1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4f3da1532SBarry Smith #include "petscblaslapack.h" 579bdfe76SSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 15f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1693fea6afSBarry Smith 174a2ae208SSatish Balay #undef __FUNCT__ 18985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 19985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 207843d17aSBarry Smith { 217843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 22dfbe8321SBarry Smith PetscErrorCode ierr; 23985db425SBarry Smith PetscInt i,*idxb = 0; 2487828ca2SBarry Smith PetscScalar *va,*vb; 257843d17aSBarry Smith Vec vtmp; 267843d17aSBarry Smith 277843d17aSBarry Smith PetscFunctionBegin; 28985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 291ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 30985db425SBarry Smith if (idx) { 31192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 32985db425SBarry Smith } 337843d17aSBarry Smith 34d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 35d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 36985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 371ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 387843d17aSBarry Smith 39d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 40d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 417843d17aSBarry Smith } 427843d17aSBarry Smith 431ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 441ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 45985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 46ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 477843d17aSBarry Smith PetscFunctionReturn(0); 487843d17aSBarry Smith } 497843d17aSBarry Smith 507fc3c18eSBarry Smith EXTERN_C_BEGIN 514a2ae208SSatish Balay #undef __FUNCT__ 524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 547fc3c18eSBarry Smith { 557fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 56dfbe8321SBarry Smith PetscErrorCode ierr; 577fc3c18eSBarry Smith 587fc3c18eSBarry Smith PetscFunctionBegin; 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 607fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 617fc3c18eSBarry Smith PetscFunctionReturn(0); 627fc3c18eSBarry Smith } 637fc3c18eSBarry Smith EXTERN_C_END 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith EXTERN_C_BEGIN 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 697fc3c18eSBarry Smith { 707fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 71dfbe8321SBarry Smith PetscErrorCode ierr; 727fc3c18eSBarry Smith 737fc3c18eSBarry Smith PetscFunctionBegin; 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 757fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 767fc3c18eSBarry Smith PetscFunctionReturn(0); 777fc3c18eSBarry Smith } 787fc3c18eSBarry Smith EXTERN_C_END 797fc3c18eSBarry Smith 80537820f0SBarry Smith /* 81537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 83e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8457b952d6SSatish Balay length of colmap equals the global matrix length. 8557b952d6SSatish Balay */ 864a2ae208SSatish Balay #undef __FUNCT__ 874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8957b952d6SSatish Balay { 9057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 926849ba73SBarry Smith PetscErrorCode ierr; 93d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9457b952d6SSatish Balay 95d64ed03dSBarry Smith PetscFunctionBegin; 96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 97f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9848e59246SSatish Balay for (i=0; i<nbs; i++){ 990f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 10048e59246SSatish Balay } 10148e59246SSatish Balay #else 102b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 105928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10648e59246SSatish Balay #endif 1073a40ed3dSBarry Smith PetscFunctionReturn(0); 10857b952d6SSatish Balay } 10957b952d6SSatish Balay 110f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11180c1aa95SSatish Balay { \ 11280c1aa95SSatish Balay \ 11380c1aa95SSatish Balay brow = row/bs; \ 11480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 115ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11680c1aa95SSatish Balay bcol = col/bs; \ 11780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 118ab26458aSBarry Smith low = 0; high = nrow; \ 119ab26458aSBarry Smith while (high-low > 3) { \ 120ab26458aSBarry Smith t = (low+high)/2; \ 121ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 122ab26458aSBarry Smith else low = t; \ 123ab26458aSBarry Smith } \ 124ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 128eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 129eada6651SSatish Balay else *bap = value; \ 130ac7a638eSSatish Balay goto a_noinsert; \ 13180c1aa95SSatish Balay } \ 13280c1aa95SSatish Balay } \ 13389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 134e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 135*fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13680c1aa95SSatish Balay N = nrow++ - 1; \ 13780c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13880c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13980c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1403eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14180c1aa95SSatish Balay } \ 1423eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14380c1aa95SSatish Balay rp[_i] = bcol; \ 14480c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 145ac7a638eSSatish Balay a_noinsert:; \ 14680c1aa95SSatish Balay ailen[brow] = nrow; \ 14780c1aa95SSatish Balay } 14857b952d6SSatish Balay 149ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 150ac7a638eSSatish Balay { \ 151ac7a638eSSatish Balay brow = row/bs; \ 152ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 153ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 154ac7a638eSSatish Balay bcol = col/bs; \ 155ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 156ac7a638eSSatish Balay low = 0; high = nrow; \ 157ac7a638eSSatish Balay while (high-low > 3) { \ 158ac7a638eSSatish Balay t = (low+high)/2; \ 159ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 160ac7a638eSSatish Balay else low = t; \ 161ac7a638eSSatish Balay } \ 162ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 163ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 164ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 165ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 166ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167ac7a638eSSatish Balay else *bap = value; \ 168ac7a638eSSatish Balay goto b_noinsert; \ 169ac7a638eSSatish Balay } \ 170ac7a638eSSatish Balay } \ 17189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 172e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 173*fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 174085a36d4SBarry Smith CHKMEMQ;\ 175ac7a638eSSatish Balay N = nrow++ - 1; \ 176ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 177ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 178ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1793eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 180ac7a638eSSatish Balay } \ 1813eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 182ac7a638eSSatish Balay rp[_i] = bcol; \ 183ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 184ac7a638eSSatish Balay b_noinsert:; \ 185ac7a638eSSatish Balay bilen[brow] = nrow; \ 186ac7a638eSSatish Balay } 187ac7a638eSSatish Balay 1884a2ae208SSatish Balay #undef __FUNCT__ 1894a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 190b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19157b952d6SSatish Balay { 19257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19393fea6afSBarry Smith MatScalar value; 194273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 195dfbe8321SBarry Smith PetscErrorCode ierr; 196b24ad042SBarry Smith PetscInt i,j,row,col; 197d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 198d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 199d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20057b952d6SSatish Balay 201eada6651SSatish Balay /* Some Variables required in the macro */ 20280c1aa95SSatish Balay Mat A = baij->A; 20380c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 204b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2053eda8832SBarry Smith MatScalar *aa=a->a; 206ac7a638eSSatish Balay 207ac7a638eSSatish Balay Mat B = baij->B; 208ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 209b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2103eda8832SBarry Smith MatScalar *ba=b->a; 211ac7a638eSSatish Balay 212b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 213b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2143eda8832SBarry Smith MatScalar *ap,*bap; 21580c1aa95SSatish Balay 216d64ed03dSBarry Smith PetscFunctionBegin; 21771fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1); 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 26290f02eecSBarry Smith if (!baij->donotstash) { 263ff2fd236SBarry Smith if (roworiented) { 264b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 265ff2fd236SBarry Smith } else { 266b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27090f02eecSBarry Smith } 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 27257b952d6SSatish Balay } 27357b952d6SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 277ab26458aSBarry Smith { 278ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 279dd6ea824SBarry Smith const PetscScalar *value; 280f15d580aSBarry Smith MatScalar *barray=baij->barray; 281273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 282dfbe8321SBarry Smith PetscErrorCode ierr; 283899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 284899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 285d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 286ab26458aSBarry Smith 287b16ae2b1SBarry Smith PetscFunctionBegin; 28830793edcSSatish Balay if(!barray) { 28982502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29082502324SSatish Balay baij->barray = barray; 29130793edcSSatish Balay } 29230793edcSSatish Balay 293ab26458aSBarry Smith if (roworiented) { 294ab26458aSBarry Smith stepval = (n-1)*bs; 295ab26458aSBarry Smith } else { 296ab26458aSBarry Smith stepval = (m-1)*bs; 297ab26458aSBarry Smith } 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 301e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 313ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 314ab26458aSBarry Smith } else { 315ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 316abef11f7SSatish Balay } 31747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31847513183SBarry Smith for (jj=0; jj<bs; jj++) { 31930793edcSSatish Balay *barray++ = *value++; 32047513183SBarry Smith } 32147513183SBarry Smith } 32230793edcSSatish Balay barray -=bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 328ab26458aSBarry Smith } 3295ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 331cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 332ab26458aSBarry Smith #endif 333ab26458aSBarry Smith else { 334ab26458aSBarry Smith if (mat->was_assembled) { 335ab26458aSBarry Smith if (!baij->colmap) { 336ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 337ab26458aSBarry Smith } 338a5eb4965SSatish Balay 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 341b24ad042SBarry Smith { PetscInt data; 3420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 343e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 344fa46199cSSatish Balay } 34548e59246SSatish Balay #else 346e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 347a5eb4965SSatish Balay #endif 34848e59246SSatish Balay #endif 349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3500f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 351fa46199cSSatish Balay col = (col - 1)/bs; 35248e59246SSatish Balay #else 353a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35448e59246SSatish Balay #endif 355ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 356ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357ab26458aSBarry Smith col = in[j]; 358ab26458aSBarry Smith } 359ab26458aSBarry Smith } 360ab26458aSBarry Smith else col = in[j]; 36197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 364d64ed03dSBarry Smith } else { 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 39971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 402e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 424e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 434e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 446b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 448b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 487e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 488e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 509e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 519e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 588e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 593e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 616e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 6567adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 657064f8208SBarry Smith *nrm = sqrt(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661fca92195SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr); 662d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6638a62d963SHong Zhang v = amat->a; jj = amat->j; 6648a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6658a62d963SHong Zhang for (j=0; j<bs; j++){ 6668a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6678a62d963SHong Zhang for (row=0; row<bs; row++){ 6688a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6698a62d963SHong Zhang } 6708a62d963SHong Zhang } 6718a62d963SHong Zhang jj++; 6728a62d963SHong Zhang } 6738a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6748a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6758a62d963SHong Zhang for (j=0; j<bs; j++){ 6768a62d963SHong Zhang col = bs*garray[*jj] + j; 6778a62d963SHong Zhang for (row=0; row<bs; row++){ 6788a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6798a62d963SHong Zhang } 6808a62d963SHong Zhang } 6818a62d963SHong Zhang jj++; 6828a62d963SHong Zhang } 683d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6848a62d963SHong Zhang *nrm = 0.0; 685d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6868a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6878a62d963SHong Zhang } 688fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6898a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 690577dd1f9SKris Buschelman PetscReal *sums; 691cb9801acSJed Brown ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr); 6928a62d963SHong Zhang sum = 0.0; 6938a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6948a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6958a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6968a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6978a62d963SHong Zhang for (i=0; i<nz; i++) { 6988a62d963SHong Zhang for (col=0; col<bs; col++){ 6998a62d963SHong Zhang for (row=0; row<bs; row++){ 7008a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7018a62d963SHong Zhang } 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7058a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7068a62d963SHong Zhang for (i=0; i<nz; i++) { 7078a62d963SHong Zhang for (col=0; col<bs; col++){ 7088a62d963SHong Zhang for (row=0; row<bs; row++){ 7098a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7108a62d963SHong Zhang } 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang for (row=0; row<bs; row++){ 7148a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7158a62d963SHong Zhang } 7168a62d963SHong Zhang } 7177adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 718577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 719e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet"); 720d64ed03dSBarry Smith } 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 722d6de1c52SSatish Balay } 72357b952d6SSatish Balay 724fef45726SSatish Balay /* 725fef45726SSatish Balay Creates the hash table, and sets the table 726fef45726SSatish Balay This table is created only once. 727fef45726SSatish Balay If new entried need to be added to the matrix 728fef45726SSatish Balay then the hash table has to be destroyed and 729fef45726SSatish Balay recreated. 730fef45726SSatish Balay */ 7314a2ae208SSatish Balay #undef __FUNCT__ 7324a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 733dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 734596b8d2eSBarry Smith { 735596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 736596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 737596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 738b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7396849ba73SBarry Smith PetscErrorCode ierr; 740fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 741899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 742b24ad042SBarry Smith PetscInt *HT,key; 7433eda8832SBarry Smith MatScalar **HD; 744329f5518SBarry Smith PetscReal tmp; 7456cf91177SBarry Smith #if defined(PETSC_USE_INFO) 746b24ad042SBarry Smith PetscInt ct=0,max=0; 7474a15367fSSatish Balay #endif 748fef45726SSatish Balay 749d64ed03dSBarry Smith PetscFunctionBegin; 750fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 751fef45726SSatish Balay 752fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 753fca92195SBarry Smith ht_size = baij->ht_size; 7540bdbc534SSatish Balay 755fef45726SSatish Balay /* Allocate Memory for Hash Table */ 756fca92195SBarry Smith ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr); 757fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 758fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 759b9e4cc15SSatish Balay HD = baij->hd; 760a07cd24cSSatish Balay HT = baij->ht; 761b9e4cc15SSatish Balay 762596b8d2eSBarry Smith /* Loop Over A */ 7630bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 764596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7650bdbc534SSatish Balay row = i+rstart; 7660bdbc534SSatish Balay col = aj[j]+cstart; 767596b8d2eSBarry Smith 768187ce0cbSSatish Balay key = row*Nbs + col + 1; 769fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 770fca92195SBarry Smith for (k=0; k<ht_size; k++){ 771fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 772fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 773fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 774596b8d2eSBarry Smith break; 7756cf91177SBarry Smith #if defined(PETSC_USE_INFO) 776187ce0cbSSatish Balay } else { 777187ce0cbSSatish Balay ct++; 778187ce0cbSSatish Balay #endif 779596b8d2eSBarry Smith } 780187ce0cbSSatish Balay } 7816cf91177SBarry Smith #if defined(PETSC_USE_INFO) 782187ce0cbSSatish Balay if (k> max) max = k; 783187ce0cbSSatish Balay #endif 784596b8d2eSBarry Smith } 785596b8d2eSBarry Smith } 786596b8d2eSBarry Smith /* Loop Over B */ 7870bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 788596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7890bdbc534SSatish Balay row = i+rstart; 7900bdbc534SSatish Balay col = garray[bj[j]]; 791187ce0cbSSatish Balay key = row*Nbs + col + 1; 792fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 793fca92195SBarry Smith for (k=0; k<ht_size; k++){ 794fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 795fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 796fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 797596b8d2eSBarry Smith break; 7986cf91177SBarry Smith #if defined(PETSC_USE_INFO) 799187ce0cbSSatish Balay } else { 800187ce0cbSSatish Balay ct++; 801187ce0cbSSatish Balay #endif 802596b8d2eSBarry Smith } 803187ce0cbSSatish Balay } 8046cf91177SBarry Smith #if defined(PETSC_USE_INFO) 805187ce0cbSSatish Balay if (k> max) max = k; 806187ce0cbSSatish Balay #endif 807596b8d2eSBarry Smith } 808596b8d2eSBarry Smith } 809596b8d2eSBarry Smith 810596b8d2eSBarry Smith /* Print Summary */ 8116cf91177SBarry Smith #if defined(PETSC_USE_INFO) 812fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 813596b8d2eSBarry Smith if (HT[i]) {j++;} 814c38d4ed2SBarry Smith } 8151e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 