xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision fdfbdca60871d1230bda7d5d096e2bd2d2a23f7a)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
614e879edeSHong Zhang   PetscScalar       *va, *vv;
624e879edeSHong Zhang   Vec                vB, vA;
634e879edeSHong Zhang   const PetscScalar *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
669566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
101d71ae5a4SJacob Faibussowitsch {
1027fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1037fc3c18eSBarry Smith 
1047fc3c18eSBarry Smith   PetscFunctionBegin;
1059566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1069566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087fc3c18eSBarry Smith }
1097fc3c18eSBarry Smith 
11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
111d71ae5a4SJacob Faibussowitsch {
1127fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1137fc3c18eSBarry Smith 
1147fc3c18eSBarry Smith   PetscFunctionBegin;
1159566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1169566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1187fc3c18eSBarry Smith }
1197fc3c18eSBarry Smith 
120537820f0SBarry Smith /*
121537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
12257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
123e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
12457b952d6SSatish Balay    length of colmap equals the global matrix length.
12557b952d6SSatish Balay */
126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
127d71ae5a4SJacob Faibussowitsch {
12857b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
12957b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
130d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
13157b952d6SSatish Balay 
132d64ed03dSBarry Smith   PetscFunctionBegin;
133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
134eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
135c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
13648e59246SSatish Balay #else
1379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
138928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
13948e59246SSatish Balay #endif
1403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14157b952d6SSatish Balay }
14257b952d6SSatish Balay 
143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
144a8f51744SPierre Jolivet   do { \
14580c1aa95SSatish Balay     brow = row / bs; \
1469371c9d4SSatish Balay     rp   = aj + ai[brow]; \
1479371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
1489371c9d4SSatish Balay     rmax = aimax[brow]; \
1499371c9d4SSatish Balay     nrow = ailen[brow]; \
15080c1aa95SSatish Balay     bcol = col / bs; \
1519371c9d4SSatish Balay     ridx = row % bs; \
1529371c9d4SSatish Balay     cidx = col % bs; \
1539371c9d4SSatish Balay     low  = 0; \
1549371c9d4SSatish Balay     high = nrow; \
155ab26458aSBarry Smith     while (high - low > 3) { \
156ab26458aSBarry Smith       t = (low + high) / 2; \
157ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
158ab26458aSBarry Smith       else low = t; \
159ab26458aSBarry Smith     } \
160ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
16180c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
16280c1aa95SSatish Balay       if (rp[_i] == bcol) { \
16380c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
164eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
165eada6651SSatish Balay         else *bap = value; \
166ac7a638eSSatish Balay         goto a_noinsert; \
16780c1aa95SSatish Balay       } \
16880c1aa95SSatish Balay     } \
16989280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1705f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
171fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
17280c1aa95SSatish Balay     N = nrow++ - 1; \
17380c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1759566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1769566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
17780c1aa95SSatish Balay     rp[_i]                          = bcol; \
17880c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
179ac7a638eSSatish Balay   a_noinsert:; \
18080c1aa95SSatish Balay     ailen[brow] = nrow; \
181a8f51744SPierre Jolivet   } while (0)
18257b952d6SSatish Balay 
183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
184a8f51744SPierre Jolivet   do { \
185ac7a638eSSatish Balay     brow = row / bs; \
1869371c9d4SSatish Balay     rp   = bj + bi[brow]; \
1879371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
1889371c9d4SSatish Balay     rmax = bimax[brow]; \
1899371c9d4SSatish Balay     nrow = bilen[brow]; \
190ac7a638eSSatish Balay     bcol = col / bs; \
1919371c9d4SSatish Balay     ridx = row % bs; \
1929371c9d4SSatish Balay     cidx = col % bs; \
1939371c9d4SSatish Balay     low  = 0; \
1949371c9d4SSatish Balay     high = nrow; \
195ac7a638eSSatish Balay     while (high - low > 3) { \
196ac7a638eSSatish Balay       t = (low + high) / 2; \
197ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
198ac7a638eSSatish Balay       else low = t; \
199ac7a638eSSatish Balay     } \
200ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
201ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
202ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
203ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
204ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
205ac7a638eSSatish Balay         else *bap = value; \
206ac7a638eSSatish Balay         goto b_noinsert; \
207ac7a638eSSatish Balay       } \
208ac7a638eSSatish Balay     } \
20989280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2105f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
211fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
212ac7a638eSSatish Balay     N = nrow++ - 1; \
213ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2149566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2159566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2169566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
217ac7a638eSSatish Balay     rp[_i]                          = bcol; \
218ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
219ac7a638eSSatish Balay   b_noinsert:; \
220ac7a638eSSatish Balay     bilen[brow] = nrow; \
221a8f51744SPierre Jolivet   } while (0)
222ac7a638eSSatish Balay 
223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
224d71ae5a4SJacob Faibussowitsch {
22557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
22693fea6afSBarry Smith   MatScalar    value;
227ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
228b24ad042SBarry Smith   PetscInt     i, j, row, col;
229d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
230d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
231d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
23257b952d6SSatish Balay 
233eada6651SSatish Balay   /* Some Variables required in the macro */
23480c1aa95SSatish Balay   Mat          A     = baij->A;
23580c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
236b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2373eda8832SBarry Smith   MatScalar   *aa = a->a;
238ac7a638eSSatish Balay 
239ac7a638eSSatish Balay   Mat          B     = baij->B;
240ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
241b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2423eda8832SBarry Smith   MatScalar   *ba = b->a;
243ac7a638eSSatish Balay 
244b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
245b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2463eda8832SBarry Smith   MatScalar *ap, *bap;
24780c1aa95SSatish Balay 
248d64ed03dSBarry Smith   PetscFunctionBegin;
24957b952d6SSatish Balay   for (i = 0; i < m; i++) {
2505ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2515f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
25257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
25357b952d6SSatish Balay       row = im[i] - rstart_orig;
25457b952d6SSatish Balay       for (j = 0; j < n; j++) {
25557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
25657b952d6SSatish Balay           col = in[j] - cstart_orig;
257db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
258db4deed7SKarl Rupp           else value = v[i + j * m];
259d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
260f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
261f7d195e4SLawrence Mitchell           continue;
262f7d195e4SLawrence Mitchell         } else {
263f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
26457b952d6SSatish Balay           if (mat->was_assembled) {
26548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
267eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
268bba1ac68SSatish Balay             col = col - 1;
26948e59246SSatish Balay #else
270bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
27148e59246SSatish Balay #endif
272c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
2739566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2748295de27SSatish Balay               col = in[j];
2759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2769bf004c3SSatish Balay               B     = baij->B;
2779bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2789371c9d4SSatish Balay               bimax = b->imax;
2799371c9d4SSatish Balay               bi    = b->i;
2809371c9d4SSatish Balay               bilen = b->ilen;
2819371c9d4SSatish Balay               bj    = b->j;
2829bf004c3SSatish Balay               ba    = b->a;
283f7d195e4SLawrence Mitchell             } else {
284f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
285f7d195e4SLawrence Mitchell               col += in[j] % bs;
286f7d195e4SLawrence Mitchell             }
2878295de27SSatish Balay           } else col = in[j];
288db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
289db4deed7SKarl Rupp           else value = v[i + j * m];
290d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
2919566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
29257b952d6SSatish Balay         }
29357b952d6SSatish Balay       }
294d64ed03dSBarry Smith     } else {
2955f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
29690f02eecSBarry Smith       if (!baij->donotstash) {
2975080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
298ff2fd236SBarry Smith         if (roworiented) {
2999566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
300ff2fd236SBarry Smith         } else {
3019566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
30257b952d6SSatish Balay         }
30357b952d6SSatish Balay       }
30457b952d6SSatish Balay     }
30590f02eecSBarry Smith   }
3063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30757b952d6SSatish Balay }
30857b952d6SSatish Balay 
309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
310d71ae5a4SJacob Faibussowitsch {
311880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3128ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
313880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3148ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
315880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
316880c6e6aSBarry Smith   const PetscScalar *value       = v;
317880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
318880c6e6aSBarry Smith 
319880c6e6aSBarry Smith   PetscFunctionBegin;
320880c6e6aSBarry Smith   rp    = aj + ai[row];
321880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
322880c6e6aSBarry Smith   rmax  = imax[row];
323880c6e6aSBarry Smith   nrow  = ailen[row];
3248ab52850SBarry Smith   value = v;
3258ab52850SBarry Smith   low   = 0;
3268ab52850SBarry Smith   high  = nrow;
327880c6e6aSBarry Smith   while (high - low > 7) {
328880c6e6aSBarry Smith     t = (low + high) / 2;
329880c6e6aSBarry Smith     if (rp[t] > col) high = t;
330880c6e6aSBarry Smith     else low = t;
331880c6e6aSBarry Smith   }
332880c6e6aSBarry Smith   for (i = low; i < high; i++) {
333880c6e6aSBarry Smith     if (rp[i] > col) break;
334880c6e6aSBarry Smith     if (rp[i] == col) {
335880c6e6aSBarry Smith       bap = ap + bs2 * i;
336880c6e6aSBarry Smith       if (roworiented) {
337880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3388ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
339ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
340880c6e6aSBarry Smith           }
341880c6e6aSBarry Smith         } else {
3428ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
343ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
344880c6e6aSBarry Smith           }
345880c6e6aSBarry Smith         }
346880c6e6aSBarry Smith       } else {
347880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3488ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
349ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
350880c6e6aSBarry Smith             bap += bs;
351880c6e6aSBarry Smith           }
352880c6e6aSBarry Smith         } else {
3538ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
354ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
355880c6e6aSBarry Smith             bap += bs;
356880c6e6aSBarry Smith           }
357880c6e6aSBarry Smith         }
358880c6e6aSBarry Smith       }
359880c6e6aSBarry Smith       goto noinsert2;
360880c6e6aSBarry Smith     }
361880c6e6aSBarry Smith   }
362880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3635f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
364880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3659371c9d4SSatish Balay   N = nrow++ - 1;
3669371c9d4SSatish Balay   high++;
367880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3689566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3699566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
370880c6e6aSBarry Smith   rp[i] = col;
371880c6e6aSBarry Smith   bap   = ap + bs2 * i;
372880c6e6aSBarry Smith   if (roworiented) {
3738ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
374ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
375880c6e6aSBarry Smith     }
376880c6e6aSBarry Smith   } else {
3778ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
378ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
379880c6e6aSBarry Smith     }
380880c6e6aSBarry Smith   }
381880c6e6aSBarry Smith noinsert2:;
382880c6e6aSBarry Smith   ailen[row] = nrow;
3833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
384880c6e6aSBarry Smith }
385880c6e6aSBarry Smith 
3868ab52850SBarry Smith /*
3878ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3888ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3898ab52850SBarry Smith */
39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
391d71ae5a4SJacob Faibussowitsch {
392ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
393dd6ea824SBarry Smith   const PetscScalar *value;
394f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
395ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
396899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
397899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
398d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
399ab26458aSBarry Smith 
400b16ae2b1SBarry Smith   PetscFunctionBegin;
40130793edcSSatish Balay   if (!barray) {
4029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
40382502324SSatish Balay     baij->barray = barray;
40430793edcSSatish Balay   }
40530793edcSSatish Balay 
40626fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
40726fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
40826fbe8dcSKarl Rupp 
409ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4105ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4116bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
412ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
413ab26458aSBarry Smith       row = im[i] - rstart;
414ab26458aSBarry Smith       for (j = 0; j < n; j++) {
41515b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
41615b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
417f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
41815b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
419f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
42015b57d14SSatish Balay         } else { /* Here a copy is required */
421ab26458aSBarry Smith           if (roworiented) {
42253ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
423ab26458aSBarry Smith           } else {
42453ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
425abef11f7SSatish Balay           }
42653ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
42726fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
42853ef36baSBarry Smith             barray += bs;
42947513183SBarry Smith           }
43030793edcSSatish Balay           barray -= bs2;
43115b57d14SSatish Balay         }
432abef11f7SSatish Balay 
433abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
434abef11f7SSatish Balay           col = in[j] - cstart;
4359566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
436f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
437f7d195e4SLawrence Mitchell           continue;
438f7d195e4SLawrence Mitchell         } else {
439f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
440ab26458aSBarry Smith           if (mat->was_assembled) {
44148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
442a5eb4965SSatish Balay 
4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
444aa482453SBarry Smith   #if defined(PETSC_USE_CTABLE)
4459371c9d4SSatish Balay             {
