9f13SBarry Smith 17644fe895cdSHong Zhang #include "petscblaslapack.h" 17654fe895cdSHong Zhang #undef __FUNCT__ 17664fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17674fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17684fe895cdSHong Zhang { 17694fe895cdSHong Zhang PetscErrorCode ierr; 17704fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17714fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17724fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17734fe895cdSHong Zhang 17744fe895cdSHong Zhang PetscFunctionBegin; 17754fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17764fe895cdSHong Zhang PetscScalar alpha = a; 17774fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17784fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17790805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17804fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17814fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17824fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17830805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17844fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17854fe895cdSHong Zhang } else { 17864fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17874fe895cdSHong Zhang } 17884fe895cdSHong Zhang PetscFunctionReturn(0); 17894fe895cdSHong Zhang } 17904fe895cdSHong Zhang 179199cafbc1SBarry Smith #undef __FUNCT__ 179241c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 179341c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 179441c166b1SJed Brown { 179541c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1796829b6ff0SJed Brown PetscInt rbs,cbs; 179741c166b1SJed Brown PetscErrorCode ierr; 179841c166b1SJed Brown 179941c166b1SJed Brown PetscFunctionBegin; 180041c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 180141c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 1802829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 1803829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1804829b6ff0SJed Brown if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs); 1805829b6ff0SJed Brown if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs); 180641c166b1SJed Brown PetscFunctionReturn(0); 180741c166b1SJed Brown } 180841c166b1SJed Brown 180941c166b1SJed Brown #undef __FUNCT__ 181099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 181199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 181299cafbc1SBarry Smith { 181399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181499cafbc1SBarry Smith PetscErrorCode ierr; 181599cafbc1SBarry Smith 181699cafbc1SBarry Smith PetscFunctionBegin; 181799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 181899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 181999cafbc1SBarry Smith PetscFunctionReturn(0); 182099cafbc1SBarry Smith } 182199cafbc1SBarry Smith 182299cafbc1SBarry Smith #undef __FUNCT__ 182399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 182499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 182599cafbc1SBarry Smith { 182699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 182799cafbc1SBarry Smith PetscErrorCode ierr; 182899cafbc1SBarry Smith 182999cafbc1SBarry Smith PetscFunctionBegin; 183099cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 183199cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 183299cafbc1SBarry Smith PetscFunctionReturn(0); 183399cafbc1SBarry Smith } 183499cafbc1SBarry Smith 183582094794SBarry Smith #undef __FUNCT__ 183682094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18374aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18384aa3045dSJed Brown { 18394aa3045dSJed Brown PetscErrorCode ierr; 18404aa3045dSJed Brown IS iscol_local; 18414aa3045dSJed Brown PetscInt csize; 18424aa3045dSJed Brown 18434aa3045dSJed Brown PetscFunctionBegin; 18444aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1845b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1846b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1847b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1848b79d0421SJed Brown } else { 18494aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1850b79d0421SJed Brown } 18514aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1852b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1853b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18544aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1855b79d0421SJed Brown } 18564aa3045dSJed Brown PetscFunctionReturn(0); 18574aa3045dSJed Brown } 18584aa3045dSJed Brown 18594aa3045dSJed Brown #undef __FUNCT__ 18604aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 186182094794SBarry Smith /* 186282094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 186382094794SBarry Smith in local and then by concatenating the local matrices the end result. 186482094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 186582094794SBarry Smith */ 18664aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 186782094794SBarry Smith { 186882094794SBarry Smith PetscErrorCode ierr; 186982094794SBarry Smith PetscMPIInt rank,size; 187082094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 187182094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 187282094794SBarry Smith Mat *local,M,Mreuse; 187382094794SBarry Smith MatScalar *vwork,*aa; 187482094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 187582094794SBarry Smith Mat_SeqBAIJ *aij; 187682094794SBarry Smith 187782094794SBarry Smith 187882094794SBarry Smith PetscFunctionBegin; 187982094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 188082094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188182094794SBarry Smith 188282094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 188382094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 188482094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 188582094794SBarry Smith local = &Mreuse; 188682094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 188782094794SBarry Smith } else { 188882094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 188982094794SBarry Smith Mreuse = *local; 189082094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 189182094794SBarry Smith } 189282094794SBarry Smith 189382094794SBarry Smith /* 189482094794SBarry Smith m - number of local rows 189582094794SBarry Smith n - number of columns (same on all processors) 189682094794SBarry Smith rstart - first row in new global matrix generated 189782094794SBarry Smith */ 189882094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 189982094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 190082094794SBarry Smith m = m/bs; 190182094794SBarry Smith n = n/bs; 190282094794SBarry Smith 190382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 190482094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 190582094794SBarry Smith ii = aij->i; 190682094794SBarry Smith jj = aij->j; 190782094794SBarry Smith 190882094794SBarry Smith /* 190982094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 191082094794SBarry Smith portions of the matrix in order to do correct preallocation 191182094794SBarry Smith */ 191282094794SBarry Smith 191382094794SBarry Smith /* first get start and end of "diagonal" columns */ 191482094794SBarry Smith if (csize == PETSC_DECIDE) { 191582094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 191682094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 191782094794SBarry Smith nlocal = m; 191882094794SBarry Smith } else { 191982094794SBarry Smith nlocal = n/size + ((n % size) > rank); 192082094794SBarry Smith } 192182094794SBarry Smith } else { 192282094794SBarry Smith nlocal = csize/bs; 192382094794SBarry Smith } 192482094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 192582094794SBarry Smith rstart = rend - nlocal; 192682094794SBarry Smith if (rank == size - 1 && rend != n) { 192782094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 192882094794SBarry Smith } 192982094794SBarry Smith 193082094794SBarry Smith /* next, compute all the lengths */ 193182094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 193282094794SBarry Smith olens = dlens + m; 193382094794SBarry Smith for (i=0; i<m; i++) { 193482094794SBarry Smith jend = ii[i+1] - ii[i]; 193582094794SBarry Smith olen = 0; 193682094794SBarry Smith dlen = 0; 193782094794SBarry Smith for (j=0; j<jend; j++) { 193882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 193982094794SBarry Smith else dlen++; 194082094794SBarry Smith jj++; 194182094794SBarry Smith } 194282094794SBarry Smith olens[i] = olen; 194382094794SBarry Smith dlens[i] = dlen; 194482094794SBarry Smith } 194582094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 194682094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 194782094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 194882094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 194982094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 195082094794SBarry Smith } else { 195182094794SBarry Smith PetscInt ml,nl; 195282094794SBarry Smith 195382094794SBarry Smith M = *newmat; 195482094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 195582094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 195682094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 195782094794SBarry Smith /* 195882094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 195982094794SBarry Smith rather than the slower MatSetValues(). 196082094794SBarry Smith */ 196182094794SBarry Smith M->was_assembled = PETSC_TRUE; 196282094794SBarry Smith M->assembled = PETSC_FALSE; 196382094794SBarry Smith } 196482094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 196582094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 196682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 196782094794SBarry Smith ii = aij->i; 196882094794SBarry Smith jj = aij->j; 196982094794SBarry Smith aa = aij->a; 197082094794SBarry Smith for (i=0; i<m; i++) { 197182094794SBarry Smith row = rstart/bs + i; 197282094794SBarry Smith nz = ii[i+1] - ii[i]; 197382094794SBarry Smith cwork = jj; jj += nz; 197482094794SBarry Smith vwork = aa; aa += nz; 197582094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 197682094794SBarry Smith } 197782094794SBarry Smith 197882094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 197982094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 198082094794SBarry Smith *newmat = M; 198182094794SBarry Smith 198282094794SBarry Smith /* save submatrix used in processor for next request */ 198382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 198482094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 198582094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 198682094794SBarry Smith } 198782094794SBarry Smith 198882094794SBarry Smith PetscFunctionReturn(0); 198982094794SBarry Smith } 199082094794SBarry Smith 199182094794SBarry Smith #undef __FUNCT__ 199282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 199382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 199482094794SBarry Smith { 199582094794SBarry Smith MPI_Comm comm,pcomm; 199682094794SBarry Smith PetscInt first,local_size,nrows; 199782094794SBarry Smith const PetscInt *rows; 1998dbf0e21dSBarry Smith PetscMPIInt size; 199982094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 200082094794SBarry Smith PetscErrorCode ierr; 200182094794SBarry Smith 200282094794SBarry Smith PetscFunctionBegin; 200382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 200482094794SBarry Smith /* make a collective version of 'rowp' */ 200582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 200682094794SBarry Smith if (pcomm==comm) { 200782094794SBarry Smith crowp = rowp; 200882094794SBarry Smith } else { 200982094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 201082094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 201182094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 201282094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 201382094794SBarry Smith } 201482094794SBarry Smith /* collect the global row permutation and invert it */ 201582094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 201682094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 201782094794SBarry Smith if (pcomm!