xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 3a40ed3dce77c081171d005ae1a6ff4bb9d13b6f)
19c01be13SBarry Smith 
2a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
3*3a40ed3dSBarry Smith static char vcid[] = "$Id: baij.c,v 1.113 1997/10/01 22:39:40 bsmith Exp bsmith $";
42593348eSBarry Smith #endif
52593348eSBarry Smith 
62593348eSBarry Smith /*
7b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
82593348eSBarry Smith   matrix storage format.
92593348eSBarry Smith */
103369ce9aSBarry Smith 
113369ce9aSBarry Smith #include "pinclude/pviewer.h"
123369ce9aSBarry Smith #include "sys.h"
1370f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h"
141a6a6d98SBarry Smith #include "src/vec/vecimpl.h"
151a6a6d98SBarry Smith #include "src/inline/spops.h"
162593348eSBarry Smith #include "petsc.h"
173b547af2SSatish Balay 
182593348eSBarry Smith 
19de6a44a3SBarry Smith /*
20de6a44a3SBarry Smith      Adds diagonal pointers to sparse matrix structure.
21de6a44a3SBarry Smith */
22de6a44a3SBarry Smith 
235615d1e5SSatish Balay #undef __FUNC__
245615d1e5SSatish Balay #define __FUNC__ "MatMarkDiag_SeqBAIJ"
25de6a44a3SBarry Smith int MatMarkDiag_SeqBAIJ(Mat A)
26de6a44a3SBarry Smith {
27de6a44a3SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
287fc0212eSBarry Smith   int         i,j, *diag, m = a->mbs;
29de6a44a3SBarry Smith 
30*3a40ed3dSBarry Smith   PetscFunctionBegin;
31de6a44a3SBarry Smith   diag = (int *) PetscMalloc( (m+1)*sizeof(int)); CHKPTRQ(diag);
32de6a44a3SBarry Smith   PLogObjectMemory(A,(m+1)*sizeof(int));
337fc0212eSBarry Smith   for ( i=0; i<m; i++ ) {
34de6a44a3SBarry Smith     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
35de6a44a3SBarry Smith       if (a->j[j] == i) {
36de6a44a3SBarry Smith         diag[i] = j;
37de6a44a3SBarry Smith         break;
38de6a44a3SBarry Smith       }
39de6a44a3SBarry Smith     }
40de6a44a3SBarry Smith   }
41de6a44a3SBarry Smith   a->diag = diag;
42*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
43de6a44a3SBarry Smith }
442593348eSBarry Smith 
452593348eSBarry Smith 
463b2fbd54SBarry Smith extern int MatToSymmetricIJ_SeqAIJ(int,int*,int*,int,int,int**,int**);
473b2fbd54SBarry Smith 
485615d1e5SSatish Balay #undef __FUNC__
495615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_SeqBAIJ"
503b2fbd54SBarry Smith static int MatGetRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
513b2fbd54SBarry Smith                             PetscTruth *done)
523b2fbd54SBarry Smith {
533b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
543b2fbd54SBarry Smith   int         ierr, n = a->mbs,i;
553b2fbd54SBarry Smith 
56*3a40ed3dSBarry Smith   PetscFunctionBegin;
573b2fbd54SBarry Smith   *nn = n;
58*3a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
593b2fbd54SBarry Smith   if (symmetric) {
603b2fbd54SBarry Smith     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,oshift,ia,ja);CHKERRQ(ierr);
613b2fbd54SBarry Smith   } else if (oshift == 1) {
623b2fbd54SBarry Smith     /* temporarily add 1 to i and j indices */
633b2fbd54SBarry Smith     int nz = a->i[n] + 1;
643b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]++;
653b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]++;
663b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
673b2fbd54SBarry Smith   } else {
683b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
693b2fbd54SBarry Smith   }
703b2fbd54SBarry Smith 
71*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
723b2fbd54SBarry Smith }
733b2fbd54SBarry Smith 
745615d1e5SSatish Balay #undef __FUNC__
75d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRowIJ_SeqBAIJ"
763b2fbd54SBarry Smith static int MatRestoreRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
773b2fbd54SBarry Smith                                 PetscTruth *done)
783b2fbd54SBarry Smith {
793b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
803b2fbd54SBarry Smith   int         i,n = a->mbs;
813b2fbd54SBarry Smith 
82*3a40ed3dSBarry Smith   PetscFunctionBegin;
83*3a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
843b2fbd54SBarry Smith   if (symmetric) {
853b2fbd54SBarry Smith     PetscFree(*ia);
863b2fbd54SBarry Smith     PetscFree(*ja);
87af5da2bfSBarry Smith   } else if (oshift == 1) {
883b2fbd54SBarry Smith     int nz = a->i[n];
893b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]--;
903b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]--;
913b2fbd54SBarry Smith   }
92*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
933b2fbd54SBarry Smith }
943b2fbd54SBarry Smith 
953b2fbd54SBarry Smith 
965615d1e5SSatish Balay #undef __FUNC__
97d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Binary"
98b6490206SBarry Smith static int MatView_SeqBAIJ_Binary(Mat A,Viewer viewer)
992593348eSBarry Smith {
100b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
1019df24120SSatish Balay   int         i, fd, *col_lens, ierr, bs = a->bs,count,*jj,j,k,l,bs2=a->bs2;
102b6490206SBarry Smith   Scalar      *aa;
1032593348eSBarry Smith 
104*3a40ed3dSBarry Smith   PetscFunctionBegin;
10590ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
1062593348eSBarry Smith   col_lens = (int *) PetscMalloc((4+a->m)*sizeof(int));CHKPTRQ(col_lens);
1072593348eSBarry Smith   col_lens[0] = MAT_COOKIE;
1083b2fbd54SBarry Smith 
1092593348eSBarry Smith   col_lens[1] = a->m;
1102593348eSBarry Smith   col_lens[2] = a->n;
1117e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
1122593348eSBarry Smith 
1132593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
114b6490206SBarry Smith   count = 0;
115b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
116b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
117b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
118b6490206SBarry Smith     }
1192593348eSBarry Smith   }
1200752156aSBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+a->m,PETSC_INT,1); CHKERRQ(ierr);
1212593348eSBarry Smith   PetscFree(col_lens);
1222593348eSBarry Smith 
1232593348eSBarry Smith   /* store column indices (zero start index) */
12466963ce1SSatish Balay   jj = (int *) PetscMalloc( (a->nz+1)*bs2*sizeof(int) ); CHKPTRQ(jj);
125b6490206SBarry Smith   count = 0;
126b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
127b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
128b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
129b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
130b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
1312593348eSBarry Smith         }
1322593348eSBarry Smith       }
133b6490206SBarry Smith     }
134b6490206SBarry Smith   }
1350752156aSBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,0); CHKERRQ(ierr);
136b6490206SBarry Smith   PetscFree(jj);
1372593348eSBarry Smith 
1382593348eSBarry Smith   /* store nonzero values */
13966963ce1SSatish Balay   aa = (Scalar *) PetscMalloc((a->nz+1)*bs2*sizeof(Scalar)); CHKPTRQ(aa);
140b6490206SBarry Smith   count = 0;
141b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
142b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
143b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
144b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
1457e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
146b6490206SBarry Smith         }
147b6490206SBarry Smith       }
148b6490206SBarry Smith     }
149b6490206SBarry Smith   }
1500752156aSBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,0); CHKERRQ(ierr);
151b6490206SBarry Smith   PetscFree(aa);
152*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1532593348eSBarry Smith }
1542593348eSBarry Smith 
1555615d1e5SSatish Balay #undef __FUNC__
156d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ_ASCII"
157b6490206SBarry Smith static int MatView_SeqBAIJ_ASCII(Mat A,Viewer viewer)
1582593348eSBarry Smith {
159b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
1609df24120SSatish Balay   int         ierr, i,j,format,bs = a->bs,k,l,bs2=a->bs2;
1612593348eSBarry Smith   FILE        *fd;
1622593348eSBarry Smith   char        *outputname;
1632593348eSBarry Smith 
164*3a40ed3dSBarry Smith   PetscFunctionBegin;
16590ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
1662593348eSBarry Smith   ierr = ViewerFileGetOutputname_Private(viewer,&outputname);CHKERRQ(ierr);
16790ace30eSBarry Smith   ierr = ViewerGetFormat(viewer,&format);
168639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO || format == VIEWER_FORMAT_ASCII_INFO_LONG) {
1697ddc982cSLois Curfman McInnes     fprintf(fd,"  block size is %d\n",bs);
1702593348eSBarry Smith   }
171639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_MATLAB) {
172e3372554SBarry Smith     SETERRQ(1,0,"Matlab format not supported");
1732593348eSBarry Smith   }
174639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_COMMON) {
17544cd7ae7SLois Curfman McInnes     for ( i=0; i<a->mbs; i++ ) {
17644cd7ae7SLois Curfman McInnes       for ( j=0; j<bs; j++ ) {
17744cd7ae7SLois Curfman McInnes         fprintf(fd,"row %d:",i*bs+j);
17844cd7ae7SLois Curfman McInnes         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
17944cd7ae7SLois Curfman McInnes           for ( l=0; l<bs; l++ ) {
180*3a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
181766eeae4SLois Curfman McInnes           if (imag(a->a[bs2*k + l*bs + j]) > 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0)
18244cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
18344cd7ae7SLois Curfman McInnes               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
184766eeae4SLois Curfman McInnes           else if (imag(a->a[bs2*k + l*bs + j]) < 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0)
185766eeae4SLois Curfman McInnes             fprintf(fd," %d %g - %g i",bs*a->j[k]+l,
186766eeae4SLois Curfman McInnes               real(a->a[bs2*k + l*bs + j]),-imag(a->a[bs2*k + l*bs + j]));
18744cd7ae7SLois Curfman McInnes           else if (real(a->a[bs2*k + l*bs + j]) != 0.0)
18844cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
18944cd7ae7SLois Curfman McInnes #else
19044cd7ae7SLois Curfman McInnes           if (a->a[bs2*k + l*bs + j] != 0.0)
19144cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
19244cd7ae7SLois Curfman McInnes #endif
19344cd7ae7SLois Curfman McInnes           }
19444cd7ae7SLois Curfman McInnes         }
19544cd7ae7SLois Curfman McInnes         fprintf(fd,"\n");
19644cd7ae7SLois Curfman McInnes       }
19744cd7ae7SLois Curfman McInnes     }
19844cd7ae7SLois Curfman McInnes   }
1992593348eSBarry Smith   else {
200b6490206SBarry Smith     for ( i=0; i<a->mbs; i++ ) {
201b6490206SBarry Smith       for ( j=0; j<bs; j++ ) {
202b6490206SBarry Smith         fprintf(fd,"row %d:",i*bs+j);
203b6490206SBarry Smith         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
204b6490206SBarry Smith           for ( l=0; l<bs; l++ ) {
205*3a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
206766eeae4SLois Curfman McInnes           if (imag(a->a[bs2*k + l*bs + j]) > 0.0) {
20788685aaeSLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
2087e67e3f9SSatish Balay               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
20988685aaeSLois Curfman McInnes           }
210766eeae4SLois Curfman McInnes           else if (imag(a->a[bs2*k + l*bs + j]) < 0.0) {
211766eeae4SLois Curfman McInnes             fprintf(fd," %d %g - %g i",bs*a->j[k]+l,
212766eeae4SLois Curfman McInnes               real(a->a[bs2*k + l*bs + j]),-imag(a->a[bs2*k + l*bs + j]));
213766eeae4SLois Curfman McInnes           }
21488685aaeSLois Curfman McInnes           else {
2157e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
21688685aaeSLois Curfman McInnes           }
21788685aaeSLois Curfman McInnes #else
2187e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
21988685aaeSLois Curfman McInnes #endif
2202593348eSBarry Smith           }
2212593348eSBarry Smith         }
2222593348eSBarry Smith         fprintf(fd,"\n");
2232593348eSBarry Smith       }
2242593348eSBarry Smith     }
225b6490206SBarry Smith   }
2262593348eSBarry Smith   fflush(fd);
227*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
2282593348eSBarry Smith }
2292593348eSBarry Smith 
2305615d1e5SSatish Balay #undef __FUNC__
231d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Draw"
2323270192aSSatish Balay static int MatView_SeqBAIJ_Draw(Mat A,Viewer viewer)
2333270192aSSatish Balay {
2343270192aSSatish Balay   Mat_SeqBAIJ  *a=(Mat_SeqBAIJ *) A->data;
2353270192aSSatish Balay   int          row,ierr,i,j,k,l,mbs=a->mbs,pause,color,bs=a->bs,bs2=a->bs2;
2363270192aSSatish Balay   double       xl,yl,xr,yr,w,h,xc,yc,scale = 1.0,x_l,x_r,y_l,y_r;
2373270192aSSatish Balay   Scalar       *aa;
2383270192aSSatish Balay   Draw         draw;
2393270192aSSatish Balay   DrawButton   button;
2403270192aSSatish Balay   PetscTruth   isnull;
2413270192aSSatish Balay 
242*3a40ed3dSBarry Smith   PetscFunctionBegin;
243*3a40ed3dSBarry Smith   ierr = ViewerDrawGetDraw(viewer,&draw);CHKERRQ(ierr);
244*3a40ed3dSBarry Smith   ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
2453270192aSSatish Balay 
2463270192aSSatish Balay   xr  = a->n; yr = a->m; h = yr/10.0; w = xr/10.0;
2473270192aSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
2483270192aSSatish Balay   ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
2493270192aSSatish Balay   /* loop over matrix elements drawing boxes */
2503270192aSSatish Balay   color = DRAW_BLUE;
2513270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2523270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2533270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2543270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2553270192aSSatish Balay       aa = a->a + j*bs2;
2563270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2573270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2583270192aSSatish Balay           if (PetscReal(*aa++) >=  0.) continue;
259b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2603270192aSSatish Balay         }
2613270192aSSatish Balay       }
2623270192aSSatish Balay     }
2633270192aSSatish Balay   }
2643270192aSSatish Balay   color = DRAW_CYAN;
2653270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2663270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2673270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2683270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2693270192aSSatish Balay       aa = a->a + j*bs2;
2703270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2713270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2723270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
