xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 2b36279985d181bf1ae28d424577ae2c2fbebdf4)
12593348eSBarry Smith #ifndef lint
2*2b362799SSatish Balay static char vcid[] = "$Id: baij.c,v 1.95 1997/03/26 01:36:13 bsmith Exp balay $";
32593348eSBarry Smith #endif
42593348eSBarry Smith 
52593348eSBarry Smith /*
6b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
72593348eSBarry Smith   matrix storage format.
82593348eSBarry Smith */
93369ce9aSBarry Smith 
103369ce9aSBarry Smith #include "pinclude/pviewer.h"
113369ce9aSBarry Smith #include "sys.h"
1270f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h"
131a6a6d98SBarry Smith #include "src/vec/vecimpl.h"
141a6a6d98SBarry Smith #include "src/inline/spops.h"
152593348eSBarry Smith #include "petsc.h"
163b547af2SSatish Balay 
172593348eSBarry Smith 
18de6a44a3SBarry Smith /*
19de6a44a3SBarry Smith      Adds diagonal pointers to sparse matrix structure.
20de6a44a3SBarry Smith */
21de6a44a3SBarry Smith 
225615d1e5SSatish Balay #undef __FUNC__
235615d1e5SSatish Balay #define __FUNC__ "MatMarkDiag_SeqBAIJ"
24de6a44a3SBarry Smith int MatMarkDiag_SeqBAIJ(Mat A)
25de6a44a3SBarry Smith {
26de6a44a3SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
277fc0212eSBarry Smith   int         i,j, *diag, m = a->mbs;
28de6a44a3SBarry Smith 
29de6a44a3SBarry Smith   diag = (int *) PetscMalloc( (m+1)*sizeof(int)); CHKPTRQ(diag);
30de6a44a3SBarry Smith   PLogObjectMemory(A,(m+1)*sizeof(int));
317fc0212eSBarry Smith   for ( i=0; i<m; i++ ) {
32de6a44a3SBarry Smith     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
33de6a44a3SBarry Smith       if (a->j[j] == i) {
34de6a44a3SBarry Smith         diag[i] = j;
35de6a44a3SBarry Smith         break;
36de6a44a3SBarry Smith       }
37de6a44a3SBarry Smith     }
38de6a44a3SBarry Smith   }
39de6a44a3SBarry Smith   a->diag = diag;
40de6a44a3SBarry Smith   return 0;
41de6a44a3SBarry Smith }
422593348eSBarry Smith 
432593348eSBarry Smith 
443b2fbd54SBarry Smith extern int MatToSymmetricIJ_SeqAIJ(int,int*,int*,int,int,int**,int**);
453b2fbd54SBarry Smith 
465615d1e5SSatish Balay #undef __FUNC__
475615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_SeqBAIJ"
483b2fbd54SBarry Smith static int MatGetRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
493b2fbd54SBarry Smith                             PetscTruth *done)
503b2fbd54SBarry Smith {
513b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
523b2fbd54SBarry Smith   int         ierr, n = a->mbs,i;
533b2fbd54SBarry Smith 
543b2fbd54SBarry Smith   *nn = n;
553b2fbd54SBarry Smith   if (!ia) return 0;
563b2fbd54SBarry Smith   if (symmetric) {
573b2fbd54SBarry Smith     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,oshift,ia,ja);CHKERRQ(ierr);
583b2fbd54SBarry Smith   } else if (oshift == 1) {
593b2fbd54SBarry Smith     /* temporarily add 1 to i and j indices */
603b2fbd54SBarry Smith     int nz = a->i[n] + 1;
613b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]++;
623b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]++;
633b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
643b2fbd54SBarry Smith   } else {
653b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
663b2fbd54SBarry Smith   }
673b2fbd54SBarry Smith 
683b2fbd54SBarry Smith   return 0;
693b2fbd54SBarry Smith }
703b2fbd54SBarry Smith 
715615d1e5SSatish Balay #undef __FUNC__
725eea60f9SBarry Smith #define __FUNC__ "MatRestoreRowIJ_SeqBAIJ" /* ADIC Ignore */
733b2fbd54SBarry Smith static int MatRestoreRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
743b2fbd54SBarry Smith                                 PetscTruth *done)
753b2fbd54SBarry Smith {
763b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
773b2fbd54SBarry Smith   int         i,n = a->mbs;
783b2fbd54SBarry Smith 
793b2fbd54SBarry Smith   if (!ia) return 0;
803b2fbd54SBarry Smith   if (symmetric) {
813b2fbd54SBarry Smith     PetscFree(*ia);
823b2fbd54SBarry Smith     PetscFree(*ja);
83af5da2bfSBarry Smith   } else if (oshift == 1) {
843b2fbd54SBarry Smith     int nz = a->i[n];
853b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]--;
863b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]--;
873b2fbd54SBarry Smith   }
883b2fbd54SBarry Smith   return 0;
893b2fbd54SBarry Smith }
903b2fbd54SBarry Smith 
913b2fbd54SBarry Smith 
925615d1e5SSatish Balay #undef __FUNC__
935eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Binary" /* ADIC Ignore */
94b6490206SBarry Smith static int MatView_SeqBAIJ_Binary(Mat A,Viewer viewer)
952593348eSBarry Smith {
96b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
979df24120SSatish Balay   int         i, fd, *col_lens, ierr, bs = a->bs,count,*jj,j,k,l,bs2=a->bs2;
98b6490206SBarry Smith   Scalar      *aa;
992593348eSBarry Smith 
10090ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
1012593348eSBarry Smith   col_lens = (int *) PetscMalloc((4+a->m)*sizeof(int));CHKPTRQ(col_lens);
1022593348eSBarry Smith   col_lens[0] = MAT_COOKIE;
1033b2fbd54SBarry Smith 
1042593348eSBarry Smith   col_lens[1] = a->m;
1052593348eSBarry Smith   col_lens[2] = a->n;
1067e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
1072593348eSBarry Smith 
1082593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
109b6490206SBarry Smith   count = 0;
110b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
111b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
112b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
113b6490206SBarry Smith     }
1142593348eSBarry Smith   }
11577c4ece6SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+a->m,BINARY_INT,1); CHKERRQ(ierr);
1162593348eSBarry Smith   PetscFree(col_lens);
1172593348eSBarry Smith 
1182593348eSBarry Smith   /* store column indices (zero start index) */
1197e67e3f9SSatish Balay   jj = (int *) PetscMalloc( a->nz*bs2*sizeof(int) ); CHKPTRQ(jj);
120b6490206SBarry Smith   count = 0;
121b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
122b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
123b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
124b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
125b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
1262593348eSBarry Smith         }
1272593348eSBarry Smith       }
128b6490206SBarry Smith     }
129b6490206SBarry Smith   }
1307e67e3f9SSatish Balay   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,BINARY_INT,0); CHKERRQ(ierr);
131b6490206SBarry Smith   PetscFree(jj);
1322593348eSBarry Smith 
1332593348eSBarry Smith   /* store nonzero values */
1347e67e3f9SSatish Balay   aa = (Scalar *) PetscMalloc(a->nz*bs2*sizeof(Scalar)); CHKPTRQ(aa);
135b6490206SBarry Smith   count = 0;
136b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
137b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
138b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
139b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
1407e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
141b6490206SBarry Smith         }
142b6490206SBarry Smith       }
143b6490206SBarry Smith     }
144b6490206SBarry Smith   }
1457e67e3f9SSatish Balay   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,BINARY_SCALAR,0); CHKERRQ(ierr);
146b6490206SBarry Smith   PetscFree(aa);
1472593348eSBarry Smith   return 0;
1482593348eSBarry Smith }
1492593348eSBarry Smith 
1505615d1e5SSatish Balay #undef __FUNC__
1515eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_ASCII" /* ADIC Ignore */
152b6490206SBarry Smith static int MatView_SeqBAIJ_ASCII(Mat A,Viewer viewer)
1532593348eSBarry Smith {
154b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
1559df24120SSatish Balay   int         ierr, i,j,format,bs = a->bs,k,l,bs2=a->bs2;
1562593348eSBarry Smith   FILE        *fd;
1572593348eSBarry Smith   char        *outputname;
1582593348eSBarry Smith 
15990ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
1602593348eSBarry Smith   ierr = ViewerFileGetOutputname_Private(viewer,&outputname);CHKERRQ(ierr);
16190ace30eSBarry Smith   ierr = ViewerGetFormat(viewer,&format);
162639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO || format == VIEWER_FORMAT_ASCII_INFO_LONG) {
1637ddc982cSLois Curfman McInnes     fprintf(fd,"  block size is %d\n",bs);
1642593348eSBarry Smith   }
165639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_MATLAB) {
166e3372554SBarry Smith     SETERRQ(1,0,"Matlab format not supported");
1672593348eSBarry Smith   }
168639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_COMMON) {
16944cd7ae7SLois Curfman McInnes     for ( i=0; i<a->mbs; i++ ) {
17044cd7ae7SLois Curfman McInnes       for ( j=0; j<bs; j++ ) {
17144cd7ae7SLois Curfman McInnes         fprintf(fd,"row %d:",i*bs+j);
17244cd7ae7SLois Curfman McInnes         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
17344cd7ae7SLois Curfman McInnes           for ( l=0; l<bs; l++ ) {
17444cd7ae7SLois Curfman McInnes #if defined(PETSC_COMPLEX)
17544cd7ae7SLois Curfman McInnes           if (imag(a->a[bs2*k + l*bs + j]) != 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0)
17644cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
17744cd7ae7SLois Curfman McInnes               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
17844cd7ae7SLois Curfman McInnes           else if (real(a->a[bs2*k + l*bs + j]) != 0.0)
17944cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
18044cd7ae7SLois Curfman McInnes #else
18144cd7ae7SLois Curfman McInnes           if (a->a[bs2*k + l*bs + j] != 0.0)
18244cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
18344cd7ae7SLois Curfman McInnes #endif
18444cd7ae7SLois Curfman McInnes           }
18544cd7ae7SLois Curfman McInnes         }
18644cd7ae7SLois Curfman McInnes         fprintf(fd,"\n");
18744cd7ae7SLois Curfman McInnes       }
18844cd7ae7SLois Curfman McInnes     }
18944cd7ae7SLois Curfman McInnes   }
1902593348eSBarry Smith   else {
191b6490206SBarry Smith     for ( i=0; i<a->mbs; i++ ) {
192b6490206SBarry Smith       for ( j=0; j<bs; j++ ) {
193b6490206SBarry Smith         fprintf(fd,"row %d:",i*bs+j);
194b6490206SBarry Smith         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
195b6490206SBarry Smith           for ( l=0; l<bs; l++ ) {
19688685aaeSLois Curfman McInnes #if defined(PETSC_COMPLEX)
1977e67e3f9SSatish Balay           if (imag(a->a[bs2*k + l*bs + j]) != 0.0) {
19888685aaeSLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
1997e67e3f9SSatish Balay               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
20088685aaeSLois Curfman McInnes           }
20188685aaeSLois Curfman McInnes           else {
2027e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
20388685aaeSLois Curfman McInnes           }
20488685aaeSLois Curfman McInnes #else
2057e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
20688685aaeSLois Curfman McInnes #endif
2072593348eSBarry Smith           }
2082593348eSBarry Smith         }
2092593348eSBarry Smith         fprintf(fd,"\n");
2102593348eSBarry Smith       }
2112593348eSBarry Smith     }
212b6490206SBarry Smith   }
2132593348eSBarry Smith   fflush(fd);
2142593348eSBarry Smith   return 0;
2152593348eSBarry Smith }
2162593348eSBarry Smith 
2175615d1e5SSatish Balay #undef __FUNC__
2185eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Draw" /* ADIC Ignore */
2193270192aSSatish Balay static int MatView_SeqBAIJ_Draw(Mat A,Viewer viewer)
2203270192aSSatish Balay {
2213270192aSSatish Balay   Mat_SeqBAIJ  *a=(Mat_SeqBAIJ *) A->data;
2223270192aSSatish Balay   int          row,ierr,i,j,k,l,mbs=a->mbs,pause,color,bs=a->bs,bs2=a->bs2;
2233270192aSSatish Balay   double       xl,yl,xr,yr,w,h,xc,yc,scale = 1.0,x_l,x_r,y_l,y_r;
2243270192aSSatish Balay   Scalar       *aa;
2253270192aSSatish Balay   Draw         draw;
2263270192aSSatish Balay   DrawButton   button;
2273270192aSSatish Balay   PetscTruth   isnull;
2283270192aSSatish Balay 
2293270192aSSatish Balay   ViewerDrawGetDraw(viewer,&draw);
2303270192aSSatish Balay   ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0;
2313270192aSSatish Balay 
2323270192aSSatish Balay   xr  = a->n; yr = a->m; h = yr/10.0; w = xr/10.0;
2333270192aSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
2343270192aSSatish Balay   ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
2353270192aSSatish Balay   /* loop over matrix elements drawing boxes */
2363270192aSSatish Balay   color = DRAW_BLUE;
2373270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2383270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2393270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2403270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2413270192aSSatish Balay       aa = a->a + j*bs2;
2423270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2433270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2443270192aSSatish Balay           if (PetscReal(*aa++) >=  0.) continue;
245b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2463270192aSSatish Balay         }
2473270192aSSatish Balay       }
2483270192aSSatish Balay     }
2493270192aSSatish Balay   }
2503270192aSSatish Balay   color = DRAW_CYAN;
2513270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2523270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2533270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2543270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2553270192aSSatish Balay       aa = a->a + j*bs2;
2563270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2573270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2583270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
259b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2603270192aSSatish Balay         }
2613270192aSSatish Balay       }
2623270192aSSatish Balay     }
2633270192aSSatish Balay   }
2643270192aSSatish Balay 
2653270192aSSatish Balay   color = DRAW_RED;
2663270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2673270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2683270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2693270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2703270192aSSatish Balay       aa = a->a + j*bs2;
2713270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2723270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2733270192aSSatish Balay           if (PetscReal(*aa++) <= 0.) continue;
274b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2753270192aSSatish Balay         }
2763270192aSSatish Balay       }
2773270192aSSatish Balay     }
2783270192aSSatish Balay   }
2793270192aSSatish Balay 
2803270192aSSatish Balay   DrawFlush(draw);
2813270192aSSatish Balay   DrawGetPause(draw,&pause);
2823270192aSSatish Balay   if (pause >= 0) { PetscSleep(pause); return 0;}
2833270192aSSatish Balay 
2843270192aSSatish Balay   /* allow the matrix to zoom or shrink */
2853270192aSSatish Balay   ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
2863270192aSSatish Balay   while (button != BUTTON_RIGHT) {
2873270192aSSatish Balay     DrawClear(draw);
2883270192aSSatish Balay     if (button == BUTTON_LEFT) scale = .5;
2893270192aSSatish Balay     else if (button == BUTTON_CENTER) scale = 2.;
2903270192aSSatish Balay     xl = scale*(xl + w - xc) + xc - w*scale;
2913270192aSSatish Balay     xr = scale*(xr - w - xc) + xc + w*scale;
2923270192aSSatish Balay     yl = scale*(yl + h - yc) + yc - h*scale;
2933270192aSSatish Balay     yr = scale*(yr - h - yc) + yc + h*scale;
2943270192aSSatish Balay     w *= scale; h *= scale;
2953270192aSSatish Balay     ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
2963270192aSSatish Balay     color = DRAW_BLUE;
2973270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2983270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2993270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3003270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3013270192aSSatish Balay         aa = a->a + j*bs2;
3023270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3033270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3043270192aSSatish Balay             if (PetscReal(*aa++) >=  0.) continue;
305b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3063270192aSSatish Balay           }
3073270192aSSatish Balay         }
3083270192aSSatish Balay       }
3093270192aSSatish Balay     }
3103270192aSSatish Balay     color = DRAW_CYAN;