4469371c9d4SSatish Balay               PetscInt data;
447eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
44808401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
449fa46199cSSatish Balay             }
45048e59246SSatish Balay   #else
45108401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
452a5eb4965SSatish Balay   #endif
45348e59246SSatish Balay #endif
454aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
455eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
456fa46199cSSatish Balay             col = (col - 1) / bs;
45748e59246SSatish Balay #else
458a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1) / bs;
45948e59246SSatish Balay #endif
4600e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
4619566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
462ab26458aSBarry Smith               col = in[j];
4635f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
464db4deed7SKarl Rupp           } else col = in[j];
4659566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
466ab26458aSBarry Smith         }
467ab26458aSBarry Smith       }
468d64ed03dSBarry Smith     } else {
4695f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
470ab26458aSBarry Smith       if (!baij->donotstash) {
471ff2fd236SBarry Smith         if (roworiented) {
4729566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
473ff2fd236SBarry Smith         } else {
4749566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
475ff2fd236SBarry Smith         }
476abef11f7SSatish Balay       }
477ab26458aSBarry Smith     }
478ab26458aSBarry Smith   }
4793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480ab26458aSBarry Smith }
4816fa18ffdSBarry Smith 
4820bdbc534SSatish Balay #define HASH_KEY             0.6180339887
483b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
484b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
485b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
48666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
487d71ae5a4SJacob Faibussowitsch {
4880bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
489ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
490b24ad042SBarry Smith   PetscInt     i, j, row, col;
491d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
492d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
493d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
494329f5518SBarry Smith   PetscReal    tmp;
4953eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
496b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
4970bdbc534SSatish Balay 
4980bdbc534SSatish Balay   PetscFunctionBegin;
4990bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50076bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5015f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5025f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50376bd3646SJed Brown     }
5040bdbc534SSatish Balay     row = im[i];
505c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5060bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5070bdbc534SSatish Balay         col = in[j];
508db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
509db4deed7SKarl Rupp         else value = v[i + j * m];
510b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
511c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
512c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5130bdbc534SSatish Balay 
514c2760754SSatish Balay         idx = h1;
51576bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
516187ce0cbSSatish Balay           insert_ct++;
517187ce0cbSSatish Balay           total_ct++;
518187ce0cbSSatish Balay           if (HT[idx] != key) {
5199371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5209371c9d4SSatish Balay               ;
521187ce0cbSSatish Balay             if (idx == size) {
5229371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5239371c9d4SSatish Balay                 ;
5245f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
525187ce0cbSSatish Balay             }
526187ce0cbSSatish Balay           }
52776bd3646SJed Brown         } else if (HT[idx] != key) {
5289371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
5299371c9d4SSatish Balay             ;
530c2760754SSatish Balay           if (idx == size) {
5319371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
5329371c9d4SSatish Balay               ;
5335f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
534c2760754SSatish Balay           }
535c2760754SSatish Balay         }
536c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
537c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
538c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5390bdbc534SSatish Balay       }
54026fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
541ff2fd236SBarry Smith       if (roworiented) {
5429566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
543ff2fd236SBarry Smith       } else {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5450bdbc534SSatish Balay       }
5460bdbc534SSatish Balay     }
5470bdbc534SSatish Balay   }
54876bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
549abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
550abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55176bd3646SJed Brown   }
5523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5530bdbc534SSatish Balay }
5540bdbc534SSatish Balay 
55566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
556d71ae5a4SJacob Faibussowitsch {
5570bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
558ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
559b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
560899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
561d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
562b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
563329f5518SBarry Smith   PetscReal          tmp;
5643eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
565dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
566b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5670bdbc534SSatish Balay 
568d0a41580SSatish Balay   PetscFunctionBegin;
56926fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57026fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57126fbe8dcSKarl Rupp 
5720bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57376bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5745f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5755f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57676bd3646SJed Brown     }
5770bdbc534SSatish Balay     row = im[i];
578ab715e2cSSatish Balay     v_t = v + i * nbs2;
579c2760754SSatish Balay     if (row >= rstart && row < rend) {
5800bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5810bdbc534SSatish Balay         col = in[j];
5820bdbc534SSatish Balay 
5830bdbc534SSatish Balay         /* Look up into the Hash Table */
584c2760754SSatish Balay         key = row * Nbs + col + 1;
585c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5860bdbc534SSatish Balay 
587c2760754SSatish Balay         idx = h1;
58876bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
589187ce0cbSSatish Balay           total_ct++;
590187ce0cbSSatish Balay           insert_ct++;
591187ce0cbSSatish Balay           if (HT[idx] != key) {
5929371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5939371c9d4SSatish Balay               ;
594187ce0cbSSatish Balay             if (idx == size) {
5959371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5969371c9d4SSatish Balay                 ;
5975f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598187ce0cbSSatish Balay             }
599187ce0cbSSatish Balay           }
60076bd3646SJed Brown         } else if (HT[idx] != key) {
6019371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
6029371c9d4SSatish Balay             ;
603c2760754SSatish Balay           if (idx == size) {
6049371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
6059371c9d4SSatish Balay               ;
6065f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
607c2760754SSatish Balay           }
608c2760754SSatish Balay         }
609c2760754SSatish Balay         baij_a = HD[idx];
6100bdbc534SSatish Balay         if (roworiented) {
611c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
612187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
613187ce0cbSSatish Balay           value = v_t;
614187ce0cbSSatish Balay           v_t += bs;
615fef45726SSatish Balay           if (addv == ADD_VALUES) {
616c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
617ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
618b4cc0f5aSSatish Balay             }
619fef45726SSatish Balay           } else {
620c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
621ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
622fef45726SSatish Balay             }
623fef45726SSatish Balay           }
6240bdbc534SSatish Balay         } else {
6250bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
626fef45726SSatish Balay           if (addv == ADD_VALUES) {
627b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
628ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
629fef45726SSatish Balay             }
630fef45726SSatish Balay           } else {
631fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
632ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
633b4cc0f5aSSatish Balay             }
6340bdbc534SSatish Balay           }
6350bdbc534SSatish Balay         }
6360bdbc534SSatish Balay       }
6370bdbc534SSatish Balay     } else {
6380bdbc534SSatish Balay       if (!baij->donotstash) {
6390bdbc534SSatish Balay         if (roworiented) {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410bdbc534SSatish Balay         } else {
6429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430bdbc534SSatish Balay         }
6440bdbc534SSatish Balay       }
6450bdbc534SSatish Balay     }
6460bdbc534SSatish Balay   }
64776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
648abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
649abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
65076bd3646SJed Brown   }
6513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6520bdbc534SSatish Balay }
653133cdb44SSatish Balay 
65466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
655d71ae5a4SJacob Faibussowitsch {
656d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
657d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
658d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
659d6de1c52SSatish Balay 
660133cdb44SSatish Balay   PetscFunctionBegin;
661d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66254c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66354c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
664d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
665d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
666d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
66754c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66854c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
669d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
670d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6719566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
672d64ed03dSBarry Smith         } else {
67348a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
674aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
675eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
676fa46199cSSatish Balay           data--;
67748e59246SSatish Balay #else
67848e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
67948e59246SSatish Balay #endif
68048e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
681d9d09a02SSatish Balay           else {
68248e59246SSatish Balay             col = data + idxn[j] % bs;
6839566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
684d6de1c52SSatish Balay           }
685d6de1c52SSatish Balay         }
686d6de1c52SSatish Balay       }
687f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
688d6de1c52SSatish Balay   }
6893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
690d6de1c52SSatish Balay }
691d6de1c52SSatish Balay 
69266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
693d71ae5a4SJacob Faibussowitsch {
694d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
695d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
696d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
697329f5518SBarry Smith   PetscReal    sum = 0.0;
6983eda8832SBarry Smith   MatScalar   *v;
699d6de1c52SSatish Balay 
700d64ed03dSBarry Smith   PetscFunctionBegin;
701d6de1c52SSatish Balay   if (baij->size == 1) {
7029566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
703d6de1c52SSatish Balay   } else {
704d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
705d6de1c52SSatish Balay       v  = amat->a;
7068a62d963SHong Zhang       nz = amat->nz * bs2;
7078a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7089371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7099371c9d4SSatish Balay         v++;
710d6de1c52SSatish Balay       }
711d6de1c52SSatish Balay       v  = bmat->a;
7128a62d963SHong Zhang       nz = bmat->nz * bs2;
7138a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7149371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7159371c9d4SSatish Balay         v++;
716d6de1c52SSatish Balay       }
7171c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7188f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7198a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7208a62d963SHong Zhang       PetscReal *tmp, *tmp2;
721899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7229566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7249371c9d4SSatish Balay       v  = amat->a;
7259371c9d4SSatish Balay       jj = amat->j;
7268a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7278a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7288a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7298a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7309371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7319371c9d4SSatish Balay             v++;
7328a62d963SHong Zhang           }
7338a62d963SHong Zhang         }
7348a62d963SHong Zhang         jj++;
7358a62d963SHong Zhang       }
7369371c9d4SSatish Balay       v  = bmat->a;
7379371c9d4SSatish Balay       jj = bmat->j;
7388a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7398a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7408a62d963SHong Zhang           col = bs * garray[*jj] + j;
7418a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7429371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7439371c9d4SSatish Balay             v++;
7448a62d963SHong Zhang           }
7458a62d963SHong Zhang         }
7468a62d963SHong Zhang         jj++;
7478a62d963SHong Zhang       }
7481c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7498a62d963SHong Zhang       *nrm = 0.0;
750d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7518a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7528a62d963SHong Zhang       }
7539566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7549566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7558a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
756577dd1f9SKris Buschelman       PetscReal *sums;
7579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7588a62d963SHong Zhang       sum = 0.0;
7598a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7608a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7618a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7628a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7638a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7648a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7658a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7669371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7679371c9d4SSatish Balay               v++;
7688a62d963SHong Zhang             }
7698a62d963SHong Zhang           }
7708a62d963SHong Zhang         }
7718a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7728a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7738a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7748a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7758a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7769371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7779371c9d4SSatish Balay               v++;
7788a62d963SHong Zhang             }
7798a62d963SHong Zhang           }
7808a62d963SHong Zhang         }
7818a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7828a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7838a62d963SHong Zhang         }
7848a62d963SHong Zhang       }
7851c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7869566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
787ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
788d64ed03dSBarry Smith   }
7893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
790d6de1c52SSatish Balay }
79157b952d6SSatish Balay 
792fef45726SSatish Balay /*
793fef45726SSatish Balay   Creates the hash table, and sets the table
794fef45726SSatish Balay   This table is created only once.
795fef45726SSatish Balay   If new entried need to be added to the matrix
796fef45726SSatish Balay   then the hash table has to be destroyed and
797fef45726SSatish Balay   recreated.
