xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 00de8ff0695ff394d09a2c60082aeaab5870b6e2)
1be1d678aSKris Buschelman 
22593348eSBarry Smith /*
3b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
42593348eSBarry Smith   matrix storage format.
52593348eSBarry Smith */
6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h>  /*I   "petscmat.h"  I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8c6db04a5SJed Brown #include <../src/mat/blockinvert.h>
9b01c7715SBarry Smith 
1043516a2dSKris Buschelman 
1143516a2dSKris Buschelman #undef __FUNCT__
12b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ"
13713ccfa9SJed Brown PetscErrorCode  MatInvertBlockDiagonal_SeqBAIJ(Mat A,const PetscScalar **values)
14b01c7715SBarry Smith {
15b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
166849ba73SBarry Smith   PetscErrorCode ierr;
17de80f912SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs,ipvt[5],bs2 = bs*bs,*v_pivots;
18de80f912SBarry Smith   MatScalar      *v    = a->a,*odiag,*diag,*mdiag,work[25],*v_work;
1962bba022SBarry Smith   PetscReal      shift = 0.0;
20b01c7715SBarry Smith 
21b01c7715SBarry Smith   PetscFunctionBegin;
229797317bSBarry Smith   if (a->idiagvalid) {
239797317bSBarry Smith     if (values) *values = a->idiag;
249797317bSBarry Smith     PetscFunctionReturn(0);
259797317bSBarry Smith   }
26b01c7715SBarry Smith   ierr        = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
27b01c7715SBarry Smith   diag_offset = a->diag;
28b01c7715SBarry Smith   if (!a->idiag) {
29de80f912SBarry Smith     ierr = PetscMalloc(2*bs2*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr);
30de80f912SBarry Smith     ierr = PetscLogObjectMemory(A,2*bs2*mbs*sizeof(PetscScalar));CHKERRQ(ierr);
31b01c7715SBarry Smith   }
32b01c7715SBarry Smith   diag  = a->idiag;
33de80f912SBarry Smith   mdiag = a->idiag+bs2*mbs;
34bbead8a2SBarry Smith   if (values) *values = a->idiag;
35b01c7715SBarry Smith   /* factor and invert each block */
36521d7252SBarry Smith   switch (bs) {
37ab040260SJed Brown   case 1:
38ab040260SJed Brown     for (i=0; i<mbs; i++) {
39ab040260SJed Brown       odiag    = v + 1*diag_offset[i];
40ab040260SJed Brown       diag[0]  = odiag[0];
41ab040260SJed Brown       mdiag[0] = odiag[0];
42d4a378daSJed Brown       diag[0]  = (PetscScalar)1.0 / (diag[0] + shift);
43ab040260SJed Brown       diag    += 1;
44ab040260SJed Brown       mdiag   += 1;
45ab040260SJed Brown     }
46ab040260SJed Brown     break;
47b01c7715SBarry Smith   case 2:
48b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
49b01c7715SBarry Smith       odiag    = v + 4*diag_offset[i];
50b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
51b01c7715SBarry Smith       mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
5296b95a6bSBarry Smith       ierr     = PetscKernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr);
53b01c7715SBarry Smith       diag    += 4;
54b01c7715SBarry Smith       mdiag   += 4;
55b01c7715SBarry Smith     }
56b01c7715SBarry Smith     break;
57b01c7715SBarry Smith   case 3:
58b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
59b01c7715SBarry Smith       odiag    = v + 9*diag_offset[i];
60b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
61b01c7715SBarry Smith       diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
62b01c7715SBarry Smith       diag[8]  = odiag[8];
63b01c7715SBarry Smith       mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
64b01c7715SBarry Smith       mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7];
65b01c7715SBarry Smith       mdiag[8] = odiag[8];
6696b95a6bSBarry Smith       ierr     = PetscKernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr);
67b01c7715SBarry Smith       diag    += 9;
68b01c7715SBarry Smith       mdiag   += 9;
69b01c7715SBarry Smith     }
70b01c7715SBarry Smith     break;
71b01c7715SBarry Smith   case 4:
72b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
73b01c7715SBarry Smith       odiag  = v + 16*diag_offset[i];
74b01c7715SBarry Smith       ierr   = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
75b01c7715SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
7696b95a6bSBarry Smith       ierr   = PetscKernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr);
77b01c7715SBarry Smith       diag  += 16;
78b01c7715SBarry Smith       mdiag += 16;
79b01c7715SBarry Smith     }
80b01c7715SBarry Smith     break;
81b01c7715SBarry Smith   case 5:
82b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
83b01c7715SBarry Smith       odiag  = v + 25*diag_offset[i];
84b01c7715SBarry Smith       ierr   = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
85b01c7715SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
8696b95a6bSBarry Smith       ierr   = PetscKernel_A_gets_inverse_A_5(diag,ipvt,work,shift);CHKERRQ(ierr);
87b01c7715SBarry Smith       diag  += 25;
88b01c7715SBarry Smith       mdiag += 25;
89b01c7715SBarry Smith     }
90b01c7715SBarry Smith     break;
91d49b2adcSBarry Smith   case 6:
92d49b2adcSBarry Smith     for (i=0; i<mbs; i++) {
93d49b2adcSBarry Smith       odiag  = v + 36*diag_offset[i];
94d49b2adcSBarry Smith       ierr   = PetscMemcpy(diag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
95d49b2adcSBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
9696b95a6bSBarry Smith       ierr   = PetscKernel_A_gets_inverse_A_6(diag,shift);CHKERRQ(ierr);
97d49b2adcSBarry Smith       diag  += 36;
98d49b2adcSBarry Smith       mdiag += 36;
99d49b2adcSBarry Smith     }
100d49b2adcSBarry Smith     break;
101de80f912SBarry Smith   case 7:
102de80f912SBarry Smith     for (i=0; i<mbs; i++) {
103de80f912SBarry Smith       odiag  = v + 49*diag_offset[i];
104de80f912SBarry Smith       ierr   = PetscMemcpy(diag,odiag,49*sizeof(PetscScalar));CHKERRQ(ierr);
105de80f912SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,49*sizeof(PetscScalar));CHKERRQ(ierr);
10696b95a6bSBarry Smith       ierr   = PetscKernel_A_gets_inverse_A_7(diag,shift);CHKERRQ(ierr);
107de80f912SBarry Smith       diag  += 49;
108de80f912SBarry Smith       mdiag += 49;
109de80f912SBarry Smith     }
110de80f912SBarry Smith     break;
111b01c7715SBarry Smith   default:
112de80f912SBarry Smith     ierr = PetscMalloc2(bs,MatScalar,&v_work,bs,PetscInt,&v_pivots);CHKERRQ(ierr);
113de80f912SBarry Smith     for (i=0; i<mbs; i++) {
114de80f912SBarry Smith       odiag  = v + bs2*diag_offset[i];
115de80f912SBarry Smith       ierr   = PetscMemcpy(diag,odiag,bs2*sizeof(PetscScalar));CHKERRQ(ierr);
116de80f912SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,bs2*sizeof(PetscScalar));CHKERRQ(ierr);
11796b95a6bSBarry Smith       ierr   = PetscKernel_A_gets_inverse_A(bs,diag,v_pivots,v_work);CHKERRQ(ierr);
118de80f912SBarry Smith       diag  += bs2;
119de80f912SBarry Smith       mdiag += bs2;
120de80f912SBarry Smith     }
121de80f912SBarry Smith     ierr = PetscFree2(v_work,v_pivots);CHKERRQ(ierr);
122b01c7715SBarry Smith   }
123b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
124b01c7715SBarry Smith   PetscFunctionReturn(0);
125b01c7715SBarry Smith }
126b01c7715SBarry Smith 
127b01c7715SBarry Smith #undef __FUNCT__
12841f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_1"
12941f059aeSBarry Smith PetscErrorCode MatSOR_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1306d3beeddSMatthew Knepley {
1316d3beeddSMatthew Knepley   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1326d3beeddSMatthew Knepley   PetscScalar       *x,x1,s1;
133dd6ea824SBarry Smith   const PetscScalar *b;
134dd6ea824SBarry Smith   const MatScalar   *aa = a->a, *idiag,*mdiag,*v;
1356d3beeddSMatthew Knepley   PetscErrorCode    ierr;
13604fbf559SBarry Smith   PetscInt          m = a->mbs,i,i2,nz,j;
1376d3beeddSMatthew Knepley   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
1386d3beeddSMatthew Knepley 
1396d3beeddSMatthew Knepley   PetscFunctionBegin;
140e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
1416d3beeddSMatthew Knepley   its = its*lits;
142ce94432eSBarry Smith   if (its <= 0) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
143e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
144e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
145e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
146e32f2f54SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
1476d3beeddSMatthew Knepley 
1480298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
1496d3beeddSMatthew Knepley 
1506d3beeddSMatthew Knepley   diag  = a->diag;
1516d3beeddSMatthew Knepley   idiag = a->idiag;
1526d3beeddSMatthew Knepley   ierr  = VecGetArray(xx,&x);CHKERRQ(ierr);
1533649974fSBarry Smith   ierr  = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1546d3beeddSMatthew Knepley 
1556d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
1566d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
1576d3beeddSMatthew Knepley       x[0]   = b[0]*idiag[0];
1586d3beeddSMatthew Knepley       i2     = 1;
1596d3beeddSMatthew Knepley       idiag += 1;
1606d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
1616d3beeddSMatthew Knepley         v  = aa + ai[i];
1626d3beeddSMatthew Knepley         vi = aj + ai[i];
1636d3beeddSMatthew Knepley         nz = diag[i] - ai[i];
1646d3beeddSMatthew Knepley         s1 = b[i2];
16526fbe8dcSKarl Rupp         for (j=0; j<nz; j++) s1 -= v[j]*x[vi[j]];
1666d3beeddSMatthew Knepley         x[i2]  = idiag[0]*s1;
1676d3beeddSMatthew Knepley         idiag += 1;
1686d3beeddSMatthew Knepley         i2    += 1;
1696d3beeddSMatthew Knepley       }
1706d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
1716d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1726d3beeddSMatthew Knepley     }
1736d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
1746d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1756d3beeddSMatthew Knepley       i2    = 0;
1766d3beeddSMatthew Knepley       mdiag = a->idiag+a->mbs;
1776d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
1786d3beeddSMatthew Knepley         x1     = x[i2];
1796d3beeddSMatthew Knepley         x[i2]  = mdiag[0]*x1;
1806d3beeddSMatthew Knepley         mdiag += 1;
1816d3beeddSMatthew Knepley         i2    += 1;
1826d3beeddSMatthew Knepley       }
1836d3beeddSMatthew Knepley       ierr = PetscLogFlops(m);CHKERRQ(ierr);
1846d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
185d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
1866d3beeddSMatthew Knepley     }
1876d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1886d3beeddSMatthew Knepley       idiag  = a->idiag+a->mbs - 1;
1896d3beeddSMatthew Knepley       i2     = m - 1;
1906d3beeddSMatthew Knepley       x1     = x[i2];
1916d3beeddSMatthew Knepley       x[i2]  = idiag[0]*x1;
1926d3beeddSMatthew Knepley       idiag -= 1;
1936d3beeddSMatthew Knepley       i2    -= 1;
1946d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
1956d3beeddSMatthew Knepley         v  = aa + (diag[i]+1);
1966d3beeddSMatthew Knepley         vi = aj + diag[i] + 1;
1976d3beeddSMatthew Knepley         nz = ai[i+1] - diag[i] - 1;
1986d3beeddSMatthew Knepley         s1 = x[i2];
19926fbe8dcSKarl Rupp         for (j=0; j<nz; j++) s1 -= v[j]*x[vi[j]];
2006d3beeddSMatthew Knepley         x[i2]  = idiag[0]*s1;
201ab040260SJed Brown         idiag -= 1;
2026d3beeddSMatthew Knepley         i2    -= 1;
2036d3beeddSMatthew Knepley       }
2046d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
2056d3beeddSMatthew Knepley     }
206f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
2076d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2083649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2096d3beeddSMatthew Knepley   PetscFunctionReturn(0);
2106d3beeddSMatthew Knepley }
2116d3beeddSMatthew Knepley 
2126d3beeddSMatthew Knepley #undef __FUNCT__
21341f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_2"
21441f059aeSBarry Smith PetscErrorCode MatSOR_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
215b01c7715SBarry Smith {
216b01c7715SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
217b01c7715SBarry Smith   PetscScalar       *x,x1,x2,s1,s2;
218dd6ea824SBarry Smith   const PetscScalar *b;
219dd6ea824SBarry Smith   const MatScalar   *v,*aa = a->a, *idiag,*mdiag;
220dfbe8321SBarry Smith   PetscErrorCode    ierr;
22104fbf559SBarry Smith   PetscInt          m = a->mbs,i,i2,nz,idx,j,it;
222c1ac3661SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
223b01c7715SBarry Smith 
224b01c7715SBarry Smith   PetscFunctionBegin;
225e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
226b01c7715SBarry Smith   its = its*lits;
227e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
228e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
229e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
230e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
231e32f2f54SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
232b01c7715SBarry Smith 
2330298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
234b01c7715SBarry Smith 
235b01c7715SBarry Smith   diag  = a->diag;
236b01c7715SBarry Smith   idiag = a->idiag;
2371ebc52fbSHong Zhang   ierr  = VecGetArray(xx,&x);CHKERRQ(ierr);
2383649974fSBarry Smith   ierr  = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
239b01c7715SBarry Smith 
240b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
241b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
242b01c7715SBarry Smith       x[0]   = b[0]*idiag[0] + b[1]*idiag[2];
243b01c7715SBarry Smith       x[1]   = b[0]*idiag[1] + b[1]*idiag[3];
244b01c7715SBarry Smith       i2     = 2;
245b01c7715SBarry Smith       idiag += 4;
246b01c7715SBarry Smith       for (i=1; i<m; i++) {
247b01c7715SBarry Smith         v  = aa + 4*ai[i];
248b01c7715SBarry Smith         vi = aj + ai[i];
249b01c7715SBarry Smith         nz = diag[i] - ai[i];
250b01c7715SBarry Smith         s1 = b[i2]; s2 = b[i2+1];
25104fbf559SBarry Smith         for (j=0; j<nz; j++) {
25204fbf559SBarry Smith           idx = 2*vi[j];
25304fbf559SBarry Smith           it  = 4*j;
254b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx];
25504fbf559SBarry Smith           s1 -= v[it]*x1 + v[it+2]*x2;
25604fbf559SBarry Smith           s2 -= v[it+1]*x1 + v[it+3]*x2;
257b01c7715SBarry Smith         }
258b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[2]*s2;
259b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
260b01c7715SBarry Smith         idiag  += 4;
261b01c7715SBarry Smith         i2     += 2;
262b01c7715SBarry Smith       }
263b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
264dc0b31edSSatish Balay       ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr);
265b01c7715SBarry Smith     }
266b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
267b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
268b01c7715SBarry Smith       i2    = 0;
269b01c7715SBarry Smith       mdiag = a->idiag+4*a->mbs;
270b01c7715SBarry Smith       for (i=0; i<m; i++) {
271b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1];
272b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[2]*x2;
273b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2;
274b01c7715SBarry Smith         mdiag  += 4;
275b01c7715SBarry Smith         i2     += 2;
276b01c7715SBarry Smith       }
277dc0b31edSSatish Balay       ierr = PetscLogFlops(6.0*m);CHKERRQ(ierr);
278b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
279d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
280b01c7715SBarry Smith     }
281b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
282b01c7715SBarry Smith       idiag   = a->idiag+4*a->mbs - 4;
283b01c7715SBarry Smith       i2      = 2*m - 2;
284b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1];
285b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[2]*x2;
286b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[3]*x2;
287b01c7715SBarry Smith       idiag  -= 4;
288b01c7715SBarry Smith       i2     -= 2;
289b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
290b01c7715SBarry Smith         v  = aa + 4*(diag[i]+1);
291b01c7715SBarry Smith         vi = aj + diag[i] + 1;
292b01c7715SBarry Smith         nz = ai[i+1] - diag[i] - 1;
293b01c7715SBarry Smith         s1 = x[i2]; s2 = x[i2+1];
29404fbf559SBarry Smith         for (j=0; j<nz; j++) {
29504fbf559SBarry Smith           idx = 2*vi[j];
29604fbf559SBarry Smith           it  = 4*j;
297b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx];
29804fbf559SBarry Smith           s1 -= v[it]*x1 + v[it+2]*x2;
29904fbf559SBarry Smith           s2 -= v[it+1]*x1 + v[it+3]*x2;
300b01c7715SBarry Smith         }
301b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[2]*s2;
302b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
303b01c7715SBarry Smith         idiag  -= 4;
304b01c7715SBarry Smith         i2     -= 2;
305b01c7715SBarry Smith       }
306dc0b31edSSatish Balay       ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr);
307b01c7715SBarry Smith     }
308f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
3091ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3103649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
311b01c7715SBarry Smith   PetscFunctionReturn(0);
312b01c7715SBarry Smith }
313b01c7715SBarry Smith 
314b01c7715SBarry Smith #undef __FUNCT__
31541f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_3"
31641f059aeSBarry Smith PetscErrorCode MatSOR_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
317b01c7715SBarry Smith {
318b01c7715SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
319b01c7715SBarry Smith   PetscScalar       *x,x1,x2,x3,s1,s2,s3;
320dd6ea824SBarry Smith   const MatScalar   *v,*aa = a->a, *idiag,*mdiag;
321dd6ea824SBarry Smith   const PetscScalar *b;
322dfbe8321SBarry Smith   PetscErrorCode    ierr;
323c1ac3661SBarry Smith   PetscInt          m = a->mbs,i,i2,nz,idx;
324c1ac3661SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
325b01c7715SBarry Smith 
326b01c7715SBarry Smith   PetscFunctionBegin;
327b01c7715SBarry Smith   its = its*lits;
328e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
329e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
330e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
331e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
332e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
333e32f2f54SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
334b01c7715SBarry Smith 
3350298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
336b01c7715SBarry Smith 
337b01c7715SBarry Smith   diag  = a->diag;
338b01c7715SBarry Smith   idiag = a->idiag;
3391ebc52fbSHong Zhang   ierr  = VecGetArray(xx,&x);CHKERRQ(ierr);
3403649974fSBarry Smith   ierr  = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
341b01c7715SBarry Smith 
342b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
343b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
344b01c7715SBarry Smith       x[0]   = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6];
345b01c7715SBarry Smith       x[1]   = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7];
346b01c7715SBarry Smith       x[2]   = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8];
347b01c7715SBarry Smith       i2     = 3;
348b01c7715SBarry Smith       idiag += 9;
349b01c7715SBarry Smith       for (i=1; i<m; i++) {
350b01c7715SBarry Smith         v  = aa + 9*ai[i];
351b01c7715SBarry Smith         vi = aj + ai[i];
352b01c7715SBarry Smith         nz = diag[i] - ai[i];
353b01c7715SBarry Smith         s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2];
354b01c7715SBarry Smith         while (nz--) {
355b01c7715SBarry Smith           idx = 3*(*vi++);
356b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx];x3 = x[2+idx];
357b01c7715SBarry Smith           s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3;
358b01c7715SBarry Smith           s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3;
359b01c7715SBarry Smith           s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3;
360b01c7715SBarry Smith           v  += 9;
361b01c7715SBarry Smith         }
362b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
363b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
364b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
365b01c7715SBarry Smith         idiag  += 9;
366b01c7715SBarry Smith         i2     += 3;
367b01c7715SBarry Smith       }
368b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
369dc0b31edSSatish Balay       ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr);
370b01c7715SBarry Smith     }
371b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
372b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
373b01c7715SBarry Smith       i2    = 0;
374b01c7715SBarry Smith       mdiag = a->idiag+9*a->mbs;
375b01c7715SBarry Smith       for (i=0; i<m; i++) {
376b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
377b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3;
378b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3;
379b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3;
380b01c7715SBarry Smith         mdiag  += 9;
381b01c7715SBarry Smith         i2     += 3;
382b01c7715SBarry Smith       }
383dc0b31edSSatish Balay       ierr = PetscLogFlops(15.0*m);CHKERRQ(ierr);
384b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
385d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
386b01c7715SBarry Smith     }
387b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
388b01c7715SBarry Smith       idiag   = a->idiag+9*a->mbs - 9;
389b01c7715SBarry Smith       i2      = 3*m - 3;
390b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
391b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3;
392b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3;
393b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3;
394b01c7715SBarry Smith       idiag  -= 9;
395b01c7715SBarry Smith       i2     -= 3;
396b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
397b01c7715SBarry Smith         v  = aa + 9*(diag[i]+1);
398b01c7715SBarry Smith         vi = aj + diag[i] + 1;
399b01c7715SBarry Smith         nz = ai[i+1] - diag[i] - 1;
400b01c7715SBarry Smith         s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2];
401b01c7715SBarry Smith         while (nz--) {
402b01c7715SBarry Smith           idx = 3*(*vi++);
403b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx];
404b01c7715SBarry Smith           s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3;
405b01c7715SBarry Smith           s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3;
406b01c7715SBarry Smith           s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3;
407b01c7715SBarry Smith           v  += 9;
408b01c7715SBarry Smith         }
409b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
410b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
411b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
412b01c7715SBarry Smith         idiag  -= 9;
413b01c7715SBarry Smith         i2     -= 3;
414b01c7715SBarry Smith       }
415dc0b31edSSatish Balay       ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr);
416b01c7715SBarry Smith     }
417f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
4181ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4193649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
420b01c7715SBarry Smith   PetscFunctionReturn(0);
421b01c7715SBarry Smith }
422b01c7715SBarry Smith 
423b01c7715SBarry Smith #undef __FUNCT__
42441f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_4"
42541f059aeSBarry Smith PetscErrorCode MatSOR_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
426b01c7715SBarry Smith {
427b01c7715SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
428b01c7715SBarry Smith   PetscScalar       *x,x1,x2,x3,x4,s1,s2,s3,s4;
429dd6ea824SBarry Smith   const MatScalar   *v,*aa = a->a, *idiag,*mdiag;
430dd6ea824SBarry Smith   const PetscScalar *b;
431dfbe8321SBarry Smith   PetscErrorCode    ierr;
432c1ac3661SBarry Smith   PetscInt          m = a->mbs,i,i2,nz,idx;
433c1ac3661SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
434b01c7715SBarry Smith 
435b01c7715SBarry Smith   PetscFunctionBegin;
436e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
437b01c7715SBarry Smith   its = its*lits;
438e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
439e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
440e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
441e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
442e32f2f54SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
443b01c7715SBarry Smith 
4440298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
445b01c7715SBarry Smith 
446b01c7715SBarry Smith   diag  = a->diag;
447b01c7715SBarry Smith   idiag = a->idiag;
4481ebc52fbSHong Zhang   ierr  = VecGetArray(xx,&x);CHKERRQ(ierr);
4493649974fSBarry Smith   ierr  = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
450b01c7715SBarry Smith 
451b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
452b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
453b01c7715SBarry Smith       x[0]   = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8]  + b[3]*idiag[12];
454b01c7715SBarry Smith       x[1]   = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9]  + b[3]*idiag[13];
455b01c7715SBarry Smith       x[2]   = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14];
456b01c7715SBarry Smith       x[3]   = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15];
457b01c7715SBarry Smith       i2     = 4;
458b01c7715SBarry Smith       idiag += 16;
459b01c7715SBarry Smith       for (i=1; i<m; i++) {
460b01c7715SBarry Smith         v  = aa + 16*ai[i];
461b01c7715SBarry Smith         vi = aj + ai[i];
462b01c7715SBarry Smith         nz = diag[i] - ai[i];
463b01c7715SBarry Smith         s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3];
464b01c7715SBarry Smith         while (nz--) {
465b01c7715SBarry Smith           idx = 4*(*vi++);
466b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
467b01c7715SBarry Smith           s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
468b01c7715SBarry Smith           s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
469b01c7715SBarry Smith           s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
470b01c7715SBarry Smith           s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
471b01c7715SBarry Smith           v  += 16;
472b01c7715SBarry Smith         }
473b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
474b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
475b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
476b01c7715SBarry Smith         x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
477b01c7715SBarry Smith         idiag  += 16;
478b01c7715SBarry Smith         i2     += 4;
479b01c7715SBarry Smith       }
480b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
481dc0b31edSSatish Balay       ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr);
482b01c7715SBarry Smith     }
483b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
484b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
485b01c7715SBarry Smith       i2    = 0;
486b01c7715SBarry Smith       mdiag = a->idiag+16*a->mbs;
487b01c7715SBarry Smith       for (i=0; i<m; i++) {
488b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
489b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3  + mdiag[12]*x4;
490b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3  + mdiag[13]*x4;
491b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4;
492b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4;