273b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2743270192aSSatish Balay         }
2753270192aSSatish Balay       }
2763270192aSSatish Balay     }
2773270192aSSatish Balay   }
2783270192aSSatish Balay 
2793270192aSSatish Balay   color = DRAW_RED;
2803270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2813270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2823270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2833270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2843270192aSSatish Balay       aa = a->a + j*bs2;
2853270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2863270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2873270192aSSatish Balay           if (PetscReal(*aa++) <= 0.) continue;
288b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2893270192aSSatish Balay         }
2903270192aSSatish Balay       }
2913270192aSSatish Balay     }
2923270192aSSatish Balay   }
2933270192aSSatish Balay 
2943270192aSSatish Balay   DrawFlush(draw);
2953270192aSSatish Balay   DrawGetPause(draw,&pause);
296*3a40ed3dSBarry Smith   if (pause >= 0) { PetscSleep(pause); PetscFunctionReturn(0);}
2973270192aSSatish Balay 
2983270192aSSatish Balay   /* allow the matrix to zoom or shrink */
2993270192aSSatish Balay   ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
3003270192aSSatish Balay   while (button != BUTTON_RIGHT) {
3013270192aSSatish Balay     DrawClear(draw);
3023270192aSSatish Balay     if (button == BUTTON_LEFT) scale = .5;
3033270192aSSatish Balay     else if (button == BUTTON_CENTER) scale = 2.;
3043270192aSSatish Balay     xl = scale*(xl + w - xc) + xc - w*scale;
3053270192aSSatish Balay     xr = scale*(xr - w - xc) + xc + w*scale;
3063270192aSSatish Balay     yl = scale*(yl + h - yc) + yc - h*scale;
3073270192aSSatish Balay     yr = scale*(yr - h - yc) + yc + h*scale;
3083270192aSSatish Balay     w *= scale; h *= scale;
3093270192aSSatish Balay     ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
3103270192aSSatish Balay     color = DRAW_BLUE;
3113270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3123270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3133270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3143270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3153270192aSSatish Balay         aa = a->a + j*bs2;
3163270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3173270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3183270192aSSatish Balay             if (PetscReal(*aa++) >=  0.) continue;
319b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3203270192aSSatish Balay           }
3213270192aSSatish Balay         }
3223270192aSSatish Balay       }
3233270192aSSatish Balay     }
3243270192aSSatish Balay     color = DRAW_CYAN;
3253270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3263270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3273270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3283270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3293270192aSSatish Balay         aa = a->a + j*bs2;
3303270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3313270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3323270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
333b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3343270192aSSatish Balay           }
3353270192aSSatish Balay         }
3363270192aSSatish Balay       }
3373270192aSSatish Balay     }
3383270192aSSatish Balay 
3393270192aSSatish Balay     color = DRAW_RED;
3403270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3413270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3423270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3433270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3443270192aSSatish Balay         aa = a->a + j*bs2;
3453270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3463270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3473270192aSSatish Balay             if (PetscReal(*aa++) <= 0.) continue;
348b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3493270192aSSatish Balay           }
3503270192aSSatish Balay         }
3513270192aSSatish Balay       }
3523270192aSSatish Balay     }
3533270192aSSatish Balay     ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
3543270192aSSatish Balay   }
355*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
3563270192aSSatish Balay }
3573270192aSSatish Balay 
3585615d1e5SSatish Balay #undef __FUNC__
359d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ"
3608f6be9afSLois Curfman McInnes int MatView_SeqBAIJ(PetscObject obj,Viewer viewer)
3612593348eSBarry Smith {
3622593348eSBarry Smith   Mat         A = (Mat) obj;
36319bcc07fSBarry Smith   ViewerType  vtype;
36419bcc07fSBarry Smith   int         ierr;
3652593348eSBarry Smith 
366*3a40ed3dSBarry Smith   PetscFunctionBegin;
36719bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
36819bcc07fSBarry Smith   if (vtype == MATLAB_VIEWER) {
369e3372554SBarry Smith     SETERRQ(1,0,"Matlab viewer not supported");
370*3a40ed3dSBarry Smith   } else if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER){
371*3a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
372*3a40ed3dSBarry Smith   } else if (vtype == BINARY_FILE_VIEWER) {
373*3a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
374*3a40ed3dSBarry Smith   } else if (vtype == DRAW_VIEWER) {
375*3a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
3762593348eSBarry Smith   }
377*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
3782593348eSBarry Smith }
379b6490206SBarry Smith 
380119a934aSSatish Balay #define CHUNKSIZE  10
381cd0e1443SSatish Balay 
3825615d1e5SSatish Balay #undef __FUNC__
3835615d1e5SSatish Balay #define __FUNC__ "MatSetValues_SeqBAIJ"
384639f9d9dSBarry Smith int MatSetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
385cd0e1443SSatish Balay {
386cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
387cd0e1443SSatish Balay   int         *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
388cd0e1443SSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
389a7c10996SSatish Balay   int         *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol;
3909df24120SSatish Balay   int          ridx,cidx,bs2=a->bs2;
391cd0e1443SSatish Balay   Scalar      *ap,value,*aa=a->a,*bap;
392cd0e1443SSatish Balay 
393*3a40ed3dSBarry Smith   PetscFunctionBegin;
394cd0e1443SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over added rows */
395cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
396*3a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
397e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
398e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
3993b2fbd54SBarry Smith #endif
4002c3acbe9SBarry Smith     rp   = aj + ai[brow];
4012c3acbe9SBarry Smith     ap   = aa + bs2*ai[brow];
4022c3acbe9SBarry Smith     rmax = imax[brow];
4032c3acbe9SBarry Smith     nrow = ailen[brow];
404cd0e1443SSatish Balay     low  = 0;
405cd0e1443SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over added columns */
406*3a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
407e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
408e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
4093b2fbd54SBarry Smith #endif
410a7c10996SSatish Balay       col = in[l]; bcol = col/bs;
411cd0e1443SSatish Balay       ridx = row % bs; cidx = col % bs;
412cd0e1443SSatish Balay       if (roworiented) {
413cd0e1443SSatish Balay         value = *v++;
414*3a40ed3dSBarry Smith       } else {
415cd0e1443SSatish Balay         value = v[k + l*m];
416cd0e1443SSatish Balay       }
417cd0e1443SSatish Balay       if (!sorted) low = 0; high = nrow;
4182c3acbe9SBarry Smith       while (high-low > 7) {
419cd0e1443SSatish Balay         t = (low+high)/2;
420cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
421cd0e1443SSatish Balay         else              low  = t;
422cd0e1443SSatish Balay       }
423cd0e1443SSatish Balay       for ( i=low; i<high; i++ ) {
424cd0e1443SSatish Balay         if (rp[i] > bcol) break;
425cd0e1443SSatish Balay         if (rp[i] == bcol) {
4267e67e3f9SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
427cd0e1443SSatish Balay           if (is == ADD_VALUES) *bap += value;
428cd0e1443SSatish Balay           else                  *bap  = value;
429f1241b54SBarry Smith           goto noinsert1;
430cd0e1443SSatish Balay         }
431cd0e1443SSatish Balay       }
432c2653b3dSLois Curfman McInnes       if (nonew == 1) goto noinsert1;
43311ebbc71SLois Curfman McInnes       else if (nonew == -1) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
434cd0e1443SSatish Balay       if (nrow >= rmax) {
435cd0e1443SSatish Balay         /* there is no extra room in row, therefore enlarge */
436cd0e1443SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
437cd0e1443SSatish Balay         Scalar *new_a;
438cd0e1443SSatish Balay 
43911ebbc71SLois Curfman McInnes         if (nonew == -2) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
44096854ed6SLois Curfman McInnes 
44196854ed6SLois Curfman McInnes         /* Malloc new storage space */
4427e67e3f9SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
443cd0e1443SSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
4447e67e3f9SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz);
445cd0e1443SSatish Balay         new_i   = new_j + new_nz;
446cd0e1443SSatish Balay 
447cd0e1443SSatish Balay         /* copy over old data into new slots */
448cd0e1443SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];}
4497e67e3f9SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
450a7c10996SSatish Balay         PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));
451a7c10996SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow);
452a7c10996SSatish Balay         PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,
453cd0e1443SSatish Balay                                                            len*sizeof(int));
454a7c10996SSatish Balay         PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));
455a7c10996SSatish Balay         PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
456a7c10996SSatish Balay         PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),
457a7c10996SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));
458cd0e1443SSatish Balay         /* free up old matrix storage */
459cd0e1443SSatish Balay         PetscFree(a->a);
460cd0e1443SSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
461cd0e1443SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
462cd0e1443SSatish Balay         a->singlemalloc = 1;
463cd0e1443SSatish Balay 
464a7c10996SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
465cd0e1443SSatish Balay         rmax = imax[brow] = imax[brow] + CHUNKSIZE;
4667e67e3f9SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
46718e7b8e4SLois Curfman McInnes         a->maxnz += bs2*CHUNKSIZE;
468cd0e1443SSatish Balay         a->reallocs++;
469119a934aSSatish Balay         a->nz++;
470cd0e1443SSatish Balay       }
4717e67e3f9SSatish Balay       N = nrow++ - 1;
472cd0e1443SSatish Balay       /* shift up all the later entries in this row */
473cd0e1443SSatish Balay       for ( ii=N; ii>=i; ii-- ) {
474cd0e1443SSatish Balay         rp[ii+1] = rp[ii];
4757e67e3f9SSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
476cd0e1443SSatish Balay       }
4777e67e3f9SSatish Balay       if (N>=i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
478cd0e1443SSatish Balay       rp[i]                      = bcol;
4797e67e3f9SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
480f1241b54SBarry Smith       noinsert1:;
481cd0e1443SSatish Balay       low = i;
482cd0e1443SSatish Balay     }
483cd0e1443SSatish Balay     ailen[brow] = nrow;
484cd0e1443SSatish Balay   }
485*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
486cd0e1443SSatish Balay }
487cd0e1443SSatish Balay 
4885615d1e5SSatish Balay #undef __FUNC__
48905a5f48eSSatish Balay #define __FUNC__ "MatSetValuesBlocked_SeqBAIJ"
49092c4ed94SBarry Smith int MatSetValuesBlocked_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
49192c4ed94SBarry Smith {
49292c4ed94SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
4938a84c255SSatish Balay   int         *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
494dd9472c6SBarry Smith   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen, roworiented=a->roworiented;
495dd9472c6SBarry Smith   int         *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=a->bs,stepval;
4960e324ae4SSatish Balay   Scalar      *ap,*value=v,*aa=a->a,*bap;
49792c4ed94SBarry Smith 
498*3a40ed3dSBarry Smith   PetscFunctionBegin;
4990e324ae4SSatish Balay   if (roworiented) {
5000e324ae4SSatish Balay     stepval = (n-1)*bs;
5010e324ae4SSatish Balay   } else {
5020e324ae4SSatish Balay     stepval = (m-1)*bs;
5030e324ae4SSatish Balay   }
50492c4ed94SBarry Smith   for ( k=0; k<m; k++ ) { /* loop over added rows */
50592c4ed94SBarry Smith     row  = im[k];
506*3a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
50792c4ed94SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
5088a84c255SSatish Balay     if (row >= a->mbs) SETERRQ(1,0,"Row too large");
50992c4ed94SBarry Smith #endif
51092c4ed94SBarry Smith     rp   = aj + ai[row];
51192c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
51292c4ed94SBarry Smith     rmax = imax[row];
51392c4ed94SBarry Smith     nrow = ailen[row];
51492c4ed94SBarry Smith     low  = 0;
51592c4ed94SBarry Smith     for ( l=0; l<n; l++ ) { /* loop over added columns */
516*3a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
51792c4ed94SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
5188a84c255SSatish Balay       if (in[l] >= a->nbs) SETERRQ(1,0,"Column too large");
51992c4ed94SBarry Smith #endif
52092c4ed94SBarry Smith       col = in[l];
52192c4ed94SBarry Smith       if (roworiented) {
5220e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
5230e324ae4SSatish Balay       } else {
5240e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
52592c4ed94SBarry Smith       }
52692c4ed94SBarry Smith       if (!sorted) low = 0; high = nrow;
52792c4ed94SBarry Smith       while (high-low > 7) {
52892c4ed94SBarry Smith         t = (low+high)/2;
52992c4ed94SBarry Smith         if (rp[t] > col) high = t;
53092c4ed94SBarry Smith         else             low  = t;
53192c4ed94SBarry Smith       }
53292c4ed94SBarry Smith       for ( i=low; i<high; i++ ) {