798fef45726SSatish Balay */
79966976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
800d71ae5a4SJacob Faibussowitsch {
801596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
802596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
803596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
804b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
805fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
806899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
807b24ad042SBarry Smith   PetscInt    *HT, key;
8083eda8832SBarry Smith   MatScalar  **HD;
809329f5518SBarry Smith   PetscReal    tmp;
8106cf91177SBarry Smith #if defined(PETSC_USE_INFO)
811b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8124a15367fSSatish Balay #endif
813fef45726SSatish Balay 
814d64ed03dSBarry Smith   PetscFunctionBegin;
8153ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
816fef45726SSatish Balay 
817fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
818fca92195SBarry Smith   ht_size       = baij->ht_size;
8190bdbc534SSatish Balay 
820fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8219566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
822b9e4cc15SSatish Balay   HD = baij->hd;
823a07cd24cSSatish Balay   HT = baij->ht;
824b9e4cc15SSatish Balay 
825596b8d2eSBarry Smith   /* Loop Over A */
8260bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
827596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8280bdbc534SSatish Balay       row = i + rstart;
8290bdbc534SSatish Balay       col = aj[j] + cstart;
830596b8d2eSBarry Smith 
831187ce0cbSSatish Balay       key = row * Nbs + col + 1;
832fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
833fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
834fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
835fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
836fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
837596b8d2eSBarry Smith           break;
8386cf91177SBarry Smith #if defined(PETSC_USE_INFO)
839187ce0cbSSatish Balay         } else {
840187ce0cbSSatish Balay           ct++;
841187ce0cbSSatish Balay #endif
842596b8d2eSBarry Smith         }
843187ce0cbSSatish Balay       }
8446cf91177SBarry Smith #if defined(PETSC_USE_INFO)
845187ce0cbSSatish Balay       if (k > max) max = k;
846187ce0cbSSatish Balay #endif
847596b8d2eSBarry Smith     }
848596b8d2eSBarry Smith   }
849596b8d2eSBarry Smith   /* Loop Over B */
8500bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
851596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8520bdbc534SSatish Balay       row = i + rstart;
8530bdbc534SSatish Balay       col = garray[bj[j]];
854187ce0cbSSatish Balay       key = row * Nbs + col + 1;
855fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
856fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
857fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
858fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
859fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
860596b8d2eSBarry Smith           break;
8616cf91177SBarry Smith #if defined(PETSC_USE_INFO)
862187ce0cbSSatish Balay         } else {
863187ce0cbSSatish Balay           ct++;
864187ce0cbSSatish Balay #endif
865596b8d2eSBarry Smith         }
866187ce0cbSSatish Balay       }
8676cf91177SBarry Smith #if defined(PETSC_USE_INFO)
868187ce0cbSSatish Balay       if (k > max) max = k;
869187ce0cbSSatish Balay #endif
870596b8d2eSBarry Smith     }
871596b8d2eSBarry Smith   }
872596b8d2eSBarry Smith 
873596b8d2eSBarry Smith   /* Print Summary */
8746cf91177SBarry Smith #if defined(PETSC_USE_INFO)
875fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87626fbe8dcSKarl Rupp     if (HT[i]) j++;
877c38d4ed2SBarry Smith   }
8789566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
879187ce0cbSSatish Balay #endif
8803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
881596b8d2eSBarry Smith }
88257b952d6SSatish Balay 
88366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
884d71ae5a4SJacob Faibussowitsch {
885bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
886b24ad042SBarry Smith   PetscInt     nstash, reallocs;
887bbb85fb3SSatish Balay 
888bbb85fb3SSatish Balay   PetscFunctionBegin;
8893ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
890bbb85fb3SSatish Balay 
8919566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8939566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8949566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8959566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8969566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
898bbb85fb3SSatish Balay }
899bbb85fb3SSatish Balay 
90066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
901d71ae5a4SJacob Faibussowitsch {
902bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90391c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
904b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
905e44c0bd4SBarry Smith   PetscInt    *row, *col;
906ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9073eda8832SBarry Smith   MatScalar   *val;
908b24ad042SBarry Smith   PetscMPIInt  n;
909bbb85fb3SSatish Balay 
910bbb85fb3SSatish Balay   PetscFunctionBegin;
9115fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9124cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
913a2d1c673SSatish Balay     while (1) {
9149566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
915a2d1c673SSatish Balay       if (!flg) break;
916a2d1c673SSatish Balay 
917bbb85fb3SSatish Balay       for (i = 0; i < n;) {
918bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
91926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92126fbe8dcSKarl Rupp         }
922bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
923bbb85fb3SSatish Balay         else ncols = n - i;
924bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9259566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
926bbb85fb3SSatish Balay         i = j;
927bbb85fb3SSatish Balay       }
928bbb85fb3SSatish Balay     }
9299566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
930a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
931a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
932a2d1c673SSatish Balay        restore the original flags */
933a2d1c673SSatish Balay     r1 = baij->roworiented;
934a2d1c673SSatish Balay     r2 = a->roworiented;
93591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93626fbe8dcSKarl Rupp 
9377c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
9387c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
93926fbe8dcSKarl Rupp 
94091c97fd4SSatish Balay     (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
941a2d1c673SSatish Balay     while (1) {
9429566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
943a2d1c673SSatish Balay       if (!flg) break;
944a2d1c673SSatish Balay 
945a2d1c673SSatish Balay       for (i = 0; i < n;) {
946a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94726fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
94826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94926fbe8dcSKarl Rupp         }
950a2d1c673SSatish Balay         if (j < n) ncols = j - i;
951a2d1c673SSatish Balay         else ncols = n - i;
9529566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
953a2d1c673SSatish Balay         i = j;
954a2d1c673SSatish Balay       }
955a2d1c673SSatish Balay     }
9569566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95726fbe8dcSKarl Rupp 
958a2d1c673SSatish Balay     baij->roworiented = r1;
959a2d1c673SSatish Balay     a->roworiented    = r2;
96026fbe8dcSKarl Rupp 
96191c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
962bbb85fb3SSatish Balay   }
963bbb85fb3SSatish Balay 
9649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
966bbb85fb3SSatish Balay 
967bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9686aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
969bbb85fb3SSatish Balay   /*
970bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
971bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
972bbb85fb3SSatish Balay   */
973bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9745f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
97548a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
976bbb85fb3SSatish Balay   }
977bbb85fb3SSatish Balay 
97848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
981bbb85fb3SSatish Balay 
9826cf91177SBarry Smith #if defined(PETSC_USE_INFO)
983bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9849566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98526fbe8dcSKarl Rupp 
986bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
987bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
988bbb85fb3SSatish Balay   }
989bbb85fb3SSatish Balay #endif
990bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9919566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99226fbe8dcSKarl Rupp 
993bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
994bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
995bbb85fb3SSatish Balay   }
996bbb85fb3SSatish Balay 
9979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
99826fbe8dcSKarl Rupp 
999f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
10004f9cfa9eSBarry Smith 
10014f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
10024f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
1003e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
10041c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1005e56f5c9eSBarry Smith   }
10063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1007bbb85fb3SSatish Balay }
100857b952d6SSatish Balay 
10097da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10109804daf3SBarry Smith #include <petscdraw.h>
1011d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1012d71ae5a4SJacob Faibussowitsch {
101357b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10147da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1015d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1016ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1017b0a32e0cSBarry Smith   PetscViewer       sviewer;
1018f3ef73ceSBarry Smith   PetscViewerFormat format;
101957b952d6SSatish Balay 
1020d64ed03dSBarry Smith   PetscFunctionBegin;
10219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10229566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
102332077d6dSBarry Smith   if (iascii) {
10249566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1025456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10264e220ebcSLois Curfman McInnes       MatInfo info;
10279566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10289566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10299566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10309371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10319371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10329566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10339566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10349566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10369566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10379566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10389566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10399566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10403ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1041fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10429566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10433ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104404929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10453ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104657b952d6SSatish Balay     }
104757b952d6SSatish Balay   }
104857b952d6SSatish Balay 
10490f5bd95cSBarry Smith   if (isdraw) {
1050b0a32e0cSBarry Smith     PetscDraw draw;
1051ace3abfcSBarry Smith     PetscBool isnull;
10529566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10539566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10543ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
105557b952d6SSatish Balay   }
105657b952d6SSatish Balay 
10577da1fb6eSBarry Smith   {
105857b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
105957b952d6SSatish Balay     Mat          A;
106057b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1061d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10623eda8832SBarry Smith     MatScalar   *a;
10633e219373SBarry Smith     const char  *matname;
106457b952d6SSatish Balay 
1065f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1066f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10679566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1068dd400576SPatrick Sanan     if (rank == 0) {
10699566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1070d64ed03dSBarry Smith     } else {
10719566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
107257b952d6SSatish Balay     }
10739566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10749566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
107657b952d6SSatish Balay 
107757b952d6SSatish Balay     /* copy over the A part */
107857b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10799371c9d4SSatish Balay     ai   = Aloc->i;
10809371c9d4SSatish Balay     aj   = Aloc->j;
10819371c9d4SSatish Balay     a    = Aloc->a;
10829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
108357b952d6SSatish Balay 
108457b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1085899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108626fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108757b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1088899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
108957b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10909566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10919371c9d4SSatish Balay           col++;
10929371c9d4SSatish Balay           a += bs;
109357b952d6SSatish Balay         }
109457b952d6SSatish Balay       }
109557b952d6SSatish Balay     }
109657b952d6SSatish Balay     /* copy over the B part */
109757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10989371c9d4SSatish Balay     ai   = Aloc->i;
10999371c9d4SSatish Balay     aj   = Aloc->j;
11009371c9d4SSatish Balay     a    = Aloc->a;
110157b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1102899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
110326fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
110457b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
110557b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
110657b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11079566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11089371c9d4SSatish Balay           col++;
11099371c9d4SSatish Balay           a += bs;
111057b952d6SSatish Balay         }
111157b952d6SSatish Balay       }
111257b952d6SSatish Balay     }
11139566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11149566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11159566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
111655843e3eSBarry Smith     /*
111755843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1118b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
111955843e3eSBarry Smith     */
11209566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
112123a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1122dd400576SPatrick Sanan     if (rank == 0) {
112323a3927dSBarry Smith       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname));
11249566063dSJacob Faibussowitsch       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer));
112557b952d6SSatish Balay     }
11269566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11279566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
11289566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
112957b952d6SSatish Balay   }
11303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
113157b952d6SSatish Balay }
113257b952d6SSatish Balay 
1133618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1134d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1135d71ae5a4SJacob Faibussowitsch {
1136b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1137b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1138b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1139b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
114017a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
114117a3732bSBarry Smith   PetscInt64      nz, hnz;
1142b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1143b51a4376SLisandro Dalcin   PetscScalar    *matvals;
114417a3732bSBarry Smith   PetscMPIInt     rank;
1145660746e0SBarry Smith 
1146660746e0SBarry Smith   PetscFunctionBegin;
11479566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1148b51a4376SLisandro Dalcin 
1149b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1150b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1151b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1152b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1153b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1154b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1155b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1156b51a4376SLisandro Dalcin 
1157b51a4376SLisandro Dalcin   /* write matrix header */
1158660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11599371c9d4SSatish Balay   header[1] = M;
11609371c9d4SSatish Balay   header[2] = N;
116117a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
116217a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
116317a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11649566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1165660746e0SBarry Smith 
1166b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1168b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11699371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11709566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11719566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1172660746e0SBarry Smith 
1173b51a4376SLisandro Dalcin   /* fill in and store column indices */
11749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1175b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1176b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1177b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1178b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11799371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1180660746e0SBarry Smith       }
1181b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11829371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1183b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11849371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1185660746e0SBarry Smith     }
1186660746e0SBarry Smith   }
118717a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
11889566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11899566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1190660746e0SBarry Smith 
1191b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1193b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1194b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1195b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1196b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11979371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1198660746e0SBarry Smith       }
1199b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
12009371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1201b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
12029371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1203660746e0SBarry Smith     }
1204b51a4376SLisandro Dalcin   }
12059566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12069566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1207660746e0SBarry Smith 
1208b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12099566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1211660746e0SBarry Smith }
1212660746e0SBarry Smith 
1213d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1214d71ae5a4SJacob Faibussowitsch {
1215ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
121657b952d6SSatish Balay 
1217d64ed03dSBarry Smith   PetscFunctionBegin;
12189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1222660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12239566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12241baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122657b952d6SSatish Balay }
122757b952d6SSatish Balay 
122866976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1229d71ae5a4SJacob Faibussowitsch {
1230cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1231b24ad042SBarry Smith   PetscInt     nt;
1232cee3aa6bSSatish Balay 
1233d64ed03dSBarry Smith   PetscFunctionBegin;
12349566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12355f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12369566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1237da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12389566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12399566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12409566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12419566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1243cee3aa6bSSatish Balay }
1244cee3aa6bSSatish Balay 
124566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1246d71ae5a4SJacob Faibussowitsch {
1247cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1248d64ed03dSBarry Smith 
1249d64ed03dSBarry Smith   PetscFunctionBegin;
12509566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12519566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12529566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12539566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1255cee3aa6bSSatish Balay }
1256cee3aa6bSSatish Balay 
125766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1258d71ae5a4SJacob Faibussowitsch {
1259cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1260cee3aa6bSSatish Balay 
1261d64ed03dSBarry Smith   PetscFunctionBegin;
1262cee3aa6bSSatish Balay   /* do nondiagonal part */
12639566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1264cee3aa6bSSatish Balay   /* do local part */