=comm) { 201882094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 201982094794SBarry Smith } 202082094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 202182094794SBarry Smith /* get the local target indices */ 202282094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 202382094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 202482094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 202582094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 202782094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 202882094794SBarry Smith /* the column permutation is so much easier; 202982094794SBarry Smith make a local version of 'colp' and invert it */ 203082094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2031dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2032dbf0e21dSBarry Smith if (size==1) { 203382094794SBarry Smith lcolp = colp; 203482094794SBarry Smith } else { 203582094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 203682094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 203782094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 203882094794SBarry Smith } 2039dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 204082094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20414aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2042dbf0e21dSBarry Smith if (size>1) { 204382094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 204482094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 204582094794SBarry Smith } 204682094794SBarry Smith /* now we just get the submatrix */ 20474aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 204882094794SBarry Smith /* clean up */ 204982094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 205082094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 205182094794SBarry Smith PetscFunctionReturn(0); 205282094794SBarry Smith } 205382094794SBarry Smith 20548c7482ecSBarry Smith #undef __FUNCT__ 20558c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20568c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20578c7482ecSBarry Smith { 20588c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20598c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20608c7482ecSBarry Smith 20618c7482ecSBarry Smith PetscFunctionBegin; 20628c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20638c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20648c7482ecSBarry Smith PetscFunctionReturn(0); 20658c7482ecSBarry Smith } 20668c7482ecSBarry Smith 2067f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2068f6d58c54SBarry Smith 2069f6d58c54SBarry Smith #undef __FUNCT__ 2070f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2071f6d58c54SBarry Smith /* 2072f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2073f6d58c54SBarry Smith */ 2074f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2075f6d58c54SBarry Smith { 2076f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2077f6d58c54SBarry Smith PetscErrorCode ierr; 2078f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2079f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2080f6d58c54SBarry Smith const PetscInt *is; 2081f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2082f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2083f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2084f6d58c54SBarry Smith IS *isa; 2085f6d58c54SBarry Smith PetscTruth done,flg; 2086f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2087f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2088f6d58c54SBarry Smith 2089f6d58c54SBarry Smith PetscFunctionBegin; 2090f6d58c54SBarry Smith if (!mat->assembled) { 2091f6d58c54SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2092f6d58c54SBarry Smith } 2093f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2094f6d58c54SBarry Smith 2095f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2096f6d58c54SBarry Smith 2097f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2098f6d58c54SBarry Smith M = mat->rmap->n/bs; 2099f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2100f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2101f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2102f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2103f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2104f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2105f6d58c54SBarry Smith 2106f6d58c54SBarry Smith c->ncolors = nis; 2107f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2108f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2109f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2110f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2111f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2112f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2113f6d58c54SBarry Smith 2114f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2115f6d58c54SBarry Smith if (!baij->colmap) { 2116f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2117f6d58c54SBarry Smith } 2118f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2119f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2120f6d58c54SBarry Smith 2121f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2122f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2123f6d58c54SBarry Smith 2124f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2125f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2126f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2127f6d58c54SBarry Smith c->ncolumns[i] = n; 2128f6d58c54SBarry Smith if (n) { 2129f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2130f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2131f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2132f6d58c54SBarry Smith } else { 2133f6d58c54SBarry Smith c->columns[i] = 0; 2134f6d58c54SBarry Smith } 2135f6d58c54SBarry Smith 2136f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2137f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2138f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2139*fca92195SBarry Smith ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr); 2140f6d58c54SBarry Smith 2141f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2142f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2143f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2144f6d58c54SBarry Smith if (!nctot) { 2145f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2146f6d58c54SBarry Smith } 2147f6d58c54SBarry Smith 2148f6d58c54SBarry Smith disp[0] = 0; 2149f6d58c54SBarry Smith for (j=1; j<size; j++) { 2150f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2151f6d58c54SBarry Smith } 2152f6d58c54SBarry Smith 2153f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2154f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2155f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2156*fca92195SBarry Smith ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr); 2157f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2158f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2159f6d58c54SBarry Smith nctot = n; 2160f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2161f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2162f6d58c54SBarry Smith } else { 2163f6d58c54SBarry Smith SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2164f6d58c54SBarry Smith } 2165f6d58c54SBarry Smith 2166f6d58c54SBarry Smith /* 2167f6d58c54SBarry Smith Mark all rows affect by these columns 2168f6d58c54SBarry Smith */ 2169f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2170f6d58c54SBarry Smith flg = PETSC_FALSE; 2171f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2172f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2173f6d58c54SBarry Smith /* crude, fast version */ 2174f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2175f6d58c54SBarry Smith /* loop over columns*/ 2176f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2177f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2178f6d58c54SBarry Smith col = ltog[cols[j]]; 2179f6d58c54SBarry Smith } else { 2180f6d58c54SBarry Smith col = cols[j]; 2181f6d58c54SBarry Smith } 2182f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2183f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2184f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2185f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2186f6d58c54SBarry Smith } else { 2187f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2188f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr) 2189f6d58c54SBarry Smith colb --; 2190f6d58c54SBarry Smith #else 2191f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2192f6d58c54SBarry Smith #endif 2193f6d58c54SBarry Smith if (colb == -1) { 2194f6d58c54SBarry Smith m = 0; 2195f6d58c54SBarry Smith } else { 2196f6d58c54SBarry Smith colb = colb/bs; 2197f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2198f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2199f6d58c54SBarry Smith } 2200f6d58c54SBarry Smith } 2201f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2202f6d58c54SBarry Smith for (k=0; k<m; k++) { 2203f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2204f6d58c54SBarry Smith } 2205f6d58c54SBarry Smith } 2206f6d58c54SBarry Smith 2207f6d58c54SBarry Smith /* count the number of hits */ 2208f6d58c54SBarry Smith nrows = 0; 2209f6d58c54SBarry Smith for (j=0; j<M; j++) { 2210f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2211f6d58c54SBarry Smith } 2212f6d58c54SBarry Smith c->nrows[i] = nrows; 2213f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2214f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2215f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2216f6d58c54SBarry Smith nrows = 0; 2217f6d58c54SBarry Smith for (j=0; j<M; j++) { 2218f6d58c54SBarry Smith if (rowhit[j]) { 2219f6d58c54SBarry Smith c->rows[i][nrows] = j; 2220f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2221f6d58c54SBarry Smith nrows++; 2222f6d58c54SBarry Smith } 2223f6d58c54SBarry Smith } 2224f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2225f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2226f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2227f6d58c54SBarry Smith rowhit[M] = M; 2228f6d58c54SBarry Smith nrows = 0; 2229f6d58c54SBarry Smith /* loop over columns*/ 2230f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2231f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2232f6d58c54SBarry Smith col = ltog[cols[j]]; 2233f6d58c54SBarry Smith } else { 2234f6d58c54SBarry Smith col = cols[j]; 2235f6d58c54SBarry Smith } 2236f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2237f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2238f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2239f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2240f6d58c54SBarry Smith } else { 2241f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2242f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2243f6d58c54SBarry Smith colb --; 2244f6d58c54SBarry Smith #else 2245f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2246f6d58c54SBarry Smith #endif 2247f6d58c54SBarry Smith if (colb == -1) { 2248f6d58c54SBarry Smith m = 0; 2249f6d58c54SBarry Smith } else { 2250f6d58c54SBarry Smith colb = colb/bs; 2251f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2252f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2253f6d58c54SBarry Smith } 2254f6d58c54SBarry Smith } 2255f6d58c54SBarry Smith 2256f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2257f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2258f6d58c54SBarry Smith for (k=0; k<m; k++) { 2259f6d58c54SBarry Smith currentcol = *rows++; 2260f6d58c54SBarry Smith /* is it already in the list? */ 2261f6d58c54SBarry Smith do { 2262f6d58c54SBarry Smith mfm = fm; 2263f6d58c54SBarry Smith fm = rowhit[fm]; 2264f6d58c54SBarry Smith } while (fm < currentcol); 2265f6d58c54SBarry Smith /* not in list so add it */ 2266f6d58c54SBarry Smith if (fm != currentcol) { 2267f6d58c54SBarry Smith nrows++; 2268f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2269f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2270f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2271f6d58c54SBarry Smith rowhit[currentcol] = fm; 