816187ce0cbSSatish Balay #endif 8173a40ed3dSBarry Smith PetscFunctionReturn(0); 818596b8d2eSBarry Smith } 81957b952d6SSatish Balay 8204a2ae208SSatish Balay #undef __FUNCT__ 8214a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 822dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 823bbb85fb3SSatish Balay { 824bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 825dfbe8321SBarry Smith PetscErrorCode ierr; 826b24ad042SBarry Smith PetscInt nstash,reallocs; 827bbb85fb3SSatish Balay InsertMode addv; 828bbb85fb3SSatish Balay 829bbb85fb3SSatish Balay PetscFunctionBegin; 830bbb85fb3SSatish Balay if (baij->donotstash) { 831bbb85fb3SSatish Balay PetscFunctionReturn(0); 832bbb85fb3SSatish Balay } 833bbb85fb3SSatish Balay 834bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8357adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 836e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 837bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 838bbb85fb3SSatish Balay 839d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8401e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8418798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8421e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 84346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8441e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 845bbb85fb3SSatish Balay PetscFunctionReturn(0); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay 8484a2ae208SSatish Balay #undef __FUNCT__ 8494a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 850dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 851bbb85fb3SSatish Balay { 852bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8546849ba73SBarry Smith PetscErrorCode ierr; 855b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 856e44c0bd4SBarry Smith PetscInt *row,*col; 857e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8583eda8832SBarry Smith MatScalar *val; 859bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 860b24ad042SBarry Smith PetscMPIInt n; 861bbb85fb3SSatish Balay 86291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 863bbb85fb3SSatish Balay PetscFunctionBegin; 864bbb85fb3SSatish Balay if (!baij->donotstash) { 865a2d1c673SSatish Balay while (1) { 8668798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 867a2d1c673SSatish Balay if (!flg) break; 868a2d1c673SSatish Balay 869bbb85fb3SSatish Balay for (i=0; i<n;) { 870bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 871bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 872bbb85fb3SSatish Balay if (j < n) ncols = j-i; 873bbb85fb3SSatish Balay else ncols = n-i; 874bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 87597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 876bbb85fb3SSatish Balay i = j; 877bbb85fb3SSatish Balay } 878bbb85fb3SSatish Balay } 8798798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 880a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 881a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 882a2d1c673SSatish Balay restore the original flags */ 883a2d1c673SSatish Balay r1 = baij->roworiented; 884a2d1c673SSatish Balay r2 = a->roworiented; 88591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8867c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8877c922b88SBarry Smith a->roworiented = PETSC_FALSE; 88891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 889a2d1c673SSatish Balay while (1) { 8908798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 891a2d1c673SSatish Balay if (!flg) break; 892a2d1c673SSatish Balay 893a2d1c673SSatish Balay for (i=0; i<n;) { 894a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 895a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 896a2d1c673SSatish Balay if (j < n) ncols = j-i; 897a2d1c673SSatish Balay else ncols = n-i; 89897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 899a2d1c673SSatish Balay i = j; 900a2d1c673SSatish Balay } 901a2d1c673SSatish Balay } 9028798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 903a2d1c673SSatish Balay baij->roworiented = r1; 904a2d1c673SSatish Balay a->roworiented = r2; 90591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 906bbb85fb3SSatish Balay } 907bbb85fb3SSatish Balay 908bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 909bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 910bbb85fb3SSatish Balay 911bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 912bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 913bbb85fb3SSatish Balay /* 914bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 915bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 916bbb85fb3SSatish Balay */ 917bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9187adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 919bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 920bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 921bbb85fb3SSatish Balay } 922bbb85fb3SSatish Balay } 923bbb85fb3SSatish Balay 924bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 925bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 926bbb85fb3SSatish Balay } 92791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 928bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 929bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 930bbb85fb3SSatish Balay 9316cf91177SBarry Smith #if defined(PETSC_USE_INFO) 932bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9331e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 934bbb85fb3SSatish Balay baij->ht_total_ct = 0; 935bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 936bbb85fb3SSatish Balay } 937bbb85fb3SSatish Balay #endif 938bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 939bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 940bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 941bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 942bbb85fb3SSatish Balay } 943bbb85fb3SSatish Balay 944fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 945606d414cSSatish Balay baij->rowvalues = 0; 946bbb85fb3SSatish Balay PetscFunctionReturn(0); 947bbb85fb3SSatish Balay } 94857b952d6SSatish Balay 9494a2ae208SSatish Balay #undef __FUNCT__ 9504a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9516849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 95257b952d6SSatish Balay { 95357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 954dfbe8321SBarry Smith PetscErrorCode ierr; 955b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 956d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 95732077d6dSBarry Smith PetscTruth iascii,isdraw; 958b0a32e0cSBarry Smith PetscViewer sviewer; 959f3ef73ceSBarry Smith PetscViewerFormat format; 96057b952d6SSatish Balay 961d64ed03dSBarry Smith PetscFunctionBegin; 9622692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9632692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 96432077d6dSBarry Smith if (iascii) { 965b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 966456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9674e220ebcSLois Curfman McInnes MatInfo info; 9687adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 969d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 97077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 971d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 972d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 973d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 97477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 975d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 97677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 977b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 97807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 97957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9803a40ed3dSBarry Smith PetscFunctionReturn(0); 981fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 98277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9833a40ed3dSBarry Smith PetscFunctionReturn(0); 98404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 98504929863SHong Zhang PetscFunctionReturn(0); 98657b952d6SSatish Balay } 98757b952d6SSatish Balay } 98857b952d6SSatish Balay 9890f5bd95cSBarry Smith if (isdraw) { 990b0a32e0cSBarry Smith PetscDraw draw; 99157b952d6SSatish Balay PetscTruth isnull; 992b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 993b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 99457b952d6SSatish Balay } 99557b952d6SSatish Balay 99657b952d6SSatish Balay if (size == 1) { 9977adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 99857b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 999d64ed03dSBarry Smith } else { 100057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 100157b952d6SSatish Balay Mat A; 100257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1003d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10043eda8832SBarry Smith MatScalar *a; 100557b952d6SSatish Balay 1006f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1007f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10087adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 100957b952d6SSatish Balay if (!rank) { 1010f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1011d64ed03dSBarry Smith } else { 1012f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 101357b952d6SSatish Balay } 1014f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1015d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 101652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 101757b952d6SSatish Balay 101857b952d6SSatish Balay /* copy over the A part */ 101957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 102057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1021b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 102257b952d6SSatish Balay 102357b952d6SSatish Balay for (i=0; i<mbs; i++) { 1024899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 102557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 102657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1027899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 102857b952d6SSatish Balay for (k=0; k<bs; k++) { 102997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1030cee3aa6bSSatish Balay col++; a += bs; 103157b952d6SSatish Balay } 103257b952d6SSatish Balay } 103357b952d6SSatish Balay } 103457b952d6SSatish Balay /* copy over the B part */ 103557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 103657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 103757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1038899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 104057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 104157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 104257b952d6SSatish Balay for (k=0; k<bs; k++) { 104397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1044cee3aa6bSSatish Balay col++; a += bs; 104557b952d6SSatish Balay } 104657b952d6SSatish Balay } 104757b952d6SSatish Balay } 1048606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10496d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10506d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 105155843e3eSBarry Smith /* 105255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1053b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 105455843e3eSBarry Smith */ 1055b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1056f14a1c24SBarry Smith if (!rank) { 10577adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10586831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 105957b952d6SSatish Balay } 1060b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 106157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 106257b952d6SSatish Balay } 10633a40ed3dSBarry Smith PetscFunctionReturn(0); 106457b952d6SSatish Balay } 106557b952d6SSatish Balay 10664a2ae208SSatish Balay #undef __FUNCT__ 10674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1068dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 106957b952d6SSatish Balay { 1070dfbe8321SBarry Smith PetscErrorCode ierr; 107132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 107257b952d6SSatish Balay 1073d64ed03dSBarry Smith PetscFunctionBegin; 10742692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 10752692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 10762692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 10772692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 107832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10797b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10805cd90555SBarry Smith } else { 108165e19b50SBarry Smith SETERRQ1(((PetscObject)mat)->comm,PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 108257b952d6SSatish Balay } 10833a40ed3dSBarry Smith PetscFunctionReturn(0); 108457b952d6SSatish Balay } 108557b952d6SSatish Balay 10864a2ae208SSatish Balay #undef __FUNCT__ 10874a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1088dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 108979bdfe76SSatish Balay { 109079bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1091dfbe8321SBarry Smith PetscErrorCode ierr; 109279bdfe76SSatish Balay 1093d64ed03dSBarry Smith PetscFunctionBegin; 1094aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1095d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 109679bdfe76SSatish Balay #endif 10978798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 10988798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 109979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 110079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1101aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11029c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 110348e59246SSatish Balay #else 110405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 110548e59246SSatish Balay #endif 110605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1107606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1108606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1109fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 111005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1111fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1112899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1113606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1114901853e0SKris Buschelman 1115dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1116901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1117901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1118901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1119901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1120aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1121901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1122901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11233a40ed3dSBarry Smith PetscFunctionReturn(0); 112479bdfe76SSatish Balay } 112579bdfe76SSatish Balay 11264a2ae208SSatish Balay #undef __FUNCT__ 11274a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1128dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1129cee3aa6bSSatish Balay { 1130cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1131dfbe8321SBarry Smith PetscErrorCode ierr; 1132b24ad042SBarry Smith PetscInt nt; 1133cee3aa6bSSatish Balay 1134d64ed03dSBarry Smith PetscFunctionBegin; 1135e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1136e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1137e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1138e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1139ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1140f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1141ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1142f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11433a40ed3dSBarry Smith PetscFunctionReturn(0); 1144cee3aa6bSSatish Balay } 1145cee3aa6bSSatish Balay 11464a2ae208SSatish Balay #undef __FUNCT__ 11474a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1148dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1149cee3aa6bSSatish Balay { 1150cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1151dfbe8321SBarry Smith PetscErrorCode ierr; 1152d64ed03dSBarry Smith 1153d64ed03dSBarry Smith PetscFunctionBegin; 1154ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1155f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1156ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1157f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11583a40ed3dSBarry Smith PetscFunctionReturn(0); 1159cee3aa6bSSatish Balay } 1160cee3aa6bSSatish Balay 11614a2ae208SSatish Balay #undef __FUNCT__ 11624a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1163dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1164cee3aa6bSSatish Balay { 1165cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1166dfbe8321SBarry Smith PetscErrorCode ierr; 1167a5ff213dSBarry Smith PetscTruth merged; 1168cee3aa6bSSatish Balay 1169d64ed03dSBarry Smith PetscFunctionBegin; 1170a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1171cee3aa6bSSatish Balay /* do nondiagonal part */ 11727c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1173a5ff213dSBarry Smith if (!merged) { 1174cee3aa6bSSatish Balay /* send it on its way */ 1175ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1176cee3aa6bSSatish Balay /* do local part */ 11777c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1178cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1179a5ff213dSBarry Smith /* inserted in yy until the next line */ 1180ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1181a5ff213dSBarry Smith } else { 1182a5ff213dSBarry Smith /* do local part */ 1183a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1184a5ff213dSBarry Smith /* send it on its way */ 1185ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1186a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1187ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1188a5ff213dSBarry Smith } 11893a40ed3dSBarry Smith PetscFunctionReturn(0); 1190cee3aa6bSSatish Balay } 1191cee3aa6bSSatish Balay 11924a2ae208SSatish Balay #undef __FUNCT__ 11934a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1194dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1195cee3aa6bSSatish Balay { 1196cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1197dfbe8321SBarry Smith PetscErrorCode ierr; 1198cee3aa6bSSatish Balay 1199d64ed03dSBarry Smith PetscFunctionBegin; 1200cee3aa6bSSatish Balay /* do nondiagonal part */ 12017c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1202cee3aa6bSSatish Balay /* send it on its way */ 1203ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1204cee3aa6bSSatish Balay /* do local part */ 12057c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1206cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1207cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1208cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1209ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12103a40ed3dSBarry Smith PetscFunctionReturn(0); 1211cee3aa6bSSatish Balay } 1212cee3aa6bSSatish Balay 1213cee3aa6bSSatish Balay /* 1214cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1215cee3aa6bSSatish Balay diagonal block 1216cee3aa6bSSatish Balay */ 12174a2ae208SSatish Balay #undef __FUNCT__ 12184a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1219dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1220cee3aa6bSSatish Balay { 1221cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1222dfbe8321SBarry Smith PetscErrorCode ierr; 1223d64ed03dSBarry Smith 1224d64ed03dSBarry Smith PetscFunctionBegin; 1225e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12263a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12273a40ed3dSBarry Smith PetscFunctionReturn(0); 1228cee3aa6bSSatish Balay } 1229cee3aa6bSSatish Balay 12304a2ae208SSatish Balay #undef __FUNCT__ 12314a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1232f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1233cee3aa6bSSatish Balay { 1234cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1235dfbe8321SBarry Smith PetscErrorCode ierr; 1236d64ed03dSBarry Smith 1237d64ed03dSBarry Smith PetscFunctionBegin; 1238f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1239f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12403a40ed3dSBarry