12659566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1266e4a140f6SJunchao Zhang   /* add partial results together */
12679566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12689566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1270cee3aa6bSSatish Balay }
1271cee3aa6bSSatish Balay 
127266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1273d71ae5a4SJacob Faibussowitsch {
1274cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1275cee3aa6bSSatish Balay 
1276d64ed03dSBarry Smith   PetscFunctionBegin;
1277cee3aa6bSSatish Balay   /* do nondiagonal part */
12789566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1279cee3aa6bSSatish Balay   /* do local part */
12809566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1281e4a140f6SJunchao Zhang   /* add partial results together */
12829566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12839566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1285cee3aa6bSSatish Balay }
1286cee3aa6bSSatish Balay 
1287cee3aa6bSSatish Balay /*
1288cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1289cee3aa6bSSatish Balay    diagonal block
1290cee3aa6bSSatish Balay */
129166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1292d71ae5a4SJacob Faibussowitsch {
1293d64ed03dSBarry Smith   PetscFunctionBegin;
12945f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12959566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1297cee3aa6bSSatish Balay }
1298cee3aa6bSSatish Balay 
129966976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1300d71ae5a4SJacob Faibussowitsch {
1301cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1302d64ed03dSBarry Smith 
1303d64ed03dSBarry Smith   PetscFunctionBegin;
13049566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
13059566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1307cee3aa6bSSatish Balay }
1308026e39d0SSatish Balay 
1309d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1310d71ae5a4SJacob Faibussowitsch {
1311acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
131287828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1313d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1314d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1315899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1316acdf5bf4SSatish Balay 
1317d64ed03dSBarry Smith   PetscFunctionBegin;
13185f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13195f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1320acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1321acdf5bf4SSatish Balay 
1322acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1323acdf5bf4SSatish Balay     /*
1324acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1325acdf5bf4SSatish Balay     */
1326acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1327b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1328bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1329acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
133026fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1331acdf5bf4SSatish Balay     }
13329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1333acdf5bf4SSatish Balay   }
1334d9d09a02SSatish Balay   lrow = row - brstart;
1335acdf5bf4SSatish Balay 
13369371c9d4SSatish Balay   pvA = &vworkA;
13379371c9d4SSatish Balay   pcA = &cworkA;
13389371c9d4SSatish Balay   pvB = &vworkB;
13399371c9d4SSatish Balay   pcB = &cworkB;
13409371c9d4SSatish Balay   if (!v) {
13419371c9d4SSatish Balay     pvA = NULL;
13429371c9d4SSatish Balay     pvB = NULL;
13439371c9d4SSatish Balay   }
13449371c9d4SSatish Balay   if (!idx) {
13459371c9d4SSatish Balay     pcA = NULL;
13469371c9d4SSatish Balay     if (!v) pcB = NULL;
13479371c9d4SSatish Balay   }
13489566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13499566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1350acdf5bf4SSatish Balay   nztot = nzA + nzB;
1351acdf5bf4SSatish Balay 
1352acdf5bf4SSatish Balay   cmap = mat->garray;
1353acdf5bf4SSatish Balay   if (v || idx) {
1354acdf5bf4SSatish Balay     if (nztot) {
1355acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1356b24ad042SBarry Smith       PetscInt imark = -1;
1357acdf5bf4SSatish Balay       if (v) {
1358acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1359acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1360d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1361acdf5bf4SSatish Balay           else break;
1362acdf5bf4SSatish Balay         }
1363acdf5bf4SSatish Balay         imark = i;
1364acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1365acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1366acdf5bf4SSatish Balay       }
1367acdf5bf4SSatish Balay       if (idx) {
1368acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1369acdf5bf4SSatish Balay         if (imark > -1) {
1370ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1371acdf5bf4SSatish Balay         } else {
1372acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
137326fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1374acdf5bf4SSatish Balay             else break;
1375acdf5bf4SSatish Balay           }
1376acdf5bf4SSatish Balay           imark = i;
1377acdf5bf4SSatish Balay         }
1378d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1379d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1380acdf5bf4SSatish Balay       }
1381d64ed03dSBarry Smith     } else {
1382f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1383f4259b30SLisandro Dalcin       if (v) *v = NULL;
1384d212a18eSSatish Balay     }
1385acdf5bf4SSatish Balay   }
1386acdf5bf4SSatish Balay   *nz = nztot;
13879566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13889566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1390acdf5bf4SSatish Balay }
1391acdf5bf4SSatish Balay 
1392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1393d71ae5a4SJacob Faibussowitsch {
1394acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1395d64ed03dSBarry Smith 
1396d64ed03dSBarry Smith   PetscFunctionBegin;
13975f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1398acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1400acdf5bf4SSatish Balay }
1401acdf5bf4SSatish Balay 
140266976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1403d71ae5a4SJacob Faibussowitsch {
140458667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1405d64ed03dSBarry Smith 
1406d64ed03dSBarry Smith   PetscFunctionBegin;
14079566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14089566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
141058667388SSatish Balay }
14110ac07820SSatish Balay 
141266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1413d71ae5a4SJacob Faibussowitsch {
14144e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14154e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14163966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14170ac07820SSatish Balay 
1418d64ed03dSBarry Smith   PetscFunctionBegin;
1419d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142026fbe8dcSKarl Rupp 
14219566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
142226fbe8dcSKarl Rupp 
14239371c9d4SSatish Balay   isend[0] = info->nz_used;
14249371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14259371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14269371c9d4SSatish Balay   isend[3] = info->memory;
14279371c9d4SSatish Balay   isend[4] = info->mallocs;
142826fbe8dcSKarl Rupp 
14299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
143026fbe8dcSKarl Rupp 
14319371c9d4SSatish Balay   isend[0] += info->nz_used;
14329371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14339371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14349371c9d4SSatish Balay   isend[3] += info->memory;
14359371c9d4SSatish Balay   isend[4] += info->mallocs;
143626fbe8dcSKarl Rupp 
14370ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14384e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14394e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14404e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14414e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14424e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14430ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14441c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
144526fbe8dcSKarl Rupp 
14464e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14474e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14484e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14494e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14504e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14510ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14521c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
145326fbe8dcSKarl Rupp 
14544e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14554e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14564e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14574e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14584e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
145998921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14604e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14614e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14624e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14640ac07820SSatish Balay }
14650ac07820SSatish Balay 
146666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1467d71ae5a4SJacob Faibussowitsch {
146858667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
146958667388SSatish Balay 
1470d64ed03dSBarry Smith   PetscFunctionBegin;
147112c028f9SKris Buschelman   switch (op) {
1472512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1475a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
147612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147743674050SBarry Smith     MatCheckPreallocated(A, 1);
14789566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148012c028f9SKris Buschelman     break;
148112c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
148243674050SBarry Smith     MatCheckPreallocated(A, 1);
14834e0d8c25SBarry Smith     a->roworiented = flg;
148426fbe8dcSKarl Rupp 
14859566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148712c028f9SKris Buschelman     break;
14888c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1489d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1490d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1491d71ae5a4SJacob Faibussowitsch     break;
1492d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1493d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1494d71ae5a4SJacob Faibussowitsch     break;
149512c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14964e0d8c25SBarry Smith     a->ht_flag = flg;
1497abf3b562SBarry Smith     a->ht_fact = 1.39;
149812c028f9SKris Buschelman     break;
149977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
150077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15012188ac68SBarry Smith   case MAT_HERMITIAN:
1502c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15032188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1504b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1505b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1506b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
150777e54ba9SKris Buschelman     break;
1508d71ae5a4SJacob Faibussowitsch   default:
1509d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1510d64ed03dSBarry Smith   }
15113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151258667388SSatish Balay }
151358667388SSatish Balay 
151466976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1515d71ae5a4SJacob Faibussowitsch {
15160ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15170ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15180ac07820SSatish Balay   Mat          B;
1519d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1520d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15213eda8832SBarry Smith   MatScalar   *a;
15220ac07820SSatish Balay 
1523d64ed03dSBarry Smith   PetscFunctionBegin;
15247fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1525cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15269566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15279566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15289566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15292e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15309566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1531fc4dec0aSBarry Smith   } else {
1532fc4dec0aSBarry Smith     B = *matout;
1533fc4dec0aSBarry Smith   }
15340ac07820SSatish Balay 
15350ac07820SSatish Balay   /* copy over the A part */
15360ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15379371c9d4SSatish Balay   ai   = Aloc->i;
15389371c9d4SSatish Balay   aj   = Aloc->j;
15399371c9d4SSatish Balay   a    = Aloc->a;
15409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15410ac07820SSatish Balay 
15420ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1543899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154426fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15450ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1546899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15470ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15489566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
154926fbe8dcSKarl Rupp 
15509371c9d4SSatish Balay         col++;
15519371c9d4SSatish Balay         a += bs;
15520ac07820SSatish Balay       }
15530ac07820SSatish Balay     }
15540ac07820SSatish Balay   }
15550ac07820SSatish Balay   /* copy over the B part */
15560ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15579371c9d4SSatish Balay   ai   = Aloc->i;
15589371c9d4SSatish Balay   aj   = Aloc->j;
15599371c9d4SSatish Balay   a    = Aloc->a;
15600ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1561899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
156226fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15630ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15640ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15650ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15669566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
156726fbe8dcSKarl Rupp         col++;
156826fbe8dcSKarl Rupp         a += bs;
15690ac07820SSatish Balay       }
15700ac07820SSatish Balay     }
15710ac07820SSatish Balay   }
15729566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15750ac07820SSatish Balay 
1576cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
157748a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15790ac07820SSatish Balay }
15800e95ebc0SSatish Balay 
158166976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1582d71ae5a4SJacob Faibussowitsch {
158336c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
158436c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1585b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15860e95ebc0SSatish Balay 
1587d64ed03dSBarry Smith   PetscFunctionBegin;
15889566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
158936c4a09eSSatish Balay   if (rr) {
15909566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15915f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
159236c4a09eSSatish Balay     /* Overlap communication with computation. */
15939566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
159436c4a09eSSatish Balay   }
15950e95ebc0SSatish Balay   if (ll) {
15969566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15975f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1598dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15990e95ebc0SSatish Balay   }
160036c4a09eSSatish Balay   /* scale  the diagonal block */
1601dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
160236c4a09eSSatish Balay 
160336c4a09eSSatish Balay   if (rr) {
160436c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
16059566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1606dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
160736c4a09eSSatish Balay   }
16083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16090e95ebc0SSatish Balay }
16100e95ebc0SSatish Balay 
161166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1612d71ae5a4SJacob Faibussowitsch {
16130ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
161465a92638SMatthew G. Knepley   PetscInt    *lrows;
16156e520ac8SStefano Zampini   PetscInt     r, len;
161694342113SStefano Zampini   PetscBool    cong;
16170ac07820SSatish Balay 
1618d64ed03dSBarry Smith   PetscFunctionBegin;
16196e520ac8SStefano Zampini   /* get locally owned rows */
16209566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
162197b48c8fSBarry Smith   /* fix right hand side if needed */
162297b48c8fSBarry Smith   if (x && b) {
162365a92638SMatthew G. Knepley     const PetscScalar *xx;
162465a92638SMatthew G. Knepley     PetscScalar       *bb;
162565a92638SMatthew G. Knepley 
16269566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16279566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
162865a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16299566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16309566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
163197b48c8fSBarry Smith   }
163297b48c8fSBarry Smith 
16330ac07820SSatish Balay   /* actually zap the local rows */
163472dacd9aSBarry Smith   /*
163572dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1636a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
163772dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
163872dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
163972dacd9aSBarry Smith 
164072dacd9aSBarry Smith   */
16419c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16429566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16439566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
164494342113SStefano Zampini   if ((diag != 0.0) && cong) {
16459566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1646f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16479566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
16485f80ce2aSJacob Faibussowitsch     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1649512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
165065a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
165165a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16529566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1653a07cd24cSSatish Balay     }
16549566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16559566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16569c957beeSSatish Balay   } else {
16579566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1658a07cd24cSSatish Balay   }
16599566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16604f9cfa9eSBarry Smith 
16614f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16624f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
1663e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16641c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1665e56f5c9eSBarry Smith   }
16663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16670ac07820SSatish Balay }
166872dacd9aSBarry Smith 
166966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1670d71ae5a4SJacob Faibussowitsch {
16716f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1672131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1673131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16746f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16756f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16766f0a72daSMatthew G. Knepley   PetscSF            sf;
16776f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16786f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16796f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16806f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16816f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16826f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16836f0a72daSMatthew G. Knepley 
16846f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16856f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16876f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16896f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16906f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16915f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16925ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16939566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16945ba17502SJed Brown     }
16956f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16966f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16976f0a72daSMatthew G. Knepley   }
16989566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16999566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
17006f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17019566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17029566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17039566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
17046f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17059371c9d4SSatish Balay   for (r = 0; r < n; ++r)
17069371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
17076f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17089566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
17096f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
17109566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17119566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17129566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17136f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17149566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17159566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17169566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17186f0a72daSMatthew G. Knepley   if (x) {
17199566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17209566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17219566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17229566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17236f0a72daSMatthew G. Knepley   }