493b01c7715SBarry Smith         mdiag  += 16;
494b01c7715SBarry Smith         i2     += 4;
495b01c7715SBarry Smith       }
496dc0b31edSSatish Balay       ierr = PetscLogFlops(28.0*m);CHKERRQ(ierr);
497b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
498d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
499b01c7715SBarry Smith     }
500b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
501b01c7715SBarry Smith       idiag   = a->idiag+16*a->mbs - 16;
502b01c7715SBarry Smith       i2      = 4*m - 4;
503b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
504b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3  + idiag[12]*x4;
505b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3  + idiag[13]*x4;
506b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4;
507b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4;
508b01c7715SBarry Smith       idiag  -= 16;
509b01c7715SBarry Smith       i2     -= 4;
510b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
511b01c7715SBarry Smith         v  = aa + 16*(diag[i]+1);
512b01c7715SBarry Smith         vi = aj + diag[i] + 1;
513b01c7715SBarry Smith         nz = ai[i+1] - diag[i] - 1;
514b01c7715SBarry Smith         s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3];
515b01c7715SBarry Smith         while (nz--) {
516b01c7715SBarry Smith           idx = 4*(*vi++);
517b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
518b01c7715SBarry Smith           s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
519b01c7715SBarry Smith           s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
520b01c7715SBarry Smith           s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
521b01c7715SBarry Smith           s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
522b01c7715SBarry Smith           v  += 16;
523b01c7715SBarry Smith         }
524b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
525b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
526b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
527b01c7715SBarry Smith         x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
528b01c7715SBarry Smith         idiag  -= 16;
529b01c7715SBarry Smith         i2     -= 4;
530b01c7715SBarry Smith       }
531dc0b31edSSatish Balay       ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr);
532b01c7715SBarry Smith     }
533f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
5341ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5353649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
536b01c7715SBarry Smith   PetscFunctionReturn(0);
537b01c7715SBarry Smith }
538b01c7715SBarry Smith 
539b01c7715SBarry Smith #undef __FUNCT__
54041f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_5"
54141f059aeSBarry Smith PetscErrorCode MatSOR_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
542b01c7715SBarry Smith {
543b01c7715SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
544b01c7715SBarry Smith   PetscScalar       *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5;
545dd6ea824SBarry Smith   const MatScalar   *v,*aa = a->a, *idiag,*mdiag;
546dd6ea824SBarry Smith   const PetscScalar *b;
547dfbe8321SBarry Smith   PetscErrorCode    ierr;
548c1ac3661SBarry Smith   PetscInt          m = a->mbs,i,i2,nz,idx;
549c1ac3661SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
550b01c7715SBarry Smith 
551b01c7715SBarry Smith   PetscFunctionBegin;
552e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
553b01c7715SBarry Smith   its = its*lits;
554e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
555e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
556e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
557e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
558e32f2f54SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
559b01c7715SBarry Smith 
5600298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
561b01c7715SBarry Smith 
562b01c7715SBarry Smith   diag  = a->diag;
563b01c7715SBarry Smith   idiag = a->idiag;
5641ebc52fbSHong Zhang   ierr  = VecGetArray(xx,&x);CHKERRQ(ierr);
5653649974fSBarry Smith   ierr  = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
566b01c7715SBarry Smith 
567b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
568b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
569b01c7715SBarry Smith       x[0]   = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20];
570b01c7715SBarry Smith       x[1]   = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21];
571b01c7715SBarry Smith       x[2]   = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22];
572b01c7715SBarry Smith       x[3]   = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23];
573b01c7715SBarry Smith       x[4]   = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24];
574b01c7715SBarry Smith       i2     = 5;
575b01c7715SBarry Smith       idiag += 25;
576b01c7715SBarry Smith       for (i=1; i<m; i++) {
577b01c7715SBarry Smith         v  = aa + 25*ai[i];
578b01c7715SBarry Smith         vi = aj + ai[i];
579b01c7715SBarry Smith         nz = diag[i] - ai[i];
580b01c7715SBarry Smith         s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4];
581b01c7715SBarry Smith         while (nz--) {
582b01c7715SBarry Smith           idx = 5*(*vi++);
583b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
584b01c7715SBarry Smith           s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
585b01c7715SBarry Smith           s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
586b01c7715SBarry Smith           s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
587b01c7715SBarry Smith           s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
588b01c7715SBarry Smith           s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
589b01c7715SBarry Smith           v  += 25;
590b01c7715SBarry Smith         }
591b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
592b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
593b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
594b01c7715SBarry Smith         x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
595b01c7715SBarry Smith         x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
596b01c7715SBarry Smith         idiag  += 25;
597b01c7715SBarry Smith         i2     += 5;
598b01c7715SBarry Smith       }
599b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
600dc0b31edSSatish Balay       ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr);
601b01c7715SBarry Smith     }
602b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
603b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
604b01c7715SBarry Smith       i2    = 0;
605b01c7715SBarry Smith       mdiag = a->idiag+25*a->mbs;
606b01c7715SBarry Smith       for (i=0; i<m; i++) {
607b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
608b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5;
609b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5;
610b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5;
611b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5;
612b01c7715SBarry Smith         x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5;
613b01c7715SBarry Smith         mdiag  += 25;
614b01c7715SBarry Smith         i2     += 5;
615b01c7715SBarry Smith       }
616dc0b31edSSatish Balay       ierr = PetscLogFlops(45.0*m);CHKERRQ(ierr);
617b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
618d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
619b01c7715SBarry Smith     }
620b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
621b01c7715SBarry Smith       idiag   = a->idiag+25*a->mbs - 25;
622b01c7715SBarry Smith       i2      = 5*m - 5;
623b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
624b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5;
625b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5;
626b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5;
627b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5;
628b01c7715SBarry Smith       x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5;
629b01c7715SBarry Smith       idiag  -= 25;
630b01c7715SBarry Smith       i2     -= 5;
631b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
632b01c7715SBarry Smith         v  = aa + 25*(diag[i]+1);
633b01c7715SBarry Smith         vi = aj + diag[i] + 1;
634b01c7715SBarry Smith         nz = ai[i+1] - diag[i] - 1;
635b01c7715SBarry Smith         s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4];
636b01c7715SBarry Smith         while (nz--) {
637b01c7715SBarry Smith           idx = 5*(*vi++);
638b01c7715SBarry Smith           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
639b01c7715SBarry Smith           s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
640b01c7715SBarry Smith           s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
641b01c7715SBarry Smith           s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
642b01c7715SBarry Smith           s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
643b01c7715SBarry Smith           s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
644b01c7715SBarry Smith           v  += 25;
645b01c7715SBarry Smith         }
646b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
647b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
648b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
649b01c7715SBarry Smith         x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
650b01c7715SBarry Smith         x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
651b01c7715SBarry Smith         idiag  -= 25;
652b01c7715SBarry Smith         i2     -= 5;
653b01c7715SBarry Smith       }
654dc0b31edSSatish Balay       ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr);
655b01c7715SBarry Smith     }
656f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
6571ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
6583649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
659b01c7715SBarry Smith   PetscFunctionReturn(0);
660b01c7715SBarry Smith }
661b01c7715SBarry Smith 
6626d3beeddSMatthew Knepley #undef __FUNCT__
66341f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_6"
66441f059aeSBarry Smith PetscErrorCode MatSOR_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
6656d3beeddSMatthew Knepley {
6666d3beeddSMatthew Knepley   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
6676d3beeddSMatthew Knepley   PetscScalar       *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6;
668dd6ea824SBarry Smith   const MatScalar   *v,*aa = a->a, *idiag,*mdiag;
669dd6ea824SBarry Smith   const PetscScalar *b;
6706d3beeddSMatthew Knepley   PetscErrorCode    ierr;
6716d3beeddSMatthew Knepley   PetscInt          m = a->mbs,i,i2,nz,idx;
6726d3beeddSMatthew Knepley   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
6736d3beeddSMatthew Knepley 
6746d3beeddSMatthew Knepley   PetscFunctionBegin;
675e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
6766d3beeddSMatthew Knepley   its = its*lits;
677e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
678e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
679e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
680e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
681e32f2f54SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
6826d3beeddSMatthew Knepley 
6830298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
6846d3beeddSMatthew Knepley 
6856d3beeddSMatthew Knepley   diag  = a->diag;
6866d3beeddSMatthew Knepley   idiag = a->idiag;
6876d3beeddSMatthew Knepley   ierr  = VecGetArray(xx,&x);CHKERRQ(ierr);
6883649974fSBarry Smith   ierr  = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
6896d3beeddSMatthew Knepley 
6906d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
6916d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
6926d3beeddSMatthew Knepley       x[0]   = b[0]*idiag[0] + b[1]*idiag[6]  + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30];
6936d3beeddSMatthew Knepley       x[1]   = b[0]*idiag[1] + b[1]*idiag[7]  + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31];
6946d3beeddSMatthew Knepley       x[2]   = b[0]*idiag[2] + b[1]*idiag[8]  + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32];
6956d3beeddSMatthew Knepley       x[3]   = b[0]*idiag[3] + b[1]*idiag[9]  + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33];
6966d3beeddSMatthew Knepley       x[4]   = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34];
6976d3beeddSMatthew Knepley       x[5]   = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35];
6986d3beeddSMatthew Knepley       i2     = 6;
6996d3beeddSMatthew Knepley       idiag += 36;
7006d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
7016d3beeddSMatthew Knepley         v  = aa + 36*ai[i];
7026d3beeddSMatthew Knepley         vi = aj + ai[i];
7036d3beeddSMatthew Knepley         nz = diag[i] - ai[i];
7046d3beeddSMatthew Knepley         s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5];
7056d3beeddSMatthew Knepley         while (nz--) {
7066d3beeddSMatthew Knepley           idx = 6*(*vi++);
7076d3beeddSMatthew Knepley           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7086d3beeddSMatthew Knepley           s1 -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7096d3beeddSMatthew Knepley           s2 -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7106d3beeddSMatthew Knepley           s3 -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7116d3beeddSMatthew Knepley           s4 -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7126d3beeddSMatthew Knepley           s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7136d3beeddSMatthew Knepley           s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7146d3beeddSMatthew Knepley           v  += 36;
7156d3beeddSMatthew Knepley         }
7166d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7176d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7186d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7196d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7206d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7216d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7226d3beeddSMatthew Knepley         idiag  += 36;
7236d3beeddSMatthew Knepley         i2     += 6;
7246d3beeddSMatthew Knepley       }
7256d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
726dc0b31edSSatish Balay       ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr);
7276d3beeddSMatthew Knepley     }
7286d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
7296d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
7306d3beeddSMatthew Knepley       i2    = 0;
7316d3beeddSMatthew Knepley       mdiag = a->idiag+36*a->mbs;
7326d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
7336d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7346d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[6]*x2  + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6;
7356d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2  + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6;
7366d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2  + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6;
7376d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2  + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6;
7386d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6;
7396d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6;
7406d3beeddSMatthew Knepley         mdiag  += 36;
7416d3beeddSMatthew Knepley         i2     += 6;
7426d3beeddSMatthew Knepley       }
743dc0b31edSSatish Balay       ierr = PetscLogFlops(60.0*m);CHKERRQ(ierr);
7446d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
745d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
7466d3beeddSMatthew Knepley     }
7476d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
7486d3beeddSMatthew Knepley       idiag   = a->idiag+36*a->mbs - 36;
7496d3beeddSMatthew Knepley       i2      = 6*m - 6;
7506d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7516d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[6]*x2  + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6;
7526d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[7]*x2  + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6;
7536d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[8]*x2  + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6;
7546d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[9]*x2  + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6;
7556d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6;
7566d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6;
7576d3beeddSMatthew Knepley       idiag  -= 36;
7586d3beeddSMatthew Knepley       i2     -= 6;
7596d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
7606d3beeddSMatthew Knepley         v  = aa + 36*(diag[i]+1);
7616d3beeddSMatthew Knepley         vi = aj + diag[i] + 1;
7626d3beeddSMatthew Knepley         nz = ai[i+1] - diag[i] - 1;
7636d3beeddSMatthew Knepley         s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5];
7646d3beeddSMatthew Knepley         while (nz--) {
7656d3beeddSMatthew Knepley           idx = 6*(*vi++);
7666d3beeddSMatthew Knepley           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7676d3beeddSMatthew Knepley           s1 -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7686d3beeddSMatthew Knepley           s2 -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7696d3beeddSMatthew Knepley           s3 -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7706d3beeddSMatthew Knepley           s4 -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7716d3beeddSMatthew Knepley           s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7726d3beeddSMatthew Knepley           s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7736d3beeddSMatthew Knepley           v  += 36;
7746d3beeddSMatthew Knepley         }
7756d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7766d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7776d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7786d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7796d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7806d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7816d3beeddSMatthew Knepley         idiag  -= 36;
7826d3beeddSMatthew Knepley         i2     -= 6;
7836d3beeddSMatthew Knepley       }
784dc0b31edSSatish Balay       ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr);
7856d3beeddSMatthew Knepley     }
786f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
7876d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
7883649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
7896d3beeddSMatthew Knepley   PetscFunctionReturn(0);
7906d3beeddSMatthew Knepley }
7916d3beeddSMatthew Knepley 
7926d3beeddSMatthew Knepley #undef __FUNCT__
79341f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_7"
79441f059aeSBarry Smith PetscErrorCode MatSOR_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
7956d3beeddSMatthew Knepley {
7966d3beeddSMatthew Knepley   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
7976d3beeddSMatthew Knepley   PetscScalar       *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7;
798dd6ea824SBarry Smith   const MatScalar   *v,*aa = a->a, *idiag,*mdiag;
799dd6ea824SBarry Smith   const PetscScalar *b;
8006d3beeddSMatthew Knepley   PetscErrorCode    ierr;
8016d3beeddSMatthew Knepley   PetscInt          m = a->mbs,i,i2,nz,idx;
8026d3beeddSMatthew Knepley   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
8036d3beeddSMatthew Knepley 
8046d3beeddSMatthew Knepley   PetscFunctionBegin;
805e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
8066d3beeddSMatthew Knepley   its = its*lits;
807e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
808e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
809e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
810e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
811e32f2f54SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
8126d3beeddSMatthew Knepley 
8130298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
8146d3beeddSMatthew Knepley 
8156d3beeddSMatthew Knepley   diag  = a->diag;
8166d3beeddSMatthew Knepley   idiag = a->idiag;
8176d3beeddSMatthew Knepley   ierr  = VecGetArray(xx,&x);CHKERRQ(ierr);
8183649974fSBarry Smith   ierr  = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
8196d3beeddSMatthew Knepley 
8206d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
8216d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
8226d3beeddSMatthew Knepley       x[0]   = b[0]*idiag[0] + b[1]*idiag[7]  + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42];
8236d3beeddSMatthew Knepley       x[1]   = b[0]*idiag[1] + b[1]*idiag[8]  + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43];
8246d3beeddSMatthew Knepley       x[2]   = b[0]*idiag[2] + b[1]*idiag[9]  + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44];
8256d3beeddSMatthew Knepley       x[3]   = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45];
8266d3beeddSMatthew Knepley       x[4]   = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46];
8276d3beeddSMatthew Knepley       x[5]   = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47];
8286d3beeddSMatthew Knepley       x[6]   = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48];
8296d3beeddSMatthew Knepley       i2     = 7;
8306d3beeddSMatthew Knepley       idiag += 49;
8316d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
8326d3beeddSMatthew Knepley         v  = aa + 49*ai[i];
8336d3beeddSMatthew Knepley         vi = aj + ai[i];
8346d3beeddSMatthew Knepley         nz = diag[i] - ai[i];
8356d3beeddSMatthew Knepley         s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6];
8366d3beeddSMatthew Knepley         while (nz--) {
8376d3beeddSMatthew Knepley           idx = 7*(*vi++);
8386d3beeddSMatthew Knepley           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
8396d3beeddSMatthew Knepley           s1 -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
8406d3beeddSMatthew Knepley           s2 -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
8416d3beeddSMatthew Knepley           s3 -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
8426d3beeddSMatthew Knepley           s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
8436d3beeddSMatthew Knepley           s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
8446d3beeddSMatthew Knepley           s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
8456d3beeddSMatthew Knepley           s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
8466d3beeddSMatthew Knepley           v  += 49;
8476d3beeddSMatthew Knepley         }
8486d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
8496d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
8506d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
8516d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
8526d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
8536d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
8546d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
8556d3beeddSMatthew Knepley         idiag  += 49;
8566d3beeddSMatthew Knepley         i2     += 7;
8576d3beeddSMatthew Knepley       }
8586d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
859dc0b31edSSatish Balay       ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr);
8606d3beeddSMatthew Knepley     }
8616d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
8626d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
8636d3beeddSMatthew Knepley       i2    = 0;
8646d3beeddSMatthew Knepley       mdiag = a->idiag+49*a->mbs;
8656d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
8666d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
867de80f912SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[7]*x2  + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[42]*x7;
868de80f912SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2  + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[43]*x7;
869de80f912SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2  + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[44]*x7;
870de80f912SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[45]*x7;
871de80f912SBarry Smith         x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[46]*x7;
872de80f912SBarry Smith         x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[47]*x7;
873de80f912SBarry Smith         x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[48]*x7;
874de80f912SBarry Smith         mdiag  += 49;
875de80f912SBarry Smith         i2     += 7;
8766d3beeddSMatthew Knepley       }
877dc0b31edSSatish Balay       ierr = PetscLogFlops(93.0*m);CHKERRQ(ierr);
8786d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
879d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
8806d3beeddSMatthew Knepley     }
8816d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
8826d3beeddSMatthew Knepley       idiag   = a->idiag+49*a->mbs - 49;
8836d3beeddSMatthew Knepley       i2      = 7*m - 7;
8846d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8856d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[7]*x2  + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7;
8866d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[8]*x2  + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7;
8876d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[9]*x2  + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7;
8886d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7;
8896d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7;
8906d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7;
8916d3beeddSMatthew Knepley       x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7;
8926d3beeddSMatthew Knepley       idiag  -= 49;
8936d3beeddSMatthew Knepley       i2     -= 7;
8946d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
8956d3beeddSMatthew Knepley         v  = aa + 49*(diag[i]+1);
8966d3beeddSMatthew Knepley         vi = aj + diag[i] + 1;
8976d3beeddSMatthew Knepley         nz = ai[i+1] - diag[i] - 1;
8986d3beeddSMatthew Knepley         s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6];
8996d3beeddSMatthew Knepley         while (nz--) {
9006d3beeddSMatthew Knepley           idx = 7*(*vi++);
9016d3beeddSMatthew Knepley           x1  = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
9026d3beeddSMatthew Knepley           s1 -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
9036d3beeddSMatthew Knepley           s2 -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
9046d3beeddSMatthew Knepley           s3 -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
9056d3beeddSMatthew Knepley           s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
9066d3beeddSMatthew Knepley           s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
9076d3beeddSMatthew Knepley           s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
9086d3beeddSMatthew Knepley           s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
9096d3beeddSMatthew Knepley           v  += 49;
9106d3beeddSMatthew Knepley         }
9116d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
9126d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
9136d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
9146d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
9156d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