3113270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3123270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3133270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3143270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3153270192aSSatish Balay         aa = a->a + j*bs2;
3163270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3173270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3183270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
319b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3203270192aSSatish Balay           }
3213270192aSSatish Balay         }
3223270192aSSatish Balay       }
3233270192aSSatish Balay     }
3243270192aSSatish Balay 
3253270192aSSatish Balay     color = DRAW_RED;
3263270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3273270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3283270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3293270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3303270192aSSatish Balay         aa = a->a + j*bs2;
3313270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3323270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3333270192aSSatish Balay             if (PetscReal(*aa++) <= 0.) continue;
334b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3353270192aSSatish Balay           }
3363270192aSSatish Balay         }
3373270192aSSatish Balay       }
3383270192aSSatish Balay     }
3393270192aSSatish Balay     ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
3403270192aSSatish Balay   }
3413270192aSSatish Balay   return 0;
3423270192aSSatish Balay }
3433270192aSSatish Balay 
3445615d1e5SSatish Balay #undef __FUNC__
3455eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ" /* ADIC Ignore */
3468f6be9afSLois Curfman McInnes int MatView_SeqBAIJ(PetscObject obj,Viewer viewer)
3472593348eSBarry Smith {
3482593348eSBarry Smith   Mat         A = (Mat) obj;
34919bcc07fSBarry Smith   ViewerType  vtype;
35019bcc07fSBarry Smith   int         ierr;
3512593348eSBarry Smith 
35219bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
35319bcc07fSBarry Smith   if (vtype == MATLAB_VIEWER) {
354e3372554SBarry Smith     SETERRQ(1,0,"Matlab viewer not supported");
3552593348eSBarry Smith   }
35619bcc07fSBarry Smith   else if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER){
357b6490206SBarry Smith     return MatView_SeqBAIJ_ASCII(A,viewer);
3582593348eSBarry Smith   }
35919bcc07fSBarry Smith   else if (vtype == BINARY_FILE_VIEWER) {
360b6490206SBarry Smith     return MatView_SeqBAIJ_Binary(A,viewer);
3612593348eSBarry Smith   }
36219bcc07fSBarry Smith   else if (vtype == DRAW_VIEWER) {
3633270192aSSatish Balay     return MatView_SeqBAIJ_Draw(A,viewer);
3642593348eSBarry Smith   }
3652593348eSBarry Smith   return 0;
3662593348eSBarry Smith }
367b6490206SBarry Smith 
368119a934aSSatish Balay #define CHUNKSIZE  10
369cd0e1443SSatish Balay 
3705615d1e5SSatish Balay #undef __FUNC__
3715615d1e5SSatish Balay #define __FUNC__ "MatSetValues_SeqBAIJ"
372639f9d9dSBarry Smith int MatSetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
373cd0e1443SSatish Balay {
374cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
375cd0e1443SSatish Balay   int         *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
376cd0e1443SSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
377a7c10996SSatish Balay   int         *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol;
3789df24120SSatish Balay   int          ridx,cidx,bs2=a->bs2;
379cd0e1443SSatish Balay   Scalar      *ap,value,*aa=a->a,*bap;
380cd0e1443SSatish Balay 
381cd0e1443SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over added rows */
382cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
3833b2fbd54SBarry Smith #if defined(PETSC_BOPT_g)
384e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
385e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
3863b2fbd54SBarry Smith #endif
3872c3acbe9SBarry Smith     rp   = aj + ai[brow];
3882c3acbe9SBarry Smith     ap   = aa + bs2*ai[brow];
3892c3acbe9SBarry Smith     rmax = imax[brow];
3902c3acbe9SBarry Smith     nrow = ailen[brow];
391cd0e1443SSatish Balay     low  = 0;
392cd0e1443SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over added columns */
3933b2fbd54SBarry Smith #if defined(PETSC_BOPT_g)
394e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
395e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
3963b2fbd54SBarry Smith #endif
397a7c10996SSatish Balay       col = in[l]; bcol = col/bs;
398cd0e1443SSatish Balay       ridx = row % bs; cidx = col % bs;
399cd0e1443SSatish Balay       if (roworiented) {
400cd0e1443SSatish Balay         value = *v++;
401cd0e1443SSatish Balay       }
402cd0e1443SSatish Balay       else {
403cd0e1443SSatish Balay         value = v[k + l*m];
404cd0e1443SSatish Balay       }
405cd0e1443SSatish Balay       if (!sorted) low = 0; high = nrow;
4062c3acbe9SBarry Smith       while (high-low > 7) {
407cd0e1443SSatish Balay         t = (low+high)/2;
408cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
409cd0e1443SSatish Balay         else              low  = t;
410cd0e1443SSatish Balay       }
411cd0e1443SSatish Balay       for ( i=low; i<high; i++ ) {
412cd0e1443SSatish Balay         if (rp[i] > bcol) break;
413cd0e1443SSatish Balay         if (rp[i] == bcol) {
4147e67e3f9SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
415cd0e1443SSatish Balay           if (is == ADD_VALUES) *bap += value;
416cd0e1443SSatish Balay           else                  *bap  = value;
417f1241b54SBarry Smith           goto noinsert1;
418cd0e1443SSatish Balay         }
419cd0e1443SSatish Balay       }
420c2653b3dSLois Curfman McInnes       if (nonew == 1) goto noinsert1;
421c2653b3dSLois Curfman McInnes       else if (nonew == -1) SETERRQ(1,1,"Inserting a new nonzero in the matrix");
422cd0e1443SSatish Balay       if (nrow >= rmax) {
423cd0e1443SSatish Balay         /* there is no extra room in row, therefore enlarge */
424cd0e1443SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
425cd0e1443SSatish Balay         Scalar *new_a;
426cd0e1443SSatish Balay 
427cd0e1443SSatish Balay         /* malloc new storage space */
4287e67e3f9SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
429cd0e1443SSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
4307e67e3f9SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz);
431cd0e1443SSatish Balay         new_i   = new_j + new_nz;
432cd0e1443SSatish Balay 
433cd0e1443SSatish Balay         /* copy over old data into new slots */
434cd0e1443SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];}
4357e67e3f9SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
436a7c10996SSatish Balay         PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));
437a7c10996SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow);
438a7c10996SSatish Balay         PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,
439cd0e1443SSatish Balay                                                            len*sizeof(int));
440a7c10996SSatish Balay         PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));
441a7c10996SSatish Balay         PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
442a7c10996SSatish Balay         PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),
443a7c10996SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));
444cd0e1443SSatish Balay         /* free up old matrix storage */
445cd0e1443SSatish Balay         PetscFree(a->a);
446cd0e1443SSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
447cd0e1443SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
448cd0e1443SSatish Balay         a->singlemalloc = 1;
449cd0e1443SSatish Balay 
450a7c10996SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
451cd0e1443SSatish Balay         rmax = imax[brow] = imax[brow] + CHUNKSIZE;
4527e67e3f9SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
45318e7b8e4SLois Curfman McInnes         a->maxnz += bs2*CHUNKSIZE;
454cd0e1443SSatish Balay         a->reallocs++;
455119a934aSSatish Balay         a->nz++;
456cd0e1443SSatish Balay       }
4577e67e3f9SSatish Balay       N = nrow++ - 1;
458cd0e1443SSatish Balay       /* shift up all the later entries in this row */
459cd0e1443SSatish Balay       for ( ii=N; ii>=i; ii-- ) {
460cd0e1443SSatish Balay         rp[ii+1] = rp[ii];
4617e67e3f9SSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
462cd0e1443SSatish Balay       }
4637e67e3f9SSatish Balay       if (N>=i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
464cd0e1443SSatish Balay       rp[i]                      = bcol;
4657e67e3f9SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
466f1241b54SBarry Smith       noinsert1:;
467cd0e1443SSatish Balay       low = i;
468cd0e1443SSatish Balay     }
469cd0e1443SSatish Balay     ailen[brow] = nrow;
470cd0e1443SSatish Balay   }
471cd0e1443SSatish Balay   return 0;
472cd0e1443SSatish Balay }
473cd0e1443SSatish Balay 
4745615d1e5SSatish Balay #undef __FUNC__
47592c4ed94SBarry Smith #define __FUNC__ "MatSetValues_SeqBAIJ"
47692c4ed94SBarry Smith int MatSetValuesBlocked_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
47792c4ed94SBarry Smith {
47892c4ed94SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
4798a84c255SSatish Balay   int         *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
4800e324ae4SSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen;
4810e324ae4SSatish Balay   int         roworiented=a->roworiented;
4828a84c255SSatish Balay   int         *aj=a->j,nonew=a->nonew;
4830e324ae4SSatish Balay   int          bs2=a->bs2,bs=a->bs,stepval;
4840e324ae4SSatish Balay   Scalar      *ap,*value=v,*aa=a->a,*bap;
48592c4ed94SBarry Smith 
4860e324ae4SSatish Balay   if (roworiented) {
4870e324ae4SSatish Balay     stepval = (n-1)*bs;
4880e324ae4SSatish Balay   } else {
4890e324ae4SSatish Balay     stepval = (m-1)*bs;
4900e324ae4SSatish Balay   }
49192c4ed94SBarry Smith   for ( k=0; k<m; k++ ) { /* loop over added rows */
49292c4ed94SBarry Smith     row  = im[k];
49392c4ed94SBarry Smith #if defined(PETSC_BOPT_g)
49492c4ed94SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
4958a84c255SSatish Balay     if (row >= a->mbs) SETERRQ(1,0,"Row too large");
49692c4ed94SBarry Smith #endif
49792c4ed94SBarry Smith     rp   = aj + ai[row];
49892c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
49992c4ed94SBarry Smith     rmax = imax[row];
50092c4ed94SBarry Smith     nrow = ailen[row];
50192c4ed94SBarry Smith     low  = 0;
50292c4ed94SBarry Smith     for ( l=0; l<n; l++ ) { /* loop over added columns */
50392c4ed94SBarry Smith #if defined(PETSC_BOPT_g)
50492c4ed94SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
5058a84c255SSatish Balay       if (in[l] >= a->nbs) SETERRQ(1,0,"Column too large");
50692c4ed94SBarry Smith #endif
50792c4ed94SBarry Smith       col = in[l];
50892c4ed94SBarry Smith       if (roworiented) {
5090e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
5100e324ae4SSatish Balay       } else {
5110e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
51292c4ed94SBarry Smith       }
51392c4ed94SBarry Smith       if (!sorted) low = 0; high = nrow;
51492c4ed94SBarry Smith       while (high-low > 7) {
51592c4ed94SBarry Smith         t = (low+high)/2;
51692c4ed94SBarry Smith         if (rp[t] > col) high = t;
51792c4ed94SBarry Smith         else             low  = t;
51892c4ed94SBarry Smith       }
51992c4ed94SBarry Smith       for ( i=low; i<high; i++ ) {
52092c4ed94SBarry Smith         if (rp[i] > col) break;
52192c4ed94SBarry Smith         if (rp[i] == col) {
5228a84c255SSatish Balay           bap  = ap +  bs2*i;
5230e324ae4SSatish Balay           if (roworiented) {
5248a84c255SSatish Balay             if (is == ADD_VALUES) {
5250e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5268a84c255SSatish Balay                 for (jj=ii; jj<bs2; jj+=bs )
5278a84c255SSatish Balay                   bap[jj] += *value++;
5280e324ae4SSatish Balay             } else {
5290e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5300e324ae4SSatish Balay                 for (jj=ii; jj<bs2; jj+=bs )
5310e324ae4SSatish Balay                   bap[jj] = *value++;
5328a84c255SSatish Balay             }
5330e324ae4SSatish Balay           } else {
5340e324ae4SSatish Balay             if (is == ADD_VALUES) {
5350e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5360e324ae4SSatish Balay                 for (jj=0; jj<bs; jj++ )
5370e324ae4SSatish Balay                   *bap++ += *value++;
5380e324ae4SSatish Balay             } else {
5390e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5400e324ae4SSatish Balay                 for (jj=0; jj<bs; jj++ )
5410e324ae4SSatish Balay                   *bap++  = *value++;
5420e324ae4SSatish Balay             }
5438a84c255SSatish Balay           }
544f1241b54SBarry Smith           goto noinsert2;
54592c4ed94SBarry Smith         }
54692c4ed94SBarry Smith       }
547f1241b54SBarry Smith       if (nonew) goto noinsert2;
54892c4ed94SBarry Smith       if (nrow >= rmax) {
54992c4ed94SBarry Smith         /* there is no extra room in row, therefore enlarge */
55092c4ed94SBarry Smith         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
55192c4ed94SBarry Smith         Scalar *new_a;
55292c4ed94SBarry Smith 
55392c4ed94SBarry Smith         /* malloc new storage space */
55492c4ed94SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
55592c4ed94SBarry Smith         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
55692c4ed94SBarry Smith         new_j   = (int *) (new_a + bs2*new_nz);
55792c4ed94SBarry Smith         new_i   = new_j + new_nz;
55892c4ed94SBarry Smith 
55992c4ed94SBarry Smith         /* copy over old data into new slots */
56092c4ed94SBarry Smith         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];}
56192c4ed94SBarry Smith         for ( ii=row+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
56292c4ed94SBarry Smith         PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int));
56392c4ed94SBarry Smith         len = (new_nz - CHUNKSIZE - ai[row] - nrow);
56492c4ed94SBarry Smith         PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,
56592c4ed94SBarry Smith                                                            len*sizeof(int));
56692c4ed94SBarry Smith         PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(Scalar));
56792c4ed94SBarry Smith         PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
56892c4ed94SBarry Smith         PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),
56992c4ed94SBarry Smith                     aa+bs2*(ai[row]+nrow),bs2*len*sizeof(Scalar));
57092c4ed94SBarry Smith         /* free up old matrix storage */
57192c4ed94SBarry Smith         PetscFree(a->a);
57292c4ed94SBarry Smith         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
57392c4ed94SBarry Smith         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
57492c4ed94SBarry Smith         a->singlemalloc = 1;
57592c4ed94SBarry Smith 
57692c4ed94SBarry Smith         rp   = aj + ai[row]; ap = aa + bs2*ai[row];
57792c4ed94SBarry Smith         rmax = imax[row] = imax[row] + CHUNKSIZE;
57892c4ed94SBarry Smith         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
57992c4ed94SBarry Smith         a->maxnz += bs2*CHUNKSIZE;
58092c4ed94SBarry Smith         a->reallocs++;
58192c4ed94SBarry Smith         a->nz++;
58292c4ed94SBarry Smith       }
58392c4ed94SBarry Smith       N = nrow++ - 1;
58492c4ed94SBarry Smith       /* shift up all the later entries in this row */
58592c4ed94SBarry Smith       for ( ii=N; ii>=i; ii-- ) {
58692c4ed94SBarry Smith         rp[ii+1] = rp[ii];
58792c4ed94SBarry Smith         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
58892c4ed94SBarry Smith       }
58992c4ed94SBarry Smith       if (N >= i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
59092c4ed94SBarry Smith       rp[i] = col;
5918a84c255SSatish Balay       bap   = ap +  bs2*i;
5920e324ae4SSatish Balay       if (roworiented) {
5930e324ae4SSatish Balay         for ( ii=0; ii<bs; ii++,value+=stepval)
5948a84c255SSatish Balay           for (jj=ii; jj<bs2; jj+=bs )
5950e324ae4SSatish Balay             bap[jj] = *value++;
5960e324ae4SSatish Balay       } else {
5970e324ae4SSatish Balay         for ( ii=0; ii<bs; ii++,value+=stepval )
5980e324ae4SSatish Balay           for (jj=0; jj<bs; jj++ )
5990e324ae4SSatish Balay             *bap++  = *value++;