53392c4ed94SBarry Smith         if (rp[i] > col) break;
53492c4ed94SBarry Smith         if (rp[i] == col) {
5358a84c255SSatish Balay           bap  = ap +  bs2*i;
5360e324ae4SSatish Balay           if (roworiented) {
5378a84c255SSatish Balay             if (is == ADD_VALUES) {
538dd9472c6SBarry Smith               for ( ii=0; ii<bs; ii++,value+=stepval ) {
539dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs ) {
5408a84c255SSatish Balay                   bap[jj] += *value++;
541dd9472c6SBarry Smith                 }
542dd9472c6SBarry Smith               }
5430e324ae4SSatish Balay             } else {
544dd9472c6SBarry Smith               for ( ii=0; ii<bs; ii++,value+=stepval ) {
545dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs ) {
5460e324ae4SSatish Balay                   bap[jj] = *value++;
5478a84c255SSatish Balay                 }
548dd9472c6SBarry Smith               }
549dd9472c6SBarry Smith             }
5500e324ae4SSatish Balay           } else {
5510e324ae4SSatish Balay             if (is == ADD_VALUES) {
552dd9472c6SBarry Smith               for ( ii=0; ii<bs; ii++,value+=stepval ) {
553dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++ ) {
5540e324ae4SSatish Balay                   *bap++ += *value++;
555dd9472c6SBarry Smith                 }
556dd9472c6SBarry Smith               }
5570e324ae4SSatish Balay             } else {
558dd9472c6SBarry Smith               for ( ii=0; ii<bs; ii++,value+=stepval ) {
559dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++ ) {
5600e324ae4SSatish Balay                   *bap++  = *value++;
5610e324ae4SSatish Balay                 }
5628a84c255SSatish Balay               }
563dd9472c6SBarry Smith             }
564dd9472c6SBarry Smith           }
565f1241b54SBarry Smith           goto noinsert2;
56692c4ed94SBarry Smith         }
56792c4ed94SBarry Smith       }
56889280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
56911ebbc71SLois Curfman McInnes       else if (nonew == -1) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
57092c4ed94SBarry Smith       if (nrow >= rmax) {
57192c4ed94SBarry Smith         /* there is no extra room in row, therefore enlarge */
57292c4ed94SBarry Smith         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
57392c4ed94SBarry Smith         Scalar *new_a;
57492c4ed94SBarry Smith 
57511ebbc71SLois Curfman McInnes         if (nonew == -2) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
57689280ab3SLois Curfman McInnes 
57792c4ed94SBarry Smith         /* malloc new storage space */
57892c4ed94SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
57992c4ed94SBarry Smith         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
58092c4ed94SBarry Smith         new_j   = (int *) (new_a + bs2*new_nz);
58192c4ed94SBarry Smith         new_i   = new_j + new_nz;
58292c4ed94SBarry Smith 
58392c4ed94SBarry Smith         /* copy over old data into new slots */
58492c4ed94SBarry Smith         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];}
58592c4ed94SBarry Smith         for ( ii=row+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
58692c4ed94SBarry Smith         PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int));
58792c4ed94SBarry Smith         len = (new_nz - CHUNKSIZE - ai[row] - nrow);
588dd9472c6SBarry Smith         PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,len*sizeof(int));
58992c4ed94SBarry Smith         PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(Scalar));
59092c4ed94SBarry Smith         PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
591dd9472c6SBarry Smith         PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),aa+bs2*(ai[row]+nrow),bs2*len*sizeof(Scalar));
59292c4ed94SBarry Smith         /* free up old matrix storage */
59392c4ed94SBarry Smith         PetscFree(a->a);
59492c4ed94SBarry Smith         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
59592c4ed94SBarry Smith         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
59692c4ed94SBarry Smith         a->singlemalloc = 1;
59792c4ed94SBarry Smith 
59892c4ed94SBarry Smith         rp   = aj + ai[row]; ap = aa + bs2*ai[row];
59992c4ed94SBarry Smith         rmax = imax[row] = imax[row] + CHUNKSIZE;
60092c4ed94SBarry Smith         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
60192c4ed94SBarry Smith         a->maxnz += bs2*CHUNKSIZE;
60292c4ed94SBarry Smith         a->reallocs++;
60392c4ed94SBarry Smith         a->nz++;
60492c4ed94SBarry Smith       }
60592c4ed94SBarry Smith       N = nrow++ - 1;
60692c4ed94SBarry Smith       /* shift up all the later entries in this row */
60792c4ed94SBarry Smith       for ( ii=N; ii>=i; ii-- ) {
60892c4ed94SBarry Smith         rp[ii+1] = rp[ii];
60992c4ed94SBarry Smith         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
61092c4ed94SBarry Smith       }
61192c4ed94SBarry Smith       if (N >= i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
61292c4ed94SBarry Smith       rp[i] = col;
6138a84c255SSatish Balay       bap   = ap +  bs2*i;
6140e324ae4SSatish Balay       if (roworiented) {
615dd9472c6SBarry Smith         for ( ii=0; ii<bs; ii++,value+=stepval) {
616dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs ) {
6170e324ae4SSatish Balay             bap[jj] = *value++;
618dd9472c6SBarry Smith           }
619dd9472c6SBarry Smith         }
6200e324ae4SSatish Balay       } else {
621dd9472c6SBarry Smith         for ( ii=0; ii<bs; ii++,value+=stepval ) {
622dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++ ) {
6230e324ae4SSatish Balay             *bap++  = *value++;
6240e324ae4SSatish Balay           }
625dd9472c6SBarry Smith         }
626dd9472c6SBarry Smith       }
627f1241b54SBarry Smith       noinsert2:;
62892c4ed94SBarry Smith       low = i;
62992c4ed94SBarry Smith     }
63092c4ed94SBarry Smith     ailen[row] = nrow;
63192c4ed94SBarry Smith   }
632*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
63392c4ed94SBarry Smith }
63492c4ed94SBarry Smith 
63592c4ed94SBarry Smith #undef __FUNC__
636d4bb536fSBarry Smith #define __FUNC__ "MatGetSize_SeqBAIJ"
6378f6be9afSLois Curfman McInnes int MatGetSize_SeqBAIJ(Mat A,int *m,int *n)
6380b824a48SSatish Balay {
6390b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
640*3a40ed3dSBarry Smith 
641*3a40ed3dSBarry Smith   PetscFunctionBegin;
6420752156aSBarry Smith   if (m) *m = a->m;
6430752156aSBarry Smith   if (n) *n = a->n;
644*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
6450b824a48SSatish Balay }
6460b824a48SSatish Balay 
6475615d1e5SSatish Balay #undef __FUNC__
648d4bb536fSBarry Smith #define __FUNC__ "MatGetOwnershipRange_SeqBAIJ"
6498f6be9afSLois Curfman McInnes int MatGetOwnershipRange_SeqBAIJ(Mat A,int *m,int *n)
6500b824a48SSatish Balay {
6510b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
652*3a40ed3dSBarry Smith 
653*3a40ed3dSBarry Smith   PetscFunctionBegin;
6540b824a48SSatish Balay   *m = 0; *n = a->m;
655*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
6560b824a48SSatish Balay }
6570b824a48SSatish Balay 
6585615d1e5SSatish Balay #undef __FUNC__
6595615d1e5SSatish Balay #define __FUNC__ "MatGetRow_SeqBAIJ"
6609867e207SSatish Balay int MatGetRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
6619867e207SSatish Balay {
6629867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6637e67e3f9SSatish Balay   int          itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
6649867e207SSatish Balay   Scalar      *aa,*v_i,*aa_i;
6659867e207SSatish Balay 
666*3a40ed3dSBarry Smith   PetscFunctionBegin;
6679867e207SSatish Balay   bs  = a->bs;
6689867e207SSatish Balay   ai  = a->i;
6699867e207SSatish Balay   aj  = a->j;
6709867e207SSatish Balay   aa  = a->a;
6719df24120SSatish Balay   bs2 = a->bs2;
6729867e207SSatish Balay 
673e3372554SBarry Smith   if (row < 0 || row >= a->m) SETERRQ(1,0,"Row out of range");
6749867e207SSatish Balay 
6759867e207SSatish Balay   bn  = row/bs;   /* Block number */
6769867e207SSatish Balay   bp  = row % bs; /* Block Position */
6779867e207SSatish Balay   M   = ai[bn+1] - ai[bn];
6789867e207SSatish Balay   *nz = bs*M;
6799867e207SSatish Balay 
6809867e207SSatish Balay   if (v) {
6819867e207SSatish Balay     *v = 0;
6829867e207SSatish Balay     if (*nz) {
6839867e207SSatish Balay       *v = (Scalar *) PetscMalloc( (*nz)*sizeof(Scalar) ); CHKPTRQ(*v);
6849867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6859867e207SSatish Balay         v_i  = *v + i*bs;
6867e67e3f9SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
6877e67e3f9SSatish Balay         for ( j=bp,k=0; j<bs2; j+=bs,k++ ) {v_i[k] = aa_i[j];}
6889867e207SSatish Balay       }
6899867e207SSatish Balay     }
6909867e207SSatish Balay   }
6919867e207SSatish Balay 
6929867e207SSatish Balay   if (idx) {
6939867e207SSatish Balay     *idx = 0;
6949867e207SSatish Balay     if (*nz) {
6959867e207SSatish Balay       *idx = (int *) PetscMalloc( (*nz)*sizeof(int) ); CHKPTRQ(*idx);
6969867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6979867e207SSatish Balay         idx_i = *idx + i*bs;
6989867e207SSatish Balay         itmp  = bs*aj[ai[bn] + i];
6999867e207SSatish Balay         for ( j=0; j<bs; j++ ) {idx_i[j] = itmp++;}
7009867e207SSatish Balay       }
7019867e207SSatish Balay     }
7029867e207SSatish Balay   }
703*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
7049867e207SSatish Balay }
7059867e207SSatish Balay 
7065615d1e5SSatish Balay #undef __FUNC__
707d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRow_SeqBAIJ"
7089867e207SSatish Balay int MatRestoreRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
7099867e207SSatish Balay {
710*3a40ed3dSBarry Smith   PetscFunctionBegin;
7119867e207SSatish Balay   if (idx) {if (*idx) PetscFree(*idx);}
7129867e207SSatish Balay   if (v)   {if (*v)   PetscFree(*v);}
713*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
7149867e207SSatish Balay }
715b6490206SBarry Smith 
7165615d1e5SSatish Balay #undef __FUNC__
7175615d1e5SSatish Balay #define __FUNC__ "MatTranspose_SeqBAIJ"
7188f6be9afSLois Curfman McInnes int MatTranspose_SeqBAIJ(Mat A,Mat *B)
719f2501298SSatish Balay {
720f2501298SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data;
721f2501298SSatish Balay   Mat         C;
722f2501298SSatish Balay   int         i,j,k,ierr,*aj=a->j,*ai=a->i,bs=a->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
7239df24120SSatish Balay   int         *rows,*cols,bs2=a->bs2;
724f2501298SSatish Balay   Scalar      *array=a->a;
725f2501298SSatish Balay 
726*3a40ed3dSBarry Smith   PetscFunctionBegin;
727*3a40ed3dSBarry Smith   if (B==PETSC_NULL && mbs!=nbs) SETERRQ(1,0,"Square matrix only for in-place");
728f2501298SSatish Balay   col = (int *) PetscMalloc((1+nbs)*sizeof(int)); CHKPTRQ(col);
729f2501298SSatish Balay   PetscMemzero(col,(1+nbs)*sizeof(int));
730a7c10996SSatish Balay 
731a7c10996SSatish Balay   for ( i=0; i<ai[mbs]; i++ ) col[aj[i]] += 1;
732f2501298SSatish Balay   ierr = MatCreateSeqBAIJ(A->comm,bs,a->n,a->m,PETSC_NULL,col,&C); CHKERRQ(ierr);
733f2501298SSatish Balay   PetscFree(col);
734f2501298SSatish Balay   rows = (int *) PetscMalloc(2*bs*sizeof(int)); CHKPTRQ(rows);
735f2501298SSatish Balay   cols = rows + bs;
736f2501298SSatish Balay   for ( i=0; i<mbs; i++ ) {
737f2501298SSatish Balay     cols[0] = i*bs;
738f2501298SSatish Balay     for (k=1; k<bs; k++ ) cols[k] = cols[k-1] + 1;
739f2501298SSatish Balay     len = ai[i+1] - ai[i];
740f2501298SSatish Balay     for ( j=0; j<len; j++ ) {
741f2501298SSatish Balay       rows[0] = (*aj++)*bs;
742f2501298SSatish Balay       for (k=1; k<bs; k++ ) rows[k] = rows[k-1] + 1;
743f2501298SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES); CHKERRQ(ierr);
744f2501298SSatish Balay       array += bs2;
745f2501298SSatish Balay     }
746f2501298SSatish Balay   }
7471073c447SSatish Balay   PetscFree(rows);
748f2501298SSatish Balay 
7496d4a8577SBarry Smith   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
7506d4a8577SBarry Smith   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
751f2501298SSatish Balay 
752f2501298SSatish Balay   if (B != PETSC_NULL) {
753f2501298SSatish Balay     *B = C;
754f2501298SSatish Balay   } else {
755f2501298SSatish Balay     /* This isn't really an in-place transpose */
756f2501298SSatish Balay     PetscFree(a->a);
757f2501298SSatish Balay     if (!a->singlemalloc) {PetscFree(a->i); PetscFree(a->j);}
758f2501298SSatish Balay     if (a->diag) PetscFree(a->diag);
759f2501298SSatish Balay     if (a->ilen) PetscFree(a->ilen);
760f2501298SSatish Balay     if (a->imax) PetscFree(a->imax);
761f2501298SSatish Balay     if (a->solve_work) PetscFree(a->solve_work);
762f2501298SSatish Balay     PetscFree(a);
763f09e8eb9SSatish Balay     PetscMemcpy(A,C,sizeof(struct _p_Mat));
764f2501298SSatish Balay     PetscHeaderDestroy(C);
765f2501298SSatish Balay   }
766*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
767f2501298SSatish Balay }
768f2501298SSatish Balay 
769f2501298SSatish Balay 
7705615d1e5SSatish Balay #undef __FUNC__
7715615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_SeqBAIJ"
7728f6be9afSLois Curfman McInnes int MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
773584200bdSSatish Balay {
774584200bdSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
775584200bdSSatish Balay   int        fshift = 0,i,j,*ai = a->i, *aj = a->j, *imax = a->imax;
776a7c10996SSatish Balay   int        m = a->m,*ip, N, *ailen = a->ilen;
77743ee02c3SBarry Smith   int        mbs = a->mbs, bs2 = a->bs2,rmax = 0;
778584200bdSSatish Balay   Scalar     *aa = a->a, *ap;
779584200bdSSatish Balay 
780*3a40ed3dSBarry Smith   PetscFunctionBegin;
781*3a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
782584200bdSSatish Balay 
78343ee02c3SBarry Smith   if (m) rmax = ailen[0];
784584200bdSSatish Balay   for ( i=1; i<mbs; i++ ) {
785584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
786584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
787d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
788584200bdSSatish Balay     if (fshift) {
789a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
790584200bdSSatish Balay       N = ailen[i];
791584200bdSSatish Balay       for ( j=0; j<N; j++ ) {
792584200bdSSatish Balay         ip[j-fshift] = ip[j];
7937e67e3f9SSatish Balay         PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(Scalar));
794584200bdSSatish Balay       }
795584200bdSSatish Balay     }
796584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
