12593348eSBarry Smith #ifndef lint 2*2b362799SSatish Balay static char vcid[] = "$Id: baij.c,v 1.95 1997/03/26 01:36:13 bsmith Exp balay $"; 32593348eSBarry Smith #endif 42593348eSBarry Smith 52593348eSBarry Smith /* 6b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 72593348eSBarry Smith matrix storage format. 82593348eSBarry Smith */ 93369ce9aSBarry Smith 103369ce9aSBarry Smith #include "pinclude/pviewer.h" 113369ce9aSBarry Smith #include "sys.h" 1270f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h" 131a6a6d98SBarry Smith #include "src/vec/vecimpl.h" 141a6a6d98SBarry Smith #include "src/inline/spops.h" 152593348eSBarry Smith #include "petsc.h" 163b547af2SSatish Balay 172593348eSBarry Smith 18de6a44a3SBarry Smith /* 19de6a44a3SBarry Smith Adds diagonal pointers to sparse matrix structure. 20de6a44a3SBarry Smith */ 21de6a44a3SBarry Smith 225615d1e5SSatish Balay #undef __FUNC__ 235615d1e5SSatish Balay #define __FUNC__ "MatMarkDiag_SeqBAIJ" 24de6a44a3SBarry Smith int MatMarkDiag_SeqBAIJ(Mat A) 25de6a44a3SBarry Smith { 26de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 277fc0212eSBarry Smith int i,j, *diag, m = a->mbs; 28de6a44a3SBarry Smith 29de6a44a3SBarry Smith diag = (int *) PetscMalloc( (m+1)*sizeof(int)); CHKPTRQ(diag); 30de6a44a3SBarry Smith PLogObjectMemory(A,(m+1)*sizeof(int)); 317fc0212eSBarry Smith for ( i=0; i<m; i++ ) { 32de6a44a3SBarry Smith for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 33de6a44a3SBarry Smith if (a->j[j] == i) { 34de6a44a3SBarry Smith diag[i] = j; 35de6a44a3SBarry Smith break; 36de6a44a3SBarry Smith } 37de6a44a3SBarry Smith } 38de6a44a3SBarry Smith } 39de6a44a3SBarry Smith a->diag = diag; 40de6a44a3SBarry Smith return 0; 41de6a44a3SBarry Smith } 422593348eSBarry Smith 432593348eSBarry Smith 443b2fbd54SBarry Smith extern int MatToSymmetricIJ_SeqAIJ(int,int*,int*,int,int,int**,int**); 453b2fbd54SBarry Smith 465615d1e5SSatish Balay #undef __FUNC__ 475615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_SeqBAIJ" 483b2fbd54SBarry Smith static int MatGetRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja, 493b2fbd54SBarry Smith PetscTruth *done) 503b2fbd54SBarry Smith { 513b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 523b2fbd54SBarry Smith int ierr, n = a->mbs,i; 533b2fbd54SBarry Smith 543b2fbd54SBarry Smith *nn = n; 553b2fbd54SBarry Smith if (!ia) return 0; 563b2fbd54SBarry Smith if (symmetric) { 573b2fbd54SBarry Smith ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,oshift,ia,ja);CHKERRQ(ierr); 583b2fbd54SBarry Smith } else if (oshift == 1) { 593b2fbd54SBarry Smith /* temporarily add 1 to i and j indices */ 603b2fbd54SBarry Smith int nz = a->i[n] + 1; 613b2fbd54SBarry Smith for ( i=0; i<nz; i++ ) a->j[i]++; 623b2fbd54SBarry Smith for ( i=0; i<n+1; i++ ) a->i[i]++; 633b2fbd54SBarry Smith *ia = a->i; *ja = a->j; 643b2fbd54SBarry Smith } else { 653b2fbd54SBarry Smith *ia = a->i; *ja = a->j; 663b2fbd54SBarry Smith } 673b2fbd54SBarry Smith 683b2fbd54SBarry Smith return 0; 693b2fbd54SBarry Smith } 703b2fbd54SBarry Smith 715615d1e5SSatish Balay #undef __FUNC__ 725eea60f9SBarry Smith #define __FUNC__ "MatRestoreRowIJ_SeqBAIJ" /* ADIC Ignore */ 733b2fbd54SBarry Smith static int MatRestoreRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja, 743b2fbd54SBarry Smith PetscTruth *done) 753b2fbd54SBarry Smith { 763b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 773b2fbd54SBarry Smith int i,n = a->mbs; 783b2fbd54SBarry Smith 793b2fbd54SBarry Smith if (!ia) return 0; 803b2fbd54SBarry Smith if (symmetric) { 813b2fbd54SBarry Smith PetscFree(*ia); 823b2fbd54SBarry Smith PetscFree(*ja); 83af5da2bfSBarry Smith } else if (oshift == 1) { 843b2fbd54SBarry Smith int nz = a->i[n]; 853b2fbd54SBarry Smith for ( i=0; i<nz; i++ ) a->j[i]--; 863b2fbd54SBarry Smith for ( i=0; i<n+1; i++ ) a->i[i]--; 873b2fbd54SBarry Smith } 883b2fbd54SBarry Smith return 0; 893b2fbd54SBarry Smith } 903b2fbd54SBarry Smith 913b2fbd54SBarry Smith 925615d1e5SSatish Balay #undef __FUNC__ 935eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Binary" /* ADIC Ignore */ 94b6490206SBarry Smith static int MatView_SeqBAIJ_Binary(Mat A,Viewer viewer) 952593348eSBarry Smith { 96b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 979df24120SSatish Balay int i, fd, *col_lens, ierr, bs = a->bs,count,*jj,j,k,l,bs2=a->bs2; 98b6490206SBarry Smith Scalar *aa; 992593348eSBarry Smith 10090ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 1012593348eSBarry Smith col_lens = (int *) PetscMalloc((4+a->m)*sizeof(int));CHKPTRQ(col_lens); 1022593348eSBarry Smith col_lens[0] = MAT_COOKIE; 1033b2fbd54SBarry Smith 1042593348eSBarry Smith col_lens[1] = a->m; 1052593348eSBarry Smith col_lens[2] = a->n; 1067e67e3f9SSatish Balay col_lens[3] = a->nz*bs2; 1072593348eSBarry Smith 1082593348eSBarry Smith /* store lengths of each row and write (including header) to file */ 109b6490206SBarry Smith count = 0; 110b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 111b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 112b6490206SBarry Smith col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 113b6490206SBarry Smith } 1142593348eSBarry Smith } 11577c4ece6SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+a->m,BINARY_INT,1); CHKERRQ(ierr); 1162593348eSBarry Smith PetscFree(col_lens); 1172593348eSBarry Smith 1182593348eSBarry Smith /* store column indices (zero start index) */ 1197e67e3f9SSatish Balay jj = (int *) PetscMalloc( a->nz*bs2*sizeof(int) ); CHKPTRQ(jj); 120b6490206SBarry Smith count = 0; 121b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 122b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 123b6490206SBarry Smith for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 124b6490206SBarry Smith for ( l=0; l<bs; l++ ) { 125b6490206SBarry Smith jj[count++] = bs*a->j[k] + l; 1262593348eSBarry Smith } 1272593348eSBarry Smith } 128b6490206SBarry Smith } 129b6490206SBarry Smith } 1307e67e3f9SSatish Balay ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,BINARY_INT,0); CHKERRQ(ierr); 131b6490206SBarry Smith PetscFree(jj); 1322593348eSBarry Smith 1332593348eSBarry Smith /* store nonzero values */ 1347e67e3f9SSatish Balay aa = (Scalar *) PetscMalloc(a->nz*bs2*sizeof(Scalar)); CHKPTRQ(aa); 135b6490206SBarry Smith count = 0; 136b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 137b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 138b6490206SBarry Smith for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 139b6490206SBarry Smith for ( l=0; l<bs; l++ ) { 1407e67e3f9SSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 141b6490206SBarry Smith } 142b6490206SBarry Smith } 143b6490206SBarry Smith } 144b6490206SBarry Smith } 1457e67e3f9SSatish Balay ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,BINARY_SCALAR,0); CHKERRQ(ierr); 146b6490206SBarry Smith PetscFree(aa); 1472593348eSBarry Smith return 0; 1482593348eSBarry Smith } 1492593348eSBarry Smith 1505615d1e5SSatish Balay #undef __FUNC__ 1515eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_ASCII" /* ADIC Ignore */ 152b6490206SBarry Smith static int MatView_SeqBAIJ_ASCII(Mat A,Viewer viewer) 1532593348eSBarry Smith { 154b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1559df24120SSatish Balay int ierr, i,j,format,bs = a->bs,k,l,bs2=a->bs2; 1562593348eSBarry Smith FILE *fd; 1572593348eSBarry Smith char *outputname; 1582593348eSBarry Smith 15990ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 1602593348eSBarry Smith ierr = ViewerFileGetOutputname_Private(viewer,&outputname);CHKERRQ(ierr); 16190ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 162639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO || format == VIEWER_FORMAT_ASCII_INFO_LONG) { 1637ddc982cSLois Curfman McInnes fprintf(fd," block size is %d\n",bs); 1642593348eSBarry Smith } 165639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_MATLAB) { 166e3372554SBarry Smith SETERRQ(1,0,"Matlab format not supported"); 1672593348eSBarry Smith } 168639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_COMMON) { 16944cd7ae7SLois Curfman McInnes for ( i=0; i<a->mbs; i++ ) { 17044cd7ae7SLois Curfman McInnes for ( j=0; j<bs; j++ ) { 17144cd7ae7SLois Curfman McInnes fprintf(fd,"row %d:",i*bs+j); 17244cd7ae7SLois Curfman McInnes for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 17344cd7ae7SLois Curfman McInnes for ( l=0; l<bs; l++ ) { 17444cd7ae7SLois Curfman McInnes #if defined(PETSC_COMPLEX) 17544cd7ae7SLois Curfman McInnes if (imag(a->a[bs2*k + l*bs + j]) != 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0) 17644cd7ae7SLois Curfman McInnes fprintf(fd," %d %g + %g i",bs*a->j[k]+l, 17744cd7ae7SLois Curfman McInnes real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j])); 17844cd7ae7SLois Curfman McInnes else if (real(a->a[bs2*k + l*bs + j]) != 0.0) 17944cd7ae7SLois Curfman McInnes fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j])); 18044cd7ae7SLois Curfman McInnes #else 18144cd7ae7SLois Curfman McInnes if (a->a[bs2*k + l*bs + j] != 0.0) 18244cd7ae7SLois Curfman McInnes fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]); 18344cd7ae7SLois Curfman McInnes #endif 18444cd7ae7SLois Curfman McInnes } 18544cd7ae7SLois Curfman McInnes } 18644cd7ae7SLois Curfman McInnes fprintf(fd,"\n"); 18744cd7ae7SLois Curfman McInnes } 18844cd7ae7SLois Curfman McInnes } 18944cd7ae7SLois Curfman McInnes } 1902593348eSBarry Smith else { 191b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 192b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 193b6490206SBarry Smith fprintf(fd,"row %d:",i*bs+j); 194b6490206SBarry Smith for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 195b6490206SBarry Smith for ( l=0; l<bs; l++ ) { 19688685aaeSLois Curfman McInnes #if defined(PETSC_COMPLEX) 1977e67e3f9SSatish Balay if (imag(a->a[bs2*k + l*bs + j]) != 0.0) { 19888685aaeSLois Curfman McInnes fprintf(fd," %d %g + %g i",bs*a->j[k]+l, 1997e67e3f9SSatish Balay real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j])); 20088685aaeSLois Curfman McInnes } 20188685aaeSLois Curfman McInnes else { 2027e67e3f9SSatish Balay fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j])); 20388685aaeSLois Curfman McInnes } 20488685aaeSLois Curfman McInnes #else 2057e67e3f9SSatish Balay fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]); 20688685aaeSLois Curfman McInnes #endif 2072593348eSBarry Smith } 2082593348eSBarry Smith } 2092593348eSBarry Smith fprintf(fd,"\n"); 2102593348eSBarry Smith } 2112593348eSBarry Smith } 212b6490206SBarry Smith } 2132593348eSBarry Smith fflush(fd); 2142593348eSBarry Smith return 0; 2152593348eSBarry Smith } 2162593348eSBarry Smith 2175615d1e5SSatish Balay #undef __FUNC__ 2185eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Draw" /* ADIC Ignore */ 2193270192aSSatish Balay static int MatView_SeqBAIJ_Draw(Mat A,Viewer viewer) 2203270192aSSatish Balay { 2213270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *) A->data; 2223270192aSSatish Balay int row,ierr,i,j,k,l,mbs=a->mbs,pause,color,bs=a->bs,bs2=a->bs2; 2233270192aSSatish Balay double xl,yl,xr,yr,w,h,xc,yc,scale = 1.0,x_l,x_r,y_l,y_r; 2243270192aSSatish Balay Scalar *aa; 2253270192aSSatish Balay Draw draw; 2263270192aSSatish Balay DrawButton button; 2273270192aSSatish Balay PetscTruth isnull; 2283270192aSSatish Balay 2293270192aSSatish Balay ViewerDrawGetDraw(viewer,&draw); 2303270192aSSatish Balay ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0; 2313270192aSSatish Balay 2323270192aSSatish Balay xr = a->n; yr = a->m; h = yr/10.0; w = xr/10.0; 2333270192aSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 2343270192aSSatish Balay ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr); 2353270192aSSatish Balay /* loop over matrix elements drawing boxes */ 2363270192aSSatish Balay color = DRAW_BLUE; 2373270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 2383270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 2393270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 2403270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 2413270192aSSatish Balay aa = a->a + j*bs2; 2423270192aSSatish Balay for ( k=0; k<bs; k++ ) { 2433270192aSSatish Balay for ( l=0; l<bs; l++ ) { 2443270192aSSatish Balay if (PetscReal(*aa++) >= 0.) continue; 245b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 2463270192aSSatish Balay } 2473270192aSSatish Balay } 2483270192aSSatish Balay } 2493270192aSSatish Balay } 2503270192aSSatish Balay color = DRAW_CYAN; 2513270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 2523270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 2533270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 2543270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 2553270192aSSatish Balay aa = a->a + j*bs2; 2563270192aSSatish Balay for ( k=0; k<bs; k++ ) { 2573270192aSSatish Balay for ( l=0; l<bs; l++ ) { 2583270192aSSatish Balay if (PetscReal(*aa++) != 0.) continue; 259b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 2603270192aSSatish Balay } 2613270192aSSatish Balay } 2623270192aSSatish Balay } 2633270192aSSatish Balay } 2643270192aSSatish Balay 2653270192aSSatish Balay color = DRAW_RED; 2663270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 2673270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 2683270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 2693270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 2703270192aSSatish Balay aa = a->a + j*bs2; 2713270192aSSatish Balay for ( k=0; k<bs; k++ ) { 2723270192aSSatish Balay for ( l=0; l<bs; l++ ) { 2733270192aSSatish Balay if (PetscReal(*aa++) <= 0.) continue; 274b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 2753270192aSSatish Balay } 2763270192aSSatish Balay } 2773270192aSSatish Balay } 2783270192aSSatish Balay } 2793270192aSSatish Balay 2803270192aSSatish Balay DrawFlush(draw); 2813270192aSSatish Balay DrawGetPause(draw,&pause); 2823270192aSSatish Balay if (pause >= 0) { PetscSleep(pause); return 0;} 2833270192aSSatish Balay 2843270192aSSatish Balay /* allow the matrix to zoom or shrink */ 2853270192aSSatish Balay ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0); 2863270192aSSatish Balay while (button != BUTTON_RIGHT) { 2873270192aSSatish Balay DrawClear(draw); 2883270192aSSatish Balay if (button == BUTTON_LEFT) scale = .5; 2893270192aSSatish Balay else if (button == BUTTON_CENTER) scale = 2.; 2903270192aSSatish Balay xl = scale*(xl + w - xc) + xc - w*scale; 2913270192aSSatish Balay xr = scale*(xr - w - xc) + xc + w*scale; 2923270192aSSatish Balay yl = scale*(yl + h - yc) + yc - h*scale; 2933270192aSSatish Balay yr = scale*(yr - h - yc) + yc + h*scale; 2943270192aSSatish Balay w *= scale; h *= scale; 2953270192aSSatish Balay ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr); 2963270192aSSatish Balay color = DRAW_BLUE; 2973270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 2983270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 2993270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 3003270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 3013270192aSSatish Balay aa = a->a + j*bs2; 3023270192aSSatish Balay for ( k=0; k<bs; k++ ) { 3033270192aSSatish Balay for ( l=0; l<bs; l++ ) { 3043270192aSSatish Balay if (PetscReal(*aa++) >= 0.) continue; 305b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 3063270192aSSatish Balay } 3073270192aSSatish Balay } 3083270192aSSatish Balay } 3093270192aSSatish Balay } 3103270192aSSatish Balay color = DRAW_CYAN; 3113270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 3123270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 3133270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 