xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision ff6e566a996c82a904bedf986d3e394ee4233f41)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
1693fea6afSBarry Smith /*  UGLY, ugly, ugly
1787828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
1893fea6afSBarry Smith    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
1993fea6afSBarry Smith    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
2093fea6afSBarry Smith    converts the entries into single precision and then calls ..._MatScalar() to put them
2193fea6afSBarry Smith    into the single precision data structures.
2293fea6afSBarry Smith */
2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
2993fea6afSBarry Smith #else
306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar      MatSetValuesBlocked_SeqBAIJ
3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar             MatSetValues_MPIBAIJ
3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar      MatSetValuesBlocked_MPIBAIJ
336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar          MatSetValues_MPIBAIJ_HT
346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar   MatSetValuesBlocked_MPIBAIJ_HT
3593fea6afSBarry Smith #endif
363b2fbd54SBarry Smith 
374a2ae208SSatish Balay #undef __FUNCT__
38985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
39985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
407843d17aSBarry Smith {
417843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
42dfbe8321SBarry Smith   PetscErrorCode ierr;
43985db425SBarry Smith   PetscInt       i,*idxb = 0;
4487828ca2SBarry Smith   PetscScalar    *va,*vb;
457843d17aSBarry Smith   Vec            vtmp;
467843d17aSBarry Smith 
477843d17aSBarry Smith   PetscFunctionBegin;
487843d17aSBarry Smith 
49985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
501ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
51985db425SBarry Smith   if (idx) {
52*ff6e566aSBarry Smith     for (i=0; i<A->cmap.n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap.rstart;}
53985db425SBarry Smith   }
547843d17aSBarry Smith 
55899cda47SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr);
56985db425SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap.n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
57985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
581ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
597843d17aSBarry Smith 
60899cda47SBarry Smith   for (i=0; i<A->rmap.n; i++){
61985db425SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap.bs*a->garray[idxb[i]/A->cmap.bs] + (idxb[i] % A->cmap.bs);}
627843d17aSBarry Smith   }
637843d17aSBarry Smith 
641ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
651ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
66985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
67ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
687843d17aSBarry Smith   PetscFunctionReturn(0);
697843d17aSBarry Smith }
707843d17aSBarry Smith 
717fc3c18eSBarry Smith EXTERN_C_BEGIN
724a2ae208SSatish Balay #undef __FUNCT__
734a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
74be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
757fc3c18eSBarry Smith {
767fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
77dfbe8321SBarry Smith   PetscErrorCode ierr;
787fc3c18eSBarry Smith 
797fc3c18eSBarry Smith   PetscFunctionBegin;
807fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
817fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
827fc3c18eSBarry Smith   PetscFunctionReturn(0);
837fc3c18eSBarry Smith }
847fc3c18eSBarry Smith EXTERN_C_END
857fc3c18eSBarry Smith 
867fc3c18eSBarry Smith EXTERN_C_BEGIN
874a2ae208SSatish Balay #undef __FUNCT__
884a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
89be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
907fc3c18eSBarry Smith {
917fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
92dfbe8321SBarry Smith   PetscErrorCode ierr;
937fc3c18eSBarry Smith 
947fc3c18eSBarry Smith   PetscFunctionBegin;
957fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
967fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
977fc3c18eSBarry Smith   PetscFunctionReturn(0);
987fc3c18eSBarry Smith }
997fc3c18eSBarry Smith EXTERN_C_END
1007fc3c18eSBarry Smith 
101537820f0SBarry Smith /*
102537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
10357b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
10457b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
10557b952d6SSatish Balay    length of colmap equals the global matrix length.
10657b952d6SSatish Balay */
1074a2ae208SSatish Balay #undef __FUNCT__
1084a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
109dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
11057b952d6SSatish Balay {
11157b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
11257b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
1136849ba73SBarry Smith   PetscErrorCode ierr;
114899cda47SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap.bs;
11557b952d6SSatish Balay 
116d64ed03dSBarry Smith   PetscFunctionBegin;
117aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
118f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
11948e59246SSatish Balay   for (i=0; i<nbs; i++){
1200f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
12148e59246SSatish Balay   }
12248e59246SSatish Balay #else
123b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
12452e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
125b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
126928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
12748e59246SSatish Balay #endif
1283a40ed3dSBarry Smith   PetscFunctionReturn(0);
12957b952d6SSatish Balay }
13057b952d6SSatish Balay 
13180c1aa95SSatish Balay #define CHUNKSIZE  10
13280c1aa95SSatish Balay 
133f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
13480c1aa95SSatish Balay { \
13580c1aa95SSatish Balay  \
13680c1aa95SSatish Balay     brow = row/bs;  \
13780c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
138ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
13980c1aa95SSatish Balay       bcol = col/bs; \
14080c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
141ab26458aSBarry Smith       low = 0; high = nrow; \
142ab26458aSBarry Smith       while (high-low > 3) { \
143ab26458aSBarry Smith         t = (low+high)/2; \
144ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
145ab26458aSBarry Smith         else              low  = t; \
146ab26458aSBarry Smith       } \
147ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
14880c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
14980c1aa95SSatish Balay         if (rp[_i] == bcol) { \
15080c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
151eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
152eada6651SSatish Balay           else                    *bap  = value;  \
153ac7a638eSSatish Balay           goto a_noinsert; \
15480c1aa95SSatish Balay         } \
15580c1aa95SSatish Balay       } \
15689280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
157085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
158421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
15980c1aa95SSatish Balay       N = nrow++ - 1;  \
16080c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
16180c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
16280c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1633eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
16480c1aa95SSatish Balay       } \
1653eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
16680c1aa95SSatish Balay       rp[_i]                      = bcol;  \
16780c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
168ac7a638eSSatish Balay       a_noinsert:; \
16980c1aa95SSatish Balay     ailen[brow] = nrow; \
17080c1aa95SSatish Balay }
17157b952d6SSatish Balay 
172ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
173ac7a638eSSatish Balay { \
174ac7a638eSSatish Balay     brow = row/bs;  \
175ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
176ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
177ac7a638eSSatish Balay       bcol = col/bs; \
178ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
179ac7a638eSSatish Balay       low = 0; high = nrow; \
180ac7a638eSSatish Balay       while (high-low > 3) { \
181ac7a638eSSatish Balay         t = (low+high)/2; \
182ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
183ac7a638eSSatish Balay         else              low  = t; \
184ac7a638eSSatish Balay       } \
185ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
186ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
187ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
188ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
189ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
190ac7a638eSSatish Balay           else                    *bap  = value;  \
191ac7a638eSSatish Balay           goto b_noinsert; \
192ac7a638eSSatish Balay         } \
193ac7a638eSSatish Balay       } \
19489280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
195085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
196421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
197085a36d4SBarry Smith       CHKMEMQ;\
198ac7a638eSSatish Balay       N = nrow++ - 1;  \
199ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
200ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
201ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
2023eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
203ac7a638eSSatish Balay       } \
2043eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
205ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
206ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
207ac7a638eSSatish Balay       b_noinsert:; \
208ac7a638eSSatish Balay     bilen[brow] = nrow; \
209ac7a638eSSatish Balay }
210ac7a638eSSatish Balay 
21193fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
2124a2ae208SSatish Balay #undef __FUNCT__
2134a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
214b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
21557b952d6SSatish Balay {
2166fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
217dfbe8321SBarry Smith   PetscErrorCode ierr;
218b24ad042SBarry Smith   PetscInt       i,N = m*n;
2196fa18ffdSBarry Smith   MatScalar      *vsingle;
22093fea6afSBarry Smith 
22193fea6afSBarry Smith   PetscFunctionBegin;
2226fa18ffdSBarry Smith   if (N > b->setvalueslen) {
22305b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
22482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2256fa18ffdSBarry Smith     b->setvalueslen  = N;
2266fa18ffdSBarry Smith   }
2276fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2286fa18ffdSBarry Smith 
22993fea6afSBarry Smith   for (i=0; i<N; i++) {
23093fea6afSBarry Smith     vsingle[i] = v[i];
23193fea6afSBarry Smith   }
23293fea6afSBarry Smith   ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
23393fea6afSBarry Smith   PetscFunctionReturn(0);
23493fea6afSBarry Smith }
23593fea6afSBarry Smith 
2364a2ae208SSatish Balay #undef __FUNCT__
2374a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
238b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
23993fea6afSBarry Smith {
2406fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
241dfbe8321SBarry Smith   PetscErrorCode ierr;
242b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2436fa18ffdSBarry Smith   MatScalar      *vsingle;
24493fea6afSBarry Smith 
24593fea6afSBarry Smith   PetscFunctionBegin;
2466fa18ffdSBarry Smith   if (N > b->setvalueslen) {
24705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
24882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2496fa18ffdSBarry Smith     b->setvalueslen  = N;
2506fa18ffdSBarry Smith   }
2516fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
25293fea6afSBarry Smith   for (i=0; i<N; i++) {
25393fea6afSBarry Smith     vsingle[i] = v[i];
25493fea6afSBarry Smith   }
25593fea6afSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
25693fea6afSBarry Smith   PetscFunctionReturn(0);
25793fea6afSBarry Smith }
2586fa18ffdSBarry Smith 
2594a2ae208SSatish Balay #undef __FUNCT__
2604a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
261b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2626fa18ffdSBarry Smith {
2636fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
264dfbe8321SBarry Smith   PetscErrorCode ierr;
265b24ad042SBarry Smith   PetscInt       i,N = m*n;
2666fa18ffdSBarry Smith   MatScalar      *vsingle;
2676fa18ffdSBarry Smith 
2686fa18ffdSBarry Smith   PetscFunctionBegin;
2696fa18ffdSBarry Smith   if (N > b->setvalueslen) {
27005b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
27182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2726fa18ffdSBarry Smith     b->setvalueslen  = N;
2736fa18ffdSBarry Smith   }
2746fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2756fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2766fa18ffdSBarry Smith     vsingle[i] = v[i];
2776fa18ffdSBarry Smith   }
2786fa18ffdSBarry Smith   ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
2796fa18ffdSBarry Smith   PetscFunctionReturn(0);
2806fa18ffdSBarry Smith }
2816fa18ffdSBarry Smith 
2824a2ae208SSatish Balay #undef __FUNCT__
2834a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
284b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2856fa18ffdSBarry Smith {
2866fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
287dfbe8321SBarry Smith   PetscErrorCode ierr;
288b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2896fa18ffdSBarry Smith   MatScalar      *vsingle;
2906fa18ffdSBarry Smith 
2916fa18ffdSBarry Smith   PetscFunctionBegin;
2926fa18ffdSBarry Smith   if (N > b->setvalueslen) {
29305b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
29482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2956fa18ffdSBarry Smith     b->setvalueslen  = N;
2966fa18ffdSBarry Smith   }
2976fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2986fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2996fa18ffdSBarry Smith     vsingle[i] = v[i];
3006fa18ffdSBarry Smith   }
3016fa18ffdSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3026fa18ffdSBarry Smith   PetscFunctionReturn(0);
3036fa18ffdSBarry Smith }
30493fea6afSBarry Smith #endif
30593fea6afSBarry Smith 
3064a2ae208SSatish Balay #undef __FUNCT__
307e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
308b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
30993fea6afSBarry Smith {
31057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
31193fea6afSBarry Smith   MatScalar      value;
312273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
313dfbe8321SBarry Smith   PetscErrorCode ierr;
314b24ad042SBarry Smith   PetscInt       i,j,row,col;
315899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
316899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
317899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
31857b952d6SSatish Balay 
319eada6651SSatish Balay   /* Some Variables required in the macro */
32080c1aa95SSatish Balay   Mat            A = baij->A;
32180c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
322b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
3233eda8832SBarry Smith   MatScalar      *aa=a->a;
324ac7a638eSSatish Balay 
325ac7a638eSSatish Balay   Mat            B = baij->B;
326ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
327b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
3283eda8832SBarry Smith   MatScalar      *ba=b->a;
329ac7a638eSSatish Balay 
330b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
331b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
3323eda8832SBarry Smith   MatScalar      *ap,*bap;
33380c1aa95SSatish Balay 
334d64ed03dSBarry Smith   PetscFunctionBegin;
33557b952d6SSatish Balay   for (i=0; i<m; i++) {
3365ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3372515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
338899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
339639f9d9dSBarry Smith #endif
34057b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
34157b952d6SSatish Balay       row = im[i] - rstart_orig;
34257b952d6SSatish Balay       for (j=0; j<n; j++) {
34357b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
34457b952d6SSatish Balay           col = in[j] - cstart_orig;
34557b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
346f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
34780c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
34873959e64SBarry Smith         } else if (in[j] < 0) continue;
3492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
350899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);}
351639f9d9dSBarry Smith #endif
35257b952d6SSatish Balay         else {
35357b952d6SSatish Balay           if (mat->was_assembled) {
354905e6a2fSBarry Smith             if (!baij->colmap) {
355905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
356905e6a2fSBarry Smith             }
357aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3580f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
359bba1ac68SSatish Balay             col  = col - 1;
36048e59246SSatish Balay #else
361bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
36248e59246SSatish Balay #endif
36357b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
36457b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
3658295de27SSatish Balay               col =  in[j];
3669bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
3679bf004c3SSatish Balay               B = baij->B;