9166d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
9176d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
9186d3beeddSMatthew Knepley         idiag  -= 49;
9196d3beeddSMatthew Knepley         i2     -= 7;
9206d3beeddSMatthew Knepley       }
921dc0b31edSSatish Balay       ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr);
9226d3beeddSMatthew Knepley     }
923f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
9246d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
9253649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
9266d3beeddSMatthew Knepley   PetscFunctionReturn(0);
9276d3beeddSMatthew Knepley }
9286d3beeddSMatthew Knepley 
929de80f912SBarry Smith #undef __FUNCT__
930de80f912SBarry Smith #define __FUNCT__ "MatSOR_SeqBAIJ_N"
931de80f912SBarry Smith PetscErrorCode MatSOR_SeqBAIJ_N(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
932de80f912SBarry Smith {
933de80f912SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
934de80f912SBarry Smith   PetscScalar       *x,*work,*w,*workt;
935de80f912SBarry Smith   const MatScalar   *v,*aa = a->a, *idiag,*mdiag;
936de80f912SBarry Smith   const PetscScalar *b;
937de80f912SBarry Smith   PetscErrorCode    ierr;
938de80f912SBarry Smith   PetscInt          m = a->mbs,i,i2,nz,bs = A->rmap->bs,bs2 = bs*bs,k,j;
939de80f912SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
940de80f912SBarry Smith 
941de80f912SBarry Smith   PetscFunctionBegin;
942de80f912SBarry Smith   its = its*lits;
943de80f912SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
944de80f912SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
945de80f912SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
946de80f912SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
947de80f912SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
948de80f912SBarry Smith   if (its > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
949de80f912SBarry Smith 
9500298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
951de80f912SBarry Smith 
952de80f912SBarry Smith   diag  = a->diag;
953de80f912SBarry Smith   idiag = a->idiag;
954de80f912SBarry Smith   if (!a->mult_work) {
955de80f912SBarry Smith     k    = PetscMax(A->rmap->n,A->cmap->n);
956de80f912SBarry Smith     ierr = PetscMalloc((k+1)*sizeof(PetscScalar),&a->mult_work);CHKERRQ(ierr);
957de80f912SBarry Smith   }
958de80f912SBarry Smith   work = a->mult_work;
959de80f912SBarry Smith   if (!a->sor_work) {
960de80f912SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscScalar),&a->sor_work);CHKERRQ(ierr);
961de80f912SBarry Smith   }
962de80f912SBarry Smith   w = a->sor_work;
963de80f912SBarry Smith 
964de80f912SBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
965de80f912SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
966de80f912SBarry Smith 
967de80f912SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
968de80f912SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
96996b95a6bSBarry Smith       PetscKernel_w_gets_Ar_times_v(bs,bs,b,idiag,x);
970de80f912SBarry Smith       /*x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6];
971de80f912SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7];
972de80f912SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8];*/
973de80f912SBarry Smith       i2     = bs;
974de80f912SBarry Smith       idiag += bs2;
975de80f912SBarry Smith       for (i=1; i<m; i++) {
976de80f912SBarry Smith         v  = aa + bs2*ai[i];
977de80f912SBarry Smith         vi = aj + ai[i];
978de80f912SBarry Smith         nz = diag[i] - ai[i];
979de80f912SBarry Smith 
980de80f912SBarry Smith         ierr = PetscMemcpy(w,b+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
981de80f912SBarry Smith         /* copy all rows of x that are needed into contiguous space */
982de80f912SBarry Smith         workt = work;
983de80f912SBarry Smith         for (j=0; j<nz; j++) {
984de80f912SBarry Smith           ierr   = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr);
985de80f912SBarry Smith           workt += bs;
986de80f912SBarry Smith         }
98796b95a6bSBarry Smith         PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
988de80f912SBarry Smith         /*s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2];
989de80f912SBarry Smith          while (nz--) {
990de80f912SBarry Smith            idx  = N*(*vi++);
991de80f912SBarry Smith            x1   = x[idx]; x2 = x[1+idx];x3 = x[2+idx];
992de80f912SBarry Smith            s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
993de80f912SBarry Smith            s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
994de80f912SBarry Smith            s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
995de80f912SBarry Smith            v   += N2;
996de80f912SBarry Smith            } */
997de80f912SBarry Smith 
99896b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
999de80f912SBarry Smith         /*  x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
1000de80f912SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
1001de80f912SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;*/
1002de80f912SBarry Smith 
1003de80f912SBarry Smith         idiag += bs2;
1004de80f912SBarry Smith         i2    += bs;
1005de80f912SBarry Smith       }
1006de80f912SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
1007de80f912SBarry Smith       ierr = PetscLogFlops(1.0*bs2*(a->nz));CHKERRQ(ierr);
1008de80f912SBarry Smith     }
1009de80f912SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
1010de80f912SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1011de80f912SBarry Smith       i2    = 0;
1012de80f912SBarry Smith       mdiag = a->idiag+bs2*a->mbs;
1013de80f912SBarry Smith       ierr  = PetscMemcpy(work,x,m*bs*sizeof(PetscScalar));CHKERRQ(ierr);
1014de80f912SBarry Smith       for (i=0; i<m; i++) {
101596b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,work+i2,mdiag,x+i2);
1016de80f912SBarry Smith         /* x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
1017de80f912SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3;
1018de80f912SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3;
1019de80f912SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3; */
1020de80f912SBarry Smith 
1021de80f912SBarry Smith         mdiag += bs2;
1022de80f912SBarry Smith         i2    += bs;
1023de80f912SBarry Smith       }
1024de80f912SBarry Smith       ierr = PetscLogFlops(2.0*bs*(bs-1)*m);CHKERRQ(ierr);
1025de80f912SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1026de80f912SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
1027de80f912SBarry Smith     }
1028de80f912SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1029de80f912SBarry Smith       idiag = a->idiag+bs2*a->mbs - bs2;
1030de80f912SBarry Smith       i2    = bs*m - bs;
1031de80f912SBarry Smith       ierr  = PetscMemcpy(w,x+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
103296b95a6bSBarry Smith       PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
1033de80f912SBarry Smith       /*x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
1034de80f912SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3;
1035de80f912SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3;
1036de80f912SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3;*/
1037de80f912SBarry Smith       idiag -= bs2;
1038de80f912SBarry Smith       i2    -= bs;
1039de80f912SBarry Smith       for (i=m-2; i>=0; i--) {
1040de80f912SBarry Smith         v  = aa + bs2*(diag[i]+1);
1041de80f912SBarry Smith         vi = aj + diag[i] + 1;
1042de80f912SBarry Smith         nz = ai[i+1] - diag[i] - 1;
1043de80f912SBarry Smith 
1044de80f912SBarry Smith         ierr = PetscMemcpy(w,x+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
1045de80f912SBarry Smith         /* copy all rows of x that are needed into contiguous space */
1046de80f912SBarry Smith         workt = work;
1047de80f912SBarry Smith         for (j=0; j<nz; j++) {
1048de80f912SBarry Smith           ierr   = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr);
1049de80f912SBarry Smith           workt += bs;
1050de80f912SBarry Smith         }
105196b95a6bSBarry Smith         PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
1052de80f912SBarry Smith         /* s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2];
1053de80f912SBarry Smith         while (nz--) {
1054de80f912SBarry Smith           idx  = N*(*vi++);
1055de80f912SBarry Smith           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx];
1056de80f912SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
1057de80f912SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
1058de80f912SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
1059de80f912SBarry Smith           v   += N2;
1060de80f912SBarry Smith           } */
1061de80f912SBarry Smith 
106296b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
1063de80f912SBarry Smith         /*x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
1064de80f912SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
1065de80f912SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; */
1066de80f912SBarry Smith         idiag -= bs2;
1067de80f912SBarry Smith         i2    -= bs;
1068de80f912SBarry Smith       }
1069de80f912SBarry Smith       ierr = PetscLogFlops(1.0*bs2*(a->nz));CHKERRQ(ierr);
1070de80f912SBarry Smith     }
1071f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
1072de80f912SBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1073de80f912SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
1074de80f912SBarry Smith   PetscFunctionReturn(0);
1075de80f912SBarry Smith }
1076de80f912SBarry Smith 
1077af674e45SBarry Smith /*
107881824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
1079af674e45SBarry Smith */
1080af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1081af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
1082af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1083af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
1084af674e45SBarry Smith #endif
1085af674e45SBarry Smith 
10869c8c1041SBarry Smith EXTERN_C_BEGIN
1087af674e45SBarry Smith #undef __FUNCT__
1088af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_"
10897087cfbeSBarry Smith void  matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
1090af674e45SBarry Smith {
1091af674e45SBarry Smith   Mat               A  = *AA;
1092af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1093c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
1094c1ac3661SBarry Smith   PetscInt          *ai    =a->i,*ailen=a->ilen;
109517ec6a02SBarry Smith   PetscInt          *aj    =a->j,stepval,lastcol = -1;
1096f15d580aSBarry Smith   const PetscScalar *value = v;
10974bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
1098af674e45SBarry Smith 
1099af674e45SBarry Smith   PetscFunctionBegin;
1100ce94432eSBarry Smith   if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
1101af674e45SBarry Smith   stepval = (n-1)*4;
1102af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1103af674e45SBarry Smith     row  = im[k];
1104af674e45SBarry Smith     rp   = aj + ai[row];
1105af674e45SBarry Smith     ap   = aa + 16*ai[row];
1106af674e45SBarry Smith     nrow = ailen[row];
1107af674e45SBarry Smith     low  = 0;
110817ec6a02SBarry Smith     high = nrow;
1109af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1110af674e45SBarry Smith       col = in[l];
1111db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
1112db4deed7SKarl Rupp       else                high = nrow;
111317ec6a02SBarry Smith       lastcol = col;
11141e3347e8SBarry Smith       value   = v + k*(stepval+4 + l)*4;
1115af674e45SBarry Smith       while (high-low > 7) {
1116af674e45SBarry Smith         t = (low+high)/2;
1117af674e45SBarry Smith         if (rp[t] > col) high = t;
1118af674e45SBarry Smith         else             low  = t;
1119af674e45SBarry Smith       }
1120af674e45SBarry Smith       for (i=low; i<high; i++) {
1121af674e45SBarry Smith         if (rp[i] > col) break;
1122af674e45SBarry Smith         if (rp[i] == col) {
1123af674e45SBarry Smith           bap = ap +  16*i;
1124af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
1125af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
1126af674e45SBarry Smith               bap[jj] += *value++;
1127af674e45SBarry Smith             }
1128af674e45SBarry Smith           }
1129af674e45SBarry Smith           goto noinsert2;
1130af674e45SBarry Smith         }
1131af674e45SBarry Smith       }
1132af674e45SBarry Smith       N = nrow++ - 1;
113317ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
1134af674e45SBarry Smith       /* shift up all the later entries in this row */
1135af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1136af674e45SBarry Smith         rp[ii+1] = rp[ii];
1137a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1138af674e45SBarry Smith       }
1139af674e45SBarry Smith       if (N >= i) {
1140a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1141af674e45SBarry Smith       }
1142af674e45SBarry Smith       rp[i] = col;
1143af674e45SBarry Smith       bap   = ap +  16*i;
1144af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
1145af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
1146af674e45SBarry Smith           bap[jj] = *value++;
1147af674e45SBarry Smith         }
1148af674e45SBarry Smith       }
1149af674e45SBarry Smith       noinsert2:;
1150af674e45SBarry Smith       low = i;
1151af674e45SBarry Smith     }
1152af674e45SBarry Smith     ailen[row] = nrow;
1153af674e45SBarry Smith   }
1154be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1155af674e45SBarry Smith }
11569c8c1041SBarry Smith EXTERN_C_END
1157af674e45SBarry Smith 
1158af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1159af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
1160af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1161af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
1162af674e45SBarry Smith #endif
1163af674e45SBarry Smith 
11649c8c1041SBarry Smith EXTERN_C_BEGIN
1165af674e45SBarry Smith #undef __FUNCT__
1166af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_"
11677087cfbeSBarry Smith void  matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
1168af674e45SBarry Smith {
1169af674e45SBarry Smith   Mat         A  = *AA;
1170af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1171c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm;
1172c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
1173c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
117417ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
1175af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
1176af674e45SBarry Smith 
1177af674e45SBarry Smith   PetscFunctionBegin;
1178af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1179af674e45SBarry Smith     row  = im[k]; brow = row/4;
1180af674e45SBarry Smith     rp   = aj + ai[brow];
1181af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1182af674e45SBarry Smith     nrow = ailen[brow];
1183af674e45SBarry Smith     low  = 0;
118417ec6a02SBarry Smith     high = nrow;
1185af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1186af674e45SBarry Smith       col   = in[l]; bcol = col/4;
1187af674e45SBarry Smith       ridx  = row % 4; cidx = col % 4;
1188af674e45SBarry Smith       value = v[l + k*n];
1189db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
1190db4deed7SKarl Rupp       else                high = nrow;
119117ec6a02SBarry Smith       lastcol = col;
1192af674e45SBarry Smith       while (high-low > 7) {
1193af674e45SBarry Smith         t = (low+high)/2;
1194af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1195af674e45SBarry Smith         else              low  = t;
1196af674e45SBarry Smith       }
1197af674e45SBarry Smith       for (i=low; i<high; i++) {
1198af674e45SBarry Smith         if (rp[i] > bcol) break;
1199af674e45SBarry Smith         if (rp[i] == bcol) {
1200af674e45SBarry Smith           bap   = ap +  16*i + 4*cidx + ridx;
1201af674e45SBarry Smith           *bap += value;
1202af674e45SBarry Smith           goto noinsert1;
1203af674e45SBarry Smith         }
1204af674e45SBarry Smith       }
1205af674e45SBarry Smith       N = nrow++ - 1;
120617ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1207af674e45SBarry Smith       /* shift up all the later entries in this row */
1208af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1209af674e45SBarry Smith         rp[ii+1] = rp[ii];
1210a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1211af674e45SBarry Smith       }
1212af674e45SBarry Smith       if (N>=i) {
1213a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1214af674e45SBarry Smith       }
1215af674e45SBarry Smith       rp[i]                    = bcol;
1216af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1217af674e45SBarry Smith noinsert1:;
1218af674e45SBarry Smith       low = i;
1219af674e45SBarry Smith     }
1220af674e45SBarry Smith     ailen[brow] = nrow;
1221af674e45SBarry Smith   }
1222be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1223af674e45SBarry Smith }
12249c8c1041SBarry Smith EXTERN_C_END
1225af674e45SBarry Smith 
1226be5855fcSBarry Smith /*
1227be5855fcSBarry Smith      Checks for missing diagonals
1228be5855fcSBarry Smith */
12294a2ae208SSatish Balay #undef __FUNCT__
12304a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ"
1231ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
1232be5855fcSBarry Smith {
1233be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
12346849ba73SBarry Smith   PetscErrorCode ierr;
1235c1ac3661SBarry Smith   PetscInt       *diag,*jj = a->j,i;
1236be5855fcSBarry Smith 
1237be5855fcSBarry Smith   PetscFunctionBegin;
1238c4992f7dSBarry Smith   ierr     = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
12392af78befSBarry Smith   *missing = PETSC_FALSE;
12402efa7f71SHong Zhang   if (A->rmap->n > 0 && !jj) {
12412efa7f71SHong Zhang     *missing = PETSC_TRUE;
12422efa7f71SHong Zhang     if (d) *d = 0;
1243358d2f5dSShri Abhyankar     PetscInfo(A,"Matrix has no entries therefore is missing diagonal");
12442efa7f71SHong Zhang   } else {
1245883fce79SBarry Smith     diag = a->diag;
12460e8e8aceSBarry Smith     for (i=0; i<a->mbs; i++) {
1247be5855fcSBarry Smith       if (jj[diag[i]] != i) {
12482af78befSBarry Smith         *missing = PETSC_TRUE;
12492af78befSBarry Smith         if (d) *d = i;
12502efa7f71SHong Zhang         PetscInfo1(A,"Matrix is missing block diagonal number %D",i);
1251358d2f5dSShri Abhyankar         break;
12522efa7f71SHong Zhang       }
1253be5855fcSBarry Smith     }
1254be5855fcSBarry Smith   }
1255be5855fcSBarry Smith   PetscFunctionReturn(0);
1256be5855fcSBarry Smith }
1257be5855fcSBarry Smith 
12584a2ae208SSatish Balay #undef __FUNCT__
12594a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ"
1260dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1261de6a44a3SBarry Smith {
1262de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
12636849ba73SBarry Smith   PetscErrorCode ierr;
126409f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1265de6a44a3SBarry Smith 
12663a40ed3dSBarry Smith   PetscFunctionBegin;
126709f38230SBarry Smith   if (!a->diag) {
126809f38230SBarry Smith     ierr         = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
12694fd072dbSBarry Smith     ierr         = PetscLogObjectMemory(A,m*sizeof(PetscInt));CHKERRQ(ierr);
12704fd072dbSBarry Smith     a->free_diag = PETSC_TRUE;
127109f38230SBarry Smith   }
12727fc0212eSBarry Smith   for (i=0; i<m; i++) {
127309f38230SBarry Smith     a->diag[i] = a->i[i+1];
1274de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1275de6a44a3SBarry Smith       if (a->j[j] == i) {
127609f38230SBarry Smith         a->diag[i] = j;
1277de6a44a3SBarry Smith         break;
1278de6a44a3SBarry Smith       }
1279de6a44a3SBarry Smith     }
1280de6a44a3SBarry Smith   }
12813a40ed3dSBarry Smith   PetscFunctionReturn(0);
1282de6a44a3SBarry Smith }
12832593348eSBarry Smith 
12842593348eSBarry Smith 
12854a2ae208SSatish Balay #undef __FUNCT__
12864a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ"
12871a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool  *done)
12883b2fbd54SBarry Smith {
12893b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1290dfbe8321SBarry Smith   PetscErrorCode ierr;
12911a83f524SJed Brown   PetscInt       i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt;
12921a83f524SJed Brown   PetscInt       **ia = (PetscInt**)inia,**ja = (PetscInt**)inja;
12933b2fbd54SBarry Smith 
12943a40ed3dSBarry Smith   PetscFunctionBegin;
12953b2fbd54SBarry Smith   *nn = n;
12963a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
12973b2fbd54SBarry Smith   if (symmetric) {
12988f7157efSSatish Balay     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr);
1299553b3c51SBarry Smith     nz   = tia[n];
13003b2fbd54SBarry Smith   } else {
13018f7157efSSatish Balay     tia = a->i; tja = a->j;
13023b2fbd54SBarry Smith   }
13033b2fbd54SBarry Smith 
1304ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1305ecc77c7aSBarry Smith     (*nn) *= bs;
13068f7157efSSatish Balay     /* malloc & create the natural set of indices */
1307ecc77c7aSBarry Smith     ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr);
13089985e31cSBarry Smith     if (n) {
1309ecc77c7aSBarry Smith       (*ia)[0] = 0;
1310ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1311ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1312ecc77c7aSBarry Smith       }
13139985e31cSBarry Smith     }
1314ecc77c7aSBarry Smith 
1315ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1316ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1317ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1318ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
13198f7157efSSatish Balay       }
13208f7157efSSatish Balay     }
13219985e31cSBarry Smith     if (n) {
1322ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
13239985e31cSBarry Smith     }
1324ecc77c7aSBarry Smith 
13251a83f524SJed Brown     if (inja) {
13269985e31cSBarry Smith       ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr);
13279985e31cSBarry Smith       cnt = 0;
13289985e31cSBarry Smith       for (i=0; i<n; i++) {
13299985e31cSBarry Smith         for (j=0; j<bs; j++) {
13309985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
13319985e31cSBarry Smith             for (l=0; l<bs; l++) {
13329985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
13339985e31cSBarry Smith             }
13349985e31cSBarry Smith           }
13359985e31cSBarry Smith         }
13369985e31cSBarry Smith       }
13379985e31cSBarry Smith     }
13389985e31cSBarry Smith 
13398f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
13408f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
13418f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
13428f7157efSSatish Balay     }
1343f6d58c54SBarry Smith   } else if (oshift == 1) {
1344715a17b5SBarry Smith     if (symmetric) {
1345a2ea699eSBarry Smith       nz = tia[A->rmap->n/bs];
1346715a17b5SBarry Smith       /*  add 1 to i and j indices */
1347715a17b5SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1;
1348715a17b5SBarry Smith       *ia = tia;
1349715a17b5SBarry Smith       if (ja) {
1350715a17b5SBarry Smith         for (i=0; i<nz; i++) tja[i] = tja[i] + 1;
1351715a17b5SBarry Smith         *ja = tja;
1352715a17b5SBarry Smith       }
1353715a17b5SBarry Smith     } else {
1354a2ea699eSBarry Smith       nz = a->i[A->rmap->n/bs];
1355f6d58c54SBarry Smith       /* malloc space and  add 1 to i and j indices */
1356f6d58c54SBarry Smith       ierr = PetscMalloc((A->rmap->n/bs+1)*sizeof(PetscInt),ia);CHKERRQ(ierr);
1357f6d58c54SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1;
1358f6d58c54SBarry Smith       if (ja) {
1359f6d58c54SBarry Smith         ierr = PetscMalloc(nz*sizeof(PetscInt),ja);CHKERRQ(ierr);
1360f6d58c54SBarry Smith         for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1;
1361f6d58c54SBarry Smith       }
1362715a17b5SBarry Smith     }
13638f7157efSSatish Balay   } else {
13648f7157efSSatish Balay     *ia = tia;
1365ecc77c7aSBarry Smith     if (ja) *ja = tja;
13668f7157efSSatish Balay   }
13673a40ed3dSBarry Smith   PetscFunctionReturn(0);
13683b2fbd54SBarry Smith }
13693b2fbd54SBarry Smith 
13704a2ae208SSatish Balay #undef __FUNCT__
13714a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ"
13721a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
13733b2fbd54SBarry Smith {
13746849ba73SBarry Smith   PetscErrorCode ierr;
13753b2fbd54SBarry Smith 
13763a40ed3dSBarry Smith   PetscFunctionBegin;
13773a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1378715a17b5SBarry Smith   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
1379606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
13809985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
13813b2fbd54SBarry Smith   }
13823a40ed3dSBarry Smith   PetscFunctionReturn(0);
13833b2fbd54SBarry Smith }
13843b2fbd54SBarry Smith 
13854a2ae208SSatish Balay #undef __FUNCT__
13864a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ"
1387dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
13882d61bbb3SSatish Balay {
13892d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1390dfbe8321SBarry Smith   PetscErrorCode ierr;
13912d61bbb3SSatish Balay 
1392433994e6SBarry Smith   PetscFunctionBegin;
1393aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1394d0f46423SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz);
13952d61bbb3SSatish Balay #endif
1396e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
13976bf464f9SBarry Smith   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
13986bf464f9SBarry Smith   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
13994fd072dbSBarry Smith   if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);}
140005b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
14014fd072dbSBarry Smith   if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);}
140205b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
140305b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1404de80f912SBarry Smith   ierr = PetscFree(a->sor_work);CHKERRQ(ierr);
14056bf464f9SBarry Smith   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
140605b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
140705b42c5fSBarry Smith   ierr = PetscFree(a->xtoy);CHKERRQ(ierr);
1408cd6b891eSBarry Smith   ierr = PetscFree2(a->compressedrow.i,a->compressedrow.rindex);CHKERRQ(ierr);
1409c4319e64SHong Zhang 
14106bf464f9SBarry Smith   ierr = MatDestroy(&a->sbaijMat);CHKERRQ(ierr);
14116bf464f9SBarry Smith   ierr = MatDestroy(&a->parent);CHKERRQ(ierr);
1412bf0cc555SLisandro Dalcin   ierr = PetscFree(A->data);CHKERRQ(ierr);
1413901853e0SKris Buschelman 
1414dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
14150298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatInvertBlockDiagonal_C","",NULL);CHKERRQ(ierr);
14160298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",NULL);CHKERRQ(ierr);
14170298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",NULL);CHKERRQ(ierr);
14180298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",NULL);CHKERRQ(ierr);
14190298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",NULL);CHKERRQ(ierr);
14200298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",NULL);CHKERRQ(ierr);
14210298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",NULL);CHKERRQ(ierr);
14220298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",NULL);CHKERRQ(ierr);