3143270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 3153270192aSSatish Balay aa = a->a + j*bs2; 3163270192aSSatish Balay for ( k=0; k<bs; k++ ) { 3173270192aSSatish Balay for ( l=0; l<bs; l++ ) { 3183270192aSSatish Balay if (PetscReal(*aa++) != 0.) continue; 319b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 3203270192aSSatish Balay } 3213270192aSSatish Balay } 3223270192aSSatish Balay } 3233270192aSSatish Balay } 3243270192aSSatish Balay 3253270192aSSatish Balay color = DRAW_RED; 3263270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 3273270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 3283270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 3293270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 3303270192aSSatish Balay aa = a->a + j*bs2; 3313270192aSSatish Balay for ( k=0; k<bs; k++ ) { 3323270192aSSatish Balay for ( l=0; l<bs; l++ ) { 3333270192aSSatish Balay if (PetscReal(*aa++) <= 0.) continue; 334b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 3353270192aSSatish Balay } 3363270192aSSatish Balay } 3373270192aSSatish Balay } 3383270192aSSatish Balay } 3393270192aSSatish Balay ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0); 3403270192aSSatish Balay } 3413270192aSSatish Balay return 0; 3423270192aSSatish Balay } 3433270192aSSatish Balay 3445615d1e5SSatish Balay #undef __FUNC__ 3455eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ" /* ADIC Ignore */ 3468f6be9afSLois Curfman McInnes int MatView_SeqBAIJ(PetscObject obj,Viewer viewer) 3472593348eSBarry Smith { 3482593348eSBarry Smith Mat A = (Mat) obj; 34919bcc07fSBarry Smith ViewerType vtype; 35019bcc07fSBarry Smith int ierr; 3512593348eSBarry Smith 35219bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 35319bcc07fSBarry Smith if (vtype == MATLAB_VIEWER) { 354e3372554SBarry Smith SETERRQ(1,0,"Matlab viewer not supported"); 3552593348eSBarry Smith } 35619bcc07fSBarry Smith else if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER){ 357b6490206SBarry Smith return MatView_SeqBAIJ_ASCII(A,viewer); 3582593348eSBarry Smith } 35919bcc07fSBarry Smith else if (vtype == BINARY_FILE_VIEWER) { 360b6490206SBarry Smith return MatView_SeqBAIJ_Binary(A,viewer); 3612593348eSBarry Smith } 36219bcc07fSBarry Smith else if (vtype == DRAW_VIEWER) { 3633270192aSSatish Balay return MatView_SeqBAIJ_Draw(A,viewer); 3642593348eSBarry Smith } 3652593348eSBarry Smith return 0; 3662593348eSBarry Smith } 367b6490206SBarry Smith 368119a934aSSatish Balay #define CHUNKSIZE 10 369cd0e1443SSatish Balay 3705615d1e5SSatish Balay #undef __FUNC__ 3715615d1e5SSatish Balay #define __FUNC__ "MatSetValues_SeqBAIJ" 372639f9d9dSBarry Smith int MatSetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is) 373cd0e1443SSatish Balay { 374cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 375cd0e1443SSatish Balay int *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted; 376cd0e1443SSatish Balay int *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 377a7c10996SSatish Balay int *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol; 3789df24120SSatish Balay int ridx,cidx,bs2=a->bs2; 379cd0e1443SSatish Balay Scalar *ap,value,*aa=a->a,*bap; 380cd0e1443SSatish Balay 381cd0e1443SSatish Balay for ( k=0; k<m; k++ ) { /* loop over added rows */ 382cd0e1443SSatish Balay row = im[k]; brow = row/bs; 3833b2fbd54SBarry Smith #if defined(PETSC_BOPT_g) 384e3372554SBarry Smith if (row < 0) SETERRQ(1,0,"Negative row"); 385e3372554SBarry Smith if (row >= a->m) SETERRQ(1,0,"Row too large"); 3863b2fbd54SBarry Smith #endif 3872c3acbe9SBarry Smith rp = aj + ai[brow]; 3882c3acbe9SBarry Smith ap = aa + bs2*ai[brow]; 3892c3acbe9SBarry Smith rmax = imax[brow]; 3902c3acbe9SBarry Smith nrow = ailen[brow]; 391cd0e1443SSatish Balay low = 0; 392cd0e1443SSatish Balay for ( l=0; l<n; l++ ) { /* loop over added columns */ 3933b2fbd54SBarry Smith #if defined(PETSC_BOPT_g) 394e3372554SBarry Smith if (in[l] < 0) SETERRQ(1,0,"Negative column"); 395e3372554SBarry Smith if (in[l] >= a->n) SETERRQ(1,0,"Column too large"); 3963b2fbd54SBarry Smith #endif 397a7c10996SSatish Balay col = in[l]; bcol = col/bs; 398cd0e1443SSatish Balay ridx = row % bs; cidx = col % bs; 399cd0e1443SSatish Balay if (roworiented) { 400cd0e1443SSatish Balay value = *v++; 401cd0e1443SSatish Balay } 402cd0e1443SSatish Balay else { 403cd0e1443SSatish Balay value = v[k + l*m]; 404cd0e1443SSatish Balay } 405cd0e1443SSatish Balay if (!sorted) low = 0; high = nrow; 4062c3acbe9SBarry Smith while (high-low > 7) { 407cd0e1443SSatish Balay t = (low+high)/2; 408cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 409cd0e1443SSatish Balay else low = t; 410cd0e1443SSatish Balay } 411cd0e1443SSatish Balay for ( i=low; i<high; i++ ) { 412cd0e1443SSatish Balay if (rp[i] > bcol) break; 413cd0e1443SSatish Balay if (rp[i] == bcol) { 4147e67e3f9SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 415cd0e1443SSatish Balay if (is == ADD_VALUES) *bap += value; 416cd0e1443SSatish Balay else *bap = value; 417f1241b54SBarry Smith goto noinsert1; 418cd0e1443SSatish Balay } 419cd0e1443SSatish Balay } 420c2653b3dSLois Curfman McInnes if (nonew == 1) goto noinsert1; 421c2653b3dSLois Curfman McInnes else if (nonew == -1) SETERRQ(1,1,"Inserting a new nonzero in the matrix"); 422cd0e1443SSatish Balay if (nrow >= rmax) { 423cd0e1443SSatish Balay /* there is no extra room in row, therefore enlarge */ 424cd0e1443SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 425cd0e1443SSatish Balay Scalar *new_a; 426cd0e1443SSatish Balay 427cd0e1443SSatish Balay /* malloc new storage space */ 4287e67e3f9SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); 429cd0e1443SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); 4307e67e3f9SSatish Balay new_j = (int *) (new_a + bs2*new_nz); 431cd0e1443SSatish Balay new_i = new_j + new_nz; 432cd0e1443SSatish Balay 433cd0e1443SSatish Balay /* copy over old data into new slots */ 434cd0e1443SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} 4357e67e3f9SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} 436a7c10996SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); 437a7c10996SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); 438a7c10996SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, 439cd0e1443SSatish Balay len*sizeof(int)); 440a7c10996SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); 441a7c10996SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); 442a7c10996SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), 443a7c10996SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); 444cd0e1443SSatish Balay /* free up old matrix storage */ 445cd0e1443SSatish Balay PetscFree(a->a); 446cd0e1443SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} 447cd0e1443SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 448cd0e1443SSatish Balay a->singlemalloc = 1; 449cd0e1443SSatish Balay 450a7c10996SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 451cd0e1443SSatish Balay rmax = imax[brow] = imax[brow] + CHUNKSIZE; 4527e67e3f9SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); 45318e7b8e4SLois Curfman McInnes a->maxnz += bs2*CHUNKSIZE; 454cd0e1443SSatish Balay a->reallocs++; 455119a934aSSatish Balay a->nz++; 456cd0e1443SSatish Balay } 4577e67e3f9SSatish Balay N = nrow++ - 1; 458cd0e1443SSatish Balay /* shift up all the later entries in this row */ 459cd0e1443SSatish Balay for ( ii=N; ii>=i; ii-- ) { 460cd0e1443SSatish Balay rp[ii+1] = rp[ii]; 4617e67e3f9SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); 462cd0e1443SSatish Balay } 4637e67e3f9SSatish Balay if (N>=i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar)); 464cd0e1443SSatish Balay rp[i] = bcol; 4657e67e3f9SSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 466f1241b54SBarry Smith noinsert1:; 467cd0e1443SSatish Balay low = i; 468cd0e1443SSatish Balay } 469cd0e1443SSatish Balay ailen[brow] = nrow; 470cd0e1443SSatish Balay } 471cd0e1443SSatish Balay return 0; 472cd0e1443SSatish Balay } 473cd0e1443SSatish Balay 4745615d1e5SSatish Balay #undef __FUNC__ 47592c4ed94SBarry Smith #define __FUNC__ "MatSetValues_SeqBAIJ" 47692c4ed94SBarry Smith int MatSetValuesBlocked_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is) 47792c4ed94SBarry Smith { 47892c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 4798a84c255SSatish Balay int *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted; 4800e324ae4SSatish Balay int *imax=a->imax,*ai=a->i,*ailen=a->ilen; 4810e324ae4SSatish Balay int roworiented=a->roworiented; 4828a84c255SSatish Balay int *aj=a->j,nonew=a->nonew; 4830e324ae4SSatish Balay int bs2=a->bs2,bs=a->bs,stepval; 4840e324ae4SSatish Balay Scalar *ap,*value=v,*aa=a->a,*bap; 48592c4ed94SBarry Smith 4860e324ae4SSatish Balay if (roworiented) { 4870e324ae4SSatish Balay stepval = (n-1)*bs; 4880e324ae4SSatish Balay } else { 4890e324ae4SSatish Balay stepval = (m-1)*bs; 4900e324ae4SSatish Balay } 49192c4ed94SBarry Smith for ( k=0; k<m; k++ ) { /* loop over added rows */ 49292c4ed94SBarry Smith row = im[k]; 49392c4ed94SBarry Smith #if defined(PETSC_BOPT_g) 49492c4ed94SBarry Smith if (row < 0) SETERRQ(1,0,"Negative row"); 4958a84c255SSatish Balay if (row >= a->mbs) SETERRQ(1,0,"Row too large"); 49692c4ed94SBarry Smith #endif 49792c4ed94SBarry Smith rp = aj + ai[row]; 49892c4ed94SBarry Smith ap = aa + bs2*ai[row]; 49992c4ed94SBarry Smith rmax = imax[row]; 50092c4ed94SBarry Smith nrow = ailen[row]; 50192c4ed94SBarry Smith low = 0; 50292c4ed94SBarry Smith for ( l=0; l<n; l++ ) { /* loop over added columns */ 50392c4ed94SBarry Smith #if defined(PETSC_BOPT_g) 50492c4ed94SBarry Smith if (in[l] < 0) SETERRQ(1,0,"Negative column"); 5058a84c255SSatish Balay if (in[l] >= a->nbs) SETERRQ(1,0,"Column too large"); 50692c4ed94SBarry Smith #endif 50792c4ed94SBarry Smith col = in[l]; 50892c4ed94SBarry Smith if (roworiented) { 5090e324ae4SSatish Balay value = v + k*(stepval+bs)*bs + l*bs; 5100e324ae4SSatish Balay } else { 5110e324ae4SSatish Balay value = v + l*(stepval+bs)*bs + k*bs; 51292c4ed94SBarry Smith } 51392c4ed94SBarry Smith if (!sorted) low = 0; high = nrow; 51492c4ed94SBarry Smith while (high-low > 7) { 51592c4ed94SBarry Smith t = (low+high)/2; 51692c4ed94SBarry Smith if (rp[t] > col) high = t; 51792c4ed94SBarry Smith else low = t; 51892c4ed94SBarry Smith } 51992c4ed94SBarry Smith for ( i=low; i<high; i++ ) { 52092c4ed94SBarry Smith if (rp[i] > col) break; 52192c4ed94SBarry Smith if (rp[i] == col) { 5228a84c255SSatish Balay bap = ap + bs2*i; 5230e324ae4SSatish Balay if (roworiented) { 5248a84c255SSatish Balay if (is == ADD_VALUES) { 5250e324ae4SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval ) 5268a84c255SSatish Balay for (jj=ii; jj<bs2; jj+=bs ) 5278a84c255SSatish Balay bap[jj] += *value++; 5280e324ae4SSatish Balay } else { 5290e324ae4SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval ) 5300e324ae4SSatish Balay for (jj=ii; jj<bs2; jj+=bs ) 5310e324ae4SSatish Balay bap[jj] = *value++; 5328a84c255SSatish Balay } 5330e324ae4SSatish Balay } else { 5340e324ae4SSatish Balay if (is == ADD_VALUES) { 5350e324ae4SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval ) 5360e324ae4SSatish Balay for (jj=0; jj<bs; jj++ ) 5370e324ae4SSatish Balay *bap++ += *value++; 5380e324ae4SSatish Balay } else { 5390e324ae4SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval ) 5400e324ae4SSatish Balay for (jj=0; jj<bs; jj++ ) 5410e324ae4SSatish Balay *bap++ = *value++; 5420e324ae4SSatish Balay } 5438a84c255SSatish Balay } 544f1241b54SBarry Smith goto noinsert2; 54592c4ed94SBarry Smith } 54692c4ed94SBarry Smith } 547f1241b54SBarry Smith if (nonew) goto noinsert2; 54892c4ed94SBarry Smith if (nrow >= rmax) { 54992c4ed94SBarry Smith /* there is no extra room in row, therefore enlarge */ 55092c4ed94SBarry Smith int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 55192c4ed94SBarry Smith Scalar *new_a; 55292c4ed94SBarry Smith 55392c4ed94SBarry Smith /* malloc new storage space */ 55492c4ed94SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); 55592c4ed94SBarry Smith new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); 55692c4ed94SBarry Smith new_j = (int *) (new_a + bs2*new_nz); 55792c4ed94SBarry Smith new_i = new_j + new_nz; 55892c4ed94SBarry Smith 55992c4ed94SBarry Smith /* copy over old data into new slots */ 56092c4ed94SBarry Smith for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];} 56192c4ed94SBarry Smith for ( ii=row+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} 56292c4ed94SBarry Smith PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int)); 56392c4ed94SBarry Smith len = (new_nz - CHUNKSIZE - ai[row] - nrow); 56492c4ed94SBarry Smith PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow, 56592c4ed94SBarry Smith len*sizeof(int)); 56692c4ed94SBarry Smith PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(Scalar)); 56792c4ed94SBarry Smith PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); 56892c4ed94SBarry Smith PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE), 56992c4ed94SBarry Smith aa+bs2*(ai[row]+nrow),bs2*len*sizeof(Scalar)); 57092c4ed94SBarry Smith /* free up old matrix storage */ 57192c4ed94SBarry Smith PetscFree(a->a); 57292c4ed94SBarry Smith if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} 57392c4ed94SBarry Smith aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 57492c4ed94SBarry Smith a->singlemalloc = 1; 57592c4ed94SBarry Smith 57692c4ed94SBarry Smith rp = aj + ai[row]; ap = aa + bs2*ai[row]; 57792c4ed94SBarry Smith rmax = imax[row] = imax[row] + CHUNKSIZE; 57892c4ed94SBarry Smith PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); 57992c4ed94SBarry Smith a->maxnz += bs2*CHUNKSIZE; 58092c4ed94SBarry Smith a->reallocs++; 58192c4ed94SBarry Smith a->nz++; 58292c4ed94SBarry Smith } 58392c4ed94SBarry Smith N = nrow++ - 1; 58492c4ed94SBarry Smith /* shift up all the later entries in this row */ 58592c4ed94SBarry Smith for ( ii=N; ii>=i; ii-- ) { 58692c4ed94SBarry Smith rp[ii+1] = rp[ii]; 58792c4ed94SBarry Smith PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); 58892c4ed94SBarry Smith } 58992c4ed94SBarry Smith if (N >= i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar)); 59092c4ed94SBarry Smith rp[i] = col; 5918a84c255SSatish Balay bap = ap + bs2*i; 5920e324ae4SSatish Balay if (roworiented) { 5930e324ae4SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) 5948a84c255SSatish Balay for (jj=ii; jj<bs2; jj+=bs ) 5950e324ae4SSatish Balay bap[jj] = *value++; 5960e324ae4SSatish Balay } else { 5970e324ae4SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval ) 5980e324ae4SSatish Balay for (jj=0; jj<bs; jj++ ) 5990e324ae4SSatish Balay *bap++ = *value++; 6000e324ae4SSatish Balay } 601f1241b54SBarry Smith noinsert2:; 60292c4ed94SBarry Smith low = i; 60392c4ed94SBarry Smith } 60492c4ed94SBarry Smith ailen[row] = nrow; 60592c4ed94SBarry Smith } 60692c4ed94SBarry Smith return 0; 60792c4ed94SBarry Smith } 60892c4ed94SBarry Smith 60992c4ed94SBarry Smith #undef __FUNC__ 6105eea60f9SBarry Smith #define __FUNC__ "MatGetSize_SeqBAIJ" /* ADIC Ignore */ 6118f6be9afSLois Curfman McInnes int MatGetSize_SeqBAIJ(Mat A,int *m,int *n) 6120b824a48SSatish Balay { 6130b824a48SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 6140b824a48SSatish Balay *m = a->m; *n = a->n; 6150b824a48SSatish Balay return 0; 6160b824a48SSatish Balay } 6170b824a48SSatish Balay 6185615d1e5SSatish Balay #undef __FUNC__ 6195eea60f9SBarry Smith #define __FUNC__ "MatGetOwnershipRange_SeqBAIJ" /* ADIC Ignore */ 6208f6be9afSLois Curfman McInnes int MatGetOwnershipRange_SeqBAIJ(Mat A,int *m,int *n) 6210b824a48SSatish Balay { 6220b824a48SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 6230b824a48SSatish