6000e324ae4SSatish Balay       }
601f1241b54SBarry Smith       noinsert2:;
60292c4ed94SBarry Smith       low = i;
60392c4ed94SBarry Smith     }
60492c4ed94SBarry Smith     ailen[row] = nrow;
60592c4ed94SBarry Smith   }
60692c4ed94SBarry Smith   return 0;
60792c4ed94SBarry Smith }
60892c4ed94SBarry Smith 
60992c4ed94SBarry Smith #undef __FUNC__
6105eea60f9SBarry Smith #define __FUNC__ "MatGetSize_SeqBAIJ" /* ADIC Ignore */
6118f6be9afSLois Curfman McInnes int MatGetSize_SeqBAIJ(Mat A,int *m,int *n)
6120b824a48SSatish Balay {
6130b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6140b824a48SSatish Balay   *m = a->m; *n = a->n;
6150b824a48SSatish Balay   return 0;
6160b824a48SSatish Balay }
6170b824a48SSatish Balay 
6185615d1e5SSatish Balay #undef __FUNC__
6195eea60f9SBarry Smith #define __FUNC__ "MatGetOwnershipRange_SeqBAIJ" /* ADIC Ignore */
6208f6be9afSLois Curfman McInnes int MatGetOwnershipRange_SeqBAIJ(Mat A,int *m,int *n)
6210b824a48SSatish Balay {
6220b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6230b824a48SSatish Balay   *m = 0; *n = a->m;
6240b824a48SSatish Balay   return 0;
6250b824a48SSatish Balay }
6260b824a48SSatish Balay 
6275615d1e5SSatish Balay #undef __FUNC__
6285615d1e5SSatish Balay #define __FUNC__ "MatGetRow_SeqBAIJ"
6299867e207SSatish Balay int MatGetRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
6309867e207SSatish Balay {
6319867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6327e67e3f9SSatish Balay   int          itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
6339867e207SSatish Balay   Scalar      *aa,*v_i,*aa_i;
6349867e207SSatish Balay 
6359867e207SSatish Balay   bs  = a->bs;
6369867e207SSatish Balay   ai  = a->i;
6379867e207SSatish Balay   aj  = a->j;
6389867e207SSatish Balay   aa  = a->a;
6399df24120SSatish Balay   bs2 = a->bs2;
6409867e207SSatish Balay 
641e3372554SBarry Smith   if (row < 0 || row >= a->m) SETERRQ(1,0,"Row out of range");
6429867e207SSatish Balay 
6439867e207SSatish Balay   bn  = row/bs;   /* Block number */
6449867e207SSatish Balay   bp  = row % bs; /* Block Position */
6459867e207SSatish Balay   M   = ai[bn+1] - ai[bn];
6469867e207SSatish Balay   *nz = bs*M;
6479867e207SSatish Balay 
6489867e207SSatish Balay   if (v) {
6499867e207SSatish Balay     *v = 0;
6509867e207SSatish Balay     if (*nz) {
6519867e207SSatish Balay       *v = (Scalar *) PetscMalloc( (*nz)*sizeof(Scalar) ); CHKPTRQ(*v);
6529867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6539867e207SSatish Balay         v_i  = *v + i*bs;
6547e67e3f9SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
6557e67e3f9SSatish Balay         for ( j=bp,k=0; j<bs2; j+=bs,k++ ) {v_i[k] = aa_i[j];}
6569867e207SSatish Balay       }
6579867e207SSatish Balay     }
6589867e207SSatish Balay   }
6599867e207SSatish Balay 
6609867e207SSatish Balay   if (idx) {
6619867e207SSatish Balay     *idx = 0;
6629867e207SSatish Balay     if (*nz) {
6639867e207SSatish Balay       *idx = (int *) PetscMalloc( (*nz)*sizeof(int) ); CHKPTRQ(*idx);
6649867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6659867e207SSatish Balay         idx_i = *idx + i*bs;
6669867e207SSatish Balay         itmp  = bs*aj[ai[bn] + i];
6679867e207SSatish Balay         for ( j=0; j<bs; j++ ) {idx_i[j] = itmp++;}
6689867e207SSatish Balay       }
6699867e207SSatish Balay     }
6709867e207SSatish Balay   }
6719867e207SSatish Balay   return 0;
6729867e207SSatish Balay }
6739867e207SSatish Balay 
6745615d1e5SSatish Balay #undef __FUNC__
6755eea60f9SBarry Smith #define __FUNC__ "MatRestoreRow_SeqBAIJ" /* ADIC Ignore */
6769867e207SSatish Balay int MatRestoreRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
6779867e207SSatish Balay {
6789867e207SSatish Balay   if (idx) {if (*idx) PetscFree(*idx);}
6799867e207SSatish Balay   if (v)   {if (*v)   PetscFree(*v);}
6809867e207SSatish Balay   return 0;
6819867e207SSatish Balay }
682b6490206SBarry Smith 
6835615d1e5SSatish Balay #undef __FUNC__
6845615d1e5SSatish Balay #define __FUNC__ "MatTranspose_SeqBAIJ"
6858f6be9afSLois Curfman McInnes int MatTranspose_SeqBAIJ(Mat A,Mat *B)
686f2501298SSatish Balay {
687f2501298SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data;
688f2501298SSatish Balay   Mat         C;
689f2501298SSatish Balay   int         i,j,k,ierr,*aj=a->j,*ai=a->i,bs=a->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
6909df24120SSatish Balay   int         *rows,*cols,bs2=a->bs2;
691f2501298SSatish Balay   Scalar      *array=a->a;
692f2501298SSatish Balay 
693f2501298SSatish Balay   if (B==PETSC_NULL && mbs!=nbs)
694e3372554SBarry Smith     SETERRQ(1,0,"Square matrix only for in-place");
695f2501298SSatish Balay   col = (int *) PetscMalloc((1+nbs)*sizeof(int)); CHKPTRQ(col);
696f2501298SSatish Balay   PetscMemzero(col,(1+nbs)*sizeof(int));
697a7c10996SSatish Balay 
698a7c10996SSatish Balay   for ( i=0; i<ai[mbs]; i++ ) col[aj[i]] += 1;
699f2501298SSatish Balay   ierr = MatCreateSeqBAIJ(A->comm,bs,a->n,a->m,PETSC_NULL,col,&C); CHKERRQ(ierr);
700f2501298SSatish Balay   PetscFree(col);
701f2501298SSatish Balay   rows = (int *) PetscMalloc(2*bs*sizeof(int)); CHKPTRQ(rows);
702f2501298SSatish Balay   cols = rows + bs;
703f2501298SSatish Balay   for ( i=0; i<mbs; i++ ) {
704f2501298SSatish Balay     cols[0] = i*bs;
705f2501298SSatish Balay     for (k=1; k<bs; k++ ) cols[k] = cols[k-1] + 1;
706f2501298SSatish Balay     len = ai[i+1] - ai[i];
707f2501298SSatish Balay     for ( j=0; j<len; j++ ) {
708f2501298SSatish Balay       rows[0] = (*aj++)*bs;
709f2501298SSatish Balay       for (k=1; k<bs; k++ ) rows[k] = rows[k-1] + 1;
710f2501298SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES); CHKERRQ(ierr);
711f2501298SSatish Balay       array += bs2;
712f2501298SSatish Balay     }
713f2501298SSatish Balay   }
7141073c447SSatish Balay   PetscFree(rows);
715f2501298SSatish Balay 
7166d4a8577SBarry Smith   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
7176d4a8577SBarry Smith   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
718f2501298SSatish Balay 
719f2501298SSatish Balay   if (B != PETSC_NULL) {
720f2501298SSatish Balay     *B = C;
721f2501298SSatish Balay   } else {
722f2501298SSatish Balay     /* This isn't really an in-place transpose */
723f2501298SSatish Balay     PetscFree(a->a);
724f2501298SSatish Balay     if (!a->singlemalloc) {PetscFree(a->i); PetscFree(a->j);}
725f2501298SSatish Balay     if (a->diag) PetscFree(a->diag);
726f2501298SSatish Balay     if (a->ilen) PetscFree(a->ilen);
727f2501298SSatish Balay     if (a->imax) PetscFree(a->imax);
728f2501298SSatish Balay     if (a->solve_work) PetscFree(a->solve_work);
729f2501298SSatish Balay     PetscFree(a);
730f2501298SSatish Balay     PetscMemcpy(A,C,sizeof(struct _Mat));
731f2501298SSatish Balay     PetscHeaderDestroy(C);
732f2501298SSatish Balay   }
733f2501298SSatish Balay   return 0;
734f2501298SSatish Balay }
735f2501298SSatish Balay 
736f2501298SSatish Balay 
7375615d1e5SSatish Balay #undef __FUNC__
7385615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_SeqBAIJ"
7398f6be9afSLois Curfman McInnes int MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
740584200bdSSatish Balay {
741584200bdSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
742584200bdSSatish Balay   int        fshift = 0,i,j,*ai = a->i, *aj = a->j, *imax = a->imax;
743a7c10996SSatish Balay   int        m = a->m,*ip, N, *ailen = a->ilen;
744d402145bSBarry Smith   int        mbs = a->mbs, bs2 = a->bs2,rmax;
745584200bdSSatish Balay   Scalar     *aa = a->a, *ap;
746584200bdSSatish Balay 
7476d4a8577SBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) return 0;
748584200bdSSatish Balay 
749d402145bSBarry Smith   rmax = ailen[0];
750584200bdSSatish Balay   for ( i=1; i<mbs; i++ ) {
751584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
752584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
753d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
754584200bdSSatish Balay     if (fshift) {
755a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
756584200bdSSatish Balay       N = ailen[i];
757584200bdSSatish Balay       for ( j=0; j<N; j++ ) {
758584200bdSSatish Balay         ip[j-fshift] = ip[j];
7597e67e3f9SSatish Balay         PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(Scalar));
760584200bdSSatish Balay       }
761584200bdSSatish Balay     }
762584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
763584200bdSSatish Balay   }
764584200bdSSatish Balay   if (mbs) {
765584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
766584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
767584200bdSSatish Balay   }
768584200bdSSatish Balay   /* reset ilen and imax for each row */
769584200bdSSatish Balay   for ( i=0; i<mbs; i++ ) {
770584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
771584200bdSSatish Balay   }
772a7c10996SSatish Balay   a->nz = ai[mbs];
773584200bdSSatish Balay 
774584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
775584200bdSSatish Balay   if (fshift && a->diag) {
776584200bdSSatish Balay     PetscFree(a->diag);
777584200bdSSatish Balay     PLogObjectMemory(A,-(m+1)*sizeof(int));
778584200bdSSatish Balay     a->diag = 0;
779584200bdSSatish Balay   }
7803d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n",
781219d9a1aSLois Curfman McInnes            m,a->n,a->bs,fshift*bs2,a->nz*bs2);
7823d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Number of mallocs during MatSetValues is %d\n",
783584200bdSSatish Balay            a->reallocs);
784d402145bSBarry Smith   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Most nonzeros blocks in any row is %d\n",rmax);
785e2f3b5e9SSatish Balay   a->reallocs          = 0;
7864e220ebcSLois Curfman McInnes   A->info.nz_unneeded  = (double)fshift*bs2;
7874e220ebcSLois Curfman McInnes 
788584200bdSSatish Balay   return 0;
789584200bdSSatish Balay }
790584200bdSSatish Balay 
7915615d1e5SSatish Balay #undef __FUNC__
7925615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_SeqBAIJ"
7938f6be9afSLois Curfman McInnes int MatZeroEntries_SeqBAIJ(Mat A)
7942593348eSBarry Smith {
795b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
7969df24120SSatish Balay   PetscMemzero(a->a,a->bs2*a->i[a->mbs]*sizeof(Scalar));
7972593348eSBarry Smith   return 0;
7982593348eSBarry Smith }
7992593348eSBarry Smith 
8005615d1e5SSatish Balay #undef __FUNC__
8015eea60f9SBarry Smith #define __FUNC__ "MatDestroy_SeqBAIJ" /* ADIC Ignore */
802b6490206SBarry Smith int MatDestroy_SeqBAIJ(PetscObject obj)
8032593348eSBarry Smith {
8042593348eSBarry Smith   Mat         A  = (Mat) obj;
805b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
80690f02eecSBarry Smith   int         ierr;
8072593348eSBarry Smith 
8082593348eSBarry Smith #if defined(PETSC_LOG)
8092593348eSBarry Smith   PLogObjectState(obj,"Rows=%d, Cols=%d, NZ=%d",a->m,a->n,a->nz);
8102593348eSBarry Smith #endif
8112593348eSBarry Smith   PetscFree(a->a);
8122593348eSBarry Smith   if (!a->singlemalloc) { PetscFree(a->i); PetscFree(a->j);}
8132593348eSBarry Smith   if (a->diag) PetscFree(a->diag);
8142593348eSBarry Smith   if (a->ilen) PetscFree(a->ilen);
8152593348eSBarry Smith   if (a->imax) PetscFree(a->imax);
8162593348eSBarry Smith   if (a->solve_work) PetscFree(a->solve_work);
817de6a44a3SBarry Smith   if (a->mult_work) PetscFree(a->mult_work);
8182593348eSBarry Smith   PetscFree(a);
81990f02eecSBarry Smith   if (A->mapping) {
82090f02eecSBarry Smith     ierr = ISLocalToGlobalMappingDestroy(A->mapping); CHKERRQ(ierr);
82190f02eecSBarry Smith   }
822f2655603SLois Curfman McInnes   PLogObjectDestroy(A);
823f2655603SLois Curfman McInnes   PetscHeaderDestroy(A);
8242593348eSBarry Smith   return 0;
8252593348eSBarry Smith }
8262593348eSBarry Smith 
8275615d1e5SSatish Balay #undef __FUNC__
8285eea60f9SBarry Smith #define __FUNC__ "MatSetOption_SeqBAIJ" /* ADIC Ignore */
8298f6be9afSLois Curfman McInnes int MatSetOption_SeqBAIJ(Mat A,MatOption op)
8302593348eSBarry Smith {
831b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
8326d4a8577SBarry Smith   if      (op == MAT_ROW_ORIENTED)               a->roworiented = 1;
8336d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED)            a->roworiented = 0;
8346d4a8577SBarry Smith   else if (op == MAT_COLUMNS_SORTED)             a->sorted      = 1;
835219d9a1aSLois Curfman McInnes   else if (op == MAT_COLUMNS_UNSORTED)           a->sorted      = 0;
8366d4a8577SBarry Smith   else if (op == MAT_NO_NEW_NONZERO_LOCATIONS)   a->nonew       = 1;
837c2653b3dSLois Curfman McInnes   else if (op == MAT_NEW_NONZERO_LOCATION_ERROR) a->nonew       = -1;
8386d4a8577SBarry Smith   else if (op == MAT_YES_NEW_NONZERO_LOCATIONS)  a->nonew       = 0;
8396d4a8577SBarry Smith   else if (op == MAT_ROWS_SORTED ||
840219d9a1aSLois Curfman McInnes            op == MAT_ROWS_UNSORTED ||
8416d4a8577SBarry Smith            op == MAT_SYMMETRIC ||
8426d4a8577SBarry Smith            op == MAT_STRUCTURALLY_SYMMETRIC ||
84390f02eecSBarry Smith            op == MAT_YES_NEW_DIAGONALS ||
844*2b362799SSatish Balay            op == MAT_IGNORE_OFF_PROC_ENTRIES)
84594a424c1SBarry Smith     PLogInfo(A,"Info:MatSetOption_SeqBAIJ:Option ignored\n");
8466d4a8577SBarry Smith   else if (op == MAT_NO_NEW_DIAGONALS)
847e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");}
8482593348eSBarry Smith   else
849e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"unknown option");}
8502593348eSBarry Smith   return 0;
8512593348eSBarry Smith }
8522593348eSBarry Smith 
8532593348eSBarry Smith 
8542593348eSBarry Smith /* -------------------------------------------------------*/
8552593348eSBarry Smith /* Should check that shapes of vectors and matrices match */
8562593348eSBarry Smith /* -------------------------------------------------------*/
857b6490206SBarry Smith #include "pinclude/plapack.h"
858b6490206SBarry Smith 
8595615d1e5SSatish Balay #undef __FUNC__
8605615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_1"
86139b95ed1SBarry Smith static int MatMult_SeqBAIJ_1(Mat A,Vec xx,Vec zz)
8622593348eSBarry Smith {
863b6490206SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
86439b95ed1SBarry Smith   register Scalar *x,*z,*v,sum;
865c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
8662593348eSBarry Smith 
867c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
868c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
869b6490206SBarry Smith 
870119a934aSSatish Balay   idx   = a->j;
871119a934aSSatish Balay   v     = a->a;
872119a934aSSatish Balay   ii    = a->i;
873119a934aSSatish Balay 
874119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
875119a934aSSatish Balay     n    = ii[1] - ii[0]; ii++;
876119a934aSSatish Balay     sum  = 0.0;
877119a934aSSatish Balay     while (n--) sum += *v++ * x[*idx++];
8781a6a6d98SBarry Smith     z[i] = sum;
879119a934aSSatish Balay   }
880c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
881c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
88239b95ed1SBarry Smith   PLogFlops(2*a->nz - a->m);
88339b95ed1SBarry Smith   return 0;
88439b95ed1SBarry Smith }
88539b95ed1SBarry Smith 
8865615d1e5SSatish Balay #undef __FUNC__
8875615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_2"
88839b95ed1SBarry Smith static int MatMult_SeqBAIJ_2(Mat A,Vec xx,Vec zz)
88939b95ed1SBarry Smith {
89039b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
89139b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2;
89239b95ed1SBarry Smith   register Scalar x1,x2;
89339b95ed1SBarry Smith   int             mbs=a->mbs,i,*idx,*ii;
894c16cb8f2SBarry Smith   int             j,n;
89539b95ed1SBarry Smith 
896c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
897c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
89839b95ed1SBarry Smith 
89939b95ed1SBarry Smith   idx   = a->j;
90039b95ed1SBarry Smith   v     = a->a;
90139b95ed1SBarry Smith   ii    = a->i;
90239b95ed1SBarry Smith 
903119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
904119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
905119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0;
906119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
907119a934aSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
908119a934aSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
909119a934aSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