2272f6d58c54SBarry Smith fm = currentcol; 2273f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2274f6d58c54SBarry Smith } else { 2275f6d58c54SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2276f6d58c54SBarry Smith } 2277f6d58c54SBarry Smith } 2278f6d58c54SBarry Smith } 2279f6d58c54SBarry Smith c->nrows[i] = nrows; 2280f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2281f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2282f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2283f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2284f6d58c54SBarry Smith nrows = 0; 2285f6d58c54SBarry Smith fm = rowhit[M]; 2286f6d58c54SBarry Smith do { 2287f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2288f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2289f6d58c54SBarry Smith fm = rowhit[fm]; 2290f6d58c54SBarry Smith } while (fm < M); 2291f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2292f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2293f6d58c54SBarry Smith } 2294f6d58c54SBarry Smith 2295f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2296f6d58c54SBarry Smith /* 2297f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2298f6d58c54SBarry Smith */ 2299f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2300f6d58c54SBarry Smith PetscInt *garray; 2301f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2302f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2303f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2304f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2305f6d58c54SBarry Smith } 2306f6d58c54SBarry Smith } 2307f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2308f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2309f6d58c54SBarry Smith CHKMEMQ; 2310f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2311f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2312f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2313f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2314f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2315f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2316f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2317f6d58c54SBarry Smith colb = col - cstart; 2318f6d58c54SBarry Smith } else { 2319f6d58c54SBarry Smith /* column is in "off-processor" part */ 2320f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2321f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2322f6d58c54SBarry Smith colb --; 2323f6d58c54SBarry Smith #else 2324f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2325f6d58c54SBarry Smith #endif 2326f6d58c54SBarry Smith colb = colb/bs; 2327f6d58c54SBarry Smith colb += cend - cstart; 2328f6d58c54SBarry Smith } 2329f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2330f6d58c54SBarry Smith } 2331f6d58c54SBarry Smith } 2332f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2333f6d58c54SBarry Smith /* Get gtol mapping */ 2334f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2335f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2336f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2337f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2338f6d58c54SBarry Smith 2339f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2340f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2341f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2342f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2343f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2344f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2345f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2346f6d58c54SBarry Smith } 2347f6d58c54SBarry Smith } 2348f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2349f6d58c54SBarry Smith } 2350f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2351f6d58c54SBarry Smith 2352f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2353f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2354f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2355f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2356f6d58c54SBarry Smith CHKMEMQ; 2357f6d58c54SBarry Smith PetscFunctionReturn(0); 2358f6d58c54SBarry Smith } 2359f6d58c54SBarry Smith 2360f6d58c54SBarry Smith #undef __FUNCT__ 2361f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2362f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2363f6d58c54SBarry Smith { 2364f6d58c54SBarry Smith Mat B; 2365f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2366f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2367f6d58c54SBarry Smith Mat_SeqAIJ *b; 2368f6d58c54SBarry Smith PetscErrorCode ierr; 2369f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2370f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2371f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2372f6d58c54SBarry Smith 2373f6d58c54SBarry Smith PetscFunctionBegin; 2374f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2375f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2376f6d58c54SBarry Smith 2377f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2378f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2379f6d58c54SBarry Smith */ 2380f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2381f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2382f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2383f6d58c54SBarry Smith } 2384f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2385f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2386f6d58c54SBarry Smith displs = recvcounts + size; 2387f6d58c54SBarry Smith for (i=0; i<size; i++) { 2388f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2389f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2390f6d58c54SBarry Smith } 2391f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2392f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2393f6d58c54SBarry Smith #else 2394f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2395f6d58c54SBarry Smith #endif 2396f6d58c54SBarry Smith /* --------------------------------------------------------------- 2397f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2398f6d58c54SBarry Smith */ 2399f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2400f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2401f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2402f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2403f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2404f6d58c54SBarry Smith 2405f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2406f6d58c54SBarry Smith Copy my part of matrix column indices over 2407f6d58c54SBarry Smith */ 2408f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2409f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2410f6d58c54SBarry Smith a_jsendbuf = ad->j; 2411f6d58c54SBarry Smith b_jsendbuf = bd->j; 2412f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2413f6d58c54SBarry Smith cnt = 0; 2414f6d58c54SBarry Smith for (i=0; i<n; i++) { 2415f6d58c54SBarry Smith 2416f6d58c54SBarry Smith /* put in lower diagonal portion */ 2417f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2418f6d58c54SBarry Smith while (m > 0) { 2419f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2420f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2421f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2422f6d58c54SBarry Smith m--; 2423f6d58c54SBarry Smith } 2424f6d58c54SBarry Smith 2425f6d58c54SBarry Smith /* put in diagonal portion */ 2426f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2427f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2428f6d58c54SBarry Smith } 2429f6d58c54SBarry Smith 2430f6d58c54SBarry Smith /* put in upper diagonal portion */ 2431f6d58c54SBarry Smith while (m-- > 0) { 2432f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2433f6d58c54SBarry Smith } 2434f6d58c54SBarry Smith } 2435f6d58c54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2436f6d58c54SBarry Smith 2437f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2438f6d58c54SBarry Smith Gather all column indices to all processors 2439f6d58c54SBarry Smith */ 2440f6d58c54SBarry Smith for (i=0; i<size; i++) { 2441f6d58c54SBarry Smith recvcounts[i] = 0; 2442f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2443f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2444f6d58c54SBarry Smith } 2445f6d58c54SBarry Smith } 2446f6d58c54SBarry Smith displs[0] = 0; 2447f6d58c54SBarry Smith for (i=1; i<size; i++) { 2448f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2449f6d58c54SBarry Smith } 2450f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2451f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2452f6d58c54SBarry Smith #else 2453f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2454f6d58c54SBarry Smith #endif 2455f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2456f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2457f6d58c54SBarry Smith */ 2458f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2459f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2460f6d58c54SBarry Smith /* set the b->i indices */ 2461f6d58c54SBarry Smith b->i[0] = 0; 2462f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2463f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2464f6d58c54SBarry Smith } 2465f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2466f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2467f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2468f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2469f6d58c54SBarry Smith 2470f6d58c54SBarry Smith if (A->symmetric){ 2471f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2472f6d58c54SBarry Smith } else if (A->hermitian) { 2473f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2474f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2475f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2476f6d58c54SBarry Smith } 2477f6d58c54SBarry Smith *newmat = B; 2478f6d58c54SBarry Smith PetscFunctionReturn(0); 2479f6d58c54SBarry Smith } 2480f6d58c54SBarry Smith 2481b1a666ecSBarry Smith #undef __FUNCT__ 2482b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2483b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2484b1a666ecSBarry Smith { 2485b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2486b1a666ecSBarry Smith PetscErrorCode ierr; 2487b1a666ecSBarry Smith Vec bb1 = 0; 2488b1a666ecSBarry Smith 2489b1a666ecSBarry Smith PetscFunctionBegin; 2490b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2491b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2492b1a666ecSBarry Smith } 2493b1a666ecSBarry Smith 2494b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2495b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2496b1a666ecSBarry Smith PetscFunctionReturn(0); 2497b1a666ecSBarry Smith } 2498b1a666ecSBarry Smith 2499b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2500b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2501b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2502b1a666ecSBarry Smith its--; 2503b1a666ecSBarry Smith } 2504b1a666ecSBarry Smith 2505b1a666ecSBarry Smith while (its--) { 2506b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2507b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2508b1a666ecSBarry Smith 2509b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2510b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2511b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2512b1a666ecSBarry Smith 2513b1a666ecSBarry Smith /* local sweep */ 2514b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2515b1a666ecSBarry Smith } 2516b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2517b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2518b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2519b1a666ecSBarry Smith its--; 2520b1a666ecSBarry Smith } 2521b1a666ecSBarry Smith while (its--) { 2522b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2523b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2524b1a666ecSBarry Smith 2525b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2526b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2527b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2528b1a666ecSBarry Smith 2529b1a666ecSBarry Smith /* local sweep */ 