Balay *m = 0; *n = a->m; 6240b824a48SSatish Balay return 0; 6250b824a48SSatish Balay } 6260b824a48SSatish Balay 6275615d1e5SSatish Balay #undef __FUNC__ 6285615d1e5SSatish Balay #define __FUNC__ "MatGetRow_SeqBAIJ" 6299867e207SSatish Balay int MatGetRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v) 6309867e207SSatish Balay { 6319867e207SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 6327e67e3f9SSatish Balay int itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2; 6339867e207SSatish Balay Scalar *aa,*v_i,*aa_i; 6349867e207SSatish Balay 6359867e207SSatish Balay bs = a->bs; 6369867e207SSatish Balay ai = a->i; 6379867e207SSatish Balay aj = a->j; 6389867e207SSatish Balay aa = a->a; 6399df24120SSatish Balay bs2 = a->bs2; 6409867e207SSatish Balay 641e3372554SBarry Smith if (row < 0 || row >= a->m) SETERRQ(1,0,"Row out of range"); 6429867e207SSatish Balay 6439867e207SSatish Balay bn = row/bs; /* Block number */ 6449867e207SSatish Balay bp = row % bs; /* Block Position */ 6459867e207SSatish Balay M = ai[bn+1] - ai[bn]; 6469867e207SSatish Balay *nz = bs*M; 6479867e207SSatish Balay 6489867e207SSatish Balay if (v) { 6499867e207SSatish Balay *v = 0; 6509867e207SSatish Balay if (*nz) { 6519867e207SSatish Balay *v = (Scalar *) PetscMalloc( (*nz)*sizeof(Scalar) ); CHKPTRQ(*v); 6529867e207SSatish Balay for ( i=0; i<M; i++ ) { /* for each block in the block row */ 6539867e207SSatish Balay v_i = *v + i*bs; 6547e67e3f9SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 6557e67e3f9SSatish Balay for ( j=bp,k=0; j<bs2; j+=bs,k++ ) {v_i[k] = aa_i[j];} 6569867e207SSatish Balay } 6579867e207SSatish Balay } 6589867e207SSatish Balay } 6599867e207SSatish Balay 6609867e207SSatish Balay if (idx) { 6619867e207SSatish Balay *idx = 0; 6629867e207SSatish Balay if (*nz) { 6639867e207SSatish Balay *idx = (int *) PetscMalloc( (*nz)*sizeof(int) ); CHKPTRQ(*idx); 6649867e207SSatish Balay for ( i=0; i<M; i++ ) { /* for each block in the block row */ 6659867e207SSatish Balay idx_i = *idx + i*bs; 6669867e207SSatish Balay itmp = bs*aj[ai[bn] + i]; 6679867e207SSatish Balay for ( j=0; j<bs; j++ ) {idx_i[j] = itmp++;} 6689867e207SSatish Balay } 6699867e207SSatish Balay } 6709867e207SSatish Balay } 6719867e207SSatish Balay return 0; 6729867e207SSatish Balay } 6739867e207SSatish Balay 6745615d1e5SSatish Balay #undef __FUNC__ 6755eea60f9SBarry Smith #define __FUNC__ "MatRestoreRow_SeqBAIJ" /* ADIC Ignore */ 6769867e207SSatish Balay int MatRestoreRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v) 6779867e207SSatish Balay { 6789867e207SSatish Balay if (idx) {if (*idx) PetscFree(*idx);} 6799867e207SSatish Balay if (v) {if (*v) PetscFree(*v);} 6809867e207SSatish Balay return 0; 6819867e207SSatish Balay } 682b6490206SBarry Smith 6835615d1e5SSatish Balay #undef __FUNC__ 6845615d1e5SSatish Balay #define __FUNC__ "MatTranspose_SeqBAIJ" 6858f6be9afSLois Curfman McInnes int MatTranspose_SeqBAIJ(Mat A,Mat *B) 686f2501298SSatish Balay { 687f2501298SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; 688f2501298SSatish Balay Mat C; 689f2501298SSatish Balay int i,j,k,ierr,*aj=a->j,*ai=a->i,bs=a->bs,mbs=a->mbs,nbs=a->nbs,len,*col; 6909df24120SSatish Balay int *rows,*cols,bs2=a->bs2; 691f2501298SSatish Balay Scalar *array=a->a; 692f2501298SSatish Balay 693f2501298SSatish Balay if (B==PETSC_NULL && mbs!=nbs) 694e3372554SBarry Smith SETERRQ(1,0,"Square matrix only for in-place"); 695f2501298SSatish Balay col = (int *) PetscMalloc((1+nbs)*sizeof(int)); CHKPTRQ(col); 696f2501298SSatish Balay PetscMemzero(col,(1+nbs)*sizeof(int)); 697a7c10996SSatish Balay 698a7c10996SSatish Balay for ( i=0; i<ai[mbs]; i++ ) col[aj[i]] += 1; 699f2501298SSatish Balay ierr = MatCreateSeqBAIJ(A->comm,bs,a->n,a->m,PETSC_NULL,col,&C); CHKERRQ(ierr); 700f2501298SSatish Balay PetscFree(col); 701f2501298SSatish Balay rows = (int *) PetscMalloc(2*bs*sizeof(int)); CHKPTRQ(rows); 702f2501298SSatish Balay cols = rows + bs; 703f2501298SSatish Balay for ( i=0; i<mbs; i++ ) { 704f2501298SSatish Balay cols[0] = i*bs; 705f2501298SSatish Balay for (k=1; k<bs; k++ ) cols[k] = cols[k-1] + 1; 706f2501298SSatish Balay len = ai[i+1] - ai[i]; 707f2501298SSatish Balay for ( j=0; j<len; j++ ) { 708f2501298SSatish Balay rows[0] = (*aj++)*bs; 709f2501298SSatish Balay for (k=1; k<bs; k++ ) rows[k] = rows[k-1] + 1; 710f2501298SSatish Balay ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES); CHKERRQ(ierr); 711f2501298SSatish Balay array += bs2; 712f2501298SSatish Balay } 713f2501298SSatish Balay } 7141073c447SSatish Balay PetscFree(rows); 715f2501298SSatish Balay 7166d4a8577SBarry Smith ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 7176d4a8577SBarry Smith ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 718f2501298SSatish Balay 719f2501298SSatish Balay if (B != PETSC_NULL) { 720f2501298SSatish Balay *B = C; 721f2501298SSatish Balay } else { 722f2501298SSatish Balay /* This isn't really an in-place transpose */ 723f2501298SSatish Balay PetscFree(a->a); 724f2501298SSatish Balay if (!a->singlemalloc) {PetscFree(a->i); PetscFree(a->j);} 725f2501298SSatish Balay if (a->diag) PetscFree(a->diag); 726f2501298SSatish Balay if (a->ilen) PetscFree(a->ilen); 727f2501298SSatish Balay if (a->imax) PetscFree(a->imax); 728f2501298SSatish Balay if (a->solve_work) PetscFree(a->solve_work); 729f2501298SSatish Balay PetscFree(a); 730f2501298SSatish Balay PetscMemcpy(A,C,sizeof(struct _Mat)); 731f2501298SSatish Balay PetscHeaderDestroy(C); 732f2501298SSatish Balay } 733f2501298SSatish Balay return 0; 734f2501298SSatish Balay } 735f2501298SSatish Balay 736f2501298SSatish Balay 7375615d1e5SSatish Balay #undef __FUNC__ 7385615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_SeqBAIJ" 7398f6be9afSLois Curfman McInnes int MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 740584200bdSSatish Balay { 741584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 742584200bdSSatish Balay int fshift = 0,i,j,*ai = a->i, *aj = a->j, *imax = a->imax; 743a7c10996SSatish Balay int m = a->m,*ip, N, *ailen = a->ilen; 744d402145bSBarry Smith int mbs = a->mbs, bs2 = a->bs2,rmax; 745584200bdSSatish Balay Scalar *aa = a->a, *ap; 746584200bdSSatish Balay 7476d4a8577SBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) return 0; 748584200bdSSatish Balay 749d402145bSBarry Smith rmax = ailen[0]; 750584200bdSSatish Balay for ( i=1; i<mbs; i++ ) { 751584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 752584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 753d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 754584200bdSSatish Balay if (fshift) { 755a7c10996SSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 756584200bdSSatish Balay N = ailen[i]; 757584200bdSSatish Balay for ( j=0; j<N; j++ ) { 758584200bdSSatish Balay ip[j-fshift] = ip[j]; 7597e67e3f9SSatish Balay PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(Scalar)); 760584200bdSSatish Balay } 761584200bdSSatish Balay } 762584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 763584200bdSSatish Balay } 764584200bdSSatish Balay if (mbs) { 765584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 766584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 767584200bdSSatish Balay } 768584200bdSSatish Balay /* reset ilen and imax for each row */ 769584200bdSSatish Balay for ( i=0; i<mbs; i++ ) { 770584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 771584200bdSSatish Balay } 772a7c10996SSatish Balay a->nz = ai[mbs]; 773584200bdSSatish Balay 774584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 775584200bdSSatish Balay if (fshift && a->diag) { 776584200bdSSatish Balay PetscFree(a->diag); 777584200bdSSatish Balay PLogObjectMemory(A,-(m+1)*sizeof(int)); 778584200bdSSatish Balay a->diag = 0; 779584200bdSSatish Balay } 7803d2013a6SLois Curfman McInnes PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n", 781219d9a1aSLois Curfman McInnes m,a->n,a->bs,fshift*bs2,a->nz*bs2); 7823d2013a6SLois Curfman McInnes PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Number of mallocs during MatSetValues is %d\n", 783584200bdSSatish Balay a->reallocs); 784d402145bSBarry Smith PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Most nonzeros blocks in any row is %d\n",rmax); 785e2f3b5e9SSatish Balay a->reallocs = 0; 7864e220ebcSLois Curfman McInnes A->info.nz_unneeded = (double)fshift*bs2; 7874e220ebcSLois Curfman McInnes 788584200bdSSatish Balay return 0; 789584200bdSSatish Balay } 790584200bdSSatish Balay 7915615d1e5SSatish Balay #undef __FUNC__ 7925615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_SeqBAIJ" 7938f6be9afSLois Curfman McInnes int MatZeroEntries_SeqBAIJ(Mat A) 7942593348eSBarry Smith { 795b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 7969df24120SSatish Balay PetscMemzero(a->a,a->bs2*a->i[a->mbs]*sizeof(Scalar)); 7972593348eSBarry Smith return 0; 7982593348eSBarry Smith } 7992593348eSBarry Smith 8005615d1e5SSatish Balay #undef __FUNC__ 8015eea60f9SBarry Smith #define __FUNC__ "MatDestroy_SeqBAIJ" /* ADIC Ignore */ 802b6490206SBarry Smith int MatDestroy_SeqBAIJ(PetscObject obj) 8032593348eSBarry Smith { 8042593348eSBarry Smith Mat A = (Mat) obj; 805b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 80690f02eecSBarry Smith int ierr; 8072593348eSBarry Smith 8082593348eSBarry Smith #if defined(PETSC_LOG) 8092593348eSBarry Smith PLogObjectState(obj,"Rows=%d, Cols=%d, NZ=%d",a->m,a->n,a->nz); 8102593348eSBarry Smith #endif 8112593348eSBarry Smith PetscFree(a->a); 8122593348eSBarry Smith if (!a->singlemalloc) { PetscFree(a->i); PetscFree(a->j);} 8132593348eSBarry Smith if (a->diag) PetscFree(a->diag); 8142593348eSBarry Smith if (a->ilen) PetscFree(a->ilen); 8152593348eSBarry Smith if (a->imax) PetscFree(a->imax); 8162593348eSBarry Smith if (a->solve_work) PetscFree(a->solve_work); 817de6a44a3SBarry Smith if (a->mult_work) PetscFree(a->mult_work); 8182593348eSBarry Smith PetscFree(a); 81990f02eecSBarry Smith if (A->mapping) { 82090f02eecSBarry Smith ierr = ISLocalToGlobalMappingDestroy(A->mapping); CHKERRQ(ierr); 82190f02eecSBarry Smith } 822f2655603SLois Curfman McInnes PLogObjectDestroy(A); 823f2655603SLois Curfman McInnes PetscHeaderDestroy(A); 8242593348eSBarry Smith return 0; 8252593348eSBarry Smith } 8262593348eSBarry Smith 8275615d1e5SSatish Balay #undef __FUNC__ 8285eea60f9SBarry Smith #define __FUNC__ "MatSetOption_SeqBAIJ" /* ADIC Ignore */ 8298f6be9afSLois Curfman McInnes int MatSetOption_SeqBAIJ(Mat A,MatOption op) 8302593348eSBarry Smith { 831b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 8326d4a8577SBarry Smith if (op == MAT_ROW_ORIENTED) a->roworiented = 1; 8336d4a8577SBarry Smith else if (op == MAT_COLUMN_ORIENTED) a->roworiented = 0; 8346d4a8577SBarry Smith else if (op == MAT_COLUMNS_SORTED) a->sorted = 1; 835219d9a1aSLois Curfman McInnes else if (op == MAT_COLUMNS_UNSORTED) a->sorted = 0; 8366d4a8577SBarry Smith else if (op == MAT_NO_NEW_NONZERO_LOCATIONS) a->nonew = 1; 837c2653b3dSLois Curfman McInnes else if (op == MAT_NEW_NONZERO_LOCATION_ERROR) a->nonew = -1; 8386d4a8577SBarry Smith else if (op == MAT_YES_NEW_NONZERO_LOCATIONS) a->nonew = 0; 8396d4a8577SBarry Smith else if (op == MAT_ROWS_SORTED || 840219d9a1aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 8416d4a8577SBarry Smith op == MAT_SYMMETRIC || 8426d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 84390f02eecSBarry Smith op == MAT_YES_NEW_DIAGONALS || 844*2b362799SSatish Balay op == MAT_IGNORE_OFF_PROC_ENTRIES) 84594a424c1SBarry Smith PLogInfo(A,"Info:MatSetOption_SeqBAIJ:Option ignored\n"); 8466d4a8577SBarry Smith else if (op == MAT_NO_NEW_DIAGONALS) 847e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");} 8482593348eSBarry Smith else 849e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"unknown option");} 8502593348eSBarry Smith return 0; 8512593348eSBarry Smith } 8522593348eSBarry Smith 8532593348eSBarry Smith 8542593348eSBarry Smith /* -------------------------------------------------------*/ 8552593348eSBarry Smith /* Should check that shapes of vectors and matrices match */ 8562593348eSBarry Smith /* -------------------------------------------------------*/ 857b6490206SBarry Smith #include "pinclude/plapack.h" 858b6490206SBarry Smith 8595615d1e5SSatish Balay #undef __FUNC__ 8605615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_1" 86139b95ed1SBarry Smith static int MatMult_SeqBAIJ_1(Mat A,Vec xx,Vec zz) 8622593348eSBarry Smith { 863b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 86439b95ed1SBarry Smith register Scalar *x,*z,*v,sum; 865c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,n; 8662593348eSBarry Smith 867c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 868c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 869b6490206SBarry Smith 870119a934aSSatish Balay idx = a->j; 871119a934aSSatish Balay v = a->a; 872119a934aSSatish Balay ii = a->i; 873119a934aSSatish Balay 874119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 875119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 876119a934aSSatish Balay sum = 0.0; 877119a934aSSatish Balay while (n--) sum += *v++ * x[*idx++]; 8781a6a6d98SBarry Smith z[i] = sum; 879119a934aSSatish Balay } 880c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 881c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 88239b95ed1SBarry Smith PLogFlops(2*a->nz - a->m); 88339b95ed1SBarry Smith return 0; 88439b95ed1SBarry Smith } 88539b95ed1SBarry Smith 8865615d1e5SSatish Balay #undef __FUNC__ 8875615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_2" 88839b95ed1SBarry Smith static int MatMult_SeqBAIJ_2(Mat A,Vec xx,Vec zz) 88939b95ed1SBarry Smith { 89039b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 89139b95ed1SBarry Smith register Scalar *x,*z,*v,*xb,sum1,sum2; 89239b95ed1SBarry Smith register Scalar x1,x2; 89339b95ed1SBarry Smith int mbs=a->mbs,i,*idx,*ii; 894c16cb8f2SBarry Smith int j,n; 89539b95ed1SBarry Smith 896c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 897c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 89839b95ed1SBarry Smith 89939b95ed1SBarry Smith idx = a->j; 90039b95ed1SBarry Smith v = a->a; 90139b95ed1SBarry Smith ii = a->i; 90239b95ed1SBarry Smith 903119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 904119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 905119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; 906119a934aSSatish Balay for ( j=0; j<n; j++ ) { 907119a934aSSatish Balay xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1]; 908119a934aSSatish Balay sum1 += v[0]*x1 + v[2]*x2; 909119a934aSSatish Balay sum2 += v[1]*x1 + v[3]*x2; 910119a934aSSatish Balay v += 4; 911119a934aSSatish Balay } 9121a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; 913119a934aSSatish Balay z += 2; 914119a934aSSatish Balay } 915c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 916c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 91739b95ed1SBarry Smith PLogFlops(4*a->nz - a->m); 91839b95ed1SBarry Smith return 0; 91939b95ed1SBarry Smith } 92039b95ed1SBarry Smith 9215615d1e5SSatish Balay #undef __FUNC__ 9225615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_3" 92339b95ed1SBarry Smith static int MatMult_SeqBAIJ_3(Mat A,Vec xx,Vec zz) 92439b95ed1SBarry Smith { 92539b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 92639b95ed1SBarry Smith register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3; 927c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 92839b95ed1SBarry Smith 929c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 930c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 93139b95ed1SBarry Smith 93239b95ed1SBarry Smith idx = a->j; 93339b95ed1SBarry Smith v = a->a; 