3689bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
3699bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
3709bf004c3SSatish Balay               ba=b->a;
371bba1ac68SSatish Balay             } else col += in[j]%bs;
3728295de27SSatish Balay           } else col = in[j];
37357b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
37490da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
37590da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
37657b952d6SSatish Balay         }
37757b952d6SSatish Balay       }
378d64ed03dSBarry Smith     } else {
37990f02eecSBarry Smith       if (!baij->donotstash) {
380ff2fd236SBarry Smith         if (roworiented) {
3816fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
382ff2fd236SBarry Smith         } else {
3836fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
38457b952d6SSatish Balay         }
38557b952d6SSatish Balay       }
38657b952d6SSatish Balay     }
38790f02eecSBarry Smith   }
3883a40ed3dSBarry Smith   PetscFunctionReturn(0);
38957b952d6SSatish Balay }
39057b952d6SSatish Balay 
3914a2ae208SSatish Balay #undef __FUNCT__
3924a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar"
393b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
394ab26458aSBarry Smith {
395ab26458aSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
396f15d580aSBarry Smith   const MatScalar *value;
397f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
398273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
399dfbe8321SBarry Smith   PetscErrorCode  ierr;
400899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
401899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
402899cda47SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
403ab26458aSBarry Smith 
404b16ae2b1SBarry Smith   PetscFunctionBegin;
40530793edcSSatish Balay   if(!barray) {
40682502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
40782502324SSatish Balay     baij->barray = barray;
40830793edcSSatish Balay   }
40930793edcSSatish Balay 
410ab26458aSBarry Smith   if (roworiented) {
411ab26458aSBarry Smith     stepval = (n-1)*bs;
412ab26458aSBarry Smith   } else {
413ab26458aSBarry Smith     stepval = (m-1)*bs;
414ab26458aSBarry Smith   }
415ab26458aSBarry Smith   for (i=0; i<m; i++) {
4165ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
41877431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
419ab26458aSBarry Smith #endif
420ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
421ab26458aSBarry Smith       row = im[i] - rstart;
422ab26458aSBarry Smith       for (j=0; j<n; j++) {
42315b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
42415b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
425f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
42615b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
427f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
42815b57d14SSatish Balay         } else { /* Here a copy is required */
429ab26458aSBarry Smith           if (roworiented) {
430ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
431ab26458aSBarry Smith           } else {
432ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
433abef11f7SSatish Balay           }
43447513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
43547513183SBarry Smith             for (jj=0; jj<bs; jj++) {
43630793edcSSatish Balay               *barray++  = *value++;
43747513183SBarry Smith             }
43847513183SBarry Smith           }
43930793edcSSatish Balay           barray -=bs2;
44015b57d14SSatish Balay         }
441abef11f7SSatish Balay 
442abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
443abef11f7SSatish Balay           col  = in[j] - cstart;
44493fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
445ab26458aSBarry Smith         }
4465ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
4472515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
44877431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
449ab26458aSBarry Smith #endif
450ab26458aSBarry Smith         else {
451ab26458aSBarry Smith           if (mat->was_assembled) {
452ab26458aSBarry Smith             if (!baij->colmap) {
453ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
454ab26458aSBarry Smith             }
455a5eb4965SSatish Balay 
4562515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
457aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
458b24ad042SBarry Smith             { PetscInt data;
4590f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
46029bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
461fa46199cSSatish Balay             }
46248e59246SSatish Balay #else
46329bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
464a5eb4965SSatish Balay #endif
46548e59246SSatish Balay #endif
466aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
4670f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
468fa46199cSSatish Balay             col  = (col - 1)/bs;
46948e59246SSatish Balay #else
470a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
47148e59246SSatish Balay #endif
472ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
473ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
474ab26458aSBarry Smith               col =  in[j];
475ab26458aSBarry Smith             }
476ab26458aSBarry Smith           }
477ab26458aSBarry Smith           else col = in[j];
47893fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
479ab26458aSBarry Smith         }
480ab26458aSBarry Smith       }
481d64ed03dSBarry Smith     } else {
482ab26458aSBarry Smith       if (!baij->donotstash) {
483ff2fd236SBarry Smith         if (roworiented) {
4846fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
485ff2fd236SBarry Smith         } else {
4866fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
487ff2fd236SBarry Smith         }
488abef11f7SSatish Balay       }
489ab26458aSBarry Smith     }
490ab26458aSBarry Smith   }
4913a40ed3dSBarry Smith   PetscFunctionReturn(0);
492ab26458aSBarry Smith }
4936fa18ffdSBarry Smith 
4940bdbc534SSatish Balay #define HASH_KEY 0.6180339887
495b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
496b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
497b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
4984a2ae208SSatish Balay #undef __FUNCT__
4994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar"
500b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
5010bdbc534SSatish Balay {
5020bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
503273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
504dfbe8321SBarry Smith   PetscErrorCode ierr;
505b24ad042SBarry Smith   PetscInt       i,j,row,col;
506899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
507899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,Nbs=baij->Nbs;
508899cda47SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx;
509329f5518SBarry Smith   PetscReal      tmp;
5103eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
5112515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
512b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5134a15367fSSatish Balay #endif
5140bdbc534SSatish Balay 
5150bdbc534SSatish Balay   PetscFunctionBegin;
5160bdbc534SSatish Balay 
5170bdbc534SSatish Balay   for (i=0; i<m; i++) {
5182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
51929bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
520899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
5210bdbc534SSatish Balay #endif
5220bdbc534SSatish Balay       row = im[i];
523c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5240bdbc534SSatish Balay       for (j=0; j<n; j++) {
5250bdbc534SSatish Balay         col = in[j];
5266fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
527b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
528c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
529c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5300bdbc534SSatish Balay 
531c2760754SSatish Balay 
532c2760754SSatish Balay         idx = h1;
5332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
534187ce0cbSSatish Balay         insert_ct++;
535187ce0cbSSatish Balay         total_ct++;
536187ce0cbSSatish Balay         if (HT[idx] != key) {
537187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
538187ce0cbSSatish Balay           if (idx == size) {
539187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
540187ce0cbSSatish Balay             if (idx == h1) {
54177431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
542187ce0cbSSatish Balay             }
543187ce0cbSSatish Balay           }
544187ce0cbSSatish Balay         }
545187ce0cbSSatish Balay #else
546c2760754SSatish Balay         if (HT[idx] != key) {
547c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
548c2760754SSatish Balay           if (idx == size) {
549c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
550c2760754SSatish Balay             if (idx == h1) {
55177431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
552c2760754SSatish Balay             }
553c2760754SSatish Balay           }
554c2760754SSatish Balay         }
555187ce0cbSSatish Balay #endif
556c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
557c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
558c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5590bdbc534SSatish Balay       }
5600bdbc534SSatish Balay     } else {
5610bdbc534SSatish Balay       if (!baij->donotstash) {
562ff2fd236SBarry Smith         if (roworiented) {
5638798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
564ff2fd236SBarry Smith         } else {
5658798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
5660bdbc534SSatish Balay         }
5670bdbc534SSatish Balay       }
5680bdbc534SSatish Balay     }
5690bdbc534SSatish Balay   }
5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
571187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
572187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
573187ce0cbSSatish Balay #endif
5740bdbc534SSatish Balay   PetscFunctionReturn(0);
5750bdbc534SSatish Balay }
5760bdbc534SSatish Balay 
5774a2ae208SSatish Balay #undef __FUNCT__
5784a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar"
579b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
5800bdbc534SSatish Balay {
5810bdbc534SSatish Balay   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
582273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
583dfbe8321SBarry Smith   PetscErrorCode  ierr;
584b24ad042SBarry Smith   PetscInt        i,j,ii,jj,row,col;
585899cda47SBarry Smith   PetscInt        rstart=baij->rstartbs;
586899cda47SBarry Smith   PetscInt        rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2;
587b24ad042SBarry Smith   PetscInt        h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
588329f5518SBarry Smith   PetscReal       tmp;
5893eda8832SBarry Smith   MatScalar       **HD = baij->hd,*baij_a;
590f15d580aSBarry Smith   const MatScalar *v_t,*value;
5912515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
592b24ad042SBarry Smith   PetscInt        total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5934a15367fSSatish Balay #endif
5940bdbc534SSatish Balay 
595d0a41580SSatish Balay   PetscFunctionBegin;
596d0a41580SSatish Balay 
5970bdbc534SSatish Balay   if (roworiented) {
5980bdbc534SSatish Balay     stepval = (n-1)*bs;
5990bdbc534SSatish Balay   } else {
6000bdbc534SSatish Balay     stepval = (m-1)*bs;
6010bdbc534SSatish Balay   }
6020bdbc534SSatish Balay   for (i=0; i<m; i++) {
6032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
60477431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
60577431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
6060bdbc534SSatish Balay #endif
6070bdbc534SSatish Balay     row   = im[i];
608187ce0cbSSatish Balay     v_t   = v + i*bs2;
609c2760754SSatish Balay     if (row >= rstart && row < rend) {
6100bdbc534SSatish Balay       for (j=0; j<n; j++) {
6110bdbc534SSatish Balay         col = in[j];
6120bdbc534SSatish Balay 
6130bdbc534SSatish Balay         /* Look up into the Hash Table */
614c2760754SSatish Balay         key = row*Nbs+col+1;
615c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6160bdbc534SSatish Balay 
617c2760754SSatish Balay         idx = h1;
6182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
619187ce0cbSSatish Balay         total_ct++;
620187ce0cbSSatish Balay         insert_ct++;
621187ce0cbSSatish Balay        if (HT[idx] != key) {
622187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
623187ce0cbSSatish Balay           if (idx == size) {
624187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
625187ce0cbSSatish Balay             if (idx == h1) {
62677431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
627187ce0cbSSatish Balay             }
628187ce0cbSSatish Balay           }
629187ce0cbSSatish Balay         }
630187ce0cbSSatish Balay #else
631c2760754SSatish Balay         if (HT[idx] != key) {
632c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
633c2760754SSatish Balay           if (idx == size) {
634c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
635c2760754SSatish Balay             if (idx == h1) {
63677431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
637c2760754SSatish Balay             }
638c2760754SSatish Balay           }
639c2760754SSatish Balay         }
640187ce0cbSSatish Balay #endif
641c2760754SSatish Balay         baij_a = HD[idx];
6420bdbc534SSatish Balay         if (roworiented) {
643c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
644187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
645187ce0cbSSatish Balay           value = v_t;
646187ce0cbSSatish Balay           v_t  += bs;
647fef45726SSatish Balay           if (addv == ADD_VALUES) {
648c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
649c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
650fef45726SSatish Balay                 baij_a[jj]  += *value++;
651b4cc0f5aSSatish Balay               }
652b4cc0f5aSSatish Balay             }
653fef45726SSatish Balay           } else {
654c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
655c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
656fef45726SSatish Balay                 baij_a[jj]  = *value++;
657fef45726SSatish Balay               }
658fef45726SSatish Balay             }
659fef45726SSatish Balay           }
6600bdbc534SSatish Balay         } else {
6610bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
662fef45726SSatish Balay           if (addv == ADD_VALUES) {
663b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
6640bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
665fef45726SSatish Balay                 baij_a[jj]  += *value++;
666fef45726SSatish Balay               }
667fef45726SSatish Balay             }
668fef45726SSatish Balay           } else {
669fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
670fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
671fef45726SSatish Balay                 baij_a[jj]  = *value++;
672fef45726SSatish Balay               }
673b4cc0f5aSSatish Balay             }
6740bdbc534SSatish Balay           }
6750bdbc534SSatish Balay         }
6760bdbc534SSatish Balay       }
6770bdbc534SSatish Balay     } else {
6780bdbc534SSatish Balay       if (!baij->donotstash) {
6790bdbc534SSatish Balay         if (roworiented) {
6808798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6810bdbc534SSatish Balay         } else {
6828798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6830bdbc534SSatish Balay         }
6840bdbc534SSatish Balay       }
6850bdbc534SSatish Balay     }
6860bdbc534SSatish Balay   }
6872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
688187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
689187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
690187ce0cbSSatish Balay #endif
6910bdbc534SSatish Balay   PetscFunctionReturn(0);
6920bdbc534SSatish Balay }
693133cdb44SSatish Balay 
6944a2ae208SSatish Balay #undef __FUNCT__
6954a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
696b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
697d6de1c52SSatish Balay {
698d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6996849ba73SBarry Smith   PetscErrorCode ierr;
700899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
701899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
702d6de1c52SSatish Balay 
703133cdb44SSatish Balay   PetscFunctionBegin;
704d6de1c52SSatish Balay   for (i=0; i<m; i++) {
70577431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
706899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
707d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
708d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
709d6de1c52SSatish Balay       for (j=0; j<n; j++) {
71077431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]);
711899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
712d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
713d6de1c52SSatish Balay           col = idxn[j] - bscstart;
71498dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
715d64ed03dSBarry Smith         } else {
716905e6a2fSBarry Smith           if (!baij->colmap) {
717905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
718905e6a2fSBarry Smith           }
719aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7200f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
721fa46199cSSatish Balay           data --;
72248e59246SSatish Balay #else
72348e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
72448e59246SSatish Balay #endif