797584200bdSSatish Balay   }
798584200bdSSatish Balay   if (mbs) {
799584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
800584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
801584200bdSSatish Balay   }
802584200bdSSatish Balay   /* reset ilen and imax for each row */
803584200bdSSatish Balay   for ( i=0; i<mbs; i++ ) {
804584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
805584200bdSSatish Balay   }
806a7c10996SSatish Balay   a->nz = ai[mbs];
807584200bdSSatish Balay 
808584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
809584200bdSSatish Balay   if (fshift && a->diag) {
810584200bdSSatish Balay     PetscFree(a->diag);
811584200bdSSatish Balay     PLogObjectMemory(A,-(m+1)*sizeof(int));
812584200bdSSatish Balay     a->diag = 0;
813584200bdSSatish Balay   }
8143d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n",
815219d9a1aSLois Curfman McInnes            m,a->n,a->bs,fshift*bs2,a->nz*bs2);
8163d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Number of mallocs during MatSetValues is %d\n",
817584200bdSSatish Balay            a->reallocs);
818d402145bSBarry Smith   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Most nonzeros blocks in any row is %d\n",rmax);
819e2f3b5e9SSatish Balay   a->reallocs          = 0;
8204e220ebcSLois Curfman McInnes   A->info.nz_unneeded  = (double)fshift*bs2;
8214e220ebcSLois Curfman McInnes 
822*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
823584200bdSSatish Balay }
824584200bdSSatish Balay 
8255615d1e5SSatish Balay #undef __FUNC__
8265615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_SeqBAIJ"
8278f6be9afSLois Curfman McInnes int MatZeroEntries_SeqBAIJ(Mat A)
8282593348eSBarry Smith {
829b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
830*3a40ed3dSBarry Smith 
831*3a40ed3dSBarry Smith   PetscFunctionBegin;
8329df24120SSatish Balay   PetscMemzero(a->a,a->bs2*a->i[a->mbs]*sizeof(Scalar));
833*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
8342593348eSBarry Smith }
8352593348eSBarry Smith 
8365615d1e5SSatish Balay #undef __FUNC__
837d4bb536fSBarry Smith #define __FUNC__ "MatDestroy_SeqBAIJ"
838b6490206SBarry Smith int MatDestroy_SeqBAIJ(PetscObject obj)
8392593348eSBarry Smith {
8402593348eSBarry Smith   Mat         A  = (Mat) obj;
841b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
8422593348eSBarry Smith 
843*3a40ed3dSBarry Smith #if defined(USE_PETSC_LOG)
8442593348eSBarry Smith   PLogObjectState(obj,"Rows=%d, Cols=%d, NZ=%d",a->m,a->n,a->nz);
8452593348eSBarry Smith #endif
8462593348eSBarry Smith   PetscFree(a->a);
8472593348eSBarry Smith   if (!a->singlemalloc) { PetscFree(a->i); PetscFree(a->j);}
8482593348eSBarry Smith   if (a->diag) PetscFree(a->diag);
8492593348eSBarry Smith   if (a->ilen) PetscFree(a->ilen);
8502593348eSBarry Smith   if (a->imax) PetscFree(a->imax);
8512593348eSBarry Smith   if (a->solve_work) PetscFree(a->solve_work);
852de6a44a3SBarry Smith   if (a->mult_work) PetscFree(a->mult_work);
8532593348eSBarry Smith   PetscFree(a);
854f2655603SLois Curfman McInnes   PLogObjectDestroy(A);
855f2655603SLois Curfman McInnes   PetscHeaderDestroy(A);
856*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
8572593348eSBarry Smith }
8582593348eSBarry Smith 
8595615d1e5SSatish Balay #undef __FUNC__
860d4bb536fSBarry Smith #define __FUNC__ "MatSetOption_SeqBAIJ"
8618f6be9afSLois Curfman McInnes int MatSetOption_SeqBAIJ(Mat A,MatOption op)
8622593348eSBarry Smith {
863b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
864*3a40ed3dSBarry Smith 
865*3a40ed3dSBarry Smith   PetscFunctionBegin;
8666d4a8577SBarry Smith   if      (op == MAT_ROW_ORIENTED)                 a->roworiented = 1;
8676d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED)              a->roworiented = 0;
8686d4a8577SBarry Smith   else if (op == MAT_COLUMNS_SORTED)               a->sorted      = 1;
869219d9a1aSLois Curfman McInnes   else if (op == MAT_COLUMNS_UNSORTED)             a->sorted      = 0;
8706d4a8577SBarry Smith   else if (op == MAT_NO_NEW_NONZERO_LOCATIONS)     a->nonew       = 1;
871c2653b3dSLois Curfman McInnes   else if (op == MAT_NEW_NONZERO_LOCATION_ERROR)   a->nonew       = -1;
87296854ed6SLois Curfman McInnes   else if (op == MAT_NEW_NONZERO_ALLOCATION_ERROR) a->nonew       = -2;
8736d4a8577SBarry Smith   else if (op == MAT_YES_NEW_NONZERO_LOCATIONS)    a->nonew       = 0;
8746d4a8577SBarry Smith   else if (op == MAT_ROWS_SORTED ||
875219d9a1aSLois Curfman McInnes            op == MAT_ROWS_UNSORTED ||
8766d4a8577SBarry Smith            op == MAT_SYMMETRIC ||
8776d4a8577SBarry Smith            op == MAT_STRUCTURALLY_SYMMETRIC ||
87890f02eecSBarry Smith            op == MAT_YES_NEW_DIAGONALS ||
879*3a40ed3dSBarry Smith            op == MAT_IGNORE_OFF_PROC_ENTRIES) {
88094a424c1SBarry Smith     PLogInfo(A,"Info:MatSetOption_SeqBAIJ:Option ignored\n");
881*3a40ed3dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
882*3a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
883*3a40ed3dSBarry Smith   } else {
884*3a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
885*3a40ed3dSBarry Smith   }
886*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
8872593348eSBarry Smith }
8882593348eSBarry Smith 
8892593348eSBarry Smith 
8902593348eSBarry Smith /* -------------------------------------------------------*/
8912593348eSBarry Smith /* Should check that shapes of vectors and matrices match */
8922593348eSBarry Smith /* -------------------------------------------------------*/
893b6490206SBarry Smith #include "pinclude/plapack.h"
894b6490206SBarry Smith 
8955615d1e5SSatish Balay #undef __FUNC__
8965615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_1"
89739b95ed1SBarry Smith static int MatMult_SeqBAIJ_1(Mat A,Vec xx,Vec zz)
8982593348eSBarry Smith {
899b6490206SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
90039b95ed1SBarry Smith   register Scalar *x,*z,*v,sum;
901c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
9022593348eSBarry Smith 
903*3a40ed3dSBarry Smith   PetscFunctionBegin;
904c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
905c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
906b6490206SBarry Smith 
907119a934aSSatish Balay   idx   = a->j;
908119a934aSSatish Balay   v     = a->a;
909119a934aSSatish Balay   ii    = a->i;
910119a934aSSatish Balay 
911119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
912119a934aSSatish Balay     n    = ii[1] - ii[0]; ii++;
913119a934aSSatish Balay     sum  = 0.0;
914119a934aSSatish Balay     while (n--) sum += *v++ * x[*idx++];
9151a6a6d98SBarry Smith     z[i] = sum;
916119a934aSSatish Balay   }
917c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
918c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
91939b95ed1SBarry Smith   PLogFlops(2*a->nz - a->m);
920*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
92139b95ed1SBarry Smith }
92239b95ed1SBarry Smith 
9235615d1e5SSatish Balay #undef __FUNC__
9245615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_2"
92539b95ed1SBarry Smith static int MatMult_SeqBAIJ_2(Mat A,Vec xx,Vec zz)
92639b95ed1SBarry Smith {
92739b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
92839b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2;
92939b95ed1SBarry Smith   register Scalar x1,x2;
930*3a40ed3dSBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
93139b95ed1SBarry Smith 
932*3a40ed3dSBarry Smith   PetscFunctionBegin;
933c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
934c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
93539b95ed1SBarry Smith 
93639b95ed1SBarry Smith   idx   = a->j;
93739b95ed1SBarry Smith   v     = a->a;
93839b95ed1SBarry Smith   ii    = a->i;
93939b95ed1SBarry Smith 
940119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
941119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
942119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0;
943119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
944119a934aSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
945119a934aSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
946119a934aSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
947119a934aSSatish Balay       v += 4;
948119a934aSSatish Balay     }
9491a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2;
950119a934aSSatish Balay     z += 2;
951119a934aSSatish Balay   }
952c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
953c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
95439b95ed1SBarry Smith   PLogFlops(4*a->nz - a->m);
955*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
95639b95ed1SBarry Smith }
95739b95ed1SBarry Smith 
9585615d1e5SSatish Balay #undef __FUNC__
9595615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_3"
96039b95ed1SBarry Smith static int MatMult_SeqBAIJ_3(Mat A,Vec xx,Vec zz)
96139b95ed1SBarry Smith {
96239b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
96339b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
964c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
96539b95ed1SBarry Smith 
966*3a40ed3dSBarry Smith   PetscFunctionBegin;
967c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
968c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
96939b95ed1SBarry Smith 
97039b95ed1SBarry Smith   idx   = a->j;
97139b95ed1SBarry Smith   v     = a->a;
97239b95ed1SBarry Smith   ii    = a->i;
97339b95ed1SBarry Smith 
974119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
975119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
976119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0;
977119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
978119a934aSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
979119a934aSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
980119a934aSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
981119a934aSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
982119a934aSSatish Balay       v += 9;
983119a934aSSatish Balay     }
9841a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3;
985119a934aSSatish Balay     z += 3;
986119a934aSSatish Balay   }
987c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
988c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
98939b95ed1SBarry Smith   PLogFlops(18*a->nz - a->m);
990*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
99139b95ed1SBarry Smith }
99239b95ed1SBarry Smith 
9935615d1e5SSatish Balay #undef __FUNC__
9945615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_4"
99539b95ed1SBarry Smith static int MatMult_SeqBAIJ_4(Mat A,Vec xx,Vec zz)
99639b95ed1SBarry Smith {
99739b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
998*3a40ed3dSBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,x1,x2,x3,x4;
999*3a40ed3dSBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
100039b95ed1SBarry Smith 
1001*3a40ed3dSBarry Smith   PetscFunctionBegin;
1002c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1003c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
100439b95ed1SBarry Smith 
100539b95ed1SBarry Smith   idx   = a->j;
100639b95ed1SBarry Smith   v     = a->a;
100739b95ed1SBarry Smith   ii    = a->i;
100839b95ed1SBarry Smith 
1009119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1010119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
1011119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0;
1012119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1013119a934aSSatish Balay       xb = x + 4*(*idx++);
1014119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1015119a934aSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
1016119a934aSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
1017119a934aSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
1018119a934aSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
1019119a934aSSatish Balay       v += 16;
1020119a934aSSatish Balay     }
10211a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
1022119a934aSSatish Balay     z += 4;
1023119a934aSSatish Balay   }
1024c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1025c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
102639b95ed1SBarry Smith   PLogFlops(32*a->nz - a->m);
1027*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
102839b95ed1SBarry Smith }
102939b95ed1SBarry Smith 
10305615d1e5SSatish Balay #undef __FUNC__
10315615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_5"
103239b95ed1SBarry Smith static int MatMult_SeqBAIJ_5(Mat A,Vec xx,Vec zz)
103339b95ed1SBarry Smith {
103439b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1035*3a40ed3dSBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,x1,x2,x3,x4,x5;
1036c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
103739b95ed1SBarry Smith 
1038c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1039c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
104039b95ed1SBarry Smith 
104139b95ed1SBarry Smith   idx   = a->j;
104239b95ed1SBarry Smith   v     = a->a;
104339b95ed1SBarry Smith   ii    = a->i;
104439b95ed1SBarry Smith 
1045119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1046119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
1047119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0;
1048119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1049119a934aSSatish Balay       xb = x + 5*(*idx++);
1050119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1051119a934aSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1052119a934aSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1053119a934aSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1054119a934aSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1055119a934aSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1056119a934aSSatish Balay       v += 25;
1057119a934aSSatish Balay     }
10581a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1059119a934aSSatish Balay     z += 5;
1060119a934aSSatish Balay   }
1061c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1062c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
106339b95ed1SBarry Smith   PLogFlops(50*a->nz - a->m);
1064*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
106539b95ed1SBarry Smith }
106639b95ed1SBarry Smith 
10675615d1e5SSatish Balay #undef __FUNC__
106848e9ddb2SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_7"
106948e9ddb2SSatish Balay static int MatMult_SeqBAIJ_7(Mat A,Vec xx,Vec zz)
107048e9ddb2SSatish Balay {
107148e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
107248e9ddb2SSatish Balay   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