93439b95ed1SBarry Smith ii = a->i; 93539b95ed1SBarry Smith 936119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 937119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 938119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; 939119a934aSSatish Balay for ( j=0; j<n; j++ ) { 940119a934aSSatish Balay xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 941119a934aSSatish Balay sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3; 942119a934aSSatish Balay sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3; 943119a934aSSatish Balay sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3; 944119a934aSSatish Balay v += 9; 945119a934aSSatish Balay } 9461a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; z[2] = sum3; 947119a934aSSatish Balay z += 3; 948119a934aSSatish Balay } 949c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 950c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 95139b95ed1SBarry Smith PLogFlops(18*a->nz - a->m); 95239b95ed1SBarry Smith return 0; 95339b95ed1SBarry Smith } 95439b95ed1SBarry Smith 9555615d1e5SSatish Balay #undef __FUNC__ 9565615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_4" 95739b95ed1SBarry Smith static int MatMult_SeqBAIJ_4(Mat A,Vec xx,Vec zz) 95839b95ed1SBarry Smith { 95939b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 96039b95ed1SBarry Smith register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4; 96139b95ed1SBarry Smith register Scalar x1,x2,x3,x4; 96239b95ed1SBarry Smith int mbs=a->mbs,i,*idx,*ii; 963c16cb8f2SBarry Smith int j,n; 96439b95ed1SBarry Smith 965c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 966c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 96739b95ed1SBarry Smith 96839b95ed1SBarry Smith idx = a->j; 96939b95ed1SBarry Smith v = a->a; 97039b95ed1SBarry Smith ii = a->i; 97139b95ed1SBarry Smith 972119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 973119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 974119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; 975119a934aSSatish Balay for ( j=0; j<n; j++ ) { 976119a934aSSatish Balay xb = x + 4*(*idx++); 977119a934aSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 978119a934aSSatish Balay sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 979119a934aSSatish Balay sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 980119a934aSSatish Balay sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 981119a934aSSatish Balay sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 982119a934aSSatish Balay v += 16; 983119a934aSSatish Balay } 9841a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; 985119a934aSSatish Balay z += 4; 986119a934aSSatish Balay } 987c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 988c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 98939b95ed1SBarry Smith PLogFlops(32*a->nz - a->m); 99039b95ed1SBarry Smith return 0; 99139b95ed1SBarry Smith } 99239b95ed1SBarry Smith 9935615d1e5SSatish Balay #undef __FUNC__ 9945615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_5" 99539b95ed1SBarry Smith static int MatMult_SeqBAIJ_5(Mat A,Vec xx,Vec zz) 99639b95ed1SBarry Smith { 99739b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 99839b95ed1SBarry Smith register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5; 99939b95ed1SBarry Smith register Scalar x1,x2,x3,x4,x5; 1000c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 100139b95ed1SBarry Smith 1002c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1003c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 100439b95ed1SBarry Smith 100539b95ed1SBarry Smith idx = a->j; 100639b95ed1SBarry Smith v = a->a; 100739b95ed1SBarry Smith ii = a->i; 100839b95ed1SBarry Smith 1009119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1010119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1011119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; 1012119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1013119a934aSSatish Balay xb = x + 5*(*idx++); 1014119a934aSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; 1015119a934aSSatish Balay sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 1016119a934aSSatish Balay sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 1017119a934aSSatish Balay sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 1018119a934aSSatish Balay sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 1019119a934aSSatish Balay sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 1020119a934aSSatish Balay v += 25; 1021119a934aSSatish Balay } 10221a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; 1023119a934aSSatish Balay z += 5; 1024119a934aSSatish Balay } 1025c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1026c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 102739b95ed1SBarry Smith PLogFlops(50*a->nz - a->m); 102839b95ed1SBarry Smith return 0; 102939b95ed1SBarry Smith } 103039b95ed1SBarry Smith 10315615d1e5SSatish Balay #undef __FUNC__ 103248e9ddb2SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_7" 103348e9ddb2SSatish Balay static int MatMult_SeqBAIJ_7(Mat A,Vec xx,Vec zz) 103448e9ddb2SSatish Balay { 103548e9ddb2SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 103648e9ddb2SSatish Balay register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7; 103748e9ddb2SSatish Balay register Scalar x1,x2,x3,x4,x5,x6,x7; 103848e9ddb2SSatish Balay int mbs=a->mbs,i,*idx,*ii,j,n; 103948e9ddb2SSatish Balay 104048e9ddb2SSatish Balay VecGetArray_Fast(xx,x); 104148e9ddb2SSatish Balay VecGetArray_Fast(zz,z); 104248e9ddb2SSatish Balay 104348e9ddb2SSatish Balay idx = a->j; 104448e9ddb2SSatish Balay v = a->a; 104548e9ddb2SSatish Balay ii = a->i; 104648e9ddb2SSatish Balay 104748e9ddb2SSatish Balay for ( i=0; i<mbs; i++ ) { 104848e9ddb2SSatish Balay n = ii[1] - ii[0]; ii++; 104948e9ddb2SSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; sum6 = 0.0; sum7 = 0.0; 105048e9ddb2SSatish Balay for ( j=0; j<n; j++ ) { 105148e9ddb2SSatish Balay xb = x + 7*(*idx++); 105248e9ddb2SSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6]; 105348e9ddb2SSatish Balay sum1 += v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 105448e9ddb2SSatish Balay sum2 += v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 105548e9ddb2SSatish Balay sum3 += v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 105648e9ddb2SSatish Balay sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 105748e9ddb2SSatish Balay sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 105848e9ddb2SSatish Balay sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 105948e9ddb2SSatish Balay sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 106048e9ddb2SSatish Balay v += 49; 106148e9ddb2SSatish Balay } 106248e9ddb2SSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7; 106348e9ddb2SSatish Balay z += 7; 106448e9ddb2SSatish Balay } 106548e9ddb2SSatish Balay 106648e9ddb2SSatish Balay VecRestoreArray_Fast(xx,x); 106748e9ddb2SSatish Balay VecRestoreArray_Fast(zz,z); 106848e9ddb2SSatish Balay PLogFlops(98*a->nz - a->m); 106948e9ddb2SSatish Balay return 0; 107048e9ddb2SSatish Balay } 107148e9ddb2SSatish Balay 107248e9ddb2SSatish Balay #undef __FUNC__ 10735615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_N" 107439b95ed1SBarry Smith static int MatMult_SeqBAIJ_N(Mat A,Vec xx,Vec zz) 107539b95ed1SBarry Smith { 107639b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 107739b95ed1SBarry Smith register Scalar *x,*z,*v,*xb; 1078c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2; 1079c16cb8f2SBarry Smith int _One = 1,ncols,k; 1080c16cb8f2SBarry Smith Scalar _DOne = 1.0,*work,*workt,_DZero = 0.0; 108139b95ed1SBarry Smith 1082c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1083c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 108439b95ed1SBarry Smith 108539b95ed1SBarry Smith idx = a->j; 108639b95ed1SBarry Smith v = a->a; 108739b95ed1SBarry Smith ii = a->i; 108839b95ed1SBarry Smith 108939b95ed1SBarry Smith 1090119a934aSSatish Balay if (!a->mult_work) { 10913b547af2SSatish Balay k = PetscMax(a->m,a->n); 10922b3076dcSSatish Balay a->mult_work = (Scalar *) PetscMalloc((k+1)*sizeof(Scalar));CHKPTRQ(a->mult_work); 1093119a934aSSatish Balay } 1094119a934aSSatish Balay work = a->mult_work; 1095119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1096119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1097119a934aSSatish Balay ncols = n*bs; 1098119a934aSSatish Balay workt = work; 1099119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1100119a934aSSatish Balay xb = x + bs*(*idx++); 1101119a934aSSatish Balay for ( k=0; k<bs; k++ ) workt[k] = xb[k]; 1102119a934aSSatish Balay workt += bs; 1103119a934aSSatish Balay } 11041a6a6d98SBarry Smith LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DZero,z,&_One); 1105119a934aSSatish Balay v += n*bs2; 1106119a934aSSatish Balay z += bs; 1107119a934aSSatish Balay } 1108c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1109c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 11101a6a6d98SBarry Smith PLogFlops(2*a->nz*bs2 - a->m); 1111bb42667fSSatish Balay return 0; 1112bb42667fSSatish Balay } 1113bb42667fSSatish Balay 11145615d1e5SSatish Balay #undef __FUNC__ 11155615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_1" 1116f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_1(Mat A,Vec xx,Vec yy,Vec zz) 1117f44d3a6dSSatish Balay { 1118f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1119f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,sum; 1120c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,n; 1121f44d3a6dSSatish Balay 1122c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1123c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1124c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1125f44d3a6dSSatish Balay 1126f44d3a6dSSatish Balay idx = a->j; 1127f44d3a6dSSatish Balay v = a->a; 1128f44d3a6dSSatish Balay ii = a->i; 1129f44d3a6dSSatish Balay 1130f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1131f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1132f44d3a6dSSatish Balay sum = y[i]; 1133f44d3a6dSSatish Balay while (n--) sum += *v++ * x[*idx++]; 1134f44d3a6dSSatish Balay z[i] = sum; 1135f44d3a6dSSatish Balay } 1136c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1137c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1138c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1139f44d3a6dSSatish Balay PLogFlops(2*a->nz); 1140f44d3a6dSSatish Balay return 0; 1141f44d3a6dSSatish Balay } 1142f44d3a6dSSatish Balay 11435615d1e5SSatish Balay #undef __FUNC__ 11445615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_2" 1145f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_2(Mat A,Vec xx,Vec yy,Vec zz) 1146f44d3a6dSSatish Balay { 1147f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1148f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2; 1149f44d3a6dSSatish Balay register Scalar x1,x2; 1150f44d3a6dSSatish Balay int mbs=a->mbs,i,*idx,*ii; 1151c16cb8f2SBarry Smith int j,n; 1152f44d3a6dSSatish Balay 1153c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1154c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1155c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1156f44d3a6dSSatish Balay 1157f44d3a6dSSatish Balay idx = a->j; 1158f44d3a6dSSatish Balay v = a->a; 1159f44d3a6dSSatish Balay ii = a->i; 1160f44d3a6dSSatish Balay 1161f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1162f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1163f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; 1164f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1165f44d3a6dSSatish Balay xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1]; 1166f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[2]*x2; 1167f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[3]*x2; 1168f44d3a6dSSatish Balay v += 4; 1169f44d3a6dSSatish Balay } 1170f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; 1171f44d3a6dSSatish Balay z += 2; y += 2; 1172f44d3a6dSSatish Balay } 1173c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1174c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1175c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1176f44d3a6dSSatish Balay PLogFlops(4*a->nz); 1177f44d3a6dSSatish Balay return 0; 1178f44d3a6dSSatish Balay } 1179f44d3a6dSSatish Balay 11805615d1e5SSatish Balay #undef __FUNC__ 11815615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_3" 1182f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_3(Mat A,Vec xx,Vec yy,Vec zz) 1183f44d3a6dSSatish Balay { 1184f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1185f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3; 1186c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 1187f44d3a6dSSatish Balay 1188c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1189c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1190c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1191f44d3a6dSSatish Balay 1192f44d3a6dSSatish Balay idx = a->j; 1193f44d3a6dSSatish Balay v = a->a; 1194f44d3a6dSSatish Balay ii = a->i; 1195f44d3a6dSSatish Balay 1196f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1197f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1198f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; 1199f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1200f44d3a6dSSatish Balay xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1201f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3; 1202f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3; 1203f44d3a6dSSatish Balay sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3; 1204f44d3a6dSSatish Balay v += 9; 1205f44d3a6dSSatish Balay } 1206f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; 1207f44d3a6dSSatish Balay z += 3; y += 3; 1208f44d3a6dSSatish Balay } 1209c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1210c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1211c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1212f44d3a6dSSatish Balay PLogFlops(18*a->nz); 1213f44d3a6dSSatish Balay return 0; 1214f44d3a6dSSatish Balay } 1215f44d3a6dSSatish Balay 12165615d1e5SSatish Balay #undef __FUNC__ 12175615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_4" 1218f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_4(Mat A,Vec xx,Vec yy,Vec zz) 1219f44d3a6dSSatish Balay { 1220f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1221f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4; 1222f44d3a6dSSatish Balay register Scalar x1,x2,x3,x4; 1223f44d3a6dSSatish Balay int mbs=a->mbs,i,*idx,*ii; 1224c16cb8f2SBarry Smith int j,n; 1225f44d3a6dSSatish Balay 1226c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1227c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1228c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1229f44d3a6dSSatish Balay 1230f44d3a6dSSatish Balay idx = a->j; 1231f44d3a6dSSatish Balay v = a->a; 1232f44d3a6dSSatish Balay ii = a->i; 1233f44d3a6dSSatish Balay 1234f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1235f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1236f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; 1237f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1238f44d3a6dSSatish Balay xb = x + 4*(*idx++); 1239f44d3a6dSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 1240f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 1241f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 1242f44d3a6dSSatish Balay sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 1243f44d3a6dSSatish Balay sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 1244f44d3a6dSSatish Balay v += 16; 1245f44d3a6dSSatish Balay } 1246f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; 