2530b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2531b1a666ecSBarry Smith } 2532b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2533b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2534b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2535b1a666ecSBarry Smith its--; 2536b1a666ecSBarry Smith } 2537b1a666ecSBarry Smith while (its--) { 2538b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2539b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2540b1a666ecSBarry Smith 2541b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2542b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2543b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2544b1a666ecSBarry Smith 2545b1a666ecSBarry Smith /* local sweep */ 2546b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2547b1a666ecSBarry Smith } 2548b1a666ecSBarry Smith } else { 2549b1a666ecSBarry Smith SETERRQ(PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2550b1a666ecSBarry Smith } 2551b1a666ecSBarry Smith 2552b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2553b1a666ecSBarry Smith PetscFunctionReturn(0); 2554b1a666ecSBarry Smith } 2555b1a666ecSBarry Smith 2556f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2557f6d58c54SBarry Smith 25588c7482ecSBarry Smith 255979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2560cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2561cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2562cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2563cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2564cc2dc46cSBarry Smith MatMult_MPIBAIJ, 256597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25667c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25677c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2568cc2dc46cSBarry Smith 0, 2569cc2dc46cSBarry Smith 0, 2570cc2dc46cSBarry Smith 0, 257197304618SKris Buschelman /*10*/ 0, 2572cc2dc46cSBarry Smith 0, 2573cc2dc46cSBarry Smith 0, 2574b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2575cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 257697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25777fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2578cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2579cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2580cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 258197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2582cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2583cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2584cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2585d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2586cc2dc46cSBarry Smith 0, 2587cc2dc46cSBarry Smith 0, 2588cc2dc46cSBarry Smith 0, 2589cc2dc46cSBarry Smith 0, 2590d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2591273d9f13SBarry Smith 0, 2592cc2dc46cSBarry Smith 0, 2593cc2dc46cSBarry Smith 0, 2594cc2dc46cSBarry Smith 0, 2595d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2596cc2dc46cSBarry Smith 0, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith 0, 2599cc2dc46cSBarry Smith 0, 2600d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2601cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2602cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2603cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 26043c896bc6SHong Zhang MatCopy_MPIBAIJ, 2605d519adbfSMatthew Knepley /*44*/ 0, 2606cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2607cc2dc46cSBarry Smith 0, 2608cc2dc46cSBarry Smith 0, 2609cc2dc46cSBarry Smith 0, 261041c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2611cc2dc46cSBarry Smith 0, 2612cc2dc46cSBarry Smith 0, 2613cc2dc46cSBarry Smith 0, 2614cc2dc46cSBarry Smith 0, 2615f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2616cc2dc46cSBarry Smith 0, 2617cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 261882094794SBarry Smith MatPermute_MPIBAIJ, 2619cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2620d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2621f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2622f14a1c24SBarry Smith MatView_MPIBAIJ, 2623357abbc8SBarry Smith 0, 26247843d17aSBarry Smith 0, 2625d519adbfSMatthew Knepley /*64*/ 0, 26267843d17aSBarry Smith 0, 26277843d17aSBarry Smith 0, 26287843d17aSBarry Smith 0, 26297843d17aSBarry Smith 0, 2630d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26317843d17aSBarry Smith 0, 263297304618SKris Buschelman 0, 263397304618SKris Buschelman 0, 263497304618SKris Buschelman 0, 2635d519adbfSMatthew Knepley /*74*/ 0, 2636f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 263797304618SKris Buschelman 0, 263897304618SKris Buschelman 0, 263997304618SKris Buschelman 0, 2640d519adbfSMatthew Knepley /*79*/ 0, 264197304618SKris Buschelman 0, 264297304618SKris Buschelman 0, 264397304618SKris Buschelman 0, 2644865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2645d519adbfSMatthew Knepley /*84*/ 0, 2646865e5f61SKris Buschelman 0, 2647865e5f61SKris Buschelman 0, 2648865e5f61SKris Buschelman 0, 2649865e5f61SKris Buschelman 0, 2650d519adbfSMatthew Knepley /*89*/ 0, 2651865e5f61SKris Buschelman 0, 2652865e5f61SKris Buschelman 0, 2653865e5f61SKris Buschelman 0, 2654865e5f61SKris Buschelman 0, 2655d519adbfSMatthew Knepley /*94*/ 0, 2656865e5f61SKris Buschelman 0, 2657865e5f61SKris Buschelman 0, 265899cafbc1SBarry Smith 0, 265999cafbc1SBarry Smith 0, 2660d519adbfSMatthew Knepley /*99*/ 0, 266199cafbc1SBarry Smith 0, 266299cafbc1SBarry Smith 0, 266399cafbc1SBarry Smith 0, 266499cafbc1SBarry Smith 0, 2665d519adbfSMatthew Knepley /*104*/0, 266699cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26678c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26688c7482ecSBarry Smith 0, 26698c7482ecSBarry Smith 0, 2670d519adbfSMatthew Knepley /*109*/0, 26718c7482ecSBarry Smith 0, 26728c7482ecSBarry Smith 0, 26738c7482ecSBarry Smith 0, 26748c7482ecSBarry Smith 0, 2675f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26768c7482ecSBarry Smith 0, 26778c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 26788c7482ecSBarry Smith }; 267979bdfe76SSatish Balay 2680e18c124aSSatish Balay EXTERN_C_BEGIN 26814a2ae208SSatish Balay #undef __FUNCT__ 26824a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2683be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26845ef9f2a5SBarry Smith { 26855ef9f2a5SBarry Smith PetscFunctionBegin; 26865ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26875ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26885ef9f2a5SBarry Smith PetscFunctionReturn(0); 26895ef9f2a5SBarry Smith } 2690e18c124aSSatish Balay EXTERN_C_END 269179bdfe76SSatish Balay 2692273d9f13SBarry Smith EXTERN_C_BEGIN 2693f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2694d94109b8SHong Zhang EXTERN_C_END 2695d94109b8SHong Zhang 2696b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2697aac34f13SBarry Smith #undef __FUNCT__ 2698aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2699cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2700aac34f13SBarry Smith { 2701b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2702b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2703b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2704b8d659d7SLisandro Dalcin PetscScalar *values=0; 2705aac34f13SBarry Smith PetscErrorCode ierr; 2706aac34f13SBarry Smith 2707aac34f13SBarry Smith PetscFunctionBegin; 2708b8d659d7SLisandro Dalcin 2709b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 271026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 271126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 271226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 271326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2714d0f46423SBarry Smith m = B->rmap->n/bs; 2715d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2716d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2717d0f46423SBarry Smith cend = B->cmap->rend/bs; 2718b8d659d7SLisandro Dalcin 2719cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2720*fca92195SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 2721aac34f13SBarry Smith for (i=0; i<m; i++) { 2722cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2723b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2724b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2725cf12db73SBarry Smith JJ = jj + ii[i]; 2726b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2727aac34f13SBarry Smith if (*JJ >= cstart) break; 2728aac34f13SBarry Smith JJ++; 2729aac34f13SBarry Smith } 2730aac34f13SBarry Smith d = 0; 2731b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2732aac34f13SBarry Smith if (*JJ++ >= cend) break; 2733aac34f13SBarry Smith d++; 2734aac34f13SBarry Smith } 2735aac34f13SBarry Smith d_nnz[i] = d; 2736b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2737aac34f13SBarry Smith } 2738aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2739*fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2740aac34f13SBarry Smith 2741b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2742b8d659d7SLisandro Dalcin if (!values) { 2743*fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2744b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2745b8d659d7SLisandro Dalcin } 2746b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2747b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2748cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2749cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2750cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2751b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2752aac34f13SBarry Smith } 2753aac34f13SBarry Smith 2754b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2755aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2756aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2757aac34f13SBarry Smith 2758aac34f13SBarry Smith PetscFunctionReturn(0); 2759aac34f13SBarry Smith } 2760b8d659d7SLisandro Dalcin EXTERN_C_END 2761aac34f13SBarry Smith 2762aac34f13SBarry Smith #undef __FUNCT__ 2763aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2764aac34f13SBarry Smith /*@C 2765aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2766aac34f13SBarry Smith (the default parallel PETSc format). 2767aac34f13SBarry Smith 2768aac34f13SBarry Smith Collective on MPI_Comm 2769aac34f13SBarry Smith 2770aac34f13SBarry Smith Input Parameters: 2771aac34f13SBarry Smith + A - the matrix 2772aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2773aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2774aac34f13SBarry Smith - v - optional values in the matrix 2775aac34f13SBarry Smith 2776aac34f13SBarry Smith Level: developer 2777aac34f13SBarry Smith 2778aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2779aac34f13SBarry Smith 2780aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2781aac34f13SBarry Smith @*/ 2782be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2783aac34f13SBarry Smith { 2784aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2785aac34f13SBarry Smith 2786aac34f13SBarry Smith PetscFunctionBegin; 2787aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2788aac34f13SBarry Smith if (f) { 2789aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2790aac34f13SBarry Smith } 2791aac34f13SBarry Smith PetscFunctionReturn(0); 2792aac34f13SBarry Smith } 2793aac34f13SBarry Smith 2794d94109b8SHong Zhang EXTERN_C_BEGIN 27954a2ae208SSatish Balay #undef __FUNCT__ 2796a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2797be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2798a23d5eceSKris Buschelman { 2799a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2800dfbe8321SBarry Smith PetscErrorCode ierr; 2801db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2802a23d5eceSKris Buschelman 2803a23d5eceSKris Buschelman PetscFunctionBegin; 2804db4efbfdSBarry Smith if (bs < 0) { 28057adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2806db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 28078c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2808db4efbfdSBarry Smith bs = PetscAbs(bs); 2809db4efbfdSBarry Smith } 