Smith PetscFunctionReturn(0); 1241cee3aa6bSSatish Balay } 1242026e39d0SSatish Balay 12434a2ae208SSatish Balay #undef __FUNCT__ 12444a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1245b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1246acdf5bf4SSatish Balay { 1247acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 124887828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12496849ba73SBarry Smith PetscErrorCode ierr; 1250d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1251d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1252899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1253acdf5bf4SSatish Balay 1254d64ed03dSBarry Smith PetscFunctionBegin; 1255e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1256e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1257acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1258acdf5bf4SSatish Balay 1259acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1260acdf5bf4SSatish Balay /* 1261acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1262acdf5bf4SSatish Balay */ 1263acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1264b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1265bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1266acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1267acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1268acdf5bf4SSatish Balay } 1269fca92195SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1270acdf5bf4SSatish Balay } 1271d9d09a02SSatish Balay lrow = row - brstart; 1272acdf5bf4SSatish Balay 1273acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1274acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1275acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1276f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1277f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1278acdf5bf4SSatish Balay nztot = nzA + nzB; 1279acdf5bf4SSatish Balay 1280acdf5bf4SSatish Balay cmap = mat->garray; 1281acdf5bf4SSatish Balay if (v || idx) { 1282acdf5bf4SSatish Balay if (nztot) { 1283acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1284b24ad042SBarry Smith PetscInt imark = -1; 1285acdf5bf4SSatish Balay if (v) { 1286acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1287acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1288d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1289acdf5bf4SSatish Balay else break; 1290acdf5bf4SSatish Balay } 1291acdf5bf4SSatish Balay imark = i; 1292acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1293acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1294acdf5bf4SSatish Balay } 1295acdf5bf4SSatish Balay if (idx) { 1296acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1297acdf5bf4SSatish Balay if (imark > -1) { 1298acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1299bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1300acdf5bf4SSatish Balay } 1301acdf5bf4SSatish Balay } else { 1302acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1303d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1304d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1305acdf5bf4SSatish Balay else break; 1306acdf5bf4SSatish Balay } 1307acdf5bf4SSatish Balay imark = i; 1308acdf5bf4SSatish Balay } 1309d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1310d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1311acdf5bf4SSatish Balay } 1312d64ed03dSBarry Smith } else { 1313d212a18eSSatish Balay if (idx) *idx = 0; 1314d212a18eSSatish Balay if (v) *v = 0; 1315d212a18eSSatish Balay } 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay *nz = nztot; 1318f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1319f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13203a40ed3dSBarry Smith PetscFunctionReturn(0); 1321acdf5bf4SSatish Balay } 1322acdf5bf4SSatish Balay 13234a2ae208SSatish Balay #undef __FUNCT__ 13244a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1325b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1326acdf5bf4SSatish Balay { 1327acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1328d64ed03dSBarry Smith 1329d64ed03dSBarry Smith PetscFunctionBegin; 1330e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1331acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13323a40ed3dSBarry Smith PetscFunctionReturn(0); 1333acdf5bf4SSatish Balay } 1334acdf5bf4SSatish Balay 13354a2ae208SSatish Balay #undef __FUNCT__ 13364a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1337dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 133858667388SSatish Balay { 133958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1340dfbe8321SBarry Smith PetscErrorCode ierr; 1341d64ed03dSBarry Smith 1342d64ed03dSBarry Smith PetscFunctionBegin; 134358667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 134458667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13453a40ed3dSBarry Smith PetscFunctionReturn(0); 134658667388SSatish Balay } 13470ac07820SSatish Balay 13484a2ae208SSatish Balay #undef __FUNCT__ 13494a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1350dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13510ac07820SSatish Balay { 13524e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13534e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1354dfbe8321SBarry Smith PetscErrorCode ierr; 1355329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13560ac07820SSatish Balay 1357d64ed03dSBarry Smith PetscFunctionBegin; 1358d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13594e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13600e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1361de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13624e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13630e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1364de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13650ac07820SSatish Balay if (flag == MAT_LOCAL) { 13664e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13674e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13684e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13694e220ebcSLois Curfman McInnes info->memory = isend[3]; 13704e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13710ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13727adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13734e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13744e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13754e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13764e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13774e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13780ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13797adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13804e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13814e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13824e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13834e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13844e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1385d41123aaSBarry Smith } else { 138665e19b50SBarry Smith SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 13870ac07820SSatish Balay } 13884e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 13894e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 13904e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 13913a40ed3dSBarry Smith PetscFunctionReturn(0); 13920ac07820SSatish Balay } 13930ac07820SSatish Balay 13944a2ae208SSatish Balay #undef __FUNCT__ 13954a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 13964e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 139758667388SSatish Balay { 139858667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1399dfbe8321SBarry Smith PetscErrorCode ierr; 140058667388SSatish Balay 1401d64ed03dSBarry Smith PetscFunctionBegin; 140212c028f9SKris Buschelman switch (op) { 1403512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 140412c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 140528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1406a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 140712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14084e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14094e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 141012c028f9SKris Buschelman break; 141112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14124e0d8c25SBarry Smith a->roworiented = flg; 14134e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14144e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 141512c028f9SKris Buschelman break; 14164e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1417290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 141812c028f9SKris Buschelman break; 141912c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14204e0d8c25SBarry Smith a->donotstash = flg; 142112c028f9SKris Buschelman break; 142212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14234e0d8c25SBarry Smith a->ht_flag = flg; 142412c028f9SKris Buschelman break; 142577e54ba9SKris Buschelman case MAT_SYMMETRIC: 142677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14272188ac68SBarry Smith case MAT_HERMITIAN: 14282188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14294e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 143077e54ba9SKris Buschelman break; 143112c028f9SKris Buschelman default: 143265e19b50SBarry Smith SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op); 1433d64ed03dSBarry Smith } 14343a40ed3dSBarry Smith PetscFunctionReturn(0); 143558667388SSatish Balay } 143658667388SSatish Balay 14374a2ae208SSatish Balay #undef __FUNCT__ 14384a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1439fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14400ac07820SSatish Balay { 14410ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14420ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14430ac07820SSatish Balay Mat B; 1444dfbe8321SBarry Smith PetscErrorCode ierr; 1445d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1446d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14473eda8832SBarry Smith MatScalar *a; 14480ac07820SSatish Balay 1449d64ed03dSBarry Smith PetscFunctionBegin; 1450e7e72b3dSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1451fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14527adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1453d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14547adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1455d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1456fc4dec0aSBarry Smith } else { 1457fc4dec0aSBarry Smith B = *matout; 1458fc4dec0aSBarry Smith } 14590ac07820SSatish Balay 14600ac07820SSatish Balay /* copy over the A part */ 14610ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14620ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1463b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14640ac07820SSatish Balay 14650ac07820SSatish Balay for (i=0; i<mbs; i++) { 1466899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14670ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14680ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1469899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14700ac07820SSatish Balay for (k=0; k<bs; k++) { 147197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14720ac07820SSatish Balay col++; a += bs; 14730ac07820SSatish Balay } 14740ac07820SSatish Balay } 14750ac07820SSatish Balay } 14760ac07820SSatish Balay /* copy over the B part */ 14770ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14780ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14790ac07820SSatish Balay for (i=0; i<mbs; i++) { 1480899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14810ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14820ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 14830ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 14840ac07820SSatish Balay for (k=0; k<bs; k++) { 148597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14860ac07820SSatish Balay col++; a += bs; 14870ac07820SSatish Balay } 14880ac07820SSatish Balay } 14890ac07820SSatish Balay } 1490606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 14910ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14920ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14930ac07820SSatish Balay 1494815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 14950ac07820SSatish Balay *matout = B; 14960ac07820SSatish Balay } else { 1497273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 14980ac07820SSatish Balay } 14993a40ed3dSBarry Smith PetscFunctionReturn(0); 15000ac07820SSatish Balay } 15010e95ebc0SSatish Balay 15024a2ae208SSatish Balay #undef __FUNCT__ 15034a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1504dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15050e95ebc0SSatish Balay { 150636c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 150736c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1508dfbe8321SBarry Smith PetscErrorCode ierr; 1509b24ad042SBarry Smith PetscInt s1,s2,s3; 15100e95ebc0SSatish Balay 1511d64ed03dSBarry Smith PetscFunctionBegin; 151236c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 151336c4a09eSSatish Balay if (rr) { 151436c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1515e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 151636c4a09eSSatish Balay /* Overlap communication with computation. */ 1517ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 151836c4a09eSSatish Balay } 15190e95ebc0SSatish Balay if (ll) { 15200e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1521e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1522a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15230e95ebc0SSatish Balay } 152436c4a09eSSatish Balay /* scale the diagonal block */ 152536c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 152636c4a09eSSatish Balay 152736c4a09eSSatish Balay if (rr) { 152836c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1529ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1530a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 153136c4a09eSSatish Balay } 153236c4a09eSSatish Balay 15333a40ed3dSBarry Smith PetscFunctionReturn(0); 15340e95ebc0SSatish Balay } 15350e95ebc0SSatish Balay 15364a2ae208SSatish Balay #undef __FUNCT__ 15374a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1538f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15390ac07820SSatish Balay { 15400ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15416849ba73SBarry Smith PetscErrorCode ierr; 1542b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1543d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1544b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1545b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15467adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1547d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15487adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15490ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15500ac07820SSatish Balay MPI_Status recv_status,*send_status; 15516543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15526543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15536543fbbaSBarry Smith #endif 15540ac07820SSatish Balay 1555d64ed03dSBarry Smith PetscFunctionBegin; 15560ac07820SSatish Balay /* first count number of contributors to each processor */ 1557b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1558b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1559b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15606543fbbaSBarry Smith j = 0; 15610ac07820SSatish Balay for (i=0; i<N; i++) { 15626543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15636543fbbaSBarry Smith lastidx = idx; 15646543fbbaSBarry Smith for (; j<size; j++) { 1565357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15666543fbbaSBarry Smith nprocs[2*j]++; 15676543fbbaSBarry Smith nprocs[2*j+1] = 1; 15686543fbbaSBarry Smith owner[i] = j; 15696543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15706543fbbaSBarry Smith found = PETSC_TRUE; 15716543fbbaSBarry Smith #endif 15726543fbbaSBarry Smith break; 15730ac07820SSatish Balay } 15740ac07820SSatish Balay } 15756543fbbaSBarry Smith #if defined(PETSC_DEBUG) 1576e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15776543fbbaSBarry Smith found = PETSC_FALSE; 15786543fbbaSBarry Smith #endif 15790ac07820SSatish Balay } 1580c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15810ac07820SSatish Balay 15820ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1583c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 15840ac07820SSatish Balay 15850ac07820SSatish Balay /* post receives: */ 1586b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1587b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 15880ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1589b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 15900ac07820SSatish Balay } 15910ac07820SSatish Balay 15920ac07820SSatish Balay /* do sends: 15930ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 15940ac07820SSatish Balay the ith processor 15950ac07820SSatish Balay */ 1596b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1597b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1598b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 15990ac07820SSatish Balay starts[0] = 0; 1600c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16010ac07820SSatish Balay for (i=0; i<N; i++) { 16020ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16030ac07820SSatish Balay } 16040ac07820SSatish Balay 16050ac07820SSatish Balay starts[0] = 0; 1606c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16070ac07820SSatish Balay count = 0; 16080ac07820SSatish Balay for (i=0; i<size; i++) { 1609c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1610b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16110ac07820SSatish Balay } 16120ac07820SSatish Balay } 1613606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16140ac07820SSatish Balay 1615357c27ecSBarry Smith base = owners[rank]; 16160ac07820SSatish Balay 16170ac07820SSatish Balay /* wait on receives */ 1618fca92195SBarry Smith ierr = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr); 1619fca92195SBarry Smith count = nrecvs; 1620fca92195SBarry Smith slen = 0; 16210ac07820SSatish Balay while (count) { 1622ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16230ac07820SSatish Balay /* unpack receives into our local space */ 1624b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16250ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16260ac07820SSatish Balay lens[imdex] = n; 16270ac07820SSatish Balay slen += n; 16280ac07820SSatish Balay count--; 16290ac07820SSatish Balay } 1630606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16310ac07820SSatish Balay 16320ac07820SSatish Balay /* move the data into the send scatter */ 1633b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16340ac07820SSatish Balay count = 0; 16350ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16360ac07820SSatish Balay values = rvalues + i*nmax; 16370ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16380ac07820SSatish Balay lrows[count++] = values[j] - base; 16390ac07820SSatish Balay } 16400ac07820SSatish Balay } 1641606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1642fca92195SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 1643606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1644606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16450ac07820SSatish Balay 16460ac07820SSatish Balay /* actually zap the local rows */ 164772dacd9aSBarry Smith /* 164872dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1649a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 165072dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 165172dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 165272dacd9aSBarry Smith 165372dacd9aSBarry Smith */ 