72548e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
726d9d09a02SSatish Balay           else {
72748e59246SSatish Balay             col  = data + idxn[j]%bs;
72898dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
729d6de1c52SSatish Balay           }
730d6de1c52SSatish Balay         }
731d6de1c52SSatish Balay       }
732d64ed03dSBarry Smith     } else {
73329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
734d6de1c52SSatish Balay     }
735d6de1c52SSatish Balay   }
7363a40ed3dSBarry Smith  PetscFunctionReturn(0);
737d6de1c52SSatish Balay }
738d6de1c52SSatish Balay 
7394a2ae208SSatish Balay #undef __FUNCT__
7404a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
741dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
742d6de1c52SSatish Balay {
743d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
744d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746899cda47SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col;
747329f5518SBarry Smith   PetscReal      sum = 0.0;
7483eda8832SBarry Smith   MatScalar      *v;
749d6de1c52SSatish Balay 
750d64ed03dSBarry Smith   PetscFunctionBegin;
751d6de1c52SSatish Balay   if (baij->size == 1) {
752064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
753d6de1c52SSatish Balay   } else {
754d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
755d6de1c52SSatish Balay       v = amat->a;
7568a62d963SHong Zhang       nz = amat->nz*bs2;
7578a62d963SHong Zhang       for (i=0; i<nz; i++) {
758aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
759329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
760d6de1c52SSatish Balay #else
761d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
762d6de1c52SSatish Balay #endif
763d6de1c52SSatish Balay       }
764d6de1c52SSatish Balay       v = bmat->a;
7658a62d963SHong Zhang       nz = bmat->nz*bs2;
7668a62d963SHong Zhang       for (i=0; i<nz; i++) {
767aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
768329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
769d6de1c52SSatish Balay #else
770d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
771d6de1c52SSatish Balay #endif
772d6de1c52SSatish Balay       }
773064f8208SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
774064f8208SBarry Smith       *nrm = sqrt(*nrm);
7758a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7768a62d963SHong Zhang       PetscReal *tmp,*tmp2;
777899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
778899cda47SBarry Smith       ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
779899cda47SBarry Smith       tmp2 = tmp + mat->cmap.N;
780899cda47SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
7818a62d963SHong Zhang       v = amat->a; jj = amat->j;
7828a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7838a62d963SHong Zhang         for (j=0; j<bs; j++){
7848a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7858a62d963SHong Zhang           for (row=0; row<bs; row++){
7868a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7878a62d963SHong Zhang           }
7888a62d963SHong Zhang         }
7898a62d963SHong Zhang         jj++;
7908a62d963SHong Zhang       }
7918a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7928a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7938a62d963SHong Zhang         for (j=0; j<bs; j++){
7948a62d963SHong Zhang           col = bs*garray[*jj] + j;
7958a62d963SHong Zhang           for (row=0; row<bs; row++){
7968a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7978a62d963SHong Zhang           }
7988a62d963SHong Zhang         }
7998a62d963SHong Zhang         jj++;
8008a62d963SHong Zhang       }
801899cda47SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
8028a62d963SHong Zhang       *nrm = 0.0;
803899cda47SBarry Smith       for (j=0; j<mat->cmap.N; j++) {
8048a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8058a62d963SHong Zhang       }
8068a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
8078a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
808577dd1f9SKris Buschelman       PetscReal *sums;
809577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
8108a62d963SHong Zhang       sum = 0.0;
8118a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
8128a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
8138a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
8148a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
8158a62d963SHong Zhang         for (i=0; i<nz; i++) {
8168a62d963SHong Zhang           for (col=0; col<bs; col++){
8178a62d963SHong Zhang             for (row=0; row<bs; row++){
8188a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8198a62d963SHong Zhang             }
8208a62d963SHong Zhang           }
8218a62d963SHong Zhang         }
8228a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
8238a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
8248a62d963SHong Zhang         for (i=0; i<nz; i++) {
8258a62d963SHong Zhang           for (col=0; col<bs; col++){
8268a62d963SHong Zhang             for (row=0; row<bs; row++){
8278a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8288a62d963SHong Zhang             }
8298a62d963SHong Zhang           }
8308a62d963SHong Zhang         }
8318a62d963SHong Zhang         for (row=0; row<bs; row++){
8328a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
8338a62d963SHong Zhang         }
8348a62d963SHong Zhang       }
8358a62d963SHong Zhang       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
836577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
837d64ed03dSBarry Smith     } else {
83829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
839d6de1c52SSatish Balay     }
840d64ed03dSBarry Smith   }
8413a40ed3dSBarry Smith   PetscFunctionReturn(0);
842d6de1c52SSatish Balay }
84357b952d6SSatish Balay 
844fef45726SSatish Balay /*
845fef45726SSatish Balay   Creates the hash table, and sets the table
846fef45726SSatish Balay   This table is created only once.
847fef45726SSatish Balay   If new entried need to be added to the matrix
848fef45726SSatish Balay   then the hash table has to be destroyed and
849fef45726SSatish Balay   recreated.
850fef45726SSatish Balay */
8514a2ae208SSatish Balay #undef __FUNCT__
8524a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
853dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
854596b8d2eSBarry Smith {
855596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
856596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
857596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
858b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
8596849ba73SBarry Smith   PetscErrorCode ierr;
860899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
861899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
862b24ad042SBarry Smith   PetscInt       *HT,key;
8633eda8832SBarry Smith   MatScalar      **HD;
864329f5518SBarry Smith   PetscReal      tmp;
8656cf91177SBarry Smith #if defined(PETSC_USE_INFO)
866b24ad042SBarry Smith   PetscInt       ct=0,max=0;
8674a15367fSSatish Balay #endif
868fef45726SSatish Balay 
869d64ed03dSBarry Smith   PetscFunctionBegin;
870b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
8710bdbc534SSatish Balay   size = baij->ht_size;
872fef45726SSatish Balay 
8730bdbc534SSatish Balay   if (baij->ht) {
8740bdbc534SSatish Balay     PetscFunctionReturn(0);
875596b8d2eSBarry Smith   }
8760bdbc534SSatish Balay 
877fef45726SSatish Balay   /* Allocate Memory for Hash Table */
878b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
879b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
880b9e4cc15SSatish Balay   HD       = baij->hd;
881a07cd24cSSatish Balay   HT       = baij->ht;
882b9e4cc15SSatish Balay 
883b9e4cc15SSatish Balay 
884b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
8850bdbc534SSatish Balay 
886596b8d2eSBarry Smith 
887596b8d2eSBarry Smith   /* Loop Over A */
8880bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
889596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8900bdbc534SSatish Balay       row = i+rstart;
8910bdbc534SSatish Balay       col = aj[j]+cstart;
892596b8d2eSBarry Smith 
893187ce0cbSSatish Balay       key = row*Nbs + col + 1;
894c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8950bdbc534SSatish Balay       for (k=0; k<size; k++){
896958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8970bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8980bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
899596b8d2eSBarry Smith           break;
9006cf91177SBarry Smith #if defined(PETSC_USE_INFO)
901187ce0cbSSatish Balay         } else {
902187ce0cbSSatish Balay           ct++;
903187ce0cbSSatish Balay #endif
904596b8d2eSBarry Smith         }
905187ce0cbSSatish Balay       }
9066cf91177SBarry Smith #if defined(PETSC_USE_INFO)
907187ce0cbSSatish Balay       if (k> max) max = k;
908187ce0cbSSatish Balay #endif
909596b8d2eSBarry Smith     }
910596b8d2eSBarry Smith   }
911596b8d2eSBarry Smith   /* Loop Over B */
9120bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
913596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
9140bdbc534SSatish Balay       row = i+rstart;
9150bdbc534SSatish Balay       col = garray[bj[j]];
916187ce0cbSSatish Balay       key = row*Nbs + col + 1;
917c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9180bdbc534SSatish Balay       for (k=0; k<size; k++){
919958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
9200bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9210bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
922596b8d2eSBarry Smith           break;
9236cf91177SBarry Smith #if defined(PETSC_USE_INFO)
924187ce0cbSSatish Balay         } else {
925187ce0cbSSatish Balay           ct++;
926187ce0cbSSatish Balay #endif
927596b8d2eSBarry Smith         }
928187ce0cbSSatish Balay       }
9296cf91177SBarry Smith #if defined(PETSC_USE_INFO)
930187ce0cbSSatish Balay       if (k> max) max = k;
931187ce0cbSSatish Balay #endif
932596b8d2eSBarry Smith     }
933596b8d2eSBarry Smith   }
934596b8d2eSBarry Smith 
935596b8d2eSBarry Smith   /* Print Summary */
9366cf91177SBarry Smith #if defined(PETSC_USE_INFO)
937c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
938596b8d2eSBarry Smith     if (HT[i]) {j++;}
939c38d4ed2SBarry Smith   }
940ae15b995SBarry Smith   ierr = PetscInfo2(0,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
941187ce0cbSSatish Balay #endif
9423a40ed3dSBarry Smith   PetscFunctionReturn(0);
943596b8d2eSBarry Smith }
94457b952d6SSatish Balay 
9454a2ae208SSatish Balay #undef __FUNCT__
9464a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
947dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
948bbb85fb3SSatish Balay {
949bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
950dfbe8321SBarry Smith   PetscErrorCode ierr;
951b24ad042SBarry Smith   PetscInt       nstash,reallocs;
952bbb85fb3SSatish Balay   InsertMode     addv;
953bbb85fb3SSatish Balay 
954bbb85fb3SSatish Balay   PetscFunctionBegin;
955bbb85fb3SSatish Balay   if (baij->donotstash) {
956bbb85fb3SSatish Balay     PetscFunctionReturn(0);
957bbb85fb3SSatish Balay   }
958bbb85fb3SSatish Balay 
959bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
960bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
961bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
96229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
963bbb85fb3SSatish Balay   }
964bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
965bbb85fb3SSatish Balay 
966899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
967899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
9688798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
969ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
97046680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
971ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
972bbb85fb3SSatish Balay   PetscFunctionReturn(0);
973bbb85fb3SSatish Balay }
974bbb85fb3SSatish Balay 
9754a2ae208SSatish Balay #undef __FUNCT__
9764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
977dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
978bbb85fb3SSatish Balay {
979bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
98091c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
9816849ba73SBarry Smith   PetscErrorCode ierr;
982b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
983b24ad042SBarry Smith   PetscInt       *row,*col,other_disassembled;
9847c922b88SBarry Smith   PetscTruth     r1,r2,r3;
9853eda8832SBarry Smith   MatScalar      *val;
986bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
987b24ad042SBarry Smith   PetscMPIInt    n;
988bbb85fb3SSatish Balay 
98991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
990bbb85fb3SSatish Balay   PetscFunctionBegin;
991bbb85fb3SSatish Balay   if (!baij->donotstash) {
992a2d1c673SSatish Balay     while (1) {
9938798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
994a2d1c673SSatish Balay       if (!flg) break;
995a2d1c673SSatish Balay 
996bbb85fb3SSatish Balay       for (i=0; i<n;) {
997bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
998bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
999bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
1000bbb85fb3SSatish Balay         else       ncols = n-i;
1001bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
100293fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
1003bbb85fb3SSatish Balay         i = j;
1004bbb85fb3SSatish Balay       }
1005bbb85fb3SSatish Balay     }
10068798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
1007a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
1008a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
1009a2d1c673SSatish Balay        restore the original flags */
1010a2d1c673SSatish Balay     r1 = baij->roworiented;
1011a2d1c673SSatish Balay     r2 = a->roworiented;
101291c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
10137c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
10147c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
101591c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
1016a2d1c673SSatish Balay     while (1) {
10178798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1018a2d1c673SSatish Balay       if (!flg) break;
1019a2d1c673SSatish Balay 
1020a2d1c673SSatish Balay       for (i=0; i<n;) {
1021a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1022a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1023a2d1c673SSatish Balay         if (j < n) ncols = j-i;
1024a2d1c673SSatish Balay         else       ncols = n-i;
102593fea6afSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
1026a2d1c673SSatish Balay         i = j;
1027a2d1c673SSatish Balay       }
1028a2d1c673SSatish Balay     }
10298798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
1030a2d1c673SSatish Balay     baij->roworiented = r1;
1031a2d1c673SSatish Balay     a->roworiented    = r2;
103291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
1033bbb85fb3SSatish Balay   }
1034bbb85fb3SSatish Balay 
1035bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
1036bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
1037bbb85fb3SSatish Balay 
1038bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
1039bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
1040bbb85fb3SSatish Balay   /*
1041bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
1042bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
1043bbb85fb3SSatish Balay   */
1044bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
1045bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
1046bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
1047bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
1048bbb85fb3SSatish Balay     }
1049bbb85fb3SSatish Balay   }
1050bbb85fb3SSatish Balay 
1051bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
1052bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
1053bbb85fb3SSatish Balay   }
105491c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
1055bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
1056bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
1057bbb85fb3SSatish Balay 
10586cf91177SBarry Smith #if defined(PETSC_USE_INFO)
1059bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
1060ae15b995SBarry Smith     ierr = PetscInfo1(0,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
1061bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1062bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1063bbb85fb3SSatish Balay   }
1064bbb85fb3SSatish Balay #endif
1065bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1066bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
1067bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1068bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1069bbb85fb3SSatish Balay   }
1070bbb85fb3SSatish Balay 
1071606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
1072606d414cSSatish Balay   baij->rowvalues = 0;
1073bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1074bbb85fb3SSatish Balay }
107557b952d6SSatish Balay 
10764a2ae208SSatish Balay #undef __FUNCT__
10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
10786849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
107957b952d6SSatish Balay {
108057b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1081dfbe8321SBarry Smith   PetscErrorCode    ierr;
1082b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
1083899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
108432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
1085b0a32e0cSBarry Smith   PetscViewer       sviewer;