1247f44d3a6dSSatish Balay z += 4; y += 4; 1248f44d3a6dSSatish Balay } 1249c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1250c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1251c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1252f44d3a6dSSatish Balay PLogFlops(32*a->nz); 1253f44d3a6dSSatish Balay return 0; 1254f44d3a6dSSatish Balay } 1255f44d3a6dSSatish Balay 12565615d1e5SSatish Balay #undef __FUNC__ 12575615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_5" 1258f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_5(Mat A,Vec xx,Vec yy,Vec zz) 1259f44d3a6dSSatish Balay { 1260f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1261f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5; 1262f44d3a6dSSatish Balay register Scalar x1,x2,x3,x4,x5; 1263c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 1264f44d3a6dSSatish Balay 1265c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1266c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1267c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1268f44d3a6dSSatish Balay 1269f44d3a6dSSatish Balay idx = a->j; 1270f44d3a6dSSatish Balay v = a->a; 1271f44d3a6dSSatish Balay ii = a->i; 1272f44d3a6dSSatish Balay 1273f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1274f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1275f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; 1276f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1277f44d3a6dSSatish Balay xb = x + 5*(*idx++); 1278f44d3a6dSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; 1279f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 1280f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 1281f44d3a6dSSatish Balay sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 1282f44d3a6dSSatish Balay sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 1283f44d3a6dSSatish Balay sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 1284f44d3a6dSSatish Balay v += 25; 1285f44d3a6dSSatish Balay } 1286f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; 1287f44d3a6dSSatish Balay z += 5; y += 5; 1288f44d3a6dSSatish Balay } 1289c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1290c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1291c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1292f44d3a6dSSatish Balay PLogFlops(50*a->nz); 1293f44d3a6dSSatish Balay return 0; 1294f44d3a6dSSatish Balay } 1295f44d3a6dSSatish Balay 12965615d1e5SSatish Balay #undef __FUNC__ 129748e9ddb2SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_7" 129848e9ddb2SSatish Balay static int MatMultAdd_SeqBAIJ_7(Mat A,Vec xx,Vec yy,Vec zz) 129948e9ddb2SSatish Balay { 130048e9ddb2SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 130148e9ddb2SSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7; 130248e9ddb2SSatish Balay register Scalar x1,x2,x3,x4,x5,x6,x7; 130348e9ddb2SSatish Balay int mbs=a->mbs,i,*idx,*ii,j,n; 130448e9ddb2SSatish Balay 130548e9ddb2SSatish Balay VecGetArray_Fast(xx,x); 130648e9ddb2SSatish Balay VecGetArray_Fast(yy,y); 130748e9ddb2SSatish Balay VecGetArray_Fast(zz,z); 130848e9ddb2SSatish Balay 130948e9ddb2SSatish Balay idx = a->j; 131048e9ddb2SSatish Balay v = a->a; 131148e9ddb2SSatish Balay ii = a->i; 131248e9ddb2SSatish Balay 131348e9ddb2SSatish Balay for ( i=0; i<mbs; i++ ) { 131448e9ddb2SSatish Balay n = ii[1] - ii[0]; ii++; 131548e9ddb2SSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; sum6 = y[5]; sum7 = y[6]; 131648e9ddb2SSatish Balay for ( j=0; j<n; j++ ) { 131748e9ddb2SSatish Balay xb = x + 7*(*idx++); 131848e9ddb2SSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6]; 131948e9ddb2SSatish Balay sum1 += v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 132048e9ddb2SSatish Balay sum2 += v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 132148e9ddb2SSatish Balay sum3 += v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 132248e9ddb2SSatish Balay sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 132348e9ddb2SSatish Balay sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 132448e9ddb2SSatish Balay sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 132548e9ddb2SSatish Balay sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 132648e9ddb2SSatish Balay v += 49; 132748e9ddb2SSatish Balay } 132848e9ddb2SSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7; 132948e9ddb2SSatish Balay z += 7; y += 7; 133048e9ddb2SSatish Balay } 133148e9ddb2SSatish Balay VecRestoreArray_Fast(xx,x); 133248e9ddb2SSatish Balay VecRestoreArray_Fast(yy,y); 133348e9ddb2SSatish Balay VecRestoreArray_Fast(zz,z); 133448e9ddb2SSatish Balay PLogFlops(98*a->nz); 133548e9ddb2SSatish Balay return 0; 133648e9ddb2SSatish Balay } 133748e9ddb2SSatish Balay 133848e9ddb2SSatish Balay 133948e9ddb2SSatish Balay #undef __FUNC__ 13405615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_N" 1341f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_N(Mat A,Vec xx,Vec yy,Vec zz) 1342f44d3a6dSSatish Balay { 1343f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1344f44d3a6dSSatish Balay register Scalar *x,*z,*v,*xb; 1345f44d3a6dSSatish Balay int mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2,ierr; 1346f44d3a6dSSatish Balay int _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt; 1347f44d3a6dSSatish Balay 1348f44d3a6dSSatish Balay if ( xx != yy) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); } 1349f44d3a6dSSatish Balay 1350c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1351c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1352f44d3a6dSSatish Balay 1353f44d3a6dSSatish Balay idx = a->j; 1354f44d3a6dSSatish Balay v = a->a; 1355f44d3a6dSSatish Balay ii = a->i; 1356f44d3a6dSSatish Balay 1357f44d3a6dSSatish Balay 1358f44d3a6dSSatish Balay if (!a->mult_work) { 1359f44d3a6dSSatish Balay k = PetscMax(a->m,a->n); 1360f44d3a6dSSatish Balay a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));CHKPTRQ(a->mult_work); 1361f44d3a6dSSatish Balay } 1362f44d3a6dSSatish Balay work = a->mult_work; 1363f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1364f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1365f44d3a6dSSatish Balay ncols = n*bs; 1366f44d3a6dSSatish Balay workt = work; 1367f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1368f44d3a6dSSatish Balay xb = x + bs*(*idx++); 1369f44d3a6dSSatish Balay for ( k=0; k<bs; k++ ) workt[k] = xb[k]; 1370f44d3a6dSSatish Balay workt += bs; 1371f44d3a6dSSatish Balay } 1372f44d3a6dSSatish Balay LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DOne,z,&_One); 1373f44d3a6dSSatish Balay v += n*bs2; 1374f44d3a6dSSatish Balay z += bs; 1375f44d3a6dSSatish Balay } 1376c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1377c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1378f44d3a6dSSatish Balay PLogFlops(2*a->nz*bs2 ); 1379f44d3a6dSSatish Balay return 0; 1380f44d3a6dSSatish Balay } 1381f44d3a6dSSatish Balay 13825615d1e5SSatish Balay #undef __FUNC__ 13835615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_SeqBAIJ" 13848f6be9afSLois Curfman McInnes int MatMultTrans_SeqBAIJ(Mat A,Vec xx,Vec zz) 1385bb42667fSSatish Balay { 1386bb42667fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 13871a6a6d98SBarry Smith Scalar *xg,*zg,*zb; 1388bb42667fSSatish Balay register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5; 1389bb1453f0SSatish Balay int mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n; 13909df24120SSatish Balay int bs=a->bs,j,n,bs2=a->bs2,*ib,ierr; 1391119a934aSSatish Balay 1392119a934aSSatish Balay 139390f02eecSBarry Smith VecGetArray_Fast(xx,xg); x = xg; 139490f02eecSBarry Smith VecGetArray_Fast(zz,zg); z = zg; 1395bb1453f0SSatish Balay PetscMemzero(z,N*sizeof(Scalar)); 1396bb42667fSSatish Balay 1397119a934aSSatish Balay idx = a->j; 1398119a934aSSatish Balay v = a->a; 1399119a934aSSatish Balay ii = a->i; 1400119a934aSSatish Balay 1401119a934aSSatish Balay switch (bs) { 1402119a934aSSatish Balay case 1: 1403119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1404119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1405119a934aSSatish Balay xb = x + i; x1 = xb[0]; 1406119a934aSSatish Balay ib = idx + ai[i]; 1407119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1408bb1453f0SSatish Balay rval = ib[j]; 1409bb1453f0SSatish Balay z[rval] += *v++ * x1; 1410119a934aSSatish Balay } 1411119a934aSSatish Balay } 1412119a934aSSatish Balay break; 1413119a934aSSatish Balay case 2: 1414119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1415119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1416119a934aSSatish Balay xb = x + 2*i; x1 = xb[0]; x2 = xb[1]; 1417119a934aSSatish Balay ib = idx + ai[i]; 1418119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1419119a934aSSatish Balay rval = ib[j]*2; 1420bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2; 1421bb1453f0SSatish Balay z[rval++] += v[2]*x1 + v[3]*x2; 1422119a934aSSatish Balay v += 4; 1423119a934aSSatish Balay } 1424119a934aSSatish Balay } 1425119a934aSSatish Balay break; 1426119a934aSSatish Balay case 3: 1427119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1428119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1429119a934aSSatish Balay xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1430119a934aSSatish Balay ib = idx + ai[i]; 1431119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1432119a934aSSatish Balay rval = ib[j]*3; 1433bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3; 1434bb1453f0SSatish Balay z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3; 1435bb1453f0SSatish Balay z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3; 1436119a934aSSatish Balay v += 9; 1437119a934aSSatish Balay } 1438119a934aSSatish Balay } 1439119a934aSSatish Balay break; 1440119a934aSSatish Balay case 4: 1441119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1442119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1443119a934aSSatish Balay xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 1444119a934aSSatish Balay ib = idx + ai[i]; 1445119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1446119a934aSSatish Balay rval = ib[j]*4; 1447bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4; 1448bb1453f0SSatish Balay z[rval++] += v[4]*x1 + v[5]*x2 + v[6]*x3 + v[7]*x4; 1449bb1453f0SSatish Balay z[rval++] += v[8]*x1 + v[9]*x2 + v[10]*x3 + v[11]*x4; 1450bb1453f0SSatish Balay z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4; 1451119a934aSSatish Balay v += 16; 1452119a934aSSatish Balay } 1453119a934aSSatish Balay } 1454119a934aSSatish Balay break; 1455119a934aSSatish Balay case 5: 1456119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1457119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1458119a934aSSatish Balay xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1459119a934aSSatish Balay x4 = xb[3]; x5 = xb[4]; 1460119a934aSSatish Balay ib = idx + ai[i]; 1461119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1462119a934aSSatish Balay rval = ib[j]*5; 1463bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4 + v[4]*x5; 1464bb1453f0SSatish Balay z[rval++] += v[5]*x1 + v[6]*x2 + v[7]*x3 + v[8]*x4 + v[9]*x5; 1465bb1453f0SSatish Balay z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5; 1466bb1453f0SSatish Balay z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5; 1467bb1453f0SSatish Balay z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5; 1468119a934aSSatish Balay v += 25; 1469119a934aSSatish Balay } 1470119a934aSSatish Balay } 1471119a934aSSatish Balay break; 1472119a934aSSatish Balay /* block sizes larger then 5 by 5 are handled by BLAS */ 1473119a934aSSatish Balay default: { 1474119a934aSSatish Balay int _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt; 1475119a934aSSatish Balay if (!a->mult_work) { 14763b547af2SSatish Balay k = PetscMax(a->m,a->n); 1477bb42667fSSatish Balay a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar)); 1478119a934aSSatish Balay CHKPTRQ(a->mult_work); 1479119a934aSSatish Balay } 1480119a934aSSatish Balay work = a->mult_work; 1481119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1482119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1483119a934aSSatish Balay ncols = n*bs; 1484119a934aSSatish Balay PetscMemzero(work,ncols*sizeof(Scalar)); 1485119a934aSSatish Balay LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One); 1486119a934aSSatish Balay v += n*bs2; 1487119a934aSSatish Balay x += bs; 1488119a934aSSatish Balay workt = work; 1489119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1490119a934aSSatish Balay zb = z + bs*(*idx++); 1491bb1453f0SSatish Balay for ( k=0; k<bs; k++ ) zb[k] += workt[k] ; 1492119a934aSSatish Balay workt += bs; 1493119a934aSSatish Balay } 1494119a934aSSatish Balay } 1495119a934aSSatish Balay } 1496119a934aSSatish Balay } 14970419e6cdSSatish Balay ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr); 14980419e6cdSSatish Balay ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr); 1499faf6580fSSatish Balay PLogFlops(2*a->nz*a->bs2 - a->n); 1500faf6580fSSatish Balay return 0; 1501faf6580fSSatish Balay } 15021c351548SSatish Balay 15035615d1e5SSatish Balay #undef __FUNC__ 15045615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_SeqBAIJ" 15058f6be9afSLois Curfman McInnes int MatMultTransAdd_SeqBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1506faf6580fSSatish Balay { 1507faf6580fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1508faf6580fSSatish Balay Scalar *xg,*zg,*zb; 1509faf6580fSSatish Balay register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5; 1510faf6580fSSatish Balay int mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n; 1511faf6580fSSatish Balay int bs=a->bs,j,n,bs2=a->bs2,*ib,ierr; 1512faf6580fSSatish Balay 1513faf6580fSSatish Balay 1514faf6580fSSatish Balay 151590f02eecSBarry Smith VecGetArray_Fast(xx,xg); x = xg; 151690f02eecSBarry Smith VecGetArray_Fast(zz,zg); z = zg; 1517faf6580fSSatish Balay 1518648c1d95SSatish Balay if ( yy != zz ) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); } 1519648c1d95SSatish Balay else PetscMemzero(z,N*sizeof(Scalar)); 1520648c1d95SSatish Balay 1521faf6580fSSatish Balay 1522faf6580fSSatish Balay idx = a->j; 1523faf6580fSSatish Balay v = a->a; 1524faf6580fSSatish Balay ii = a->i; 1525faf6580fSSatish Balay 1526faf6580fSSatish Balay switch (bs) { 1527faf6580fSSatish Balay case 1: 1528faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1529faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1530faf6580fSSatish Balay xb = x + i; x1 = xb[0]; 1531faf6580fSSatish Balay ib = idx + ai[i]; 1532faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1533faf6580fSSatish Balay rval = ib[j]; 1534faf6580fSSatish Balay z[rval] += *v++ * x1; 1535faf6580fSSatish Balay } 1536faf6580fSSatish Balay } 1537faf6580fSSatish Balay break; 1538faf6580fSSatish Balay case 2: 1539faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1540faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1541faf6580fSSatish Balay xb = x + 2*i; x1 = xb[0]; x2 = xb[1]; 1542faf6580fSSatish Balay ib = idx + ai[i]; 1543faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1544faf6580fSSatish Balay rval = ib[j]*2; 1545faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2; 1546faf6580fSSatish Balay z[rval++] += v[2]*x1 + v[3]*x2; 1547faf6580fSSatish Balay v += 4; 1548faf6580fSSatish Balay } 1549faf6580fSSatish Balay } 1550faf6580fSSatish Balay break; 1551faf6580fSSatish Balay case 3: 1552faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1553faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1554faf6580fSSatish Balay xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1555faf6580fSSatish Balay ib = idx + ai[i]; 1556faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1557faf6580fSSatish Balay rval = ib[j]*3; 1558faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3; 1559faf6580fSSatish Balay z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3; 1560faf6580fSSatish Balay z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3; 1561faf6580fSSatish Balay v += 9; 1562faf6580fSSatish Balay } 1563faf6580fSSatish Balay } 1564faf6580fSSatish Balay break; 1565faf6580fSSatish Balay case 4: 1566faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1567faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1568faf6580fSSatish Balay xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 1569faf6580fSSatish Balay ib = idx + ai[i]; 1570faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1571faf6580fSSatish Balay rval = ib[j]*4; 1572faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4; 1573faf6580fSSatish Balay z[rval++] += v[4]*x1 + v[5]*x2 + v[6]*x3 + v[7]*x4; 1574faf6580fSSatish Balay z[rval++] += v[8]*x1 + v[9]*x2 + v[10]*x3 + v[11]*x4; 1575faf6580fSSatish Balay z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4; 1576faf6580fSSatish Balay v += 16; 1577faf6580fSSatish Balay } 1578faf6580fSSatish Balay } 1579faf6580fSSatish Balay break; 1580faf6580fSSatish Balay case 5: 1581faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1582faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1583faf6580fSSatish Balay xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1584faf6580fSSatish Balay x4 = xb[3]; x5 = xb[4]; 1585faf6580fSSatish Balay ib = idx + ai[i]; 1586faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1587faf6580fSSatish Balay rval = ib[j]*5; 1588faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4 + v[4]*x5; 1589faf6580fSSatish Balay z[rval++] += v[5]*x1 + v[6]*x2 + v[7]*x3 + v[8]*x4 + v[9]*x5; 1590faf6580fSSatish Balay z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5; 1591faf6580fSSatish Balay z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5; 1592faf6580fSSatish Balay z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5; 1593faf6580fSSatish Balay v += 25; 1594faf6580fSSatish Balay } 1595faf6580fSSatish Balay } 1596faf6580fSSatish Balay break; 1597faf6580fSSatish Balay /* block sizes larger then 5 by 5 are handled by BLAS */ 1598faf6580fSSatish Balay default: { 1599faf6580fSSatish Balay int _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt; 1600faf6580fSSatish Balay if (!a->mult_work) { 1601faf6580fSSatish Balay k = PetscMax(a->m,a->n); 1602faf6580fSSatish Balay a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar)); 1603faf6580fSSatish Balay CHKPTRQ(a->mult_work); 1604faf6580fSSatish Balay } 1605faf6580fSSatish Balay work = a->mult_work; 1606faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1607faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1608faf6580fSSatish Balay ncols = n*bs; 1609faf6580fSSatish Balay PetscMemzero(work,ncols*sizeof(Scalar)); 1610faf6580fSSatish Balay LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One); 1611faf6580fSSatish Balay v += n*bs2; 1612faf6580fSSatish Balay x += bs; 1613faf6580fSSatish Balay workt = work; 1614faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1615faf6580fSSatish Balay zb = z + bs*(*idx++); 1616faf6580fSSatish Balay for ( k=0; k<bs; k++ ) zb[k] += workt[k] ; 1617faf6580fSSatish Balay workt += bs; 1618faf6580fSSatish Balay } 1619faf6580fSSatish Balay } 1620faf6580fSSatish Balay } 1621faf6580fSSatish Balay } 1622faf6580fSSatish Balay ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr); 1623faf6580fSSatish Balay ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr); 1624faf6580fSSatish Balay PLogFlops(2*a->nz*a->bs2); 16252593348eSBarry Smith return 0; 16262593348eSBarry Smith } 16272593348eSBarry Smith 16285615d1e5SSatish Balay #undef __FUNC__ 16295eea60f9SBarry Smith #define __FUNC__ "MatGetInfo_SeqBAIJ" /* ADIC Ignore */ 16308f6be9afSLois Curfman McInnes int MatGetInfo_SeqBAIJ(Mat A,MatInfoType flag,MatInfo *info) 16312593348eSBarry Smith { 1632b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 16334e220ebcSLois Curfman McInnes 16344e220ebcSLois Curfman McInnes info->rows_global = (double)a->m; 16354e220ebcSLois Curfman McInnes info->columns_global = (double)a->n; 16364e220ebcSLois Curfman McInnes info->rows_local = (double)a->m; 16374e220ebcSLois Curfman McInnes info->columns_local = (double)a->n; 16384e220ebcSLois Curfman McInnes info->block_size = a->bs2; 16394e220ebcSLois Curfman McInnes info->nz_allocated = a->maxnz; 16404e220ebcSLois Curfman McInnes info->nz_used = a->bs2*a->nz; 16414e220ebcSLois Curfman McInnes info->nz_unneeded = (double)(info->nz_allocated - info->nz_used); 16424e220ebcSLois Curfman McInnes /* if (info->nz_unneeded != A->info.nz_unneeded) 16434e220ebcSLois Curfman McInnes printf("space descrepancy: maxnz-nz = %d, nz_unneeded = %d\n",(int)info->nz_unneeded,(int)A->info.nz_unneeded); */ 16444e220ebcSLois Curfman McInnes info->assemblies = A->num_ass; 16454e220ebcSLois Curfman McInnes info->mallocs = a->reallocs; 16464e220ebcSLois Curfman McInnes info->memory = A->mem; 16474e220ebcSLois Curfman McInnes if (A->factor) { 16484e220ebcSLois Curfman McInnes info->fill_ratio_given = A->info.fill_ratio_given; 16494e220ebcSLois Curfman McInnes info->fill_ratio_needed = A->info.fill_ratio_needed; 16504e220ebcSLois Curfman McInnes info->factor_mallocs = A->info.factor_mallocs; 16514e220ebcSLois Curfman McInnes } else { 16524e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 16534e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16544e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16554e220ebcSLois Curfman McInnes } 16562593348eSBarry Smith return 0; 16572593348eSBarry Smith } 16582593348eSBarry Smith 16595615d1e5SSatish Balay #undef __FUNC__ 16605615d1e5SSatish Balay #define __FUNC__ "MatEqual_SeqBAIJ" 16618f6be9afSLois Curfman McInnes int MatEqual_SeqBAIJ(Mat A,Mat B, PetscTruth* flg) 166291d316f6SSatish Balay { 166391d316f6SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 166491d316f6SSatish Balay 1665e3372554SBarry Smith if (B->type !=MATSEQBAIJ)SETERRQ(1,0,"Matrices must be same type"); 166691d316f6SSatish Balay 166791d316f6SSatish Balay /* If the matrix/block dimensions are not equal, or no of nonzeros or shift */ 166891d316f6SSatish Balay if ((a->m != b->m) || (a->n !=b->n) || (a->bs != b->bs)|| 1669a7c10996SSatish Balay (a->nz != b->nz)) { 167091d316f6SSatish Balay *flg = PETSC_FALSE; return 0; 167191d316f6SSatish Balay } 167291d316f6SSatish Balay 167391d316f6SSatish Balay /* if the a->i are the same */ 167491d316f6SSatish Balay if (PetscMemcmp(a->i,b->i, (a->mbs+1)*sizeof(int))) { 167591d316f6SSatish Balay *flg = PETSC_FALSE; return 0; 167691d316f6SSatish Balay } 167791d316f6SSatish Balay 167891d316f6SSatish Balay /* if a->j are the same */ 167991d316f6SSatish Balay if (PetscMemcmp(a->j,b->j,(a->nz)*sizeof(int))) { 168091d316f6SSatish Balay *flg = PETSC_FALSE; return 0; 168191d316f6SSatish Balay } 168291d316f6SSatish Balay 168391d316f6SSatish Balay /* if a->a are the same */ 168491d316f6SSatish Balay if (PetscMemcmp(a->a, b->a,(a->nz)*(a->bs)*(a->bs)*sizeof(Scalar))) { 168591d316f6SSatish Balay *flg = PETSC_FALSE; return 0; 168691d316f6SSatish Balay } 168791d316f6SSatish Balay *flg = PETSC_TRUE; 168891d316f6SSatish Balay return 0; 168991d316f6SSatish Balay 169091d316f6SSatish Balay } 169191d316f6SSatish Balay 16925615d1e5SSatish Balay #undef __FUNC__ 16935615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_SeqBAIJ" 16948f6be9afSLois Curfman McInnes int MatGetDiagonal_SeqBAIJ(Mat A,Vec v) 169591d316f6SSatish Balay { 169691d316f6SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 16977e67e3f9SSatish Balay int i,j,k,n,row,bs,*ai,*aj,ambs,bs2; 169817e48fc4SSatish Balay Scalar *x, zero = 0.0,*aa,*aa_j; 169917e48fc4SSatish Balay 17000513a670SBarry Smith if (A->factor) SETERRQ(1,0,"Not for factored matrix"); 170117e48fc4SSatish Balay bs = a->bs; 170217e48fc4SSatish Balay aa = a->a; 170317e48fc4SSatish Balay ai = a->i; 170417e48fc4SSatish Balay aj = a->j; 170517e48fc4SSatish Balay ambs = a->mbs; 17069df24120SSatish Balay bs2 = a->bs2; 170791d316f6SSatish Balay 170891d316f6SSatish Balay VecSet(&zero,v); 170990f02eecSBarry Smith VecGetArray_Fast(v,x); VecGetLocalSize_Fast(v,n); 1710e3372554SBarry Smith if (n != a->m) SETERRQ(1,0,"Nonconforming matrix and vector"); 171117e48fc4SSatish Balay for ( i=0; i<ambs; i++ ) { 171217e48fc4SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 171317e48fc4SSatish Balay if (aj[j] == i) { 171417e48fc4SSatish Balay row = i*bs; 17157e67e3f9SSatish Balay aa_j = aa+j*bs2; 17167e67e3f9SSatish Balay for (k=0; k<bs2; k+=(bs+1),row++) x[row] = aa_j[k]; 171791d316f6SSatish Balay break; 171891d316f6SSatish Balay } 171991d316f6SSatish Balay } 172091d316f6SSatish Balay } 172191d316f6SSatish Balay return 0; 172291d316f6SSatish Balay } 172391d316f6SSatish Balay 17245615d1e5SSatish Balay #undef __FUNC__ 17255615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_SeqBAIJ" 17268f6be9afSLois Curfman McInnes int MatDiagonalScale_SeqBAIJ(Mat A,Vec ll,Vec rr) 17279867e207SSatish Balay { 17289867e207SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 17299867e207SSatish Balay Scalar *l,*r,x,*v,*aa,*li,*ri; 17307e67e3f9SSatish Balay int i,j,k,lm,rn,M,m,n,*ai,*aj,mbs,tmp,bs,bs2; 17319867e207SSatish Balay 17329867e207SSatish Balay ai = a->i; 17339867e207SSatish Balay aj = a->j; 17349867e207SSatish Balay aa = a->a; 17359867e207SSatish Balay m = a->m; 17369867e207SSatish Balay n = a->n; 17379867e207SSatish Balay bs = a->bs; 17389867e207SSatish Balay mbs = a->mbs; 17399df24120SSatish Balay bs2 = a->bs2; 17409867e207SSatish Balay if (ll) { 174190f02eecSBarry Smith VecGetArray_Fast(ll,l); VecGetLocalSize_Fast(ll,lm); 1742e3372554SBarry Smith if (lm != m) SETERRQ(1,0,"Left scaling vector wrong length"); 17439867e207SSatish Balay for ( i=0; i<mbs; i++ ) { /* for each block row */ 17449867e207SSatish Balay M = ai[i+1] - ai[i]; 17459867e207SSatish Balay li = l + i*bs; 17467e67e3f9SSatish Balay v = aa + bs2*ai[i]; 17479867e207SSatish Balay for ( j=0; j<M; j++ ) { /* for each block */ 17487e67e3f9SSatish Balay for ( k=0; k<bs2; k++ ) { 17499867e207SSatish Balay (*v++) *= li[k%bs]; 17509867e207SSatish Balay } 17519867e207SSatish Balay } 17529867e207SSatish Balay } 17539867e207SSatish Balay } 17549867e207SSatish Balay 17559867e207SSatish Balay if (rr) { 175690f02eecSBarry Smith VecGetArray_Fast(rr,r); VecGetLocalSize_Fast(rr,rn); 1757e3372554SBarry Smith if (rn != n) SETERRQ(1,0,"Right scaling vector wrong length"); 17589867e207SSatish Balay for ( i=0; i<mbs; i++ ) { /* for each block row */ 17599867e207SSatish Balay M = ai[i+1] - ai[i]; 17607e67e3f9SSatish Balay v = aa + bs2*ai[i]; 17619867e207SSatish Balay for ( j=0; j<M; j++ ) { /* for each block */ 17629867e207SSatish Balay ri = r + bs*aj[ai[i]+j]; 17639867e207SSatish Balay for ( k=0; k<bs; k++ ) { 17649867e207SSatish Balay x = ri[k]; 17659867e207SSatish Balay for ( tmp=0; tmp<bs; tmp++ ) (*v++) *= x; 17669867e207SSatish Balay } 17679867e207SSatish Balay } 17689867e207SSatish Balay } 17699867e207SSatish Balay } 17709867e207SSatish Balay return 0; 17719867e207SSatish Balay } 17729867e207SSatish Balay 17739867e207SSatish Balay 1774b6490206SBarry Smith extern int MatLUFactorSymbolic_SeqBAIJ(Mat,IS,IS,double,Mat*); 1775b6490206SBarry Smith extern int MatLUFactor_SeqBAIJ(Mat,IS,IS,double); 17762a38ea04SSatish Balay extern int MatIncreaseOverlap_SeqBAIJ(Mat,int,IS*,int); 1777736121d4SSatish Balay extern int MatGetSubMatrix_SeqBAIJ(Mat,IS,IS,MatGetSubMatrixCall,Mat*); 1778736121d4SSatish Balay extern int MatGetSubMatrices_SeqBAIJ(Mat,int,IS*,IS*,MatGetSubMatrixCall,Mat**); 17791a6a6d98SBarry Smith 17801a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_N(Mat,Vec,Vec); 17811a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_1(Mat,Vec,Vec); 17821a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_2(Mat,Vec,Vec); 17831a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_3(Mat,Vec,Vec); 17841a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_4(Mat,Vec,Vec); 17851a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_5(Mat,Vec,Vec); 178648e9ddb2SSatish Balay extern int MatSolve_SeqBAIJ_7(Mat,Vec,Vec); 17871a6a6d98SBarry Smith 17887fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_N(Mat,Mat*); 17897fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_1(Mat,Mat*); 17907fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_2(Mat,Mat*); 17917fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_3(Mat,Mat*); 17927fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_4(Mat,Mat*); 17937fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_5(Mat,Mat*); 17942593348eSBarry Smith 17955615d1e5SSatish Balay #undef __FUNC__ 17965615d1e5SSatish Balay #define __FUNC__ "MatNorm_SeqBAIJ" 17978f6be9afSLois Curfman McInnes int MatNorm_SeqBAIJ(Mat A,NormType type,double *norm) 17982593348eSBarry Smith { 1799b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 18002593348eSBarry Smith Scalar *v = a->a; 18012593348eSBarry Smith double sum = 0.0; 18029df24120SSatish Balay int i,nz=a->nz,bs2=a->bs2; 18032593348eSBarry Smith 18042593348eSBarry Smith if (type == NORM_FROBENIUS) { 18050419e6cdSSatish Balay for (i=0; i< bs2*nz; i++ ) { 18062593348eSBarry Smith #if defined(PETSC_COMPLEX) 18072593348eSBarry Smith sum += real(conj(*v)*(*v)); v++; 18082593348eSBarry Smith #else 18092593348eSBarry Smith sum += (*v)*(*v); v++; 18102593348eSBarry Smith #endif 18112593348eSBarry Smith } 18122593348eSBarry Smith *norm = sqrt(sum); 18132593348eSBarry Smith } 18142593348eSBarry Smith else { 1815e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 18162593348eSBarry Smith } 18172593348eSBarry Smith return 0; 18182593348eSBarry Smith } 18192593348eSBarry Smith 18202593348eSBarry Smith /* 18212593348eSBarry Smith note: This can only work for identity for row and col. It would 18222593348eSBarry Smith be good to check this and otherwise generate an error. 