17249566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17256f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17266f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17276f0a72daSMatthew G. Knepley     row   = lrows[i];
17286f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
17296f0a72daSMatthew G. Knepley     aa    = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs);
17306f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17316f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17326f0a72daSMatthew G. Knepley       aa += bs;
17336f0a72daSMatthew G. Knepley     }
17346f0a72daSMatthew G. Knepley   }
17356f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17366f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17376f0a72daSMatthew G. Knepley     row = i / bs;
17386f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17396f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17406f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17416f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17426f0a72daSMatthew G. Knepley           aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k;
174389ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17446f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17456f0a72daSMatthew G. Knepley         }
17466f0a72daSMatthew G. Knepley       }
17476f0a72daSMatthew G. Knepley     }
17486f0a72daSMatthew G. Knepley   }
17496f0a72daSMatthew G. Knepley   if (x) {
17509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17519566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17526f0a72daSMatthew G. Knepley   }
17539566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17559566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17564f9cfa9eSBarry Smith 
17574f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17584f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
17594f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17601c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17614f9cfa9eSBarry Smith   }
17623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17636f0a72daSMatthew G. Knepley }
17646f0a72daSMatthew G. Knepley 
176566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1766d71ae5a4SJacob Faibussowitsch {
1767bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1768d64ed03dSBarry Smith 
1769d64ed03dSBarry Smith   PetscFunctionBegin;
17709566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1772bb5a7306SBarry Smith }
1773bb5a7306SBarry Smith 
17746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17750ac07820SSatish Balay 
177666976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1777d71ae5a4SJacob Faibussowitsch {
17787fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17797fc3c18eSBarry Smith   Mat          a, b, c, d;
1780ace3abfcSBarry Smith   PetscBool    flg;
17817fc3c18eSBarry Smith 
17827fc3c18eSBarry Smith   PetscFunctionBegin;
17839371c9d4SSatish Balay   a = matA->A;
17849371c9d4SSatish Balay   b = matA->B;
17859371c9d4SSatish Balay   c = matB->A;
17869371c9d4SSatish Balay   d = matB->B;
17877fc3c18eSBarry Smith 
17889566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
178948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17901c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17927fc3c18eSBarry Smith }
17937fc3c18eSBarry Smith 
179466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1795d71ae5a4SJacob Faibussowitsch {
17963c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17973c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17983c896bc6SHong Zhang 
17993c896bc6SHong Zhang   PetscFunctionBegin;
18003c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18013c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18029566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
18033c896bc6SHong Zhang   } else {
18049566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
18059566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
18063c896bc6SHong Zhang   }
18079566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
18083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18093c896bc6SHong Zhang }
1810273d9f13SBarry Smith 
1811d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1812d71ae5a4SJacob Faibussowitsch {
1813001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18144de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18154de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18164de5dceeSHong Zhang 
18174de5dceeSHong Zhang   PetscFunctionBegin;
18189566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18204de5dceeSHong Zhang }
18214de5dceeSHong Zhang 
182266976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1823d71ae5a4SJacob Faibussowitsch {
18244fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18254fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18264fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1827b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18284fe895cdSHong Zhang 
18294fe895cdSHong Zhang   PetscFunctionBegin;
18304fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18314fe895cdSHong Zhang     PetscScalar alpha = a;
18324fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18334fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18349566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1835792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18364fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18374fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18389566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1839792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18409566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1841ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18429566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18434fe895cdSHong Zhang   } else {
18444de5dceeSHong Zhang     Mat       B;
18454de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18489566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18499566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18509566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18519566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18529566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18539566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18549566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18559566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18564de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18579566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18589566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18599566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18609566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18614fe895cdSHong Zhang   }
18623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18634fe895cdSHong Zhang }
18644fe895cdSHong Zhang 
186566976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1866d71ae5a4SJacob Faibussowitsch {
18675f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18685f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18692726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18702726fb6dSPierre Jolivet 
18719566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18729566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18735f80ce2aSJacob Faibussowitsch   }
18743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18752726fb6dSPierre Jolivet }
18762726fb6dSPierre Jolivet 
187766976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1878d71ae5a4SJacob Faibussowitsch {
187999cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188099cafbc1SBarry Smith 
188199cafbc1SBarry Smith   PetscFunctionBegin;
18829566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18839566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188599cafbc1SBarry Smith }
188699cafbc1SBarry Smith 
188766976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1888d71ae5a4SJacob Faibussowitsch {
188999cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
189099cafbc1SBarry Smith 
189199cafbc1SBarry Smith   PetscFunctionBegin;
18929566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18939566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189599cafbc1SBarry Smith }
189699cafbc1SBarry Smith 
189766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1898d71ae5a4SJacob Faibussowitsch {
18994aa3045dSJed Brown   IS       iscol_local;
19004aa3045dSJed Brown   PetscInt csize;
19014aa3045dSJed Brown 
19024aa3045dSJed Brown   PetscFunctionBegin;
19039566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1904b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
19059566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
19065f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1907b79d0421SJed Brown   } else {
19089566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1909b79d0421SJed Brown   }
1910*fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1911b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19129566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19139566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1914b79d0421SJed Brown   }
19153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19164aa3045dSJed Brown }
191717df9f7cSHong Zhang 
191882094794SBarry Smith /*
191982094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
192082094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19217dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19228f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
192382094794SBarry Smith */
1924*fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1925d71ae5a4SJacob Faibussowitsch {
192682094794SBarry Smith   PetscMPIInt  rank, size;
192782094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1928c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
192929dcf524SDmitry Karpeev   Mat          M, Mreuse;
193082094794SBarry Smith   MatScalar   *vwork, *aa;
1931ce94432eSBarry Smith   MPI_Comm     comm;
193229dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
193382094794SBarry Smith   Mat_SeqBAIJ *aij;
193482094794SBarry Smith 
193582094794SBarry Smith   PetscFunctionBegin;
19369566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
193929dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
194029dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19419566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1942864bd19bSPierre Jolivet   if (isrow == iscol) {
1943864bd19bSPierre Jolivet     iscol_new = isrow_new;
1944864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1945864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
194682094794SBarry Smith 
194782094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19489566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19495f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1950*fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
195182094794SBarry Smith   } else {
1952*fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
195382094794SBarry Smith   }
19549566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19559566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
195682094794SBarry Smith   /*
195782094794SBarry Smith       m - number of local rows
195882094794SBarry Smith       n - number of columns (same on all processors)
195982094794SBarry Smith       rstart - first row in new global matrix generated
196082094794SBarry Smith   */
19619566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19629566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
196382094794SBarry Smith   m = m / bs;
196482094794SBarry Smith   n = n / bs;
196582094794SBarry Smith 
196682094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
196782094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
196882094794SBarry Smith     ii  = aij->i;
196982094794SBarry Smith     jj  = aij->j;
197082094794SBarry Smith 
197182094794SBarry Smith     /*
197282094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
197382094794SBarry Smith         portions of the matrix in order to do correct preallocation
197482094794SBarry Smith     */
197582094794SBarry Smith 
197682094794SBarry Smith     /* first get start and end of "diagonal" columns */
197782094794SBarry Smith     if (csize == PETSC_DECIDE) {
19789566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
197982094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
198082094794SBarry Smith         nlocal = m;
198182094794SBarry Smith       } else {
198282094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
198382094794SBarry Smith       }
198482094794SBarry Smith     } else {
198582094794SBarry Smith       nlocal = csize / bs;
198682094794SBarry Smith     }
19879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
198882094794SBarry Smith     rstart = rend - nlocal;
1989aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
199082094794SBarry Smith 
199182094794SBarry Smith     /* next, compute all the lengths */
19929566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
199382094794SBarry Smith     for (i = 0; i < m; i++) {
199482094794SBarry Smith       jend = ii[i + 1] - ii[i];
199582094794SBarry Smith       olen = 0;
199682094794SBarry Smith       dlen = 0;
199782094794SBarry Smith       for (j = 0; j < jend; j++) {
199882094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
199982094794SBarry Smith         else dlen++;
200082094794SBarry Smith         jj++;
200182094794SBarry Smith       }
200282094794SBarry Smith       olens[i] = olen;
200382094794SBarry Smith       dlens[i] = dlen;
200482094794SBarry Smith     }
20059566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
20069566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
2007*fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
20089566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20099566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20109566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
201182094794SBarry Smith   } else {
201282094794SBarry Smith     PetscInt ml, nl;
201382094794SBarry Smith 
201482094794SBarry Smith     M = *newmat;
20159566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20165f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20179566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
201882094794SBarry Smith     /*
201982094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
202082094794SBarry Smith        rather than the slower MatSetValues().
202182094794SBarry Smith     */
202282094794SBarry Smith     M->was_assembled = PETSC_TRUE;
202382094794SBarry Smith     M->assembled     = PETSC_FALSE;
202482094794SBarry Smith   }
20259566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
202782094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
202882094794SBarry Smith   ii  = aij->i;
202982094794SBarry Smith   jj  = aij->j;
203082094794SBarry Smith   aa  = aij->a;
203182094794SBarry Smith   for (i = 0; i < m; i++) {
203282094794SBarry Smith     row   = rstart / bs + i;
203382094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20349371c9d4SSatish Balay     cwork = jj;
20359371c9d4SSatish Balay     jj += nz;
20369371c9d4SSatish Balay     vwork = aa;
20379371c9d4SSatish Balay     aa += nz * bs * bs;
20389566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
203982094794SBarry Smith   }
204082094794SBarry Smith 
20419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
204382094794SBarry Smith   *newmat = M;
204482094794SBarry Smith 
204582094794SBarry Smith   /* save submatrix used in processor for next request */
204682094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20479566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20489566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
204982094794SBarry Smith   }
20503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
205182094794SBarry Smith }
205282094794SBarry Smith 
205366976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2054d71ae5a4SJacob Faibussowitsch {
205582094794SBarry Smith   MPI_Comm        comm, pcomm;
2056a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
205782094794SBarry Smith   const PetscInt *rows;
2058dbf0e21dSBarry Smith   PetscMPIInt     size;
2059a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
206082094794SBarry Smith 
206182094794SBarry Smith   PetscFunctionBegin;
20629566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
206382094794SBarry Smith   /* make a collective version of 'rowp' */
20649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
206582094794SBarry Smith   if (pcomm == comm) {
206682094794SBarry Smith     crowp = rowp;
206782094794SBarry Smith   } else {
20689566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20699566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20709566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20719566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
207282094794SBarry Smith   }
20739566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2074a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20769566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2077dbf0e21dSBarry Smith   if (size == 1) {
207882094794SBarry Smith     lcolp = colp;
207982094794SBarry Smith   } else {
20809566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
208182094794SBarry Smith   }
20829566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
208375f6568bSJed Brown   /* now we just get the submatrix */
20849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2085*fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2086a0a83eb5SRémi Lacroix   /* clean up */
208748a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
208848a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
209082094794SBarry Smith }
209182094794SBarry Smith 
209266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2093d71ae5a4SJacob Faibussowitsch {
20948c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20958c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20968c7482ecSBarry Smith 
20978c7482ecSBarry Smith   PetscFunctionBegin;
209826fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
209926fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
21003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21018c7482ecSBarry Smith }
21028c7482ecSBarry Smith 
210366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2104d71ae5a4SJacob Faibussowitsch {
2105f6d58c54SBarry Smith   Mat          B;
2106f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2107f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2108f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2109f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2110f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2111f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2112f6d58c54SBarry Smith 
2113f6d58c54SBarry Smith   PetscFunctionBegin;
21149566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2116f6d58c54SBarry Smith 
21172ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2119ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2121f6d58c54SBarry Smith   displs = recvcounts + size;
2122f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2123f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2124f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2125f6d58c54SBarry Smith   }
21269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21272ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21309566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2132f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2133f6d58c54SBarry Smith 
21342ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2135f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2136f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2137f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2138f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2139f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2140f6d58c54SBarry Smith   cnt        = 0;
2141f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2142f6d58c54SBarry Smith     /* put in lower diagonal portion */
2143f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2144f6d58c54SBarry Smith     while (m > 0) {
2145f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2146f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2147f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2148f6d58c54SBarry Smith       m--;
2149f6d58c54SBarry Smith     }
2150f6d58c54SBarry Smith 
2151f6d58c54SBarry Smith     /* put in diagonal portion */
2152ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2153f6d58c54SBarry Smith 
2154f6d58c54SBarry Smith     /* put in upper diagonal portion */
2155ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2156f6d58c54SBarry Smith   }
21575f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2158f6d58c54SBarry Smith 
21592ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2160f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2161f6d58c54SBarry Smith     recvcounts[i] = 0;
2162ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2163f6d58c54SBarry Smith   }
2164f6d58c54SBarry Smith   displs[0] = 0;
2165ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21672ef1f0ffSBarry Smith   /*  Assemble the matrix into useable form (note numerical values not yet set)  */
2168f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21699566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2170f6d58c54SBarry Smith   /* set the b->i indices */
2171f6d58c54SBarry Smith   b->i[0] = 0;
2172ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21739566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21769566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2177f6d58c54SBarry Smith 
2178b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2179f6d58c54SBarry Smith   *newmat = B;
21803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2181f6d58c54SBarry Smith }
2182f6d58c54SBarry Smith 
218366976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2184d71ae5a4SJacob Faibussowitsch {
2185b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2186f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2187b1a666ecSBarry Smith 
2188b1a666ecSBarry Smith   PetscFunctionBegin;
2189b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21909566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21913ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2192b1a666ecSBarry Smith   }