2810db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2811db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2812db4efbfdSBarry Smith } 2813db4efbfdSBarry Smith bs = newbs; 2814db4efbfdSBarry Smith 2815a23d5eceSKris Buschelman 2816a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2817a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2818a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 281977431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 282077431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2821899cda47SBarry Smith 282226283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 282326283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 282426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 282526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2826899cda47SBarry Smith 2827a23d5eceSKris Buschelman if (d_nnz) { 2828d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 282977431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2830a23d5eceSKris Buschelman } 2831a23d5eceSKris Buschelman } 2832a23d5eceSKris Buschelman if (o_nnz) { 2833d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 283477431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2835a23d5eceSKris Buschelman } 2836a23d5eceSKris Buschelman } 2837a23d5eceSKris Buschelman 2838a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2839a23d5eceSKris Buschelman b->bs2 = bs*bs; 2840d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2841d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2842d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2843d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2844a23d5eceSKris Buschelman 2845a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2846d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2847a23d5eceSKris Buschelman } 2848d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2849d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2850d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2851d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2852a23d5eceSKris Buschelman 2853526dfc15SBarry Smith if (!B->preallocated) { 2854f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2855d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28569c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 285752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2858f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2859d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28609c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 286152e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28627adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2863526dfc15SBarry Smith } 2864a23d5eceSKris Buschelman 2865526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2866526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2867526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2868a23d5eceSKris Buschelman PetscFunctionReturn(0); 2869a23d5eceSKris Buschelman } 2870a23d5eceSKris Buschelman EXTERN_C_END 2871a23d5eceSKris Buschelman 2872a23d5eceSKris Buschelman EXTERN_C_BEGIN 2873be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2874be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 287592b32695SKris Buschelman EXTERN_C_END 28765bf65638SKris Buschelman 287782094794SBarry Smith 287882094794SBarry Smith EXTERN_C_BEGIN 287982094794SBarry Smith #undef __FUNCT__ 288082094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 288182094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 288282094794SBarry Smith { 288382094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 288482094794SBarry Smith PetscErrorCode ierr; 288582094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 288682094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 288782094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 288882094794SBarry Smith 288982094794SBarry Smith PetscFunctionBegin; 289082094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 289182094794SBarry Smith ii[0] = 0; 289282094794SBarry Smith CHKMEMQ; 289382094794SBarry Smith for (i=0; i<M; i++) { 289482094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 289582094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 289682094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 289782094794SBarry Smith /* remove one from count of matrix has diagonal */ 289882094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 289982094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 290082094794SBarry Smith } 290182094794SBarry Smith CHKMEMQ; 290282094794SBarry Smith } 290382094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 290482094794SBarry Smith cnt = 0; 290582094794SBarry Smith for (i=0; i<M; i++) { 290682094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 290782094794SBarry Smith if (garray[jo[j]] > rstart) break; 290882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 290982094794SBarry Smith CHKMEMQ; 291082094794SBarry Smith } 291182094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 291282094794SBarry Smith if (jd[k] != i) { 291382094794SBarry Smith jj[cnt++] = rstart + jd[k]; 291482094794SBarry Smith CHKMEMQ; 291582094794SBarry Smith } 291682094794SBarry Smith } 291782094794SBarry Smith for (;j<io[i+1]; j++) { 291882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 291982094794SBarry Smith CHKMEMQ; 292082094794SBarry Smith } 292182094794SBarry Smith } 292282094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 292382094794SBarry Smith PetscFunctionReturn(0); 292482094794SBarry Smith } 2925dbf0e21dSBarry Smith EXTERN_C_END 292682094794SBarry Smith 29270bad9183SKris Buschelman /*MC 2928fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29290bad9183SKris Buschelman 29300bad9183SKris Buschelman Options Database Keys: 29318c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29328c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29338c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29340bad9183SKris Buschelman 29350bad9183SKris Buschelman Level: beginner 29360bad9183SKris Buschelman 29370bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29380bad9183SKris Buschelman M*/ 29390bad9183SKris Buschelman 294092b32695SKris Buschelman EXTERN_C_BEGIN 2941a23d5eceSKris Buschelman #undef __FUNCT__ 29424a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2943be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2944273d9f13SBarry Smith { 2945273d9f13SBarry Smith Mat_MPIBAIJ *b; 2946dfbe8321SBarry Smith PetscErrorCode ierr; 2947273d9f13SBarry Smith PetscTruth flg; 2948273d9f13SBarry Smith 2949273d9f13SBarry Smith PetscFunctionBegin; 295038f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 295182502324SSatish Balay B->data = (void*)b; 295282502324SSatish Balay 2953085a36d4SBarry Smith 2954273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2955273d9f13SBarry Smith B->mapping = 0; 2956273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2957273d9f13SBarry Smith 2958273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29597adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29607adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2961273d9f13SBarry Smith 2962273d9f13SBarry Smith /* build local table of row and column ownerships */ 2963899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2964273d9f13SBarry Smith 2965273d9f13SBarry Smith /* build cache for off array entries formed */ 29667adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2967273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2968273d9f13SBarry Smith b->colmap = PETSC_NULL; 2969273d9f13SBarry Smith b->garray = PETSC_NULL; 2970273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2971273d9f13SBarry Smith 2972273d9f13SBarry Smith /* stuff used in block assembly */ 2973273d9f13SBarry Smith b->barray = 0; 2974273d9f13SBarry Smith 2975273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2976273d9f13SBarry Smith b->lvec = 0; 2977273d9f13SBarry Smith b->Mvctx = 0; 2978273d9f13SBarry Smith 2979273d9f13SBarry Smith /* stuff for MatGetRow() */ 2980273d9f13SBarry Smith b->rowindices = 0; 2981273d9f13SBarry Smith b->rowvalues = 0; 2982273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2983273d9f13SBarry Smith 2984273d9f13SBarry Smith /* hash table stuff */ 2985273d9f13SBarry Smith b->ht = 0; 2986273d9f13SBarry Smith b->hd = 0; 2987273d9f13SBarry Smith b->ht_size = 0; 2988273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2989273d9f13SBarry Smith b->ht_fact = 0; 2990273d9f13SBarry Smith b->ht_total_ct = 0; 2991273d9f13SBarry Smith b->ht_insert_ct = 0; 2992273d9f13SBarry Smith 29937adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29948c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2995273d9f13SBarry Smith if (flg) { 2996f6275e2eSBarry Smith PetscReal fact = 1.39; 29974e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29988c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2999273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 3000273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 30011e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3002273d9f13SBarry Smith } 30038c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 30048c07d4e3SBarry Smith 300582094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 300682094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 300782094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3008273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3009273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3010273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3011273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3012273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3013273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3014273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3015273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3016273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3017a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3018a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3019a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3020aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 302144ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3022aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 302392b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 302492b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 302592b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30265bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30275bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30285bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 302917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3030273d9f13SBarry Smith PetscFunctionReturn(0); 3031273d9f13SBarry Smith } 3032273d9f13SBarry Smith EXTERN_C_END 3033273d9f13SBarry Smith 3034209238afSKris Buschelman /*MC 3035002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3036209238afSKris Buschelman 3037209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3038209238afSKris Buschelman and MATMPIBAIJ otherwise. 