18232593348eSBarry Smith */ 18245615d1e5SSatish Balay #undef __FUNC__ 18255615d1e5SSatish Balay #define __FUNC__ "MatILUFactor_SeqBAIJ" 18268f6be9afSLois Curfman McInnes int MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,double efill,int fill) 18272593348eSBarry Smith { 1828b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data; 18292593348eSBarry Smith Mat outA; 1830de6a44a3SBarry Smith int ierr; 18312593348eSBarry Smith 1832e3372554SBarry Smith if (fill != 0) SETERRQ(1,0,"Only fill=0 supported"); 18332593348eSBarry Smith 18342593348eSBarry Smith outA = inA; 18352593348eSBarry Smith inA->factor = FACTOR_LU; 18362593348eSBarry Smith a->row = row; 18372593348eSBarry Smith a->col = col; 18382593348eSBarry Smith 1839de6a44a3SBarry Smith a->solve_work = (Scalar *) PetscMalloc((a->m+a->bs)*sizeof(Scalar));CHKPTRQ(a->solve_work); 18402593348eSBarry Smith 18412593348eSBarry Smith if (!a->diag) { 1842b6490206SBarry Smith ierr = MatMarkDiag_SeqBAIJ(inA); CHKERRQ(ierr); 18432593348eSBarry Smith } 18447fc0212eSBarry Smith ierr = MatLUFactorNumeric(inA,&outA); CHKERRQ(ierr); 18452593348eSBarry Smith return 0; 18462593348eSBarry Smith } 18472593348eSBarry Smith 18485615d1e5SSatish Balay #undef __FUNC__ 18495615d1e5SSatish Balay #define __FUNC__ "MatScale_SeqBAIJ" 18508f6be9afSLois Curfman McInnes int MatScale_SeqBAIJ(Scalar *alpha,Mat inA) 18512593348eSBarry Smith { 1852b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data; 18539df24120SSatish Balay int one = 1, totalnz = a->bs2*a->nz; 1854b6490206SBarry Smith BLscal_( &totalnz, alpha, a->a, &one ); 1855b6490206SBarry Smith PLogFlops(totalnz); 18562593348eSBarry Smith return 0; 18572593348eSBarry Smith } 18582593348eSBarry Smith 18595615d1e5SSatish Balay #undef __FUNC__ 18605615d1e5SSatish Balay #define __FUNC__ "MatGetValues_SeqBAIJ" 18618f6be9afSLois Curfman McInnes int MatGetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v) 18627e67e3f9SSatish Balay { 18637e67e3f9SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 18647e67e3f9SSatish Balay int *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j; 1865a7c10996SSatish Balay int *ai = a->i, *ailen = a->ilen; 18669df24120SSatish Balay int brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2; 18677e67e3f9SSatish Balay Scalar *ap, *aa = a->a, zero = 0.0; 18687e67e3f9SSatish Balay 18697e67e3f9SSatish Balay for ( k=0; k<m; k++ ) { /* loop over rows */ 18707e67e3f9SSatish Balay row = im[k]; brow = row/bs; 1871e3372554SBarry Smith if (row < 0) SETERRQ(1,0,"Negative row"); 1872e3372554SBarry Smith if (row >= a->m) SETERRQ(1,0,"Row too large"); 1873a7c10996SSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 18747e67e3f9SSatish Balay nrow = ailen[brow]; 18757e67e3f9SSatish Balay for ( l=0; l<n; l++ ) { /* loop over columns */ 1876e3372554SBarry Smith if (in[l] < 0) SETERRQ(1,0,"Negative column"); 1877e3372554SBarry Smith if (in[l] >= a->n) SETERRQ(1,0,"Column too large"); 1878a7c10996SSatish Balay col = in[l] ; 18797e67e3f9SSatish Balay bcol = col/bs; 18807e67e3f9SSatish Balay cidx = col%bs; 18817e67e3f9SSatish Balay ridx = row%bs; 18827e67e3f9SSatish Balay high = nrow; 18837e67e3f9SSatish Balay low = 0; /* assume unsorted */ 18847e67e3f9SSatish Balay while (high-low > 5) { 18857e67e3f9SSatish Balay t = (low+high)/2; 18867e67e3f9SSatish Balay if (rp[t] > bcol) high = t; 18877e67e3f9SSatish Balay else low = t; 18887e67e3f9SSatish Balay } 18897e67e3f9SSatish Balay for ( i=low; i<high; i++ ) { 18907e67e3f9SSatish Balay if (rp[i] > bcol) break; 18917e67e3f9SSatish Balay if (rp[i] == bcol) { 18927e67e3f9SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 18937e67e3f9SSatish Balay goto finished; 18947e67e3f9SSatish Balay } 18957e67e3f9SSatish Balay } 18967e67e3f9SSatish Balay *v++ = zero; 18977e67e3f9SSatish Balay finished:; 18987e67e3f9SSatish Balay } 18997e67e3f9SSatish Balay } 19007e67e3f9SSatish Balay return 0; 19017e67e3f9SSatish Balay } 19027e67e3f9SSatish Balay 19035615d1e5SSatish Balay #undef __FUNC__ 19045eea60f9SBarry Smith #define __FUNC__ "MatGetBlockSize_SeqBAIJ" /* ADIC Ignore */ 19058f6be9afSLois Curfman McInnes int MatGetBlockSize_SeqBAIJ(Mat mat, int *bs) 19065a838052SSatish Balay { 19075a838052SSatish Balay Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *) mat->data; 19085a838052SSatish Balay *bs = baij->bs; 19095a838052SSatish Balay return 0; 19105a838052SSatish Balay } 19115a838052SSatish Balay 1912d9b7c43dSSatish Balay /* idx should be of length atlease bs */ 19135615d1e5SSatish Balay #undef __FUNC__ 19145615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ_Check_Block" 1915d9b7c43dSSatish Balay static int MatZeroRows_SeqBAIJ_Check_Block(int *idx, int bs, PetscTruth *flg) 1916d9b7c43dSSatish Balay { 1917d9b7c43dSSatish Balay int i,row; 1918d9b7c43dSSatish Balay row = idx[0]; 1919d9b7c43dSSatish Balay if (row%bs!=0) { *flg = PETSC_FALSE; return 0; } 1920d9b7c43dSSatish Balay 1921d9b7c43dSSatish Balay for ( i=1; i<bs; i++ ) { 1922d9b7c43dSSatish Balay if (row+i != idx[i]) { *flg = PETSC_FALSE; return 0; } 1923d9b7c43dSSatish Balay } 1924d9b7c43dSSatish Balay *flg = PETSC_TRUE; 1925d9b7c43dSSatish Balay return 0; 1926d9b7c43dSSatish Balay } 1927d9b7c43dSSatish Balay 19285615d1e5SSatish Balay #undef __FUNC__ 19295615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ" 19308f6be9afSLois Curfman McInnes int MatZeroRows_SeqBAIJ(Mat A,IS is, Scalar *diag) 1931d9b7c43dSSatish Balay { 1932d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 1933d9b7c43dSSatish Balay IS is_local; 1934d9b7c43dSSatish Balay int ierr,i,j,count,m=baij->m,is_n,*is_idx,*rows,bs=baij->bs,bs2=baij->bs2; 1935d9b7c43dSSatish Balay PetscTruth flg; 1936d9b7c43dSSatish Balay Scalar zero = 0.0,*aa; 1937d9b7c43dSSatish Balay 1938d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 1939d9b7c43dSSatish Balay ierr = ISGetSize(is,&is_n);CHKERRQ(ierr); 1940d9b7c43dSSatish Balay ierr = ISGetIndices(is,&is_idx);CHKERRQ(ierr); 1941537820f0SBarry Smith ierr = ISCreateGeneral(A->comm,is_n,is_idx,&is_local); CHKERRQ(ierr); 1942d9b7c43dSSatish Balay ierr = ISSort(is_local); CHKERRQ(ierr); 1943d9b7c43dSSatish Balay ierr = ISGetIndices(is_local,&rows); CHKERRQ(ierr); 1944d9b7c43dSSatish Balay 1945d9b7c43dSSatish Balay i = 0; 1946d9b7c43dSSatish Balay while (i < is_n) { 1947e3372554SBarry Smith if (rows[i]<0 || rows[i]>m) SETERRQ(1,0,"row out of range"); 1948d9b7c43dSSatish Balay flg = PETSC_FALSE; 1949d9b7c43dSSatish Balay if (i+bs <= is_n) {ierr = MatZeroRows_SeqBAIJ_Check_Block(rows+i,bs,&flg); CHKERRQ(ierr); } 1950d9b7c43dSSatish Balay if (flg) { /* There exists a block of rows to be Zerowed */ 1951d9b7c43dSSatish Balay baij->ilen[rows[i]/bs] = 0; 1952d9b7c43dSSatish Balay i += bs; 1953d9b7c43dSSatish Balay } else { /* Zero out only the requested row */ 1954d9b7c43dSSatish Balay count = (baij->i[rows[i]/bs +1] - baij->i[rows[i]/bs])*bs; 1955d9b7c43dSSatish Balay aa = baij->a + baij->i[rows[i]/bs]*bs2 + (rows[i]%bs); 1956d9b7c43dSSatish Balay for ( j=0; j<count; j++ ) { 1957d9b7c43dSSatish Balay aa[0] = zero; 1958d9b7c43dSSatish Balay aa+=bs; 1959d9b7c43dSSatish Balay } 1960d9b7c43dSSatish Balay i++; 1961d9b7c43dSSatish Balay } 1962d9b7c43dSSatish Balay } 1963d9b7c43dSSatish Balay if (diag) { 1964d9b7c43dSSatish Balay for ( j=0; j<is_n; j++ ) { 1965d9b7c43dSSatish Balay ierr = (*A->ops.setvalues)(A,1,rows+j,1,rows+j,diag,INSERT_VALUES);CHKERRQ(ierr); 1966d9b7c43dSSatish Balay } 1967d9b7c43dSSatish Balay } 1968d9b7c43dSSatish Balay ierr = ISRestoreIndices(is,&is_idx); CHKERRQ(ierr); 1969d9b7c43dSSatish Balay ierr = ISRestoreIndices(is_local,&rows); CHKERRQ(ierr); 1970d9b7c43dSSatish Balay ierr = ISDestroy(is_local); CHKERRQ(ierr); 19719a8dea36SBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1972d9b7c43dSSatish Balay 1973d9b7c43dSSatish Balay return 0; 1974d9b7c43dSSatish Balay } 19751c351548SSatish Balay 19765615d1e5SSatish Balay #undef __FUNC__ 19775eea60f9SBarry Smith #define __FUNC__ "MatPrintHelp_SeqBAIJ" /* ADIC Ignore */ 1978ba4ca20aSSatish Balay int MatPrintHelp_SeqBAIJ(Mat A) 1979ba4ca20aSSatish Balay { 1980ba4ca20aSSatish Balay static int called = 0; 1981ba4ca20aSSatish Balay MPI_Comm comm = A->comm; 1982ba4ca20aSSatish Balay 1983ba4ca20aSSatish Balay if (called) return 0; else called = 1; 1984ba4ca20aSSatish Balay PetscPrintf(comm," Options for MATSEQBAIJ and MATMPIBAIJ matrix formats (the defaults):\n"); 1985ba4ca20aSSatish Balay PetscPrintf(comm," -mat_block_size <block_size>\n"); 1986ba4ca20aSSatish Balay return 0; 1987ba4ca20aSSatish Balay } 1988d9b7c43dSSatish Balay 19892593348eSBarry Smith /* -------------------------------------------------------------------*/ 1990cd0e1443SSatish Balay static struct _MatOps MatOps = {MatSetValues_SeqBAIJ, 19919867e207SSatish Balay MatGetRow_SeqBAIJ,MatRestoreRow_SeqBAIJ, 1992f44d3a6dSSatish Balay MatMult_SeqBAIJ_N,MatMultAdd_SeqBAIJ_N, 1993faf6580fSSatish Balay MatMultTrans_SeqBAIJ,MatMultTransAdd_SeqBAIJ, 19941a6a6d98SBarry Smith MatSolve_SeqBAIJ_N,0, 1995b6490206SBarry Smith 0,0, 1996de6a44a3SBarry Smith MatLUFactor_SeqBAIJ,0, 1997b6490206SBarry Smith 0, 1998f2501298SSatish Balay MatTranspose_SeqBAIJ, 199917e48fc4SSatish Balay MatGetInfo_SeqBAIJ,MatEqual_SeqBAIJ, 20009867e207SSatish Balay MatGetDiagonal_SeqBAIJ,MatDiagonalScale_SeqBAIJ,MatNorm_SeqBAIJ, 2001584200bdSSatish Balay 0,MatAssemblyEnd_SeqBAIJ, 2002b6490206SBarry Smith 0, 2003d9b7c43dSSatish Balay MatSetOption_SeqBAIJ,MatZeroEntries_SeqBAIJ,MatZeroRows_SeqBAIJ, 20047fc0212eSBarry Smith MatLUFactorSymbolic_SeqBAIJ,MatLUFactorNumeric_SeqBAIJ_N,0,0, 2005b6490206SBarry Smith MatGetSize_SeqBAIJ,MatGetSize_SeqBAIJ,MatGetOwnershipRange_SeqBAIJ, 2006de6a44a3SBarry Smith MatILUFactorSymbolic_SeqBAIJ,0, 2007d402145bSBarry Smith 0,0, 2008b6490206SBarry Smith MatConvertSameType_SeqBAIJ,0,0, 2009b6490206SBarry Smith MatILUFactor_SeqBAIJ,0,0, 2010af015674SSatish Balay MatGetSubMatrices_SeqBAIJ,MatIncreaseOverlap_SeqBAIJ, 20117e67e3f9SSatish Balay MatGetValues_SeqBAIJ,0, 2012ba4ca20aSSatish Balay MatPrintHelp_SeqBAIJ,MatScale_SeqBAIJ, 20133b2fbd54SBarry Smith 0,0,0,MatGetBlockSize_SeqBAIJ, 20143b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 201592c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 201692c4ed94SBarry Smith 0,0,0,0,0,0, 201792c4ed94SBarry Smith MatSetValuesBlocked_SeqBAIJ}; 20182593348eSBarry Smith 20195615d1e5SSatish Balay #undef __FUNC__ 20205615d1e5SSatish Balay #define __FUNC__ "MatCreateSeqBAIJ" 20212593348eSBarry Smith /*@C 202244cd7ae7SLois Curfman McInnes MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 202344cd7ae7SLois Curfman McInnes compressed row) format. For good matrix assembly performance the 202444cd7ae7SLois Curfman McInnes user should preallocate the matrix storage by setting the parameter nz 20252bd5e0b2SLois Curfman McInnes (or the array nzz). By setting these parameters accurately, performance 20262bd5e0b2SLois Curfman McInnes during matrix assembly can be increased by more than a factor of 50. 20272593348eSBarry Smith 20282593348eSBarry Smith Input Parameters: 20292593348eSBarry Smith . comm - MPI communicator, set to MPI_COMM_SELF 2030b6490206SBarry Smith . bs - size of block 20312593348eSBarry Smith . m - number of rows 20322593348eSBarry Smith . n - number of columns 2033b6490206SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 20342bd5e0b2SLois Curfman McInnes . nzz - array containing the number of block nonzeros in the various block rows 20352bd5e0b2SLois Curfman McInnes (possibly different for each block row) or PETSC_NULL 20362593348eSBarry Smith 20372593348eSBarry Smith Output Parameter: 20382593348eSBarry Smith . A - the matrix 20392593348eSBarry Smith 20400513a670SBarry Smith Options Database Keys: 20410513a670SBarry Smith $ -mat_no_unroll - uses code that does not unroll the loops in the 20420513a670SBarry Smith $ block calculations (much solver) 20430513a670SBarry Smith $ -mat_block_size - size of the blocks to use 20440513a670SBarry Smith 20452593348eSBarry Smith Notes: 204644cd7ae7SLois Curfman McInnes The block AIJ format is fully compatible with standard Fortran 77 20472593348eSBarry Smith storage. That is, the stored row and column indices can begin at 204844cd7ae7SLois Curfman McInnes either one (as in Fortran) or zero. See the users' manual for details. 20492593348eSBarry Smith 20502593348eSBarry Smith Specify the preallocated storage with either nz or nnz (not both). 20512593348eSBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 20522593348eSBarry Smith allocation. For additional details, see the users manual chapter on 20536da5968aSLois Curfman McInnes matrices. 20542593348eSBarry Smith 205544cd7ae7SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 20562593348eSBarry Smith @*/ 2057b6490206SBarry Smith int MatCreateSeqBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,int *nnz, Mat *A) 20582593348eSBarry Smith { 20592593348eSBarry Smith Mat B; 2060b6490206SBarry Smith Mat_SeqBAIJ *b; 20613b2fbd54SBarry Smith int i,len,ierr,flg,mbs=m/bs,nbs=n/bs,bs2=bs*bs,size; 20623b2fbd54SBarry Smith 20633b2fbd54SBarry Smith MPI_Comm_size(comm,&size); 2064e3372554SBarry Smith if (size > 1) SETERRQ(1,0,"Comm must be of size 1"); 2065b6490206SBarry Smith 20660513a670SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,&flg);CHKERRQ(ierr); 20670513a670SBarry Smith 2068f2501298SSatish Balay if (mbs*bs!=m || nbs*bs!=n) 2069e3372554SBarry Smith SETERRQ(1,0,"Number rows, cols must be divisible by blocksize"); 20702593348eSBarry Smith 20712593348eSBarry Smith *A = 0; 2072b6490206SBarry Smith PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATSEQBAIJ,comm); 20732593348eSBarry Smith PLogObjectCreate(B); 2074b6490206SBarry Smith B->data = (void *) (b = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(b); 207544cd7ae7SLois Curfman McInnes PetscMemzero(b,sizeof(Mat_SeqBAIJ)); 20762593348eSBarry Smith PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 20771a6a6d98SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_no_unroll",&flg); CHKERRQ(ierr); 20781a6a6d98SBarry Smith if (!flg) { 20797fc0212eSBarry Smith switch (bs) { 20807fc0212eSBarry Smith case 1: 20817fc0212eSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1; 20821a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_1; 208339b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_1; 2084f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_1; 20857fc0212eSBarry Smith break; 20864eeb42bcSBarry Smith case 2: 20874eeb42bcSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2; 20881a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_2; 208939b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_2; 2090f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_2; 20916d84be18SBarry Smith break; 2092f327dd97SBarry Smith case 3: 2093f327dd97SBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3; 20941a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_3; 209539b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_3; 2096f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_3; 20974eeb42bcSBarry Smith break; 20986d84be18SBarry Smith case 4: 20996d84be18SBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4; 21001a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_4; 210139b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_4; 2102f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_4; 21036d84be18SBarry Smith break; 21046d84be18SBarry Smith case 5: 21056d84be18SBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5; 21061a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_5; 210739b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_5; 2108f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_5; 21096d84be18SBarry Smith break; 211048e9ddb2SSatish Balay case 7: 211148e9ddb2SSatish Balay B->ops.mult = MatMult_SeqBAIJ_7; 211248e9ddb2SSatish Balay B->ops.solve = MatSolve_SeqBAIJ_7; 211348e9ddb2SSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_7; 211448e9ddb2SSatish Balay break; 21157fc0212eSBarry Smith } 21161a6a6d98SBarry Smith } 2117b6490206SBarry Smith B->destroy = MatDestroy_SeqBAIJ; 2118b6490206SBarry Smith B->view = MatView_SeqBAIJ; 21192593348eSBarry Smith B->factor = 0; 21202593348eSBarry Smith B->lupivotthreshold = 1.0; 212190f02eecSBarry Smith B->mapping = 0; 21222593348eSBarry Smith b->row = 0; 21232593348eSBarry Smith b->col = 0; 21242593348eSBarry Smith b->reallocs = 0; 21252593348eSBarry Smith 212644cd7ae7SLois Curfman McInnes b->m = m; B->m = m; B->M = m; 212744cd7ae7SLois Curfman McInnes b->n = n; B->n = n; B->N = n; 2128b6490206SBarry Smith b->mbs = mbs; 2129f2501298SSatish Balay b->nbs = nbs; 2130b6490206SBarry Smith b->imax = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(b->imax); 21312593348eSBarry Smith if (nnz == PETSC_NULL) { 2132119a934aSSatish Balay if (nz == PETSC_DEFAULT) nz = 5; 21332593348eSBarry Smith else if (nz <= 0) nz = 1; 2134b6490206SBarry Smith for ( i=0; i<mbs; i++ ) b->imax[i] = nz; 2135b6490206SBarry Smith nz = nz*mbs; 21362593348eSBarry Smith } 21372593348eSBarry Smith else { 21382593348eSBarry Smith nz = 0; 2139b6490206SBarry Smith for ( i=0; i<mbs; i++ ) {b->imax[i] = nnz[i]; nz += nnz[i];} 21402593348eSBarry Smith } 21412593348eSBarry Smith 21422593348eSBarry Smith /* allocate the matrix space */ 21437e67e3f9SSatish Balay len = nz*sizeof(int) + nz*bs2*sizeof(Scalar) + (b->m+1)*sizeof(int); 21442593348eSBarry Smith b->a = (Scalar *) PetscMalloc( len ); CHKPTRQ(b->a); 21457e67e3f9SSatish Balay PetscMemzero(b->a,nz*bs2*sizeof(Scalar)); 21467e67e3f9SSatish Balay b->j = (int *) (b->a + nz*bs2); 21472593348eSBarry Smith PetscMemzero(b->j,nz*sizeof(int)); 21482593348eSBarry Smith b->i = b->j + nz; 21492593348eSBarry Smith b->singlemalloc = 1; 21502593348eSBarry Smith 2151de6a44a3SBarry Smith b->i[0] = 0; 2152b6490206SBarry Smith for (i=1; i<mbs+1; i++) { 21532593348eSBarry Smith b->i[i] = b->i[i-1] + b->imax[i-1]; 21542593348eSBarry Smith } 21552593348eSBarry Smith 2156b6490206SBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 2157b6490206SBarry Smith b->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int)); 2158b6490206SBarry Smith PLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_SeqBAIJ)); 2159b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { b->ilen[i] = 0;} 21602593348eSBarry Smith 2161b6490206SBarry Smith b->bs = bs; 21629df24120SSatish Balay b->bs2 = bs2; 2163b6490206SBarry Smith b->mbs = mbs; 21642593348eSBarry Smith b->nz = 0; 216518e7b8e4SLois Curfman McInnes b->maxnz = nz*bs2; 21662593348eSBarry Smith b->sorted = 0; 21672593348eSBarry Smith b->roworiented = 1; 21682593348eSBarry Smith b->nonew = 0; 21692593348eSBarry Smith b->diag = 0; 21702593348eSBarry Smith b->solve_work = 0; 2171de6a44a3SBarry Smith b->mult_work = 0; 21722593348eSBarry Smith b->spptr = 0; 21734e220ebcSLois Curfman McInnes B->info.nz_unneeded = (double)b->maxnz; 21744e220ebcSLois Curfman McInnes 21752593348eSBarry Smith *A = B; 21762593348eSBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help", &flg); CHKERRQ(ierr); 21772593348eSBarry Smith if (flg) {ierr = MatPrintHelp(B); CHKERRQ(ierr); } 21782593348eSBarry Smith return 0; 21792593348eSBarry Smith } 21802593348eSBarry Smith 21815615d1e5SSatish Balay #undef __FUNC__ 21825615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_SeqBAIJ" 2183b6490206SBarry Smith int MatConvertSameType_SeqBAIJ(Mat A,Mat *B,int cpvalues) 21842593348eSBarry Smith { 21852593348eSBarry Smith Mat C; 2186b6490206SBarry Smith Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ *) A->data; 21879df24120SSatish Balay int i,len, mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 2188de6a44a3SBarry Smith 2189e3372554SBarry Smith if (a->i[mbs] != nz) SETERRQ(1,0,"Corrupt matrix"); 21902593348eSBarry Smith 21912593348eSBarry Smith *B = 0; 2192b6490206SBarry Smith PetscHeaderCreate(C,_Mat,MAT_COOKIE,MATSEQBAIJ,A->comm); 21932593348eSBarry Smith PLogObjectCreate(C); 2194b6490206SBarry Smith C->data = (void *) (c = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(c); 21952593348eSBarry Smith PetscMemcpy(&C->ops,&A->ops,sizeof(struct _MatOps)); 2196b6490206SBarry Smith C->destroy = MatDestroy_SeqBAIJ; 2197b6490206SBarry Smith C->view = MatView_SeqBAIJ; 21982593348eSBarry Smith C->factor = A->factor; 21992593348eSBarry Smith c->row = 0; 22002593348eSBarry Smith c->col = 0; 22012593348eSBarry Smith C->assembled = PETSC_TRUE; 22022593348eSBarry Smith 220344cd7ae7SLois Curfman McInnes c->m = C->m = a->m; 220444cd7ae7SLois Curfman McInnes c->n = C->n = a->n; 220544cd7ae7SLois Curfman McInnes C->M = a->m; 220644cd7ae7SLois Curfman McInnes C->N = a->n; 220744cd7ae7SLois Curfman McInnes 2208b6490206SBarry Smith c->bs = a->bs; 22099df24120SSatish Balay c->bs2 = a->bs2; 2210b6490206SBarry Smith c->mbs = a->mbs; 2211b6490206SBarry Smith c->nbs = a->nbs; 22122593348eSBarry Smith 2213b6490206SBarry Smith c->imax = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->imax); 2214b6490206SBarry Smith c->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->ilen); 2215b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 22162593348eSBarry Smith c->imax[i] = a->imax[i]; 22172593348eSBarry Smith c->ilen[i] = a->ilen[i]; 22182593348eSBarry Smith } 22192593348eSBarry Smith 22202593348eSBarry Smith /* allocate the matrix space */ 22212593348eSBarry Smith c->singlemalloc = 1; 22227e67e3f9SSatish Balay len = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(Scalar) + sizeof(int)); 22232593348eSBarry Smith c->a = (Scalar *) PetscMalloc( len ); CHKPTRQ(c->a); 22247e67e3f9SSatish Balay c->j = (int *) (c->a + nz*bs2); 2225de6a44a3SBarry Smith c->i = c->j + nz; 2226b6490206SBarry Smith PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int)); 2227b6490206SBarry Smith if (mbs > 0) { 2228de6a44a3SBarry Smith PetscMemcpy(c->j,a->j,nz*sizeof(int)); 22292593348eSBarry Smith if (cpvalues == COPY_VALUES) { 22307e67e3f9SSatish Balay PetscMemcpy(c->a,a->a,bs2*nz*sizeof(Scalar)); 22312593348eSBarry Smith } 22322593348eSBarry Smith } 22332593348eSBarry Smith 2234b6490206SBarry Smith PLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_SeqBAIJ)); 22352593348eSBarry Smith c->sorted = a->sorted; 22362593348eSBarry Smith c->roworiented = a->roworiented; 22372593348eSBarry Smith c->nonew = a->nonew; 22382593348eSBarry Smith 22392593348eSBarry Smith if (a->diag) { 2240b6490206SBarry Smith c->diag = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(c->diag); 2241b6490206SBarry Smith PLogObjectMemory(C,(mbs+1)*sizeof(int)); 2242b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 22432593348eSBarry Smith c->diag[i] = a->diag[i]; 22442593348eSBarry Smith } 22452593348eSBarry Smith } 22462593348eSBarry Smith else c->diag = 0; 22472593348eSBarry Smith c->nz = a->nz; 22482593348eSBarry Smith c->maxnz = a->maxnz; 22492593348eSBarry Smith c->solve_work = 0; 22502593348eSBarry Smith c->spptr = 0; /* Dangerous -I'm throwing away a->spptr */ 22517fc0212eSBarry Smith c->mult_work = 0; 22522593348eSBarry Smith *B = C; 22532593348eSBarry Smith return 0; 22542593348eSBarry Smith } 22552593348eSBarry Smith 22565615d1e5SSatish Balay #undef __FUNC__ 22575615d1e5SSatish Balay #define __FUNC__ "MatLoad_SeqBAIJ" 225819bcc07fSBarry Smith int MatLoad_SeqBAIJ(Viewer viewer,MatType type,Mat *A) 22592593348eSBarry Smith { 2260b6490206SBarry Smith Mat_SeqBAIJ *a; 22612593348eSBarry Smith Mat B; 2262de6a44a3SBarry Smith int i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1,flg; 2263b6490206SBarry Smith int *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 226435aab85fSBarry Smith int kmax,jcount,block,idx,point,nzcountb,extra_rows; 2265a7c10996SSatish Balay int *masked, nmask,tmp,bs2,ishift; 2266b6490206SBarry Smith Scalar *aa; 226719bcc07fSBarry Smith MPI_Comm comm = ((PetscObject) viewer)->comm; 22682593348eSBarry Smith 22691a6a6d98SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 2270de6a44a3SBarry Smith bs2 = bs*bs; 2271b6490206SBarry Smith 22722593348eSBarry Smith MPI_Comm_size(comm,&size); 2273e3372554SBarry Smith if (size > 1) SETERRQ(1,0,"view must have one processor"); 227490ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 227577c4ece6SBarry Smith ierr = PetscBinaryRead(fd,header,4,BINARY_INT); CHKERRQ(ierr); 2276e3372554SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not Mat object"); 22772593348eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 22782593348eSBarry Smith 2279e3372554SBarry Smith if (M != N) SETERRQ(1,0,"Can only do square matrices"); 228035aab85fSBarry Smith 228135aab85fSBarry Smith /* 228235aab85fSBarry Smith This code adds extra rows to make sure the number of rows is 228335aab85fSBarry Smith divisible by the blocksize 228435aab85fSBarry Smith */ 2285b6490206SBarry Smith mbs = M/bs; 228635aab85fSBarry Smith extra_rows = bs - M + bs*(mbs); 228735aab85fSBarry Smith if (extra_rows == bs) extra_rows = 0; 228835aab85fSBarry Smith else mbs++; 228935aab85fSBarry Smith if (extra_rows) { 2290537820f0SBarry Smith PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize\n"); 229135aab85fSBarry Smith } 2292b6490206SBarry Smith 22932593348eSBarry Smith /* read in row lengths */ 229435aab85fSBarry Smith rowlengths = (int*) PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 229577c4ece6SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 229635aab85fSBarry Smith for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 22972593348eSBarry Smith 2298b6490206SBarry Smith /* read in column indices */ 229935aab85fSBarry Smith jj = (int*) PetscMalloc( (nz+extra_rows)*sizeof(int) ); CHKPTRQ(jj); 230077c4ece6SBarry Smith ierr = PetscBinaryRead(fd,jj,nz,BINARY_INT); CHKERRQ(ierr); 230135aab85fSBarry Smith for ( i=0; i<extra_rows; i++ ) jj[nz+i] = M+i; 2302b6490206SBarry Smith 2303b6490206SBarry Smith /* loop over row lengths determining block row lengths */ 2304b6490206SBarry Smith browlengths = (int *) PetscMalloc(mbs*sizeof(int));CHKPTRQ(browlengths); 2305b6490206SBarry Smith PetscMemzero(browlengths,mbs*sizeof(int)); 230635aab85fSBarry Smith mask = (int *) PetscMalloc( 2*mbs*sizeof(int) ); CHKPTRQ(mask); 230735aab85fSBarry Smith PetscMemzero(mask,mbs*sizeof(int)); 230835aab85fSBarry Smith masked = mask + mbs; 2309b6490206SBarry Smith rowcount = 0; nzcount = 0; 2310b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 231135aab85fSBarry Smith nmask = 0; 2312b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 2313b6490206SBarry Smith kmax = rowlengths[rowcount]; 2314b6490206SBarry Smith for ( k=0; k<kmax; k++ ) { 231535aab85fSBarry Smith tmp = jj[nzcount++]/bs; 231635aab85fSBarry Smith if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 2317b6490206SBarry Smith } 2318b6490206SBarry Smith rowcount++; 2319b6490206SBarry Smith } 232035aab85fSBarry Smith browlengths[i] += nmask; 232135aab85fSBarry Smith /* zero out the mask elements we set */ 232235aab85fSBarry Smith for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0; 2323b6490206SBarry Smith } 2324b6490206SBarry Smith 23252593348eSBarry Smith /* create our matrix */ 232635aab85fSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,browlengths,A); 232735aab85fSBarry Smith CHKERRQ(ierr); 23282593348eSBarry Smith B = *A; 2329b6490206SBarry Smith a = (Mat_SeqBAIJ *) B->data; 23302593348eSBarry Smith 23312593348eSBarry Smith /* set matrix "i" values */ 2332de6a44a3SBarry Smith a->i[0] = 0; 2333b6490206SBarry Smith for ( i=1; i<= mbs; i++ ) { 2334b6490206SBarry Smith a->i[i] = a->i[i-1] + browlengths[i-1]; 2335b6490206SBarry Smith a->ilen[i-1] = browlengths[i-1]; 23362593348eSBarry Smith } 2337b6490206SBarry Smith a->nz = 0; 2338b6490206SBarry Smith for ( i=0; i<mbs; i++ ) a->nz += browlengths[i]; 23392593348eSBarry Smith 2340b6490206SBarry Smith /* read in nonzero values */ 234135aab85fSBarry Smith aa = (Scalar *) PetscMalloc((nz+extra_rows)*sizeof(Scalar));CHKPTRQ(aa); 234277c4ece6SBarry Smith ierr = PetscBinaryRead(fd,aa,nz,BINARY_SCALAR); CHKERRQ(ierr); 234335aab85fSBarry Smith for ( i=0; i<extra_rows; i++ ) aa[nz+i] = 1.0; 2344b6490206SBarry Smith 2345b6490206SBarry Smith /* set "a" and "j" values into matrix */ 2346b6490206SBarry Smith nzcount = 0; jcount = 0; 2347b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 2348b6490206SBarry Smith nzcountb = nzcount; 234935aab85fSBarry Smith nmask = 0; 2350b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 2351b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 2352b6490206SBarry Smith for ( k=0; k<kmax; k++ ) { 235335aab85fSBarry Smith tmp = jj[nzcount++]/bs; 235435aab85fSBarry Smith if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 2355b6490206SBarry Smith } 2356b6490206SBarry Smith rowcount++; 2357b6490206SBarry Smith } 2358de6a44a3SBarry Smith /* sort the masked values */ 235977c4ece6SBarry Smith PetscSortInt(nmask,masked); 2360de6a44a3SBarry Smith 2361b6490206SBarry Smith /* set "j" values into matrix */ 2362b6490206SBarry Smith maskcount = 1; 236335aab85fSBarry Smith for ( j=0; j<nmask; j++ ) { 236435aab85fSBarry Smith a->j[jcount++] = masked[j]; 2365de6a44a3SBarry Smith mask[masked[j]] = maskcount++; 2366b6490206SBarry Smith } 2367b6490206SBarry Smith /* set "a" values into matrix */ 2368de6a44a3SBarry Smith ishift = bs2*a->i[i]; 2369b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 2370b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 2371b6490206SBarry Smith for ( k=0; k<kmax; k++ ) { 2372de6a44a3SBarry Smith tmp = jj[nzcountb]/bs ; 2373de6a44a3SBarry Smith block = mask[tmp] - 1; 2374de6a44a3SBarry Smith point = jj[nzcountb] - bs*tmp; 2375de6a44a3SBarry Smith idx = ishift + bs2*block + j + bs*point; 2376b6490206SBarry Smith a->a[idx] = aa[nzcountb++]; 2377b6490206SBarry Smith } 2378b6490206SBarry Smith } 237935aab85fSBarry Smith /* zero out the mask elements we set */ 238035aab85fSBarry Smith for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0; 2381b6490206SBarry Smith } 2382e3372554SBarry Smith if (jcount != a->nz) SETERRQ(1,0,"Error bad binary matrix"); 2383b6490206SBarry Smith 2384b6490206SBarry Smith PetscFree(rowlengths); 2385b6490206SBarry Smith PetscFree(browlengths); 2386b6490206SBarry Smith PetscFree(aa); 2387b6490206SBarry Smith PetscFree(jj); 2388b6490206SBarry Smith PetscFree(mask); 2389b6490206SBarry Smith 2390b6490206SBarry Smith B->assembled = PETSC_TRUE; 2391de6a44a3SBarry Smith 2392de6a44a3SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_view_info",&flg); CHKERRQ(ierr); 2393de6a44a3SBarry Smith if (flg) { 239419bcc07fSBarry Smith Viewer tviewer; 239519bcc07fSBarry Smith ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr); 2396639f9d9dSBarry Smith ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO,0);CHKERRQ(ierr); 239719bcc07fSBarry Smith ierr = MatView(B,tviewer); CHKERRQ(ierr); 239819bcc07fSBarry Smith ierr = ViewerDestroy(tviewer); CHKERRQ(ierr); 2399de6a44a3SBarry Smith } 2400de6a44a3SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_view_info_detailed",&flg);CHKERRQ(ierr); 2401de6a44a3SBarry Smith if (flg) { 240219bcc07fSBarry Smith Viewer tviewer; 240319bcc07fSBarry Smith ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr); 2404639f9d9dSBarry Smith ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO_LONG,0);CHKERRQ(ierr); 240519bcc07fSBarry Smith ierr = MatView(B,tviewer); CHKERRQ(ierr); 240619bcc07fSBarry Smith ierr = ViewerDestroy(tviewer); CHKERRQ(ierr); 2407de6a44a3SBarry Smith } 2408de6a44a3SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_view",&flg); CHKERRQ(ierr); 2409de6a44a3SBarry Smith if (flg) { 241019bcc07fSBarry Smith Viewer tviewer; 241119bcc07fSBarry Smith ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr); 241219bcc07fSBarry Smith ierr = MatView(B,tviewer); CHKERRQ(ierr); 241319bcc07fSBarry Smith ierr = ViewerDestroy(tviewer); CHKERRQ(ierr); 2414de6a44a3SBarry Smith } 2415de6a44a3SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_view_matlab",&flg); CHKERRQ(ierr); 2416de6a44a3SBarry Smith if (flg) { 241719bcc07fSBarry Smith Viewer tviewer; 241819bcc07fSBarry Smith ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr); 2419639f9d9dSBarry Smith ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_MATLAB,"M");CHKERRQ(ierr); 242019bcc07fSBarry Smith ierr = MatView(B,tviewer); CHKERRQ(ierr); 242119bcc07fSBarry Smith ierr = ViewerDestroy(tviewer); CHKERRQ(ierr); 2422de6a44a3SBarry Smith } 2423de6a44a3SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_view_draw",&flg); CHKERRQ(ierr); 2424de6a44a3SBarry Smith if (flg) { 242519bcc07fSBarry Smith Viewer tviewer; 242619bcc07fSBarry Smith ierr = ViewerDrawOpenX(B->comm,0,0,0,0,300,300,&tviewer); CHKERRQ(ierr); 242719bcc07fSBarry Smith ierr = MatView(B,(Viewer)tviewer); CHKERRQ(ierr); 242819bcc07fSBarry Smith ierr = ViewerFlush(tviewer); CHKERRQ(ierr); 242919bcc07fSBarry Smith ierr = ViewerDestroy(tviewer); CHKERRQ(ierr); 2430de6a44a3SBarry Smith } 24312593348eSBarry Smith return 0; 24322593348eSBarry Smith } 24332593348eSBarry Smith 24342593348eSBarry Smith 24352593348eSBarry Smith 2436