910119a934aSSatish Balay       v += 4;
911119a934aSSatish Balay     }
9121a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2;
913119a934aSSatish Balay     z += 2;
914119a934aSSatish Balay   }
915c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
916c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
91739b95ed1SBarry Smith   PLogFlops(4*a->nz - a->m);
91839b95ed1SBarry Smith   return 0;
91939b95ed1SBarry Smith }
92039b95ed1SBarry Smith 
9215615d1e5SSatish Balay #undef __FUNC__
9225615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_3"
92339b95ed1SBarry Smith static int MatMult_SeqBAIJ_3(Mat A,Vec xx,Vec zz)
92439b95ed1SBarry Smith {
92539b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
92639b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
927c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
92839b95ed1SBarry Smith 
929c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
930c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
93139b95ed1SBarry Smith 
93239b95ed1SBarry Smith   idx   = a->j;
93339b95ed1SBarry Smith   v     = a->a;
93439b95ed1SBarry Smith   ii    = a->i;
93539b95ed1SBarry Smith 
936119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
937119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
938119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0;
939119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
940119a934aSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
941119a934aSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
942119a934aSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
943119a934aSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
944119a934aSSatish Balay       v += 9;
945119a934aSSatish Balay     }
9461a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3;
947119a934aSSatish Balay     z += 3;
948119a934aSSatish Balay   }
949c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
950c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
95139b95ed1SBarry Smith   PLogFlops(18*a->nz - a->m);
95239b95ed1SBarry Smith   return 0;
95339b95ed1SBarry Smith }
95439b95ed1SBarry Smith 
9555615d1e5SSatish Balay #undef __FUNC__
9565615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_4"
95739b95ed1SBarry Smith static int MatMult_SeqBAIJ_4(Mat A,Vec xx,Vec zz)
95839b95ed1SBarry Smith {
95939b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
96039b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4;
96139b95ed1SBarry Smith   register Scalar x1,x2,x3,x4;
96239b95ed1SBarry Smith   int             mbs=a->mbs,i,*idx,*ii;
963c16cb8f2SBarry Smith   int             j,n;
96439b95ed1SBarry Smith 
965c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
966c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
96739b95ed1SBarry Smith 
96839b95ed1SBarry Smith   idx   = a->j;
96939b95ed1SBarry Smith   v     = a->a;
97039b95ed1SBarry Smith   ii    = a->i;
97139b95ed1SBarry Smith 
972119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
973119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
974119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0;
975119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
976119a934aSSatish Balay       xb = x + 4*(*idx++);
977119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
978119a934aSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
979119a934aSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
980119a934aSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
981119a934aSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
982119a934aSSatish Balay       v += 16;
983119a934aSSatish Balay     }
9841a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
985119a934aSSatish Balay     z += 4;
986119a934aSSatish Balay   }
987c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
988c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
98939b95ed1SBarry Smith   PLogFlops(32*a->nz - a->m);
99039b95ed1SBarry Smith   return 0;
99139b95ed1SBarry Smith }
99239b95ed1SBarry Smith 
9935615d1e5SSatish Balay #undef __FUNC__
9945615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_5"
99539b95ed1SBarry Smith static int MatMult_SeqBAIJ_5(Mat A,Vec xx,Vec zz)
99639b95ed1SBarry Smith {
99739b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
99839b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5;
99939b95ed1SBarry Smith   register Scalar x1,x2,x3,x4,x5;
1000c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
100139b95ed1SBarry Smith 
1002c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1003c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
100439b95ed1SBarry Smith 
100539b95ed1SBarry Smith   idx   = a->j;
100639b95ed1SBarry Smith   v     = a->a;
100739b95ed1SBarry Smith   ii    = a->i;
100839b95ed1SBarry Smith 
1009119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1010119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
1011119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0;
1012119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1013119a934aSSatish Balay       xb = x + 5*(*idx++);
1014119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1015119a934aSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1016119a934aSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1017119a934aSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1018119a934aSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1019119a934aSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1020119a934aSSatish Balay       v += 25;
1021119a934aSSatish Balay     }
10221a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1023119a934aSSatish Balay     z += 5;
1024119a934aSSatish Balay   }
1025c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1026c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
102739b95ed1SBarry Smith   PLogFlops(50*a->nz - a->m);
102839b95ed1SBarry Smith   return 0;
102939b95ed1SBarry Smith }
103039b95ed1SBarry Smith 
10315615d1e5SSatish Balay #undef __FUNC__
103248e9ddb2SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_7"
103348e9ddb2SSatish Balay static int MatMult_SeqBAIJ_7(Mat A,Vec xx,Vec zz)
103448e9ddb2SSatish Balay {
103548e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
103648e9ddb2SSatish Balay   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
103748e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
103848e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
103948e9ddb2SSatish Balay 
104048e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
104148e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
104248e9ddb2SSatish Balay 
104348e9ddb2SSatish Balay   idx   = a->j;
104448e9ddb2SSatish Balay   v     = a->a;
104548e9ddb2SSatish Balay   ii    = a->i;
104648e9ddb2SSatish Balay 
104748e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
104848e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
104948e9ddb2SSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; sum6 = 0.0; sum7 = 0.0;
105048e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
105148e9ddb2SSatish Balay       xb = x + 7*(*idx++);
105248e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
105348e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
105448e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
105548e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
105648e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
105748e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
105848e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
105948e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
106048e9ddb2SSatish Balay       v += 49;
106148e9ddb2SSatish Balay     }
106248e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
106348e9ddb2SSatish Balay     z += 7;
106448e9ddb2SSatish Balay   }
106548e9ddb2SSatish Balay 
106648e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
106748e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
106848e9ddb2SSatish Balay   PLogFlops(98*a->nz - a->m);
106948e9ddb2SSatish Balay   return 0;
107048e9ddb2SSatish Balay }
107148e9ddb2SSatish Balay 
107248e9ddb2SSatish Balay #undef __FUNC__
10735615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_N"
107439b95ed1SBarry Smith static int MatMult_SeqBAIJ_N(Mat A,Vec xx,Vec zz)
107539b95ed1SBarry Smith {
107639b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
107739b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb;
1078c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2;
1079c16cb8f2SBarry Smith   int             _One = 1,ncols,k;
1080c16cb8f2SBarry Smith   Scalar          _DOne = 1.0,*work,*workt,_DZero = 0.0;
108139b95ed1SBarry Smith 
1082c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1083c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
108439b95ed1SBarry Smith 
108539b95ed1SBarry Smith   idx   = a->j;
108639b95ed1SBarry Smith   v     = a->a;
108739b95ed1SBarry Smith   ii    = a->i;
108839b95ed1SBarry Smith 
108939b95ed1SBarry Smith 
1090119a934aSSatish Balay   if (!a->mult_work) {
10913b547af2SSatish Balay     k = PetscMax(a->m,a->n);
10922b3076dcSSatish Balay     a->mult_work = (Scalar *) PetscMalloc((k+1)*sizeof(Scalar));CHKPTRQ(a->mult_work);
1093119a934aSSatish Balay   }
1094119a934aSSatish Balay   work = a->mult_work;
1095119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1096119a934aSSatish Balay     n     = ii[1] - ii[0]; ii++;
1097119a934aSSatish Balay     ncols = n*bs;
1098119a934aSSatish Balay     workt = work;
1099119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1100119a934aSSatish Balay       xb = x + bs*(*idx++);
1101119a934aSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1102119a934aSSatish Balay       workt += bs;
1103119a934aSSatish Balay     }
11041a6a6d98SBarry Smith     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DZero,z,&_One);
1105119a934aSSatish Balay     v += n*bs2;
1106119a934aSSatish Balay     z += bs;
1107119a934aSSatish Balay   }
1108c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1109c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
11101a6a6d98SBarry Smith   PLogFlops(2*a->nz*bs2 - a->m);
1111bb42667fSSatish Balay   return 0;
1112bb42667fSSatish Balay }
1113bb42667fSSatish Balay 
11145615d1e5SSatish Balay #undef __FUNC__
11155615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_1"
1116f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_1(Mat A,Vec xx,Vec yy,Vec zz)
1117f44d3a6dSSatish Balay {
1118f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1119f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,sum;
1120c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
1121f44d3a6dSSatish Balay 
1122c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1123c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1124c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1125f44d3a6dSSatish Balay 
1126f44d3a6dSSatish Balay   idx   = a->j;
1127f44d3a6dSSatish Balay   v     = a->a;
1128f44d3a6dSSatish Balay   ii    = a->i;
1129f44d3a6dSSatish Balay 
1130f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1131f44d3a6dSSatish Balay     n    = ii[1] - ii[0]; ii++;
1132f44d3a6dSSatish Balay     sum  = y[i];
1133f44d3a6dSSatish Balay     while (n--) sum += *v++ * x[*idx++];
1134f44d3a6dSSatish Balay     z[i] = sum;
1135f44d3a6dSSatish Balay   }
1136c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1137c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1138c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1139f44d3a6dSSatish Balay   PLogFlops(2*a->nz);
1140f44d3a6dSSatish Balay   return 0;
1141f44d3a6dSSatish Balay }
1142f44d3a6dSSatish Balay 
11435615d1e5SSatish Balay #undef __FUNC__
11445615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_2"
1145f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_2(Mat A,Vec xx,Vec yy,Vec zz)
1146f44d3a6dSSatish Balay {
1147f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1148f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2;
1149f44d3a6dSSatish Balay   register Scalar x1,x2;
1150f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii;
1151c16cb8f2SBarry Smith   int             j,n;
1152f44d3a6dSSatish Balay 
1153c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1154c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1155c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1156f44d3a6dSSatish Balay 
1157f44d3a6dSSatish Balay   idx   = a->j;
1158f44d3a6dSSatish Balay   v     = a->a;
1159f44d3a6dSSatish Balay   ii    = a->i;
1160f44d3a6dSSatish Balay 
1161f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1162f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1163f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1];
1164f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1165f44d3a6dSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
1166f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
1167f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
1168f44d3a6dSSatish Balay       v += 4;
1169f44d3a6dSSatish Balay     }
1170f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2;
1171f44d3a6dSSatish Balay     z += 2; y += 2;
1172f44d3a6dSSatish Balay   }
1173c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1174c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1175c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1176f44d3a6dSSatish Balay   PLogFlops(4*a->nz);
1177f44d3a6dSSatish Balay   return 0;
1178f44d3a6dSSatish Balay }
1179f44d3a6dSSatish Balay 
11805615d1e5SSatish Balay #undef __FUNC__
11815615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_3"
1182f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_3(Mat A,Vec xx,Vec yy,Vec zz)
1183f44d3a6dSSatish Balay {
1184f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1185f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
1186c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1187f44d3a6dSSatish Balay 
1188c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1189c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1190c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1191f44d3a6dSSatish Balay 
1192f44d3a6dSSatish Balay   idx   = a->j;
1193f44d3a6dSSatish Balay   v     = a->a;
1194f44d3a6dSSatish Balay   ii    = a->i;
1195f44d3a6dSSatish Balay 
1196f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1197f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1198f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2];
1199f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1200f44d3a6dSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1201f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
1202f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
1203f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
1204f44d3a6dSSatish Balay       v += 9;
1205f44d3a6dSSatish Balay     }
1206f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3;
1207f44d3a6dSSatish Balay     z += 3; y += 3;
1208f44d3a6dSSatish Balay   }
1209c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1210c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1211c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1212f44d3a6dSSatish Balay   PLogFlops(18*a->nz);
1213f44d3a6dSSatish Balay   return 0;
1214f44d3a6dSSatish Balay }
1215f44d3a6dSSatish Balay 
12165615d1e5SSatish Balay #undef __FUNC__
12175615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_4"
1218f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_4(Mat A,Vec xx,Vec yy,Vec zz)
1219f44d3a6dSSatish Balay {
1220f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1221f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4;
1222f44d3a6dSSatish Balay   register Scalar x1,x2,x3,x4;
1223f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii;
1224c16cb8f2SBarry Smith   int             j,n;
1225f44d3a6dSSatish Balay 
1226c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1227c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1228c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1229f44d3a6dSSatish Balay 
1230f44d3a6dSSatish Balay   idx   = a->j;
1231f44d3a6dSSatish Balay   v     = a->a;
1232f44d3a6dSSatish Balay   ii    = a->i;
1233f44d3a6dSSatish Balay 
1234f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1235f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1236f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3];
1237f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1238f44d3a6dSSatish Balay       xb = x + 4*(*idx++);