1086f3ef73ceSBarry Smith   PetscViewerFormat format;
108757b952d6SSatish Balay 
1088d64ed03dSBarry Smith   PetscFunctionBegin;
108932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1090fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
109132077d6dSBarry Smith   if (iascii) {
1092b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1093456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10944e220ebcSLois Curfman McInnes       MatInfo info;
1095d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
1096d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
109777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
1098899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
1099899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
1100d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
110177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1102d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
110377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1104b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
110557b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
11063a40ed3dSBarry Smith       PetscFunctionReturn(0);
1107fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
110877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
11093a40ed3dSBarry Smith       PetscFunctionReturn(0);
111004929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
111104929863SHong Zhang       PetscFunctionReturn(0);
111257b952d6SSatish Balay     }
111357b952d6SSatish Balay   }
111457b952d6SSatish Balay 
11150f5bd95cSBarry Smith   if (isdraw) {
1116b0a32e0cSBarry Smith     PetscDraw       draw;
111757b952d6SSatish Balay     PetscTruth isnull;
1118b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1119b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
112057b952d6SSatish Balay   }
112157b952d6SSatish Balay 
112257b952d6SSatish Balay   if (size == 1) {
1123873048abSBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
112457b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1125d64ed03dSBarry Smith   } else {
112657b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
112757b952d6SSatish Balay     Mat         A;
112857b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1129899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
11303eda8832SBarry Smith     MatScalar   *a;
113157b952d6SSatish Balay 
1132f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1133f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1134f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
113557b952d6SSatish Balay     if (!rank) {
1136f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1137d64ed03dSBarry Smith     } else {
1138f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
113957b952d6SSatish Balay     }
1140f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1141899cda47SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
114252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
114357b952d6SSatish Balay 
114457b952d6SSatish Balay     /* copy over the A part */
114557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
114657b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1147b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
114857b952d6SSatish Balay 
114957b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1150899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
115157b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
115257b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1153899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
115457b952d6SSatish Balay         for (k=0; k<bs; k++) {
115593fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1156cee3aa6bSSatish Balay           col++; a += bs;
115757b952d6SSatish Balay         }
115857b952d6SSatish Balay       }
115957b952d6SSatish Balay     }
116057b952d6SSatish Balay     /* copy over the B part */
116157b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
116257b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
116357b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1164899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
116557b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
116657b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
116757b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
116857b952d6SSatish Balay         for (k=0; k<bs; k++) {
116993fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1170cee3aa6bSSatish Balay           col++; a += bs;
117157b952d6SSatish Balay         }
117257b952d6SSatish Balay       }
117357b952d6SSatish Balay     }
1174606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
11756d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11766d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117755843e3eSBarry Smith     /*
117855843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1179b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
118055843e3eSBarry Smith     */
1181b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1182f14a1c24SBarry Smith     if (!rank) {
1183e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
11846831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
118557b952d6SSatish Balay     }
1186b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
118757b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
118857b952d6SSatish Balay   }
11893a40ed3dSBarry Smith   PetscFunctionReturn(0);
119057b952d6SSatish Balay }
119157b952d6SSatish Balay 
11924a2ae208SSatish Balay #undef __FUNCT__
11934a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1194dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
119557b952d6SSatish Balay {
1196dfbe8321SBarry Smith   PetscErrorCode ierr;
119732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
119857b952d6SSatish Balay 
1199d64ed03dSBarry Smith   PetscFunctionBegin;
120032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1201fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1202b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1203fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
120432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
12057b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
12065cd90555SBarry Smith   } else {
120779a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
120857b952d6SSatish Balay   }
12093a40ed3dSBarry Smith   PetscFunctionReturn(0);
121057b952d6SSatish Balay }
121157b952d6SSatish Balay 
12124a2ae208SSatish Balay #undef __FUNCT__
12134a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1214dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
121579bdfe76SSatish Balay {
121679bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1217dfbe8321SBarry Smith   PetscErrorCode ierr;
121879bdfe76SSatish Balay 
1219d64ed03dSBarry Smith   PetscFunctionBegin;
1220aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1221899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
122279bdfe76SSatish Balay #endif
12238798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12248798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
122579bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
122679bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1227aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12280f5bd95cSBarry Smith   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
122948e59246SSatish Balay #else
123005b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
123148e59246SSatish Balay #endif
123205b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1233606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1234606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
123505b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
123605b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
123705b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12386fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
123905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
12406fa18ffdSBarry Smith #endif
1241899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1242606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1243901853e0SKris Buschelman 
1244dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1245901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1246901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1247901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1248901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1249aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1250901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1251901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
12523a40ed3dSBarry Smith   PetscFunctionReturn(0);
125379bdfe76SSatish Balay }
125479bdfe76SSatish Balay 
12554a2ae208SSatish Balay #undef __FUNCT__
12564a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1257dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1258cee3aa6bSSatish Balay {
1259cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1260dfbe8321SBarry Smith   PetscErrorCode ierr;
1261b24ad042SBarry Smith   PetscInt       nt;
1262cee3aa6bSSatish Balay 
1263d64ed03dSBarry Smith   PetscFunctionBegin;
1264e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1265899cda47SBarry Smith   if (nt != A->cmap.n) {
126629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
126747b4a8eaSLois Curfman McInnes   }
1268e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1269899cda47SBarry Smith   if (nt != A->rmap.n) {
127029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
127147b4a8eaSLois Curfman McInnes   }
127243a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1273f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
127443a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1275f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
12763a40ed3dSBarry Smith   PetscFunctionReturn(0);
1277cee3aa6bSSatish Balay }
1278cee3aa6bSSatish Balay 
12794a2ae208SSatish Balay #undef __FUNCT__
12804a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1281dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1282cee3aa6bSSatish Balay {
1283cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1284dfbe8321SBarry Smith   PetscErrorCode ierr;
1285d64ed03dSBarry Smith 
1286d64ed03dSBarry Smith   PetscFunctionBegin;
128743a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1288f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
128943a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1290f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1292cee3aa6bSSatish Balay }
1293cee3aa6bSSatish Balay 
12944a2ae208SSatish Balay #undef __FUNCT__
12954a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1296dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1297cee3aa6bSSatish Balay {
1298cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1299dfbe8321SBarry Smith   PetscErrorCode ierr;
1300a5ff213dSBarry Smith   PetscTruth     merged;
1301cee3aa6bSSatish Balay 
1302d64ed03dSBarry Smith   PetscFunctionBegin;
1303a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1304cee3aa6bSSatish Balay   /* do nondiagonal part */
13057c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1306a5ff213dSBarry Smith   if (!merged) {
1307cee3aa6bSSatish Balay     /* send it on its way */
1308537820f0SBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1309cee3aa6bSSatish Balay     /* do local part */
13107c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1311cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1312a5ff213dSBarry Smith     /* inserted in yy until the next line */
1313639f9d9dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1314a5ff213dSBarry Smith   } else {
1315a5ff213dSBarry Smith     /* do local part */
1316a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1317a5ff213dSBarry Smith     /* send it on its way */
1318a5ff213dSBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1319a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1320a5ff213dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1321a5ff213dSBarry Smith   }
13223a40ed3dSBarry Smith   PetscFunctionReturn(0);
1323cee3aa6bSSatish Balay }
1324cee3aa6bSSatish Balay 
13254a2ae208SSatish Balay #undef __FUNCT__
13264a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1327dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1328cee3aa6bSSatish Balay {
1329cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1330dfbe8321SBarry Smith   PetscErrorCode ierr;
1331cee3aa6bSSatish Balay 
1332d64ed03dSBarry Smith   PetscFunctionBegin;
1333cee3aa6bSSatish Balay   /* do nondiagonal part */
13347c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1335cee3aa6bSSatish Balay   /* send it on its way */
1336537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1337cee3aa6bSSatish Balay   /* do local part */
13387c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1339cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1340cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1341cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1342537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
13433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1344cee3aa6bSSatish Balay }
1345cee3aa6bSSatish Balay 
1346cee3aa6bSSatish Balay /*
1347cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1348cee3aa6bSSatish Balay    diagonal block
1349cee3aa6bSSatish Balay */
13504a2ae208SSatish Balay #undef __FUNCT__
13514a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1352dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1353cee3aa6bSSatish Balay {
1354cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1355dfbe8321SBarry Smith   PetscErrorCode ierr;
1356d64ed03dSBarry Smith 
1357d64ed03dSBarry Smith   PetscFunctionBegin;
1358899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13593a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13603a40ed3dSBarry Smith   PetscFunctionReturn(0);
1361cee3aa6bSSatish Balay }
1362cee3aa6bSSatish Balay 
13634a2ae208SSatish Balay #undef __FUNCT__
13644a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1365f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1366cee3aa6bSSatish Balay {
1367cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1368dfbe8321SBarry Smith   PetscErrorCode ierr;
1369d64ed03dSBarry Smith 
1370d64ed03dSBarry Smith   PetscFunctionBegin;
1371f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1372f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
13733a40ed3dSBarry Smith   PetscFunctionReturn(0);
1374cee3aa6bSSatish Balay }
1375026e39d0SSatish Balay 
13764a2ae208SSatish Balay #undef __FUNCT__
13774a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1378b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1379acdf5bf4SSatish Balay {
1380acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
138187828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
13826849ba73SBarry Smith   PetscErrorCode ierr;
1383899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1384899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1385899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1386acdf5bf4SSatish Balay 
1387d64ed03dSBarry Smith   PetscFunctionBegin;
1388abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1389acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1390acdf5bf4SSatish Balay 
1391acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1392acdf5bf4SSatish Balay     /*
1393acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1394acdf5bf4SSatish Balay     */
1395acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1396b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1397bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1398acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1399acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1400acdf5bf4SSatish Balay     }
1401b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1402b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1403acdf5bf4SSatish Balay   }
1404acdf5bf4SSatish Balay 
140529bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1406d9d09a02SSatish Balay   lrow = row - brstart;
1407acdf5bf4SSatish Balay 
1408acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1409acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1410acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1411f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1412f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1413acdf5bf4SSatish Balay   nztot = nzA + nzB;
1414acdf5bf4SSatish Balay 
1415acdf5bf4SSatish Balay   cmap  = mat->garray;
1416acdf5bf4SSatish Balay   if (v  || idx) {
1417acdf5bf4SSatish Balay     if (nztot) {
1418acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1419b24ad042SBarry Smith       PetscInt imark = -1;
1420acdf5bf4SSatish Balay       if (v) {
1421acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1422acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1423d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1424acdf5bf4SSatish Balay           else break;
1425acdf5bf4SSatish Balay         }
1426acdf5bf4SSatish Balay         imark = i;
1427acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1428acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1429acdf5bf4SSatish Balay       }
1430acdf5bf4SSatish Balay       if (idx) {
1431acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1432acdf5bf4SSatish Balay         if (imark > -1) {
1433acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1434bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1435acdf5bf4SSatish Balay           }