16549c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1655f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1656d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1657f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1658f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1659f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1660e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1661512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1662a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1663a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1664f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1665a07cd24cSSatish Balay } 1666a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1667a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16689c957beeSSatish Balay } else { 1669f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1670a07cd24cSSatish Balay } 16719c957beeSSatish Balay 1672606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1673a07cd24cSSatish Balay 16740ac07820SSatish Balay /* wait on sends */ 16750ac07820SSatish Balay if (nsends) { 167682502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1677ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1678606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16790ac07820SSatish Balay } 1680606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1681606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 16820ac07820SSatish Balay 16833a40ed3dSBarry Smith PetscFunctionReturn(0); 16840ac07820SSatish Balay } 168572dacd9aSBarry Smith 16864a2ae208SSatish Balay #undef __FUNCT__ 16874a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1688dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1689bb5a7306SBarry Smith { 1690bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1691dfbe8321SBarry Smith PetscErrorCode ierr; 1692d64ed03dSBarry Smith 1693d64ed03dSBarry Smith PetscFunctionBegin; 1694bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 16953a40ed3dSBarry Smith PetscFunctionReturn(0); 1696bb5a7306SBarry Smith } 1697bb5a7306SBarry Smith 16986849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 16990ac07820SSatish Balay 17004a2ae208SSatish Balay #undef __FUNCT__ 17014a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1702dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17037fc3c18eSBarry Smith { 17047fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17057fc3c18eSBarry Smith Mat a,b,c,d; 17067fc3c18eSBarry Smith PetscTruth flg; 1707dfbe8321SBarry Smith PetscErrorCode ierr; 17087fc3c18eSBarry Smith 17097fc3c18eSBarry Smith PetscFunctionBegin; 17107fc3c18eSBarry Smith a = matA->A; b = matA->B; 17117fc3c18eSBarry Smith c = matB->A; d = matB->B; 17127fc3c18eSBarry Smith 17137fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1714abc0a331SBarry Smith if (flg) { 17157fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17167fc3c18eSBarry Smith } 17177adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17187fc3c18eSBarry Smith PetscFunctionReturn(0); 17197fc3c18eSBarry Smith } 17207fc3c18eSBarry Smith 17213c896bc6SHong Zhang #undef __FUNCT__ 17223c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17233c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17243c896bc6SHong Zhang { 17253c896bc6SHong Zhang PetscErrorCode ierr; 17263c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17273c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17283c896bc6SHong Zhang 17293c896bc6SHong Zhang PetscFunctionBegin; 17303c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17313c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17323c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17333c896bc6SHong Zhang } else { 17343c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17353c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17363c896bc6SHong Zhang } 17373c896bc6SHong Zhang PetscFunctionReturn(0); 17383c896bc6SHong Zhang } 1739273d9f13SBarry Smith 17404a2ae208SSatish Balay #undef __FUNCT__ 17414a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1742dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1743273d9f13SBarry Smith { 1744dfbe8321SBarry Smith PetscErrorCode ierr; 1745273d9f13SBarry Smith 1746273d9f13SBarry Smith PetscFunctionBegin; 1747db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1748273d9f13SBarry Smith PetscFunctionReturn(0); 1749273d9f13SBarry Smith } 1750273d9f13SBarry Smith 17514fe895cdSHong Zhang #undef __FUNCT__ 17524fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17534fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17544fe895cdSHong Zhang { 17554fe895cdSHong Zhang PetscErrorCode ierr; 17564fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17574fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17584fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17594fe895cdSHong Zhang 17604fe895cdSHong Zhang PetscFunctionBegin; 17614fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17624fe895cdSHong Zhang PetscScalar alpha = a; 17634fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17644fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17650805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17664fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17674fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17684fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17690805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17704fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17714fe895cdSHong Zhang } else { 17724fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17734fe895cdSHong Zhang } 17744fe895cdSHong Zhang PetscFunctionReturn(0); 17754fe895cdSHong Zhang } 17764fe895cdSHong Zhang 177799cafbc1SBarry Smith #undef __FUNCT__ 177841c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 177941c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 178041c166b1SJed Brown { 178141c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1782829b6ff0SJed Brown PetscInt rbs,cbs; 178341c166b1SJed Brown PetscErrorCode ierr; 178441c166b1SJed Brown 178541c166b1SJed Brown PetscFunctionBegin; 178641c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 178741c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 1788829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 1789829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1790e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs); 1791e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs); 179241c166b1SJed Brown PetscFunctionReturn(0); 179341c166b1SJed Brown } 179441c166b1SJed Brown 179541c166b1SJed Brown #undef __FUNCT__ 179699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 179799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 179899cafbc1SBarry Smith { 179999cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180099cafbc1SBarry Smith PetscErrorCode ierr; 180199cafbc1SBarry Smith 180299cafbc1SBarry Smith PetscFunctionBegin; 180399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180599cafbc1SBarry Smith PetscFunctionReturn(0); 180699cafbc1SBarry Smith } 180799cafbc1SBarry Smith 180899cafbc1SBarry Smith #undef __FUNCT__ 180999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181199cafbc1SBarry Smith { 181299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181399cafbc1SBarry Smith PetscErrorCode ierr; 181499cafbc1SBarry Smith 181599cafbc1SBarry Smith PetscFunctionBegin; 181699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 181799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 181899cafbc1SBarry Smith PetscFunctionReturn(0); 181999cafbc1SBarry Smith } 182099cafbc1SBarry Smith 182182094794SBarry Smith #undef __FUNCT__ 182282094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18234aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18244aa3045dSJed Brown { 18254aa3045dSJed Brown PetscErrorCode ierr; 18264aa3045dSJed Brown IS iscol_local; 18274aa3045dSJed Brown PetscInt csize; 18284aa3045dSJed Brown 18294aa3045dSJed Brown PetscFunctionBegin; 18304aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1831b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1832b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1833e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1834b79d0421SJed Brown } else { 18354aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1836b79d0421SJed Brown } 18374aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1838b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1839b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18404aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1841b79d0421SJed Brown } 18424aa3045dSJed Brown PetscFunctionReturn(0); 18434aa3045dSJed Brown } 18444aa3045dSJed Brown 18454aa3045dSJed Brown #undef __FUNCT__ 18464aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 184782094794SBarry Smith /* 184882094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 184982094794SBarry Smith in local and then by concatenating the local matrices the end result. 185082094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 185182094794SBarry Smith */ 18524aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 185382094794SBarry Smith { 185482094794SBarry Smith PetscErrorCode ierr; 185582094794SBarry Smith PetscMPIInt rank,size; 185682094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 185782094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 185882094794SBarry Smith Mat *local,M,Mreuse; 185982094794SBarry Smith MatScalar *vwork,*aa; 186082094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 186182094794SBarry Smith Mat_SeqBAIJ *aij; 186282094794SBarry Smith 186382094794SBarry Smith 186482094794SBarry Smith PetscFunctionBegin; 186582094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 186682094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 186782094794SBarry Smith 186882094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 186982094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 1870e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 187182094794SBarry Smith local = &Mreuse; 187282094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 187382094794SBarry Smith } else { 187482094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187582094794SBarry Smith Mreuse = *local; 187682094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 187782094794SBarry Smith } 187882094794SBarry Smith 187982094794SBarry Smith /* 188082094794SBarry Smith m - number of local rows 188182094794SBarry Smith n - number of columns (same on all processors) 188282094794SBarry Smith rstart - first row in new global matrix generated 188382094794SBarry Smith */ 188482094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188582094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 188682094794SBarry Smith m = m/bs; 188782094794SBarry Smith n = n/bs; 188882094794SBarry Smith 188982094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 189082094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 189182094794SBarry Smith ii = aij->i; 189282094794SBarry Smith jj = aij->j; 189382094794SBarry Smith 189482094794SBarry Smith /* 189582094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 189682094794SBarry Smith portions of the matrix in order to do correct preallocation 189782094794SBarry Smith */ 189882094794SBarry Smith 189982094794SBarry Smith /* first get start and end of "diagonal" columns */ 190082094794SBarry Smith if (csize == PETSC_DECIDE) { 190182094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 190282094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 190382094794SBarry Smith nlocal = m; 190482094794SBarry Smith } else { 190582094794SBarry Smith nlocal = n/size + ((n % size) > rank); 190682094794SBarry Smith } 190782094794SBarry Smith } else { 190882094794SBarry Smith nlocal = csize/bs; 190982094794SBarry Smith } 191082094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 191182094794SBarry Smith rstart = rend - nlocal; 191265e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191382094794SBarry Smith 191482094794SBarry Smith /* next, compute all the lengths */ 191582094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 191682094794SBarry Smith olens = dlens + m; 191782094794SBarry Smith for (i=0; i<m; i++) { 191882094794SBarry Smith jend = ii[i+1] - ii[i]; 191982094794SBarry Smith olen = 0; 192082094794SBarry Smith dlen = 0; 192182094794SBarry Smith for (j=0; j<jend; j++) { 192282094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192382094794SBarry Smith else dlen++; 192482094794SBarry Smith jj++; 192582094794SBarry Smith } 192682094794SBarry Smith olens[i] = olen; 192782094794SBarry Smith dlens[i] = dlen; 192882094794SBarry Smith } 192982094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 193082094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 193182094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193282094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193382094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 193482094794SBarry Smith } else { 193582094794SBarry Smith PetscInt ml,nl; 193682094794SBarry Smith 193782094794SBarry Smith M = *newmat; 193882094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 1939e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 194082094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 194182094794SBarry Smith /* 194282094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194382094794SBarry Smith rather than the slower MatSetValues(). 194482094794SBarry Smith */ 194582094794SBarry Smith M->was_assembled = PETSC_TRUE; 194682094794SBarry Smith M->assembled = PETSC_FALSE; 194782094794SBarry Smith } 194882094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 194982094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 195082094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195182094794SBarry Smith ii = aij->i; 195282094794SBarry Smith jj = aij->j; 195382094794SBarry Smith aa = aij->a; 195482094794SBarry Smith for (i=0; i<m; i++) { 195582094794SBarry Smith row = rstart/bs + i; 195682094794SBarry Smith nz = ii[i+1] - ii[i]; 195782094794SBarry Smith cwork = jj; jj += nz; 195882094794SBarry Smith vwork = aa; aa += nz; 195982094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 196082094794SBarry Smith } 196182094794SBarry Smith 196282094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196382094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196482094794SBarry Smith *newmat = M; 196582094794SBarry Smith 196682094794SBarry Smith /* save submatrix used in processor for next request */ 196782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196882094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 196982094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 197082094794SBarry Smith } 197182094794SBarry Smith 197282094794SBarry Smith PetscFunctionReturn(0); 197382094794SBarry Smith } 197482094794SBarry Smith 197582094794SBarry Smith #undef __FUNCT__ 197682094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 197782094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 197882094794SBarry Smith { 197982094794SBarry Smith MPI_Comm comm,pcomm; 198082094794SBarry Smith PetscInt first,local_size,nrows; 198182094794SBarry Smith const PetscInt *rows; 1982dbf0e21dSBarry Smith PetscMPIInt size; 198382094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 198482094794SBarry Smith PetscErrorCode ierr; 198582094794SBarry Smith 198682094794SBarry Smith PetscFunctionBegin; 198782094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 198882094794SBarry Smith /* make a collective version of 'rowp' */ 198982094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 199082094794SBarry Smith if (pcomm==comm) { 199182094794SBarry Smith crowp = rowp; 199282094794SBarry Smith } else { 199382094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 199482094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 199582094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 199682094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 199782094794SBarry Smith } 199882094794SBarry Smith /* collect the global row permutation and invert it */ 199982094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 200082094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 200182094794SBarry Smith if (pcomm!=comm) { 200282094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200382094794SBarry Smith } 200482094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 200582094794SBarry Smith /* get the local target indices */ 200682094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 200782094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 200882094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 200982094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 201082094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 201182094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201282094794SBarry Smith /* the column permutation is so much easier; 201382094794SBarry Smith make a local version of 'colp' and invert it */ 201482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2015dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2016dbf0e21dSBarry Smith if (size==1) { 201782094794SBarry Smith lcolp = colp; 201882094794SBarry Smith } else { 201982094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 202082094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 202182094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202282094794SBarry Smith } 2023dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 202482094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20254aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2026dbf0e21dSBarry Smith if (size>1) { 202782094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 202882094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 202982094794SBarry Smith } 203082094794SBarry Smith /* now we just get the submatrix */ 20314aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203282094794SBarry Smith /* clean up */ 203382094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 203482094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 203582094794SBarry Smith PetscFunctionReturn(0); 203682094794SBarry Smith } 203782094794SBarry Smith 20388c7482ecSBarry Smith #undef __FUNCT__ 20398c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20408c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20418c7482ecSBarry Smith { 20428c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20438c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20448c7482ecSBarry Smith 20458c7482ecSBarry Smith PetscFunctionBegin; 20468c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20478c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20488c7482ecSBarry Smith PetscFunctionReturn(0); 20498c7482ecSBarry Smith } 20508c7482ecSBarry Smith 2051f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2052f6d58c54SBarry Smith 2053f6d58c54SBarry Smith #undef __FUNCT__ 2054f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2055f6d58c54SBarry Smith /* 2056f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2057f6d58c54SBarry Smith */ 2058f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2059f6d58c54SBarry Smith { 2060f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2061f6d58c54SBarry Smith PetscErrorCode ierr; 2062f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2063f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2064f6d58c54SBarry Smith const PetscInt *is; 2065f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2066f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2067f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2068f6d58c54SBarry Smith IS *isa; 2069f6d58c54SBarry Smith PetscTruth done,flg; 2070f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2071f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2072f6d58c54SBarry Smith 2073f6d58c54SBarry Smith PetscFunctionBegin; 2074e7e72b3dSBarry Smith if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2075e7e72b3dSBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2076f6d58c54SBarry Smith 2077f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2078f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2079f6d58c54SBarry Smith M = mat->rmap->n/bs; 2080f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2081f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2082f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2083f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2084f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2085f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2086f6d58c54SBarry