2193b1a666ecSBarry Smith 
219448a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21954e980039SJed Brown 
2196b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2197b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21989566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2199b1a666ecSBarry Smith       its--;
2200b1a666ecSBarry Smith     }
2201b1a666ecSBarry Smith 
2202b1a666ecSBarry Smith     while (its--) {
22039566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22049566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2205b1a666ecSBarry Smith 
2206b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22079566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22089566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2209b1a666ecSBarry Smith 
2210b1a666ecSBarry Smith       /* local sweep */
22119566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2212b1a666ecSBarry Smith     }
2213b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2214b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22159566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2216b1a666ecSBarry Smith       its--;
2217b1a666ecSBarry Smith     }
2218b1a666ecSBarry Smith     while (its--) {
22199566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22209566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2221b1a666ecSBarry Smith 
2222b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22239566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22249566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2225b1a666ecSBarry Smith 
2226b1a666ecSBarry Smith       /* local sweep */
22279566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2228b1a666ecSBarry Smith     }
2229b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2230b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22319566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2232b1a666ecSBarry Smith       its--;
2233b1a666ecSBarry Smith     }
2234b1a666ecSBarry Smith     while (its--) {
22359566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22369566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2237b1a666ecSBarry Smith 
2238b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22399566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22409566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2241b1a666ecSBarry Smith 
2242b1a666ecSBarry Smith       /* local sweep */
22439566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2244b1a666ecSBarry Smith     }
2245ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2246b1a666ecSBarry Smith 
22479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2249b1a666ecSBarry Smith }
2250b1a666ecSBarry Smith 
225166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2252d71ae5a4SJacob Faibussowitsch {
225347f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2254a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
225547f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
225647f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
225747f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
225847f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
225947f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
226047f7623dSRémi Lacroix   PetscReal   *work;
226147f7623dSRémi Lacroix 
226247f7623dSRémi Lacroix   PetscFunctionBegin;
22639566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22649566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2265857cbf51SRichard Tran Mills   if (type == NORM_2) {
226647f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
226747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226947f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
227047f7623dSRémi Lacroix           a_val++;
227147f7623dSRémi Lacroix         }
227247f7623dSRémi Lacroix       }
227347f7623dSRémi Lacroix     }
227447f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
227547f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227647f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227747f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
227847f7623dSRémi Lacroix           b_val++;
227947f7623dSRémi Lacroix         }
228047f7623dSRémi Lacroix       }
228147f7623dSRémi Lacroix     }
2282857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
228347f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
228747f7623dSRémi Lacroix           a_val++;
228847f7623dSRémi Lacroix         }
228947f7623dSRémi Lacroix       }
229047f7623dSRémi Lacroix     }
229147f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
229547f7623dSRémi Lacroix           b_val++;
229647f7623dSRémi Lacroix         }
229747f7623dSRémi Lacroix       }
229847f7623dSRémi Lacroix     }
2299857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
230047f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
230147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230347f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
230447f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
230547f7623dSRémi Lacroix           a_val++;
230647f7623dSRémi Lacroix         }
230747f7623dSRémi Lacroix       }
230847f7623dSRémi Lacroix     }
230947f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
231047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
231147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
231247f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
231347f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
231447f7623dSRémi Lacroix           b_val++;
231547f7623dSRémi Lacroix         }
231647f7623dSRémi Lacroix       }
231747f7623dSRémi Lacroix     }
2318857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2319a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2320a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2321a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2322857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2323a873a8cdSSam Reynolds           a_val++;
2324a873a8cdSSam Reynolds         }
2325a873a8cdSSam Reynolds       }
2326a873a8cdSSam Reynolds     }
2327a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2328a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2329a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2330857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2331a873a8cdSSam Reynolds           b_val++;
2332a873a8cdSSam Reynolds         }
2333a873a8cdSSam Reynolds       }
2334a873a8cdSSam Reynolds     }
2335857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2336857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2337857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2338857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2339857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2340857cbf51SRichard Tran Mills           a_val++;
2341857cbf51SRichard Tran Mills         }
2342857cbf51SRichard Tran Mills       }
2343857cbf51SRichard Tran Mills     }
2344857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2345857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2346857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2347857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2348857cbf51SRichard Tran Mills           b_val++;
2349857cbf51SRichard Tran Mills         }
2350857cbf51SRichard Tran Mills       }
2351857cbf51SRichard Tran Mills     }
2352857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2353857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23541c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
235547f7623dSRémi Lacroix   } else {
23561c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
235747f7623dSRémi Lacroix   }
23589566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2359857cbf51SRichard Tran Mills   if (type == NORM_2) {
2360a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2361857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2362a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
236347f7623dSRémi Lacroix   }
23643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
236547f7623dSRémi Lacroix }
236647f7623dSRémi Lacroix 
236766976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2368d71ae5a4SJacob Faibussowitsch {
2369bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2370bbead8a2SBarry Smith 
2371bbead8a2SBarry Smith   PetscFunctionBegin;
23729566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23737b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23747b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23757b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2377bbead8a2SBarry Smith }
2378bbead8a2SBarry Smith 
237966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2380d71ae5a4SJacob Faibussowitsch {
23817d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23826f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23837d68702bSBarry Smith 
23847d68702bSBarry Smith   PetscFunctionBegin;
23856f33a894SBarry Smith   if (!Y->preallocated) {
23869566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23876f33a894SBarry Smith   } else if (!aij->nz) {
2388b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23899566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2390b83222d8SBarry Smith     aij->nonew = nonew;
23917d68702bSBarry Smith   }
23929566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23947d68702bSBarry Smith }
23958c7482ecSBarry Smith 
239666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2397d71ae5a4SJacob Faibussowitsch {
23983b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23993b49f96aSBarry Smith 
24003b49f96aSBarry Smith   PetscFunctionBegin;
24015f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
24029566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
24033b49f96aSBarry Smith   if (d) {
24043b49f96aSBarry Smith     PetscInt rstart;
24059566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
24063b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
24073b49f96aSBarry Smith   }
24083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24093b49f96aSBarry Smith }
24103b49f96aSBarry Smith 
241166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2412d71ae5a4SJacob Faibussowitsch {
2413a5b7ff6bSBarry Smith   PetscFunctionBegin;
2414a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2416a5b7ff6bSBarry Smith }
2417a5b7ff6bSBarry Smith 
241817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
241917ea310bSPierre Jolivet {
242017ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
242117ea310bSPierre Jolivet 
242217ea310bSPierre Jolivet   PetscFunctionBegin;
242317ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
242417ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
242517ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
242617ea310bSPierre Jolivet }
242717ea310bSPierre Jolivet 
24283964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2429cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2430cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2431cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
243297304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24337c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24347c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2435f4259b30SLisandro Dalcin                                        NULL,
2436f4259b30SLisandro Dalcin                                        NULL,
2437f4259b30SLisandro Dalcin                                        NULL,
2438f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2439f4259b30SLisandro Dalcin                                        NULL,
2440f4259b30SLisandro Dalcin                                        NULL,
2441b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2442cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
244397304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24447fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2445cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2446cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
244897304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2449cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2450cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2451cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2452d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2453f4259b30SLisandro Dalcin                                        NULL,
2454f4259b30SLisandro Dalcin                                        NULL,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
245726cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2458f4259b30SLisandro Dalcin                                        NULL,
2459f4259b30SLisandro Dalcin                                        NULL,
2460a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2461f4259b30SLisandro Dalcin                                        NULL,
2462d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2463f4259b30SLisandro Dalcin                                        NULL,
2464f4259b30SLisandro Dalcin                                        NULL,
2465f4259b30SLisandro Dalcin                                        NULL,
2466f4259b30SLisandro Dalcin                                        NULL,
2467d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24687dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2469cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2470cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24713c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2472f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2473cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24747d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2475f4259b30SLisandro Dalcin                                        NULL,
24766f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2477f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2478f4259b30SLisandro Dalcin                                        NULL,
2479f4259b30SLisandro Dalcin                                        NULL,
2480f4259b30SLisandro Dalcin                                        NULL,
2481f4259b30SLisandro Dalcin                                        NULL,
248293dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2483f4259b30SLisandro Dalcin                                        NULL,
2484cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
248582094794SBarry Smith                                        MatPermute_MPIBAIJ,
2486cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24877dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2488f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2489f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494f4259b30SLisandro Dalcin                                        NULL,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2503f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2504f4259b30SLisandro Dalcin                                        NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
25115bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2512f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        NULL,
25302726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2531f4259b30SLisandro Dalcin                                        NULL,
2532f4259b30SLisandro Dalcin                                        /*104*/ NULL,
253399cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25348c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2538f4259b30SLisandro Dalcin                                        NULL,
2539f4259b30SLisandro Dalcin                                        NULL,
2540f4259b30SLisandro Dalcin                                        NULL,
25413b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2542d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2543f4259b30SLisandro Dalcin                                        NULL,
25444683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2545f4259b30SLisandro Dalcin                                        NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2548f4259b30SLisandro Dalcin                                        NULL,
2549f4259b30SLisandro Dalcin                                        NULL,
2550f4259b30SLisandro Dalcin                                        NULL,
2551e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2552f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2553a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25543964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2555f4259b30SLisandro Dalcin                                        NULL,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2558f4259b30SLisandro Dalcin                                        NULL,
2559f4259b30SLisandro Dalcin                                        NULL,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2563f4259b30SLisandro Dalcin                                        NULL,
2564f4259b30SLisandro Dalcin                                        NULL,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
256746533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2568f4259b30SLisandro Dalcin                                        NULL,
2569f4259b30SLisandro Dalcin                                        NULL,
2570bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2571f4259b30SLisandro Dalcin                                        NULL,
2572d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2573d70f29a3SPierre Jolivet                                        NULL,
2574d70f29a3SPierre Jolivet                                        NULL,
257599a7f59eSMark Adams                                        NULL,
257699a7f59eSMark Adams                                        NULL,
25777fb60732SBarry Smith                                        NULL,
2578dec0b466SHong Zhang                                        /*150*/ NULL,
257917ea310bSPierre Jolivet                                        MatEliminateZeros_MPIBAIJ};
258079bdfe76SSatish Balay 
2581cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2582c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2583d94109b8SHong Zhang 
258466976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2585d71ae5a4SJacob Faibussowitsch {
2586b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2587f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2588f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2589f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2590d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25913bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2592aac34f13SBarry Smith 
2593aac34f13SBarry Smith   PetscFunctionBegin;
25949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2599d0f46423SBarry Smith   m      = B->rmap->n / bs;
2600d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2601d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2602d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2603b8d659d7SLisandro Dalcin 
26045f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
26059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2606aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2607cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26085f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2609b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
261037cd3c0dSBarry Smith     dlen   = 0;
261137cd3c0dSBarry Smith     olen   = 0;
2612cf12db73SBarry Smith     JJ     = jj + ii[i];
2613b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
261437cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
261537cd3c0dSBarry Smith       else dlen++;
2616aac34f13SBarry Smith       JJ++;
2617aac34f13SBarry Smith     }
261837cd3c0dSBarry Smith     d_nnz[i] = dlen;
261937cd3c0dSBarry Smith     o_nnz[i] = olen;
2620aac34f13SBarry Smith   }
26219566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26229566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2623aac34f13SBarry Smith 
2624b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
262548a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2626b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2627b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2628cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2629cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2630bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2631cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26329566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26333adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26343adadaf3SJed Brown       PetscInt j;
26353adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26363adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26379566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26383adadaf3SJed Brown       }
26393adadaf3SJed Brown     }
2640aac34f13SBarry Smith   }
2641aac34f13SBarry Smith 
26429566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26433bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26443bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26473bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26483bd0feecSPierre Jolivet 
26499566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2651aac34f13SBarry Smith }
2652aac34f13SBarry Smith 
2653aac34f13SBarry Smith /*@C
265411a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2655aac34f13SBarry Smith 
2656d083f849SBarry Smith   Collective
2657aac34f13SBarry Smith 
2658aac34f13SBarry Smith   Input Parameters:
26591c4f3114SJed Brown + B  - the matrix
2660dfb205c3SBarry Smith . bs - the block size
266120f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2662aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2663aac34f13SBarry Smith - v  - optional values in the matrix
2664aac34f13SBarry Smith 
2665664954b6SBarry Smith   Level: advanced
2666aac34f13SBarry Smith 
266795452b02SPatrick Sanan   Notes:
266811a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
266911a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26703adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
267111a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26723adadaf3SJed Brown   block column and the second index is over columns within a block.