107348e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
107448e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
107548e9ddb2SSatish Balay 
107648e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
107748e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
107848e9ddb2SSatish Balay 
107948e9ddb2SSatish Balay   idx   = a->j;
108048e9ddb2SSatish Balay   v     = a->a;
108148e9ddb2SSatish Balay   ii    = a->i;
108248e9ddb2SSatish Balay 
108348e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
108448e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
108548e9ddb2SSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; sum6 = 0.0; sum7 = 0.0;
108648e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
108748e9ddb2SSatish Balay       xb = x + 7*(*idx++);
108848e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
108948e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
109048e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
109148e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
109248e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
109348e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
109448e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
109548e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
109648e9ddb2SSatish Balay       v += 49;
109748e9ddb2SSatish Balay     }
109848e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
109948e9ddb2SSatish Balay     z += 7;
110048e9ddb2SSatish Balay   }
110148e9ddb2SSatish Balay 
110248e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
110348e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
110448e9ddb2SSatish Balay   PLogFlops(98*a->nz - a->m);
1105*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
110648e9ddb2SSatish Balay }
110748e9ddb2SSatish Balay 
110848e9ddb2SSatish Balay #undef __FUNC__
11095615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_N"
111039b95ed1SBarry Smith static int MatMult_SeqBAIJ_N(Mat A,Vec xx,Vec zz)
111139b95ed1SBarry Smith {
111239b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
111339b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb;
1114*3a40ed3dSBarry Smith   Scalar          _DOne = 1.0,*work,*workt,_DZero = 0.0;
1115c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2;
1116c16cb8f2SBarry Smith   int             _One = 1,ncols,k;
111739b95ed1SBarry Smith 
1118*3a40ed3dSBarry Smith   PetscFunctionBegin;
1119c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1120c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
112139b95ed1SBarry Smith 
112239b95ed1SBarry Smith   idx   = a->j;
112339b95ed1SBarry Smith   v     = a->a;
112439b95ed1SBarry Smith   ii    = a->i;
112539b95ed1SBarry Smith 
112639b95ed1SBarry Smith 
1127119a934aSSatish Balay   if (!a->mult_work) {
11283b547af2SSatish Balay     k = PetscMax(a->m,a->n);
11292b3076dcSSatish Balay     a->mult_work = (Scalar *) PetscMalloc((k+1)*sizeof(Scalar));CHKPTRQ(a->mult_work);
1130119a934aSSatish Balay   }
1131119a934aSSatish Balay   work = a->mult_work;
1132119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1133119a934aSSatish Balay     n     = ii[1] - ii[0]; ii++;
1134119a934aSSatish Balay     ncols = n*bs;
1135119a934aSSatish Balay     workt = work;
1136119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1137119a934aSSatish Balay       xb = x + bs*(*idx++);
1138119a934aSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1139119a934aSSatish Balay       workt += bs;
1140119a934aSSatish Balay     }
11411a6a6d98SBarry Smith     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DZero,z,&_One);
1142119a934aSSatish Balay     v += n*bs2;
1143119a934aSSatish Balay     z += bs;
1144119a934aSSatish Balay   }
1145c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1146c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
11471a6a6d98SBarry Smith   PLogFlops(2*a->nz*bs2 - a->m);
1148*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1149bb42667fSSatish Balay }
1150bb42667fSSatish Balay 
11515615d1e5SSatish Balay #undef __FUNC__
11525615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_1"
1153f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_1(Mat A,Vec xx,Vec yy,Vec zz)
1154f44d3a6dSSatish Balay {
1155f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1156f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,sum;
1157c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
1158f44d3a6dSSatish Balay 
1159*3a40ed3dSBarry Smith   PetscFunctionBegin;
1160c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1161c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1162c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1163f44d3a6dSSatish Balay 
1164f44d3a6dSSatish Balay   idx   = a->j;
1165f44d3a6dSSatish Balay   v     = a->a;
1166f44d3a6dSSatish Balay   ii    = a->i;
1167f44d3a6dSSatish Balay 
1168f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1169f44d3a6dSSatish Balay     n    = ii[1] - ii[0]; ii++;
1170f44d3a6dSSatish Balay     sum  = y[i];
1171f44d3a6dSSatish Balay     while (n--) sum += *v++ * x[*idx++];
1172f44d3a6dSSatish Balay     z[i] = sum;
1173f44d3a6dSSatish Balay   }
1174c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1175c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1176c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1177f44d3a6dSSatish Balay   PLogFlops(2*a->nz);
1178*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1179f44d3a6dSSatish Balay }
1180f44d3a6dSSatish Balay 
11815615d1e5SSatish Balay #undef __FUNC__
11825615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_2"
1183f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_2(Mat A,Vec xx,Vec yy,Vec zz)
1184f44d3a6dSSatish Balay {
1185f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1186f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2;
1187f44d3a6dSSatish Balay   register Scalar x1,x2;
1188*3a40ed3dSBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1189f44d3a6dSSatish Balay 
1190*3a40ed3dSBarry Smith   PetscFunctionBegin;
1191c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1192c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1193c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1194f44d3a6dSSatish Balay 
1195f44d3a6dSSatish Balay   idx   = a->j;
1196f44d3a6dSSatish Balay   v     = a->a;
1197f44d3a6dSSatish Balay   ii    = a->i;
1198f44d3a6dSSatish Balay 
1199f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1200f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1201f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1];
1202f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1203f44d3a6dSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
1204f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
1205f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
1206f44d3a6dSSatish Balay       v += 4;
1207f44d3a6dSSatish Balay     }
1208f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2;
1209f44d3a6dSSatish Balay     z += 2; y += 2;
1210f44d3a6dSSatish Balay   }
1211c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1212c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1213c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1214f44d3a6dSSatish Balay   PLogFlops(4*a->nz);
1215*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1216f44d3a6dSSatish Balay }
1217f44d3a6dSSatish Balay 
12185615d1e5SSatish Balay #undef __FUNC__
12195615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_3"
1220f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_3(Mat A,Vec xx,Vec yy,Vec zz)
1221f44d3a6dSSatish Balay {
1222f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1223f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
1224c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1225f44d3a6dSSatish Balay 
1226*3a40ed3dSBarry Smith   PetscFunctionBegin;
1227c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1228c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1229c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1230f44d3a6dSSatish Balay 
1231f44d3a6dSSatish Balay   idx   = a->j;
1232f44d3a6dSSatish Balay   v     = a->a;
1233f44d3a6dSSatish Balay   ii    = a->i;
1234f44d3a6dSSatish Balay 
1235f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1236f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1237f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2];
1238f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1239f44d3a6dSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1240f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
1241f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
1242f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
1243f44d3a6dSSatish Balay       v += 9;
1244f44d3a6dSSatish Balay     }
1245f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3;
1246f44d3a6dSSatish Balay     z += 3; y += 3;
1247f44d3a6dSSatish Balay   }
1248c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1249c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1250c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1251f44d3a6dSSatish Balay   PLogFlops(18*a->nz);
1252*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1253f44d3a6dSSatish Balay }
1254f44d3a6dSSatish Balay 
12555615d1e5SSatish Balay #undef __FUNC__
12565615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_4"
1257f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_4(Mat A,Vec xx,Vec yy,Vec zz)
1258f44d3a6dSSatish Balay {
1259f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1260*3a40ed3dSBarry Smith   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,x1,x2,x3,x4;
1261f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii;
1262c16cb8f2SBarry Smith   int             j,n;
1263f44d3a6dSSatish Balay 
1264*3a40ed3dSBarry Smith   PetscFunctionBegin;
1265c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1266c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1267c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1268f44d3a6dSSatish Balay 
1269f44d3a6dSSatish Balay   idx   = a->j;
1270f44d3a6dSSatish Balay   v     = a->a;
1271f44d3a6dSSatish Balay   ii    = a->i;
1272f44d3a6dSSatish Balay 
1273f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1274f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1275f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3];
1276f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1277f44d3a6dSSatish Balay       xb = x + 4*(*idx++);
1278f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1279f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
1280f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
1281f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
1282f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
1283f44d3a6dSSatish Balay       v += 16;
1284f44d3a6dSSatish Balay     }
1285f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
1286f44d3a6dSSatish Balay     z += 4; y += 4;
1287f44d3a6dSSatish Balay   }
1288c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1289c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1290c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1291f44d3a6dSSatish Balay   PLogFlops(32*a->nz);
1292*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1293f44d3a6dSSatish Balay }
1294f44d3a6dSSatish Balay 
12955615d1e5SSatish Balay #undef __FUNC__
12965615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_5"
1297f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_5(Mat A,Vec xx,Vec yy,Vec zz)
1298f44d3a6dSSatish Balay {
1299f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1300*3a40ed3dSBarry Smith   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,x1,x2,x3,x4,x5;
1301c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1302f44d3a6dSSatish Balay 
1303*3a40ed3dSBarry Smith   PetscFunctionBegin;
1304c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1305c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1306c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1307f44d3a6dSSatish Balay 
1308f44d3a6dSSatish Balay   idx   = a->j;
1309f44d3a6dSSatish Balay   v     = a->a;
1310f44d3a6dSSatish Balay   ii    = a->i;
1311f44d3a6dSSatish Balay 
1312f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1313f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1314f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4];
1315f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1316f44d3a6dSSatish Balay       xb = x + 5*(*idx++);
1317f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1318f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1319f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1320f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1321f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1322f44d3a6dSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1323f44d3a6dSSatish Balay       v += 25;
1324f44d3a6dSSatish Balay     }
1325f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1326f44d3a6dSSatish Balay     z += 5; y += 5;
1327f44d3a6dSSatish Balay   }
1328c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1329c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1330c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1331f44d3a6dSSatish Balay   PLogFlops(50*a->nz);
1332*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1333f44d3a6dSSatish Balay }
1334f44d3a6dSSatish Balay 
13355615d1e5SSatish Balay #undef __FUNC__
133648e9ddb2SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_7"
133748e9ddb2SSatish Balay static int MatMultAdd_SeqBAIJ_7(Mat A,Vec xx,Vec yy,Vec zz)
133848e9ddb2SSatish Balay {
133948e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
134048e9ddb2SSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
134148e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
134248e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
134348e9ddb2SSatish Balay 
1344*3a40ed3dSBarry Smith   PetscFunctionBegin;
134548e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
134648e9ddb2SSatish Balay   VecGetArray_Fast(yy,y);
134748e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
134848e9ddb2SSatish Balay 
134948e9ddb2SSatish Balay   idx   = a->j;
135048e9ddb2SSatish Balay   v     = a->a;
135148e9ddb2SSatish Balay   ii    = a->i;
135248e9ddb2SSatish Balay 
135348e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
135448e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
135548e9ddb2SSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; sum6 = y[5]; sum7 = y[6];
135648e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
135748e9ddb2SSatish Balay       xb = x + 7*(*idx++);