14230298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqbstrm_C","",NULL);CHKERRQ(ierr);
14240298fd71SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatIsTranspose_C","",NULL);CHKERRQ(ierr);
14252d61bbb3SSatish Balay   PetscFunctionReturn(0);
14262d61bbb3SSatish Balay }
14272d61bbb3SSatish Balay 
14284a2ae208SSatish Balay #undef __FUNCT__
14294a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ"
1430ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscBool flg)
14312d61bbb3SSatish Balay {
14322d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
143363ba0a88SBarry Smith   PetscErrorCode ierr;
14342d61bbb3SSatish Balay 
14352d61bbb3SSatish Balay   PetscFunctionBegin;
1436aa275fccSKris Buschelman   switch (op) {
1437aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
14384e0d8c25SBarry Smith     a->roworiented = flg;
1439aa275fccSKris Buschelman     break;
1440a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1441a9817697SBarry Smith     a->keepnonzeropattern = flg;
1442aa275fccSKris Buschelman     break;
1443512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1444512a5fc5SBarry Smith     a->nonew = (flg ? 0 : 1);
1445aa275fccSKris Buschelman     break;
1446aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14474e0d8c25SBarry Smith     a->nonew = (flg ? -1 : 0);
1448aa275fccSKris Buschelman     break;
1449aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
14504e0d8c25SBarry Smith     a->nonew = (flg ? -2 : 0);
1451aa275fccSKris Buschelman     break;
145228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
145328b2fa4aSMatthew Knepley     a->nounused = (flg ? -1 : 0);
145428b2fa4aSMatthew Knepley     break;
1455cd6b891eSBarry Smith   case MAT_CHECK_COMPRESSED_ROW:
1456cd6b891eSBarry Smith     a->compressedrow.check = flg;
1457cd6b891eSBarry Smith     break;
14584e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1459aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1460aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1461290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1462aa275fccSKris Buschelman     break;
14635021d80fSJed Brown   case MAT_SPD:
146477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
146577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14669a4540c5SBarry Smith   case MAT_HERMITIAN:
14679a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14685021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
146977e54ba9SKris Buschelman     break;
1470aa275fccSKris Buschelman   default:
1471e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
14722d61bbb3SSatish Balay   }
14732d61bbb3SSatish Balay   PetscFunctionReturn(0);
14742d61bbb3SSatish Balay }
14752d61bbb3SSatish Balay 
14764a2ae208SSatish Balay #undef __FUNCT__
14774a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ"
1478c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
14792d61bbb3SSatish Balay {
14802d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14816849ba73SBarry Smith   PetscErrorCode ierr;
1482c1ac3661SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
14833f1db9ecSBarry Smith   MatScalar      *aa,*aa_i;
148487828ca2SBarry Smith   PetscScalar    *v_i;
14852d61bbb3SSatish Balay 
14862d61bbb3SSatish Balay   PetscFunctionBegin;
1487d0f46423SBarry Smith   bs  = A->rmap->bs;
14882d61bbb3SSatish Balay   ai  = a->i;
14892d61bbb3SSatish Balay   aj  = a->j;
14902d61bbb3SSatish Balay   aa  = a->a;
14912d61bbb3SSatish Balay   bs2 = a->bs2;
14922d61bbb3SSatish Balay 
1493e32f2f54SBarry Smith   if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
14942d61bbb3SSatish Balay 
14952d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
14962d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
14972d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
14982d61bbb3SSatish Balay   *nz = bs*M;
14992d61bbb3SSatish Balay 
15002d61bbb3SSatish Balay   if (v) {
15012d61bbb3SSatish Balay     *v = 0;
15022d61bbb3SSatish Balay     if (*nz) {
150387828ca2SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr);
15042d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
15052d61bbb3SSatish Balay         v_i  = *v + i*bs;
15062d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
150726fbe8dcSKarl Rupp         for (j=bp,k=0; j<bs2; j+=bs,k++) v_i[k] = aa_i[j];
15082d61bbb3SSatish Balay       }
15092d61bbb3SSatish Balay     }
15102d61bbb3SSatish Balay   }
15112d61bbb3SSatish Balay 
15122d61bbb3SSatish Balay   if (idx) {
15132d61bbb3SSatish Balay     *idx = 0;
15142d61bbb3SSatish Balay     if (*nz) {
1515c1ac3661SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr);
15162d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
15172d61bbb3SSatish Balay         idx_i = *idx + i*bs;
15182d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
151926fbe8dcSKarl Rupp         for (j=0; j<bs; j++) idx_i[j] = itmp++;
15202d61bbb3SSatish Balay       }
15212d61bbb3SSatish Balay     }
15222d61bbb3SSatish Balay   }
15232d61bbb3SSatish Balay   PetscFunctionReturn(0);
15242d61bbb3SSatish Balay }
15252d61bbb3SSatish Balay 
15264a2ae208SSatish Balay #undef __FUNCT__
15274a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ"
1528c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
15292d61bbb3SSatish Balay {
1530dfbe8321SBarry Smith   PetscErrorCode ierr;
1531606d414cSSatish Balay 
15322d61bbb3SSatish Balay   PetscFunctionBegin;
153305b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
153405b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
15352d61bbb3SSatish Balay   PetscFunctionReturn(0);
15362d61bbb3SSatish Balay }
15372d61bbb3SSatish Balay 
1538fca92195SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1539fca92195SBarry Smith 
15404a2ae208SSatish Balay #undef __FUNCT__
15414a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ"
1542fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
15432d61bbb3SSatish Balay {
15442d61bbb3SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data;
15452d61bbb3SSatish Balay   Mat            C;
15466849ba73SBarry Smith   PetscErrorCode ierr;
1547d0f46423SBarry Smith   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
1548c1ac3661SBarry Smith   PetscInt       *rows,*cols,bs2=a->bs2;
1549dd6ea824SBarry Smith   MatScalar      *array;
15502d61bbb3SSatish Balay 
15512d61bbb3SSatish Balay   PetscFunctionBegin;
1552e32f2f54SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1553fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *B) {
1554c1ac3661SBarry Smith     ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr);
1555c1ac3661SBarry Smith     ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr);
15562d61bbb3SSatish Balay 
15572d61bbb3SSatish Balay     for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1;
1558ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr);
1559d0f46423SBarry Smith     ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr);
15607adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
1561ecd8bba6SJed Brown     ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,0,col);CHKERRQ(ierr);
1562606d414cSSatish Balay     ierr = PetscFree(col);CHKERRQ(ierr);
1563fc4dec0aSBarry Smith   } else {
1564fc4dec0aSBarry Smith     C = *B;
1565fc4dec0aSBarry Smith   }
1566fc4dec0aSBarry Smith 
1567fc4dec0aSBarry Smith   array = a->a;
1568fca92195SBarry Smith   ierr  = PetscMalloc2(bs,PetscInt,&rows,bs,PetscInt,&cols);CHKERRQ(ierr);
15692d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
15702d61bbb3SSatish Balay     cols[0] = i*bs;
15712d61bbb3SSatish Balay     for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1;
15722d61bbb3SSatish Balay     len = ai[i+1] - ai[i];
15732d61bbb3SSatish Balay     for (j=0; j<len; j++) {
15742d61bbb3SSatish Balay       rows[0] = (*aj++)*bs;
15752d61bbb3SSatish Balay       for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1;
1576fca92195SBarry Smith       ierr   = MatSetValues_SeqBAIJ(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr);
15772d61bbb3SSatish Balay       array += bs2;
15782d61bbb3SSatish Balay     }
15792d61bbb3SSatish Balay   }
1580fca92195SBarry Smith   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
15812d61bbb3SSatish Balay 
15822d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15832d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15842d61bbb3SSatish Balay 
1585815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
15862d61bbb3SSatish Balay     *B = C;
15872d61bbb3SSatish Balay   } else {
1588eb6b5d47SBarry Smith     ierr = MatHeaderMerge(A,C);CHKERRQ(ierr);
15892d61bbb3SSatish Balay   }
15902d61bbb3SSatish Balay   PetscFunctionReturn(0);
15912d61bbb3SSatish Balay }
15922d61bbb3SSatish Balay 
1593453d3561SHong Zhang EXTERN_C_BEGIN
1594453d3561SHong Zhang #undef __FUNCT__
1595453d3561SHong Zhang #define __FUNCT__ "MatIsTranspose_SeqBAIJ"
1596453d3561SHong Zhang PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A,Mat B,PetscReal tol,PetscBool  *f)
1597453d3561SHong Zhang {
1598453d3561SHong Zhang   PetscErrorCode ierr;
1599453d3561SHong Zhang   Mat            Btrans;
1600453d3561SHong Zhang 
1601453d3561SHong Zhang   PetscFunctionBegin;
1602453d3561SHong Zhang   *f   = PETSC_FALSE;
1603453d3561SHong Zhang   ierr = MatTranspose_SeqBAIJ(A,MAT_INITIAL_MATRIX,&Btrans);CHKERRQ(ierr);
1604453d3561SHong Zhang   ierr = MatEqual_SeqBAIJ(B,Btrans,f);CHKERRQ(ierr);
1605453d3561SHong Zhang   ierr = MatDestroy(&Btrans);CHKERRQ(ierr);
1606453d3561SHong Zhang   PetscFunctionReturn(0);
1607453d3561SHong Zhang }
1608453d3561SHong Zhang EXTERN_C_END
1609453d3561SHong Zhang 
16104a2ae208SSatish Balay #undef __FUNCT__
16114a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary"
16126849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
16132593348eSBarry Smith {
1614b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
16156849ba73SBarry Smith   PetscErrorCode ierr;
1616d0f46423SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2;
1617b24ad042SBarry Smith   int            fd;
161887828ca2SBarry Smith   PetscScalar    *aa;
1619ce6f0cecSBarry Smith   FILE           *file;
16202593348eSBarry Smith 
16213a40ed3dSBarry Smith   PetscFunctionBegin;
1622b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1623d0f46423SBarry Smith   ierr        = PetscMalloc((4+A->rmap->N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
16240700a824SBarry Smith   col_lens[0] = MAT_FILE_CLASSID;
16253b2fbd54SBarry Smith 
1626d0f46423SBarry Smith   col_lens[1] = A->rmap->N;
1627d0f46423SBarry Smith   col_lens[2] = A->cmap->n;
16287e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
16292593348eSBarry Smith 
16302593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1631b6490206SBarry Smith   count = 0;
1632b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1633b6490206SBarry Smith     for (j=0; j<bs; j++) {
1634b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1635b6490206SBarry Smith     }
16362593348eSBarry Smith   }
1637d0f46423SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1638606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
16392593348eSBarry Smith 
16402593348eSBarry Smith   /* store column indices (zero start index) */
1641c1ac3661SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr);
1642b6490206SBarry Smith   count = 0;
1643b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1644b6490206SBarry Smith     for (j=0; j<bs; j++) {
1645b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1646b6490206SBarry Smith         for (l=0; l<bs; l++) {
1647b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
16482593348eSBarry Smith         }
16492593348eSBarry Smith       }
1650b6490206SBarry Smith     }
1651b6490206SBarry Smith   }
16526f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1653606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
16542593348eSBarry Smith 
16552593348eSBarry Smith   /* store nonzero values */
165687828ca2SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
1657b6490206SBarry Smith   count = 0;
1658b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1659b6490206SBarry Smith     for (j=0; j<bs; j++) {
1660b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1661b6490206SBarry Smith         for (l=0; l<bs; l++) {
16627e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1663b6490206SBarry Smith         }
1664b6490206SBarry Smith       }
1665b6490206SBarry Smith     }
1666b6490206SBarry Smith   }
16676f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1668606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1669ce6f0cecSBarry Smith 
1670b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1671ce6f0cecSBarry Smith   if (file) {
1672d0f46423SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs);
1673ce6f0cecSBarry Smith   }
16743a40ed3dSBarry Smith   PetscFunctionReturn(0);
16752593348eSBarry Smith }
16762593348eSBarry Smith 
16774a2ae208SSatish Balay #undef __FUNCT__
16784a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII"
16796849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
16802593348eSBarry Smith {
1681b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1682dfbe8321SBarry Smith   PetscErrorCode    ierr;
1683d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
1684f3ef73ceSBarry Smith   PetscViewerFormat format;
16852593348eSBarry Smith 
16863a40ed3dSBarry Smith   PetscFunctionBegin;
1687b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1688456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
168977431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1690fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1691bcd9e38bSBarry Smith     Mat aij;
1692ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1693bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
16946bf464f9SBarry Smith     ierr = MatDestroy(&aij);CHKERRQ(ierr);
169504929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
169604929863SHong Zhang       PetscFunctionReturn(0);
1697fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1698d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
16997566de4bSShri Abhyankar     ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
170044cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
170144cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
170277431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
170344cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
170444cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1705aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
17060e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1707a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l,
17080e6d2581SBarry Smith                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
17090e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1710a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l,
17110e6d2581SBarry Smith                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
17120e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1713a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
17140ef38995SBarry Smith             }
171544cd7ae7SLois Curfman McInnes #else
17160ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
1717a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
17180ef38995SBarry Smith             }
171944cd7ae7SLois Curfman McInnes #endif
172044cd7ae7SLois Curfman McInnes           }
172144cd7ae7SLois Curfman McInnes         }
1722b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
172344cd7ae7SLois Curfman McInnes       }
172444cd7ae7SLois Curfman McInnes     }
1725d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
17260ef38995SBarry Smith   } else {
1727d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
17287566de4bSShri Abhyankar     ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
1729b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1730b6490206SBarry Smith       for (j=0; j<bs; j++) {
173177431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1732b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1733b6490206SBarry Smith           for (l=0; l<bs; l++) {
1734aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
17350e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
1736a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
17370e6d2581SBarry Smith                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
17380e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
1739a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
17400e6d2581SBarry Smith                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
17410ef38995SBarry Smith             } else {
1742a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
174388685aaeSLois Curfman McInnes             }
174488685aaeSLois Curfman McInnes #else
1745a83599f4SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
174688685aaeSLois Curfman McInnes #endif
17472593348eSBarry Smith           }
17482593348eSBarry Smith         }
1749b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
17502593348eSBarry Smith       }
17512593348eSBarry Smith     }
1752d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1753b6490206SBarry Smith   }
1754b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
17553a40ed3dSBarry Smith   PetscFunctionReturn(0);
17562593348eSBarry Smith }
17572593348eSBarry Smith 
17589804daf3SBarry Smith #include <petscdraw.h>
17594a2ae208SSatish Balay #undef __FUNCT__
17604a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom"
17616849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
17623270192aSSatish Balay {
176377ed5343SBarry Smith   Mat               A = (Mat) Aa;
17643270192aSSatish Balay   Mat_SeqBAIJ       *a=(Mat_SeqBAIJ*)A->data;
17656849ba73SBarry Smith   PetscErrorCode    ierr;
1766d0f46423SBarry Smith   PetscInt          row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
17670e6d2581SBarry Smith   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
17683f1db9ecSBarry Smith   MatScalar         *aa;
1769b0a32e0cSBarry Smith   PetscViewer       viewer;
1770b3e7f47fSJed Brown   PetscViewerFormat format;
17713270192aSSatish Balay 
17723a40ed3dSBarry Smith   PetscFunctionBegin;
177377ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1774b3e7f47fSJed Brown   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
177577ed5343SBarry Smith 
1776b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
177777ed5343SBarry Smith 
17783270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1779b3e7f47fSJed Brown 
1780b3e7f47fSJed Brown   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1781b0a32e0cSBarry Smith     color = PETSC_DRAW_BLUE;
17823270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
17833270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1784d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
17853270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
17863270192aSSatish Balay         aa  = a->a + j*bs2;
17873270192aSSatish Balay         for (k=0; k<bs; k++) {
17883270192aSSatish Balay           for (l=0; l<bs; l++) {
17890e6d2581SBarry Smith             if (PetscRealPart(*aa++) >=  0.) continue;
1790b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
17913270192aSSatish Balay           }
17923270192aSSatish Balay         }
17933270192aSSatish Balay       }
17943270192aSSatish Balay     }
1795b0a32e0cSBarry Smith     color = PETSC_DRAW_CYAN;
17963270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
17973270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1798d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
17993270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
18003270192aSSatish Balay         aa  = a->a + j*bs2;
18013270192aSSatish Balay         for (k=0; k<bs; k++) {
18023270192aSSatish Balay           for (l=0; l<bs; l++) {
18030e6d2581SBarry Smith             if (PetscRealPart(*aa++) != 0.) continue;
1804b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
18053270192aSSatish Balay           }
18063270192aSSatish Balay         }
18073270192aSSatish Balay       }
18083270192aSSatish Balay     }
1809b0a32e0cSBarry Smith     color = PETSC_DRAW_RED;
18103270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
18113270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1812d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
18133270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
18143270192aSSatish Balay         aa  = a->a + j*bs2;
18153270192aSSatish Balay         for (k=0; k<bs; k++) {
18163270192aSSatish Balay           for (l=0; l<bs; l++) {
18170e6d2581SBarry Smith             if (PetscRealPart(*aa++) <= 0.) continue;
1818b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
18193270192aSSatish Balay           }
18203270192aSSatish Balay         }
18213270192aSSatish Balay       }
18223270192aSSatish Balay     }
1823b3e7f47fSJed Brown   } else {
1824b3e7f47fSJed Brown     /* use contour shading to indicate magnitude of values */
1825b3e7f47fSJed Brown     /* first determine max of all nonzero values */
1826b3e7f47fSJed Brown     PetscDraw popup;
1827b3e7f47fSJed Brown     PetscReal scale,maxv = 0.0;
1828b3e7f47fSJed Brown 
1829b3e7f47fSJed Brown     for (i=0; i<a->nz*a->bs2; i++) {
1830b3e7f47fSJed Brown       if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]);
1831b3e7f47fSJed Brown     }
1832b3e7f47fSJed Brown     scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv;
1833b3e7f47fSJed Brown     ierr  = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
183426fbe8dcSKarl Rupp     if (popup) {
183526fbe8dcSKarl Rupp       ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);
183626fbe8dcSKarl Rupp     }
1837b3e7f47fSJed Brown     for (i=0,row=0; i<mbs; i++,row+=bs) {
1838b3e7f47fSJed Brown       for (j=a->i[i]; j<a->i[i+1]; j++) {
1839b3e7f47fSJed Brown         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
1840b3e7f47fSJed Brown         x_l = a->j[j]*bs; x_r = x_l + 1.0;
1841b3e7f47fSJed Brown         aa  = a->a + j*bs2;
1842b3e7f47fSJed Brown         for (k=0; k<bs; k++) {
1843b3e7f47fSJed Brown           for (l=0; l<bs; l++) {
1844b3e7f47fSJed Brown             color = PETSC_DRAW_BASIC_COLORS + (PetscInt)(scale*PetscAbsScalar(*aa++));
1845b3e7f47fSJed Brown             ierr  = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
1846b3e7f47fSJed Brown           }
1847b3e7f47fSJed Brown         }
1848b3e7f47fSJed Brown       }
1849b3e7f47fSJed Brown     }
1850b3e7f47fSJed Brown   }
185177ed5343SBarry Smith   PetscFunctionReturn(0);
185277ed5343SBarry Smith }
18533270192aSSatish Balay 
18544a2ae208SSatish Balay #undef __FUNCT__
18554a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw"
18566849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
185777ed5343SBarry Smith {
1858dfbe8321SBarry Smith   PetscErrorCode ierr;
18590e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1860b0a32e0cSBarry Smith   PetscDraw      draw;
1861ace3abfcSBarry Smith   PetscBool      isnull;
18623270192aSSatish Balay 
186377ed5343SBarry Smith   PetscFunctionBegin;
1864b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1865b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
186677ed5343SBarry Smith 
186777ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1868d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
186977ed5343SBarry Smith   xr  += w;    yr += h;  xl = -w;     yl = -h;
1870b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1871b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
18720298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
18733a40ed3dSBarry Smith   PetscFunctionReturn(0);
18743270192aSSatish Balay }
18753270192aSSatish Balay 
18764a2ae208SSatish Balay #undef __FUNCT__
18774a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ"
1878dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
18792593348eSBarry Smith {
1880dfbe8321SBarry Smith   PetscErrorCode ierr;
1881ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
18822593348eSBarry Smith 
18833a40ed3dSBarry Smith   PetscFunctionBegin;
1884251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1885251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1886251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
188732077d6dSBarry Smith   if (iascii) {
18883a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
18890f5bd95cSBarry Smith   } else if (isbinary) {
18903a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
18910f5bd95cSBarry Smith   } else if (isdraw) {
18923a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
18935cd90555SBarry Smith   } else {
1894a5e6ed63SBarry Smith     Mat B;
1895ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1896a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
18976bf464f9SBarry Smith     ierr = MatDestroy(&B);CHKERRQ(ierr);
18982593348eSBarry Smith   }
18993a40ed3dSBarry Smith   PetscFunctionReturn(0);
19002593348eSBarry Smith }
1901b6490206SBarry Smith 
1902cd0e1443SSatish Balay 
19034a2ae208SSatish Balay #undef __FUNCT__
19044a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ"
1905c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1906cd0e1443SSatish Balay {
1907cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1908c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1909c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1910d0f46423SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
191197e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1912cd0e1443SSatish Balay 
19133a40ed3dSBarry Smith   PetscFunctionBegin;
19142d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1915cd0e1443SSatish Balay     row = im[k]; brow = row/bs;
1916e32f2f54SBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1917e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
19182d61bbb3SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
19192c3acbe9SBarry Smith     nrow = ailen[brow];
19202d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
1921e32f2f54SBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1922e32f2f54SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
19232d61bbb3SSatish Balay       col  = in[l];
19242d61bbb3SSatish Balay       bcol = col/bs;
19252d61bbb3SSatish Balay       cidx = col%bs;
19262d61bbb3SSatish Balay       ridx = row%bs;
19272d61bbb3SSatish Balay       high = nrow;
19282d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
19292d61bbb3SSatish Balay       while (high-low > 5) {
1930cd0e1443SSatish Balay         t = (low+high)/2;
1931cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1932cd0e1443SSatish Balay         else             low  = t;
1933cd0e1443SSatish Balay       }
1934cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1935cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1936cd0e1443SSatish Balay         if (rp[i] == bcol) {
19372d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
19382d61bbb3SSatish Balay           goto finished;
1939cd0e1443SSatish Balay         }
1940cd0e1443SSatish Balay       }
194197e567efSBarry Smith       *v++ = 0.0;
19422d61bbb3SSatish Balay finished:;
1943cd0e1443SSatish Balay     }
1944cd0e1443SSatish Balay   }
19453a40ed3dSBarry Smith   PetscFunctionReturn(0);
1946cd0e1443SSatish Balay }
1947cd0e1443SSatish Balay 
19484a2ae208SSatish Balay #undef __FUNCT__
19494a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ"
1950dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
195192c4ed94SBarry Smith {
195292c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1953e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1954c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