1239f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1240f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
1241f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
1242f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
1243f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
1244f44d3a6dSSatish Balay       v += 16;
1245f44d3a6dSSatish Balay     }
1246f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
1247f44d3a6dSSatish Balay     z += 4; y += 4;
1248f44d3a6dSSatish Balay   }
1249c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1250c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1251c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1252f44d3a6dSSatish Balay   PLogFlops(32*a->nz);
1253f44d3a6dSSatish Balay   return 0;
1254f44d3a6dSSatish Balay }
1255f44d3a6dSSatish Balay 
12565615d1e5SSatish Balay #undef __FUNC__
12575615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_5"
1258f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_5(Mat A,Vec xx,Vec yy,Vec zz)
1259f44d3a6dSSatish Balay {
1260f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1261f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5;
1262f44d3a6dSSatish Balay   register Scalar x1,x2,x3,x4,x5;
1263c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1264f44d3a6dSSatish Balay 
1265c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1266c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1267c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1268f44d3a6dSSatish Balay 
1269f44d3a6dSSatish Balay   idx   = a->j;
1270f44d3a6dSSatish Balay   v     = a->a;
1271f44d3a6dSSatish Balay   ii    = a->i;
1272f44d3a6dSSatish Balay 
1273f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1274f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1275f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4];
1276f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1277f44d3a6dSSatish Balay       xb = x + 5*(*idx++);
1278f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1279f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1280f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1281f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1282f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1283f44d3a6dSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1284f44d3a6dSSatish Balay       v += 25;
1285f44d3a6dSSatish Balay     }
1286f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1287f44d3a6dSSatish Balay     z += 5; y += 5;
1288f44d3a6dSSatish Balay   }
1289c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1290c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1291c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1292f44d3a6dSSatish Balay   PLogFlops(50*a->nz);
1293f44d3a6dSSatish Balay   return 0;
1294f44d3a6dSSatish Balay }
1295f44d3a6dSSatish Balay 
12965615d1e5SSatish Balay #undef __FUNC__
129748e9ddb2SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_7"
129848e9ddb2SSatish Balay static int MatMultAdd_SeqBAIJ_7(Mat A,Vec xx,Vec yy,Vec zz)
129948e9ddb2SSatish Balay {
130048e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
130148e9ddb2SSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
130248e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
130348e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
130448e9ddb2SSatish Balay 
130548e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
130648e9ddb2SSatish Balay   VecGetArray_Fast(yy,y);
130748e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
130848e9ddb2SSatish Balay 
130948e9ddb2SSatish Balay   idx   = a->j;
131048e9ddb2SSatish Balay   v     = a->a;
131148e9ddb2SSatish Balay   ii    = a->i;
131248e9ddb2SSatish Balay 
131348e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
131448e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
131548e9ddb2SSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; sum6 = y[5]; sum7 = y[6];
131648e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
131748e9ddb2SSatish Balay       xb = x + 7*(*idx++);
131848e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
131948e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
132048e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
132148e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
132248e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
132348e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
132448e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
132548e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
132648e9ddb2SSatish Balay       v += 49;
132748e9ddb2SSatish Balay     }
132848e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
132948e9ddb2SSatish Balay     z += 7; y += 7;
133048e9ddb2SSatish Balay   }
133148e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
133248e9ddb2SSatish Balay   VecRestoreArray_Fast(yy,y);
133348e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
133448e9ddb2SSatish Balay   PLogFlops(98*a->nz);
133548e9ddb2SSatish Balay   return 0;
133648e9ddb2SSatish Balay }
133748e9ddb2SSatish Balay 
133848e9ddb2SSatish Balay 
133948e9ddb2SSatish Balay #undef __FUNC__
13405615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_N"
1341f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_N(Mat A,Vec xx,Vec yy,Vec zz)
1342f44d3a6dSSatish Balay {
1343f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1344f44d3a6dSSatish Balay   register Scalar *x,*z,*v,*xb;
1345f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2,ierr;
1346f44d3a6dSSatish Balay   int             _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1347f44d3a6dSSatish Balay 
1348f44d3a6dSSatish Balay   if ( xx != yy) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1349f44d3a6dSSatish Balay 
1350c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1351c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1352f44d3a6dSSatish Balay 
1353f44d3a6dSSatish Balay   idx   = a->j;
1354f44d3a6dSSatish Balay   v     = a->a;
1355f44d3a6dSSatish Balay   ii    = a->i;
1356f44d3a6dSSatish Balay 
1357f44d3a6dSSatish Balay 
1358f44d3a6dSSatish Balay   if (!a->mult_work) {
1359f44d3a6dSSatish Balay     k = PetscMax(a->m,a->n);
1360f44d3a6dSSatish Balay     a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));CHKPTRQ(a->mult_work);
1361f44d3a6dSSatish Balay   }
1362f44d3a6dSSatish Balay   work = a->mult_work;
1363f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1364f44d3a6dSSatish Balay     n     = ii[1] - ii[0]; ii++;
1365f44d3a6dSSatish Balay     ncols = n*bs;
1366f44d3a6dSSatish Balay     workt = work;
1367f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1368f44d3a6dSSatish Balay       xb = x + bs*(*idx++);
1369f44d3a6dSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1370f44d3a6dSSatish Balay       workt += bs;
1371f44d3a6dSSatish Balay     }
1372f44d3a6dSSatish Balay     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DOne,z,&_One);
1373f44d3a6dSSatish Balay     v += n*bs2;
1374f44d3a6dSSatish Balay     z += bs;
1375f44d3a6dSSatish Balay   }
1376c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1377c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1378f44d3a6dSSatish Balay   PLogFlops(2*a->nz*bs2 );
1379f44d3a6dSSatish Balay   return 0;
1380f44d3a6dSSatish Balay }
1381f44d3a6dSSatish Balay 
13825615d1e5SSatish Balay #undef __FUNC__
13835615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_SeqBAIJ"
13848f6be9afSLois Curfman McInnes int MatMultTrans_SeqBAIJ(Mat A,Vec xx,Vec zz)
1385bb42667fSSatish Balay {
1386bb42667fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
13871a6a6d98SBarry Smith   Scalar          *xg,*zg,*zb;
1388bb42667fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1389bb1453f0SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
13909df24120SSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1391119a934aSSatish Balay 
1392119a934aSSatish Balay 
139390f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
139490f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1395bb1453f0SSatish Balay   PetscMemzero(z,N*sizeof(Scalar));
1396bb42667fSSatish Balay 
1397119a934aSSatish Balay   idx   = a->j;
1398119a934aSSatish Balay   v     = a->a;
1399119a934aSSatish Balay   ii    = a->i;
1400119a934aSSatish Balay 
1401119a934aSSatish Balay   switch (bs) {
1402119a934aSSatish Balay   case 1:
1403119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1404119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1405119a934aSSatish Balay       xb = x + i; x1 = xb[0];
1406119a934aSSatish Balay       ib = idx + ai[i];
1407119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1408bb1453f0SSatish Balay         rval    = ib[j];
1409bb1453f0SSatish Balay         z[rval] += *v++ * x1;
1410119a934aSSatish Balay       }
1411119a934aSSatish Balay     }
1412119a934aSSatish Balay     break;
1413119a934aSSatish Balay   case 2:
1414119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1415119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1416119a934aSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1417119a934aSSatish Balay       ib = idx + ai[i];
1418119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1419119a934aSSatish Balay         rval      = ib[j]*2;
1420bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1421bb1453f0SSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1422119a934aSSatish Balay         v += 4;
1423119a934aSSatish Balay       }
1424119a934aSSatish Balay     }
1425119a934aSSatish Balay     break;
1426119a934aSSatish Balay   case 3:
1427119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1428119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1429119a934aSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1430119a934aSSatish Balay       ib = idx + ai[i];
1431119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1432119a934aSSatish Balay         rval      = ib[j]*3;
1433bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1434bb1453f0SSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1435bb1453f0SSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1436119a934aSSatish Balay         v += 9;
1437119a934aSSatish Balay       }
1438119a934aSSatish Balay     }
1439119a934aSSatish Balay     break;
1440119a934aSSatish Balay   case 4:
1441119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1442119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1443119a934aSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1444119a934aSSatish Balay       ib = idx + ai[i];
1445119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1446119a934aSSatish Balay         rval      = ib[j]*4;
1447bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1448bb1453f0SSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1449bb1453f0SSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1450bb1453f0SSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1451119a934aSSatish Balay         v += 16;
1452119a934aSSatish Balay       }
1453119a934aSSatish Balay     }
1454119a934aSSatish Balay     break;
1455119a934aSSatish Balay   case 5:
1456119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1457119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1458119a934aSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1459119a934aSSatish Balay       x4 = xb[3];   x5 = xb[4];
1460119a934aSSatish Balay       ib = idx + ai[i];
1461119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1462119a934aSSatish Balay         rval      = ib[j]*5;
1463bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1464bb1453f0SSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1465bb1453f0SSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1466bb1453f0SSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1467bb1453f0SSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1468119a934aSSatish Balay         v += 25;
1469119a934aSSatish Balay       }
1470119a934aSSatish Balay     }
1471119a934aSSatish Balay     break;
1472119a934aSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1473119a934aSSatish Balay     default: {
1474119a934aSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1475119a934aSSatish Balay       if (!a->mult_work) {
14763b547af2SSatish Balay         k = PetscMax(a->m,a->n);
1477bb42667fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1478119a934aSSatish Balay         CHKPTRQ(a->mult_work);
1479119a934aSSatish Balay       }
1480119a934aSSatish Balay       work = a->mult_work;
1481119a934aSSatish Balay       for ( i=0; i<mbs; i++ ) {
1482119a934aSSatish Balay         n     = ii[1] - ii[0]; ii++;
1483119a934aSSatish Balay         ncols = n*bs;
1484119a934aSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1485119a934aSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1486119a934aSSatish Balay         v += n*bs2;
1487119a934aSSatish Balay         x += bs;
1488119a934aSSatish Balay         workt = work;
1489119a934aSSatish Balay         for ( j=0; j<n; j++ ) {
1490119a934aSSatish Balay           zb = z + bs*(*idx++);
1491bb1453f0SSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1492119a934aSSatish Balay           workt += bs;
1493119a934aSSatish Balay         }
1494119a934aSSatish Balay       }
1495119a934aSSatish Balay     }
1496119a934aSSatish Balay   }
14970419e6cdSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
14980419e6cdSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1499faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2 - a->n);
1500faf6580fSSatish Balay   return 0;
1501faf6580fSSatish Balay }
15021c351548SSatish Balay 
15035615d1e5SSatish Balay #undef __FUNC__
15045615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_SeqBAIJ"
15058f6be9afSLois Curfman McInnes int MatMultTransAdd_SeqBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1506faf6580fSSatish Balay {
1507faf6580fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1508faf6580fSSatish Balay   Scalar          *xg,*zg,*zb;
1509faf6580fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1510faf6580fSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
1511faf6580fSSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1512faf6580fSSatish Balay 
1513faf6580fSSatish Balay 
1514faf6580fSSatish Balay 
151590f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
151690f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1517faf6580fSSatish Balay 
1518648c1d95SSatish Balay   if ( yy != zz ) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1519648c1d95SSatish Balay   else PetscMemzero(z,N*sizeof(Scalar));
1520648c1d95SSatish Balay 
1521faf6580fSSatish Balay 
1522faf6580fSSatish Balay   idx   = a->j;
1523faf6580fSSatish Balay   v     = a->a;
1524faf6580fSSatish Balay   ii    = a->i;
1525faf6580fSSatish Balay 
1526faf6580fSSatish Balay   switch (bs) {
1527faf6580fSSatish Balay   case 1:
1528faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1529faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1530faf6580fSSatish Balay       xb = x + i; x1 = xb[0];
1531faf6580fSSatish Balay       ib = idx + ai[i];
1532faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1533faf6580fSSatish Balay         rval    = ib[j];
1534faf6580fSSatish Balay         z[rval] += *v++ * x1;
1535faf6580fSSatish Balay       }
1536faf6580fSSatish Balay     }
1537faf6580fSSatish Balay     break;
1538faf6580fSSatish Balay   case 2:
1539faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1540faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1541faf6580fSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1542faf6580fSSatish Balay       ib = idx + ai[i];
1543faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1544faf6580fSSatish Balay         rval      = ib[j]*2;
1545faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1546faf6580fSSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1547faf6580fSSatish Balay         v += 4;
1548faf6580fSSatish Balay       }
1549faf6580fSSatish Balay     }
1550faf6580fSSatish Balay     break;
1551faf6580fSSatish Balay   case 3:
1552faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1553faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1554faf6580fSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1555faf6580fSSatish Balay       ib = idx + ai[i];
1556faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1557faf6580fSSatish Balay         rval      = ib[j]*3;