26733adadaf3SJed Brown 
2674664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2675664954b6SBarry Smith 
26767d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2677aac34f13SBarry Smith @*/
2678d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2679d71ae5a4SJacob Faibussowitsch {
2680aac34f13SBarry Smith   PetscFunctionBegin;
26816ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26826ba663aaSJed Brown   PetscValidType(B, 1);
26836ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2684cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2686aac34f13SBarry Smith }
2687aac34f13SBarry Smith 
2688d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2689d71ae5a4SJacob Faibussowitsch {
2690ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2691535b19f3SBarry Smith   PetscInt     i;
26925d2a9ed1SStefano Zampini   PetscMPIInt  size;
2693a23d5eceSKris Buschelman 
2694a23d5eceSKris Buschelman   PetscFunctionBegin;
2695ad79cf63SBarry Smith   if (B->hash_active) {
2696aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2697ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2698ad79cf63SBarry Smith   }
2699ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
27009566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
27019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2704899cda47SBarry Smith 
2705a23d5eceSKris Buschelman   if (d_nnz) {
2706ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2707a23d5eceSKris Buschelman   }
2708a23d5eceSKris Buschelman   if (o_nnz) {
2709ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2710a23d5eceSKris Buschelman   }
2711a23d5eceSKris Buschelman 
2712a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2713d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2714d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2715d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2716d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2717a23d5eceSKris Buschelman 
2718ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2719d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2720d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2721d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2722d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2723a23d5eceSKris Buschelman 
2724cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2725eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2726cb7b82ddSBarry Smith #else
27279566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2728cb7b82ddSBarry Smith #endif
27299566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27309566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27319566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2732cb7b82ddSBarry Smith 
27339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
27349566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27359566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27369566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27379566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2738cb7b82ddSBarry Smith 
2739ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27409566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27419566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27429566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2743a23d5eceSKris Buschelman 
27449566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27459566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2746526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2747cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2748cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2750a23d5eceSKris Buschelman }
2751a23d5eceSKris Buschelman 
27527087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27537087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27545bf65638SKris Buschelman 
2755d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2756d71ae5a4SJacob Faibussowitsch {
275782094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
275882094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
275982094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
276082094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
276182094794SBarry Smith 
276282094794SBarry Smith   PetscFunctionBegin;
27639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
276482094794SBarry Smith   ii[0] = 0;
276582094794SBarry Smith   for (i = 0; i < M; i++) {
276608401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
276708401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
276882094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27695ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27705ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27719371c9d4SSatish Balay       if (jd[j] == i) {
27729371c9d4SSatish Balay         ii[i + 1]--;
27739371c9d4SSatish Balay         break;
27749371c9d4SSatish Balay       }
27755ee9ba1cSJed Brown     }
277682094794SBarry Smith   }
27779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
277882094794SBarry Smith   cnt = 0;
277982094794SBarry Smith   for (i = 0; i < M; i++) {
278082094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
278182094794SBarry Smith       if (garray[jo[j]] > rstart) break;
278282094794SBarry Smith       jj[cnt++] = garray[jo[j]];
278382094794SBarry Smith     }
278482094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2785ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
278682094794SBarry Smith     }
2787ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
278882094794SBarry Smith   }
27899566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279182094794SBarry Smith }
279282094794SBarry Smith 
2793c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
279462471d69SBarry Smith 
2795cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2796b2573a8aSBarry Smith 
2797d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2798d71ae5a4SJacob Faibussowitsch {
279962471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
280085a69837SSatish Balay   Mat_MPIAIJ  *b;
28015f80ce2aSJacob Faibussowitsch   Mat          B;
280262471d69SBarry Smith 
280362471d69SBarry Smith   PetscFunctionBegin;
28045f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
280562471d69SBarry Smith 
28060f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28070f6d62edSLisandro Dalcin     B = *newmat;
28080f6d62edSLisandro Dalcin   } else {
28099566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28109566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28119566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28129566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28139566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28149566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28150f6d62edSLisandro Dalcin   }
281662471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
281762471d69SBarry Smith 
28180f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28199566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28209566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28210f6d62edSLisandro Dalcin   } else {
28227c612885SStefano Zampini     PetscInt   *garray = a->garray;
28237c612885SStefano Zampini     Mat_SeqAIJ *bB;
28247c612885SStefano Zampini     PetscInt    bs, nnz;
28259566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28269566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28277c612885SStefano Zampini     /* just clear out the data structure */
28287c612885SStefano Zampini     PetscCall(MatDisAssemble_MPIAIJ(B));
28299566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28309566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28317c612885SStefano Zampini 
28327c612885SStefano Zampini     /* Global numbering for b->B columns */
28337c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28347c612885SStefano Zampini     bs  = A->rmap->bs;
28357c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28367c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28377c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28387c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28397c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28407c612885SStefano Zampini     }
28410f6d62edSLisandro Dalcin   }
28429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28440f6d62edSLisandro Dalcin 
2845511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28469566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
284762471d69SBarry Smith   } else {
284862471d69SBarry Smith     *newmat = B;
284962471d69SBarry Smith   }
28503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
285162471d69SBarry Smith }
285262471d69SBarry Smith 
28530bad9183SKris Buschelman /*MC
2854fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28550bad9183SKris Buschelman 
28560bad9183SKris Buschelman    Options Database Keys:
285711a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28588c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28596679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
286067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28610bad9183SKris Buschelman 
28620bad9183SKris Buschelman    Level: beginner
28630cd7f59aSBarry Smith 
286411a5261eSBarry Smith    Note:
28655e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
286611a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28670bad9183SKris Buschelman 
28685e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28690bad9183SKris Buschelman M*/
28700bad9183SKris Buschelman 
2871cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2872c0cdd4a1SDahai Guo 
2873d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2874d71ae5a4SJacob Faibussowitsch {
2875273d9f13SBarry Smith   Mat_MPIBAIJ *b;
287694ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2877273d9f13SBarry Smith 
2878273d9f13SBarry Smith   PetscFunctionBegin;
28794dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
288082502324SSatish Balay   B->data      = (void *)b;
2881aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2882273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2883273d9f13SBarry Smith 
2884273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2887273d9f13SBarry Smith 
2888273d9f13SBarry Smith   /* build local table of row and column ownerships */
28899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2890273d9f13SBarry Smith 
2891273d9f13SBarry Smith   /* build cache for off array entries formed */
28929566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
289326fbe8dcSKarl Rupp 
2894273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28950298fd71SBarry Smith   b->colmap      = NULL;
28960298fd71SBarry Smith   b->garray      = NULL;
2897273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2898273d9f13SBarry Smith 
2899273d9f13SBarry Smith   /* stuff used in block assembly */
2900f4259b30SLisandro Dalcin   b->barray = NULL;
2901273d9f13SBarry Smith 
2902273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2903f4259b30SLisandro Dalcin   b->lvec  = NULL;
2904f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2905273d9f13SBarry Smith 
2906273d9f13SBarry Smith   /* stuff for MatGetRow() */
2907f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2908f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2909273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2910273d9f13SBarry Smith 
2911273d9f13SBarry Smith   /* hash table stuff */
2912f4259b30SLisandro Dalcin   b->ht           = NULL;
2913f4259b30SLisandro Dalcin   b->hd           = NULL;
2914273d9f13SBarry Smith   b->ht_size      = 0;
2915273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2916273d9f13SBarry Smith   b->ht_fact      = 0;
2917273d9f13SBarry Smith   b->ht_total_ct  = 0;
2918273d9f13SBarry Smith   b->ht_insert_ct = 0;
2919273d9f13SBarry Smith 
29207dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29217a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29227a868f3eSHong Zhang 
29239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29267ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29287ea3e4caSstefano_zampini #endif
29299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29369566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
293794ae4db5SBarry Smith 
2938d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29399566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
294094ae4db5SBarry Smith   if (flg) {
294194ae4db5SBarry Smith     PetscReal fact = 1.39;
29429566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29439566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
294494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29459566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29469566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
294794ae4db5SBarry Smith   }
2948d0609cedSBarry Smith   PetscOptionsEnd();
29493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2950273d9f13SBarry Smith }
2951273d9f13SBarry Smith 
29522920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2953209238afSKris Buschelman /*MC
2954002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2955209238afSKris Buschelman 
295611a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
295711a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2958209238afSKris Buschelman 
2959209238afSKris Buschelman    Options Database Keys:
296011a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2961209238afSKris Buschelman 
2962209238afSKris Buschelman   Level: beginner
2963209238afSKris Buschelman 
296467be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2965209238afSKris Buschelman M*/
2966209238afSKris Buschelman 
2967273d9f13SBarry Smith /*@C
296811a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
296967be906fSBarry Smith   (block compressed row).
2970273d9f13SBarry Smith 
2971c3339decSBarry Smith   Collective
2972273d9f13SBarry Smith 
2973273d9f13SBarry Smith   Input Parameters:
29741c4f3114SJed Brown + B     - the matrix
297511a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
297667be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2977273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2978273d9f13SBarry Smith            submatrix  (same for all local rows)
2979273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2980273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
298167be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
298295742e49SBarry Smith            set it even if it is zero.
2983273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2984273d9f13SBarry Smith            submatrix (same for all local rows).
2985273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2986273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
298767be906fSBarry Smith            each block row) or `NULL`.
2988273d9f13SBarry Smith 
298949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2990273d9f13SBarry Smith 
2991273d9f13SBarry Smith   Options Database Keys:
29928c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
299367b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
2994273d9f13SBarry Smith 
299567be906fSBarry Smith   Level: intermediate
299667be906fSBarry Smith 
2997273d9f13SBarry Smith   Notes:
299867be906fSBarry Smith   For good matrix assembly performance
299967be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
300067be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
300167be906fSBarry Smith   performance can be increased by more than a factor of 50.
300267be906fSBarry Smith 
300311a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3004273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
3005273d9f13SBarry Smith 
3006273d9f13SBarry Smith   Storage Information:
3007273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3008273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3009273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3010273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3011273d9f13SBarry Smith 
3012273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
301367be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
301467be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3015273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
301667be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3017273d9f13SBarry Smith 
3018273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3019273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3020273d9f13SBarry Smith 
3021273d9f13SBarry Smith .vb
3022273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3023a4b1a0f6SJed Brown           --------------------------
3024273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3025273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3026273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3027a4b1a0f6SJed Brown           --------------------------
3028273d9f13SBarry Smith .ve
3029273d9f13SBarry Smith 
3030273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3031273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3032273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
303311a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3034273d9f13SBarry Smith 
303567be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
303667be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3037273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
303820f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3039273d9f13SBarry Smith 
304011a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3041aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
304267be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3043aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3044aa95bbe8SBarry Smith 
304567be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3046273d9f13SBarry Smith @*/
3047d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3048d71ae5a4SJacob Faibussowitsch {
3049273d9f13SBarry Smith   PetscFunctionBegin;
30506ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30516ba663aaSJed Brown   PetscValidType(B, 1);
30526ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3053cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3055273d9f13SBarry Smith }
3056273d9f13SBarry Smith 
30572920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
305879bdfe76SSatish Balay /*@C
305911a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
306067be906fSBarry Smith   (block compressed row).
306179bdfe76SSatish Balay 
3062d083f849SBarry Smith   Collective
3063db81eaa0SLois Curfman McInnes 
306479bdfe76SSatish Balay   Input Parameters:
3065db81eaa0SLois Curfman McInnes + comm  - MPI communicator
306611a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
306711a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
306811a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
306992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307092e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
307111a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
307292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307392e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
307411a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
307511a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
307647a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
307779bdfe76SSatish Balay            submatrix  (same for all local rows)
307847a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
307992e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30800298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
308195742e49SBarry Smith            and set it even if it is zero.
308247a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
308379bdfe76SSatish Balay            submatrix (same for all local rows).
308447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
308592e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30860298fd71SBarry Smith            each block row) or NULL.
308779bdfe76SSatish Balay 
308879bdfe76SSatish Balay   Output Parameter:
308979bdfe76SSatish Balay . A - the matrix
309079bdfe76SSatish Balay 
3091db81eaa0SLois Curfman McInnes   Options Database Keys:
30928c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
309367b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
30943ffaccefSLois Curfman McInnes 
309567be906fSBarry Smith   Level: intermediate
309667be906fSBarry Smith 
309767be906fSBarry Smith   Notes:
309877433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
309977433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
310077433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
310177433607SBarry Smith 
310267be906fSBarry Smith   For good matrix assembly performance
310367be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
310467be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
310567be906fSBarry Smith   performance can be increased by more than a factor of 50.
310667be906fSBarry Smith 
310749a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
310849a6f317SBarry Smith 
310947a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
311047a75d0bSBarry Smith 
311179bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
311279bdfe76SSatish Balay   (possibly both).
311379bdfe76SSatish Balay 
311411a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3115be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3116be79a94dSBarry Smith 
311779bdfe76SSatish Balay   Storage Information:
311879bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
311979bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
312079bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
312179bdfe76SSatish Balay   local matrix (a rectangular submatrix).