19556849ba73SBarry Smith   PetscErrorCode    ierr;
1956d0f46423SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
1957ace3abfcSBarry Smith   PetscBool         roworiented=a->roworiented;
1958dd6ea824SBarry Smith   const PetscScalar *value     = v;
1959f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
196092c4ed94SBarry Smith 
19613a40ed3dSBarry Smith   PetscFunctionBegin;
19620e324ae4SSatish Balay   if (roworiented) {
19630e324ae4SSatish Balay     stepval = (n-1)*bs;
19640e324ae4SSatish Balay   } else {
19650e324ae4SSatish Balay     stepval = (m-1)*bs;
19660e324ae4SSatish Balay   }
196792c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
196892c4ed94SBarry Smith     row = im[k];
19695ef9f2a5SBarry Smith     if (row < 0) continue;
19702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
1971e32f2f54SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
197292c4ed94SBarry Smith #endif
197392c4ed94SBarry Smith     rp   = aj + ai[row];
197492c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
197592c4ed94SBarry Smith     rmax = imax[row];
197692c4ed94SBarry Smith     nrow = ailen[row];
197792c4ed94SBarry Smith     low  = 0;
1978c71e6ed7SBarry Smith     high = nrow;
197992c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
19805ef9f2a5SBarry Smith       if (in[l] < 0) continue;
19812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
1982e32f2f54SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1);
198392c4ed94SBarry Smith #endif
198492c4ed94SBarry Smith       col = in[l];
198592c4ed94SBarry Smith       if (roworiented) {
198653ef36baSBarry Smith         value = v + (k*(stepval+bs) + l)*bs;
19870e324ae4SSatish Balay       } else {
198853ef36baSBarry Smith         value = v + (l*(stepval+bs) + k)*bs;
198992c4ed94SBarry Smith       }
199026fbe8dcSKarl Rupp       if (col <= lastcol) low = 0;
199126fbe8dcSKarl Rupp       else high = nrow;
1992e2ee6c50SBarry Smith       lastcol = col;
199392c4ed94SBarry Smith       while (high-low > 7) {
199492c4ed94SBarry Smith         t = (low+high)/2;
199592c4ed94SBarry Smith         if (rp[t] > col) high = t;
199692c4ed94SBarry Smith         else             low  = t;
199792c4ed94SBarry Smith       }
199892c4ed94SBarry Smith       for (i=low; i<high; i++) {
199992c4ed94SBarry Smith         if (rp[i] > col) break;
200092c4ed94SBarry Smith         if (rp[i] == col) {
20018a84c255SSatish Balay           bap = ap +  bs2*i;
20020e324ae4SSatish Balay           if (roworiented) {
20038a84c255SSatish Balay             if (is == ADD_VALUES) {
2004dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
2005dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
20068a84c255SSatish Balay                   bap[jj] += *value++;
2007dd9472c6SBarry Smith                 }
2008dd9472c6SBarry Smith               }
20090e324ae4SSatish Balay             } else {
2010dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
2011dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
20120e324ae4SSatish Balay                   bap[jj] = *value++;
20138a84c255SSatish Balay                 }
2014dd9472c6SBarry Smith               }
2015dd9472c6SBarry Smith             }
20160e324ae4SSatish Balay           } else {
20170e324ae4SSatish Balay             if (is == ADD_VALUES) {
201853ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
2019dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
202053ef36baSBarry Smith                   bap[jj] += value[jj];
2021dd9472c6SBarry Smith                 }
202253ef36baSBarry Smith                 bap += bs;
2023dd9472c6SBarry Smith               }
20240e324ae4SSatish Balay             } else {
202553ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
2026dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
202753ef36baSBarry Smith                   bap[jj]  = value[jj];
20280e324ae4SSatish Balay                 }
202953ef36baSBarry Smith                 bap += bs;
20308a84c255SSatish Balay               }
2031dd9472c6SBarry Smith             }
2032dd9472c6SBarry Smith           }
2033f1241b54SBarry Smith           goto noinsert2;
203492c4ed94SBarry Smith         }
203592c4ed94SBarry Smith       }
203689280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
2037e32f2f54SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2038fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2039c03d1d03SSatish Balay       N = nrow++ - 1; high++;
204092c4ed94SBarry Smith       /* shift up all the later entries in this row */
204192c4ed94SBarry Smith       for (ii=N; ii>=i; ii--) {
204292c4ed94SBarry Smith         rp[ii+1] = rp[ii];
2043549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
204492c4ed94SBarry Smith       }
2045549d3d68SSatish Balay       if (N >= i) {
2046549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2047549d3d68SSatish Balay       }
204892c4ed94SBarry Smith       rp[i] = col;
20498a84c255SSatish Balay       bap   = ap +  bs2*i;
20500e324ae4SSatish Balay       if (roworiented) {
2051dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
2052dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs) {
20530e324ae4SSatish Balay             bap[jj] = *value++;
2054dd9472c6SBarry Smith           }
2055dd9472c6SBarry Smith         }
20560e324ae4SSatish Balay       } else {
2057dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
2058dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++) {
20590e324ae4SSatish Balay             *bap++ = *value++;
20600e324ae4SSatish Balay           }
2061dd9472c6SBarry Smith         }
2062dd9472c6SBarry Smith       }
2063f1241b54SBarry Smith noinsert2:;
206492c4ed94SBarry Smith       low = i;
206592c4ed94SBarry Smith     }
206692c4ed94SBarry Smith     ailen[row] = nrow;
206792c4ed94SBarry Smith   }
20683a40ed3dSBarry Smith   PetscFunctionReturn(0);
206992c4ed94SBarry Smith }
207026e093fcSHong Zhang 
20714a2ae208SSatish Balay #undef __FUNCT__
20724a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ"
2073dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
2074584200bdSSatish Balay {
2075584200bdSSatish Balay   Mat_SeqBAIJ    *a     = (Mat_SeqBAIJ*)A->data;
2076c1ac3661SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
2077d0f46423SBarry Smith   PetscInt       m      = A->rmap->N,*ip,N,*ailen = a->ilen;
20786849ba73SBarry Smith   PetscErrorCode ierr;
2079c1ac3661SBarry Smith   PetscInt       mbs  = a->mbs,bs2 = a->bs2,rmax = 0;
20803f1db9ecSBarry Smith   MatScalar      *aa  = a->a,*ap;
20813447b6efSHong Zhang   PetscReal      ratio=0.6;
2082584200bdSSatish Balay 
20833a40ed3dSBarry Smith   PetscFunctionBegin;
20843a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
2085584200bdSSatish Balay 
208643ee02c3SBarry Smith   if (m) rmax = ailen[0];
2087584200bdSSatish Balay   for (i=1; i<mbs; i++) {
2088584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
2089584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
2090d402145bSBarry Smith     rmax    = PetscMax(rmax,ailen[i]);
2091584200bdSSatish Balay     if (fshift) {
2092a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
2093584200bdSSatish Balay       N  = ailen[i];
2094584200bdSSatish Balay       for (j=0; j<N; j++) {
2095584200bdSSatish Balay         ip[j-fshift] = ip[j];
209626fbe8dcSKarl Rupp 
2097549d3d68SSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2098584200bdSSatish Balay       }
2099584200bdSSatish Balay     }
2100584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
2101584200bdSSatish Balay   }
2102584200bdSSatish Balay   if (mbs) {
2103584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
2104584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
2105584200bdSSatish Balay   }
2106584200bdSSatish Balay   /* reset ilen and imax for each row */
2107584200bdSSatish Balay   for (i=0; i<mbs; i++) {
2108584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
2109584200bdSSatish Balay   }
2110a7c10996SSatish Balay   a->nz = ai[mbs];
2111584200bdSSatish Balay 
2112584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
2113b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
2114584200bdSSatish Balay   if (fshift && a->diag) {
2115606d414cSSatish Balay     ierr    = PetscFree(a->diag);CHKERRQ(ierr);
211652e6d16bSBarry Smith     ierr    = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
2117584200bdSSatish Balay     a->diag = 0;
2118584200bdSSatish Balay   }
211965e19b50SBarry Smith   if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);
2120d0f46423SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
2121ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
2122ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
212326fbe8dcSKarl Rupp 
21248e58a170SBarry Smith   A->info.mallocs    += a->reallocs;
2125e2f3b5e9SSatish Balay   a->reallocs         = 0;
21260e6d2581SBarry Smith   A->info.nz_unneeded = (PetscReal)fshift*bs2;
2127cf4441caSHong Zhang 
2128cd6b891eSBarry Smith   ierr = MatCheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
212926fbe8dcSKarl Rupp 
213088e51ccdSHong Zhang   A->same_nonzero = PETSC_TRUE;
21313a40ed3dSBarry Smith   PetscFunctionReturn(0);
2132584200bdSSatish Balay }
2133584200bdSSatish Balay 
2134bea157c4SSatish Balay /*
2135bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
2136bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
2137bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
2138bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
2139bea157c4SSatish Balay */
21404a2ae208SSatish Balay #undef __FUNCT__
21414a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks"
2142c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
2143d9b7c43dSSatish Balay {
2144c1ac3661SBarry Smith   PetscInt  i,j,k,row;
2145ace3abfcSBarry Smith   PetscBool flg;
21463a40ed3dSBarry Smith 
2147433994e6SBarry Smith   PetscFunctionBegin;
2148bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
2149bea157c4SSatish Balay     row = idx[i];
2150bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
2151bea157c4SSatish Balay       sizes[j] = 1;
2152bea157c4SSatish Balay       i++;
2153e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
2154bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
2155bea157c4SSatish Balay       i++;
2156bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
2157bea157c4SSatish Balay       flg = PETSC_TRUE;
2158bea157c4SSatish Balay       for (k=1; k<bs; k++) {
2159bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
2160bea157c4SSatish Balay           flg = PETSC_FALSE;
2161bea157c4SSatish Balay           break;
2162d9b7c43dSSatish Balay         }
2163bea157c4SSatish Balay       }
2164abc0a331SBarry Smith       if (flg) { /* No break in the bs */
2165bea157c4SSatish Balay         sizes[j] = bs;
2166bea157c4SSatish Balay         i       += bs;
2167bea157c4SSatish Balay       } else {
2168bea157c4SSatish Balay         sizes[j] = 1;
2169bea157c4SSatish Balay         i++;
2170bea157c4SSatish Balay       }
2171bea157c4SSatish Balay     }
2172bea157c4SSatish Balay   }
2173bea157c4SSatish Balay   *bs_max = j;
21743a40ed3dSBarry Smith   PetscFunctionReturn(0);
2175d9b7c43dSSatish Balay }
2176d9b7c43dSSatish Balay 
21774a2ae208SSatish Balay #undef __FUNCT__
21784a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ"
21792b40b63fSBarry Smith PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
2180d9b7c43dSSatish Balay {
2181d9b7c43dSSatish Balay   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
2182dfbe8321SBarry Smith   PetscErrorCode    ierr;
2183f4df32b1SMatthew Knepley   PetscInt          i,j,k,count,*rows;
2184d0f46423SBarry Smith   PetscInt          bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max;
218587828ca2SBarry Smith   PetscScalar       zero = 0.0;
21863f1db9ecSBarry Smith   MatScalar         *aa;
218797b48c8fSBarry Smith   const PetscScalar *xx;
218897b48c8fSBarry Smith   PetscScalar       *bb;
2189d9b7c43dSSatish Balay 
21903a40ed3dSBarry Smith   PetscFunctionBegin;
219197b48c8fSBarry Smith   /* fix right hand side if needed */
219297b48c8fSBarry Smith   if (x && b) {
219397b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
219497b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
219597b48c8fSBarry Smith     for (i=0; i<is_n; i++) {
219697b48c8fSBarry Smith       bb[is_idx[i]] = diag*xx[is_idx[i]];
219797b48c8fSBarry Smith     }
219897b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
219997b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
220097b48c8fSBarry Smith   }
220197b48c8fSBarry Smith 
2202d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2203bea157c4SSatish Balay   /* allocate memory for rows,sizes */
2204fca92195SBarry Smith   ierr = PetscMalloc2(is_n,PetscInt,&rows,2*is_n,PetscInt,&sizes);CHKERRQ(ierr);
2205bea157c4SSatish Balay 
2206563b5814SBarry Smith   /* copy IS values to rows, and sort them */
220726fbe8dcSKarl Rupp   for (i=0; i<is_n; i++) rows[i] = is_idx[i];
2208bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
220997b48c8fSBarry Smith 
2210a9817697SBarry Smith   if (baij->keepnonzeropattern) {
221126fbe8dcSKarl Rupp     for (i=0; i<is_n; i++) sizes[i] = 1;
2212dffd3267SBarry Smith     bs_max          = is_n;
221388e51ccdSHong Zhang     A->same_nonzero = PETSC_TRUE;
2214dffd3267SBarry Smith   } else {
2215bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
221626fbe8dcSKarl Rupp 
221788e51ccdSHong Zhang     A->same_nonzero = PETSC_FALSE;
2218dffd3267SBarry Smith   }
2219bea157c4SSatish Balay 
2220bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
2221bea157c4SSatish Balay     row = rows[j];
2222e32f2f54SBarry Smith     if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
2223bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2224b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2225a9817697SBarry Smith     if (sizes[i] == bs && !baij->keepnonzeropattern) {
2226d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2227bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2228bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2229bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
223026fbe8dcSKarl Rupp 
2231bea157c4SSatish Balay           ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr);
2232a07cd24cSSatish Balay         }
2233563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2234bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2235f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2236bea157c4SSatish Balay         }
2237f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2238bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2239f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2240bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2241aa482453SBarry Smith #if defined(PETSC_USE_DEBUG)
2242e32f2f54SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2243bea157c4SSatish Balay #endif
2244bea157c4SSatish Balay       for (k=0; k<count; k++) {
2245d9b7c43dSSatish Balay         aa[0] =  zero;
2246d9b7c43dSSatish Balay         aa   += bs;
2247d9b7c43dSSatish Balay       }
2248d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2249f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2250d9b7c43dSSatish Balay       }
2251d9b7c43dSSatish Balay     }
2252bea157c4SSatish Balay   }
2253bea157c4SSatish Balay 
2254fca92195SBarry Smith   ierr = PetscFree2(rows,sizes);CHKERRQ(ierr);
22559a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22563a40ed3dSBarry Smith   PetscFunctionReturn(0);
2257d9b7c43dSSatish Balay }
22581c351548SSatish Balay 
22594a2ae208SSatish Balay #undef __FUNCT__
226097b48c8fSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqBAIJ"
226197b48c8fSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
226297b48c8fSBarry Smith {
226397b48c8fSBarry Smith   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
226497b48c8fSBarry Smith   PetscErrorCode    ierr;
226597b48c8fSBarry Smith   PetscInt          i,j,k,count;
226697b48c8fSBarry Smith   PetscInt          bs   =A->rmap->bs,bs2=baij->bs2,row,col;
226797b48c8fSBarry Smith   PetscScalar       zero = 0.0;
226897b48c8fSBarry Smith   MatScalar         *aa;
226997b48c8fSBarry Smith   const PetscScalar *xx;
227097b48c8fSBarry Smith   PetscScalar       *bb;
227156777dd2SBarry Smith   PetscBool         *zeroed,vecs = PETSC_FALSE;
227297b48c8fSBarry Smith 
227397b48c8fSBarry Smith   PetscFunctionBegin;
227497b48c8fSBarry Smith   /* fix right hand side if needed */
227597b48c8fSBarry Smith   if (x && b) {
227697b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
227797b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
227856777dd2SBarry Smith     vecs = PETSC_TRUE;
227997b48c8fSBarry Smith   }
228097b48c8fSBarry Smith   A->same_nonzero = PETSC_TRUE;
228197b48c8fSBarry Smith 
228297b48c8fSBarry Smith   /* zero the columns */
228397b48c8fSBarry Smith   ierr = PetscMalloc(A->rmap->n*sizeof(PetscBool),&zeroed);CHKERRQ(ierr);
228497b48c8fSBarry Smith   ierr = PetscMemzero(zeroed,A->rmap->n*sizeof(PetscBool));CHKERRQ(ierr);
228597b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
228697b48c8fSBarry Smith     if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]);
228797b48c8fSBarry Smith     zeroed[is_idx[i]] = PETSC_TRUE;
228897b48c8fSBarry Smith   }
228997b48c8fSBarry Smith   for (i=0; i<A->rmap->N; i++) {
229097b48c8fSBarry Smith     if (!zeroed[i]) {
229197b48c8fSBarry Smith       row = i/bs;
229297b48c8fSBarry Smith       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
229397b48c8fSBarry Smith         for (k=0; k<bs; k++) {
229497b48c8fSBarry Smith           col = bs*baij->j[j] + k;
229597b48c8fSBarry Smith           if (zeroed[col]) {
229697b48c8fSBarry Smith             aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
229756777dd2SBarry Smith             if (vecs) bb[i] -= aa[0]*xx[col];
229897b48c8fSBarry Smith             aa[0] = 0.0;
229997b48c8fSBarry Smith           }
230097b48c8fSBarry Smith         }
230197b48c8fSBarry Smith       }
230256777dd2SBarry Smith     } else if (vecs) bb[i] = diag*xx[i];
230397b48c8fSBarry Smith   }
230497b48c8fSBarry Smith   ierr = PetscFree(zeroed);CHKERRQ(ierr);
230556777dd2SBarry Smith   if (vecs) {
230656777dd2SBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
230756777dd2SBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
230856777dd2SBarry Smith   }
230997b48c8fSBarry Smith 
231097b48c8fSBarry Smith   /* zero the rows */
231197b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
231297b48c8fSBarry Smith     row   = is_idx[i];
231397b48c8fSBarry Smith     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
231497b48c8fSBarry Smith     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
231597b48c8fSBarry Smith     for (k=0; k<count; k++) {
231697b48c8fSBarry Smith       aa[0] =  zero;
231797b48c8fSBarry Smith       aa   += bs;
231897b48c8fSBarry Smith     }
2319d4a378daSJed Brown     if (diag != (PetscScalar)0.0) {
232097b48c8fSBarry Smith       ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
232197b48c8fSBarry Smith     }
232297b48c8fSBarry Smith   }
232397b48c8fSBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
232497b48c8fSBarry Smith   PetscFunctionReturn(0);
232597b48c8fSBarry Smith }
232697b48c8fSBarry Smith 
232797b48c8fSBarry Smith #undef __FUNCT__
23284a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ"
2329c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
23302d61bbb3SSatish Balay {
23312d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2332e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2333c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2334d0f46423SBarry Smith   PetscInt       *aj  =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
23356849ba73SBarry Smith   PetscErrorCode ierr;
2336c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2337ace3abfcSBarry Smith   PetscBool      roworiented=a->roworiented;
23383f1db9ecSBarry Smith   MatScalar      *ap,value,*aa=a->a,*bap;
23392d61bbb3SSatish Balay 
23402d61bbb3SSatish Balay   PetscFunctionBegin;
234171fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
23422d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2343085a36d4SBarry Smith     row  = im[k];
2344085a36d4SBarry Smith     brow = row/bs;
23455ef9f2a5SBarry Smith     if (row < 0) continue;
23462515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2347e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
23482d61bbb3SSatish Balay #endif
23492d61bbb3SSatish Balay     rp   = aj + ai[brow];
23502d61bbb3SSatish Balay     ap   = aa + bs2*ai[brow];
23512d61bbb3SSatish Balay     rmax = imax[brow];
23522d61bbb3SSatish Balay     nrow = ailen[brow];
23532d61bbb3SSatish Balay     low  = 0;
2354c71e6ed7SBarry Smith     high = nrow;
23552d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
23565ef9f2a5SBarry Smith       if (in[l] < 0) continue;
23572515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2358e32f2f54SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
23592d61bbb3SSatish Balay #endif
23602d61bbb3SSatish Balay       col  = in[l]; bcol = col/bs;
23612d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
23622d61bbb3SSatish Balay       if (roworiented) {
23635ef9f2a5SBarry Smith         value = v[l + k*n];
23642d61bbb3SSatish Balay       } else {
23652d61bbb3SSatish Balay         value = v[k + l*m];
23662d61bbb3SSatish Balay       }
23677cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2368e2ee6c50SBarry Smith       lastcol = col;
23692d61bbb3SSatish Balay       while (high-low > 7) {
23702d61bbb3SSatish Balay         t = (low+high)/2;
23712d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
23722d61bbb3SSatish Balay         else              low  = t;
23732d61bbb3SSatish Balay       }
23742d61bbb3SSatish Balay       for (i=low; i<high; i++) {
23752d61bbb3SSatish Balay         if (rp[i] > bcol) break;
23762d61bbb3SSatish Balay         if (rp[i] == bcol) {
23772d61bbb3SSatish Balay           bap = ap +  bs2*i + bs*cidx + ridx;
23782d61bbb3SSatish Balay           if (is == ADD_VALUES) *bap += value;
23792d61bbb3SSatish Balay           else                  *bap  = value;
23802d61bbb3SSatish Balay           goto noinsert1;
23812d61bbb3SSatish Balay         }
23822d61bbb3SSatish Balay       }
23832d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2384e32f2f54SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2385fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2386c03d1d03SSatish Balay       N = nrow++ - 1; high++;
23872d61bbb3SSatish Balay       /* shift up all the later entries in this row */
23882d61bbb3SSatish Balay       for (ii=N; ii>=i; ii--) {
23892d61bbb3SSatish Balay         rp[ii+1] = rp[ii];
2390549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
23912d61bbb3SSatish Balay       }
2392549d3d68SSatish Balay       if (N>=i) {
2393549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2394549d3d68SSatish Balay       }
23952d61bbb3SSatish Balay       rp[i]                      = bcol;
23962d61bbb3SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
2397085a36d4SBarry Smith       a->nz++;
23982d61bbb3SSatish Balay noinsert1:;
23992d61bbb3SSatish Balay       low = i;
24002d61bbb3SSatish Balay     }
24012d61bbb3SSatish Balay     ailen[brow] = nrow;
24022d61bbb3SSatish Balay   }
240388e51ccdSHong Zhang   A->same_nonzero = PETSC_FALSE;
24042d61bbb3SSatish Balay   PetscFunctionReturn(0);
24052d61bbb3SSatish Balay }
24062d61bbb3SSatish Balay 
24074a2ae208SSatish Balay #undef __FUNCT__
24084a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ"
24090481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info)
24102d61bbb3SSatish Balay {
24112d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
24122d61bbb3SSatish Balay   Mat            outA;
2413dfbe8321SBarry Smith   PetscErrorCode ierr;
2414ace3abfcSBarry Smith   PetscBool      row_identity,col_identity;
24152d61bbb3SSatish Balay 
24162d61bbb3SSatish Balay   PetscFunctionBegin;
2417e32f2f54SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2418667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2419667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2420f23aa3ddSBarry Smith   if (!row_identity || !col_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
24212d61bbb3SSatish Balay 
24222d61bbb3SSatish Balay   outA            = inA;
2423d5f3da31SBarry Smith   inA->factortype = MAT_FACTOR_LU;
24242d61bbb3SSatish Balay 
2425c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2426cf242676SKris Buschelman 
2427c38d4ed2SBarry Smith   ierr   = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
24286bf464f9SBarry Smith   ierr   = ISDestroy(&a->row);CHKERRQ(ierr);
2429c3122656SLisandro Dalcin   a->row = row;
2430c38d4ed2SBarry Smith   ierr   = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
24316bf464f9SBarry Smith   ierr   = ISDestroy(&a->col);CHKERRQ(ierr);
2432c3122656SLisandro Dalcin   a->col = col;
2433c38d4ed2SBarry Smith 
2434c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
24356bf464f9SBarry Smith   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
24364c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
243752e6d16bSBarry Smith   ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
2438c38d4ed2SBarry Smith 
2439ace3abfcSBarry Smith   ierr = MatSeqBAIJSetNumericFactorization_inplace(inA,(PetscBool)(row_identity && col_identity));CHKERRQ(ierr);
2440c38d4ed2SBarry Smith   if (!a->solve_work) {
2441d0f46423SBarry Smith     ierr = PetscMalloc((inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
2442d0f46423SBarry Smith     ierr = PetscLogObjectMemory(inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2443c38d4ed2SBarry Smith   }
2444719d5645SBarry Smith   ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr);
24452d61bbb3SSatish Balay   PetscFunctionReturn(0);
24462d61bbb3SSatish Balay }
2447d9b7c43dSSatish Balay 
2448fb2e594dSBarry Smith EXTERN_C_BEGIN
24494a2ae208SSatish Balay #undef __FUNCT__
24504a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ"
24517087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
245227a8da17SBarry Smith {
245327a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)mat->data;
2454bdb1c0e1SJed Brown   PetscInt    i,nz,mbs;
245527a8da17SBarry Smith 
245627a8da17SBarry Smith   PetscFunctionBegin;
2457b32cb4a7SJed Brown   nz  = baij->maxnz;
2458bdb1c0e1SJed Brown   mbs = baij->mbs;
245927a8da17SBarry Smith   for (i=0; i<nz; i++) {
246027a8da17SBarry Smith     baij->j[i] = indices[i];
246127a8da17SBarry Smith   }
246227a8da17SBarry Smith   baij->nz = nz;
2463bdb1c0e1SJed Brown   for (i=0; i<mbs; i++) {
246427a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
246527a8da17SBarry Smith   }
246627a8da17SBarry Smith   PetscFunctionReturn(0);
246727a8da17SBarry Smith }
2468fb2e594dSBarry Smith EXTERN_C_END
246927a8da17SBarry Smith 
24704a2ae208SSatish Balay #undef __FUNCT__
24714a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices"
247227a8da17SBarry Smith /*@
247327a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
247427a8da17SBarry Smith        in the matrix.
247527a8da17SBarry Smith 
247627a8da17SBarry Smith   Input Parameters:
247727a8da17SBarry Smith +  mat - the SeqBAIJ matrix
247827a8da17SBarry Smith -  indices - the column indices
247927a8da17SBarry Smith 
248015091d37SBarry Smith   Level: advanced
248115091d37SBarry Smith 
248227a8da17SBarry Smith   Notes:
248327a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
248427a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
248527a8da17SBarry Smith   of the MatSetValues() operation.