135848e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
135948e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
136048e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
136148e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
136248e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
136348e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
136448e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
136548e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
136648e9ddb2SSatish Balay       v += 49;
136748e9ddb2SSatish Balay     }
136848e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
136948e9ddb2SSatish Balay     z += 7; y += 7;
137048e9ddb2SSatish Balay   }
137148e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
137248e9ddb2SSatish Balay   VecRestoreArray_Fast(yy,y);
137348e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
137448e9ddb2SSatish Balay   PLogFlops(98*a->nz);
1375*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
137648e9ddb2SSatish Balay }
137748e9ddb2SSatish Balay 
137848e9ddb2SSatish Balay 
137948e9ddb2SSatish Balay #undef __FUNC__
13805615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_N"
1381f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_N(Mat A,Vec xx,Vec yy,Vec zz)
1382f44d3a6dSSatish Balay {
1383f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1384f44d3a6dSSatish Balay   register Scalar *x,*z,*v,*xb;
1385f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2,ierr;
1386f44d3a6dSSatish Balay   int             _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1387f44d3a6dSSatish Balay 
1388*3a40ed3dSBarry Smith   PetscFunctionBegin;
1389f44d3a6dSSatish Balay   if ( xx != yy) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1390f44d3a6dSSatish Balay 
1391c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1392c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1393f44d3a6dSSatish Balay 
1394f44d3a6dSSatish Balay   idx   = a->j;
1395f44d3a6dSSatish Balay   v     = a->a;
1396f44d3a6dSSatish Balay   ii    = a->i;
1397f44d3a6dSSatish Balay 
1398f44d3a6dSSatish Balay 
1399f44d3a6dSSatish Balay   if (!a->mult_work) {
1400f44d3a6dSSatish Balay     k = PetscMax(a->m,a->n);
1401f44d3a6dSSatish Balay     a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));CHKPTRQ(a->mult_work);
1402f44d3a6dSSatish Balay   }
1403f44d3a6dSSatish Balay   work = a->mult_work;
1404f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1405f44d3a6dSSatish Balay     n     = ii[1] - ii[0]; ii++;
1406f44d3a6dSSatish Balay     ncols = n*bs;
1407f44d3a6dSSatish Balay     workt = work;
1408f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1409f44d3a6dSSatish Balay       xb = x + bs*(*idx++);
1410f44d3a6dSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1411f44d3a6dSSatish Balay       workt += bs;
1412f44d3a6dSSatish Balay     }
1413f44d3a6dSSatish Balay     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DOne,z,&_One);
1414f44d3a6dSSatish Balay     v += n*bs2;
1415f44d3a6dSSatish Balay     z += bs;
1416f44d3a6dSSatish Balay   }
1417c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1418c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1419f44d3a6dSSatish Balay   PLogFlops(2*a->nz*bs2 );
1420*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1421f44d3a6dSSatish Balay }
1422f44d3a6dSSatish Balay 
14235615d1e5SSatish Balay #undef __FUNC__
14245615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_SeqBAIJ"
14258f6be9afSLois Curfman McInnes int MatMultTrans_SeqBAIJ(Mat A,Vec xx,Vec zz)
1426bb42667fSSatish Balay {
1427bb42667fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
14281a6a6d98SBarry Smith   Scalar          *xg,*zg,*zb;
1429bb42667fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1430bb1453f0SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
14319df24120SSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1432119a934aSSatish Balay 
1433119a934aSSatish Balay 
1434*3a40ed3dSBarry Smith   PetscFunctionBegin;
143590f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
143690f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1437bb1453f0SSatish Balay   PetscMemzero(z,N*sizeof(Scalar));
1438bb42667fSSatish Balay 
1439119a934aSSatish Balay   idx   = a->j;
1440119a934aSSatish Balay   v     = a->a;
1441119a934aSSatish Balay   ii    = a->i;
1442119a934aSSatish Balay 
1443119a934aSSatish Balay   switch (bs) {
1444119a934aSSatish Balay   case 1:
1445119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1446119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1447119a934aSSatish Balay       xb = x + i; x1 = xb[0];
1448119a934aSSatish Balay       ib = idx + ai[i];
1449119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1450bb1453f0SSatish Balay         rval    = ib[j];
1451bb1453f0SSatish Balay         z[rval] += *v++ * x1;
1452119a934aSSatish Balay       }
1453119a934aSSatish Balay     }
1454119a934aSSatish Balay     break;
1455119a934aSSatish Balay   case 2:
1456119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1457119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1458119a934aSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1459119a934aSSatish Balay       ib = idx + ai[i];
1460119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1461119a934aSSatish Balay         rval      = ib[j]*2;
1462bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1463bb1453f0SSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1464119a934aSSatish Balay         v += 4;
1465119a934aSSatish Balay       }
1466119a934aSSatish Balay     }
1467119a934aSSatish Balay     break;
1468119a934aSSatish Balay   case 3:
1469119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1470119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1471119a934aSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1472119a934aSSatish Balay       ib = idx + ai[i];
1473119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1474119a934aSSatish Balay         rval      = ib[j]*3;
1475bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1476bb1453f0SSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1477bb1453f0SSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1478119a934aSSatish Balay         v += 9;
1479119a934aSSatish Balay       }
1480119a934aSSatish Balay     }
1481119a934aSSatish Balay     break;
1482119a934aSSatish Balay   case 4:
1483119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1484119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1485119a934aSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1486119a934aSSatish Balay       ib = idx + ai[i];
1487119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1488119a934aSSatish Balay         rval      = ib[j]*4;
1489bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1490bb1453f0SSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1491bb1453f0SSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1492bb1453f0SSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1493119a934aSSatish Balay         v += 16;
1494119a934aSSatish Balay       }
1495119a934aSSatish Balay     }
1496119a934aSSatish Balay     break;
1497119a934aSSatish Balay   case 5:
1498119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1499119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1500119a934aSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1501119a934aSSatish Balay       x4 = xb[3];   x5 = xb[4];
1502119a934aSSatish Balay       ib = idx + ai[i];
1503119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1504119a934aSSatish Balay         rval      = ib[j]*5;
1505bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1506bb1453f0SSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1507bb1453f0SSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1508bb1453f0SSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1509bb1453f0SSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1510119a934aSSatish Balay         v += 25;
1511119a934aSSatish Balay       }
1512119a934aSSatish Balay     }
1513119a934aSSatish Balay     break;
1514119a934aSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1515119a934aSSatish Balay     default: {
1516119a934aSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1517119a934aSSatish Balay       if (!a->mult_work) {
15183b547af2SSatish Balay         k = PetscMax(a->m,a->n);
1519bb42667fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1520119a934aSSatish Balay         CHKPTRQ(a->mult_work);
1521119a934aSSatish Balay       }
1522119a934aSSatish Balay       work = a->mult_work;
1523119a934aSSatish Balay       for ( i=0; i<mbs; i++ ) {
1524119a934aSSatish Balay         n     = ii[1] - ii[0]; ii++;
1525119a934aSSatish Balay         ncols = n*bs;
1526119a934aSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1527119a934aSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1528119a934aSSatish Balay         v += n*bs2;
1529119a934aSSatish Balay         x += bs;
1530119a934aSSatish Balay         workt = work;
1531119a934aSSatish Balay         for ( j=0; j<n; j++ ) {
1532119a934aSSatish Balay           zb = z + bs*(*idx++);
1533bb1453f0SSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1534119a934aSSatish Balay           workt += bs;
1535119a934aSSatish Balay         }
1536119a934aSSatish Balay       }
1537119a934aSSatish Balay     }
1538119a934aSSatish Balay   }
15390419e6cdSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
15400419e6cdSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1541faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2 - a->n);
1542*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1543faf6580fSSatish Balay }
15441c351548SSatish Balay 
15455615d1e5SSatish Balay #undef __FUNC__
15465615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_SeqBAIJ"
15478f6be9afSLois Curfman McInnes int MatMultTransAdd_SeqBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1548faf6580fSSatish Balay {
1549faf6580fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1550faf6580fSSatish Balay   Scalar          *xg,*zg,*zb;
1551faf6580fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1552faf6580fSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
1553faf6580fSSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1554faf6580fSSatish Balay 
1555*3a40ed3dSBarry Smith   PetscFunctionBegin;
155690f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
155790f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1558faf6580fSSatish Balay 
1559648c1d95SSatish Balay   if ( yy != zz ) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1560648c1d95SSatish Balay   else PetscMemzero(z,N*sizeof(Scalar));
1561648c1d95SSatish Balay 
1562faf6580fSSatish Balay   idx   = a->j;
1563faf6580fSSatish Balay   v     = a->a;
1564faf6580fSSatish Balay   ii    = a->i;
1565faf6580fSSatish Balay 
1566faf6580fSSatish Balay   switch (bs) {
1567faf6580fSSatish Balay   case 1:
1568faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1569faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1570faf6580fSSatish Balay       xb = x + i; x1 = xb[0];
1571faf6580fSSatish Balay       ib = idx + ai[i];
1572faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1573faf6580fSSatish Balay         rval    = ib[j];
1574faf6580fSSatish Balay         z[rval] += *v++ * x1;
1575faf6580fSSatish Balay       }
1576faf6580fSSatish Balay     }
1577faf6580fSSatish Balay     break;
1578faf6580fSSatish Balay   case 2:
1579faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1580faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1581faf6580fSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1582faf6580fSSatish Balay       ib = idx + ai[i];
1583faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1584faf6580fSSatish Balay         rval      = ib[j]*2;
1585faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1586faf6580fSSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1587faf6580fSSatish Balay         v += 4;
1588faf6580fSSatish Balay       }
1589faf6580fSSatish Balay     }
1590faf6580fSSatish Balay     break;
1591faf6580fSSatish Balay   case 3:
1592faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1593faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1594faf6580fSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1595faf6580fSSatish Balay       ib = idx + ai[i];
1596faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1597faf6580fSSatish Balay         rval      = ib[j]*3;
1598faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1599faf6580fSSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1600faf6580fSSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1601faf6580fSSatish Balay         v += 9;
1602faf6580fSSatish Balay       }
1603faf6580fSSatish Balay     }
1604faf6580fSSatish Balay     break;
1605faf6580fSSatish Balay   case 4:
1606faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1607faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1608faf6580fSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1609faf6580fSSatish Balay       ib = idx + ai[i];
1610faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1611faf6580fSSatish Balay         rval      = ib[j]*4;
1612faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1613faf6580fSSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1614faf6580fSSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1615faf6580fSSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1616faf6580fSSatish Balay         v += 16;
1617faf6580fSSatish Balay       }
1618faf6580fSSatish Balay     }
1619faf6580fSSatish Balay     break;
1620faf6580fSSatish Balay   case 5:
1621faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1622faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1623faf6580fSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1624faf6580fSSatish Balay       x4 = xb[3];   x5 = xb[4];
1625faf6580fSSatish Balay       ib = idx + ai[i];
1626faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1627faf6580fSSatish Balay         rval      = ib[j]*5;
1628faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1629faf6580fSSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1630faf6580fSSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1631faf6580fSSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1632faf6580fSSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1633faf6580fSSatish Balay         v += 25;
1634faf6580fSSatish Balay       }
1635faf6580fSSatish Balay     }
1636faf6580fSSatish Balay     break;
1637faf6580fSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1638faf6580fSSatish Balay     default: {