Smith 2087f6d58c54SBarry Smith c->ncolors = nis; 2088f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2089f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2090f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2091f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2092f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2093f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2094f6d58c54SBarry Smith 2095f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2096f6d58c54SBarry Smith if (!baij->colmap) { 2097f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2098f6d58c54SBarry Smith } 2099f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2100f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2101f6d58c54SBarry Smith 2102f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2103f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2104f6d58c54SBarry Smith 2105f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2106f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2107f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2108f6d58c54SBarry Smith c->ncolumns[i] = n; 2109f6d58c54SBarry Smith if (n) { 2110f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2111f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2112f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2113f6d58c54SBarry Smith } else { 2114f6d58c54SBarry Smith c->columns[i] = 0; 2115f6d58c54SBarry Smith } 2116f6d58c54SBarry Smith 2117f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2118f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2119f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2120fca92195SBarry Smith ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr); 2121f6d58c54SBarry Smith 2122f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2123f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2124f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2125f6d58c54SBarry Smith if (!nctot) { 2126f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2127f6d58c54SBarry Smith } 2128f6d58c54SBarry Smith 2129f6d58c54SBarry Smith disp[0] = 0; 2130f6d58c54SBarry Smith for (j=1; j<size; j++) { 2131f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2132f6d58c54SBarry Smith } 2133f6d58c54SBarry Smith 2134f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2135f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2136f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2137fca92195SBarry Smith ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr); 2138f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2139f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2140f6d58c54SBarry Smith nctot = n; 2141f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2142f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2143f6d58c54SBarry Smith } else { 2144e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2145f6d58c54SBarry Smith } 2146f6d58c54SBarry Smith 2147f6d58c54SBarry Smith /* 2148f6d58c54SBarry Smith Mark all rows affect by these columns 2149f6d58c54SBarry Smith */ 2150f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2151f6d58c54SBarry Smith flg = PETSC_FALSE; 2152f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2153f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2154f6d58c54SBarry Smith /* crude, fast version */ 2155f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2156f6d58c54SBarry Smith /* loop over columns*/ 2157f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2158f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2159f6d58c54SBarry Smith col = ltog[cols[j]]; 2160f6d58c54SBarry Smith } else { 2161f6d58c54SBarry Smith col = cols[j]; 2162f6d58c54SBarry Smith } 2163f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2164f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2165f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2166f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2167f6d58c54SBarry Smith } else { 2168f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2169cb9801acSJed Brown ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2170f6d58c54SBarry Smith colb --; 2171f6d58c54SBarry Smith #else 2172f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2173f6d58c54SBarry Smith #endif 2174f6d58c54SBarry Smith if (colb == -1) { 2175f6d58c54SBarry Smith m = 0; 2176f6d58c54SBarry Smith } else { 2177f6d58c54SBarry Smith colb = colb/bs; 2178f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2179f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2180f6d58c54SBarry Smith } 2181f6d58c54SBarry Smith } 2182f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2183f6d58c54SBarry Smith for (k=0; k<m; k++) { 2184f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2185f6d58c54SBarry Smith } 2186f6d58c54SBarry Smith } 2187f6d58c54SBarry Smith 2188f6d58c54SBarry Smith /* count the number of hits */ 2189f6d58c54SBarry Smith nrows = 0; 2190f6d58c54SBarry Smith for (j=0; j<M; j++) { 2191f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2192f6d58c54SBarry Smith } 2193f6d58c54SBarry Smith c->nrows[i] = nrows; 2194f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2195f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2196f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2197f6d58c54SBarry Smith nrows = 0; 2198f6d58c54SBarry Smith for (j=0; j<M; j++) { 2199f6d58c54SBarry Smith if (rowhit[j]) { 2200f6d58c54SBarry Smith c->rows[i][nrows] = j; 2201f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2202f6d58c54SBarry Smith nrows++; 2203f6d58c54SBarry Smith } 2204f6d58c54SBarry Smith } 2205f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2206f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2207f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2208f6d58c54SBarry Smith rowhit[M] = M; 2209f6d58c54SBarry Smith nrows = 0; 2210f6d58c54SBarry Smith /* loop over columns*/ 2211f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2212f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2213f6d58c54SBarry Smith col = ltog[cols[j]]; 2214f6d58c54SBarry Smith } else { 2215f6d58c54SBarry Smith col = cols[j]; 2216f6d58c54SBarry Smith } 2217f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2218f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2219f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2220f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2221f6d58c54SBarry Smith } else { 2222f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2223f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2224f6d58c54SBarry Smith colb --; 2225f6d58c54SBarry Smith #else 2226f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2227f6d58c54SBarry Smith #endif 2228f6d58c54SBarry Smith if (colb == -1) { 2229f6d58c54SBarry Smith m = 0; 2230f6d58c54SBarry Smith } else { 2231f6d58c54SBarry Smith colb = colb/bs; 2232f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2233f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2234f6d58c54SBarry Smith } 2235f6d58c54SBarry Smith } 2236f6d58c54SBarry Smith 2237f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2238f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2239f6d58c54SBarry Smith for (k=0; k<m; k++) { 2240f6d58c54SBarry Smith currentcol = *rows++; 2241f6d58c54SBarry Smith /* is it already in the list? */ 2242f6d58c54SBarry Smith do { 2243f6d58c54SBarry Smith mfm = fm; 2244f6d58c54SBarry Smith fm = rowhit[fm]; 2245f6d58c54SBarry Smith } while (fm < currentcol); 2246f6d58c54SBarry Smith /* not in list so add it */ 2247f6d58c54SBarry Smith if (fm != currentcol) { 2248f6d58c54SBarry Smith nrows++; 2249f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2250f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2251f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2252f6d58c54SBarry Smith rowhit[currentcol] = fm; 2253f6d58c54SBarry Smith fm = currentcol; 2254f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2255f6d58c54SBarry Smith } else { 2256e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2257f6d58c54SBarry Smith } 2258f6d58c54SBarry Smith } 2259f6d58c54SBarry Smith } 2260f6d58c54SBarry Smith c->nrows[i] = nrows; 2261f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2262f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2263f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2264f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2265f6d58c54SBarry Smith nrows = 0; 2266f6d58c54SBarry Smith fm = rowhit[M]; 2267f6d58c54SBarry Smith do { 2268f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2269f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2270f6d58c54SBarry Smith fm = rowhit[fm]; 2271f6d58c54SBarry Smith } while (fm < M); 2272f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2273f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2274f6d58c54SBarry Smith } 2275f6d58c54SBarry Smith 2276f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2277f6d58c54SBarry Smith /* 2278f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2279f6d58c54SBarry Smith */ 2280f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2281f6d58c54SBarry Smith PetscInt *garray; 2282f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2283f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2284f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2285f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2286f6d58c54SBarry Smith } 2287f6d58c54SBarry Smith } 2288f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2289f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2290f6d58c54SBarry Smith CHKMEMQ; 2291f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2292f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2293f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2294f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2295f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2296f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2297f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2298f6d58c54SBarry Smith colb = col - cstart; 2299f6d58c54SBarry Smith } else { 2300f6d58c54SBarry Smith /* column is in "off-processor" part */ 2301f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2302f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2303f6d58c54SBarry Smith colb --; 2304f6d58c54SBarry Smith #else 2305f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2306f6d58c54SBarry Smith #endif 2307f6d58c54SBarry Smith colb = colb/bs; 2308f6d58c54SBarry Smith colb += cend - cstart; 2309f6d58c54SBarry Smith } 2310f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2311f6d58c54SBarry Smith } 2312f6d58c54SBarry Smith } 2313f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2314f6d58c54SBarry Smith /* Get gtol mapping */ 2315f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2316f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2317f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2318f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2319f6d58c54SBarry Smith 2320f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2321f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2322f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2323f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2324f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2325f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2326f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2327f6d58c54SBarry Smith } 2328f6d58c54SBarry Smith } 2329f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2330f6d58c54SBarry Smith } 2331f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2332f6d58c54SBarry Smith 2333f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2334f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2335f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2336f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2337f6d58c54SBarry Smith CHKMEMQ; 2338f6d58c54SBarry Smith PetscFunctionReturn(0); 2339f6d58c54SBarry Smith } 2340f6d58c54SBarry Smith 2341f6d58c54SBarry Smith #undef __FUNCT__ 2342f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2343f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2344f6d58c54SBarry Smith { 2345f6d58c54SBarry Smith Mat B; 2346f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2347f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2348f6d58c54SBarry Smith Mat_SeqAIJ *b; 2349f6d58c54SBarry Smith PetscErrorCode ierr; 2350f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2351f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2352f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2353f6d58c54SBarry Smith 2354f6d58c54SBarry Smith PetscFunctionBegin; 2355f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2356f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2357f6d58c54SBarry Smith 2358f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2359f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2360f6d58c54SBarry Smith */ 2361f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2362f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2363f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2364f6d58c54SBarry Smith } 2365f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2366f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2367f6d58c54SBarry Smith displs = recvcounts + size; 2368f6d58c54SBarry Smith for (i=0; i<size; i++) { 2369f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2370f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2371f6d58c54SBarry Smith } 2372f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2373f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2374f6d58c54SBarry Smith #else 2375f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2376f6d58c54SBarry Smith #endif 2377f6d58c54SBarry Smith /* --------------------------------------------------------------- 2378f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2379f6d58c54SBarry Smith */ 2380f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2381f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2382f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2383f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2384f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2385f6d58c54SBarry Smith 2386f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2387f6d58c54SBarry Smith Copy my part of matrix column indices over 2388f6d58c54SBarry Smith */ 2389f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2390f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2391f6d58c54SBarry Smith a_jsendbuf = ad->j; 2392f6d58c54SBarry Smith b_jsendbuf = bd->j; 2393f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2394f6d58c54SBarry Smith cnt = 0; 2395f6d58c54SBarry Smith for (i=0; i<n; i++) { 2396f6d58c54SBarry Smith 2397f6d58c54SBarry Smith /* put in lower diagonal portion */ 2398f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2399f6d58c54SBarry Smith while (m > 0) { 2400f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2401f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2402f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2403f6d58c54SBarry Smith m--; 2404f6d58c54SBarry Smith } 2405f6d58c54SBarry Smith 2406f6d58c54SBarry Smith /* put in diagonal portion */ 2407f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2408f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2409f6d58c54SBarry Smith } 2410f6d58c54SBarry Smith 2411f6d58c54SBarry Smith /* put in upper diagonal portion */ 2412f6d58c54SBarry Smith while (m-- > 0) { 2413f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2414f6d58c54SBarry Smith } 2415f6d58c54SBarry Smith } 2416e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2417f6d58c54SBarry Smith 2418f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2419f6d58c54SBarry Smith Gather all column indices to all processors 2420f6d58c54SBarry Smith */ 2421f6d58c54SBarry Smith for (i=0; i<size; i++) { 2422f6d58c54SBarry Smith recvcounts[i] = 0; 2423f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2424f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2425f6d58c54SBarry Smith } 2426f6d58c54SBarry Smith } 2427f6d58c54SBarry Smith displs[0] = 0; 2428f6d58c54SBarry Smith for (i=1; i<size; i++) { 2429f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2430f6d58c54SBarry Smith } 2431f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2432f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2433f6d58c54SBarry Smith #else 2434f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2435f6d58c54SBarry Smith #endif 2436f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2437f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2438f6d58c54SBarry Smith */ 2439f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2440f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2441f6d58c54SBarry Smith /* set the b->i indices */ 2442f6d58c54SBarry Smith b->i[0] = 0; 2443f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2444f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2445f6d58c54SBarry Smith } 2446f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2447f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2448f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2449f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2450f6d58c54SBarry Smith 2451f6d58c54SBarry Smith if (A->symmetric){ 2452f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2453f6d58c54SBarry Smith } else if (A->hermitian) { 2454f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2455f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2456f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2457f6d58c54SBarry Smith } 2458f6d58c54SBarry Smith *newmat = B; 2459f6d58c54SBarry Smith PetscFunctionReturn(0); 2460f6d58c54SBarry Smith } 2461f6d58c54SBarry Smith 2462b1a666ecSBarry Smith #undef __FUNCT__ 2463b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2464b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2465b1a666ecSBarry Smith { 2466b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2467b1a666ecSBarry Smith PetscErrorCode ierr; 2468b1a666ecSBarry Smith Vec bb1 = 0; 2469b1a666ecSBarry Smith 2470b1a666ecSBarry Smith PetscFunctionBegin; 2471b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2472b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2473b1a666ecSBarry Smith } 2474b1a666ecSBarry Smith 2475b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2476b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2477b1a666ecSBarry Smith PetscFunctionReturn(0); 2478b1a666ecSBarry Smith } 2479b1a666ecSBarry Smith 2480b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2481b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2482b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2483b1a666ecSBarry Smith its--; 2484b1a666ecSBarry Smith } 2485b1a666ecSBarry Smith 2486b1a666ecSBarry Smith while (its--) { 2487b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2488b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2489b1a666ecSBarry Smith 2490b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2491b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2492b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2493b1a666ecSBarry Smith 2494b1a666ecSBarry Smith /* local sweep */ 2495b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2496b1a666ecSBarry Smith } 2497b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2498b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2499b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2500b1a666ecSBarry Smith its--; 2501b1a666ecSBarry Smith } 2502b1a666ecSBarry Smith while (its--) { 2503b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2504b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2505b1a666ecSBarry Smith 2506b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2507b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2508b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2509b1a666ecSBarry Smith 2510b1a666ecSBarry Smith /* local sweep */ 2511b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2512b1a666ecSBarry Smith } 2513b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2514b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2515b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2516b1a666ecSBarry