248627a8da17SBarry Smith 
248727a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2488d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
248927a8da17SBarry Smith 
249027a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
249127a8da17SBarry Smith 
249227a8da17SBarry Smith @*/
24937087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
249427a8da17SBarry Smith {
24954ac538c5SBarry Smith   PetscErrorCode ierr;
249627a8da17SBarry Smith 
249727a8da17SBarry Smith   PetscFunctionBegin;
24980700a824SBarry Smith   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
24994482741eSBarry Smith   PetscValidPointer(indices,2);
25004ac538c5SBarry Smith   ierr = PetscUseMethod(mat,"MatSeqBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr);
250127a8da17SBarry Smith   PetscFunctionReturn(0);
250227a8da17SBarry Smith }
250327a8da17SBarry Smith 
25044a2ae208SSatish Balay #undef __FUNCT__
2505985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ"
2506985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2507273d9f13SBarry Smith {
2508273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2509dfbe8321SBarry Smith   PetscErrorCode ierr;
2510c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2511273d9f13SBarry Smith   PetscReal      atmp;
251287828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2513273d9f13SBarry Smith   MatScalar      *aa;
2514c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2515273d9f13SBarry Smith 
2516273d9f13SBarry Smith   PetscFunctionBegin;
2517e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2518d0f46423SBarry Smith   bs  = A->rmap->bs;
2519273d9f13SBarry Smith   aa  = a->a;
2520273d9f13SBarry Smith   ai  = a->i;
2521273d9f13SBarry Smith   aj  = a->j;
2522273d9f13SBarry Smith   mbs = a->mbs;
2523273d9f13SBarry Smith 
25242dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
25251ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2526273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2527e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2528273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2529273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2530273d9f13SBarry Smith     brow  = bs*i;
2531273d9f13SBarry Smith     for (j=0; j<ncols; j++) {
2532273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++) {
2533273d9f13SBarry Smith         for (krow=0; krow<bs; krow++) {
2534273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2535273d9f13SBarry Smith           row  = brow + krow;   /* row index */
2536a83599f4SBarry Smith           /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */
2537985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2538273d9f13SBarry Smith         }
2539273d9f13SBarry Smith       }
2540273d9f13SBarry Smith       aj++;
2541273d9f13SBarry Smith     }
2542273d9f13SBarry Smith   }
25431ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2544273d9f13SBarry Smith   PetscFunctionReturn(0);
2545273d9f13SBarry Smith }
2546273d9f13SBarry Smith 
25474a2ae208SSatish Balay #undef __FUNCT__
25483c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ"
25493c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
25503c896bc6SHong Zhang {
25513c896bc6SHong Zhang   PetscErrorCode ierr;
25523c896bc6SHong Zhang 
25533c896bc6SHong Zhang   PetscFunctionBegin;
25543c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
25553c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
25563c896bc6SHong Zhang     Mat_SeqBAIJ *a  = (Mat_SeqBAIJ*)A->data;
25573c896bc6SHong Zhang     Mat_SeqBAIJ *b  = (Mat_SeqBAIJ*)B->data;
2558d88c0aacSHong Zhang     PetscInt    ambs=a->mbs,bmbs=b->mbs,abs=A->rmap->bs,bbs=B->rmap->bs,bs2=abs*abs;
25593c896bc6SHong Zhang 
2560d88c0aacSHong Zhang     if (a->i[ambs] != b->i[bmbs]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzero blocks in matrices A %D and B %D are different",a->i[ambs],b->i[bmbs]);
2561d88c0aacSHong Zhang     if (abs != bbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Block size A %D and B %D are different",abs,bbs);
2562d88c0aacSHong Zhang     ierr = PetscMemcpy(b->a,a->a,(bs2*a->i[ambs])*sizeof(PetscScalar));CHKERRQ(ierr);
25633c896bc6SHong Zhang   } else {
25643c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
25653c896bc6SHong Zhang   }
25663c896bc6SHong Zhang   PetscFunctionReturn(0);
25673c896bc6SHong Zhang }
25683c896bc6SHong Zhang 
25693c896bc6SHong Zhang #undef __FUNCT__
25704994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqBAIJ"
25714994cf47SJed Brown PetscErrorCode MatSetUp_SeqBAIJ(Mat A)
2572273d9f13SBarry Smith {
2573dfbe8321SBarry Smith   PetscErrorCode ierr;
2574273d9f13SBarry Smith 
2575273d9f13SBarry Smith   PetscFunctionBegin;
2576535b19f3SBarry Smith   ierr =  MatSeqBAIJSetPreallocation_SeqBAIJ(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr);
2577273d9f13SBarry Smith   PetscFunctionReturn(0);
2578273d9f13SBarry Smith }
2579273d9f13SBarry Smith 
25804a2ae208SSatish Balay #undef __FUNCT__
25818c778c55SBarry Smith #define __FUNCT__ "MatSeqBAIJGetArray_SeqBAIJ"
25828c778c55SBarry Smith PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2583f2a5309cSSatish Balay {
2584f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
25856e111a19SKarl Rupp 
2586f2a5309cSSatish Balay   PetscFunctionBegin;
2587f2a5309cSSatish Balay   *array = a->a;
2588f2a5309cSSatish Balay   PetscFunctionReturn(0);
2589f2a5309cSSatish Balay }
2590f2a5309cSSatish Balay 
25914a2ae208SSatish Balay #undef __FUNCT__
25928c778c55SBarry Smith #define __FUNCT__ "MatSeqBAIJRestoreArray_SeqBAIJ"
25938c778c55SBarry Smith PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2594f2a5309cSSatish Balay {
2595f2a5309cSSatish Balay   PetscFunctionBegin;
2596f2a5309cSSatish Balay   PetscFunctionReturn(0);
2597f2a5309cSSatish Balay }
2598f2a5309cSSatish Balay 
259942ee4b1aSHong Zhang #undef __FUNCT__
260042ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ"
2601f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
260242ee4b1aSHong Zhang {
260342ee4b1aSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data,*y = (Mat_SeqBAIJ*)Y->data;
2604dfbe8321SBarry Smith   PetscErrorCode ierr;
2605e838b9e7SJed Brown   PetscInt       i,bs=Y->rmap->bs,j,bs2=bs*bs;
2606e838b9e7SJed Brown   PetscBLASInt   one=1;
260742ee4b1aSHong Zhang 
260842ee4b1aSHong Zhang   PetscFunctionBegin;
260942ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2610f4df32b1SMatthew Knepley     PetscScalar  alpha = a;
2611c5df96a5SBarry Smith     PetscBLASInt bnz;
2612c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
2613a83cb05cSBarry Smith     PetscStackCall("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
2614c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2615c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
2616c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
26176bf464f9SBarry Smith       ierr = MatDestroy(&y->XtoY);CHKERRQ(ierr);
2618c537a176SHong Zhang     }
2619c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
26200298fd71SBarry Smith       ierr    = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,NULL, y->i,y->j,NULL, &y->xtoy);CHKERRQ(ierr);
2621c4319e64SHong Zhang       y->XtoY = X;
2622c009d632SSatish Balay       ierr    = PetscObjectReference((PetscObject)X);CHKERRQ(ierr);
2623c537a176SHong Zhang     }
2624c537a176SHong Zhang     for (i=0; i<x->nz; i++) {
2625c4319e64SHong Zhang       j = 0;
2626c4319e64SHong Zhang       while (j < bs2) {
2627f4df32b1SMatthew Knepley         y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]);
2628c4319e64SHong Zhang         j++;
2629c537a176SHong Zhang       }
2630c4319e64SHong Zhang     }
26311e2582c4SBarry Smith     ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr);
263242ee4b1aSHong Zhang   } else {
2633f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
263442ee4b1aSHong Zhang   }
263542ee4b1aSHong Zhang   PetscFunctionReturn(0);
263642ee4b1aSHong Zhang }
263742ee4b1aSHong Zhang 
263899cafbc1SBarry Smith #undef __FUNCT__
263999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ"
264099cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
264199cafbc1SBarry Smith {
264299cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
264399cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2644dd6ea824SBarry Smith   MatScalar   *aa = a->a;
264599cafbc1SBarry Smith 
264699cafbc1SBarry Smith   PetscFunctionBegin;
264799cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
264899cafbc1SBarry Smith   PetscFunctionReturn(0);
264999cafbc1SBarry Smith }
265099cafbc1SBarry Smith 
265199cafbc1SBarry Smith #undef __FUNCT__
265299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ"
265399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
265499cafbc1SBarry Smith {
265599cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
265699cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2657dd6ea824SBarry Smith   MatScalar   *aa = a->a;
265899cafbc1SBarry Smith 
265999cafbc1SBarry Smith   PetscFunctionBegin;
266099cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
266199cafbc1SBarry Smith   PetscFunctionReturn(0);
266299cafbc1SBarry Smith }
266399cafbc1SBarry Smith 
26643acb8795SBarry Smith extern PetscErrorCode MatFDColoringCreate_SeqAIJ(Mat,ISColoring,MatFDColoring);
26653acb8795SBarry Smith 
26663acb8795SBarry Smith #undef __FUNCT__
26673acb8795SBarry Smith #define __FUNCT__ "MatGetColumnIJ_SeqBAIJ"
26683acb8795SBarry Smith /*
26693acb8795SBarry Smith     Code almost idential to MatGetColumnIJ_SeqAIJ() should share common code
26703acb8795SBarry Smith */
26711a83f524SJed Brown PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
26723acb8795SBarry Smith {
26733acb8795SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
26743acb8795SBarry Smith   PetscErrorCode ierr;
26753acb8795SBarry Smith   PetscInt       bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs;
26763acb8795SBarry Smith   PetscInt       nz = a->i[m],row,*jj,mr,col;
26773acb8795SBarry Smith 
26783acb8795SBarry Smith   PetscFunctionBegin;
26793acb8795SBarry Smith   *nn = n;
26803acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
2681e7e72b3dSBarry Smith   if (symmetric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not for BAIJ matrices");
2682e7e72b3dSBarry Smith   else {
26833acb8795SBarry Smith     ierr = PetscMalloc((n+1)*sizeof(PetscInt),&collengths);CHKERRQ(ierr);
26843acb8795SBarry Smith     ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
26853acb8795SBarry Smith     ierr = PetscMalloc((n+1)*sizeof(PetscInt),&cia);CHKERRQ(ierr);
26863acb8795SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&cja);CHKERRQ(ierr);
26873acb8795SBarry Smith     jj   = a->j;
26883acb8795SBarry Smith     for (i=0; i<nz; i++) {
26893acb8795SBarry Smith       collengths[jj[i]]++;
26903acb8795SBarry Smith     }
26913acb8795SBarry Smith     cia[0] = oshift;
26923acb8795SBarry Smith     for (i=0; i<n; i++) {
26933acb8795SBarry Smith       cia[i+1] = cia[i] + collengths[i];
26943acb8795SBarry Smith     }
26953acb8795SBarry Smith     ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
26963acb8795SBarry Smith     jj   = a->j;
26973acb8795SBarry Smith     for (row=0; row<m; row++) {
26983acb8795SBarry Smith       mr = a->i[row+1] - a->i[row];
26993acb8795SBarry Smith       for (i=0; i<mr; i++) {
27003acb8795SBarry Smith         col = *jj++;
270126fbe8dcSKarl Rupp 
27023acb8795SBarry Smith         cja[cia[col] + collengths[col]++ - oshift] = row + oshift;
27033acb8795SBarry Smith       }
27043acb8795SBarry Smith     }
27053acb8795SBarry Smith     ierr = PetscFree(collengths);CHKERRQ(ierr);
27063acb8795SBarry Smith     *ia  = cia; *ja = cja;
27073acb8795SBarry Smith   }
27083acb8795SBarry Smith   PetscFunctionReturn(0);
27093acb8795SBarry Smith }
27103acb8795SBarry Smith 
27113acb8795SBarry Smith #undef __FUNCT__
27123acb8795SBarry Smith #define __FUNCT__ "MatRestoreColumnIJ_SeqBAIJ"
27131a83f524SJed Brown PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
27143acb8795SBarry Smith {
27153acb8795SBarry Smith   PetscErrorCode ierr;
27163acb8795SBarry Smith 
27173acb8795SBarry Smith   PetscFunctionBegin;
27183acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
27193acb8795SBarry Smith   ierr = PetscFree(*ia);CHKERRQ(ierr);
27203acb8795SBarry Smith   ierr = PetscFree(*ja);CHKERRQ(ierr);
27213acb8795SBarry Smith   PetscFunctionReturn(0);
27223acb8795SBarry Smith }
27233acb8795SBarry Smith 
2724f6d58c54SBarry Smith #undef __FUNCT__
2725f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringApply_BAIJ"
27267087cfbeSBarry Smith PetscErrorCode  MatFDColoringApply_BAIJ(Mat J,MatFDColoring coloring,Vec x1,MatStructure *flag,void *sctx)
2727f6d58c54SBarry Smith {
2728f6d58c54SBarry Smith   PetscErrorCode (*f)(void*,Vec,Vec,void*) = (PetscErrorCode (*)(void*,Vec,Vec,void*))coloring->f;
2729f6d58c54SBarry Smith   PetscErrorCode ierr;
27304e269d77SPeter Brune   PetscInt       bs = J->rmap->bs,i,j,k,start,end,l,row,col,*srows,**vscaleforrow;
2731f6d58c54SBarry Smith   PetscScalar    dx,*y,*xx,*w3_array;
2732f6d58c54SBarry Smith   PetscScalar    *vscale_array;
2733f6d58c54SBarry Smith   PetscReal      epsilon = coloring->error_rel,umin = coloring->umin,unorm;
2734f6d58c54SBarry Smith   Vec            w1      = coloring->w1,w2=coloring->w2,w3;
2735f6d58c54SBarry Smith   void           *fctx   = coloring->fctx;
2736ace3abfcSBarry Smith   PetscBool      flg     = PETSC_FALSE;
2737f6d58c54SBarry Smith   PetscInt       ctype   = coloring->ctype,N,col_start=0,col_end=0;
2738f6d58c54SBarry Smith   Vec            x1_tmp;
2739f6d58c54SBarry Smith 
2740f6d58c54SBarry Smith   PetscFunctionBegin;
27410700a824SBarry Smith   PetscValidHeaderSpecific(J,MAT_CLASSID,1);
27420700a824SBarry Smith   PetscValidHeaderSpecific(coloring,MAT_FDCOLORING_CLASSID,2);
27430700a824SBarry Smith   PetscValidHeaderSpecific(x1,VEC_CLASSID,3);
2744e32f2f54SBarry Smith   if (!f) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatFDColoringSetFunction()");
2745f6d58c54SBarry Smith 
2746f6d58c54SBarry Smith   ierr = PetscLogEventBegin(MAT_FDColoringApply,coloring,J,x1,0);CHKERRQ(ierr);
2747f6d58c54SBarry Smith   ierr = MatSetUnfactored(J);CHKERRQ(ierr);
27480298fd71SBarry Smith   ierr = PetscOptionsGetBool(NULL,"-mat_fd_coloring_dont_rezero",&flg,NULL);CHKERRQ(ierr);
2749f6d58c54SBarry Smith   if (flg) {
2750f6d58c54SBarry Smith     ierr = PetscInfo(coloring,"Not calling MatZeroEntries()\n");CHKERRQ(ierr);
2751f6d58c54SBarry Smith   } else {
2752ace3abfcSBarry Smith     PetscBool assembled;
2753f6d58c54SBarry Smith     ierr = MatAssembled(J,&assembled);CHKERRQ(ierr);
2754f6d58c54SBarry Smith     if (assembled) {
2755f6d58c54SBarry Smith       ierr = MatZeroEntries(J);CHKERRQ(ierr);
2756f6d58c54SBarry Smith     }
2757f6d58c54SBarry Smith   }
2758f6d58c54SBarry Smith 
2759f6d58c54SBarry Smith   x1_tmp = x1;
2760f6d58c54SBarry Smith   if (!coloring->vscale) {
2761f6d58c54SBarry Smith     ierr = VecDuplicate(x1_tmp,&coloring->vscale);CHKERRQ(ierr);
2762f6d58c54SBarry Smith   }
2763f6d58c54SBarry Smith 
2764f6d58c54SBarry Smith   if (coloring->htype[0] == 'w') { /* tacky test; need to make systematic if we add other approaches to computing h*/
2765f6d58c54SBarry Smith     ierr = VecNorm(x1_tmp,NORM_2,&unorm);CHKERRQ(ierr);
2766f6d58c54SBarry Smith   }
2767f6d58c54SBarry Smith   ierr = VecGetOwnershipRange(w1,&start,&end);CHKERRQ(ierr); /* OwnershipRange is used by ghosted x! */
2768f6d58c54SBarry Smith 
2769f6d58c54SBarry Smith   /* Set w1 = F(x1) */
27704e269d77SPeter Brune   if (!coloring->fset) {
2771f6d58c54SBarry Smith     ierr = PetscLogEventBegin(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2772f6d58c54SBarry Smith     ierr = (*f)(sctx,x1_tmp,w1,fctx);CHKERRQ(ierr);
2773f6d58c54SBarry Smith     ierr = PetscLogEventEnd(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
27744e269d77SPeter Brune   } else {
27754e269d77SPeter Brune     coloring->fset = PETSC_FALSE;
2776f6d58c54SBarry Smith   }
2777f6d58c54SBarry Smith 
2778f6d58c54SBarry Smith   if (!coloring->w3) {
2779f6d58c54SBarry Smith     ierr = VecDuplicate(x1_tmp,&coloring->w3);CHKERRQ(ierr);
2780f6d58c54SBarry Smith     ierr = PetscLogObjectParent(coloring,coloring->w3);CHKERRQ(ierr);
2781f6d58c54SBarry Smith   }
2782f6d58c54SBarry Smith   w3 = coloring->w3;
2783f6d58c54SBarry Smith 
2784f6d58c54SBarry Smith   CHKMEMQ;
2785f6d58c54SBarry Smith   /* Compute all the local scale factors, including ghost points */
2786f6d58c54SBarry Smith   ierr = VecGetLocalSize(x1_tmp,&N);CHKERRQ(ierr);
2787f6d58c54SBarry Smith   ierr = VecGetArray(x1_tmp,&xx);CHKERRQ(ierr);
2788f6d58c54SBarry Smith   ierr = VecGetArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2789f6d58c54SBarry Smith   if (ctype == IS_COLORING_GHOSTED) {
2790f6d58c54SBarry Smith     col_start = 0; col_end = N;
2791f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GLOBAL) {
2792f6d58c54SBarry Smith     xx           = xx - start;
2793f6d58c54SBarry Smith     vscale_array = vscale_array - start;
2794f6d58c54SBarry Smith     col_start    = start; col_end = N + start;
279526fbe8dcSKarl Rupp   }
279626fbe8dcSKarl Rupp   CHKMEMQ;
2797f6d58c54SBarry Smith   for (col=col_start; col<col_end; col++) {
2798f6d58c54SBarry Smith     /* Loop over each local column, vscale[col] = 1./(epsilon*dx[col]) */
2799f6d58c54SBarry Smith     if (coloring->htype[0] == 'w') {
2800f6d58c54SBarry Smith       dx = 1.0 + unorm;
2801f6d58c54SBarry Smith     } else {
2802f6d58c54SBarry Smith       dx = xx[col];
2803f6d58c54SBarry Smith     }
2804d4a378daSJed Brown     if (dx == (PetscScalar)0.0) dx = 1.0;
2805f6d58c54SBarry Smith     if (PetscAbsScalar(dx) < umin && PetscRealPart(dx) >= 0.0)     dx = umin;
2806f6d58c54SBarry Smith     else if (PetscRealPart(dx) < 0.0 && PetscAbsScalar(dx) < umin) dx = -umin;
2807f6d58c54SBarry Smith     dx               *= epsilon;
2808d4a378daSJed Brown     vscale_array[col] = (PetscScalar)1.0/dx;
2809f6d58c54SBarry Smith   }     CHKMEMQ;
2810f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) vscale_array = vscale_array + start;
2811f6d58c54SBarry Smith   ierr = VecRestoreArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2812f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) {
2813f6d58c54SBarry Smith     ierr = VecGhostUpdateBegin(coloring->vscale,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2814f6d58c54SBarry Smith     ierr = VecGhostUpdateEnd(coloring->vscale,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2815f6d58c54SBarry Smith   }
2816f6d58c54SBarry Smith   CHKMEMQ;
2817f6d58c54SBarry Smith   if (coloring->vscaleforrow) {
2818f6d58c54SBarry Smith     vscaleforrow = coloring->vscaleforrow;
2819e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Null Object: coloring->vscaleforrow");
2820f6d58c54SBarry Smith 
2821f6d58c54SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&srows);CHKERRQ(ierr);
2822f6d58c54SBarry Smith   /*
2823f6d58c54SBarry Smith     Loop over each color
2824f6d58c54SBarry Smith   */
2825f6d58c54SBarry Smith   ierr = VecGetArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2826f6d58c54SBarry Smith   for (k=0; k<coloring->ncolors; k++) {
2827f6d58c54SBarry Smith     coloring->currentcolor = k;
2828f6d58c54SBarry Smith     for (i=0; i<bs; i++) {
2829f6d58c54SBarry Smith       ierr = VecCopy(x1_tmp,w3);CHKERRQ(ierr);
2830f6d58c54SBarry Smith       ierr = VecGetArray(w3,&w3_array);CHKERRQ(ierr);
2831f6d58c54SBarry Smith       if (ctype == IS_COLORING_GLOBAL) w3_array = w3_array - start;
2832f6d58c54SBarry Smith       /*
2833f6d58c54SBarry Smith         Loop over each column associated with color
2834f6d58c54SBarry Smith         adding the perturbation to the vector w3.