1436acdf5bf4SSatish Balay         } else {
1437acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1438d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1439d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1440acdf5bf4SSatish Balay             else break;
1441acdf5bf4SSatish Balay           }
1442acdf5bf4SSatish Balay           imark = i;
1443acdf5bf4SSatish Balay         }
1444d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1445d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1446acdf5bf4SSatish Balay       }
1447d64ed03dSBarry Smith     } else {
1448d212a18eSSatish Balay       if (idx) *idx = 0;
1449d212a18eSSatish Balay       if (v)   *v   = 0;
1450d212a18eSSatish Balay     }
1451acdf5bf4SSatish Balay   }
1452acdf5bf4SSatish Balay   *nz = nztot;
1453f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1454f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1456acdf5bf4SSatish Balay }
1457acdf5bf4SSatish Balay 
14584a2ae208SSatish Balay #undef __FUNCT__
14594a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1460b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1461acdf5bf4SSatish Balay {
1462acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1463d64ed03dSBarry Smith 
1464d64ed03dSBarry Smith   PetscFunctionBegin;
1465abc0a331SBarry Smith   if (!baij->getrowactive) {
146629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1467acdf5bf4SSatish Balay   }
1468acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14693a40ed3dSBarry Smith   PetscFunctionReturn(0);
1470acdf5bf4SSatish Balay }
1471acdf5bf4SSatish Balay 
14724a2ae208SSatish Balay #undef __FUNCT__
14734a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1474dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
147558667388SSatish Balay {
147658667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1477dfbe8321SBarry Smith   PetscErrorCode ierr;
1478d64ed03dSBarry Smith 
1479d64ed03dSBarry Smith   PetscFunctionBegin;
148058667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
148158667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14823a40ed3dSBarry Smith   PetscFunctionReturn(0);
148358667388SSatish Balay }
14840ac07820SSatish Balay 
14854a2ae208SSatish Balay #undef __FUNCT__
14864a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1487dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14880ac07820SSatish Balay {
14894e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14904e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1491dfbe8321SBarry Smith   PetscErrorCode ierr;
1492329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
14930ac07820SSatish Balay 
1494d64ed03dSBarry Smith   PetscFunctionBegin;
1495899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
14964e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
14970e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1498de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
14994e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
15000e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1501de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
15020ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15034e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15044e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15054e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15064e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15074e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15080ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1509d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
15104e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15114e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15124e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15134e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15144e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15150ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1516d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
15174e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15184e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15194e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15204e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15214e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1522d41123aaSBarry Smith   } else {
152377431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15240ac07820SSatish Balay   }
1525899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1526899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1527899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1528899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
15294e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15304e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15314e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15323a40ed3dSBarry Smith   PetscFunctionReturn(0);
15330ac07820SSatish Balay }
15340ac07820SSatish Balay 
15354a2ae208SSatish Balay #undef __FUNCT__
15364a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1537dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op)
153858667388SSatish Balay {
153958667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1540dfbe8321SBarry Smith   PetscErrorCode ierr;
154158667388SSatish Balay 
1542d64ed03dSBarry Smith   PetscFunctionBegin;
154312c028f9SKris Buschelman   switch (op) {
154412c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
154512c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
154612c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
154712c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
154812c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
154912c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
155012c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
155198305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
155298305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
155312c028f9SKris Buschelman     break;
155412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15557c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
155698305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
155798305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
155812c028f9SKris Buschelman     break;
155912c028f9SKris Buschelman   case MAT_ROWS_SORTED:
156012c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
156112c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1562290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
156312c028f9SKris Buschelman     break;
156412c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
15657c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
156698305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
156798305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
156812c028f9SKris Buschelman     break;
156912c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15707c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
157112c028f9SKris Buschelman     break;
157212c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
157329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
157412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15757c922b88SBarry Smith     a->ht_flag = PETSC_TRUE;
157612c028f9SKris Buschelman     break;
157777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
157877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15792188ac68SBarry Smith   case MAT_HERMITIAN:
15802188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
15812188ac68SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
15822188ac68SBarry Smith     break;
15839a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
15849a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
15859a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
15869a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
1587290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
158877e54ba9SKris Buschelman     break;
158912c028f9SKris Buschelman   default:
1590ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1591d64ed03dSBarry Smith   }
15923a40ed3dSBarry Smith   PetscFunctionReturn(0);
159358667388SSatish Balay }
159458667388SSatish Balay 
15954a2ae208SSatish Balay #undef __FUNCT__
15964a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1597dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout)
15980ac07820SSatish Balay {
15990ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16000ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16010ac07820SSatish Balay   Mat            B;
1602dfbe8321SBarry Smith   PetscErrorCode ierr;
1603899cda47SBarry Smith   PetscInt       M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col;
1604899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,mbs=baij->mbs;
16053eda8832SBarry Smith   MatScalar      *a;
16060ac07820SSatish Balay 
1607d64ed03dSBarry Smith   PetscFunctionBegin;
160829bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1609f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&B);CHKERRQ(ierr);
1610899cda47SBarry Smith   ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr);
1611f204ca49SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
1612899cda47SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
16130ac07820SSatish Balay 
16140ac07820SSatish Balay   /* copy over the A part */
16150ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16160ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1617b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
16180ac07820SSatish Balay 
16190ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1620899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16210ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16220ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1623899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16240ac07820SSatish Balay       for (k=0; k<bs; k++) {
162593fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16260ac07820SSatish Balay         col++; a += bs;
16270ac07820SSatish Balay       }
16280ac07820SSatish Balay     }
16290ac07820SSatish Balay   }
16300ac07820SSatish Balay   /* copy over the B part */
16310ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16320ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
16330ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1634899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16350ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16360ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16370ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16380ac07820SSatish Balay       for (k=0; k<bs; k++) {
163993fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16400ac07820SSatish Balay         col++; a += bs;
16410ac07820SSatish Balay       }
16420ac07820SSatish Balay     }
16430ac07820SSatish Balay   }
1644606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16450ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16460ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16470ac07820SSatish Balay 
16487c922b88SBarry Smith   if (matout) {
16490ac07820SSatish Balay     *matout = B;
16500ac07820SSatish Balay   } else {
1651273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
16520ac07820SSatish Balay   }
16533a40ed3dSBarry Smith   PetscFunctionReturn(0);
16540ac07820SSatish Balay }
16550e95ebc0SSatish Balay 
16564a2ae208SSatish Balay #undef __FUNCT__
16574a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1658dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16590e95ebc0SSatish Balay {
166036c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
166136c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1662dfbe8321SBarry Smith   PetscErrorCode ierr;
1663b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16640e95ebc0SSatish Balay 
1665d64ed03dSBarry Smith   PetscFunctionBegin;
166636c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
166736c4a09eSSatish Balay   if (rr) {
166836c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
166929bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
167036c4a09eSSatish Balay     /* Overlap communication with computation. */
167136c4a09eSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
167236c4a09eSSatish Balay   }
16730e95ebc0SSatish Balay   if (ll) {
16740e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
167529bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1676a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
16770e95ebc0SSatish Balay   }
167836c4a09eSSatish Balay   /* scale  the diagonal block */
167936c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
168036c4a09eSSatish Balay 
168136c4a09eSSatish Balay   if (rr) {
168236c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
168336c4a09eSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1684a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
168536c4a09eSSatish Balay   }
168636c4a09eSSatish Balay 
16873a40ed3dSBarry Smith   PetscFunctionReturn(0);
16880e95ebc0SSatish Balay }
16890e95ebc0SSatish Balay 
16904a2ae208SSatish Balay #undef __FUNCT__
16914a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1692f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
16930ac07820SSatish Balay {
16940ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
16956849ba73SBarry Smith   PetscErrorCode ierr;
1696b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1697899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
1698b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1699b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
17006543fbbaSBarry Smith   PetscInt       *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1;
1701357c27ecSBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap.rstart;
17020ac07820SSatish Balay   MPI_Comm       comm = A->comm;
17030ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
17040ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
17056543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17066543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
17076543fbbaSBarry Smith #endif
17080ac07820SSatish Balay 
1709d64ed03dSBarry Smith   PetscFunctionBegin;
17100ac07820SSatish Balay   /*  first count number of contributors to each processor */
1711b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1712b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1713b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
17146543fbbaSBarry Smith   j = 0;
17150ac07820SSatish Balay   for (i=0; i<N; i++) {
17166543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
17176543fbbaSBarry Smith     lastidx = idx;
17186543fbbaSBarry Smith     for (; j<size; j++) {
1719357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
17206543fbbaSBarry Smith         nprocs[2*j]++;
17216543fbbaSBarry Smith         nprocs[2*j+1] = 1;
17226543fbbaSBarry Smith         owner[i] = j;
17236543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17246543fbbaSBarry Smith         found = PETSC_TRUE;
17256543fbbaSBarry Smith #endif
17266543fbbaSBarry Smith         break;
17270ac07820SSatish Balay       }
17280ac07820SSatish Balay     }
17296543fbbaSBarry Smith #if defined(PETSC_DEBUG)
173029bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
17316543fbbaSBarry Smith     found = PETSC_FALSE;
17326543fbbaSBarry Smith #endif
17330ac07820SSatish Balay   }
1734c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
17350ac07820SSatish Balay 
17360ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1737c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
17380ac07820SSatish Balay 
17390ac07820SSatish Balay   /* post receives:   */
1740b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1741b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
17420ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1743b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
17440ac07820SSatish Balay   }
17450ac07820SSatish Balay 
17460ac07820SSatish Balay   /* do sends:
17470ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
17480ac07820SSatish Balay      the ith processor
17490ac07820SSatish Balay   */
1750b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1751b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1752b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
17530ac07820SSatish Balay   starts[0]  = 0;
1754c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17550ac07820SSatish Balay   for (i=0; i<N; i++) {
17560ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
17570ac07820SSatish Balay   }
17580ac07820SSatish Balay 
17590ac07820SSatish Balay   starts[0] = 0;
1760c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17610ac07820SSatish Balay   count = 0;
17620ac07820SSatish Balay   for (i=0; i<size; i++) {
1763c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1764b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
17650ac07820SSatish Balay     }
17660ac07820SSatish Balay   }
1767606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
17680ac07820SSatish Balay 
1769357c27ecSBarry Smith   base = owners[rank];
17700ac07820SSatish Balay 
17710ac07820SSatish Balay   /*  wait on receives */
1772b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
17730ac07820SSatish Balay   source = lens + nrecvs;
17740ac07820SSatish Balay   count  = nrecvs; slen = 0;
17750ac07820SSatish Balay   while (count) {
1776ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
17770ac07820SSatish Balay     /* unpack receives into our local space */
1778b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
17790ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
17800ac07820SSatish Balay     lens[imdex]    = n;