312279bdfe76SSatish Balay 
312379bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
312479bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
312567be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
312679bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
312767be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
312879bdfe76SSatish Balay 
312979bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
313079bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
313179bdfe76SSatish Balay 
3132db81eaa0SLois Curfman McInnes .vb
3133db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3134a4b1a0f6SJed Brown           --------------------------
3135db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3136db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3137db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3138a4b1a0f6SJed Brown           --------------------------
3139db81eaa0SLois Curfman McInnes .ve
314079bdfe76SSatish Balay 
314179bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
314279bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
314379bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
314411a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
314579bdfe76SSatish Balay 
314667be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
314767be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
314879bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
314920f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
315079bdfe76SSatish Balay 
315142747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
315279bdfe76SSatish Balay @*/
3153d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3154d71ae5a4SJacob Faibussowitsch {
3155b24ad042SBarry Smith   PetscMPIInt size;
315679bdfe76SSatish Balay 
3157d64ed03dSBarry Smith   PetscFunctionBegin;
31589566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31599566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3161273d9f13SBarry Smith   if (size > 1) {
31629566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31639566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3164273d9f13SBarry Smith   } else {
31659566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31669566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31673914022bSBarry Smith   }
31683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
316979bdfe76SSatish Balay }
3170026e39d0SSatish Balay 
3171d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3172d71ae5a4SJacob Faibussowitsch {
31730ac07820SSatish Balay   Mat          mat;
31740ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3175b24ad042SBarry Smith   PetscInt     len = 0;
31760ac07820SSatish Balay 
3177d64ed03dSBarry Smith   PetscFunctionBegin;
3178f4259b30SLisandro Dalcin   *newmat = NULL;
31799566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31809566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31819566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31827fff6886SHong Zhang 
3183d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3184273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
31850ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
31867fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
31877fff6886SHong Zhang 
3188273d9f13SBarry Smith   a             = (Mat_MPIBAIJ *)mat->data;
3189d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
31900ac07820SSatish Balay   a->bs2        = oldmat->bs2;
31910ac07820SSatish Balay   a->mbs        = oldmat->mbs;
31920ac07820SSatish Balay   a->nbs        = oldmat->nbs;
31930ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
31940ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
31950ac07820SSatish Balay 
31969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
31979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3198899cda47SBarry Smith 
31990ac07820SSatish Balay   a->size         = oldmat->size;
32000ac07820SSatish Balay   a->rank         = oldmat->rank;
3201aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3202aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3203f4259b30SLisandro Dalcin   a->rowindices   = NULL;
3204f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
32050ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
3206f4259b30SLisandro Dalcin   a->barray       = NULL;
3207899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3208899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3209899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3210899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32110ac07820SSatish Balay 
3212133cdb44SSatish Balay   /* hash table stuff */
3213f4259b30SLisandro Dalcin   a->ht           = NULL;
3214f4259b30SLisandro Dalcin   a->hd           = NULL;
3215133cdb44SSatish Balay   a->ht_size      = 0;
3216133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
321725fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3218133cdb44SSatish Balay   a->ht_total_ct  = 0;
3219133cdb44SSatish Balay   a->ht_insert_ct = 0;
3220133cdb44SSatish Balay 
32219566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32220ac07820SSatish Balay   if (oldmat->colmap) {
3223aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3224eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
322548e59246SSatish Balay #else
32269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32279566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
322848e59246SSatish Balay #endif
3229f4259b30SLisandro Dalcin   } else a->colmap = NULL;
32304beb1cfeSHong Zhang 
32310ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
32329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
32339566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3234f4259b30SLisandro Dalcin   } else a->garray = NULL;
32350ac07820SSatish Balay 
32369566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32379566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32389566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32397fff6886SHong Zhang 
32409566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32419566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
32429566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32430ac07820SSatish Balay   *newmat = mat;
32443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32450ac07820SSatish Balay }
324657b952d6SSatish Balay 
3247618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3248d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3249d71ae5a4SJacob Faibussowitsch {
3250b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3251b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3252b51a4376SLisandro Dalcin   PetscScalar *matvals;
3253b51a4376SLisandro Dalcin 
3254b51a4376SLisandro Dalcin   PetscFunctionBegin;
32559566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3256b51a4376SLisandro Dalcin 
3257b51a4376SLisandro Dalcin   /* read in matrix header */
32589566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32595f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32609371c9d4SSatish Balay   M  = header[1];
32619371c9d4SSatish Balay   N  = header[2];
32629371c9d4SSatish Balay   nz = header[3];
32635f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32645f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32655f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3266b51a4376SLisandro Dalcin 
3267b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32689566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3269618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3270618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3271618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3272b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3273b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3274b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3277b51a4376SLisandro Dalcin 
3278b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32799566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32805f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32819566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32829566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32859371c9d4SSatish Balay   mbs = m / bs;
32869371c9d4SSatish Balay   nbs = n / bs;
3287b51a4376SLisandro Dalcin 
3288b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32909566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32919371c9d4SSatish Balay   rowidxs[0] = 0;
32929371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
32931c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32945f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3295b51a4376SLisandro Dalcin 
3296b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32989566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
32999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3300b51a4376SLisandro Dalcin 
3301b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3302b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3303b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3304618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3305b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3306b51a4376SLisandro Dalcin 
33079566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33089566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33099566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33109566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3311b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33129566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33139566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3314618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3315618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3316618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3317618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3318618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3319618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3320618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3321b51a4376SLisandro Dalcin             } else {
33229566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3323b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3324b51a4376SLisandro Dalcin             }
3325b51a4376SLisandro Dalcin           }
3326618cc2edSLisandro Dalcin         }
3327618cc2edSLisandro Dalcin       }
3328618cc2edSLisandro Dalcin     }
33299566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33309566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33319566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33329566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33339566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3334b51a4376SLisandro Dalcin   }
3335b51a4376SLisandro Dalcin 
3336b51a4376SLisandro Dalcin   /* store matrix values */
3337b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3338b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33399566063dSJacob Faibussowitsch     PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES));
3340b51a4376SLisandro Dalcin   }
3341b51a4376SLisandro Dalcin 
33429566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33439566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3347b51a4376SLisandro Dalcin }
3348b51a4376SLisandro Dalcin 
3349d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3350d71ae5a4SJacob Faibussowitsch {
33517f489da9SVaclav Hapla   PetscBool isbinary;
33524683f7a4SShri Abhyankar 
33534683f7a4SShri Abhyankar   PetscFunctionBegin;
33549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33555f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33569566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33584683f7a4SShri Abhyankar }
33594683f7a4SShri Abhyankar 
3360133cdb44SSatish Balay /*@
336111a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3362133cdb44SSatish Balay 
3363133cdb44SSatish Balay   Input Parameters:
3364a2b725a8SWilliam Gropp + mat  - the matrix
3365a2b725a8SWilliam Gropp - fact - factor
3366133cdb44SSatish Balay 
336711a5261eSBarry Smith   Options Database Key:
336811a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3369fee21e36SBarry Smith 
33708c890885SBarry Smith   Level: advanced
33718c890885SBarry Smith 
337267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3373133cdb44SSatish Balay @*/
3374d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3375d71ae5a4SJacob Faibussowitsch {
33765bf65638SKris Buschelman   PetscFunctionBegin;
3377cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33795bf65638SKris Buschelman }
33805bf65638SKris Buschelman 
3381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3382d71ae5a4SJacob Faibussowitsch {
338325fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3384133cdb44SSatish Balay 
3385133cdb44SSatish Balay   PetscFunctionBegin;
3386133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3387133cdb44SSatish Balay   baij->ht_fact = fact;
33883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3389133cdb44SSatish Balay }
3390f2a5309cSSatish Balay 
3391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3392d71ae5a4SJacob Faibussowitsch {
3393f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3394ab4d48faSStefano Zampini   PetscBool    flg;
33955fd66863SKarl Rupp 
3396f2a5309cSSatish Balay   PetscFunctionBegin;
33979566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33985f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
339921e72a00SBarry Smith   if (Ad) *Ad = a->A;
340021e72a00SBarry Smith   if (Ao) *Ao = a->B;
340121e72a00SBarry Smith   if (colmap) *colmap = a->garray;
34023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3403f2a5309cSSatish Balay }
340485535b8eSBarry Smith 
340585535b8eSBarry Smith /*
340685535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
340785535b8eSBarry Smith */
340885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
340985535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
341085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
341185535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
341285535b8eSBarry Smith #endif
341385535b8eSBarry Smith 
34142920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
341585535b8eSBarry Smith /*@C
341611a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
341785535b8eSBarry Smith 
3418c3339decSBarry Smith   Collective
341985535b8eSBarry Smith 
342085535b8eSBarry Smith   Input Parameters:
3421fe59aa6dSJacob Faibussowitsch + matin  - the matrix
342285535b8eSBarry Smith . min    - number of input rows
342385535b8eSBarry Smith . im     - input rows
342485535b8eSBarry Smith . nin    - number of input columns
342585535b8eSBarry Smith . in     - input columns
342685535b8eSBarry Smith . v      - numerical values input
342711a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
342885535b8eSBarry Smith 
342920f4b53cSBarry Smith   Level: advanced
343020f4b53cSBarry Smith 
3431fe59aa6dSJacob Faibussowitsch   Developer Notes:
343211a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
343385535b8eSBarry Smith 
343467be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
343585535b8eSBarry Smith @*/
343666976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3437d71ae5a4SJacob Faibussowitsch {
343885535b8eSBarry Smith   /* convert input arguments to C version */
343985535b8eSBarry Smith   Mat        mat = *matin;
344085535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
344185535b8eSBarry Smith   InsertMode addv = *addvin;
344285535b8eSBarry Smith 
344385535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
344485535b8eSBarry Smith   const MatScalar *value;
344585535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3446ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
344785535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
344885535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3449d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
345085535b8eSBarry Smith 
345185535b8eSBarry Smith   PetscFunctionBegin;
345285535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
345326fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34545f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34555f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
345685535b8eSBarry Smith   if (mat->assembled) {
345785535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
345885535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
345985535b8eSBarry Smith   }
34609566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
346185535b8eSBarry Smith 
346285535b8eSBarry Smith   if (!barray) {
34639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
346485535b8eSBarry Smith     baij->barray = barray;
346585535b8eSBarry Smith   }
346685535b8eSBarry Smith 
346726fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
346826fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
346926fbe8dcSKarl Rupp 
347085535b8eSBarry Smith   for (i = 0; i < m; i++) {
347185535b8eSBarry Smith     if (im[i] < 0) continue;
34726bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
347385535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
347485535b8eSBarry Smith       row = im[i] - rstart;
347585535b8eSBarry Smith       for (j = 0; j < n; j++) {
347685535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
347785535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
347885535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
347985535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
348085535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
348185535b8eSBarry Smith         } else { /* Here a copy is required */
348285535b8eSBarry Smith           if (roworiented) {
348385535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
348485535b8eSBarry Smith           } else {
348585535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
348685535b8eSBarry Smith           }
348785535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3488ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
348985535b8eSBarry Smith           }
349085535b8eSBarry Smith           barray -= bs2;
349185535b8eSBarry Smith         }
349285535b8eSBarry Smith 
349385535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
349485535b8eSBarry Smith           col = in[j] - cstart;
34959566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3496f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3497f7d195e4SLawrence Mitchell           continue;
3498f7d195e4SLawrence Mitchell         } else {
3499f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
350085535b8eSBarry Smith           if (mat->was_assembled) {
350148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
350285535b8eSBarry Smith 
350385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
350485535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35059371c9d4SSatish Balay             {
35069371c9d4SSatish Balay               PetscInt data;
3507eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
350808401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350985535b8eSBarry Smith             }
351085535b8eSBarry Smith   #else
351108401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
351285535b8eSBarry Smith   #endif
351385535b8eSBarry Smith #endif
351485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3515eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
351685535b8eSBarry Smith             col = (col - 1) / bs;
351785535b8eSBarry Smith #else
351885535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
351985535b8eSBarry Smith #endif
352085535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
35219566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
352285535b8eSBarry Smith               col = in[j];
352385535b8eSBarry Smith             }
352426fbe8dcSKarl Rupp           } else col = in[j];
35259566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
352685535b8eSBarry Smith         }
352785535b8eSBarry Smith       }
352885535b8eSBarry Smith     } else {
352985535b8eSBarry Smith       if (!baij->donotstash) {
353085535b8eSBarry Smith         if (roworiented) {
35319566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
353285535b8eSBarry Smith         } else {
35339566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
353485535b8eSBarry Smith         }
353585535b8eSBarry Smith       }
353685535b8eSBarry Smith     }
353785535b8eSBarry Smith   }
353885535b8eSBarry Smith 
353985535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
354285535b8eSBarry Smith }
3543dfb205c3SBarry Smith 
3544dfb205c3SBarry Smith /*@
354511a5261eSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block
3546dfb205c3SBarry Smith   CSR format the local rows.
3547dfb205c3SBarry Smith 
3548d083f849SBarry Smith   Collective
3549dfb205c3SBarry Smith 
3550dfb205c3SBarry Smith   Input Parameters:
3551dfb205c3SBarry Smith + comm - MPI communicator
3552dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
355311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3554dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
355511a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
3556dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
355711a5261eSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
355811a5261eSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
3559483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3560dfb205c3SBarry Smith . j    - column indices
3561dfb205c3SBarry Smith - a    - matrix values
3562dfb205c3SBarry Smith 
3563dfb205c3SBarry Smith   Output Parameter:
3564dfb205c3SBarry Smith . mat - the matrix
3565dfb205c3SBarry Smith 
3566dfb205c3SBarry Smith   Level: intermediate
3567dfb205c3SBarry Smith 
3568dfb205c3SBarry Smith   Notes:
356967be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3570dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
357111a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3572dfb205c3SBarry Smith 
35733adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35743adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35753adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35763adadaf3SJed Brown   with column-major ordering within blocks.
35773adadaf3SJed Brown 
357867be906fSBarry Smith   The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array.
3579dfb205c3SBarry Smith 
358067be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35817d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3582dfb205c3SBarry Smith @*/
3583d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3584d71ae5a4SJacob Faibussowitsch {
3585dfb205c3SBarry Smith   PetscFunctionBegin;
35865f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35875f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35889566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35899566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35909566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35919566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35929566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35939566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35949566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35959566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
35963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3597dfb205c3SBarry Smith }
3598e561ad89SHong Zhang 
3599d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3600d71ae5a4SJacob Faibussowitsch {
3601bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3602bd153df0SHong Zhang   PetscInt    *indx;
3603bd153df0SHong Zhang   PetscScalar *values;
3604e561ad89SHong Zhang 
3605e561ad89SHong Zhang   PetscFunctionBegin;
36069566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3607bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3608bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36092c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3610bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
361177f764caSHong Zhang     PetscMPIInt  rank, size;
3612e561ad89SHong Zhang 
36139566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36149371c9d4SSatish Balay     mbs = m / bs;
36159371c9d4SSatish Balay     Nbs = N / cbs;
361648a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3617da91a574SPierre Jolivet     nbs = n / cbs;
3618e561ad89SHong Zhang 
36199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3620d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
362177f764caSHong Zhang 
36229566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36239566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
362477f764caSHong Zhang     if (rank == size - 1) {
362577f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36265f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
362777f764caSHong Zhang     }
362877f764caSHong Zhang 
3629d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3630bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36319566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3632647a6520SHong Zhang       nnz = nnz / bs;
3633647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36349566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36359566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3636e561ad89SHong Zhang     }
36379566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3638e561ad89SHong Zhang 
36399566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36409566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36419566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36429566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36439566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36449566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3645d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36469566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3647e561ad89SHong Zhang   }
3648e561ad89SHong Zhang 
3649bd153df0SHong Zhang   /* numeric phase */
36509566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36519566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3652e561ad89SHong Zhang 
3653e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36549566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3655e561ad89SHong Zhang     Ii = i + rstart;
36569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36579566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3658e561ad89SHong Zhang   }
36599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3662e561ad89SHong Zhang }
3663