1558faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1559faf6580fSSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1560faf6580fSSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1561faf6580fSSatish Balay         v += 9;
1562faf6580fSSatish Balay       }
1563faf6580fSSatish Balay     }
1564faf6580fSSatish Balay     break;
1565faf6580fSSatish Balay   case 4:
1566faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1567faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1568faf6580fSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1569faf6580fSSatish Balay       ib = idx + ai[i];
1570faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1571faf6580fSSatish Balay         rval      = ib[j]*4;
1572faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1573faf6580fSSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1574faf6580fSSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1575faf6580fSSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1576faf6580fSSatish Balay         v += 16;
1577faf6580fSSatish Balay       }
1578faf6580fSSatish Balay     }
1579faf6580fSSatish Balay     break;
1580faf6580fSSatish Balay   case 5:
1581faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1582faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1583faf6580fSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1584faf6580fSSatish Balay       x4 = xb[3];   x5 = xb[4];
1585faf6580fSSatish Balay       ib = idx + ai[i];
1586faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1587faf6580fSSatish Balay         rval      = ib[j]*5;
1588faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1589faf6580fSSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1590faf6580fSSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1591faf6580fSSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1592faf6580fSSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1593faf6580fSSatish Balay         v += 25;
1594faf6580fSSatish Balay       }
1595faf6580fSSatish Balay     }
1596faf6580fSSatish Balay     break;
1597faf6580fSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1598faf6580fSSatish Balay     default: {
1599faf6580fSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1600faf6580fSSatish Balay       if (!a->mult_work) {
1601faf6580fSSatish Balay         k = PetscMax(a->m,a->n);
1602faf6580fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1603faf6580fSSatish Balay         CHKPTRQ(a->mult_work);
1604faf6580fSSatish Balay       }
1605faf6580fSSatish Balay       work = a->mult_work;
1606faf6580fSSatish Balay       for ( i=0; i<mbs; i++ ) {
1607faf6580fSSatish Balay         n     = ii[1] - ii[0]; ii++;
1608faf6580fSSatish Balay         ncols = n*bs;
1609faf6580fSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1610faf6580fSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1611faf6580fSSatish Balay         v += n*bs2;
1612faf6580fSSatish Balay         x += bs;
1613faf6580fSSatish Balay         workt = work;
1614faf6580fSSatish Balay         for ( j=0; j<n; j++ ) {
1615faf6580fSSatish Balay           zb = z + bs*(*idx++);
1616faf6580fSSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1617faf6580fSSatish Balay           workt += bs;
1618faf6580fSSatish Balay         }
1619faf6580fSSatish Balay       }
1620faf6580fSSatish Balay     }
1621faf6580fSSatish Balay   }
1622faf6580fSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
1623faf6580fSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1624faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2);
16252593348eSBarry Smith   return 0;
16262593348eSBarry Smith }
16272593348eSBarry Smith 
16285615d1e5SSatish Balay #undef __FUNC__
16295eea60f9SBarry Smith #define __FUNC__ "MatGetInfo_SeqBAIJ" /* ADIC Ignore */
16308f6be9afSLois Curfman McInnes int MatGetInfo_SeqBAIJ(Mat A,MatInfoType flag,MatInfo *info)
16312593348eSBarry Smith {
1632b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
16334e220ebcSLois Curfman McInnes 
16344e220ebcSLois Curfman McInnes   info->rows_global    = (double)a->m;
16354e220ebcSLois Curfman McInnes   info->columns_global = (double)a->n;
16364e220ebcSLois Curfman McInnes   info->rows_local     = (double)a->m;
16374e220ebcSLois Curfman McInnes   info->columns_local  = (double)a->n;
16384e220ebcSLois Curfman McInnes   info->block_size     = a->bs2;
16394e220ebcSLois Curfman McInnes   info->nz_allocated   = a->maxnz;
16404e220ebcSLois Curfman McInnes   info->nz_used        = a->bs2*a->nz;
16414e220ebcSLois Curfman McInnes   info->nz_unneeded    = (double)(info->nz_allocated - info->nz_used);
16424e220ebcSLois Curfman McInnes   /*  if (info->nz_unneeded != A->info.nz_unneeded)
16434e220ebcSLois Curfman McInnes     printf("space descrepancy: maxnz-nz = %d, nz_unneeded = %d\n",(int)info->nz_unneeded,(int)A->info.nz_unneeded); */
16444e220ebcSLois Curfman McInnes   info->assemblies   = A->num_ass;
16454e220ebcSLois Curfman McInnes   info->mallocs      = a->reallocs;
16464e220ebcSLois Curfman McInnes   info->memory       = A->mem;
16474e220ebcSLois Curfman McInnes   if (A->factor) {
16484e220ebcSLois Curfman McInnes     info->fill_ratio_given  = A->info.fill_ratio_given;
16494e220ebcSLois Curfman McInnes     info->fill_ratio_needed = A->info.fill_ratio_needed;
16504e220ebcSLois Curfman McInnes     info->factor_mallocs    = A->info.factor_mallocs;
16514e220ebcSLois Curfman McInnes   } else {
16524e220ebcSLois Curfman McInnes     info->fill_ratio_given  = 0;
16534e220ebcSLois Curfman McInnes     info->fill_ratio_needed = 0;
16544e220ebcSLois Curfman McInnes     info->factor_mallocs    = 0;
16554e220ebcSLois Curfman McInnes   }
16562593348eSBarry Smith   return 0;
16572593348eSBarry Smith }
16582593348eSBarry Smith 
16595615d1e5SSatish Balay #undef __FUNC__
16605615d1e5SSatish Balay #define __FUNC__ "MatEqual_SeqBAIJ"
16618f6be9afSLois Curfman McInnes int MatEqual_SeqBAIJ(Mat A,Mat B, PetscTruth* flg)
166291d316f6SSatish Balay {
166391d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
166491d316f6SSatish Balay 
1665e3372554SBarry Smith   if (B->type !=MATSEQBAIJ)SETERRQ(1,0,"Matrices must be same type");
166691d316f6SSatish Balay 
166791d316f6SSatish Balay   /* If the  matrix/block dimensions are not equal, or no of nonzeros or shift */
166891d316f6SSatish Balay   if ((a->m != b->m) || (a->n !=b->n) || (a->bs != b->bs)||
1669a7c10996SSatish Balay       (a->nz != b->nz)) {
167091d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
167191d316f6SSatish Balay   }
167291d316f6SSatish Balay 
167391d316f6SSatish Balay   /* if the a->i are the same */
167491d316f6SSatish Balay   if (PetscMemcmp(a->i,b->i, (a->mbs+1)*sizeof(int))) {
167591d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
167691d316f6SSatish Balay   }
167791d316f6SSatish Balay 
167891d316f6SSatish Balay   /* if a->j are the same */
167991d316f6SSatish Balay   if (PetscMemcmp(a->j,b->j,(a->nz)*sizeof(int))) {
168091d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
168191d316f6SSatish Balay   }
168291d316f6SSatish Balay 
168391d316f6SSatish Balay   /* if a->a are the same */
168491d316f6SSatish Balay   if (PetscMemcmp(a->a, b->a,(a->nz)*(a->bs)*(a->bs)*sizeof(Scalar))) {
168591d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
168691d316f6SSatish Balay   }
168791d316f6SSatish Balay   *flg = PETSC_TRUE;
168891d316f6SSatish Balay   return 0;
168991d316f6SSatish Balay 
169091d316f6SSatish Balay }
169191d316f6SSatish Balay 
16925615d1e5SSatish Balay #undef __FUNC__
16935615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_SeqBAIJ"
16948f6be9afSLois Curfman McInnes int MatGetDiagonal_SeqBAIJ(Mat A,Vec v)
169591d316f6SSatish Balay {
169691d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
16977e67e3f9SSatish Balay   int         i,j,k,n,row,bs,*ai,*aj,ambs,bs2;
169817e48fc4SSatish Balay   Scalar      *x, zero = 0.0,*aa,*aa_j;
169917e48fc4SSatish Balay 
17000513a670SBarry Smith   if (A->factor) SETERRQ(1,0,"Not for factored matrix");
170117e48fc4SSatish Balay   bs   = a->bs;
170217e48fc4SSatish Balay   aa   = a->a;
170317e48fc4SSatish Balay   ai   = a->i;
170417e48fc4SSatish Balay   aj   = a->j;
170517e48fc4SSatish Balay   ambs = a->mbs;
17069df24120SSatish Balay   bs2  = a->bs2;
170791d316f6SSatish Balay 
170891d316f6SSatish Balay   VecSet(&zero,v);
170990f02eecSBarry Smith   VecGetArray_Fast(v,x); VecGetLocalSize_Fast(v,n);
1710e3372554SBarry Smith   if (n != a->m) SETERRQ(1,0,"Nonconforming matrix and vector");
171117e48fc4SSatish Balay   for ( i=0; i<ambs; i++ ) {
171217e48fc4SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
171317e48fc4SSatish Balay       if (aj[j] == i) {
171417e48fc4SSatish Balay         row  = i*bs;
17157e67e3f9SSatish Balay         aa_j = aa+j*bs2;
17167e67e3f9SSatish Balay         for (k=0; k<bs2; k+=(bs+1),row++) x[row] = aa_j[k];
171791d316f6SSatish Balay         break;
171891d316f6SSatish Balay       }
171991d316f6SSatish Balay     }
172091d316f6SSatish Balay   }
172191d316f6SSatish Balay   return 0;
172291d316f6SSatish Balay }
172391d316f6SSatish Balay 
17245615d1e5SSatish Balay #undef __FUNC__
17255615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_SeqBAIJ"
17268f6be9afSLois Curfman McInnes int MatDiagonalScale_SeqBAIJ(Mat A,Vec ll,Vec rr)
17279867e207SSatish Balay {
17289867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
17299867e207SSatish Balay   Scalar      *l,*r,x,*v,*aa,*li,*ri;
17307e67e3f9SSatish Balay   int         i,j,k,lm,rn,M,m,n,*ai,*aj,mbs,tmp,bs,bs2;
17319867e207SSatish Balay 
17329867e207SSatish Balay   ai  = a->i;
17339867e207SSatish Balay   aj  = a->j;
17349867e207SSatish Balay   aa  = a->a;
17359867e207SSatish Balay   m   = a->m;
17369867e207SSatish Balay   n   = a->n;
17379867e207SSatish Balay   bs  = a->bs;
17389867e207SSatish Balay   mbs = a->mbs;
17399df24120SSatish Balay   bs2 = a->bs2;
17409867e207SSatish Balay   if (ll) {
174190f02eecSBarry Smith     VecGetArray_Fast(ll,l); VecGetLocalSize_Fast(ll,lm);
1742e3372554SBarry Smith     if (lm != m) SETERRQ(1,0,"Left scaling vector wrong length");
17439867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
17449867e207SSatish Balay       M  = ai[i+1] - ai[i];
17459867e207SSatish Balay       li = l + i*bs;
17467e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
17479867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
17487e67e3f9SSatish Balay         for ( k=0; k<bs2; k++ ) {
17499867e207SSatish Balay           (*v++) *= li[k%bs];
17509867e207SSatish Balay         }
17519867e207SSatish Balay       }
17529867e207SSatish Balay     }
17539867e207SSatish Balay   }
17549867e207SSatish Balay 
17559867e207SSatish Balay   if (rr) {
175690f02eecSBarry Smith     VecGetArray_Fast(rr,r); VecGetLocalSize_Fast(rr,rn);
1757e3372554SBarry Smith     if (rn != n) SETERRQ(1,0,"Right scaling vector wrong length");
17589867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
17599867e207SSatish Balay       M  = ai[i+1] - ai[i];
17607e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
17619867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
17629867e207SSatish Balay         ri = r + bs*aj[ai[i]+j];
17639867e207SSatish Balay         for ( k=0; k<bs; k++ ) {
17649867e207SSatish Balay           x = ri[k];
17659867e207SSatish Balay           for ( tmp=0; tmp<bs; tmp++ ) (*v++) *= x;
17669867e207SSatish Balay         }
17679867e207SSatish Balay       }
17689867e207SSatish Balay     }
17699867e207SSatish Balay   }
17709867e207SSatish Balay   return 0;
17719867e207SSatish Balay }
17729867e207SSatish Balay 
17739867e207SSatish Balay 
1774b6490206SBarry Smith extern int MatLUFactorSymbolic_SeqBAIJ(Mat,IS,IS,double,Mat*);
1775b6490206SBarry Smith extern int MatLUFactor_SeqBAIJ(Mat,IS,IS,double);
17762a38ea04SSatish Balay extern int MatIncreaseOverlap_SeqBAIJ(Mat,int,IS*,int);
1777736121d4SSatish Balay extern int MatGetSubMatrix_SeqBAIJ(Mat,IS,IS,MatGetSubMatrixCall,Mat*);
1778736121d4SSatish Balay extern int MatGetSubMatrices_SeqBAIJ(Mat,int,IS*,IS*,MatGetSubMatrixCall,Mat**);
17791a6a6d98SBarry Smith 
17801a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_N(Mat,Vec,Vec);
17811a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_1(Mat,Vec,Vec);
17821a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_2(Mat,Vec,Vec);
17831a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_3(Mat,Vec,Vec);
17841a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_4(Mat,Vec,Vec);
17851a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_5(Mat,Vec,Vec);
178648e9ddb2SSatish Balay extern int MatSolve_SeqBAIJ_7(Mat,Vec,Vec);
17871a6a6d98SBarry Smith 
17887fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_N(Mat,Mat*);
17897fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_1(Mat,Mat*);
17907fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_2(Mat,Mat*);
17917fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_3(Mat,Mat*);
17927fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_4(Mat,Mat*);
17937fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_5(Mat,Mat*);
17942593348eSBarry Smith 
17955615d1e5SSatish Balay #undef __FUNC__
17965615d1e5SSatish Balay #define __FUNC__ "MatNorm_SeqBAIJ"
17978f6be9afSLois Curfman McInnes int MatNorm_SeqBAIJ(Mat A,NormType type,double *norm)
17982593348eSBarry Smith {
1799b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
18002593348eSBarry Smith   Scalar      *v = a->a;
18012593348eSBarry Smith   double      sum = 0.0;
18029df24120SSatish Balay   int         i,nz=a->nz,bs2=a->bs2;
18032593348eSBarry Smith 
18042593348eSBarry Smith   if (type == NORM_FROBENIUS) {
18050419e6cdSSatish Balay     for (i=0; i< bs2*nz; i++ ) {
18062593348eSBarry Smith #if defined(PETSC_COMPLEX)
18072593348eSBarry Smith       sum += real(conj(*v)*(*v)); v++;
18082593348eSBarry Smith #else
18092593348eSBarry Smith       sum += (*v)*(*v); v++;
18102593348eSBarry Smith #endif
18112593348eSBarry Smith     }
18122593348eSBarry Smith     *norm = sqrt(sum);
18132593348eSBarry Smith   }
18142593348eSBarry Smith   else {
1815e3372554SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
18162593348eSBarry Smith   }
18172593348eSBarry Smith   return 0;
18182593348eSBarry Smith }
18192593348eSBarry Smith 
18202593348eSBarry Smith /*
18212593348eSBarry Smith      note: This can only work for identity for row and col. It would
18222593348eSBarry Smith    be good to check this and otherwise generate an error.
18232593348eSBarry Smith */
18245615d1e5SSatish Balay #undef __FUNC__
18255615d1e5SSatish Balay #define __FUNC__ "MatILUFactor_SeqBAIJ"
18268f6be9afSLois Curfman McInnes int MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,double efill,int fill)
18272593348eSBarry Smith {
1828b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
18292593348eSBarry Smith   Mat         outA;
1830de6a44a3SBarry Smith   int         ierr;
18312593348eSBarry Smith 
1832e3372554SBarry Smith   if (fill != 0) SETERRQ(1,0,"Only fill=0 supported");
18332593348eSBarry Smith 
18342593348eSBarry Smith   outA          = inA;
18352593348eSBarry Smith   inA->factor   = FACTOR_LU;
18362593348eSBarry Smith   a->row        = row;
18372593348eSBarry Smith   a->col        = col;
18382593348eSBarry Smith 
1839de6a44a3SBarry Smith   a->solve_work = (Scalar *) PetscMalloc((a->m+a->bs)*sizeof(Scalar));CHKPTRQ(a->solve_work);
18402593348eSBarry Smith 
18412593348eSBarry Smith   if (!a->diag) {
1842b6490206SBarry Smith     ierr = MatMarkDiag_SeqBAIJ(inA); CHKERRQ(ierr);
18432593348eSBarry Smith   }
18447fc0212eSBarry Smith   ierr = MatLUFactorNumeric(inA,&outA); CHKERRQ(ierr);
18452593348eSBarry Smith   return 0;
18462593348eSBarry Smith }
18472593348eSBarry Smith 
18485615d1e5SSatish Balay #undef __FUNC__
18495615d1e5SSatish Balay #define __FUNC__ "MatScale_SeqBAIJ"
18508f6be9afSLois Curfman McInnes int MatScale_SeqBAIJ(Scalar *alpha,Mat inA)
18512593348eSBarry Smith {
1852b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
18539df24120SSatish Balay   int         one = 1, totalnz = a->bs2*a->nz;
1854b6490206SBarry Smith   BLscal_( &totalnz, alpha, a->a, &one );
1855b6490206SBarry Smith   PLogFlops(totalnz);
18562593348eSBarry Smith   return 0;
18572593348eSBarry Smith }
18582593348eSBarry Smith 
18595615d1e5SSatish Balay #undef __FUNC__
18605615d1e5SSatish Balay #define __FUNC__ "MatGetValues_SeqBAIJ"
18618f6be9afSLois Curfman McInnes int MatGetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v)
18627e67e3f9SSatish Balay {
18637e67e3f9SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