17810ac07820SSatish Balay     slen          += n;
17820ac07820SSatish Balay     count--;
17830ac07820SSatish Balay   }
1784606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
17850ac07820SSatish Balay 
17860ac07820SSatish Balay   /* move the data into the send scatter */
1787b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
17880ac07820SSatish Balay   count = 0;
17890ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
17900ac07820SSatish Balay     values = rvalues + i*nmax;
17910ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
17920ac07820SSatish Balay       lrows[count++] = values[j] - base;
17930ac07820SSatish Balay     }
17940ac07820SSatish Balay   }
1795606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1796606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1797606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1798606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
17990ac07820SSatish Balay 
18000ac07820SSatish Balay   /* actually zap the local rows */
180172dacd9aSBarry Smith   /*
180272dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1803a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
180472dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
180572dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
180672dacd9aSBarry Smith 
1807f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
180872dacd9aSBarry Smith   */
18099c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1810f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1811899cda47SBarry Smith   if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) {
1812f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1813f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1814f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1815fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
181629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1817fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
18186525c446SSatish Balay     }
1819a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1820a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1821f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1822a07cd24cSSatish Balay     }
1823a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1824a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18259c957beeSSatish Balay   } else {
1826f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1827a07cd24cSSatish Balay   }
18289c957beeSSatish Balay 
1829606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1830a07cd24cSSatish Balay 
18310ac07820SSatish Balay   /* wait on sends */
18320ac07820SSatish Balay   if (nsends) {
183382502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1834ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1835606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
18360ac07820SSatish Balay   }
1837606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1838606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
18390ac07820SSatish Balay 
18403a40ed3dSBarry Smith   PetscFunctionReturn(0);
18410ac07820SSatish Balay }
184272dacd9aSBarry Smith 
18434a2ae208SSatish Balay #undef __FUNCT__
18444a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1845dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1846bb5a7306SBarry Smith {
1847bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1848dfbe8321SBarry Smith   PetscErrorCode ierr;
1849d64ed03dSBarry Smith 
1850d64ed03dSBarry Smith   PetscFunctionBegin;
1851bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18523a40ed3dSBarry Smith   PetscFunctionReturn(0);
1853bb5a7306SBarry Smith }
1854bb5a7306SBarry Smith 
18556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
18560ac07820SSatish Balay 
18574a2ae208SSatish Balay #undef __FUNCT__
18584a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1859dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
18607fc3c18eSBarry Smith {
18617fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18627fc3c18eSBarry Smith   Mat            a,b,c,d;
18637fc3c18eSBarry Smith   PetscTruth     flg;
1864dfbe8321SBarry Smith   PetscErrorCode ierr;
18657fc3c18eSBarry Smith 
18667fc3c18eSBarry Smith   PetscFunctionBegin;
18677fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18687fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18697fc3c18eSBarry Smith 
18707fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1871abc0a331SBarry Smith   if (flg) {
18727fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18737fc3c18eSBarry Smith   }
18747fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
18757fc3c18eSBarry Smith   PetscFunctionReturn(0);
18767fc3c18eSBarry Smith }
18777fc3c18eSBarry Smith 
18783c896bc6SHong Zhang #undef __FUNCT__
18793c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
18803c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18813c896bc6SHong Zhang {
18823c896bc6SHong Zhang   PetscErrorCode ierr;
18833c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
18843c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
18853c896bc6SHong Zhang 
18863c896bc6SHong Zhang   PetscFunctionBegin;
18873c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18883c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18893c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18903c896bc6SHong Zhang   } else {
18913c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18923c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18933c896bc6SHong Zhang   }
18943c896bc6SHong Zhang   PetscFunctionReturn(0);
18953c896bc6SHong Zhang }
1896273d9f13SBarry Smith 
18974a2ae208SSatish Balay #undef __FUNCT__
18984a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1899dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1900273d9f13SBarry Smith {
1901dfbe8321SBarry Smith   PetscErrorCode ierr;
1902273d9f13SBarry Smith 
1903273d9f13SBarry Smith   PetscFunctionBegin;
19047edd0491SSatish Balay   ierr =  MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1905273d9f13SBarry Smith   PetscFunctionReturn(0);
1906273d9f13SBarry Smith }
1907273d9f13SBarry Smith 
19084fe895cdSHong Zhang #include "petscblaslapack.h"
19094fe895cdSHong Zhang #undef __FUNCT__
19104fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
19114fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19124fe895cdSHong Zhang {
19134fe895cdSHong Zhang   PetscErrorCode ierr;
19144fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
19154fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19164fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19174fe895cdSHong Zhang 
19184fe895cdSHong Zhang   PetscFunctionBegin;
19194fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19204fe895cdSHong Zhang     PetscScalar alpha = a;
19214fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
19224fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
19234fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19244fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19254fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
19264fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
19274fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19284fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19294fe895cdSHong Zhang   } else {
19304fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
19314fe895cdSHong Zhang   }
19324fe895cdSHong Zhang   PetscFunctionReturn(0);
19334fe895cdSHong Zhang }
19344fe895cdSHong Zhang 
193599cafbc1SBarry Smith #undef __FUNCT__
193699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
193799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
193899cafbc1SBarry Smith {
193999cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
194099cafbc1SBarry Smith   PetscErrorCode ierr;
194199cafbc1SBarry Smith 
194299cafbc1SBarry Smith   PetscFunctionBegin;
194399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
194499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
194599cafbc1SBarry Smith   PetscFunctionReturn(0);
194699cafbc1SBarry Smith }
194799cafbc1SBarry Smith 
194899cafbc1SBarry Smith #undef __FUNCT__
194999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
195099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
195199cafbc1SBarry Smith {
195299cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
195399cafbc1SBarry Smith   PetscErrorCode ierr;
195499cafbc1SBarry Smith 
195599cafbc1SBarry Smith   PetscFunctionBegin;
195699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
195799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
195899cafbc1SBarry Smith   PetscFunctionReturn(0);
195999cafbc1SBarry Smith }
196099cafbc1SBarry Smith 
196179bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1962cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1963cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1964cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1965cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1966cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
196797304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
19687c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
19697c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1970cc2dc46cSBarry Smith        0,
1971cc2dc46cSBarry Smith        0,
1972cc2dc46cSBarry Smith        0,
197397304618SKris Buschelman /*10*/ 0,
1974cc2dc46cSBarry Smith        0,
1975cc2dc46cSBarry Smith        0,
1976cc2dc46cSBarry Smith        0,
1977cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
197897304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
19797fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
1980cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
1981cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
1982cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
198397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
1984cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
1985cc2dc46cSBarry Smith        0,
1986cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
1987cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
198897304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
1989cc2dc46cSBarry Smith        0,
1990cc2dc46cSBarry Smith        0,
1991cc2dc46cSBarry Smith        0,
1992cc2dc46cSBarry Smith        0,
199397304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
1994273d9f13SBarry Smith        0,
1995cc2dc46cSBarry Smith        0,
1996cc2dc46cSBarry Smith        0,
1997cc2dc46cSBarry Smith        0,
199897304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
1999cc2dc46cSBarry Smith        0,
2000cc2dc46cSBarry Smith        0,
2001cc2dc46cSBarry Smith        0,
2002cc2dc46cSBarry Smith        0,
20034fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ,
2004cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2005cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2006cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
20073c896bc6SHong Zhang        MatCopy_MPIBAIJ,
20088c07d4e3SBarry Smith /*45*/ 0,
2009cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2010cc2dc46cSBarry Smith        0,
2011cc2dc46cSBarry Smith        0,
2012cc2dc46cSBarry Smith        0,
2013521d7252SBarry Smith /*50*/ 0,
2014cc2dc46cSBarry Smith        0,
2015cc2dc46cSBarry Smith        0,
2016cc2dc46cSBarry Smith        0,
2017cc2dc46cSBarry Smith        0,
201897304618SKris Buschelman /*55*/ 0,
2019cc2dc46cSBarry Smith        0,
2020cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
2021cc2dc46cSBarry Smith        0,
2022cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
202397304618SKris Buschelman /*60*/ 0,
2024f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2025f14a1c24SBarry Smith        MatView_MPIBAIJ,
2026357abbc8SBarry Smith        0,
20277843d17aSBarry Smith        0,
202897304618SKris Buschelman /*65*/ 0,
20297843d17aSBarry Smith        0,
20307843d17aSBarry Smith        0,
20317843d17aSBarry Smith        0,
20327843d17aSBarry Smith        0,
2033985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPIBAIJ,
20347843d17aSBarry Smith        0,
203597304618SKris Buschelman        0,
203697304618SKris Buschelman        0,
203797304618SKris Buschelman        0,
203897304618SKris Buschelman /*75*/ 0,
203997304618SKris Buschelman        0,
204097304618SKris Buschelman        0,
204197304618SKris Buschelman        0,
204297304618SKris Buschelman        0,
204397304618SKris Buschelman /*80*/ 0,
204497304618SKris Buschelman        0,
204597304618SKris Buschelman        0,
204697304618SKris Buschelman        0,
2047865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2048865e5f61SKris Buschelman /*85*/ 0,
2049865e5f61SKris Buschelman        0,
2050865e5f61SKris Buschelman        0,
2051865e5f61SKris Buschelman        0,
2052865e5f61SKris Buschelman        0,
2053865e5f61SKris Buschelman /*90*/ 0,
2054865e5f61SKris Buschelman        0,
2055865e5f61SKris Buschelman        0,
2056865e5f61SKris Buschelman        0,
2057865e5f61SKris Buschelman        0,
2058865e5f61SKris Buschelman /*95*/ 0,
2059865e5f61SKris Buschelman        0,
2060865e5f61SKris Buschelman        0,
206199cafbc1SBarry Smith        0,
206299cafbc1SBarry Smith        0,
206399cafbc1SBarry Smith /*100*/0,
206499cafbc1SBarry Smith        0,
206599cafbc1SBarry Smith        0,
206699cafbc1SBarry Smith        0,
206799cafbc1SBarry Smith        0,
206899cafbc1SBarry Smith /*105*/0,
206999cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
207099cafbc1SBarry Smith        MatImaginaryPart_MPIBAIJ};
207179bdfe76SSatish Balay 
20725ef9f2a5SBarry Smith 
2073e18c124aSSatish Balay EXTERN_C_BEGIN
20744a2ae208SSatish Balay #undef __FUNCT__
20754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2076be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
20775ef9f2a5SBarry Smith {
20785ef9f2a5SBarry Smith   PetscFunctionBegin;
20795ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
20805ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
20815ef9f2a5SBarry Smith   PetscFunctionReturn(0);
20825ef9f2a5SBarry Smith }
2083e18c124aSSatish Balay EXTERN_C_END
208479bdfe76SSatish Balay 
2085273d9f13SBarry Smith EXTERN_C_BEGIN
2086f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2087d94109b8SHong Zhang EXTERN_C_END
2088d94109b8SHong Zhang 
2089aac34f13SBarry Smith #undef __FUNCT__
2090aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2091b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[])
2092aac34f13SBarry Smith {
2093899cda47SBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)B->data;
2094899cda47SBarry Smith   PetscInt       m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d;
2095899cda47SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii;
2096aac34f13SBarry Smith   const PetscInt *JJ;
2097aac34f13SBarry Smith   PetscScalar    *values;
2098aac34f13SBarry Smith   PetscErrorCode ierr;
2099aac34f13SBarry Smith 
2100aac34f13SBarry Smith   PetscFunctionBegin;
2101aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2102b7940d39SSatish Balay   if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]);
2103aac34f13SBarry Smith #endif
2104aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2105aac34f13SBarry Smith   o_nnz = d_nnz + m;
2106aac34f13SBarry Smith 
2107aac34f13SBarry Smith   for (i=0; i<m; i++) {
2108b7940d39SSatish Balay     nnz     = Ii[i+1]- Ii[i];
2109b7940d39SSatish Balay     JJ      = J + Ii[i];
2110aac34f13SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
2111aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2112aac34f13SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
2113aac34f13SBarry Smith #endif
2114aac34f13SBarry Smith     for (j=0; j<nnz; j++) {
2115aac34f13SBarry Smith       if (*JJ >= cstart) break;
2116aac34f13SBarry Smith       JJ++;
2117aac34f13SBarry Smith     }
2118aac34f13SBarry Smith     d = 0;
2119aac34f13SBarry Smith     for (; j<nnz; j++) {
2120aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2121aac34f13SBarry Smith       d++;
2122aac34f13SBarry Smith     }
2123aac34f13SBarry Smith     d_nnz[i] = d;
2124aac34f13SBarry Smith     o_nnz[i] = nnz - d;
2125aac34f13SBarry Smith   }
2126aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2127aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2128aac34f13SBarry Smith 
2129aac34f13SBarry Smith   if (v) values = (PetscScalar*)v;
2130aac34f13SBarry Smith   else {
2131aac34f13SBarry Smith     ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2132aac34f13SBarry Smith     ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2133aac34f13SBarry Smith   }
2134aac34f13SBarry Smith 
2135aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2136aac34f13SBarry Smith   for (i=0; i<m; i++) {
2137aac34f13SBarry Smith     ii   = i + rstart;
2138b7940d39SSatish Balay     nnz  = Ii[i+1]- Ii[i];
2139b7940d39SSatish Balay     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr);
2140aac34f13SBarry Smith   }
2141aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2142aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2143aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr);
2144aac34f13SBarry Smith 
2145aac34f13SBarry Smith   if (!v) {
2146aac34f13SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2147aac34f13SBarry Smith   }
2148aac34f13SBarry Smith   PetscFunctionReturn(0);
2149aac34f13SBarry Smith }
2150aac34f13SBarry Smith 
2151aac34f13SBarry Smith #undef __FUNCT__
2152aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2153aac34f13SBarry Smith /*@C
2154aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2155aac34f13SBarry Smith    (the default parallel PETSc format).