2835f6d58c54SBarry Smith       */
2836f6d58c54SBarry Smith       for (l=0; l<coloring->ncolumns[k]; l++) {
2837f6d58c54SBarry Smith         col = i + bs*coloring->columns[k][l];    /* local column of the matrix we are probing for */
2838f6d58c54SBarry Smith         if (coloring->htype[0] == 'w') {
2839f6d58c54SBarry Smith           dx = 1.0 + unorm;
2840f6d58c54SBarry Smith         } else {
2841f6d58c54SBarry Smith           dx = xx[col];
2842f6d58c54SBarry Smith         }
2843d4a378daSJed Brown         if (dx == (PetscScalar)0.0) dx = 1.0;
2844f6d58c54SBarry Smith         if (PetscAbsScalar(dx) < umin && PetscRealPart(dx) >= 0.0)     dx = umin;
2845f6d58c54SBarry Smith         else if (PetscRealPart(dx) < 0.0 && PetscAbsScalar(dx) < umin) dx = -umin;
2846f6d58c54SBarry Smith         dx *= epsilon;
2847e32f2f54SBarry Smith         if (!PetscAbsScalar(dx)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Computed 0 differencing parameter");
2848f6d58c54SBarry Smith         w3_array[col] += dx;
2849f6d58c54SBarry Smith       }
2850f6d58c54SBarry Smith       if (ctype == IS_COLORING_GLOBAL) w3_array = w3_array + start;
2851f6d58c54SBarry Smith       ierr = VecRestoreArray(w3,&w3_array);CHKERRQ(ierr);
2852f6d58c54SBarry Smith 
2853f6d58c54SBarry Smith       /*
2854f6d58c54SBarry Smith         Evaluate function at w3 = x1 + dx (here dx is a vector of perturbations)
2855f6d58c54SBarry Smith         w2 = F(x1 + dx) - F(x1)
2856f6d58c54SBarry Smith       */
2857f6d58c54SBarry Smith       ierr = PetscLogEventBegin(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2858f6d58c54SBarry Smith       ierr = (*f)(sctx,w3,w2,fctx);CHKERRQ(ierr);
2859f6d58c54SBarry Smith       ierr = PetscLogEventEnd(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2860f6d58c54SBarry Smith       ierr = VecAXPY(w2,-1.0,w1);CHKERRQ(ierr);
2861f6d58c54SBarry Smith 
2862f6d58c54SBarry Smith       /*
2863f6d58c54SBarry Smith         Loop over rows of vector, putting results into Jacobian matrix
2864f6d58c54SBarry Smith       */
2865f6d58c54SBarry Smith       ierr = VecGetArray(w2,&y);CHKERRQ(ierr);
2866f6d58c54SBarry Smith       for (l=0; l<coloring->nrows[k]; l++) {
2867f6d58c54SBarry Smith         row = bs*coloring->rows[k][l];                /* local row index */
2868f6d58c54SBarry Smith         col = i + bs*coloring->columnsforrow[k][l];       /* global column index */
2869f6d58c54SBarry Smith         for (j=0; j<bs; j++) {
2870f6d58c54SBarry Smith           y[row+j] *= vscale_array[j+bs*vscaleforrow[k][l]];
2871f6d58c54SBarry Smith           srows[j]  = row + start + j;
2872f6d58c54SBarry Smith         }
2873f6d58c54SBarry Smith         ierr = MatSetValues(J,bs,srows,1,&col,y+row,INSERT_VALUES);CHKERRQ(ierr);
2874f6d58c54SBarry Smith       }
2875f6d58c54SBarry Smith       ierr = VecRestoreArray(w2,&y);CHKERRQ(ierr);
2876f6d58c54SBarry Smith     }
2877f6d58c54SBarry Smith   } /* endof for each color */
2878f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) xx = xx + start;
2879f6d58c54SBarry Smith   ierr = VecRestoreArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2880f6d58c54SBarry Smith   ierr = VecRestoreArray(x1_tmp,&xx);CHKERRQ(ierr);
2881f6d58c54SBarry Smith   ierr = PetscFree(srows);CHKERRQ(ierr);
2882f6d58c54SBarry Smith 
2883f6d58c54SBarry Smith   coloring->currentcolor = -1;
288426fbe8dcSKarl Rupp 
2885f6d58c54SBarry Smith   ierr = MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2886f6d58c54SBarry Smith   ierr = MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2887f6d58c54SBarry Smith   ierr = PetscLogEventEnd(MAT_FDColoringApply,coloring,J,x1,0);CHKERRQ(ierr);
2888f6d58c54SBarry Smith   PetscFunctionReturn(0);
2889f6d58c54SBarry Smith }
289099cafbc1SBarry Smith 
28912593348eSBarry Smith /* -------------------------------------------------------------------*/
2892be332245SKarl Rupp static struct _MatOps MatOps_Values = {
2893be332245SKarl Rupp         MatSetValues_SeqBAIJ,
2894cc2dc46cSBarry Smith         MatGetRow_SeqBAIJ,
2895cc2dc46cSBarry Smith         MatRestoreRow_SeqBAIJ,
2896cc2dc46cSBarry Smith         MatMult_SeqBAIJ_N,
289797304618SKris Buschelman /* 4*/  MatMultAdd_SeqBAIJ_N,
28987c922b88SBarry Smith         MatMultTranspose_SeqBAIJ,
28997c922b88SBarry Smith         MatMultTransposeAdd_SeqBAIJ,
2900db4efbfdSBarry Smith         0,
2901cc2dc46cSBarry Smith         0,
2902cc2dc46cSBarry Smith         0,
290397304618SKris Buschelman /* 10*/ 0,
2904cc2dc46cSBarry Smith         MatLUFactor_SeqBAIJ,
2905cc2dc46cSBarry Smith         0,
2906b6490206SBarry Smith         0,
2907f2501298SSatish Balay         MatTranspose_SeqBAIJ,
290897304618SKris Buschelman /* 15*/ MatGetInfo_SeqBAIJ,
2909cc2dc46cSBarry Smith         MatEqual_SeqBAIJ,
2910cc2dc46cSBarry Smith         MatGetDiagonal_SeqBAIJ,
2911cc2dc46cSBarry Smith         MatDiagonalScale_SeqBAIJ,
2912cc2dc46cSBarry Smith         MatNorm_SeqBAIJ,
291397304618SKris Buschelman /* 20*/ 0,
2914cc2dc46cSBarry Smith         MatAssemblyEnd_SeqBAIJ,
2915cc2dc46cSBarry Smith         MatSetOption_SeqBAIJ,
2916cc2dc46cSBarry Smith         MatZeroEntries_SeqBAIJ,
2917d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqBAIJ,
2918db4efbfdSBarry Smith         0,
2919db4efbfdSBarry Smith         0,
2920db4efbfdSBarry Smith         0,
2921db4efbfdSBarry Smith         0,
29224994cf47SJed Brown /* 29*/ MatSetUp_SeqBAIJ,
2923db4efbfdSBarry Smith         0,
2924db4efbfdSBarry Smith         0,
29258c778c55SBarry Smith         0,
29268c778c55SBarry Smith         0,
2927d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqBAIJ,
2928cc2dc46cSBarry Smith         0,
2929cc2dc46cSBarry Smith         0,
2930cc2dc46cSBarry Smith         MatILUFactor_SeqBAIJ,
2931cc2dc46cSBarry Smith         0,
2932d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqBAIJ,
2933cc2dc46cSBarry Smith         MatGetSubMatrices_SeqBAIJ,
2934cc2dc46cSBarry Smith         MatIncreaseOverlap_SeqBAIJ,
2935cc2dc46cSBarry Smith         MatGetValues_SeqBAIJ,
29363c896bc6SHong Zhang         MatCopy_SeqBAIJ,
2937d519adbfSMatthew Knepley /* 44*/ 0,
2938cc2dc46cSBarry Smith         MatScale_SeqBAIJ,
2939cc2dc46cSBarry Smith         0,
2940cc2dc46cSBarry Smith         0,
294197b48c8fSBarry Smith         MatZeroRowsColumns_SeqBAIJ,
2942f73d5cc4SBarry Smith /* 49*/ 0,
29433b2fbd54SBarry Smith         MatGetRowIJ_SeqBAIJ,
294492c4ed94SBarry Smith         MatRestoreRowIJ_SeqBAIJ,
29453acb8795SBarry Smith         MatGetColumnIJ_SeqBAIJ,
29463acb8795SBarry Smith         MatRestoreColumnIJ_SeqBAIJ,
29473acb8795SBarry Smith /* 54*/ MatFDColoringCreate_SeqAIJ,
2948cc2dc46cSBarry Smith         0,
2949cc2dc46cSBarry Smith         0,
2950cc2dc46cSBarry Smith         0,
2951d3825aa8SBarry Smith         MatSetValuesBlocked_SeqBAIJ,
2952d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_SeqBAIJ,
2953b9b97703SBarry Smith         MatDestroy_SeqBAIJ,
2954b9b97703SBarry Smith         MatView_SeqBAIJ,
2955357abbc8SBarry Smith         0,
2956273d9f13SBarry Smith         0,
2957d519adbfSMatthew Knepley /* 64*/ 0,
2958273d9f13SBarry Smith         0,
2959273d9f13SBarry Smith         0,
2960273d9f13SBarry Smith         0,
2961273d9f13SBarry Smith         0,
2962d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqBAIJ,
2963273d9f13SBarry Smith         0,
2964c87e5d42SMatthew Knepley         MatConvert_Basic,
296597304618SKris Buschelman         0,
296697304618SKris Buschelman         0,
2967d519adbfSMatthew Knepley /* 74*/ 0,
2968f6d58c54SBarry Smith         MatFDColoringApply_BAIJ,
296997304618SKris Buschelman         0,
297097304618SKris Buschelman         0,
297197304618SKris Buschelman         0,
2972d519adbfSMatthew Knepley /* 79*/ 0,
297397304618SKris Buschelman         0,
297497304618SKris Buschelman         0,
297597304618SKris Buschelman         0,
29765bba2384SShri Abhyankar         MatLoad_SeqBAIJ,
2977d519adbfSMatthew Knepley /* 84*/ 0,
2978b01c7715SBarry Smith         0,
2979b01c7715SBarry Smith         0,
2980b01c7715SBarry Smith         0,
2981865e5f61SKris Buschelman         0,
2982d519adbfSMatthew Knepley /* 89*/ 0,
2983865e5f61SKris Buschelman         0,
2984865e5f61SKris Buschelman         0,
2985865e5f61SKris Buschelman         0,
2986865e5f61SKris Buschelman         0,
2987d519adbfSMatthew Knepley /* 94*/ 0,
2988865e5f61SKris Buschelman         0,
2989865e5f61SKris Buschelman         0,
299099cafbc1SBarry Smith         0,
299199cafbc1SBarry Smith         0,
2992d519adbfSMatthew Knepley /* 99*/ 0,
299399cafbc1SBarry Smith         0,
299499cafbc1SBarry Smith         0,
299599cafbc1SBarry Smith         0,
299699cafbc1SBarry Smith         0,
2997d519adbfSMatthew Knepley /*104*/ 0,
299899cafbc1SBarry Smith         MatRealPart_SeqBAIJ,
29992af78befSBarry Smith         MatImaginaryPart_SeqBAIJ,
30002af78befSBarry Smith         0,
30012af78befSBarry Smith         0,
3002d519adbfSMatthew Knepley /*109*/ 0,
30032af78befSBarry Smith         0,
30042af78befSBarry Smith         0,
30052af78befSBarry Smith         0,
3006547795f9SHong Zhang         MatMissingDiagonal_SeqBAIJ,
3007547795f9SHong Zhang /*114*/ 0,
3008547795f9SHong Zhang         0,
3009547795f9SHong Zhang         0,
3010547795f9SHong Zhang         0,
3011547795f9SHong Zhang         0,
3012547795f9SHong Zhang /*119*/ 0,
3013547795f9SHong Zhang         0,
3014547795f9SHong Zhang         MatMultHermitianTranspose_SeqBAIJ,
3015d6037b41SHong Zhang         MatMultHermitianTransposeAdd_SeqBAIJ,
3016d6037b41SHong Zhang         0,
3017bbead8a2SBarry Smith /*124*/ 0,
3018bbead8a2SBarry Smith         0,
3019bbead8a2SBarry Smith         MatInvertBlockDiagonal_SeqBAIJ
302099cafbc1SBarry Smith };
30212593348eSBarry Smith 
30223e90b805SBarry Smith EXTERN_C_BEGIN
30234a2ae208SSatish Balay #undef __FUNCT__
30244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ"
30257087cfbeSBarry Smith PetscErrorCode  MatStoreValues_SeqBAIJ(Mat mat)
30263e90b805SBarry Smith {
30273e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
30288ece6314SShri Abhyankar   PetscInt       nz   = aij->i[aij->mbs]*aij->bs2;
3029dfbe8321SBarry Smith   PetscErrorCode ierr;
30303e90b805SBarry Smith 
30313e90b805SBarry Smith   PetscFunctionBegin;
3032e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
30333e90b805SBarry Smith 
30343e90b805SBarry Smith   /* allocate space for values if not already there */
30353e90b805SBarry Smith   if (!aij->saved_values) {
303687828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
30371784c0f5SBarry Smith     ierr = PetscLogObjectMemory(mat,(nz+1)*sizeof(PetscScalar));CHKERRQ(ierr);
30383e90b805SBarry Smith   }
30393e90b805SBarry Smith 
30403e90b805SBarry Smith   /* copy values over */
304187828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
30423e90b805SBarry Smith   PetscFunctionReturn(0);
30433e90b805SBarry Smith }
30443e90b805SBarry Smith EXTERN_C_END
30453e90b805SBarry Smith 
30463e90b805SBarry Smith EXTERN_C_BEGIN
30474a2ae208SSatish Balay #undef __FUNCT__
30484a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ"
30497087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_SeqBAIJ(Mat mat)
30503e90b805SBarry Smith {
30513e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
30526849ba73SBarry Smith   PetscErrorCode ierr;
30538ece6314SShri Abhyankar   PetscInt       nz = aij->i[aij->mbs]*aij->bs2;
30543e90b805SBarry Smith 
30553e90b805SBarry Smith   PetscFunctionBegin;
3056e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
3057e7e72b3dSBarry Smith   if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
30583e90b805SBarry Smith 
30593e90b805SBarry Smith   /* copy values over */
306087828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
30613e90b805SBarry Smith   PetscFunctionReturn(0);
30623e90b805SBarry Smith }
30633e90b805SBarry Smith EXTERN_C_END
30643e90b805SBarry Smith 
3065273d9f13SBarry Smith EXTERN_C_BEGIN
30667087cfbeSBarry Smith extern PetscErrorCode  MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
30677087cfbeSBarry Smith extern PetscErrorCode  MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
3068273d9f13SBarry Smith EXTERN_C_END
3069273d9f13SBarry Smith 
3070273d9f13SBarry Smith EXTERN_C_BEGIN
30714a2ae208SSatish Balay #undef __FUNCT__
3072a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ"
30737087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
3074a23d5eceSKris Buschelman {
3075a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
30766849ba73SBarry Smith   PetscErrorCode ierr;
3077535b19f3SBarry Smith   PetscInt       i,mbs,nbs,bs2;
30782576faa2SJed Brown   PetscBool      flg,skipallocation = PETSC_FALSE,realalloc = PETSC_FALSE;
3079a23d5eceSKris Buschelman 
3080a23d5eceSKris Buschelman   PetscFunctionBegin;
30812576faa2SJed Brown   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;
3082ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
3083ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
3084ab93d7beSBarry Smith     nz             = 0;
3085ab93d7beSBarry Smith   }
30868c07d4e3SBarry Smith 
308726283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
308826283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
308926283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
309026283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
3091e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
3092899cda47SBarry Smith 
3093899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
3094899cda47SBarry Smith 
3095d0f46423SBarry Smith   mbs = B->rmap->n/bs;
3096d0f46423SBarry Smith   nbs = B->cmap->n/bs;
3097a23d5eceSKris Buschelman   bs2 = bs*bs;
3098a23d5eceSKris Buschelman 
309965e19b50SBarry Smith   if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs);
3100a23d5eceSKris Buschelman 
3101a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
3102e32f2f54SBarry Smith   if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
3103a23d5eceSKris Buschelman   if (nnz) {
3104a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
3105e32f2f54SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
3106e32f2f54SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
3107a23d5eceSKris Buschelman     }
3108a23d5eceSKris Buschelman   }
3109a23d5eceSKris Buschelman 
3110a23d5eceSKris Buschelman   b    = (Mat_SeqBAIJ*)B->data;
3111ce94432eSBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
31120298fd71SBarry Smith   ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for block size (slow)",NULL,PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
31138c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
31148c07d4e3SBarry Smith 
3115a23d5eceSKris Buschelman   if (!flg) {
3116a23d5eceSKris Buschelman     switch (bs) {
3117a23d5eceSKris Buschelman     case 1:
3118a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_1;
3119a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_1;
312041f059aeSBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_1;
3121a23d5eceSKris Buschelman       break;
3122a23d5eceSKris Buschelman     case 2:
3123a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_2;
3124a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_2;
312541f059aeSBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_2;
3126a23d5eceSKris Buschelman       break;
3127a23d5eceSKris Buschelman     case 3:
3128a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_3;
3129a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_3;
313041f059aeSBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_3;
3131a23d5eceSKris Buschelman       break;
3132a23d5eceSKris Buschelman     case 4:
3133a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_4;
3134a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_4;
313541f059aeSBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_4;
3136a23d5eceSKris Buschelman       break;
3137a23d5eceSKris Buschelman     case 5:
3138a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_5;
3139a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_5;
314041f059aeSBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_5;
3141a23d5eceSKris Buschelman       break;
3142a23d5eceSKris Buschelman     case 6:
3143a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_6;
3144a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_6;
314541f059aeSBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_6;
3146a23d5eceSKris Buschelman       break;
3147a23d5eceSKris Buschelman     case 7:
3148a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_7;
3149a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_7;
315041f059aeSBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_7;
3151a23d5eceSKris Buschelman       break;
31528ab949d8SShri Abhyankar     case 15:
3153832cc040SShri Abhyankar       B->ops->mult    = MatMult_SeqBAIJ_15_ver1;
3154de80f912SBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
3155de80f912SBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_N;
31568ab949d8SShri Abhyankar       break;
3157a23d5eceSKris Buschelman     default:
3158a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_N;
3159a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
3160de80f912SBarry Smith       B->ops->sor     = MatSOR_SeqBAIJ_N;
3161a23d5eceSKris Buschelman       break;
3162a23d5eceSKris Buschelman     }
3163a23d5eceSKris Buschelman   }
3164a23d5eceSKris Buschelman   b->mbs = mbs;
3165a23d5eceSKris Buschelman   b->nbs = nbs;
3166ab93d7beSBarry Smith   if (!skipallocation) {
31672ee49352SLisandro Dalcin     if (!b->imax) {
3168ab93d7beSBarry Smith       ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
3169a2ea699eSBarry Smith       ierr = PetscLogObjectMemory(B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr);
317026fbe8dcSKarl Rupp 
31714fd072dbSBarry Smith       b->free_imax_ilen = PETSC_TRUE;
31722ee49352SLisandro Dalcin     }
3173ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
317426fbe8dcSKarl Rupp     for (i=0; i<mbs; i++) b->ilen[i] = 0;
3175a23d5eceSKris Buschelman     if (!nnz) {
3176a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
3177c62bd62aSJed Brown       else if (nz < 0) nz = 1;
3178a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
3179a23d5eceSKris Buschelman       nz = nz*mbs;
3180a23d5eceSKris Buschelman     } else {
3181a23d5eceSKris Buschelman       nz = 0;
3182a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
3183a23d5eceSKris Buschelman     }
3184a23d5eceSKris Buschelman 
3185a23d5eceSKris Buschelman     /* allocate the matrix space */
31862ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
3187d0f46423SBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap->N+1,PetscInt,&b->i);CHKERRQ(ierr);
3188d0f46423SBarry Smith     ierr = PetscLogObjectMemory(B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
3189a23d5eceSKris Buschelman     ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
3190c1ac3661SBarry Smith     ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
319126fbe8dcSKarl Rupp 
3192a23d5eceSKris Buschelman     b->singlemalloc = PETSC_TRUE;
3193a23d5eceSKris Buschelman     b->i[0]         = 0;
3194a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
3195a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
3196a23d5eceSKris Buschelman     }
3197e6b907acSBarry Smith     b->free_a  = PETSC_TRUE;
3198e6b907acSBarry Smith     b->free_ij = PETSC_TRUE;
3199e811da20SHong Zhang   } else {
3200e6b907acSBarry Smith     b->free_a  = PETSC_FALSE;
3201e6b907acSBarry Smith     b->free_ij = PETSC_FALSE;
3202ab93d7beSBarry Smith   }
3203a23d5eceSKris Buschelman 
3204a23d5eceSKris Buschelman   b->bs2              = bs2;
3205a23d5eceSKris Buschelman   b->mbs              = mbs;
3206a23d5eceSKris Buschelman   b->nz               = 0;
3207b32cb4a7SJed Brown   b->maxnz            = nz;
3208b32cb4a7SJed Brown   B->info.nz_unneeded = (PetscReal)b->maxnz*bs2;
32092576faa2SJed Brown   if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);}
3210a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3211a23d5eceSKris Buschelman }
3212a23d5eceSKris Buschelman EXTERN_C_END
3213a23d5eceSKris Buschelman 
3214b24902e0SBarry Smith EXTERN_C_BEGIN
3215725b52f3SLisandro Dalcin #undef __FUNCT__
3216725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ"
3217cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
3218725b52f3SLisandro Dalcin {
3219725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
3220725b52f3SLisandro Dalcin   PetscScalar    *values=0;
3221725b52f3SLisandro Dalcin   PetscErrorCode ierr;
3222725b52f3SLisandro Dalcin 
3223725b52f3SLisandro Dalcin   PetscFunctionBegin;
3224e32f2f54SBarry Smith   if (bs < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
322526283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
322626283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
322726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
322826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
3229e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
3230d0f46423SBarry Smith   m    = B->rmap->n/bs;
3231725b52f3SLisandro Dalcin 
323226fbe8dcSKarl Rupp   if (ii[0] != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]);
3233725b52f3SLisandro Dalcin   ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr);
3234725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
3235cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
323626fbe8dcSKarl Rupp     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz);
3237725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
3238725b52f3SLisandro Dalcin     nnz[i] = nz;
3239725b52f3SLisandro Dalcin   }
3240725b52f3SLisandro Dalcin   ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
3241725b52f3SLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
3242725b52f3SLisandro Dalcin 
3243725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
3244725b52f3SLisandro Dalcin   if (!values) {
3245725b52f3SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
3246725b52f3SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
3247725b52f3SLisandro Dalcin   }
3248725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
3249cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
3250cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
3251cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
3252725b52f3SLisandro Dalcin     ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
3253725b52f3SLisandro Dalcin   }
3254725b52f3SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
3255725b52f3SLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3256725b52f3SLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
32577827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
3258725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3259725b52f3SLisandro Dalcin }
3260725b52f3SLisandro Dalcin EXTERN_C_END
3261725b52f3SLisandro Dalcin 
3262725b52f3SLisandro Dalcin 
3263207126cbSBarry Smith EXTERN_C_BEGIN
32647087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*);
32652938c13dSDahai Guo extern PetscErrorCode  MatGetFactor_seqbaij_bstrm(Mat,MatFactorType,Mat*);
326667877ebaSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
32677087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*);
326867877ebaSShri Abhyankar #endif
32697087cfbeSBarry Smith extern PetscErrorCode  MatGetFactorAvailable_seqbaij_petsc(Mat,MatFactorType,Mat*);
3270b24902e0SBarry Smith EXTERN_C_END
3271b24902e0SBarry Smith 
32720bad9183SKris Buschelman /*MC
3273fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
32740bad9183SKris Buschelman    block sparse compressed row format.