Smith its--; 2517b1a666ecSBarry Smith } 2518b1a666ecSBarry Smith while (its--) { 2519b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2520b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2521b1a666ecSBarry Smith 2522b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2523b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2524b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2525b1a666ecSBarry Smith 2526b1a666ecSBarry Smith /* local sweep */ 2527b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2528b1a666ecSBarry Smith } 2529e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2530b1a666ecSBarry Smith 2531b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2532b1a666ecSBarry Smith PetscFunctionReturn(0); 2533b1a666ecSBarry Smith } 2534b1a666ecSBarry Smith 2535f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2536f6d58c54SBarry Smith 25378c7482ecSBarry Smith 253879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2539cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2540cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2541cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2542cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2543cc2dc46cSBarry Smith MatMult_MPIBAIJ, 254497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25457c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25467c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2547cc2dc46cSBarry Smith 0, 2548cc2dc46cSBarry Smith 0, 2549cc2dc46cSBarry Smith 0, 255097304618SKris Buschelman /*10*/ 0, 2551cc2dc46cSBarry Smith 0, 2552cc2dc46cSBarry Smith 0, 2553b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2554cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 255597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25567fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2557cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2558cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2559cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 256097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2561cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2562cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2563cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2564d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2565cc2dc46cSBarry Smith 0, 2566cc2dc46cSBarry Smith 0, 2567cc2dc46cSBarry Smith 0, 2568cc2dc46cSBarry Smith 0, 2569d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2570273d9f13SBarry Smith 0, 2571cc2dc46cSBarry Smith 0, 2572cc2dc46cSBarry Smith 0, 2573cc2dc46cSBarry Smith 0, 2574d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2575cc2dc46cSBarry Smith 0, 2576cc2dc46cSBarry Smith 0, 2577cc2dc46cSBarry Smith 0, 2578cc2dc46cSBarry Smith 0, 2579d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2580cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2581cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2582cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 25833c896bc6SHong Zhang MatCopy_MPIBAIJ, 2584d519adbfSMatthew Knepley /*44*/ 0, 2585cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2586cc2dc46cSBarry Smith 0, 2587cc2dc46cSBarry Smith 0, 2588cc2dc46cSBarry Smith 0, 258941c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2590cc2dc46cSBarry Smith 0, 2591cc2dc46cSBarry Smith 0, 2592cc2dc46cSBarry Smith 0, 2593cc2dc46cSBarry Smith 0, 2594f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2595cc2dc46cSBarry Smith 0, 2596cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 259782094794SBarry Smith MatPermute_MPIBAIJ, 2598cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2599d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2600f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2601f14a1c24SBarry Smith MatView_MPIBAIJ, 2602357abbc8SBarry Smith 0, 26037843d17aSBarry Smith 0, 2604d519adbfSMatthew Knepley /*64*/ 0, 26057843d17aSBarry Smith 0, 26067843d17aSBarry Smith 0, 26077843d17aSBarry Smith 0, 26087843d17aSBarry Smith 0, 2609d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26107843d17aSBarry Smith 0, 261197304618SKris Buschelman 0, 261297304618SKris Buschelman 0, 261397304618SKris Buschelman 0, 2614d519adbfSMatthew Knepley /*74*/ 0, 2615f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 261697304618SKris Buschelman 0, 261797304618SKris Buschelman 0, 261897304618SKris Buschelman 0, 2619d519adbfSMatthew Knepley /*79*/ 0, 262097304618SKris Buschelman 0, 262197304618SKris Buschelman 0, 262297304618SKris Buschelman 0, 2623865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2624d519adbfSMatthew Knepley /*84*/ 0, 2625865e5f61SKris Buschelman 0, 2626865e5f61SKris Buschelman 0, 2627865e5f61SKris Buschelman 0, 2628865e5f61SKris Buschelman 0, 2629d519adbfSMatthew Knepley /*89*/ 0, 2630865e5f61SKris Buschelman 0, 2631865e5f61SKris Buschelman 0, 2632865e5f61SKris Buschelman 0, 2633865e5f61SKris Buschelman 0, 2634d519adbfSMatthew Knepley /*94*/ 0, 2635865e5f61SKris Buschelman 0, 2636865e5f61SKris Buschelman 0, 263799cafbc1SBarry Smith 0, 263899cafbc1SBarry Smith 0, 2639d519adbfSMatthew Knepley /*99*/ 0, 264099cafbc1SBarry Smith 0, 264199cafbc1SBarry Smith 0, 264299cafbc1SBarry Smith 0, 264399cafbc1SBarry Smith 0, 2644d519adbfSMatthew Knepley /*104*/0, 264599cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26468c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26478c7482ecSBarry Smith 0, 26488c7482ecSBarry Smith 0, 2649d519adbfSMatthew Knepley /*109*/0, 26508c7482ecSBarry Smith 0, 26518c7482ecSBarry Smith 0, 26528c7482ecSBarry Smith 0, 26538c7482ecSBarry Smith 0, 2654f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26558c7482ecSBarry Smith 0, 26568c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 26578c7482ecSBarry Smith }; 265879bdfe76SSatish Balay 2659e18c124aSSatish Balay EXTERN_C_BEGIN 26604a2ae208SSatish Balay #undef __FUNCT__ 26614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2662be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26635ef9f2a5SBarry Smith { 26645ef9f2a5SBarry Smith PetscFunctionBegin; 26655ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26665ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26675ef9f2a5SBarry Smith PetscFunctionReturn(0); 26685ef9f2a5SBarry Smith } 2669e18c124aSSatish Balay EXTERN_C_END 267079bdfe76SSatish Balay 2671273d9f13SBarry Smith EXTERN_C_BEGIN 2672f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2673d94109b8SHong Zhang EXTERN_C_END 2674d94109b8SHong Zhang 2675b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2676aac34f13SBarry Smith #undef __FUNCT__ 2677aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2678cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2679aac34f13SBarry Smith { 2680b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2681b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2682b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2683b8d659d7SLisandro Dalcin PetscScalar *values=0; 2684aac34f13SBarry Smith PetscErrorCode ierr; 2685aac34f13SBarry Smith 2686aac34f13SBarry Smith PetscFunctionBegin; 2687b8d659d7SLisandro Dalcin 268865e19b50SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 268926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 269026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 269126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 269226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2693d0f46423SBarry Smith m = B->rmap->n/bs; 2694d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2695d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2696d0f46423SBarry Smith cend = B->cmap->rend/bs; 2697b8d659d7SLisandro Dalcin 2698e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2699fca92195SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 2700aac34f13SBarry Smith for (i=0; i<m; i++) { 2701cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2702e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2703b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2704cf12db73SBarry Smith JJ = jj + ii[i]; 2705b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2706aac34f13SBarry Smith if (*JJ >= cstart) break; 2707aac34f13SBarry Smith JJ++; 2708aac34f13SBarry Smith } 2709aac34f13SBarry Smith d = 0; 2710b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2711aac34f13SBarry Smith if (*JJ++ >= cend) break; 2712aac34f13SBarry Smith d++; 2713aac34f13SBarry Smith } 2714aac34f13SBarry Smith d_nnz[i] = d; 2715b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2716aac34f13SBarry Smith } 2717aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2718fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2719aac34f13SBarry Smith 2720b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2721b8d659d7SLisandro Dalcin if (!values) { 2722fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2723b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2724b8d659d7SLisandro Dalcin } 2725b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2726b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2727cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2728cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2729cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2730b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2731aac34f13SBarry Smith } 2732aac34f13SBarry Smith 2733b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2734aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2735aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2736aac34f13SBarry Smith 2737aac34f13SBarry Smith PetscFunctionReturn(0); 2738aac34f13SBarry Smith } 2739b8d659d7SLisandro Dalcin EXTERN_C_END 2740aac34f13SBarry Smith 2741aac34f13SBarry Smith #undef __FUNCT__ 2742aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2743aac34f13SBarry Smith /*@C 2744aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2745aac34f13SBarry Smith (the default parallel PETSc format). 2746aac34f13SBarry Smith 2747aac34f13SBarry Smith Collective on MPI_Comm 2748aac34f13SBarry Smith 2749aac34f13SBarry Smith Input Parameters: 2750aac34f13SBarry Smith + A - the matrix 2751aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2752aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2753aac34f13SBarry Smith - v - optional values in the matrix 2754aac34f13SBarry Smith 2755aac34f13SBarry Smith Level: developer 2756aac34f13SBarry Smith 2757aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2758aac34f13SBarry Smith 2759aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2760aac34f13SBarry Smith @*/ 2761be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2762aac34f13SBarry Smith { 2763aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2764aac34f13SBarry Smith 2765aac34f13SBarry Smith PetscFunctionBegin; 2766aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2767aac34f13SBarry Smith if (f) { 2768aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2769aac34f13SBarry Smith } 2770aac34f13SBarry Smith PetscFunctionReturn(0); 2771aac34f13SBarry Smith } 2772aac34f13SBarry Smith 2773d94109b8SHong Zhang EXTERN_C_BEGIN 27744a2ae208SSatish Balay #undef __FUNCT__ 2775a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2776be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2777a23d5eceSKris Buschelman { 2778a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2779dfbe8321SBarry Smith PetscErrorCode ierr; 2780db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2781a23d5eceSKris Buschelman 2782a23d5eceSKris Buschelman PetscFunctionBegin; 2783db4efbfdSBarry Smith if (bs < 0) { 27847adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2785db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 27868c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2787db4efbfdSBarry Smith bs = PetscAbs(bs); 2788db4efbfdSBarry Smith } 2789e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2790db4efbfdSBarry Smith bs = newbs; 2791db4efbfdSBarry Smith 2792a23d5eceSKris Buschelman 2793e7e72b3dSBarry Smith if (bs < 1) SETERRQ(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2794a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2795a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 2796e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 2797e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2798899cda47SBarry Smith 279926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 280026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 280126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 280226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2803899cda47SBarry Smith 2804a23d5eceSKris Buschelman if (d_nnz) { 2805d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2806e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2807a23d5eceSKris Buschelman } 2808a23d5eceSKris Buschelman } 2809a23d5eceSKris Buschelman if (o_nnz) { 2810d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2811e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2812a23d5eceSKris Buschelman } 2813a23d5eceSKris Buschelman } 2814a23d5eceSKris Buschelman 2815a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2816a23d5eceSKris Buschelman b->bs2 = bs*bs; 2817d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2818d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2819d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2820d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2821a23d5eceSKris Buschelman 2822a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2823d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2824a23d5eceSKris Buschelman } 2825d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2826d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2827d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2828d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2829a23d5eceSKris Buschelman 2830526dfc15SBarry Smith if (!B->preallocated) { 2831f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2832d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28339c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 283452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2835f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2836d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28379c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 283852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28397adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2840526dfc15SBarry Smith } 2841a23d5eceSKris Buschelman 2842526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2843526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2844526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2845a23d5eceSKris Buschelman PetscFunctionReturn(0); 2846a23d5eceSKris Buschelman } 2847a23d5eceSKris Buschelman EXTERN_C_END 2848a23d5eceSKris Buschelman 2849a23d5eceSKris Buschelman EXTERN_C_BEGIN 2850be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2851be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 285292b32695SKris Buschelman EXTERN_C_END 28535bf65638SKris Buschelman 285482094794SBarry Smith 285582094794SBarry Smith EXTERN_C_BEGIN 285682094794SBarry Smith #undef __FUNCT__ 285782094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 285882094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 285982094794SBarry Smith { 286082094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 286182094794SBarry Smith PetscErrorCode ierr; 286282094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 286382094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 286482094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 286582094794SBarry Smith 286682094794SBarry Smith PetscFunctionBegin; 286782094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 286882094794SBarry Smith ii[0] = 0; 286982094794SBarry Smith CHKMEMQ; 287082094794SBarry Smith for (i=0; i<M; i++) { 2871e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2872e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 287382094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 287482094794SBarry Smith /* remove one from count of matrix has diagonal */ 287582094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 287682094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 287782094794SBarry Smith } 287882094794SBarry Smith CHKMEMQ; 287982094794SBarry Smith } 288082094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 288182094794SBarry Smith cnt = 0; 288282094794SBarry Smith for (i=0; i<M; i++) { 288382094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 288482094794SBarry Smith if (garray[jo[j]] > rstart) break; 288582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 288682094794SBarry Smith CHKMEMQ; 288782094794SBarry Smith } 288882094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 288982094794SBarry Smith if (jd[k] != i) { 289082094794SBarry Smith jj[cnt++] = rstart + jd[k]; 289182094794SBarry Smith CHKMEMQ; 289282094794SBarry Smith } 289382094794SBarry Smith } 289482094794SBarry Smith for (;j<io[i+1]; j++) { 289582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 289682094794SBarry Smith CHKMEMQ; 289782094794SBarry Smith } 289882094794SBarry Smith } 289982094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 290082094794SBarry Smith PetscFunctionReturn(0); 290182094794SBarry Smith } 2902dbf0e21dSBarry Smith EXTERN_C_END 290382094794SBarry Smith 2904450b117fSShri Abhyankar EXTERN_C_BEGIN 2905450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 2906bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 2907450b117fSShri Abhyankar #endif 2908450b117fSShri Abhyankar EXTERN_C_END 2909450b117fSShri Abhyankar 29100bad9183SKris Buschelman /*MC 2911fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29120bad9183SKris Buschelman 29130bad9183SKris Buschelman Options Database Keys: 29148c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29158c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29168c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29170bad9183SKris Buschelman 29180bad9183SKris Buschelman Level: beginner 29190bad9183SKris Buschelman 29200bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29210bad9183SKris Buschelman M*/ 29220bad9183SKris Buschelman 292392b32695SKris Buschelman EXTERN_C_BEGIN 2924a23d5eceSKris Buschelman #undef __FUNCT__ 29254a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2926be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2927273d9f13SBarry Smith { 2928273d9f13SBarry Smith Mat_MPIBAIJ *b; 2929dfbe8321SBarry Smith PetscErrorCode ierr; 2930273d9f13SBarry Smith PetscTruth flg; 2931273d9f13SBarry Smith 2932273d9f13SBarry Smith PetscFunctionBegin; 293338f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 293482502324SSatish Balay B->data = (void*)b; 293582502324SSatish Balay 2936085a36d4SBarry Smith 2937273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2938273d9f13SBarry Smith B->mapping = 0; 2939273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2940273d9f13SBarry Smith 2941273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29427adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29437adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2944273d9f13SBarry Smith 2945273d9f13SBarry Smith /* build local table of row and column ownerships */ 2946899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2947273d9f13SBarry Smith 2948273d9f13SBarry Smith /* build cache for off array entries formed */ 29497adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2950273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2951273d9f13SBarry Smith b->colmap = PETSC_NULL; 2952273d9f13SBarry Smith b->garray = PETSC_NULL; 2953273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2954273d9f13SBarry Smith 2955273d9f13SBarry Smith /* stuff used in block assembly */ 2956273d9f13SBarry Smith b->barray = 0; 2957273d9f13SBarry Smith 2958273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2959273d9f13SBarry Smith b->lvec = 0; 2960273d9f13SBarry Smith b->Mvctx = 0; 2961273d9f13SBarry Smith 2962273d9f13SBarry Smith /* stuff for MatGetRow() */ 2963273d9f13SBarry Smith b->rowindices = 0; 2964273d9f13SBarry Smith b->rowvalues = 0; 2965273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2966273d9f13SBarry Smith 2967273d9f13SBarry Smith /* hash table stuff */ 2968273d9f13SBarry Smith b->ht = 0; 2969273d9f13SBarry Smith b->hd = 0; 2970273d9f13SBarry Smith b->ht_size = 0; 2971273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2972273d9f13SBarry Smith b->ht_fact = 0; 2973273d9f13SBarry Smith b->ht_total_ct = 0; 2974273d9f13SBarry Smith b->ht_insert_ct = 0; 2975273d9f13SBarry Smith 29767adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29778c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2978273d9f13SBarry Smith if (flg) { 2979f6275e2eSBarry Smith PetscReal fact = 1.39; 29804e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29818c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2982273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2983273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 29841e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2985273d9f13SBarry Smith } 29868c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 29878c07d4e3SBarry Smith 2988450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 2989bccb9932SShri Abhyankar ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr); 2990450b117fSShri Abhyankar #endif 299182094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 299282094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 299382094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2994273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2995273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2996273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2997273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2998273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2999273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3000273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3001273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3002273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3003a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3004a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3005a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3006aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 300744ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3008aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 300992b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 301092b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 301192b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30125bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30135bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30145bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 301517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3016273d9f13SBarry Smith PetscFunctionReturn(0); 3017273d9f13SBarry Smith } 3018273d9f13SBarry Smith EXTERN_C_END 3019273d9f13SBarry Smith 3020209238afSKris Buschelman /*MC 3021002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3022209238afSKris Buschelman 3023209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3024209238afSKris Buschelman and MATMPIBAIJ otherwise. 