2156aac34f13SBarry Smith 
2157aac34f13SBarry Smith    Collective on MPI_Comm
2158aac34f13SBarry Smith 
2159aac34f13SBarry Smith    Input Parameters:
2160aac34f13SBarry Smith +  A - the matrix
2161aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2162aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2163aac34f13SBarry Smith -  v - optional values in the matrix
2164aac34f13SBarry Smith 
2165aac34f13SBarry Smith    Level: developer
2166aac34f13SBarry Smith 
2167aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2168aac34f13SBarry Smith 
2169aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2170aac34f13SBarry Smith @*/
2171be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2172aac34f13SBarry Smith {
2173aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2174aac34f13SBarry Smith 
2175aac34f13SBarry Smith   PetscFunctionBegin;
2176aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2177aac34f13SBarry Smith   if (f) {
2178aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2179aac34f13SBarry Smith   }
2180aac34f13SBarry Smith   PetscFunctionReturn(0);
2181aac34f13SBarry Smith }
2182aac34f13SBarry Smith 
2183d94109b8SHong Zhang EXTERN_C_BEGIN
21844a2ae208SSatish Balay #undef __FUNCT__
2185a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2186be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2187a23d5eceSKris Buschelman {
2188a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2189dfbe8321SBarry Smith   PetscErrorCode ierr;
2190b24ad042SBarry Smith   PetscInt       i;
2191a23d5eceSKris Buschelman 
2192a23d5eceSKris Buschelman   PetscFunctionBegin;
2193a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
21948c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
21958c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21968c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2197a23d5eceSKris Buschelman 
2198a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2199a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2200a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
220177431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
220277431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2203899cda47SBarry Smith 
2204899cda47SBarry Smith   B->rmap.bs  = bs;
2205899cda47SBarry Smith   B->cmap.bs  = bs;
2206899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
2207899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
2208899cda47SBarry Smith 
2209a23d5eceSKris Buschelman   if (d_nnz) {
2210899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
221177431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2212a23d5eceSKris Buschelman     }
2213a23d5eceSKris Buschelman   }
2214a23d5eceSKris Buschelman   if (o_nnz) {
2215899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
221677431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2217a23d5eceSKris Buschelman     }
2218a23d5eceSKris Buschelman   }
2219a23d5eceSKris Buschelman 
2220a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2221a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2222899cda47SBarry Smith   b->mbs = B->rmap.n/bs;
2223899cda47SBarry Smith   b->nbs = B->cmap.n/bs;
2224899cda47SBarry Smith   b->Mbs = B->rmap.N/bs;
2225899cda47SBarry Smith   b->Nbs = B->cmap.N/bs;
2226a23d5eceSKris Buschelman 
2227a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2228899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
2229a23d5eceSKris Buschelman   }
2230899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
2231899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
2232899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
2233899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
2234a23d5eceSKris Buschelman 
2235f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2236899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
22379c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2238c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
223952e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2240f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2241899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
22429c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2243c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
224452e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2245c60e587dSKris Buschelman 
2246a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
2247a23d5eceSKris Buschelman 
2248a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2249a23d5eceSKris Buschelman }
2250a23d5eceSKris Buschelman EXTERN_C_END
2251a23d5eceSKris Buschelman 
2252a23d5eceSKris Buschelman EXTERN_C_BEGIN
2253be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2254be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
225592b32695SKris Buschelman EXTERN_C_END
22565bf65638SKris Buschelman 
22570bad9183SKris Buschelman /*MC
2258fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
22590bad9183SKris Buschelman 
22600bad9183SKris Buschelman    Options Database Keys:
22618c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
22628c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
22638c07d4e3SBarry Smith - -mat_use_hash_table <fact>
22640bad9183SKris Buschelman 
22650bad9183SKris Buschelman   Level: beginner
22660bad9183SKris Buschelman 
22670bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
22680bad9183SKris Buschelman M*/
22690bad9183SKris Buschelman 
227092b32695SKris Buschelman EXTERN_C_BEGIN
2271a23d5eceSKris Buschelman #undef __FUNCT__
22724a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2273be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2274273d9f13SBarry Smith {
2275273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2276dfbe8321SBarry Smith   PetscErrorCode ierr;
2277273d9f13SBarry Smith   PetscTruth     flg;
2278273d9f13SBarry Smith 
2279273d9f13SBarry Smith   PetscFunctionBegin;
228082502324SSatish Balay   ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr);
228182502324SSatish Balay   B->data = (void*)b;
228282502324SSatish Balay 
2283085a36d4SBarry Smith 
2284273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2285273d9f13SBarry Smith   B->mapping    = 0;
2286273d9f13SBarry Smith   B->factor     = 0;
2287273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2288273d9f13SBarry Smith 
2289273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2290273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
2291273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
2292273d9f13SBarry Smith 
2293273d9f13SBarry Smith   /* build local table of row and column ownerships */
2294899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2295273d9f13SBarry Smith 
2296273d9f13SBarry Smith   /* build cache for off array entries formed */
2297273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
2298273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2299273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2300273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2301273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2302273d9f13SBarry Smith 
2303cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2304273d9f13SBarry Smith   /* stuff for MatSetValues_XXX in single precision */
230564a35ccbSBarry Smith   b->setvalueslen     = 0;
2306273d9f13SBarry Smith   b->setvaluescopy    = PETSC_NULL;
2307273d9f13SBarry Smith #endif
2308273d9f13SBarry Smith 
2309273d9f13SBarry Smith   /* stuff used in block assembly */
2310273d9f13SBarry Smith   b->barray       = 0;
2311273d9f13SBarry Smith 
2312273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2313273d9f13SBarry Smith   b->lvec         = 0;
2314273d9f13SBarry Smith   b->Mvctx        = 0;
2315273d9f13SBarry Smith 
2316273d9f13SBarry Smith   /* stuff for MatGetRow() */
2317273d9f13SBarry Smith   b->rowindices   = 0;
2318273d9f13SBarry Smith   b->rowvalues    = 0;
2319273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2320273d9f13SBarry Smith 
2321273d9f13SBarry Smith   /* hash table stuff */
2322273d9f13SBarry Smith   b->ht           = 0;
2323273d9f13SBarry Smith   b->hd           = 0;
2324273d9f13SBarry Smith   b->ht_size      = 0;
2325273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2326273d9f13SBarry Smith   b->ht_fact      = 0;
2327273d9f13SBarry Smith   b->ht_total_ct  = 0;
2328273d9f13SBarry Smith   b->ht_insert_ct = 0;
2329273d9f13SBarry Smith 
233077925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
23318c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2332273d9f13SBarry Smith     if (flg) {
2333f6275e2eSBarry Smith       PetscReal fact = 1.39;
2334273d9f13SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
23358c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2336273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2337273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2338ae15b995SBarry Smith       ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2339273d9f13SBarry Smith     }
23408c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
23418c07d4e3SBarry Smith 
2342273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2343273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2344273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2345273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2346273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2347273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2348273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2349273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2350273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2351a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2352a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2353a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2354aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
235544ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
2356aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
235792b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
235892b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
235992b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
23605bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
23615bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
23625bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
236317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
2364273d9f13SBarry Smith   PetscFunctionReturn(0);
2365273d9f13SBarry Smith }
2366273d9f13SBarry Smith EXTERN_C_END
2367273d9f13SBarry Smith 
2368209238afSKris Buschelman /*MC
2369002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2370209238afSKris Buschelman 
2371209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2372209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2373209238afSKris Buschelman 
2374209238afSKris Buschelman    Options Database Keys:
2375209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2376209238afSKris Buschelman 
2377209238afSKris Buschelman   Level: beginner
2378209238afSKris Buschelman 
2379aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2380209238afSKris Buschelman M*/
2381209238afSKris Buschelman 
2382209238afSKris Buschelman EXTERN_C_BEGIN
2383209238afSKris Buschelman #undef __FUNCT__
2384209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2385be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2386dfbe8321SBarry Smith {
23876849ba73SBarry Smith   PetscErrorCode ierr;
2388b24ad042SBarry Smith   PetscMPIInt    size;
2389209238afSKris Buschelman 
2390209238afSKris Buschelman   PetscFunctionBegin;
2391209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
2392209238afSKris Buschelman   if (size == 1) {
2393209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2394209238afSKris Buschelman   } else {
2395209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2396209238afSKris Buschelman   }
2397209238afSKris Buschelman   PetscFunctionReturn(0);
2398209238afSKris Buschelman }
2399209238afSKris Buschelman EXTERN_C_END
2400209238afSKris Buschelman 
24014a2ae208SSatish Balay #undef __FUNCT__
24024a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2403273d9f13SBarry Smith /*@C
2404aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2405273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2406273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2407273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2408273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2409273d9f13SBarry Smith 
2410273d9f13SBarry Smith    Collective on Mat
2411273d9f13SBarry Smith 
2412273d9f13SBarry Smith    Input Parameters:
2413273d9f13SBarry Smith +  A - the matrix
2414273d9f13SBarry Smith .  bs   - size of blockk
2415273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2416273d9f13SBarry Smith            submatrix  (same for all local rows)
2417273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2418273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2419273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2420273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2421273d9f13SBarry Smith            submatrix (same for all local rows).
2422273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2423273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2424273d9f13SBarry Smith            each block row) or PETSC_NULL.
2425273d9f13SBarry Smith 
242649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2427273d9f13SBarry Smith 
2428273d9f13SBarry Smith    Options Database Keys:
24298c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
24308c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
2431273d9f13SBarry Smith 
2432273d9f13SBarry Smith    Notes:
2433273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2434273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2435273d9f13SBarry Smith 
2436273d9f13SBarry Smith    Storage Information:
2437273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2438273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2439273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2440273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2441273d9f13SBarry Smith 
2442273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2443273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2444273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2445273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2446273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2447273d9f13SBarry Smith 
2448273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2449273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2450273d9f13SBarry Smith 
2451273d9f13SBarry Smith .vb
2452273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2453273d9f13SBarry Smith           -------------------
2454273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2455273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2456273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2457273d9f13SBarry Smith           -------------------
2458273d9f13SBarry Smith .ve
2459273d9f13SBarry Smith 
2460273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2461273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2462273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2463273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2464273d9f13SBarry Smith 
2465273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2466273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2467273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2468273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2469273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2470273d9f13SBarry Smith    matrices.
2471273d9f13SBarry Smith 
2472273d9f13SBarry Smith    Level: intermediate
2473273d9f13SBarry Smith 
2474273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2475273d9f13SBarry Smith 
2476aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2477273d9f13SBarry Smith @*/
2478be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2479273d9f13SBarry Smith {
2480b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2481273d9f13SBarry Smith 
2482273d9f13SBarry Smith   PetscFunctionBegin;
2483a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2484a23d5eceSKris Buschelman   if (f) {
2485a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2486273d9f13SBarry Smith   }
2487273d9f13SBarry Smith   PetscFunctionReturn(0);
2488273d9f13SBarry Smith }
2489273d9f13SBarry Smith 
24904a2ae208SSatish Balay #undef __FUNCT__
24914a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
249279bdfe76SSatish Balay /*@C
249379bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
249479bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
249579bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
249679bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
249779bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
249879bdfe76SSatish Balay 
2499db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2500db81eaa0SLois Curfman McInnes 
250179bdfe76SSatish Balay    Input Parameters:
2502db81eaa0SLois Curfman McInnes +  comm - MPI communicator
250379bdfe76SSatish Balay .  bs   - size of blockk
250479bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
250592e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
250692e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
250792e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
250892e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
250992e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2510be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2511be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
251247a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
251379bdfe76SSatish Balay            submatrix  (same for all local rows)
251447a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
251592e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2516db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
251747a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
251879bdfe76SSatish Balay            submatrix (same for all local rows).
251947a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
252092e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
252192e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
252279bdfe76SSatish Balay 
252379bdfe76SSatish Balay    Output Parameter:
252479bdfe76SSatish Balay .  A - the matrix
252579bdfe76SSatish Balay 
2526db81eaa0SLois Curfman McInnes    Options Database Keys:
25278c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
25288c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
25293ffaccefSLois Curfman McInnes 
2530b259b22eSLois Curfman McInnes    Notes:
253149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
253249a6f317SBarry Smith 
253347a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
253447a75d0bSBarry Smith 
253579bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
253679bdfe76SSatish Balay    (possibly both).
253779bdfe76SSatish Balay 
2538be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2539be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2540be79a94dSBarry Smith 
254179bdfe76SSatish Balay    Storage Information:
254279bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
254379bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
254479bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
254579bdfe76SSatish Balay    local matrix (a rectangular submatrix).
254679bdfe76SSatish Balay 
254779bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
254879bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
254979bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
255079bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
255179bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
255279bdfe76SSatish Balay 
255379bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
255479bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
255579bdfe76SSatish Balay 
2556db81eaa0SLois Curfman McInnes .vb
2557db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2558db81eaa0SLois Curfman McInnes           -------------------
2559db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2560db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2561db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2562db81eaa0SLois Curfman McInnes           -------------------
2563db81eaa0SLois Curfman McInnes .ve
256479bdfe76SSatish Balay 
256579bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
256679bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
256779bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
256857b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
256979bdfe76SSatish Balay 
2570d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2571d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
257279bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
257392e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
257492e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
25756da5968aSLois Curfman McInnes    matrices.