3039209238afSKris Buschelman 3040209238afSKris Buschelman Options Database Keys: 3041209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3042209238afSKris Buschelman 3043209238afSKris Buschelman Level: beginner 3044209238afSKris Buschelman 3045aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3046209238afSKris Buschelman M*/ 3047209238afSKris Buschelman 3048209238afSKris Buschelman EXTERN_C_BEGIN 3049209238afSKris Buschelman #undef __FUNCT__ 3050209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3051be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3052dfbe8321SBarry Smith { 30536849ba73SBarry Smith PetscErrorCode ierr; 3054b24ad042SBarry Smith PetscMPIInt size; 3055209238afSKris Buschelman 3056209238afSKris Buschelman PetscFunctionBegin; 30577adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3058209238afSKris Buschelman if (size == 1) { 3059209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3060209238afSKris Buschelman } else { 3061209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3062209238afSKris Buschelman } 3063209238afSKris Buschelman PetscFunctionReturn(0); 3064209238afSKris Buschelman } 3065209238afSKris Buschelman EXTERN_C_END 3066209238afSKris Buschelman 30674a2ae208SSatish Balay #undef __FUNCT__ 30684a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3069273d9f13SBarry Smith /*@C 3070aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3071273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3072273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3073273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3074273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3075273d9f13SBarry Smith 3076273d9f13SBarry Smith Collective on Mat 3077273d9f13SBarry Smith 3078273d9f13SBarry Smith Input Parameters: 3079273d9f13SBarry Smith + A - the matrix 3080273d9f13SBarry Smith . bs - size of blockk 3081273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3082273d9f13SBarry Smith submatrix (same for all local rows) 3083273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3084273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3085273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3086273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3087273d9f13SBarry Smith submatrix (same for all local rows). 3088273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3089273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3090273d9f13SBarry Smith each block row) or PETSC_NULL. 3091273d9f13SBarry Smith 309249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3093273d9f13SBarry Smith 3094273d9f13SBarry Smith Options Database Keys: 30958c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30968c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3097273d9f13SBarry Smith 3098273d9f13SBarry Smith Notes: 3099273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3100273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3101273d9f13SBarry Smith 3102273d9f13SBarry Smith Storage Information: 3103273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3104273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3105273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3106273d9f13SBarry Smith local matrix (a rectangular submatrix). 3107273d9f13SBarry Smith 3108273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3109273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3110273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3111273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3112273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3113273d9f13SBarry Smith 3114273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3115273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3116273d9f13SBarry Smith 3117273d9f13SBarry Smith .vb 3118273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3119273d9f13SBarry Smith ------------------- 3120273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3121273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3122273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3123273d9f13SBarry Smith ------------------- 3124273d9f13SBarry Smith .ve 3125273d9f13SBarry Smith 3126273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3127273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3128273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3129273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3130273d9f13SBarry Smith 3131273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3132273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3133273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3134273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3135273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3136273d9f13SBarry Smith matrices. 3137273d9f13SBarry Smith 3138aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3139aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3140aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3141aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3142aa95bbe8SBarry Smith 3143273d9f13SBarry Smith Level: intermediate 3144273d9f13SBarry Smith 3145273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3146273d9f13SBarry Smith 3147aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3148273d9f13SBarry Smith @*/ 3149be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3150273d9f13SBarry Smith { 3151b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3152273d9f13SBarry Smith 3153273d9f13SBarry Smith PetscFunctionBegin; 3154a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3155a23d5eceSKris Buschelman if (f) { 3156a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3157273d9f13SBarry Smith } 3158273d9f13SBarry Smith PetscFunctionReturn(0); 3159273d9f13SBarry Smith } 3160273d9f13SBarry Smith 31614a2ae208SSatish Balay #undef __FUNCT__ 31624a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 316379bdfe76SSatish Balay /*@C 316479bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 316579bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 316679bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 316779bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 316879bdfe76SSatish Balay performance can be increased by more than a factor of 50. 316979bdfe76SSatish Balay 3170db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3171db81eaa0SLois Curfman McInnes 317279bdfe76SSatish Balay Input Parameters: 3173db81eaa0SLois Curfman McInnes + comm - MPI communicator 317479bdfe76SSatish Balay . bs - size of blockk 317579bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 317692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 317792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 317892e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 317992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 318092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3181be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3182be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 318347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 318479bdfe76SSatish Balay submatrix (same for all local rows) 318547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 318692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3187db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 318847a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 318979bdfe76SSatish Balay submatrix (same for all local rows). 319047a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 319192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 319292e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 319379bdfe76SSatish Balay 319479bdfe76SSatish Balay Output Parameter: 319579bdfe76SSatish Balay . A - the matrix 319679bdfe76SSatish Balay 3197db81eaa0SLois Curfman McInnes Options Database Keys: 31988c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31998c07d4e3SBarry Smith - -mat_use_hash_table <fact> 32003ffaccefSLois Curfman McInnes 3201175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3202ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3203175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3204175b88e8SBarry Smith 3205b259b22eSLois Curfman McInnes Notes: 320649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 320749a6f317SBarry Smith 320847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 320947a75d0bSBarry Smith 321079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 321179bdfe76SSatish Balay (possibly both). 321279bdfe76SSatish Balay 3213be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3214be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3215be79a94dSBarry Smith 321679bdfe76SSatish Balay Storage Information: 321779bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 321879bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 321979bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 322079bdfe76SSatish Balay local matrix (a rectangular submatrix). 322179bdfe76SSatish Balay 322279bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 322379bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 322479bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 322579bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 322679bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 322779bdfe76SSatish Balay 322879bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 322979bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 323079bdfe76SSatish Balay 3231db81eaa0SLois Curfman McInnes .vb 3232db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3233db81eaa0SLois Curfman McInnes ------------------- 3234db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3235db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3236db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3237db81eaa0SLois Curfman McInnes ------------------- 3238db81eaa0SLois Curfman McInnes .ve 323979bdfe76SSatish Balay 324079bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 324179bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 324279bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 324357b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 324479bdfe76SSatish Balay 3245d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3246d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 324779bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 324892e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 324992e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32506da5968aSLois Curfman McInnes matrices. 325179bdfe76SSatish Balay 3252027ccd11SLois Curfman McInnes Level: intermediate 3253027ccd11SLois Curfman McInnes 325492e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 325579bdfe76SSatish Balay 3256aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 325779bdfe76SSatish Balay @*/ 3258be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 325979bdfe76SSatish Balay { 32606849ba73SBarry Smith PetscErrorCode ierr; 3261b24ad042SBarry Smith PetscMPIInt size; 326279bdfe76SSatish Balay 3263d64ed03dSBarry Smith PetscFunctionBegin; 3264f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3265f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3266d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3267273d9f13SBarry Smith if (size > 1) { 3268273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3269273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3270273d9f13SBarry Smith } else { 3271273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3272273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32733914022bSBarry Smith } 32743a40ed3dSBarry Smith PetscFunctionReturn(0); 327579bdfe76SSatish Balay } 3276026e39d0SSatish Balay 32774a2ae208SSatish Balay #undef __FUNCT__ 32784a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32800ac07820SSatish Balay { 32810ac07820SSatish Balay Mat mat; 32820ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3283dfbe8321SBarry Smith PetscErrorCode ierr; 3284b24ad042SBarry Smith PetscInt len=0; 32850ac07820SSatish Balay 3286d64ed03dSBarry Smith PetscFunctionBegin; 32870ac07820SSatish Balay *newmat = 0; 32887adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3289d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32907adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32911d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32927fff6886SHong Zhang 32934beb1cfeSHong Zhang mat->factor = matin->factor; 3294273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32950ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32967fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32977fff6886SHong Zhang 3298273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3299d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 33000ac07820SSatish Balay a->bs2 = oldmat->bs2; 33010ac07820SSatish Balay a->mbs = oldmat->mbs; 33020ac07820SSatish Balay a->nbs = oldmat->nbs; 33030ac07820SSatish Balay a->Mbs = oldmat->Mbs; 33040ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33050ac07820SSatish Balay 330626283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 330726283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3308899cda47SBarry Smith 33090ac07820SSatish Balay a->size = oldmat->size; 33100ac07820SSatish Balay a->rank = oldmat->rank; 3311aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3312aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3313aef5e8e0SSatish