18647e67e3f9SSatish Balay   int        *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j;
1865a7c10996SSatish Balay   int        *ai = a->i, *ailen = a->ilen;
18669df24120SSatish Balay   int        brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2;
18677e67e3f9SSatish Balay   Scalar     *ap, *aa = a->a, zero = 0.0;
18687e67e3f9SSatish Balay 
18697e67e3f9SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over rows */
18707e67e3f9SSatish Balay     row  = im[k]; brow = row/bs;
1871e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
1872e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
1873a7c10996SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
18747e67e3f9SSatish Balay     nrow = ailen[brow];
18757e67e3f9SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over columns */
1876e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
1877e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
1878a7c10996SSatish Balay       col  = in[l] ;
18797e67e3f9SSatish Balay       bcol = col/bs;
18807e67e3f9SSatish Balay       cidx = col%bs;
18817e67e3f9SSatish Balay       ridx = row%bs;
18827e67e3f9SSatish Balay       high = nrow;
18837e67e3f9SSatish Balay       low  = 0; /* assume unsorted */
18847e67e3f9SSatish Balay       while (high-low > 5) {
18857e67e3f9SSatish Balay         t = (low+high)/2;
18867e67e3f9SSatish Balay         if (rp[t] > bcol) high = t;
18877e67e3f9SSatish Balay         else             low  = t;
18887e67e3f9SSatish Balay       }
18897e67e3f9SSatish Balay       for ( i=low; i<high; i++ ) {
18907e67e3f9SSatish Balay         if (rp[i] > bcol) break;
18917e67e3f9SSatish Balay         if (rp[i] == bcol) {
18927e67e3f9SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
18937e67e3f9SSatish Balay           goto finished;
18947e67e3f9SSatish Balay         }
18957e67e3f9SSatish Balay       }
18967e67e3f9SSatish Balay       *v++ = zero;
18977e67e3f9SSatish Balay       finished:;
18987e67e3f9SSatish Balay     }
18997e67e3f9SSatish Balay   }
19007e67e3f9SSatish Balay   return 0;
19017e67e3f9SSatish Balay }
19027e67e3f9SSatish Balay 
19035615d1e5SSatish Balay #undef __FUNC__
19045eea60f9SBarry Smith #define __FUNC__ "MatGetBlockSize_SeqBAIJ" /* ADIC Ignore */
19058f6be9afSLois Curfman McInnes int MatGetBlockSize_SeqBAIJ(Mat mat, int *bs)
19065a838052SSatish Balay {
19075a838052SSatish Balay   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *) mat->data;
19085a838052SSatish Balay   *bs = baij->bs;
19095a838052SSatish Balay   return 0;
19105a838052SSatish Balay }
19115a838052SSatish Balay 
1912d9b7c43dSSatish Balay /* idx should be of length atlease bs */
19135615d1e5SSatish Balay #undef __FUNC__
19145615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ_Check_Block"
1915d9b7c43dSSatish Balay static int MatZeroRows_SeqBAIJ_Check_Block(int *idx, int bs, PetscTruth *flg)
1916d9b7c43dSSatish Balay {
1917d9b7c43dSSatish Balay   int i,row;
1918d9b7c43dSSatish Balay   row = idx[0];
1919d9b7c43dSSatish Balay   if (row%bs!=0) { *flg = PETSC_FALSE; return 0; }
1920d9b7c43dSSatish Balay 
1921d9b7c43dSSatish Balay   for ( i=1; i<bs; i++ ) {
1922d9b7c43dSSatish Balay     if (row+i != idx[i]) { *flg = PETSC_FALSE; return 0; }
1923d9b7c43dSSatish Balay   }
1924d9b7c43dSSatish Balay   *flg = PETSC_TRUE;
1925d9b7c43dSSatish Balay   return 0;
1926d9b7c43dSSatish Balay }
1927d9b7c43dSSatish Balay 
19285615d1e5SSatish Balay #undef __FUNC__
19295615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ"
19308f6be9afSLois Curfman McInnes int MatZeroRows_SeqBAIJ(Mat A,IS is, Scalar *diag)
1931d9b7c43dSSatish Balay {
1932d9b7c43dSSatish Balay   Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data;
1933d9b7c43dSSatish Balay   IS          is_local;
1934d9b7c43dSSatish Balay   int         ierr,i,j,count,m=baij->m,is_n,*is_idx,*rows,bs=baij->bs,bs2=baij->bs2;
1935d9b7c43dSSatish Balay   PetscTruth  flg;
1936d9b7c43dSSatish Balay   Scalar      zero = 0.0,*aa;
1937d9b7c43dSSatish Balay 
1938d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
1939d9b7c43dSSatish Balay   ierr = ISGetSize(is,&is_n);CHKERRQ(ierr);
1940d9b7c43dSSatish Balay   ierr = ISGetIndices(is,&is_idx);CHKERRQ(ierr);
1941537820f0SBarry Smith   ierr = ISCreateGeneral(A->comm,is_n,is_idx,&is_local); CHKERRQ(ierr);
1942d9b7c43dSSatish Balay   ierr = ISSort(is_local); CHKERRQ(ierr);
1943d9b7c43dSSatish Balay   ierr = ISGetIndices(is_local,&rows); CHKERRQ(ierr);
1944d9b7c43dSSatish Balay 
1945d9b7c43dSSatish Balay   i = 0;
1946d9b7c43dSSatish Balay   while (i < is_n) {
1947e3372554SBarry Smith     if (rows[i]<0 || rows[i]>m) SETERRQ(1,0,"row out of range");
1948d9b7c43dSSatish Balay     flg = PETSC_FALSE;
1949d9b7c43dSSatish Balay     if (i+bs <= is_n) {ierr = MatZeroRows_SeqBAIJ_Check_Block(rows+i,bs,&flg); CHKERRQ(ierr); }
1950d9b7c43dSSatish Balay     if (flg) { /* There exists a block of rows to be Zerowed */
1951d9b7c43dSSatish Balay       baij->ilen[rows[i]/bs] = 0;
1952d9b7c43dSSatish Balay       i += bs;
1953d9b7c43dSSatish Balay     } else { /* Zero out only the requested row */
1954d9b7c43dSSatish Balay       count = (baij->i[rows[i]/bs +1] - baij->i[rows[i]/bs])*bs;
1955d9b7c43dSSatish Balay       aa    = baij->a + baij->i[rows[i]/bs]*bs2 + (rows[i]%bs);
1956d9b7c43dSSatish Balay       for ( j=0; j<count; j++ ) {
1957d9b7c43dSSatish Balay         aa[0] = zero;
1958d9b7c43dSSatish Balay         aa+=bs;
1959d9b7c43dSSatish Balay       }
1960d9b7c43dSSatish Balay       i++;
1961d9b7c43dSSatish Balay     }
1962d9b7c43dSSatish Balay   }
1963d9b7c43dSSatish Balay   if (diag) {
1964d9b7c43dSSatish Balay     for ( j=0; j<is_n; j++ ) {
1965d9b7c43dSSatish Balay       ierr = (*A->ops.setvalues)(A,1,rows+j,1,rows+j,diag,INSERT_VALUES);CHKERRQ(ierr);
1966d9b7c43dSSatish Balay     }
1967d9b7c43dSSatish Balay   }
1968d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is,&is_idx); CHKERRQ(ierr);
1969d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is_local,&rows); CHKERRQ(ierr);
1970d9b7c43dSSatish Balay   ierr = ISDestroy(is_local); CHKERRQ(ierr);
19719a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1972d9b7c43dSSatish Balay 
1973d9b7c43dSSatish Balay   return 0;
1974d9b7c43dSSatish Balay }
19751c351548SSatish Balay 
19765615d1e5SSatish Balay #undef __FUNC__
19775eea60f9SBarry Smith #define __FUNC__ "MatPrintHelp_SeqBAIJ" /* ADIC Ignore */
1978ba4ca20aSSatish Balay int MatPrintHelp_SeqBAIJ(Mat A)
1979ba4ca20aSSatish Balay {
1980ba4ca20aSSatish Balay   static int called = 0;
1981ba4ca20aSSatish Balay   MPI_Comm   comm = A->comm;
1982ba4ca20aSSatish Balay 
1983ba4ca20aSSatish Balay   if (called) return 0; else called = 1;
1984ba4ca20aSSatish Balay   PetscPrintf(comm," Options for MATSEQBAIJ and MATMPIBAIJ matrix formats (the defaults):\n");
1985ba4ca20aSSatish Balay   PetscPrintf(comm,"  -mat_block_size <block_size>\n");
1986ba4ca20aSSatish Balay   return 0;
1987ba4ca20aSSatish Balay }
1988d9b7c43dSSatish Balay 
19892593348eSBarry Smith /* -------------------------------------------------------------------*/
1990cd0e1443SSatish Balay static struct _MatOps MatOps = {MatSetValues_SeqBAIJ,
19919867e207SSatish Balay        MatGetRow_SeqBAIJ,MatRestoreRow_SeqBAIJ,
1992f44d3a6dSSatish Balay        MatMult_SeqBAIJ_N,MatMultAdd_SeqBAIJ_N,
1993faf6580fSSatish Balay        MatMultTrans_SeqBAIJ,MatMultTransAdd_SeqBAIJ,
19941a6a6d98SBarry Smith        MatSolve_SeqBAIJ_N,0,
1995b6490206SBarry Smith        0,0,
1996de6a44a3SBarry Smith        MatLUFactor_SeqBAIJ,0,
1997b6490206SBarry Smith        0,
1998f2501298SSatish Balay        MatTranspose_SeqBAIJ,
199917e48fc4SSatish Balay        MatGetInfo_SeqBAIJ,MatEqual_SeqBAIJ,
20009867e207SSatish Balay        MatGetDiagonal_SeqBAIJ,MatDiagonalScale_SeqBAIJ,MatNorm_SeqBAIJ,
2001584200bdSSatish Balay        0,MatAssemblyEnd_SeqBAIJ,
2002b6490206SBarry Smith        0,
2003d9b7c43dSSatish Balay        MatSetOption_SeqBAIJ,MatZeroEntries_SeqBAIJ,MatZeroRows_SeqBAIJ,
20047fc0212eSBarry Smith        MatLUFactorSymbolic_SeqBAIJ,MatLUFactorNumeric_SeqBAIJ_N,0,0,
2005b6490206SBarry Smith        MatGetSize_SeqBAIJ,MatGetSize_SeqBAIJ,MatGetOwnershipRange_SeqBAIJ,
2006de6a44a3SBarry Smith        MatILUFactorSymbolic_SeqBAIJ,0,
2007d402145bSBarry Smith        0,0,
2008b6490206SBarry Smith        MatConvertSameType_SeqBAIJ,0,0,
2009b6490206SBarry Smith        MatILUFactor_SeqBAIJ,0,0,
2010af015674SSatish Balay        MatGetSubMatrices_SeqBAIJ,MatIncreaseOverlap_SeqBAIJ,
20117e67e3f9SSatish Balay        MatGetValues_SeqBAIJ,0,
2012ba4ca20aSSatish Balay        MatPrintHelp_SeqBAIJ,MatScale_SeqBAIJ,
20133b2fbd54SBarry Smith        0,0,0,MatGetBlockSize_SeqBAIJ,
20143b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
201592c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
201692c4ed94SBarry Smith        0,0,0,0,0,0,
201792c4ed94SBarry Smith        MatSetValuesBlocked_SeqBAIJ};
20182593348eSBarry Smith 
20195615d1e5SSatish Balay #undef __FUNC__
20205615d1e5SSatish Balay #define __FUNC__ "MatCreateSeqBAIJ"
20212593348eSBarry Smith /*@C
202244cd7ae7SLois Curfman McInnes    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
202344cd7ae7SLois Curfman McInnes    compressed row) format.  For good matrix assembly performance the
202444cd7ae7SLois Curfman McInnes    user should preallocate the matrix storage by setting the parameter nz
20252bd5e0b2SLois Curfman McInnes    (or the array nzz).  By setting these parameters accurately, performance
20262bd5e0b2SLois Curfman McInnes    during matrix assembly can be increased by more than a factor of 50.
20272593348eSBarry Smith 
20282593348eSBarry Smith    Input Parameters:
20292593348eSBarry Smith .  comm - MPI communicator, set to MPI_COMM_SELF
2030b6490206SBarry Smith .  bs - size of block
20312593348eSBarry Smith .  m - number of rows
20322593348eSBarry Smith .  n - number of columns
2033b6490206SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
20342bd5e0b2SLois Curfman McInnes .  nzz - array containing the number of block nonzeros in the various block rows
20352bd5e0b2SLois Curfman McInnes          (possibly different for each block row) or PETSC_NULL
20362593348eSBarry Smith 
20372593348eSBarry Smith    Output Parameter:
20382593348eSBarry Smith .  A - the matrix
20392593348eSBarry Smith 
20400513a670SBarry Smith    Options Database Keys:
20410513a670SBarry Smith $    -mat_no_unroll - uses code that does not unroll the loops in the
20420513a670SBarry Smith $                     block calculations (much solver)
20430513a670SBarry Smith $    -mat_block_size - size of the blocks to use
20440513a670SBarry Smith 
20452593348eSBarry Smith    Notes:
204644cd7ae7SLois Curfman McInnes    The block AIJ format is fully compatible with standard Fortran 77
20472593348eSBarry Smith    storage.  That is, the stored row and column indices can begin at
204844cd7ae7SLois Curfman McInnes    either one (as in Fortran) or zero.  See the users' manual for details.
20492593348eSBarry Smith 
20502593348eSBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
20512593348eSBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
20522593348eSBarry Smith    allocation.  For additional details, see the users manual chapter on
20536da5968aSLois Curfman McInnes    matrices.
20542593348eSBarry Smith 
205544cd7ae7SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
20562593348eSBarry Smith @*/
2057b6490206SBarry Smith int MatCreateSeqBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,int *nnz, Mat *A)
20582593348eSBarry Smith {
20592593348eSBarry Smith   Mat         B;
2060b6490206SBarry Smith   Mat_SeqBAIJ *b;
20613b2fbd54SBarry Smith   int         i,len,ierr,flg,mbs=m/bs,nbs=n/bs,bs2=bs*bs,size;
20623b2fbd54SBarry Smith 
20633b2fbd54SBarry Smith   MPI_Comm_size(comm,&size);
2064e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"Comm must be of size 1");
2065b6490206SBarry Smith 
20660513a670SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,&flg);CHKERRQ(ierr);
20670513a670SBarry Smith 
2068f2501298SSatish Balay   if (mbs*bs!=m || nbs*bs!=n)
2069e3372554SBarry Smith     SETERRQ(1,0,"Number rows, cols must be divisible by blocksize");
20702593348eSBarry Smith 
20712593348eSBarry Smith   *A = 0;
2072b6490206SBarry Smith   PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATSEQBAIJ,comm);
20732593348eSBarry Smith   PLogObjectCreate(B);
2074b6490206SBarry Smith   B->data = (void *) (b = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(b);
207544cd7ae7SLois Curfman McInnes   PetscMemzero(b,sizeof(Mat_SeqBAIJ));
20762593348eSBarry Smith   PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps));
20771a6a6d98SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_no_unroll",&flg); CHKERRQ(ierr);
20781a6a6d98SBarry Smith   if (!flg) {
20797fc0212eSBarry Smith     switch (bs) {
20807fc0212eSBarry Smith     case 1:
20817fc0212eSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1;
20821a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_1;
208339b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_1;
2084f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_1;
20857fc0212eSBarry Smith       break;
20864eeb42bcSBarry Smith     case 2:
20874eeb42bcSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2;
20881a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_2;
208939b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_2;
2090f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_2;
20916d84be18SBarry Smith       break;
2092f327dd97SBarry Smith     case 3:
2093f327dd97SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3;
20941a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_3;
209539b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_3;
2096f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_3;
20974eeb42bcSBarry Smith       break;
20986d84be18SBarry Smith     case 4:
20996d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4;
21001a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_4;
210139b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_4;
2102f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_4;
21036d84be18SBarry Smith       break;
21046d84be18SBarry Smith     case 5:
21056d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5;
21061a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_5;
210739b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_5;
2108f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_5;
21096d84be18SBarry Smith       break;
211048e9ddb2SSatish Balay     case 7:
211148e9ddb2SSatish Balay       B->ops.mult            = MatMult_SeqBAIJ_7;
211248e9ddb2SSatish Balay       B->ops.solve           = MatSolve_SeqBAIJ_7;
211348e9ddb2SSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_7;
211448e9ddb2SSatish Balay       break;
21157fc0212eSBarry Smith     }
21161a6a6d98SBarry Smith   }
2117b6490206SBarry Smith   B->destroy          = MatDestroy_SeqBAIJ;
2118b6490206SBarry Smith   B->view             = MatView_SeqBAIJ;
21192593348eSBarry Smith   B->factor           = 0;
21202593348eSBarry Smith   B->lupivotthreshold = 1.0;
212190f02eecSBarry Smith   B->mapping          = 0;
21222593348eSBarry Smith   b->row              = 0;
21232593348eSBarry Smith   b->col              = 0;
21242593348eSBarry Smith   b->reallocs         = 0;
21252593348eSBarry Smith 
212644cd7ae7SLois Curfman McInnes   b->m       = m; B->m = m; B->M = m;
212744cd7ae7SLois Curfman McInnes   b->n       = n; B->n = n; B->N = n;
2128b6490206SBarry Smith   b->mbs     = mbs;
2129f2501298SSatish Balay   b->nbs     = nbs;
2130b6490206SBarry Smith   b->imax    = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(b->imax);
21312593348eSBarry Smith   if (nnz == PETSC_NULL) {
2132119a934aSSatish Balay     if (nz == PETSC_DEFAULT) nz = 5;
21332593348eSBarry Smith     else if (nz <= 0)        nz = 1;
2134b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) b->imax[i] = nz;
2135b6490206SBarry Smith     nz = nz*mbs;
21362593348eSBarry Smith   }
21372593348eSBarry Smith   else {
21382593348eSBarry Smith     nz = 0;
2139b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {b->imax[i] = nnz[i]; nz += nnz[i];}
21402593348eSBarry Smith   }
21412593348eSBarry Smith 
21422593348eSBarry Smith   /* allocate the matrix space */
21437e67e3f9SSatish Balay   len   = nz*sizeof(int) + nz*bs2*sizeof(Scalar) + (b->m+1)*sizeof(int);