3025209238afSKris Buschelman 3026209238afSKris Buschelman Options Database Keys: 3027209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3028209238afSKris Buschelman 3029209238afSKris Buschelman Level: beginner 3030209238afSKris Buschelman 3031aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3032209238afSKris Buschelman M*/ 3033209238afSKris Buschelman 3034209238afSKris Buschelman EXTERN_C_BEGIN 3035209238afSKris Buschelman #undef __FUNCT__ 3036209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3037be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3038dfbe8321SBarry Smith { 30396849ba73SBarry Smith PetscErrorCode ierr; 3040b24ad042SBarry Smith PetscMPIInt size; 3041209238afSKris Buschelman 3042209238afSKris Buschelman PetscFunctionBegin; 30437adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3044209238afSKris Buschelman if (size == 1) { 3045209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3046209238afSKris Buschelman } else { 3047209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3048209238afSKris Buschelman } 3049209238afSKris Buschelman PetscFunctionReturn(0); 3050209238afSKris Buschelman } 3051209238afSKris Buschelman EXTERN_C_END 3052209238afSKris Buschelman 30534a2ae208SSatish Balay #undef __FUNCT__ 30544a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3055273d9f13SBarry Smith /*@C 3056aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3057273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3058273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3059273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3060273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3061273d9f13SBarry Smith 3062273d9f13SBarry Smith Collective on Mat 3063273d9f13SBarry Smith 3064273d9f13SBarry Smith Input Parameters: 3065273d9f13SBarry Smith + A - the matrix 3066273d9f13SBarry Smith . bs - size of blockk 3067273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3068273d9f13SBarry Smith submatrix (same for all local rows) 3069273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3070273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3071273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3072273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3073273d9f13SBarry Smith submatrix (same for all local rows). 3074273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3075273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3076273d9f13SBarry Smith each block row) or PETSC_NULL. 3077273d9f13SBarry Smith 307849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3079273d9f13SBarry Smith 3080273d9f13SBarry Smith Options Database Keys: 30818c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30828c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3083273d9f13SBarry Smith 3084273d9f13SBarry Smith Notes: 3085273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3086273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3087273d9f13SBarry Smith 3088273d9f13SBarry Smith Storage Information: 3089273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3090273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3091273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3092273d9f13SBarry Smith local matrix (a rectangular submatrix). 3093273d9f13SBarry Smith 3094273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3095273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3096273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3097273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3098273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3099273d9f13SBarry Smith 3100273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3101273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3102273d9f13SBarry Smith 3103273d9f13SBarry Smith .vb 3104273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3105273d9f13SBarry Smith ------------------- 3106273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3107273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3108273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3109273d9f13SBarry Smith ------------------- 3110273d9f13SBarry Smith .ve 3111273d9f13SBarry Smith 3112273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3113273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3114273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3115273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3116273d9f13SBarry Smith 3117273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3118273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3119273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3120273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3121273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3122273d9f13SBarry Smith matrices. 3123273d9f13SBarry Smith 3124aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3125aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3126aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3127aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3128aa95bbe8SBarry Smith 3129273d9f13SBarry Smith Level: intermediate 3130273d9f13SBarry Smith 3131273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3132273d9f13SBarry Smith 3133aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3134273d9f13SBarry Smith @*/ 3135be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3136273d9f13SBarry Smith { 3137b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3138273d9f13SBarry Smith 3139273d9f13SBarry Smith PetscFunctionBegin; 3140a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3141a23d5eceSKris Buschelman if (f) { 3142a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3143273d9f13SBarry Smith } 3144273d9f13SBarry Smith PetscFunctionReturn(0); 3145273d9f13SBarry Smith } 3146273d9f13SBarry Smith 31474a2ae208SSatish Balay #undef __FUNCT__ 31484a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 314979bdfe76SSatish Balay /*@C 315079bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 315179bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 315279bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 315379bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 315479bdfe76SSatish Balay performance can be increased by more than a factor of 50. 315579bdfe76SSatish Balay 3156db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3157db81eaa0SLois Curfman McInnes 315879bdfe76SSatish Balay Input Parameters: 3159db81eaa0SLois Curfman McInnes + comm - MPI communicator 316079bdfe76SSatish Balay . bs - size of blockk 316179bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 316292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 316392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 316492e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 316592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 316692e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3167be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3168be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 316947a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 317079bdfe76SSatish Balay submatrix (same for all local rows) 317147a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 317292e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3173db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 317447a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 317579bdfe76SSatish Balay submatrix (same for all local rows). 317647a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 317792e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 317892e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 317979bdfe76SSatish Balay 318079bdfe76SSatish Balay Output Parameter: 318179bdfe76SSatish Balay . A - the matrix 318279bdfe76SSatish Balay 3183db81eaa0SLois Curfman McInnes Options Database Keys: 31848c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31858c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31863ffaccefSLois Curfman McInnes 3187175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3188ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3189175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3190175b88e8SBarry Smith 3191b259b22eSLois Curfman McInnes Notes: 319249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 319349a6f317SBarry Smith 319447a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 319547a75d0bSBarry Smith 319679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 319779bdfe76SSatish Balay (possibly both). 319879bdfe76SSatish Balay 3199be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3200be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3201be79a94dSBarry Smith 320279bdfe76SSatish Balay Storage Information: 320379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 320479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 320579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 320679bdfe76SSatish Balay local matrix (a rectangular submatrix). 320779bdfe76SSatish Balay 320879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 320979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 321079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 321179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 321279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 321379bdfe76SSatish Balay 321479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 321579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 321679bdfe76SSatish Balay 3217db81eaa0SLois Curfman McInnes .vb 3218db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3219db81eaa0SLois Curfman McInnes ------------------- 3220db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3221db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3222db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3223db81eaa0SLois Curfman McInnes ------------------- 3224db81eaa0SLois Curfman McInnes .ve 322579bdfe76SSatish Balay 322679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 322779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 322879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 322957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 323079bdfe76SSatish Balay 3231d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3232d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 323379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 323492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 323592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32366da5968aSLois Curfman McInnes matrices. 323779bdfe76SSatish Balay 3238027ccd11SLois Curfman McInnes Level: intermediate 3239027ccd11SLois Curfman McInnes 324092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 324179bdfe76SSatish Balay 3242aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 324379bdfe76SSatish Balay @*/ 3244be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 324579bdfe76SSatish Balay { 32466849ba73SBarry Smith PetscErrorCode ierr; 3247b24ad042SBarry Smith PetscMPIInt size; 324879bdfe76SSatish Balay 3249d64ed03dSBarry Smith PetscFunctionBegin; 3250f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3251f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3252d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3253273d9f13SBarry Smith if (size > 1) { 3254273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3255273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3256273d9f13SBarry Smith } else { 3257273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3258273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32593914022bSBarry Smith } 32603a40ed3dSBarry Smith PetscFunctionReturn(0); 326179bdfe76SSatish Balay } 3262026e39d0SSatish Balay 32634a2ae208SSatish Balay #undef __FUNCT__ 32644a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32656849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32660ac07820SSatish Balay { 32670ac07820SSatish Balay Mat mat; 32680ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3269dfbe8321SBarry Smith PetscErrorCode ierr; 3270b24ad042SBarry Smith PetscInt len=0; 32710ac07820SSatish Balay 3272d64ed03dSBarry Smith PetscFunctionBegin; 32730ac07820SSatish Balay *newmat = 0; 32747adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3275d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32767adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32771d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32787fff6886SHong Zhang 3279d5f3da31SBarry Smith mat->factortype = matin->factortype; 3280273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32810ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32827fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32837fff6886SHong Zhang 3284273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3285d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32860ac07820SSatish Balay a->bs2 = oldmat->bs2; 32870ac07820SSatish Balay a->mbs = oldmat->mbs; 32880ac07820SSatish Balay a->nbs = oldmat->nbs; 32890ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32900ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32910ac07820SSatish Balay 329226283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 329326283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3294899cda47SBarry Smith 32950ac07820SSatish Balay a->size = oldmat->size; 32960ac07820SSatish Balay a->rank = oldmat->rank; 3297aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3298aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3299aef5e8e0SSatish Balay a->rowindices = 0; 33000ac07820SSatish Balay a->rowvalues = 0; 33010ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 330230793edcSSatish Balay a->barray = 0; 3303899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3304899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3305899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3306899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33070ac07820SSatish Balay 3308133cdb44SSatish Balay /* hash table stuff */ 3309133cdb44SSatish Balay a->ht = 0; 3310133cdb44SSatish Balay a->hd = 0; 3311133cdb44SSatish Balay a->ht_size = 0; 3312133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 331325fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3314133cdb44SSatish Balay a->ht_total_ct = 0; 3315133cdb44SSatish Balay a->ht_insert_ct = 0; 3316133cdb44SSatish Balay 3317899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33180ac07820SSatish Balay if (oldmat->colmap) { 3319aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33200f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 332148e59246SSatish Balay #else 3322b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 332352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3324b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 332548e59246SSatish Balay #endif 33260ac07820SSatish Balay } else a->colmap = 0; 33274beb1cfeSHong Zhang 33280ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3329b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 333052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3331b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33320ac07820SSatish Balay } else a->garray = 0; 33330ac07820SSatish Balay 3334533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33350ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 333652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33370ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 333852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33397fff6886SHong Zhang 33402e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 334152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33422e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 334352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33447adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33450ac07820SSatish Balay *newmat = mat; 33464beb1cfeSHong Zhang 33473a40ed3dSBarry Smith PetscFunctionReturn(0); 33480ac07820SSatish Balay } 334957b952d6SSatish Balay 33504a2ae208SSatish Balay #undef __FUNCT__ 33514a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3352a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 335357b952d6SSatish Balay { 335457b952d6SSatish Balay Mat A; 33556849ba73SBarry Smith PetscErrorCode ierr; 3356b24ad042SBarry Smith int fd; 3357b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 335887828ca2SBarry Smith PetscScalar *vals,*buf; 335957b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 336057b952d6SSatish Balay MPI_Status status; 3361b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3362b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3363910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3364167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3365dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3366910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3367dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 336857b952d6SSatish Balay 3369d64ed03dSBarry Smith PetscFunctionBegin; 337077925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33718c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33728c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 337357b952d6SSatish Balay 3374d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3375d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 