Balay a->rowindices = 0; 33140ac07820SSatish Balay a->rowvalues = 0; 33150ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 331630793edcSSatish Balay a->barray = 0; 3317899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3318899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3319899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3320899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33210ac07820SSatish Balay 3322133cdb44SSatish Balay /* hash table stuff */ 3323133cdb44SSatish Balay a->ht = 0; 3324133cdb44SSatish Balay a->hd = 0; 3325133cdb44SSatish Balay a->ht_size = 0; 3326133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 332725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3328133cdb44SSatish Balay a->ht_total_ct = 0; 3329133cdb44SSatish Balay a->ht_insert_ct = 0; 3330133cdb44SSatish Balay 3331899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33327adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 3333d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33340ac07820SSatish Balay if (oldmat->colmap) { 3335aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33360f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 333748e59246SSatish Balay #else 3338b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 333952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3340b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 334148e59246SSatish Balay #endif 33420ac07820SSatish Balay } else a->colmap = 0; 33434beb1cfeSHong Zhang 33440ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3345b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 334652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3347b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33480ac07820SSatish Balay } else a->garray = 0; 33490ac07820SSatish Balay 33500ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 335152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33520ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 335352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33547fff6886SHong Zhang 33552e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 335652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33572e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 335852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33597adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33600ac07820SSatish Balay *newmat = mat; 33614beb1cfeSHong Zhang 33623a40ed3dSBarry Smith PetscFunctionReturn(0); 33630ac07820SSatish Balay } 336457b952d6SSatish Balay 3365e090d566SSatish Balay #include "petscsys.h" 336657b952d6SSatish Balay 33674a2ae208SSatish Balay #undef __FUNCT__ 33684a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3369a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 337057b952d6SSatish Balay { 337157b952d6SSatish Balay Mat A; 33726849ba73SBarry Smith PetscErrorCode ierr; 3373b24ad042SBarry Smith int fd; 3374b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 337587828ca2SBarry Smith PetscScalar *vals,*buf; 337657b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 337757b952d6SSatish Balay MPI_Status status; 3378b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3379b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3380910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3381167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3382dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3383910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3384dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 338557b952d6SSatish Balay 3386d64ed03dSBarry Smith PetscFunctionBegin; 338777925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33888c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33898c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 339057b952d6SSatish Balay 3391d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3392d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 339357b952d6SSatish Balay if (!rank) { 3394b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3395e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3396552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33976c5fab8fSBarry Smith } 3398d64ed03dSBarry Smith 3399b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 340057b952d6SSatish Balay M = header[1]; N = header[2]; 340157b952d6SSatish Balay 340229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 340357b952d6SSatish Balay 340457b952d6SSatish Balay /* 340557b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 340657b952d6SSatish Balay divisible by the blocksize 340757b952d6SSatish Balay */ 340857b952d6SSatish Balay Mbs = M/bs; 3409dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 341057b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 341157b952d6SSatish Balay else Mbs++; 341257b952d6SSatish Balay if (extra_rows && !rank) { 34131e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 341457b952d6SSatish Balay } 3415537820f0SBarry Smith 341657b952d6SSatish Balay /* determine ownership of all rows */ 341757b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 341857b952d6SSatish Balay m = mbs*bs; 3419dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3420b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3421167e7480SBarry Smith 3422167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3423167e7480SBarry Smith if (!rank) { 3424167e7480SBarry Smith mmax = rowners[1]; 3425167e7480SBarry Smith for (i=2; i<size; i++) { 3426167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3427167e7480SBarry Smith } 3428ca02efcfSSatish Balay mmax*=bs; 3429167e7480SBarry Smith } else mmax = m; 3430167e7480SBarry Smith 343157b952d6SSatish Balay rowners[0] = 0; 3432cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3433cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 343457b952d6SSatish Balay rstart = rowners[rank]; 343557b952d6SSatish Balay rend = rowners[rank+1]; 343657b952d6SSatish Balay 343757b952d6SSatish Balay /* distribute row lengths to all processors */ 343819c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 343957b952d6SSatish Balay if (!rank) { 3440dc231df0SBarry Smith mend = m; 3441dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3442dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3443dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3444dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3445b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3446b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3447dc231df0SBarry Smith for (j=0; j<m; j++) { 3448dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3449dc231df0SBarry Smith } 3450dc231df0SBarry Smith for (i=1; i<size; i++) { 3451dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3452dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3453dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3454dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3455dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3456dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 345757b952d6SSatish Balay procsnz[i] += rowlengths[j]; 345857b952d6SSatish Balay } 3459dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 346057b952d6SSatish Balay } 3461606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3462dc231df0SBarry Smith } else { 3463dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3464dc231df0SBarry Smith } 346557b952d6SSatish Balay 3466dc231df0SBarry Smith if (!rank) { 346757b952d6SSatish Balay /* determine max buffer needed and allocate it */ 34688a8e0b3aSBarry Smith maxnz = procsnz[0]; 3469cdc0ba36SBarry Smith for (i=1; i<size; i++) { 347057b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 347157b952d6SSatish Balay } 3472b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 347357b952d6SSatish Balay 347457b952d6SSatish Balay /* read in my part of the matrix column indices */ 347557b952d6SSatish Balay nz = procsnz[0]; 347619c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 347757b952d6SSatish Balay mycols = ibuf; 3478cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3479e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3480cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3481cee3aa6bSSatish Balay 348257b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 348357b952d6SSatish Balay for (i=1; i<size-1; i++) { 348457b952d6SSatish Balay nz = procsnz[i]; 3485e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3486b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 348757b952d6SSatish Balay } 348857b952d6SSatish Balay /* read in the stuff for the last proc */ 348957b952d6SSatish Balay if (size != 1) { 349057b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3491e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 349257b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3493b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 349457b952d6SSatish Balay } 3495606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3496d64ed03dSBarry Smith } else { 349757b952d6SSatish Balay /* determine buffer space needed for message */ 349857b952d6SSatish Balay nz = 0; 349957b952d6SSatish Balay for (i=0; i<m; i++) { 350057b952d6SSatish Balay nz += locrowlens[i]; 350157b952d6SSatish Balay } 350219c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 350357b952d6SSatish Balay mycols = ibuf; 350457b952d6SSatish Balay /* receive message of column indices*/ 3505b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3506b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 350729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 350857b952d6SSatish Balay } 350957b952d6SSatish Balay 351057b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3511dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3512dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3513dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3514dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3515dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 351657b952d6SSatish Balay rowcount = 0; nzcount = 0; 351757b952d6SSatish Balay for (i=0; i<mbs; i++) { 351857b952d6SSatish Balay dcount = 0; 351957b952d6SSatish Balay odcount = 0; 352057b952d6SSatish Balay for (j=0; j<bs; j++) { 352157b952d6SSatish Balay kmax = locrowlens[rowcount]; 352257b952d6SSatish Balay for (k=0; k<kmax; k++) { 352357b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 352457b952d6SSatish Balay if (!mask[tmp]) { 352557b952d6SSatish Balay mask[tmp] = 1; 352657b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 352757b952d6SSatish Balay else masked1[dcount++] = tmp; 352857b952d6SSatish Balay } 352957b952d6SSatish Balay } 353057b952d6SSatish Balay rowcount++; 353157b952d6SSatish Balay } 3532cee3aa6bSSatish Balay 353357b952d6SSatish Balay dlens[i] = dcount; 353457b952d6SSatish Balay odlens[i] = odcount; 3535cee3aa6bSSatish Balay 353657b952d6SSatish Balay /* zero out the mask elements we set */ 353757b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 353857b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 353957b952d6SSatish Balay } 3540cee3aa6bSSatish Balay 354157b952d6SSatish Balay /* create our matrix */ 3542f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3543f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 354478ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 354578ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 354678ae41b4SKris Buschelman 354757b952d6SSatish Balay if (!rank) { 354819c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 354957b952d6SSatish Balay /* read in my part of the matrix numerical values */ 355057b952d6SSatish Balay nz = procsnz[0]; 355157b952d6SSatish Balay vals = buf; 3552cee3aa6bSSatish Balay mycols = ibuf; 3553cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3554e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3555cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3556537820f0SBarry Smith 355757b952d6SSatish Balay /* insert into matrix */ 355857b952d6SSatish Balay jj = rstart*bs; 355957b952d6SSatish Balay for (i=0; i<m; i++) { 3560dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 356157b952d6SSatish