1639faf6580fSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1640faf6580fSSatish Balay       if (!a->mult_work) {
1641faf6580fSSatish Balay         k = PetscMax(a->m,a->n);
1642faf6580fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1643faf6580fSSatish Balay         CHKPTRQ(a->mult_work);
1644faf6580fSSatish Balay       }
1645faf6580fSSatish Balay       work = a->mult_work;
1646faf6580fSSatish Balay       for ( i=0; i<mbs; i++ ) {
1647faf6580fSSatish Balay         n     = ii[1] - ii[0]; ii++;
1648faf6580fSSatish Balay         ncols = n*bs;
1649faf6580fSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1650faf6580fSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1651faf6580fSSatish Balay         v += n*bs2;
1652faf6580fSSatish Balay         x += bs;
1653faf6580fSSatish Balay         workt = work;
1654faf6580fSSatish Balay         for ( j=0; j<n; j++ ) {
1655faf6580fSSatish Balay           zb = z + bs*(*idx++);
1656faf6580fSSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1657faf6580fSSatish Balay           workt += bs;
1658faf6580fSSatish Balay         }
1659faf6580fSSatish Balay       }
1660faf6580fSSatish Balay     }
1661faf6580fSSatish Balay   }
1662faf6580fSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
1663faf6580fSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1664faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2);
1665*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
16662593348eSBarry Smith }
16672593348eSBarry Smith 
16685615d1e5SSatish Balay #undef __FUNC__
1669d4bb536fSBarry Smith #define __FUNC__ "MatGetInfo_SeqBAIJ"
16708f6be9afSLois Curfman McInnes int MatGetInfo_SeqBAIJ(Mat A,MatInfoType flag,MatInfo *info)
16712593348eSBarry Smith {
1672b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
16734e220ebcSLois Curfman McInnes 
1674*3a40ed3dSBarry Smith   PetscFunctionBegin;
16754e220ebcSLois Curfman McInnes   info->rows_global    = (double)a->m;
16764e220ebcSLois Curfman McInnes   info->columns_global = (double)a->n;
16774e220ebcSLois Curfman McInnes   info->rows_local     = (double)a->m;
16784e220ebcSLois Curfman McInnes   info->columns_local  = (double)a->n;
16794e220ebcSLois Curfman McInnes   info->block_size     = a->bs2;
16804e220ebcSLois Curfman McInnes   info->nz_allocated   = a->maxnz;
16814e220ebcSLois Curfman McInnes   info->nz_used        = a->bs2*a->nz;
16824e220ebcSLois Curfman McInnes   info->nz_unneeded    = (double)(info->nz_allocated - info->nz_used);
16834e220ebcSLois Curfman McInnes   /*  if (info->nz_unneeded != A->info.nz_unneeded)
16844e220ebcSLois Curfman McInnes     printf("space descrepancy: maxnz-nz = %d, nz_unneeded = %d\n",(int)info->nz_unneeded,(int)A->info.nz_unneeded); */
16854e220ebcSLois Curfman McInnes   info->assemblies   = A->num_ass;
16864e220ebcSLois Curfman McInnes   info->mallocs      = a->reallocs;
16874e220ebcSLois Curfman McInnes   info->memory       = A->mem;
16884e220ebcSLois Curfman McInnes   if (A->factor) {
16894e220ebcSLois Curfman McInnes     info->fill_ratio_given  = A->info.fill_ratio_given;
16904e220ebcSLois Curfman McInnes     info->fill_ratio_needed = A->info.fill_ratio_needed;
16914e220ebcSLois Curfman McInnes     info->factor_mallocs    = A->info.factor_mallocs;
16924e220ebcSLois Curfman McInnes   } else {
16934e220ebcSLois Curfman McInnes     info->fill_ratio_given  = 0;
16944e220ebcSLois Curfman McInnes     info->fill_ratio_needed = 0;
16954e220ebcSLois Curfman McInnes     info->factor_mallocs    = 0;
16964e220ebcSLois Curfman McInnes   }
1697*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
16982593348eSBarry Smith }
16992593348eSBarry Smith 
17005615d1e5SSatish Balay #undef __FUNC__
17015615d1e5SSatish Balay #define __FUNC__ "MatEqual_SeqBAIJ"
17028f6be9afSLois Curfman McInnes int MatEqual_SeqBAIJ(Mat A,Mat B, PetscTruth* flg)
170391d316f6SSatish Balay {
170491d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
170591d316f6SSatish Balay 
1706*3a40ed3dSBarry Smith   PetscFunctionBegin;
1707e3372554SBarry Smith   if (B->type !=MATSEQBAIJ)SETERRQ(1,0,"Matrices must be same type");
170891d316f6SSatish Balay 
170991d316f6SSatish Balay   /* If the  matrix/block dimensions are not equal, or no of nonzeros or shift */
1710*3a40ed3dSBarry Smith   if ((a->m != b->m) || (a->n !=b->n) || (a->bs != b->bs)|| (a->nz != b->nz)) {
1711*3a40ed3dSBarry Smith     *flg = PETSC_FALSE; PetscFunctionReturn(0);
171291d316f6SSatish Balay   }
171391d316f6SSatish Balay 
171491d316f6SSatish Balay   /* if the a->i are the same */
171591d316f6SSatish Balay   if (PetscMemcmp(a->i,b->i, (a->mbs+1)*sizeof(int))) {
1716*3a40ed3dSBarry Smith     *flg = PETSC_FALSE; PetscFunctionReturn(0);
171791d316f6SSatish Balay   }
171891d316f6SSatish Balay 
171991d316f6SSatish Balay   /* if a->j are the same */
172091d316f6SSatish Balay   if (PetscMemcmp(a->j,b->j,(a->nz)*sizeof(int))) {
1721*3a40ed3dSBarry Smith     *flg = PETSC_FALSE; PetscFunctionReturn(0);
172291d316f6SSatish Balay   }
172391d316f6SSatish Balay 
172491d316f6SSatish Balay   /* if a->a are the same */
172591d316f6SSatish Balay   if (PetscMemcmp(a->a, b->a,(a->nz)*(a->bs)*(a->bs)*sizeof(Scalar))) {
1726*3a40ed3dSBarry Smith     *flg = PETSC_FALSE; PetscFunctionReturn(0);
172791d316f6SSatish Balay   }
172891d316f6SSatish Balay   *flg = PETSC_TRUE;
1729*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
173091d316f6SSatish Balay 
173191d316f6SSatish Balay }
173291d316f6SSatish Balay 
17335615d1e5SSatish Balay #undef __FUNC__
17345615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_SeqBAIJ"
17358f6be9afSLois Curfman McInnes int MatGetDiagonal_SeqBAIJ(Mat A,Vec v)
173691d316f6SSatish Balay {
173791d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
17387e67e3f9SSatish Balay   int         i,j,k,n,row,bs,*ai,*aj,ambs,bs2;
173917e48fc4SSatish Balay   Scalar      *x, zero = 0.0,*aa,*aa_j;
174017e48fc4SSatish Balay 
1741*3a40ed3dSBarry Smith   PetscFunctionBegin;
17420513a670SBarry Smith   if (A->factor) SETERRQ(1,0,"Not for factored matrix");
174317e48fc4SSatish Balay   bs   = a->bs;
174417e48fc4SSatish Balay   aa   = a->a;
174517e48fc4SSatish Balay   ai   = a->i;
174617e48fc4SSatish Balay   aj   = a->j;
174717e48fc4SSatish Balay   ambs = a->mbs;
17489df24120SSatish Balay   bs2  = a->bs2;
174991d316f6SSatish Balay 
175091d316f6SSatish Balay   VecSet(&zero,v);
175190f02eecSBarry Smith   VecGetArray_Fast(v,x); VecGetLocalSize_Fast(v,n);
1752e3372554SBarry Smith   if (n != a->m) SETERRQ(1,0,"Nonconforming matrix and vector");
175317e48fc4SSatish Balay   for ( i=0; i<ambs; i++ ) {
175417e48fc4SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
175517e48fc4SSatish Balay       if (aj[j] == i) {
175617e48fc4SSatish Balay         row  = i*bs;
17577e67e3f9SSatish Balay         aa_j = aa+j*bs2;
17587e67e3f9SSatish Balay         for (k=0; k<bs2; k+=(bs+1),row++) x[row] = aa_j[k];
175991d316f6SSatish Balay         break;
176091d316f6SSatish Balay       }
176191d316f6SSatish Balay     }
176291d316f6SSatish Balay   }
1763*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
176491d316f6SSatish Balay }
176591d316f6SSatish Balay 
17665615d1e5SSatish Balay #undef __FUNC__
17675615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_SeqBAIJ"
17688f6be9afSLois Curfman McInnes int MatDiagonalScale_SeqBAIJ(Mat A,Vec ll,Vec rr)
17699867e207SSatish Balay {
17709867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
17719867e207SSatish Balay   Scalar      *l,*r,x,*v,*aa,*li,*ri;
17727e67e3f9SSatish Balay   int         i,j,k,lm,rn,M,m,n,*ai,*aj,mbs,tmp,bs,bs2;
17739867e207SSatish Balay 
1774*3a40ed3dSBarry Smith   PetscFunctionBegin;
17759867e207SSatish Balay   ai  = a->i;
17769867e207SSatish Balay   aj  = a->j;
17779867e207SSatish Balay   aa  = a->a;
17789867e207SSatish Balay   m   = a->m;
17799867e207SSatish Balay   n   = a->n;
17809867e207SSatish Balay   bs  = a->bs;
17819867e207SSatish Balay   mbs = a->mbs;
17829df24120SSatish Balay   bs2 = a->bs2;
17839867e207SSatish Balay   if (ll) {
178490f02eecSBarry Smith     VecGetArray_Fast(ll,l); VecGetLocalSize_Fast(ll,lm);
1785e3372554SBarry Smith     if (lm != m) SETERRQ(1,0,"Left scaling vector wrong length");
17869867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
17879867e207SSatish Balay       M  = ai[i+1] - ai[i];
17889867e207SSatish Balay       li = l + i*bs;
17897e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
17909867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
17917e67e3f9SSatish Balay         for ( k=0; k<bs2; k++ ) {
17929867e207SSatish Balay           (*v++) *= li[k%bs];
17939867e207SSatish Balay         }
17949867e207SSatish Balay       }
17959867e207SSatish Balay     }
17969867e207SSatish Balay   }
17979867e207SSatish Balay 
17989867e207SSatish Balay   if (rr) {
179990f02eecSBarry Smith     VecGetArray_Fast(rr,r); VecGetLocalSize_Fast(rr,rn);
1800e3372554SBarry Smith     if (rn != n) SETERRQ(1,0,"Right scaling vector wrong length");
18019867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
18029867e207SSatish Balay       M  = ai[i+1] - ai[i];
18037e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
18049867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
18059867e207SSatish Balay         ri = r + bs*aj[ai[i]+j];
18069867e207SSatish Balay         for ( k=0; k<bs; k++ ) {
18079867e207SSatish Balay           x = ri[k];
18089867e207SSatish Balay           for ( tmp=0; tmp<bs; tmp++ ) (*v++) *= x;
18099867e207SSatish Balay         }
18109867e207SSatish Balay       }
18119867e207SSatish Balay     }
18129867e207SSatish Balay   }
1813*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
18149867e207SSatish Balay }
18159867e207SSatish Balay 
18169867e207SSatish Balay 
1817b6490206SBarry Smith extern int MatLUFactorSymbolic_SeqBAIJ(Mat,IS,IS,double,Mat*);
1818b6490206SBarry Smith extern int MatLUFactor_SeqBAIJ(Mat,IS,IS,double);
18192a38ea04SSatish Balay extern int MatIncreaseOverlap_SeqBAIJ(Mat,int,IS*,int);
1820736121d4SSatish Balay extern int MatGetSubMatrix_SeqBAIJ(Mat,IS,IS,MatGetSubMatrixCall,Mat*);
1821736121d4SSatish Balay extern int MatGetSubMatrices_SeqBAIJ(Mat,int,IS*,IS*,MatGetSubMatrixCall,Mat**);
18221a6a6d98SBarry Smith 
18231a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_N(Mat,Vec,Vec);
18241a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_1(Mat,Vec,Vec);
18251a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_2(Mat,Vec,Vec);
18261a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_3(Mat,Vec,Vec);
18271a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_4(Mat,Vec,Vec);
18281a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_5(Mat,Vec,Vec);
182948e9ddb2SSatish Balay extern int MatSolve_SeqBAIJ_7(Mat,Vec,Vec);
18301a6a6d98SBarry Smith 
18317fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_N(Mat,Mat*);
18327fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_1(Mat,Mat*);
18337fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_2(Mat,Mat*);
18347fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_3(Mat,Mat*);
18357fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_4(Mat,Mat*);
18367fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_5(Mat,Mat*);
18372593348eSBarry Smith 
18385615d1e5SSatish Balay #undef __FUNC__
18395615d1e5SSatish Balay #define __FUNC__ "MatNorm_SeqBAIJ"
18408f6be9afSLois Curfman McInnes int MatNorm_SeqBAIJ(Mat A,NormType type,double *norm)
18412593348eSBarry Smith {
1842b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
18432593348eSBarry Smith   Scalar      *v = a->a;
18442593348eSBarry Smith   double      sum = 0.0;
18459df24120SSatish Balay   int         i,nz=a->nz,bs2=a->bs2;
18462593348eSBarry Smith 
1847*3a40ed3dSBarry Smith   PetscFunctionBegin;
18482593348eSBarry Smith   if (type == NORM_FROBENIUS) {
18490419e6cdSSatish Balay     for (i=0; i< bs2*nz; i++ ) {
1850*3a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
18512593348eSBarry Smith       sum += real(conj(*v)*(*v)); v++;
18522593348eSBarry Smith #else
18532593348eSBarry Smith       sum += (*v)*(*v); v++;
18542593348eSBarry Smith #endif
18552593348eSBarry Smith     }
18562593348eSBarry Smith     *norm = sqrt(sum);
18572593348eSBarry Smith   }
18582593348eSBarry Smith   else {
1859e3372554SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
18602593348eSBarry Smith   }
1861*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
18622593348eSBarry Smith }
18632593348eSBarry Smith 
18643eee16b0SBarry Smith extern int MatSolve_SeqBAIJ_4_NaturalOrdering(Mat,Vec,Vec);
18652593348eSBarry Smith /*
18662593348eSBarry Smith      note: This can only work for identity for row and col. It would
18672593348eSBarry Smith    be good to check this and otherwise generate an error.
18682593348eSBarry Smith */
18695615d1e5SSatish Balay #undef __FUNC__
18705615d1e5SSatish Balay #define __FUNC__ "MatILUFactor_SeqBAIJ"
18718f6be9afSLois Curfman McInnes int MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,double efill,int fill)
18722593348eSBarry Smith {
1873b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
18742593348eSBarry Smith   Mat         outA;
1875de6a44a3SBarry Smith   int         ierr;
18762593348eSBarry Smith 
1877*3a40ed3dSBarry Smith   PetscFunctionBegin;
1878e3372554SBarry Smith   if (fill != 0) SETERRQ(1,0,"Only fill=0 supported");
18792593348eSBarry Smith 
18802593348eSBarry Smith   outA          = inA;
18812593348eSBarry Smith   inA->factor   = FACTOR_LU;
18822593348eSBarry Smith   a->row        = row;
18832593348eSBarry Smith   a->col        = col;
18842593348eSBarry Smith 
1885eed86810SBarry Smith   if (!a->solve_work) {
1886de6a44a3SBarry Smith     a->solve_work = (Scalar *) PetscMalloc((a->m+a->bs)*sizeof(Scalar));CHKPTRQ(a->solve_work);
1887eed86810SBarry Smith     PLogObjectMemory(inA,(a->m+a->bs)*sizeof(Scalar));
1888eed86810SBarry Smith   }
18892593348eSBarry Smith 
18902593348eSBarry Smith   if (!a->diag) {
1891b6490206SBarry Smith     ierr = MatMarkDiag_SeqBAIJ(inA); CHKERRQ(ierr);
18922593348eSBarry Smith   }
18937fc0212eSBarry Smith   ierr = MatLUFactorNumeric(inA,&outA); CHKERRQ(ierr);
18943eee16b0SBarry Smith 
18953eee16b0SBarry Smith   /*
18963eee16b0SBarry Smith       Blocksize 4 has a special faster solver for ILU(0) factorization
18973eee16b0SBarry Smith     with natural ordering
18983eee16b0SBarry Smith   */
18993eee16b0SBarry Smith   if (a->bs == 4) {
19003eee16b0SBarry Smith     inA->ops.solve = MatSolve_SeqBAIJ_4_NaturalOrdering;
19013eee16b0SBarry Smith   }
19023eee16b0SBarry Smith 