21442593348eSBarry Smith   b->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(b->a);
21457e67e3f9SSatish Balay   PetscMemzero(b->a,nz*bs2*sizeof(Scalar));
21467e67e3f9SSatish Balay   b->j  = (int *) (b->a + nz*bs2);
21472593348eSBarry Smith   PetscMemzero(b->j,nz*sizeof(int));
21482593348eSBarry Smith   b->i  = b->j + nz;
21492593348eSBarry Smith   b->singlemalloc = 1;
21502593348eSBarry Smith 
2151de6a44a3SBarry Smith   b->i[0] = 0;
2152b6490206SBarry Smith   for (i=1; i<mbs+1; i++) {
21532593348eSBarry Smith     b->i[i] = b->i[i-1] + b->imax[i-1];
21542593348eSBarry Smith   }
21552593348eSBarry Smith 
2156b6490206SBarry Smith   /* b->ilen will count nonzeros in each block row so far. */
2157b6490206SBarry Smith   b->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int));
2158b6490206SBarry Smith   PLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_SeqBAIJ));
2159b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) { b->ilen[i] = 0;}
21602593348eSBarry Smith 
2161b6490206SBarry Smith   b->bs               = bs;
21629df24120SSatish Balay   b->bs2              = bs2;
2163b6490206SBarry Smith   b->mbs              = mbs;
21642593348eSBarry Smith   b->nz               = 0;
216518e7b8e4SLois Curfman McInnes   b->maxnz            = nz*bs2;
21662593348eSBarry Smith   b->sorted           = 0;
21672593348eSBarry Smith   b->roworiented      = 1;
21682593348eSBarry Smith   b->nonew            = 0;
21692593348eSBarry Smith   b->diag             = 0;
21702593348eSBarry Smith   b->solve_work       = 0;
2171de6a44a3SBarry Smith   b->mult_work        = 0;
21722593348eSBarry Smith   b->spptr            = 0;
21734e220ebcSLois Curfman McInnes   B->info.nz_unneeded = (double)b->maxnz;
21744e220ebcSLois Curfman McInnes 
21752593348eSBarry Smith   *A = B;
21762593348eSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help", &flg); CHKERRQ(ierr);
21772593348eSBarry Smith   if (flg) {ierr = MatPrintHelp(B); CHKERRQ(ierr); }
21782593348eSBarry Smith   return 0;
21792593348eSBarry Smith }
21802593348eSBarry Smith 
21815615d1e5SSatish Balay #undef __FUNC__
21825615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_SeqBAIJ"
2183b6490206SBarry Smith int MatConvertSameType_SeqBAIJ(Mat A,Mat *B,int cpvalues)
21842593348eSBarry Smith {
21852593348eSBarry Smith   Mat         C;
2186b6490206SBarry Smith   Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ *) A->data;
21879df24120SSatish Balay   int         i,len, mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
2188de6a44a3SBarry Smith 
2189e3372554SBarry Smith   if (a->i[mbs] != nz) SETERRQ(1,0,"Corrupt matrix");
21902593348eSBarry Smith 
21912593348eSBarry Smith   *B = 0;
2192b6490206SBarry Smith   PetscHeaderCreate(C,_Mat,MAT_COOKIE,MATSEQBAIJ,A->comm);
21932593348eSBarry Smith   PLogObjectCreate(C);
2194b6490206SBarry Smith   C->data       = (void *) (c = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(c);
21952593348eSBarry Smith   PetscMemcpy(&C->ops,&A->ops,sizeof(struct _MatOps));
2196b6490206SBarry Smith   C->destroy    = MatDestroy_SeqBAIJ;
2197b6490206SBarry Smith   C->view       = MatView_SeqBAIJ;
21982593348eSBarry Smith   C->factor     = A->factor;
21992593348eSBarry Smith   c->row        = 0;
22002593348eSBarry Smith   c->col        = 0;
22012593348eSBarry Smith   C->assembled  = PETSC_TRUE;
22022593348eSBarry Smith 
220344cd7ae7SLois Curfman McInnes   c->m = C->m   = a->m;
220444cd7ae7SLois Curfman McInnes   c->n = C->n   = a->n;
220544cd7ae7SLois Curfman McInnes   C->M          = a->m;
220644cd7ae7SLois Curfman McInnes   C->N          = a->n;
220744cd7ae7SLois Curfman McInnes 
2208b6490206SBarry Smith   c->bs         = a->bs;
22099df24120SSatish Balay   c->bs2        = a->bs2;
2210b6490206SBarry Smith   c->mbs        = a->mbs;
2211b6490206SBarry Smith   c->nbs        = a->nbs;
22122593348eSBarry Smith 
2213b6490206SBarry Smith   c->imax       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->imax);
2214b6490206SBarry Smith   c->ilen       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->ilen);
2215b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
22162593348eSBarry Smith     c->imax[i] = a->imax[i];
22172593348eSBarry Smith     c->ilen[i] = a->ilen[i];
22182593348eSBarry Smith   }
22192593348eSBarry Smith 
22202593348eSBarry Smith   /* allocate the matrix space */
22212593348eSBarry Smith   c->singlemalloc = 1;
22227e67e3f9SSatish Balay   len   = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(Scalar) + sizeof(int));
22232593348eSBarry Smith   c->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(c->a);
22247e67e3f9SSatish Balay   c->j  = (int *) (c->a + nz*bs2);
2225de6a44a3SBarry Smith   c->i  = c->j + nz;
2226b6490206SBarry Smith   PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int));
2227b6490206SBarry Smith   if (mbs > 0) {
2228de6a44a3SBarry Smith     PetscMemcpy(c->j,a->j,nz*sizeof(int));
22292593348eSBarry Smith     if (cpvalues == COPY_VALUES) {
22307e67e3f9SSatish Balay       PetscMemcpy(c->a,a->a,bs2*nz*sizeof(Scalar));
22312593348eSBarry Smith     }
22322593348eSBarry Smith   }
22332593348eSBarry Smith 
2234b6490206SBarry Smith   PLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_SeqBAIJ));
22352593348eSBarry Smith   c->sorted      = a->sorted;
22362593348eSBarry Smith   c->roworiented = a->roworiented;
22372593348eSBarry Smith   c->nonew       = a->nonew;
22382593348eSBarry Smith 
22392593348eSBarry Smith   if (a->diag) {
2240b6490206SBarry Smith     c->diag = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(c->diag);
2241b6490206SBarry Smith     PLogObjectMemory(C,(mbs+1)*sizeof(int));
2242b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {
22432593348eSBarry Smith       c->diag[i] = a->diag[i];
22442593348eSBarry Smith     }
22452593348eSBarry Smith   }
22462593348eSBarry Smith   else c->diag          = 0;
22472593348eSBarry Smith   c->nz                 = a->nz;
22482593348eSBarry Smith   c->maxnz              = a->maxnz;
22492593348eSBarry Smith   c->solve_work         = 0;
22502593348eSBarry Smith   c->spptr              = 0;      /* Dangerous -I'm throwing away a->spptr */
22517fc0212eSBarry Smith   c->mult_work          = 0;
22522593348eSBarry Smith   *B = C;
22532593348eSBarry Smith   return 0;
22542593348eSBarry Smith }
22552593348eSBarry Smith 
22565615d1e5SSatish Balay #undef __FUNC__
22575615d1e5SSatish Balay #define __FUNC__ "MatLoad_SeqBAIJ"
225819bcc07fSBarry Smith int MatLoad_SeqBAIJ(Viewer viewer,MatType type,Mat *A)
22592593348eSBarry Smith {
2260b6490206SBarry Smith   Mat_SeqBAIJ  *a;
22612593348eSBarry Smith   Mat          B;
2262de6a44a3SBarry Smith   int          i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1,flg;
2263b6490206SBarry Smith   int          *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
226435aab85fSBarry Smith   int          kmax,jcount,block,idx,point,nzcountb,extra_rows;
2265a7c10996SSatish Balay   int          *masked, nmask,tmp,bs2,ishift;
2266b6490206SBarry Smith   Scalar       *aa;
226719bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject) viewer)->comm;
22682593348eSBarry Smith 
22691a6a6d98SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
2270de6a44a3SBarry Smith   bs2  = bs*bs;
2271b6490206SBarry Smith 
22722593348eSBarry Smith   MPI_Comm_size(comm,&size);
2273e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"view must have one processor");
227490ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
227577c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,header,4,BINARY_INT); CHKERRQ(ierr);
2276e3372554SBarry Smith   if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not Mat object");
22772593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
22782593348eSBarry Smith 
2279e3372554SBarry Smith   if (M != N) SETERRQ(1,0,"Can only do square matrices");
228035aab85fSBarry Smith 
228135aab85fSBarry Smith   /*
228235aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
228335aab85fSBarry Smith     divisible by the blocksize
228435aab85fSBarry Smith   */
2285b6490206SBarry Smith   mbs        = M/bs;
228635aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
228735aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
228835aab85fSBarry Smith   else                  mbs++;
228935aab85fSBarry Smith   if (extra_rows) {
2290537820f0SBarry Smith     PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize\n");
229135aab85fSBarry Smith   }
2292b6490206SBarry Smith 
22932593348eSBarry Smith   /* read in row lengths */
229435aab85fSBarry Smith   rowlengths = (int*) PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths);
229577c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr);
229635aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
22972593348eSBarry Smith 
2298b6490206SBarry Smith   /* read in column indices */
229935aab85fSBarry Smith   jj = (int*) PetscMalloc( (nz+extra_rows)*sizeof(int) ); CHKPTRQ(jj);
230077c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,BINARY_INT); CHKERRQ(ierr);
230135aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) jj[nz+i] = M+i;
2302b6490206SBarry Smith 
2303b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
2304b6490206SBarry Smith   browlengths = (int *) PetscMalloc(mbs*sizeof(int));CHKPTRQ(browlengths);
2305b6490206SBarry Smith   PetscMemzero(browlengths,mbs*sizeof(int));
230635aab85fSBarry Smith   mask   = (int *) PetscMalloc( 2*mbs*sizeof(int) ); CHKPTRQ(mask);
230735aab85fSBarry Smith   PetscMemzero(mask,mbs*sizeof(int));
230835aab85fSBarry Smith   masked = mask + mbs;
2309b6490206SBarry Smith   rowcount = 0; nzcount = 0;
2310b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
231135aab85fSBarry Smith     nmask = 0;
2312b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2313b6490206SBarry Smith       kmax = rowlengths[rowcount];
2314b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
231535aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
231635aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
2317b6490206SBarry Smith       }
2318b6490206SBarry Smith       rowcount++;
2319b6490206SBarry Smith     }
232035aab85fSBarry Smith     browlengths[i] += nmask;
232135aab85fSBarry Smith     /* zero out the mask elements we set */
232235aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2323b6490206SBarry Smith   }
2324b6490206SBarry Smith 
23252593348eSBarry Smith   /* create our matrix */
232635aab85fSBarry Smith   ierr = MatCreateSeqBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,browlengths,A);
232735aab85fSBarry Smith          CHKERRQ(ierr);
23282593348eSBarry Smith   B = *A;
2329b6490206SBarry Smith   a = (Mat_SeqBAIJ *) B->data;
23302593348eSBarry Smith 
23312593348eSBarry Smith   /* set matrix "i" values */
2332de6a44a3SBarry Smith   a->i[0] = 0;
2333b6490206SBarry Smith   for ( i=1; i<= mbs; i++ ) {
2334b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
2335b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
23362593348eSBarry Smith   }
2337b6490206SBarry Smith   a->nz         = 0;
2338b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) a->nz += browlengths[i];
23392593348eSBarry Smith 
2340b6490206SBarry Smith   /* read in nonzero values */
234135aab85fSBarry Smith   aa = (Scalar *) PetscMalloc((nz+extra_rows)*sizeof(Scalar));CHKPTRQ(aa);
234277c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,BINARY_SCALAR); CHKERRQ(ierr);
234335aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) aa[nz+i] = 1.0;
2344b6490206SBarry Smith 
2345b6490206SBarry Smith   /* set "a" and "j" values into matrix */
2346b6490206SBarry Smith   nzcount = 0; jcount = 0;
2347b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
2348b6490206SBarry Smith     nzcountb = nzcount;
234935aab85fSBarry Smith     nmask    = 0;
2350b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2351b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2352b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
235335aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
235435aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
2355b6490206SBarry Smith       }
2356b6490206SBarry Smith       rowcount++;
2357b6490206SBarry Smith     }
2358de6a44a3SBarry Smith     /* sort the masked values */
235977c4ece6SBarry Smith     PetscSortInt(nmask,masked);
2360de6a44a3SBarry Smith 
2361b6490206SBarry Smith     /* set "j" values into matrix */
2362b6490206SBarry Smith     maskcount = 1;
236335aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) {
236435aab85fSBarry Smith       a->j[jcount++]  = masked[j];
2365de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
2366b6490206SBarry Smith     }
2367b6490206SBarry Smith     /* set "a" values into matrix */
2368de6a44a3SBarry Smith     ishift = bs2*a->i[i];
2369b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2370b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2371b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
2372de6a44a3SBarry Smith         tmp    = jj[nzcountb]/bs ;
2373de6a44a3SBarry Smith         block  = mask[tmp] - 1;
2374de6a44a3SBarry Smith         point  = jj[nzcountb] - bs*tmp;
2375de6a44a3SBarry Smith         idx    = ishift + bs2*block + j + bs*point;
2376b6490206SBarry Smith         a->a[idx] = aa[nzcountb++];
2377b6490206SBarry Smith       }
2378b6490206SBarry Smith     }
237935aab85fSBarry Smith     /* zero out the mask elements we set */
238035aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2381b6490206SBarry Smith   }
2382e3372554SBarry Smith   if (jcount != a->nz) SETERRQ(1,0,"Error bad binary matrix");
2383b6490206SBarry Smith 
2384b6490206SBarry Smith   PetscFree(rowlengths);
2385b6490206SBarry Smith   PetscFree(browlengths);
2386b6490206SBarry Smith   PetscFree(aa);
2387b6490206SBarry Smith   PetscFree(jj);
2388b6490206SBarry Smith   PetscFree(mask);
2389b6490206SBarry Smith 
2390b6490206SBarry Smith   B->assembled = PETSC_TRUE;
2391de6a44a3SBarry Smith 
2392de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_info",&flg); CHKERRQ(ierr);
2393de6a44a3SBarry Smith   if (flg) {
239419bcc07fSBarry Smith     Viewer tviewer;
239519bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2396639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO,0);CHKERRQ(ierr);
239719bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
239819bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2399de6a44a3SBarry Smith   }
2400de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_info_detailed",&flg);CHKERRQ(ierr);
2401de6a44a3SBarry Smith   if (flg) {
240219bcc07fSBarry Smith     Viewer tviewer;
240319bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2404639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO_LONG,0);CHKERRQ(ierr);
240519bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
240619bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2407de6a44a3SBarry Smith   }
2408de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view",&flg); CHKERRQ(ierr);
2409de6a44a3SBarry Smith   if (flg) {
241019bcc07fSBarry Smith     Viewer tviewer;
241119bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
241219bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
241319bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2414de6a44a3SBarry Smith   }
2415de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_matlab",&flg); CHKERRQ(ierr);
2416de6a44a3SBarry Smith   if (flg) {
241719bcc07fSBarry Smith     Viewer tviewer;
241819bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2419639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_MATLAB,"M");CHKERRQ(ierr);
242019bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
242119bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2422de6a44a3SBarry Smith   }
2423de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_draw",&flg); CHKERRQ(ierr);
2424de6a44a3SBarry Smith   if (flg) {
242519bcc07fSBarry Smith     Viewer tviewer;
242619bcc07fSBarry Smith     ierr = ViewerDrawOpenX(B->comm,0,0,0,0,300,300,&tviewer); CHKERRQ(ierr);
242719bcc07fSBarry Smith     ierr = MatView(B,(Viewer)tviewer); CHKERRQ(ierr);
242819bcc07fSBarry Smith     ierr = ViewerFlush(tviewer); CHKERRQ(ierr);
242919bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2430de6a44a3SBarry Smith   }
24312593348eSBarry Smith   return 0;
24322593348eSBarry Smith }
24332593348eSBarry Smith 
24342593348eSBarry Smith 
24352593348eSBarry Smith 
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