Balay mycols += locrowlens[i]; 356257b952d6SSatish Balay vals += locrowlens[i]; 356357b952d6SSatish Balay jj++; 356457b952d6SSatish Balay } 356557b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 356657b952d6SSatish Balay for (i=1; i<size-1; i++) { 356757b952d6SSatish Balay nz = procsnz[i]; 356857b952d6SSatish Balay vals = buf; 3569e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35707adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 357157b952d6SSatish Balay } 357257b952d6SSatish Balay /* the last proc */ 357357b952d6SSatish Balay if (size != 1){ 357457b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3575cee3aa6bSSatish Balay vals = buf; 3576e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 357757b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35787adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 357957b952d6SSatish Balay } 3580606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3581d64ed03dSBarry Smith } else { 358257b952d6SSatish Balay /* receive numeric values */ 358319c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 358457b952d6SSatish Balay 358557b952d6SSatish Balay /* receive message of values*/ 358657b952d6SSatish Balay vals = buf; 3587cee3aa6bSSatish Balay mycols = ibuf; 35887adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3589ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 359029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 359157b952d6SSatish Balay 359257b952d6SSatish Balay /* insert into matrix */ 359357b952d6SSatish Balay jj = rstart*bs; 3594cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3595dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 359657b952d6SSatish Balay mycols += locrowlens[i]; 359757b952d6SSatish Balay vals += locrowlens[i]; 359857b952d6SSatish Balay jj++; 359957b952d6SSatish Balay } 360057b952d6SSatish Balay } 3601606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3602606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3603606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3604dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3605dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3606dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36076d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36086d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 360978ae41b4SKris Buschelman 361078ae41b4SKris Buschelman *newmat = A; 36113a40ed3dSBarry Smith PetscFunctionReturn(0); 361257b952d6SSatish Balay } 361357b952d6SSatish Balay 36144a2ae208SSatish Balay #undef __FUNCT__ 36154a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3616133cdb44SSatish Balay /*@ 3617133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3618133cdb44SSatish Balay 3619133cdb44SSatish Balay Input Parameters: 3620133cdb44SSatish Balay . mat - the matrix 3621133cdb44SSatish Balay . fact - factor 3622133cdb44SSatish Balay 3623fee21e36SBarry Smith Collective on Mat 3624fee21e36SBarry Smith 36258c890885SBarry Smith Level: advanced 36268c890885SBarry Smith 3627133cdb44SSatish Balay Notes: 36288c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3629133cdb44SSatish Balay 3630133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3631133cdb44SSatish Balay 3632133cdb44SSatish Balay .seealso: MatSetOption() 3633133cdb44SSatish Balay @*/ 3634be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3635133cdb44SSatish Balay { 3636dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36375bf65638SKris Buschelman 36385bf65638SKris Buschelman PetscFunctionBegin; 36395bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36405bf65638SKris Buschelman if (f) { 36415bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36425bf65638SKris Buschelman } 36435bf65638SKris Buschelman PetscFunctionReturn(0); 36445bf65638SKris Buschelman } 36455bf65638SKris Buschelman 3646be1d678aSKris Buschelman EXTERN_C_BEGIN 36475bf65638SKris Buschelman #undef __FUNCT__ 36485bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3649be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36505bf65638SKris Buschelman { 365125fdafccSSatish Balay Mat_MPIBAIJ *baij; 3652133cdb44SSatish Balay 3653133cdb44SSatish Balay PetscFunctionBegin; 3654133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3655133cdb44SSatish Balay baij->ht_fact = fact; 3656133cdb44SSatish Balay PetscFunctionReturn(0); 3657133cdb44SSatish Balay } 3658be1d678aSKris Buschelman EXTERN_C_END 3659f2a5309cSSatish Balay 36604a2ae208SSatish Balay #undef __FUNCT__ 36614a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3662be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3663f2a5309cSSatish Balay { 3664f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3665f2a5309cSSatish Balay PetscFunctionBegin; 3666f2a5309cSSatish Balay *Ad = a->A; 3667f2a5309cSSatish Balay *Ao = a->B; 3668195d93cdSBarry Smith *colmap = a->garray; 3669f2a5309cSSatish Balay PetscFunctionReturn(0); 3670f2a5309cSSatish Balay } 367185535b8eSBarry Smith 367285535b8eSBarry Smith /* 367385535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 367485535b8eSBarry Smith */ 367585535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 367685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 367785535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 367885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 367985535b8eSBarry Smith #endif 368085535b8eSBarry Smith 368185535b8eSBarry Smith #undef __FUNCT__ 368285535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 368385535b8eSBarry Smith /*@C 368485535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 368585535b8eSBarry Smith 368685535b8eSBarry Smith Collective on Mat 368785535b8eSBarry Smith 368885535b8eSBarry Smith Input Parameters: 368985535b8eSBarry Smith + mat - the matrix 369085535b8eSBarry Smith . min - number of input rows 369185535b8eSBarry Smith . im - input rows 369285535b8eSBarry Smith . nin - number of input columns 369385535b8eSBarry Smith . in - input columns 369485535b8eSBarry Smith . v - numerical values input 369585535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 369685535b8eSBarry Smith 369785535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 369885535b8eSBarry Smith 369985535b8eSBarry Smith Level: advanced 370085535b8eSBarry Smith 370185535b8eSBarry Smith .seealso: MatSetValuesBlocked() 370285535b8eSBarry Smith @*/ 370385535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 370485535b8eSBarry Smith { 370585535b8eSBarry Smith /* convert input arguments to C version */ 370685535b8eSBarry Smith Mat mat = *matin; 370785535b8eSBarry Smith PetscInt m = *min, n = *nin; 370885535b8eSBarry Smith InsertMode addv = *addvin; 370985535b8eSBarry Smith 371085535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 371185535b8eSBarry Smith const MatScalar *value; 371285535b8eSBarry Smith MatScalar *barray=baij->barray; 371385535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 371485535b8eSBarry Smith PetscErrorCode ierr; 371585535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 371685535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3717d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 371885535b8eSBarry Smith 371985535b8eSBarry Smith PetscFunctionBegin; 372085535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 372185535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 372285535b8eSBarry Smith mat->insertmode = addv; 372385535b8eSBarry Smith } 372485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 372585535b8eSBarry Smith else if (mat->insertmode != addv) { 372685535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 372785535b8eSBarry Smith } 372885535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 372985535b8eSBarry Smith #endif 373085535b8eSBarry Smith if (mat->assembled) { 373185535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 373285535b8eSBarry Smith mat->assembled = PETSC_FALSE; 373385535b8eSBarry Smith } 373485535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 373585535b8eSBarry Smith 373685535b8eSBarry Smith 373785535b8eSBarry Smith if(!barray) { 373885535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 373985535b8eSBarry Smith baij->barray = barray; 374085535b8eSBarry Smith } 374185535b8eSBarry Smith 374285535b8eSBarry Smith if (roworiented) { 374385535b8eSBarry Smith stepval = (n-1)*bs; 374485535b8eSBarry Smith } else { 374585535b8eSBarry Smith stepval = (m-1)*bs; 374685535b8eSBarry Smith } 374785535b8eSBarry Smith for (i=0; i<m; i++) { 374885535b8eSBarry Smith if (im[i] < 0) continue; 374985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 375085535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 375185535b8eSBarry Smith #endif 375285535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 375385535b8eSBarry Smith row = im[i] - rstart; 375485535b8eSBarry Smith for (j=0; j<n; j++) { 375585535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 375685535b8eSBarry Smith if ((roworiented) && (n == 1)) { 375785535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 375885535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 375985535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 376085535b8eSBarry Smith } else { /* Here a copy is required */ 376185535b8eSBarry Smith if (roworiented) { 376285535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 376385535b8eSBarry Smith } else { 376485535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 376585535b8eSBarry Smith } 376685535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 376785535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 376885535b8eSBarry Smith *barray++ = *value++; 376985535b8eSBarry Smith } 377085535b8eSBarry Smith } 377185535b8eSBarry Smith barray -=bs2; 377285535b8eSBarry Smith } 377385535b8eSBarry Smith 377485535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 377585535b8eSBarry Smith col = in[j] - cstart; 377697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 377785535b8eSBarry Smith } 377885535b8eSBarry Smith else if (in[j] < 0) continue; 377985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 378085535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 378185535b8eSBarry Smith #endif 378285535b8eSBarry Smith else { 378385535b8eSBarry Smith if (mat->was_assembled) { 378485535b8eSBarry Smith if (!baij->colmap) { 378585535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 378685535b8eSBarry Smith } 378785535b8eSBarry Smith 378885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 378985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 379085535b8eSBarry Smith { PetscInt data; 379185535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 379285535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 379385535b8eSBarry Smith } 379485535b8eSBarry Smith #else 379585535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 379685535b8eSBarry Smith #endif 379785535b8eSBarry Smith #endif 379885535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 379985535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 380085535b8eSBarry Smith col = (col - 1)/bs; 380185535b8eSBarry Smith #else 380285535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 380385535b8eSBarry Smith #endif 380485535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 380585535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 380685535b8eSBarry Smith col = in[j]; 380785535b8eSBarry Smith } 380885535b8eSBarry Smith } 380985535b8eSBarry Smith else col = in[j]; 381097e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 381185535b8eSBarry Smith } 381285535b8eSBarry Smith } 381385535b8eSBarry Smith } else { 381485535b8eSBarry Smith if (!baij->donotstash) { 381585535b8eSBarry Smith if (roworiented) { 381685535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 381785535b8eSBarry Smith } else { 381885535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 381985535b8eSBarry Smith } 382085535b8eSBarry Smith } 382185535b8eSBarry Smith } 382285535b8eSBarry Smith } 382385535b8eSBarry Smith 382485535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 382585535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 382685535b8eSBarry Smith PetscFunctionReturn(0); 382785535b8eSBarry Smith } 3828