32750bad9183SKris Buschelman 
32760bad9183SKris Buschelman    Options Database Keys:
32770bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
32780bad9183SKris Buschelman 
32790bad9183SKris Buschelman   Level: beginner
32800bad9183SKris Buschelman 
3281f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
32820bad9183SKris Buschelman M*/
32830bad9183SKris Buschelman 
3284c0cdd4a1SDahai Guo EXTERN_C_BEGIN
3285c0cdd4a1SDahai Guo extern PetscErrorCode  MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType,MatReuse,Mat*);
3286c0cdd4a1SDahai Guo EXTERN_C_END
3287b24902e0SBarry Smith 
3288a23d5eceSKris Buschelman EXTERN_C_BEGIN
3289a23d5eceSKris Buschelman #undef __FUNCT__
32904a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ"
32917087cfbeSBarry Smith PetscErrorCode  MatCreate_SeqBAIJ(Mat B)
32922593348eSBarry Smith {
3293dfbe8321SBarry Smith   PetscErrorCode ierr;
3294c1ac3661SBarry Smith   PetscMPIInt    size;
3295b6490206SBarry Smith   Mat_SeqBAIJ    *b;
32963b2fbd54SBarry Smith 
32973a40ed3dSBarry Smith   PetscFunctionBegin;
3298ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
3299e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
3300b6490206SBarry Smith 
330138f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr);
3302b0a32e0cSBarry Smith   B->data = (void*)b;
3303549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
330426fbe8dcSKarl Rupp 
33052593348eSBarry Smith   b->row          = 0;
33062593348eSBarry Smith   b->col          = 0;
3307e51c0b9cSSatish Balay   b->icol         = 0;
33082593348eSBarry Smith   b->reallocs     = 0;
33093e90b805SBarry Smith   b->saved_values = 0;
33102593348eSBarry Smith 
3311c4992f7dSBarry Smith   b->roworiented        = PETSC_TRUE;
33122593348eSBarry Smith   b->nonew              = 0;
33132593348eSBarry Smith   b->diag               = 0;
33142593348eSBarry Smith   b->solve_work         = 0;
3315de6a44a3SBarry Smith   b->mult_work          = 0;
33162a1b7f2aSHong Zhang   B->spptr              = 0;
3317b32cb4a7SJed Brown   B->info.nz_unneeded   = (PetscReal)b->maxnz*b->bs2;
3318a9817697SBarry Smith   b->keepnonzeropattern = PETSC_FALSE;
3319c4319e64SHong Zhang   b->xtoy               = 0;
3320c4319e64SHong Zhang   b->XtoY               = 0;
332188e51ccdSHong Zhang   B->same_nonzero       = PETSC_FALSE;
33224e220ebcSLois Curfman McInnes 
3323*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactorAvailable_petsc_C","MatGetFactorAvailable_seqbaij_petsc",MatGetFactorAvailable_seqbaij_petsc);CHKERRQ(ierr);
3324*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_petsc_C","MatGetFactor_seqbaij_petsc",MatGetFactor_seqbaij_petsc);CHKERRQ(ierr);
3325*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_bstrm_C","MatGetFactor_seqbaij_bstrm",MatGetFactor_seqbaij_bstrm);CHKERRQ(ierr);
332667877ebaSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
3327*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps", MatGetFactor_baij_mumps);CHKERRQ(ierr);
332867877ebaSShri Abhyankar #endif
3329*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatInvertBlockDiagonal_C","MatInvertBlockDiagonal_SeqBAIJ",MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
3330*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C","MatStoreValues_SeqBAIJ",MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
3331*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C","MatRetrieveValues_SeqBAIJ",MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
3332*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetColumnIndices_C","MatSeqBAIJSetColumnIndices_SeqBAIJ",MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
3333*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqaij_C","MatConvert_SeqBAIJ_SeqAIJ",MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
3334*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C","MatConvert_SeqBAIJ_SeqSBAIJ",MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
3335*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C","MatSeqBAIJSetPreallocation_SeqBAIJ",MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
3336*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C","MatSeqBAIJSetPreallocationCSR_SeqBAIJ",MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr);
3337*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqbstrm_C","MatConvert_SeqBAIJ_SeqBSTRM",MatConvert_SeqBAIJ_SeqBSTRM);CHKERRQ(ierr);
3338*00de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C","MatIsTranspose_SeqBAIJ",MatIsTranspose_SeqBAIJ);CHKERRQ(ierr);
333917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
33403a40ed3dSBarry Smith   PetscFunctionReturn(0);
33412593348eSBarry Smith }
3342273d9f13SBarry Smith EXTERN_C_END
33432593348eSBarry Smith 
33444a2ae208SSatish Balay #undef __FUNCT__
3345b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ"
3346ace3abfcSBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
33472593348eSBarry Smith {
3348b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
33496849ba73SBarry Smith   PetscErrorCode ierr;
3350a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
3351de6a44a3SBarry Smith 
33523a40ed3dSBarry Smith   PetscFunctionBegin;
3353e32f2f54SBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix");
33542593348eSBarry Smith 
33554fd072dbSBarry Smith   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
33564fd072dbSBarry Smith     c->imax           = a->imax;
33574fd072dbSBarry Smith     c->ilen           = a->ilen;
33584fd072dbSBarry Smith     c->free_imax_ilen = PETSC_FALSE;
33594fd072dbSBarry Smith   } else {
336033b91e9fSSatish Balay     ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr);
33614fd072dbSBarry Smith     ierr = PetscLogObjectMemory(C,2*mbs*sizeof(PetscInt));CHKERRQ(ierr);
3362b6490206SBarry Smith     for (i=0; i<mbs; i++) {
33632593348eSBarry Smith       c->imax[i] = a->imax[i];
33642593348eSBarry Smith       c->ilen[i] = a->ilen[i];
33652593348eSBarry Smith     }
33664fd072dbSBarry Smith     c->free_imax_ilen = PETSC_TRUE;
33674fd072dbSBarry Smith   }
33682593348eSBarry Smith 
33692593348eSBarry Smith   /* allocate the matrix space */
337016a2bf60SHong Zhang   if (mallocmatspace) {
33714fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
33724fd072dbSBarry Smith       ierr = PetscMalloc(bs2*nz*sizeof(PetscScalar),&c->a);CHKERRQ(ierr);
33734fd072dbSBarry Smith       ierr = PetscLogObjectMemory(C,a->i[mbs]*bs2*sizeof(PetscScalar));CHKERRQ(ierr);
3374379be0ddSLisandro Dalcin       ierr = PetscMemzero(c->a,bs2*nz*sizeof(PetscScalar));CHKERRQ(ierr);
337526fbe8dcSKarl Rupp 
33764fd072dbSBarry Smith       c->i            = a->i;
33774fd072dbSBarry Smith       c->j            = a->j;
3378379be0ddSLisandro Dalcin       c->singlemalloc = PETSC_FALSE;
3379379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
3380379be0ddSLisandro Dalcin       c->free_ij      = PETSC_FALSE;
33814fd072dbSBarry Smith       c->parent       = A;
33821e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
33831e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
338426fbe8dcSKarl Rupp 
33854fd072dbSBarry Smith       ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr);
33864fd072dbSBarry Smith       ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
33874fd072dbSBarry Smith       ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
33884fd072dbSBarry Smith     } else {
3389a96a251dSBarry Smith       ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
339016a2bf60SHong Zhang       ierr = PetscLogObjectMemory(C,a->i[mbs]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
339126fbe8dcSKarl Rupp 
3392c4992f7dSBarry Smith       c->singlemalloc = PETSC_TRUE;
3393379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
33944fd072dbSBarry Smith       c->free_ij      = PETSC_TRUE;
339526fbe8dcSKarl Rupp 
3396c1ac3661SBarry Smith       ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
3397b6490206SBarry Smith       if (mbs > 0) {
3398c1ac3661SBarry Smith         ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
33992e8a6d31SBarry Smith         if (cpvalues == MAT_COPY_VALUES) {
3400549d3d68SSatish Balay           ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
34012e8a6d31SBarry Smith         } else {
3402549d3d68SSatish Balay           ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
34032593348eSBarry Smith         }
34042593348eSBarry Smith       }
34051e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
34061e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
340716a2bf60SHong Zhang     }
34084fd072dbSBarry Smith   }
340916a2bf60SHong Zhang 
34102593348eSBarry Smith   c->roworiented = a->roworiented;
34112593348eSBarry Smith   c->nonew       = a->nonew;
341226fbe8dcSKarl Rupp 
34131e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
34141e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
341526fbe8dcSKarl Rupp 
34165c9eb25fSBarry Smith   c->bs2         = a->bs2;
34175c9eb25fSBarry Smith   c->mbs         = a->mbs;
34185c9eb25fSBarry Smith   c->nbs         = a->nbs;
34192593348eSBarry Smith 
34202593348eSBarry Smith   if (a->diag) {
34214fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
34224fd072dbSBarry Smith       c->diag      = a->diag;
34234fd072dbSBarry Smith       c->free_diag = PETSC_FALSE;
34244fd072dbSBarry Smith     } else {
3425c1ac3661SBarry Smith       ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
342652e6d16bSBarry Smith       ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
342726fbe8dcSKarl Rupp       for (i=0; i<mbs; i++) c->diag[i] = a->diag[i];
34284fd072dbSBarry Smith       c->free_diag = PETSC_TRUE;
34294fd072dbSBarry Smith     }
343098305bb5SBarry Smith   } else c->diag = 0;
343126fbe8dcSKarl Rupp 
34322593348eSBarry Smith   c->nz         = a->nz;
3433f2cbd3d5SJed Brown   c->maxnz      = a->nz;         /* Since we allocate exactly the right amount */
34342593348eSBarry Smith   c->solve_work = 0;
34357fc0212eSBarry Smith   c->mult_work  = 0;
343688e51ccdSHong Zhang 
343788e51ccdSHong Zhang   c->compressedrow.use   = a->compressedrow.use;
343888e51ccdSHong Zhang   c->compressedrow.nrows = a->compressedrow.nrows;
3439cd6b891eSBarry Smith   c->compressedrow.check = a->compressedrow.check;
3440cd6b891eSBarry Smith   if (a->compressedrow.use) {
344188e51ccdSHong Zhang     i    = a->compressedrow.nrows;
34420e83c824SBarry Smith     ierr = PetscMalloc2(i+1,PetscInt,&c->compressedrow.i,i+1,PetscInt,&c->compressedrow.rindex);CHKERRQ(ierr);
34434fd072dbSBarry Smith     ierr = PetscLogObjectMemory(C,(2*i+1)*sizeof(PetscInt));CHKERRQ(ierr);
344488e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr);
344588e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr);
344688e51ccdSHong Zhang   } else {
344788e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
34480298fd71SBarry Smith     c->compressedrow.i      = NULL;
34490298fd71SBarry Smith     c->compressedrow.rindex = NULL;
345088e51ccdSHong Zhang   }
345188e51ccdSHong Zhang   C->same_nonzero = A->same_nonzero;
345226fbe8dcSKarl Rupp 
3453140e18c1SBarry Smith   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
34545d5aaa0eSBarry Smith   ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
34553a40ed3dSBarry Smith   PetscFunctionReturn(0);
34562593348eSBarry Smith }
34572593348eSBarry Smith 
34584a2ae208SSatish Balay #undef __FUNCT__
3459b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ"
3460b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
3461b24902e0SBarry Smith {
3462b24902e0SBarry Smith   PetscErrorCode ierr;
3463b24902e0SBarry Smith 
3464b24902e0SBarry Smith   PetscFunctionBegin;
3465ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
3466d0f46423SBarry Smith   ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr);
34675c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
346898ad0f72SJed Brown   ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
3469b24902e0SBarry Smith   PetscFunctionReturn(0);
3470b24902e0SBarry Smith }
3471b24902e0SBarry Smith 
3472b24902e0SBarry Smith #undef __FUNCT__
34735bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqBAIJ"
3474112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqBAIJ(Mat newmat,PetscViewer viewer)
3475f501eaabSShri Abhyankar {
3476f501eaabSShri Abhyankar   Mat_SeqBAIJ    *a;
3477f501eaabSShri Abhyankar   PetscErrorCode ierr;
3478f501eaabSShri Abhyankar   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
3479f501eaabSShri Abhyankar   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
3480f501eaabSShri Abhyankar   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols;
3481f501eaabSShri Abhyankar   PetscInt       *masked,nmask,tmp,bs2,ishift;
3482f501eaabSShri Abhyankar   PetscMPIInt    size;
3483f501eaabSShri Abhyankar   int            fd;
3484f501eaabSShri Abhyankar   PetscScalar    *aa;
3485ce94432eSBarry Smith   MPI_Comm       comm;
3486f501eaabSShri Abhyankar 
3487f501eaabSShri Abhyankar   PetscFunctionBegin;
3488ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
34890298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
34900298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
3491f501eaabSShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
3492f501eaabSShri Abhyankar   bs2  = bs*bs;
3493f501eaabSShri Abhyankar 
3494f501eaabSShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3495f501eaabSShri Abhyankar   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor");
3496f501eaabSShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
3497f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
3498f501eaabSShri Abhyankar   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
3499f501eaabSShri Abhyankar   M = header[1]; N = header[2]; nz = header[3];
3500f501eaabSShri Abhyankar 
3501f501eaabSShri Abhyankar   if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
3502f501eaabSShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
3503f501eaabSShri Abhyankar 
3504f501eaabSShri Abhyankar   /*
3505f501eaabSShri Abhyankar      This code adds extra rows to make sure the number of rows is
3506f501eaabSShri Abhyankar     divisible by the blocksize
3507f501eaabSShri Abhyankar   */
3508f501eaabSShri Abhyankar   mbs        = M/bs;
3509f501eaabSShri Abhyankar   extra_rows = bs - M + bs*(mbs);
3510f501eaabSShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
3511f501eaabSShri Abhyankar   else mbs++;
3512f501eaabSShri Abhyankar   if (extra_rows) {
3513f501eaabSShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
3514f501eaabSShri Abhyankar   }
3515f501eaabSShri Abhyankar 
3516f501eaabSShri Abhyankar   /* Set global sizes if not already set */
3517f501eaabSShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) {
3518f501eaabSShri Abhyankar     ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
3519f501eaabSShri Abhyankar   } else { /* Check if the matrix global sizes are correct */
3520f501eaabSShri Abhyankar     ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr);
35214c5b953cSHong Zhang     if (rows < 0 && cols < 0) { /* user might provide local size instead of global size */
35224c5b953cSHong Zhang       ierr = MatGetLocalSize(newmat,&rows,&cols);CHKERRQ(ierr);
35234c5b953cSHong Zhang     }
3524f501eaabSShri Abhyankar     if (M != rows ||  N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
3525f501eaabSShri Abhyankar   }
3526f501eaabSShri Abhyankar 
3527f501eaabSShri Abhyankar   /* read in row lengths */
3528f501eaabSShri Abhyankar   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
3529f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
3530f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
3531f501eaabSShri Abhyankar 
3532f501eaabSShri Abhyankar   /* read in column indices */
3533f501eaabSShri Abhyankar   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
3534f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
3535f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
3536f501eaabSShri Abhyankar 
3537f501eaabSShri Abhyankar   /* loop over row lengths determining block row lengths */
3538f501eaabSShri Abhyankar   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr);
3539f501eaabSShri Abhyankar   ierr     = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
3540f501eaabSShri Abhyankar   ierr     = PetscMalloc2(mbs,PetscInt,&mask,mbs,PetscInt,&masked);CHKERRQ(ierr);
3541f501eaabSShri Abhyankar   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
3542f501eaabSShri Abhyankar   rowcount = 0;
3543f501eaabSShri Abhyankar   nzcount  = 0;
3544f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) {
3545f501eaabSShri Abhyankar     nmask = 0;
3546f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3547f501eaabSShri Abhyankar       kmax = rowlengths[rowcount];
3548f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3549f501eaabSShri Abhyankar         tmp = jj[nzcount++]/bs;
3550f501eaabSShri Abhyankar         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
3551f501eaabSShri Abhyankar       }
3552f501eaabSShri Abhyankar       rowcount++;
3553f501eaabSShri Abhyankar     }
3554f501eaabSShri Abhyankar     browlengths[i] += nmask;
3555f501eaabSShri Abhyankar     /* zero out the mask elements we set */
3556f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3557f501eaabSShri Abhyankar   }
3558f501eaabSShri Abhyankar 
35592f480046SShri Abhyankar   /* Do preallocation  */
3560f501eaabSShri Abhyankar   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(newmat,bs,0,browlengths);CHKERRQ(ierr);
3561f501eaabSShri Abhyankar   a    = (Mat_SeqBAIJ*)newmat->data;
3562f501eaabSShri Abhyankar 
3563f501eaabSShri Abhyankar   /* set matrix "i" values */
3564f501eaabSShri Abhyankar   a->i[0] = 0;
3565f501eaabSShri Abhyankar   for (i=1; i<= mbs; i++) {
3566f501eaabSShri Abhyankar     a->i[i]      = a->i[i-1] + browlengths[i-1];
3567f501eaabSShri Abhyankar     a->ilen[i-1] = browlengths[i-1];
3568f501eaabSShri Abhyankar   }
3569f501eaabSShri Abhyankar   a->nz = 0;
3570f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) a->nz += browlengths[i];
3571f501eaabSShri Abhyankar 
3572f501eaabSShri Abhyankar   /* read in nonzero values */
3573f501eaabSShri Abhyankar   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
3574f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
3575f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
3576f501eaabSShri Abhyankar 
3577f501eaabSShri Abhyankar   /* set "a" and "j" values into matrix */
3578f501eaabSShri Abhyankar   nzcount = 0; jcount = 0;
3579f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) {
3580f501eaabSShri Abhyankar     nzcountb = nzcount;
3581f501eaabSShri Abhyankar     nmask    = 0;
3582f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3583f501eaabSShri Abhyankar       kmax = rowlengths[i*bs+j];
3584f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3585f501eaabSShri Abhyankar         tmp = jj[nzcount++]/bs;
3586f501eaabSShri Abhyankar         if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
3587f501eaabSShri Abhyankar       }
3588f501eaabSShri Abhyankar     }
3589f501eaabSShri Abhyankar     /* sort the masked values */
3590f501eaabSShri Abhyankar     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3591f501eaabSShri Abhyankar 
3592f501eaabSShri Abhyankar     /* set "j" values into matrix */
3593f501eaabSShri Abhyankar     maskcount = 1;
3594f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) {
3595f501eaabSShri Abhyankar       a->j[jcount++]  = masked[j];
3596f501eaabSShri Abhyankar       mask[masked[j]] = maskcount++;
3597f501eaabSShri Abhyankar     }
3598f501eaabSShri Abhyankar     /* set "a" values into matrix */
3599f501eaabSShri Abhyankar     ishift = bs2*a->i[i];
3600f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3601f501eaabSShri Abhyankar       kmax = rowlengths[i*bs+j];
3602f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3603f501eaabSShri Abhyankar         tmp       = jj[nzcountb]/bs;
3604f501eaabSShri Abhyankar         block     = mask[tmp] - 1;
3605f501eaabSShri Abhyankar         point     = jj[nzcountb] - bs*tmp;
3606f501eaabSShri Abhyankar         idx       = ishift + bs2*block + j + bs*point;
3607f501eaabSShri Abhyankar         a->a[idx] = (MatScalar)aa[nzcountb++];
3608f501eaabSShri Abhyankar       }
3609f501eaabSShri Abhyankar     }
3610f501eaabSShri Abhyankar     /* zero out the mask elements we set */
3611f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3612f501eaabSShri Abhyankar   }
3613f501eaabSShri Abhyankar   if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3614f501eaabSShri Abhyankar 
3615f501eaabSShri Abhyankar   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3616f501eaabSShri Abhyankar   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3617f501eaabSShri Abhyankar   ierr = PetscFree(aa);CHKERRQ(ierr);
3618f501eaabSShri Abhyankar   ierr = PetscFree(jj);CHKERRQ(ierr);
3619f501eaabSShri Abhyankar   ierr = PetscFree2(mask,masked);CHKERRQ(ierr);
3620f501eaabSShri Abhyankar 
3621f501eaabSShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3622f501eaabSShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3623f501eaabSShri Abhyankar   PetscFunctionReturn(0);
3624f501eaabSShri Abhyankar }
3625f501eaabSShri Abhyankar 
3626f501eaabSShri Abhyankar #undef __FUNCT__
36274a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ"
3628273d9f13SBarry Smith /*@C
3629273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3630273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3631273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3632273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3633273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
36342593348eSBarry Smith 
3635273d9f13SBarry Smith    Collective on MPI_Comm
3636273d9f13SBarry Smith 
3637273d9f13SBarry Smith    Input Parameters:
3638273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3639273d9f13SBarry Smith .  bs - size of block
3640273d9f13SBarry Smith .  m - number of rows
3641273d9f13SBarry Smith .  n - number of columns
364235d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
364335d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
36440298fd71SBarry Smith          (possibly different for each block row) or NULL
3645273d9f13SBarry Smith 
3646273d9f13SBarry Smith    Output Parameter:
3647273d9f13SBarry Smith .  A - the matrix
3648273d9f13SBarry Smith 
3649175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3650ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3651175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3652175b88e8SBarry Smith 
3653273d9f13SBarry Smith    Options Database Keys:
3654273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3655273d9f13SBarry Smith                      block calculations (much slower)
3656273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3657273d9f13SBarry Smith 
3658273d9f13SBarry Smith    Level: intermediate
3659273d9f13SBarry Smith 
3660273d9f13SBarry Smith    Notes:
3661d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3662d1be2dadSMatthew Knepley 
366349a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
366449a6f317SBarry Smith 
366535d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
366635d8aa7fSBarry Smith 
3667273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3668273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3669273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3670273d9f13SBarry Smith 
3671273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
36720298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
36730598bfebSBarry Smith    allocation.  See the <A href="../../docs/manual.pdf#nameddest=ch_mat">Mat chapter of the users manual</A> for details.
3674273d9f13SBarry Smith    matrices.
3675273d9f13SBarry Smith 
367669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ()
3677273d9f13SBarry Smith @*/
36787087cfbeSBarry Smith PetscErrorCode  MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3679273d9f13SBarry Smith {
3680dfbe8321SBarry Smith   PetscErrorCode ierr;
3681273d9f13SBarry Smith 
3682273d9f13SBarry Smith   PetscFunctionBegin;
3683f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3684f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3685273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3686ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3687273d9f13SBarry Smith   PetscFunctionReturn(0);
3688273d9f13SBarry Smith }
3689273d9f13SBarry Smith 
36904a2ae208SSatish Balay #undef __FUNCT__
36914a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation"
3692273d9f13SBarry Smith /*@C
3693273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3694273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3695273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3696273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3697273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3698273d9f13SBarry Smith 
3699273d9f13SBarry Smith    Collective on MPI_Comm
3700273d9f13SBarry Smith 
3701273d9f13SBarry Smith    Input Parameters:
3702273d9f13SBarry Smith +  A - the matrix
3703273d9f13SBarry Smith .  bs - size of block
3704273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3705273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
37060298fd71SBarry Smith          (possibly different for each block row) or NULL
3707273d9f13SBarry Smith 
3708273d9f13SBarry Smith    Options Database Keys:
3709273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3710273d9f13SBarry Smith                      block calculations (much slower)
3711273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3712273d9f13SBarry Smith 
3713273d9f13SBarry Smith    Level: intermediate
3714273d9f13SBarry Smith 
3715273d9f13SBarry Smith    Notes:
371649a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
371749a6f317SBarry Smith 
3718aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3719aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3720aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3721aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3722aa95bbe8SBarry Smith 
3723273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3724273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3725273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3726273d9f13SBarry Smith 
3727273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
37280298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
37290598bfebSBarry Smith    allocation.  See the <A href="../../docs/manual.pdf#nameddest=ch_mat">Mat chapter of the users manual</A> for details.
3730273d9f13SBarry Smith 
373169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ(), MatGetInfo()
3732273d9f13SBarry Smith @*/
37337087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3734273d9f13SBarry Smith {
37354ac538c5SBarry Smith   PetscErrorCode ierr;
3736273d9f13SBarry Smith 
3737273d9f13SBarry Smith   PetscFunctionBegin;
37386ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
37396ba663aaSJed Brown   PetscValidType(B,1);
37406ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
37414ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr);
3742273d9f13SBarry Smith   PetscFunctionReturn(0);
3743273d9f13SBarry Smith }
3744a1d92eedSBarry Smith 
3745c75a6043SHong Zhang #undef __FUNCT__
3746725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR"
3747725b52f3SLisandro Dalcin /*@C
3748725b52f3SLisandro Dalcin    MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format
3749725b52f3SLisandro Dalcin    (the default sequential PETSc format).
3750725b52f3SLisandro Dalcin 
3751725b52f3SLisandro Dalcin    Collective on MPI_Comm
3752725b52f3SLisandro Dalcin 
3753725b52f3SLisandro Dalcin    Input Parameters:
3754725b52f3SLisandro Dalcin +  A - the matrix
3755725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3756725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3757725b52f3SLisandro Dalcin -  v - optional values in the matrix
3758725b52f3SLisandro Dalcin 
3759725b52f3SLisandro Dalcin    Level: developer
3760725b52f3SLisandro Dalcin 
3761725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse
3762725b52f3SLisandro Dalcin 
3763725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3764725b52f3SLisandro Dalcin @*/
37657087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3766725b52f3SLisandro Dalcin {
37674ac538c5SBarry Smith   PetscErrorCode ierr;
3768725b52f3SLisandro Dalcin 
3769725b52f3SLisandro Dalcin   PetscFunctionBegin;
37706ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
37716ba663aaSJed Brown   PetscValidType(B,1);
37726ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
37734ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3774725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3775725b52f3SLisandro Dalcin }
3776725b52f3SLisandro Dalcin 
3777725b52f3SLisandro Dalcin 
3778725b52f3SLisandro Dalcin #undef __FUNCT__
3779c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays"
3780c75a6043SHong Zhang /*@
3781dfb205c3SBarry Smith      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements provided by the user.
3782c75a6043SHong Zhang 
3783c75a6043SHong Zhang      Collective on MPI_Comm
3784c75a6043SHong Zhang 
3785c75a6043SHong Zhang    Input Parameters:
3786c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3787c75a6043SHong Zhang .  bs - size of block
3788c75a6043SHong Zhang .  m - number of rows
3789c75a6043SHong Zhang .  n - number of columns
3790c75a6043SHong Zhang .  i - row indices
3791c75a6043SHong Zhang .  j - column indices
3792c75a6043SHong Zhang -  a - matrix values
3793c75a6043SHong Zhang 
3794c75a6043SHong Zhang    Output Parameter:
3795c75a6043SHong Zhang .  mat - the matrix
3796c75a6043SHong Zhang 
3797dfb205c3SBarry Smith    Level: advanced
3798c75a6043SHong Zhang 
3799c75a6043SHong Zhang    Notes:
3800c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3801c75a6043SHong Zhang     once the matrix is destroyed
3802c75a6043SHong Zhang 
3803c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3804c75a6043SHong Zhang 
3805c75a6043SHong Zhang        The i and j indices are 0 based
3806c75a6043SHong Zhang 
3807dfb205c3SBarry Smith        When block size is greater than 1 the matrix values must be stored using the BAIJ storage format (see the BAIJ code to determine this).
3808dfb205c3SBarry Smith 
3809dfb205c3SBarry Smith 
381069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateBAIJ(), MatCreateSeqBAIJ()
3811c75a6043SHong Zhang 
3812c75a6043SHong Zhang @*/
38137087cfbeSBarry Smith PetscErrorCode  MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat)
3814c75a6043SHong Zhang {
3815c75a6043SHong Zhang   PetscErrorCode ierr;
3816c75a6043SHong Zhang   PetscInt       ii;
3817c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3818c75a6043SHong Zhang 
3819c75a6043SHong Zhang   PetscFunctionBegin;
3820e32f2f54SBarry Smith   if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
3821e32f2f54SBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3822c75a6043SHong Zhang 
3823c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3824c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3825c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3826c75a6043SHong Zhang   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3827c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3828c75a6043SHong Zhang   ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr);
38291784c0f5SBarry Smith   ierr = PetscLogObjectMemory(*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr);
3830c75a6043SHong Zhang 
3831c75a6043SHong Zhang   baij->i = i;
3832c75a6043SHong Zhang   baij->j = j;
3833c75a6043SHong Zhang   baij->a = a;
383426fbe8dcSKarl Rupp 
3835c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3836c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3837e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3838e6b907acSBarry Smith   baij->free_ij      = PETSC_FALSE;
3839c75a6043SHong Zhang 
3840c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3841c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3842c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3843e32f2f54SBarry Smith     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3844c75a6043SHong Zhang #endif
3845c75a6043SHong Zhang   }
3846c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3847c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3848e32f2f54SBarry Smith     if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3849e32f2f54SBarry Smith     if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3850c75a6043SHong Zhang   }
3851c75a6043SHong Zhang #endif
3852c75a6043SHong Zhang 
3853c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3854c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3855c75a6043SHong Zhang   PetscFunctionReturn(0);
3856c75a6043SHong Zhang }
3857