257679bdfe76SSatish Balay 
2577027ccd11SLois Curfman McInnes    Level: intermediate
2578027ccd11SLois Curfman McInnes 
257992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
258079bdfe76SSatish Balay 
2581aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
258279bdfe76SSatish Balay @*/
2583be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
258479bdfe76SSatish Balay {
25856849ba73SBarry Smith   PetscErrorCode ierr;
2586b24ad042SBarry Smith   PetscMPIInt    size;
258779bdfe76SSatish Balay 
2588d64ed03dSBarry Smith   PetscFunctionBegin;
2589f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2590f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2591d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2592273d9f13SBarry Smith   if (size > 1) {
2593273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2594273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2595273d9f13SBarry Smith   } else {
2596273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2597273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
25983914022bSBarry Smith   }
25993a40ed3dSBarry Smith   PetscFunctionReturn(0);
260079bdfe76SSatish Balay }
2601026e39d0SSatish Balay 
26024a2ae208SSatish Balay #undef __FUNCT__
26034a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
26046849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
26050ac07820SSatish Balay {
26060ac07820SSatish Balay   Mat            mat;
26070ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2608dfbe8321SBarry Smith   PetscErrorCode ierr;
2609b24ad042SBarry Smith   PetscInt       len=0;
26100ac07820SSatish Balay 
2611d64ed03dSBarry Smith   PetscFunctionBegin;
26120ac07820SSatish Balay   *newmat       = 0;
2613f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2614899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2615be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
26161d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
26177fff6886SHong Zhang 
26184beb1cfeSHong Zhang   mat->factor       = matin->factor;
2619273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
26200ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
26217fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26227fff6886SHong Zhang 
2623273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2624899cda47SBarry Smith   mat->rmap.bs  = matin->rmap.bs;
26250ac07820SSatish Balay   a->bs2   = oldmat->bs2;
26260ac07820SSatish Balay   a->mbs   = oldmat->mbs;
26270ac07820SSatish Balay   a->nbs   = oldmat->nbs;
26280ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
26290ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
26300ac07820SSatish Balay 
2631899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2632899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2633899cda47SBarry Smith 
26340ac07820SSatish Balay   a->size         = oldmat->size;
26350ac07820SSatish Balay   a->rank         = oldmat->rank;
2636aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2637aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2638aef5e8e0SSatish Balay   a->rowindices   = 0;
26390ac07820SSatish Balay   a->rowvalues    = 0;
26400ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
264130793edcSSatish Balay   a->barray       = 0;
2642899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2643899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2644899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2645899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
26460ac07820SSatish Balay 
2647133cdb44SSatish Balay   /* hash table stuff */
2648133cdb44SSatish Balay   a->ht           = 0;
2649133cdb44SSatish Balay   a->hd           = 0;
2650133cdb44SSatish Balay   a->ht_size      = 0;
2651133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
265225fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2653133cdb44SSatish Balay   a->ht_total_ct  = 0;
2654133cdb44SSatish Balay   a->ht_insert_ct = 0;
2655133cdb44SSatish Balay 
2656899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
26578798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2658899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
26590ac07820SSatish Balay   if (oldmat->colmap) {
2660aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
26610f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
266248e59246SSatish Balay #else
2663b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
266452e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2665b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
266648e59246SSatish Balay #endif
26670ac07820SSatish Balay   } else a->colmap = 0;
26684beb1cfeSHong Zhang 
26690ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2670b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
267152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2672b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
26730ac07820SSatish Balay   } else a->garray = 0;
26740ac07820SSatish Balay 
26750ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
267652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
26770ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
267852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
26797fff6886SHong Zhang 
26802e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
268152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
26822e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
268352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2684b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
26850ac07820SSatish Balay   *newmat = mat;
26864beb1cfeSHong Zhang 
26873a40ed3dSBarry Smith   PetscFunctionReturn(0);
26880ac07820SSatish Balay }
268957b952d6SSatish Balay 
2690e090d566SSatish Balay #include "petscsys.h"
269157b952d6SSatish Balay 
26924a2ae208SSatish Balay #undef __FUNCT__
26934a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2694f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
269557b952d6SSatish Balay {
269657b952d6SSatish Balay   Mat            A;
26976849ba73SBarry Smith   PetscErrorCode ierr;
2698b24ad042SBarry Smith   int            fd;
2699b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
270087828ca2SBarry Smith   PetscScalar    *vals,*buf;
270157b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
270257b952d6SSatish Balay   MPI_Status     status;
2703b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2704b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2705910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
2706167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2707dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2708910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
2709dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
271057b952d6SSatish Balay 
2711d64ed03dSBarry Smith   PetscFunctionBegin;
271277925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
27138c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
27148c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
271557b952d6SSatish Balay 
2716d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2717d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
271857b952d6SSatish Balay   if (!rank) {
2719b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2720e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2721552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
27226c5fab8fSBarry Smith   }
2723d64ed03dSBarry Smith 
2724b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
272557b952d6SSatish Balay   M = header[1]; N = header[2];
272657b952d6SSatish Balay 
272729bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
272857b952d6SSatish Balay 
272957b952d6SSatish Balay   /*
273057b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
273157b952d6SSatish Balay      divisible by the blocksize
273257b952d6SSatish Balay   */
273357b952d6SSatish Balay   Mbs        = M/bs;
2734dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
273557b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
273657b952d6SSatish Balay   else                  Mbs++;
273757b952d6SSatish Balay   if (extra_rows && !rank) {
2738ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
273957b952d6SSatish Balay   }
2740537820f0SBarry Smith 
274157b952d6SSatish Balay   /* determine ownership of all rows */
274257b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
274357b952d6SSatish Balay   m          = mbs*bs;
2744dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2745b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2746167e7480SBarry Smith 
2747167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2748167e7480SBarry Smith   if (!rank) {
2749167e7480SBarry Smith     mmax = rowners[1];
2750167e7480SBarry Smith     for (i=2; i<size; i++) {
2751167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2752167e7480SBarry Smith     }
2753ca02efcfSSatish Balay     mmax*=bs;
2754167e7480SBarry Smith   } else mmax = m;
2755167e7480SBarry Smith 
275657b952d6SSatish Balay   rowners[0] = 0;
2757cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2758cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
275957b952d6SSatish Balay   rstart = rowners[rank];
276057b952d6SSatish Balay   rend   = rowners[rank+1];
276157b952d6SSatish Balay 
276257b952d6SSatish Balay   /* distribute row lengths to all processors */
276319c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
276457b952d6SSatish Balay   if (!rank) {
2765dc231df0SBarry Smith     mend = m;
2766dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2767dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2768dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2769dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2770b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2771b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2772dc231df0SBarry Smith     for (j=0; j<m; j++) {
2773dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2774dc231df0SBarry Smith     }
2775dc231df0SBarry Smith     for (i=1; i<size; i++) {
2776dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2777dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2778dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2779dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2780dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2781dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
278257b952d6SSatish Balay         procsnz[i] += rowlengths[j];
278357b952d6SSatish Balay       }
2784dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
278557b952d6SSatish Balay     }
2786606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2787dc231df0SBarry Smith   } else {
2788dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2789dc231df0SBarry Smith   }
279057b952d6SSatish Balay 
2791dc231df0SBarry Smith   if (!rank) {
279257b952d6SSatish Balay     /* determine max buffer needed and allocate it */
27938a8e0b3aSBarry Smith     maxnz = procsnz[0];
2794cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
279557b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
279657b952d6SSatish Balay     }
2797b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
279857b952d6SSatish Balay 
279957b952d6SSatish Balay     /* read in my part of the matrix column indices  */
280057b952d6SSatish Balay     nz     = procsnz[0];
280119c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
280257b952d6SSatish Balay     mycols = ibuf;
2803cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2804e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2805cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2806cee3aa6bSSatish Balay 
280757b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
280857b952d6SSatish Balay     for (i=1; i<size-1; i++) {
280957b952d6SSatish Balay       nz   = procsnz[i];
2810e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2811b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
281257b952d6SSatish Balay     }
281357b952d6SSatish Balay     /* read in the stuff for the last proc */
281457b952d6SSatish Balay     if (size != 1) {
281557b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2816e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
281757b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2818b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
281957b952d6SSatish Balay     }
2820606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2821d64ed03dSBarry Smith   } else {
282257b952d6SSatish Balay     /* determine buffer space needed for message */
282357b952d6SSatish Balay     nz = 0;
282457b952d6SSatish Balay     for (i=0; i<m; i++) {
282557b952d6SSatish Balay       nz += locrowlens[i];
282657b952d6SSatish Balay     }
282719c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
282857b952d6SSatish Balay     mycols = ibuf;
282957b952d6SSatish Balay     /* receive message of column indices*/
2830b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2831b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
283229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
283357b952d6SSatish Balay   }
283457b952d6SSatish Balay 
283557b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2836dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2837dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2838dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2839dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2840dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
284157b952d6SSatish Balay   rowcount = 0; nzcount = 0;
284257b952d6SSatish Balay   for (i=0; i<mbs; i++) {
284357b952d6SSatish Balay     dcount  = 0;
284457b952d6SSatish Balay     odcount = 0;
284557b952d6SSatish Balay     for (j=0; j<bs; j++) {
284657b952d6SSatish Balay       kmax = locrowlens[rowcount];
284757b952d6SSatish Balay       for (k=0; k<kmax; k++) {
284857b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
284957b952d6SSatish Balay         if (!mask[tmp]) {
285057b952d6SSatish Balay           mask[tmp] = 1;
285157b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
285257b952d6SSatish Balay           else masked1[dcount++] = tmp;
285357b952d6SSatish Balay         }
285457b952d6SSatish Balay       }
285557b952d6SSatish Balay       rowcount++;
285657b952d6SSatish Balay     }
2857cee3aa6bSSatish Balay 
285857b952d6SSatish Balay     dlens[i]  = dcount;
285957b952d6SSatish Balay     odlens[i] = odcount;
2860cee3aa6bSSatish Balay 
286157b952d6SSatish Balay     /* zero out the mask elements we set */
286257b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
286357b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
286457b952d6SSatish Balay   }
2865cee3aa6bSSatish Balay 
286657b952d6SSatish Balay   /* create our matrix */
2867f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2868f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
286978ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
287078ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
287178ae41b4SKris Buschelman 
287278ae41b4SKris Buschelman   /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */
2873dc231df0SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
287457b952d6SSatish Balay 
287557b952d6SSatish Balay   if (!rank) {
287619c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
287757b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
287857b952d6SSatish Balay     nz = procsnz[0];
287957b952d6SSatish Balay     vals = buf;
2880cee3aa6bSSatish Balay     mycols = ibuf;
2881cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2882e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2883cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2884537820f0SBarry Smith 
288557b952d6SSatish Balay     /* insert into matrix */
288657b952d6SSatish Balay     jj      = rstart*bs;
288757b952d6SSatish Balay     for (i=0; i<m; i++) {
2888dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
288957b952d6SSatish Balay       mycols += locrowlens[i];
289057b952d6SSatish Balay       vals   += locrowlens[i];
289157b952d6SSatish Balay       jj++;
289257b952d6SSatish Balay     }
289357b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
289457b952d6SSatish Balay     for (i=1; i<size-1; i++) {
289557b952d6SSatish Balay       nz   = procsnz[i];
289657b952d6SSatish Balay       vals = buf;
2897e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2898ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
289957b952d6SSatish Balay     }
290057b952d6SSatish Balay     /* the last proc */
290157b952d6SSatish Balay     if (size != 1){
290257b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2903cee3aa6bSSatish Balay       vals = buf;
2904e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
290557b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2906ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
290757b952d6SSatish Balay     }
2908606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2909d64ed03dSBarry Smith   } else {
291057b952d6SSatish Balay     /* receive numeric values */
291119c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
291257b952d6SSatish Balay 
291357b952d6SSatish Balay     /* receive message of values*/
291457b952d6SSatish Balay     vals   = buf;
2915cee3aa6bSSatish Balay     mycols = ibuf;
2916ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2917ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
291829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
291957b952d6SSatish Balay 
292057b952d6SSatish Balay     /* insert into matrix */
292157b952d6SSatish Balay     jj      = rstart*bs;
2922cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2923dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
292457b952d6SSatish Balay       mycols += locrowlens[i];
292557b952d6SSatish Balay       vals   += locrowlens[i];
292657b952d6SSatish Balay       jj++;
292757b952d6SSatish Balay     }
292857b952d6SSatish Balay   }
2929606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2930606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2931606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2932dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2933dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2934dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
29356d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29366d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
293778ae41b4SKris Buschelman 
293878ae41b4SKris Buschelman   *newmat = A;
29393a40ed3dSBarry Smith   PetscFunctionReturn(0);
294057b952d6SSatish Balay }
294157b952d6SSatish Balay 
29424a2ae208SSatish Balay #undef __FUNCT__
29434a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2944133cdb44SSatish Balay /*@
2945133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2946133cdb44SSatish Balay 
2947133cdb44SSatish Balay    Input Parameters:
2948133cdb44SSatish Balay .  mat  - the matrix
2949133cdb44SSatish Balay .  fact - factor
2950133cdb44SSatish Balay 
2951fee21e36SBarry Smith    Collective on Mat
2952fee21e36SBarry Smith 
29538c890885SBarry Smith    Level: advanced
29548c890885SBarry Smith 
2955133cdb44SSatish Balay   Notes:
29568c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
2957133cdb44SSatish Balay 
2958133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2959133cdb44SSatish Balay 
2960133cdb44SSatish Balay .seealso: MatSetOption()
2961133cdb44SSatish Balay @*/
2962be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2963133cdb44SSatish Balay {
2964dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
29655bf65638SKris Buschelman 
29665bf65638SKris Buschelman   PetscFunctionBegin;
29675bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
29685bf65638SKris Buschelman   if (f) {
29695bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
29705bf65638SKris Buschelman   }
29715bf65638SKris Buschelman   PetscFunctionReturn(0);
29725bf65638SKris Buschelman }
29735bf65638SKris Buschelman 
2974be1d678aSKris Buschelman EXTERN_C_BEGIN
29755bf65638SKris Buschelman #undef __FUNCT__
29765bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2977be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
29785bf65638SKris Buschelman {
297925fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2980133cdb44SSatish Balay 
2981133cdb44SSatish Balay   PetscFunctionBegin;
2982133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2983133cdb44SSatish Balay   baij->ht_fact = fact;
2984133cdb44SSatish Balay   PetscFunctionReturn(0);
2985133cdb44SSatish Balay }
2986be1d678aSKris Buschelman EXTERN_C_END
2987f2a5309cSSatish Balay 
29884a2ae208SSatish Balay #undef __FUNCT__
29894a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2990be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2991f2a5309cSSatish Balay {
2992f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2993f2a5309cSSatish Balay   PetscFunctionBegin;
2994f2a5309cSSatish Balay   *Ad     = a->A;
2995f2a5309cSSatish Balay   *Ao     = a->B;
2996195d93cdSBarry Smith   *colmap = a->garray;
2997f2a5309cSSatish Balay   PetscFunctionReturn(0);
2998f2a5309cSSatish Balay }
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