337657b952d6SSatish Balay if (!rank) { 3377b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3378e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3379e32f2f54SBarry Smith if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33806c5fab8fSBarry Smith } 3381d64ed03dSBarry Smith 3382b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 338357b952d6SSatish Balay M = header[1]; N = header[2]; 338457b952d6SSatish Balay 3385e7e72b3dSBarry Smith if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices"); 338657b952d6SSatish Balay 338757b952d6SSatish Balay /* 338857b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 338957b952d6SSatish Balay divisible by the blocksize 339057b952d6SSatish Balay */ 339157b952d6SSatish Balay Mbs = M/bs; 3392dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 339357b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 339457b952d6SSatish Balay else Mbs++; 339557b952d6SSatish Balay if (extra_rows && !rank) { 33961e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 339757b952d6SSatish Balay } 3398537820f0SBarry Smith 339957b952d6SSatish Balay /* determine ownership of all rows */ 340057b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 340157b952d6SSatish Balay m = mbs*bs; 3402dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3403b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3404167e7480SBarry Smith 3405167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3406167e7480SBarry Smith if (!rank) { 3407167e7480SBarry Smith mmax = rowners[1]; 3408167e7480SBarry Smith for (i=2; i<size; i++) { 3409167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3410167e7480SBarry Smith } 3411ca02efcfSSatish Balay mmax*=bs; 3412167e7480SBarry Smith } else mmax = m; 3413167e7480SBarry Smith 341457b952d6SSatish Balay rowners[0] = 0; 3415cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3416cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 341757b952d6SSatish Balay rstart = rowners[rank]; 341857b952d6SSatish Balay rend = rowners[rank+1]; 341957b952d6SSatish Balay 342057b952d6SSatish Balay /* distribute row lengths to all processors */ 342119c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 342257b952d6SSatish Balay if (!rank) { 3423dc231df0SBarry Smith mend = m; 3424dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3425dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3426dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3427dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3428b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3429b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3430dc231df0SBarry Smith for (j=0; j<m; j++) { 3431dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3432dc231df0SBarry Smith } 3433dc231df0SBarry Smith for (i=1; i<size; i++) { 3434dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3435dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3436dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3437dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3438dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3439dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 344057b952d6SSatish Balay procsnz[i] += rowlengths[j]; 344157b952d6SSatish Balay } 3442dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 344357b952d6SSatish Balay } 3444606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3445dc231df0SBarry Smith } else { 3446dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3447dc231df0SBarry Smith } 344857b952d6SSatish Balay 3449dc231df0SBarry Smith if (!rank) { 345057b952d6SSatish Balay /* determine max buffer needed and allocate it */ 34518a8e0b3aSBarry Smith maxnz = procsnz[0]; 3452cdc0ba36SBarry Smith for (i=1; i<size; i++) { 345357b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 345457b952d6SSatish Balay } 3455b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 345657b952d6SSatish Balay 345757b952d6SSatish Balay /* read in my part of the matrix column indices */ 345857b952d6SSatish Balay nz = procsnz[0]; 345919c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 346057b952d6SSatish Balay mycols = ibuf; 3461cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3462e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3463cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3464cee3aa6bSSatish Balay 346557b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 346657b952d6SSatish Balay for (i=1; i<size-1; i++) { 346757b952d6SSatish Balay nz = procsnz[i]; 3468e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3469b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 347057b952d6SSatish Balay } 347157b952d6SSatish Balay /* read in the stuff for the last proc */ 347257b952d6SSatish Balay if (size != 1) { 347357b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3474e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 347557b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3476b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 347757b952d6SSatish Balay } 3478606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3479d64ed03dSBarry Smith } else { 348057b952d6SSatish Balay /* determine buffer space needed for message */ 348157b952d6SSatish Balay nz = 0; 348257b952d6SSatish Balay for (i=0; i<m; i++) { 348357b952d6SSatish Balay nz += locrowlens[i]; 348457b952d6SSatish Balay } 348519c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 348657b952d6SSatish Balay mycols = ibuf; 348757b952d6SSatish Balay /* receive message of column indices*/ 3488b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3489b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 3490e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 349157b952d6SSatish Balay } 349257b952d6SSatish Balay 349357b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3494dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3495dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3496dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3497dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3498dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 349957b952d6SSatish Balay rowcount = 0; nzcount = 0; 350057b952d6SSatish Balay for (i=0; i<mbs; i++) { 350157b952d6SSatish Balay dcount = 0; 350257b952d6SSatish Balay odcount = 0; 350357b952d6SSatish Balay for (j=0; j<bs; j++) { 350457b952d6SSatish Balay kmax = locrowlens[rowcount]; 350557b952d6SSatish Balay for (k=0; k<kmax; k++) { 350657b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 350757b952d6SSatish Balay if (!mask[tmp]) { 350857b952d6SSatish Balay mask[tmp] = 1; 350957b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 351057b952d6SSatish Balay else masked1[dcount++] = tmp; 351157b952d6SSatish Balay } 351257b952d6SSatish Balay } 351357b952d6SSatish Balay rowcount++; 351457b952d6SSatish Balay } 3515cee3aa6bSSatish Balay 351657b952d6SSatish Balay dlens[i] = dcount; 351757b952d6SSatish Balay odlens[i] = odcount; 3518cee3aa6bSSatish Balay 351957b952d6SSatish Balay /* zero out the mask elements we set */ 352057b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 352157b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 352257b952d6SSatish Balay } 3523cee3aa6bSSatish Balay 352457b952d6SSatish Balay /* create our matrix */ 3525f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3526f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 3527cb9801acSJed Brown ierr = MatSetType(A,type);CHKERRQ(ierr); 352878ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 352978ae41b4SKris Buschelman 353057b952d6SSatish Balay if (!rank) { 353119c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 353257b952d6SSatish Balay /* read in my part of the matrix numerical values */ 353357b952d6SSatish Balay nz = procsnz[0]; 353457b952d6SSatish Balay vals = buf; 3535cee3aa6bSSatish Balay mycols = ibuf; 3536cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3537e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3538cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3539537820f0SBarry Smith 354057b952d6SSatish Balay /* insert into matrix */ 354157b952d6SSatish Balay jj = rstart*bs; 354257b952d6SSatish Balay for (i=0; i<m; i++) { 3543dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 354457b952d6SSatish Balay mycols += locrowlens[i]; 354557b952d6SSatish Balay vals += locrowlens[i]; 354657b952d6SSatish Balay jj++; 354757b952d6SSatish Balay } 354857b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 354957b952d6SSatish Balay for (i=1; i<size-1; i++) { 355057b952d6SSatish Balay nz = procsnz[i]; 355157b952d6SSatish Balay vals = buf; 3552e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35537adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 355457b952d6SSatish Balay } 355557b952d6SSatish Balay /* the last proc */ 355657b952d6SSatish Balay if (size != 1){ 355757b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3558cee3aa6bSSatish Balay vals = buf; 3559e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 356057b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35617adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 356257b952d6SSatish Balay } 3563606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3564d64ed03dSBarry Smith } else { 356557b952d6SSatish Balay /* receive numeric values */ 356619c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 356757b952d6SSatish Balay 356857b952d6SSatish Balay /* receive message of values*/ 356957b952d6SSatish Balay vals = buf; 3570cee3aa6bSSatish Balay mycols = ibuf; 35717adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3572ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 3573e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 357457b952d6SSatish Balay 357557b952d6SSatish Balay /* insert into matrix */ 357657b952d6SSatish Balay jj = rstart*bs; 3577cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3578dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 357957b952d6SSatish Balay mycols += locrowlens[i]; 358057b952d6SSatish Balay vals += locrowlens[i]; 358157b952d6SSatish Balay jj++; 358257b952d6SSatish Balay } 358357b952d6SSatish Balay } 3584606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3585606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3586606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3587dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3588dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3589dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 35906d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 35916d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 359278ae41b4SKris Buschelman 359378ae41b4SKris Buschelman *newmat = A; 35943a40ed3dSBarry Smith PetscFunctionReturn(0); 359557b952d6SSatish Balay } 359657b952d6SSatish Balay 35974a2ae208SSatish Balay #undef __FUNCT__ 35984a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3599133cdb44SSatish Balay /*@ 3600133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3601133cdb44SSatish Balay 3602133cdb44SSatish Balay Input Parameters: 3603133cdb44SSatish Balay . mat - the matrix 3604133cdb44SSatish Balay . fact - factor 3605133cdb44SSatish Balay 3606fee21e36SBarry Smith Collective on Mat 3607fee21e36SBarry Smith 36088c890885SBarry Smith Level: advanced 36098c890885SBarry Smith 3610133cdb44SSatish Balay Notes: 36118c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3612133cdb44SSatish Balay 3613133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3614133cdb44SSatish Balay 3615133cdb44SSatish Balay .seealso: MatSetOption() 3616133cdb44SSatish Balay @*/ 3617be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3618133cdb44SSatish Balay { 3619dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36205bf65638SKris Buschelman 36215bf65638SKris Buschelman PetscFunctionBegin; 36225bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36235bf65638SKris Buschelman if (f) { 36245bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36255bf65638SKris Buschelman } 36265bf65638SKris Buschelman PetscFunctionReturn(0); 36275bf65638SKris Buschelman } 36285bf65638SKris Buschelman 3629be1d678aSKris Buschelman EXTERN_C_BEGIN 36305bf65638SKris Buschelman #undef __FUNCT__ 36315bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3632be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36335bf65638SKris Buschelman { 363425fdafccSSatish Balay Mat_MPIBAIJ *baij; 3635133cdb44SSatish Balay 3636133cdb44SSatish Balay PetscFunctionBegin; 3637133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3638133cdb44SSatish Balay baij->ht_fact = fact; 3639133cdb44SSatish Balay PetscFunctionReturn(0); 3640133cdb44SSatish Balay } 3641be1d678aSKris Buschelman EXTERN_C_END 3642f2a5309cSSatish Balay 36434a2ae208SSatish Balay #undef __FUNCT__ 36444a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3645be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3646f2a5309cSSatish Balay { 3647f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3648f2a5309cSSatish Balay PetscFunctionBegin; 3649f2a5309cSSatish Balay *Ad = a->A; 3650f2a5309cSSatish Balay *Ao = a->B; 3651195d93cdSBarry Smith *colmap = a->garray; 3652f2a5309cSSatish Balay PetscFunctionReturn(0); 3653f2a5309cSSatish Balay } 365485535b8eSBarry Smith 365585535b8eSBarry Smith /* 365685535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 365785535b8eSBarry Smith */ 365885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 365985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 366085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 366185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 366285535b8eSBarry Smith #endif 366385535b8eSBarry Smith 366485535b8eSBarry Smith #undef __FUNCT__ 366585535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 366685535b8eSBarry Smith /*@C 366785535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 366885535b8eSBarry Smith 366985535b8eSBarry Smith Collective on Mat 367085535b8eSBarry Smith 367185535b8eSBarry Smith Input Parameters: 367285535b8eSBarry Smith + mat - the matrix 367385535b8eSBarry Smith . min - number of input rows 367485535b8eSBarry Smith . im - input rows 367585535b8eSBarry Smith . nin - number of input columns 367685535b8eSBarry Smith . in - input columns 367785535b8eSBarry Smith . v - numerical values input 367885535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 367985535b8eSBarry Smith 368085535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 368185535b8eSBarry Smith 368285535b8eSBarry Smith Level: advanced 368385535b8eSBarry Smith 368485535b8eSBarry Smith .seealso: MatSetValuesBlocked() 368585535b8eSBarry Smith @*/ 368685535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 368785535b8eSBarry Smith { 368885535b8eSBarry Smith /* convert input arguments to C version */ 368985535b8eSBarry Smith Mat mat = *matin; 369085535b8eSBarry Smith PetscInt m = *min, n = *nin; 369185535b8eSBarry Smith InsertMode addv = *addvin; 369285535b8eSBarry Smith 369385535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 369485535b8eSBarry Smith const MatScalar *value; 369585535b8eSBarry Smith MatScalar *barray=baij->barray; 369685535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 369785535b8eSBarry Smith PetscErrorCode ierr; 369885535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 369985535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3700d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 370185535b8eSBarry Smith 370285535b8eSBarry Smith PetscFunctionBegin; 370385535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 370485535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 370585535b8eSBarry Smith mat->insertmode = addv; 370685535b8eSBarry Smith } 370785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3708e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3709e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 371085535b8eSBarry Smith #endif 371185535b8eSBarry Smith if (mat->assembled) { 371285535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 371385535b8eSBarry Smith mat->assembled = PETSC_FALSE; 371485535b8eSBarry Smith } 371585535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 371685535b8eSBarry Smith 371785535b8eSBarry Smith 371885535b8eSBarry Smith if(!barray) { 371985535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 372085535b8eSBarry Smith baij->barray = barray; 372185535b8eSBarry Smith } 372285535b8eSBarry Smith 372385535b8eSBarry Smith if (roworiented) { 372485535b8eSBarry Smith stepval = (n-1)*bs; 372585535b8eSBarry Smith } else { 372685535b8eSBarry Smith stepval = (m-1)*bs; 372785535b8eSBarry Smith } 372885535b8eSBarry Smith for (i=0; i<m; i++) { 372985535b8eSBarry Smith if (im[i] < 0) continue; 373085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3731e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 373285535b8eSBarry Smith #endif 373385535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 373485535b8eSBarry Smith row = im[i] - rstart; 373585535b8eSBarry Smith for (j=0; j<n; j++) { 373685535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 373785535b8eSBarry Smith if ((roworiented) && (n == 1)) { 373885535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 373985535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 374085535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 374185535b8eSBarry Smith } else { /* Here a copy is required */ 374285535b8eSBarry Smith if (roworiented) { 374385535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 374485535b8eSBarry Smith } else { 374585535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 374685535b8eSBarry Smith } 374785535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 374885535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 374985535b8eSBarry Smith *barray++ = *value++; 375085535b8eSBarry Smith } 375185535b8eSBarry Smith } 375285535b8eSBarry Smith barray -=bs2; 375385535b8eSBarry Smith } 375485535b8eSBarry Smith 375585535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 375685535b8eSBarry Smith col = in[j] - cstart; 375797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 375885535b8eSBarry Smith } 375985535b8eSBarry Smith else if (in[j] < 0) continue; 376085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3761cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 376285535b8eSBarry Smith #endif 376385535b8eSBarry Smith else { 376485535b8eSBarry Smith if (mat->was_assembled) { 376585535b8eSBarry Smith if (!baij->colmap) { 376685535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 376785535b8eSBarry Smith } 376885535b8eSBarry Smith 376985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 377085535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 377185535b8eSBarry Smith { PetscInt data; 377285535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3773e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 377485535b8eSBarry Smith } 377585535b8eSBarry Smith #else 3776e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 377785535b8eSBarry Smith #endif 377885535b8eSBarry Smith #endif 377985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 378085535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 378185535b8eSBarry Smith col = (col - 1)/bs; 378285535b8eSBarry Smith #else 378385535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 378485535b8eSBarry Smith #endif 378585535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 378685535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 378785535b8eSBarry Smith col = in[j]; 378885535b8eSBarry Smith } 378985535b8eSBarry Smith } 379085535b8eSBarry Smith else col = in[j]; 379197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 379285535b8eSBarry Smith } 379385535b8eSBarry Smith } 379485535b8eSBarry Smith } else { 379585535b8eSBarry Smith if (!baij->donotstash) { 379685535b8eSBarry Smith if (roworiented) { 379785535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 379885535b8eSBarry Smith } else { 379985535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 380085535b8eSBarry Smith } 380185535b8eSBarry Smith } 380285535b8eSBarry Smith } 380385535b8eSBarry Smith } 380485535b8eSBarry Smith 380585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 380685535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 380785535b8eSBarry Smith PetscFunctionReturn(0); 380885535b8eSBarry Smith } 3809