1903*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
19042593348eSBarry Smith }
19052593348eSBarry Smith 
19065615d1e5SSatish Balay #undef __FUNC__
19075615d1e5SSatish Balay #define __FUNC__ "MatScale_SeqBAIJ"
19088f6be9afSLois Curfman McInnes int MatScale_SeqBAIJ(Scalar *alpha,Mat inA)
19092593348eSBarry Smith {
1910b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
19119df24120SSatish Balay   int         one = 1, totalnz = a->bs2*a->nz;
1912*3a40ed3dSBarry Smith 
1913*3a40ed3dSBarry Smith   PetscFunctionBegin;
1914b6490206SBarry Smith   BLscal_( &totalnz, alpha, a->a, &one );
1915b6490206SBarry Smith   PLogFlops(totalnz);
1916*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
19172593348eSBarry Smith }
19182593348eSBarry Smith 
19195615d1e5SSatish Balay #undef __FUNC__
19205615d1e5SSatish Balay #define __FUNC__ "MatGetValues_SeqBAIJ"
19218f6be9afSLois Curfman McInnes int MatGetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v)
19227e67e3f9SSatish Balay {
19237e67e3f9SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
19247e67e3f9SSatish Balay   int        *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j;
1925a7c10996SSatish Balay   int        *ai = a->i, *ailen = a->ilen;
19269df24120SSatish Balay   int        brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2;
19277e67e3f9SSatish Balay   Scalar     *ap, *aa = a->a, zero = 0.0;
19287e67e3f9SSatish Balay 
1929*3a40ed3dSBarry Smith   PetscFunctionBegin;
19307e67e3f9SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over rows */
19317e67e3f9SSatish Balay     row  = im[k]; brow = row/bs;
1932e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
1933e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
1934a7c10996SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
19357e67e3f9SSatish Balay     nrow = ailen[brow];
19367e67e3f9SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over columns */
1937e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
1938e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
1939a7c10996SSatish Balay       col  = in[l] ;
19407e67e3f9SSatish Balay       bcol = col/bs;
19417e67e3f9SSatish Balay       cidx = col%bs;
19427e67e3f9SSatish Balay       ridx = row%bs;
19437e67e3f9SSatish Balay       high = nrow;
19447e67e3f9SSatish Balay       low  = 0; /* assume unsorted */
19457e67e3f9SSatish Balay       while (high-low > 5) {
19467e67e3f9SSatish Balay         t = (low+high)/2;
19477e67e3f9SSatish Balay         if (rp[t] > bcol) high = t;
19487e67e3f9SSatish Balay         else             low  = t;
19497e67e3f9SSatish Balay       }
19507e67e3f9SSatish Balay       for ( i=low; i<high; i++ ) {
19517e67e3f9SSatish Balay         if (rp[i] > bcol) break;
19527e67e3f9SSatish Balay         if (rp[i] == bcol) {
19537e67e3f9SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
19547e67e3f9SSatish Balay           goto finished;
19557e67e3f9SSatish Balay         }
19567e67e3f9SSatish Balay       }
19577e67e3f9SSatish Balay       *v++ = zero;
19587e67e3f9SSatish Balay       finished:;
19597e67e3f9SSatish Balay     }
19607e67e3f9SSatish Balay   }
1961*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
19627e67e3f9SSatish Balay }
19637e67e3f9SSatish Balay 
19645615d1e5SSatish Balay #undef __FUNC__
1965d4bb536fSBarry Smith #define __FUNC__ "MatGetBlockSize_SeqBAIJ"
19668f6be9afSLois Curfman McInnes int MatGetBlockSize_SeqBAIJ(Mat mat, int *bs)
19675a838052SSatish Balay {
19685a838052SSatish Balay   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *) mat->data;
1969*3a40ed3dSBarry Smith 
1970*3a40ed3dSBarry Smith   PetscFunctionBegin;
19715a838052SSatish Balay   *bs = baij->bs;
1972*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
19735a838052SSatish Balay }
19745a838052SSatish Balay 
1975d9b7c43dSSatish Balay /* idx should be of length atlease bs */
19765615d1e5SSatish Balay #undef __FUNC__
19775615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ_Check_Block"
1978d9b7c43dSSatish Balay static int MatZeroRows_SeqBAIJ_Check_Block(int *idx, int bs, PetscTruth *flg)
1979d9b7c43dSSatish Balay {
1980d9b7c43dSSatish Balay   int i,row;
1981*3a40ed3dSBarry Smith 
1982*3a40ed3dSBarry Smith   PetscFunctionBegin;
1983d9b7c43dSSatish Balay   row = idx[0];
1984*3a40ed3dSBarry Smith   if (row%bs!=0) { *flg = PETSC_FALSE; PetscFunctionReturn(0); }
1985d9b7c43dSSatish Balay 
1986d9b7c43dSSatish Balay   for ( i=1; i<bs; i++ ) {
1987*3a40ed3dSBarry Smith     if (row+i != idx[i]) { *flg = PETSC_FALSE; PetscFunctionReturn(0); }
1988d9b7c43dSSatish Balay   }
1989d9b7c43dSSatish Balay   *flg = PETSC_TRUE;
1990*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
1991d9b7c43dSSatish Balay }
1992d9b7c43dSSatish Balay 
19935615d1e5SSatish Balay #undef __FUNC__
19945615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ"
19958f6be9afSLois Curfman McInnes int MatZeroRows_SeqBAIJ(Mat A,IS is, Scalar *diag)
1996d9b7c43dSSatish Balay {
1997d9b7c43dSSatish Balay   Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data;
1998d9b7c43dSSatish Balay   IS          is_local;
1999d9b7c43dSSatish Balay   int         ierr,i,j,count,m=baij->m,is_n,*is_idx,*rows,bs=baij->bs,bs2=baij->bs2;
2000d9b7c43dSSatish Balay   PetscTruth  flg;
2001d9b7c43dSSatish Balay   Scalar      zero = 0.0,*aa;
2002d9b7c43dSSatish Balay 
2003*3a40ed3dSBarry Smith   PetscFunctionBegin;
2004d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2005d9b7c43dSSatish Balay   ierr = ISGetSize(is,&is_n);CHKERRQ(ierr);
2006d9b7c43dSSatish Balay   ierr = ISGetIndices(is,&is_idx);CHKERRQ(ierr);
2007537820f0SBarry Smith   ierr = ISCreateGeneral(A->comm,is_n,is_idx,&is_local); CHKERRQ(ierr);
2008d9b7c43dSSatish Balay   ierr = ISSort(is_local); CHKERRQ(ierr);
2009d9b7c43dSSatish Balay   ierr = ISGetIndices(is_local,&rows); CHKERRQ(ierr);
2010d9b7c43dSSatish Balay 
2011d9b7c43dSSatish Balay   i = 0;
2012d9b7c43dSSatish Balay   while (i < is_n) {
2013e3372554SBarry Smith     if (rows[i]<0 || rows[i]>m) SETERRQ(1,0,"row out of range");
2014d9b7c43dSSatish Balay     flg = PETSC_FALSE;
2015d9b7c43dSSatish Balay     if (i+bs <= is_n) {ierr = MatZeroRows_SeqBAIJ_Check_Block(rows+i,bs,&flg); CHKERRQ(ierr); }
2016d9b7c43dSSatish Balay     if (flg) { /* There exists a block of rows to be Zerowed */
2017d9b7c43dSSatish Balay       baij->ilen[rows[i]/bs] = 0;
2018d9b7c43dSSatish Balay       i += bs;
2019d9b7c43dSSatish Balay     } else { /* Zero out only the requested row */
2020d9b7c43dSSatish Balay       count = (baij->i[rows[i]/bs +1] - baij->i[rows[i]/bs])*bs;
2021d9b7c43dSSatish Balay       aa    = baij->a + baij->i[rows[i]/bs]*bs2 + (rows[i]%bs);
2022d9b7c43dSSatish Balay       for ( j=0; j<count; j++ ) {
2023d9b7c43dSSatish Balay         aa[0] = zero;
2024d9b7c43dSSatish Balay         aa+=bs;
2025d9b7c43dSSatish Balay       }
2026d9b7c43dSSatish Balay       i++;
2027d9b7c43dSSatish Balay     }
2028d9b7c43dSSatish Balay   }
2029d9b7c43dSSatish Balay   if (diag) {
2030d9b7c43dSSatish Balay     for ( j=0; j<is_n; j++ ) {
2031d9b7c43dSSatish Balay       ierr = (*A->ops.setvalues)(A,1,rows+j,1,rows+j,diag,INSERT_VALUES);CHKERRQ(ierr);
2032d9b7c43dSSatish Balay     }
2033d9b7c43dSSatish Balay   }
2034d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is,&is_idx); CHKERRQ(ierr);
2035d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is_local,&rows); CHKERRQ(ierr);
2036d9b7c43dSSatish Balay   ierr = ISDestroy(is_local); CHKERRQ(ierr);
20379a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
2038d9b7c43dSSatish Balay 
2039*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
2040d9b7c43dSSatish Balay }
20411c351548SSatish Balay 
20425615d1e5SSatish Balay #undef __FUNC__
2043d4bb536fSBarry Smith #define __FUNC__ "MatPrintHelp_SeqBAIJ"
2044ba4ca20aSSatish Balay int MatPrintHelp_SeqBAIJ(Mat A)
2045ba4ca20aSSatish Balay {
2046ba4ca20aSSatish Balay   static int called = 0;
2047ba4ca20aSSatish Balay   MPI_Comm   comm = A->comm;
2048ba4ca20aSSatish Balay 
2049*3a40ed3dSBarry Smith   PetscFunctionBegin;
2050*3a40ed3dSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = 1;
2051ba4ca20aSSatish Balay   PetscPrintf(comm," Options for MATSEQBAIJ and MATMPIBAIJ matrix formats (the defaults):\n");
2052ba4ca20aSSatish Balay   PetscPrintf(comm,"  -mat_block_size <block_size>\n");
2053*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
2054ba4ca20aSSatish Balay }
2055d9b7c43dSSatish Balay 
20562593348eSBarry Smith /* -------------------------------------------------------------------*/
2057cd0e1443SSatish Balay static struct _MatOps MatOps = {MatSetValues_SeqBAIJ,
20589867e207SSatish Balay        MatGetRow_SeqBAIJ,MatRestoreRow_SeqBAIJ,
2059f44d3a6dSSatish Balay        MatMult_SeqBAIJ_N,MatMultAdd_SeqBAIJ_N,
2060faf6580fSSatish Balay        MatMultTrans_SeqBAIJ,MatMultTransAdd_SeqBAIJ,
20611a6a6d98SBarry Smith        MatSolve_SeqBAIJ_N,0,
2062b6490206SBarry Smith        0,0,
2063de6a44a3SBarry Smith        MatLUFactor_SeqBAIJ,0,
2064b6490206SBarry Smith        0,
2065f2501298SSatish Balay        MatTranspose_SeqBAIJ,
206617e48fc4SSatish Balay        MatGetInfo_SeqBAIJ,MatEqual_SeqBAIJ,
20679867e207SSatish Balay        MatGetDiagonal_SeqBAIJ,MatDiagonalScale_SeqBAIJ,MatNorm_SeqBAIJ,
2068584200bdSSatish Balay        0,MatAssemblyEnd_SeqBAIJ,
2069b6490206SBarry Smith        0,
2070d9b7c43dSSatish Balay        MatSetOption_SeqBAIJ,MatZeroEntries_SeqBAIJ,MatZeroRows_SeqBAIJ,
20717fc0212eSBarry Smith        MatLUFactorSymbolic_SeqBAIJ,MatLUFactorNumeric_SeqBAIJ_N,0,0,
2072b6490206SBarry Smith        MatGetSize_SeqBAIJ,MatGetSize_SeqBAIJ,MatGetOwnershipRange_SeqBAIJ,
2073de6a44a3SBarry Smith        MatILUFactorSymbolic_SeqBAIJ,0,
2074d402145bSBarry Smith        0,0,
2075b6490206SBarry Smith        MatConvertSameType_SeqBAIJ,0,0,
2076b6490206SBarry Smith        MatILUFactor_SeqBAIJ,0,0,
2077af015674SSatish Balay        MatGetSubMatrices_SeqBAIJ,MatIncreaseOverlap_SeqBAIJ,
20787e67e3f9SSatish Balay        MatGetValues_SeqBAIJ,0,
2079ba4ca20aSSatish Balay        MatPrintHelp_SeqBAIJ,MatScale_SeqBAIJ,
20803b2fbd54SBarry Smith        0,0,0,MatGetBlockSize_SeqBAIJ,
20813b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
208292c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
208392c4ed94SBarry Smith        0,0,0,0,0,0,
208492c4ed94SBarry Smith        MatSetValuesBlocked_SeqBAIJ};
20852593348eSBarry Smith 
20865615d1e5SSatish Balay #undef __FUNC__
20875615d1e5SSatish Balay #define __FUNC__ "MatCreateSeqBAIJ"
20882593348eSBarry Smith /*@C
208944cd7ae7SLois Curfman McInnes    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
209044cd7ae7SLois Curfman McInnes    compressed row) format.  For good matrix assembly performance the
209144cd7ae7SLois Curfman McInnes    user should preallocate the matrix storage by setting the parameter nz
20922bd5e0b2SLois Curfman McInnes    (or the array nzz).  By setting these parameters accurately, performance
20932bd5e0b2SLois Curfman McInnes    during matrix assembly can be increased by more than a factor of 50.
20942593348eSBarry Smith 
20952593348eSBarry Smith    Input Parameters:
2096029af93fSBarry Smith .  comm - MPI communicator, set to PETSC_COMM_SELF
2097b6490206SBarry Smith .  bs - size of block
20982593348eSBarry Smith .  m - number of rows
20992593348eSBarry Smith .  n - number of columns
2100b6490206SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
21012bd5e0b2SLois Curfman McInnes .  nzz - array containing the number of block nonzeros in the various block rows
21022bd5e0b2SLois Curfman McInnes          (possibly different for each block row) or PETSC_NULL
21032593348eSBarry Smith 
21042593348eSBarry Smith    Output Parameter:
21052593348eSBarry Smith .  A - the matrix
21062593348eSBarry Smith 
21070513a670SBarry Smith    Options Database Keys:
21080513a670SBarry Smith $    -mat_no_unroll - uses code that does not unroll the loops in the
21090effe34fSLois Curfman McInnes $                     block calculations (much slower)
21100513a670SBarry Smith $    -mat_block_size - size of the blocks to use
21110513a670SBarry Smith 
21122593348eSBarry Smith    Notes:
211344cd7ae7SLois Curfman McInnes    The block AIJ format is fully compatible with standard Fortran 77
21142593348eSBarry Smith    storage.  That is, the stored row and column indices can begin at
211544cd7ae7SLois Curfman McInnes    either one (as in Fortran) or zero.  See the users' manual for details.
21162593348eSBarry Smith 
21172593348eSBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
21182593348eSBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
21192593348eSBarry Smith    allocation.  For additional details, see the users manual chapter on
21206da5968aSLois Curfman McInnes    matrices.
21212593348eSBarry Smith 
212244cd7ae7SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
21232593348eSBarry Smith @*/
2124b6490206SBarry Smith int MatCreateSeqBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,int *nnz, Mat *A)
21252593348eSBarry Smith {
21262593348eSBarry Smith   Mat         B;
2127b6490206SBarry Smith   Mat_SeqBAIJ *b;
21283b2fbd54SBarry Smith   int         i,len,ierr,flg,mbs=m/bs,nbs=n/bs,bs2=bs*bs,size;
21293b2fbd54SBarry Smith 
2130*3a40ed3dSBarry Smith   PetscFunctionBegin;
21313b2fbd54SBarry Smith   MPI_Comm_size(comm,&size);
2132e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"Comm must be of size 1");
2133b6490206SBarry Smith 
21340513a670SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,&flg);CHKERRQ(ierr);
21350513a670SBarry Smith 
2136*3a40ed3dSBarry Smith   if (mbs*bs!=m || nbs*bs!=n) {
2137e3372554SBarry Smith     SETERRQ(1,0,"Number rows, cols must be divisible by blocksize");
2138*3a40ed3dSBarry Smith   }
21392593348eSBarry Smith 
21402593348eSBarry Smith   *A = 0;
2141d4bb536fSBarry Smith   PetscHeaderCreate(B,_p_Mat,MAT_COOKIE,MATSEQBAIJ,comm,MatDestroy,MatView);
21422593348eSBarry Smith   PLogObjectCreate(B);
2143b6490206SBarry Smith   B->data = (void *) (b = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(b);
214444cd7ae7SLois Curfman McInnes   PetscMemzero(b,sizeof(Mat_SeqBAIJ));
21452593348eSBarry Smith   PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps));
21461a6a6d98SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_no_unroll",&flg); CHKERRQ(ierr);
21471a6a6d98SBarry Smith   if (!flg) {
21487fc0212eSBarry Smith     switch (bs) {
21497fc0212eSBarry Smith     case 1:
21507fc0212eSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1;
21511a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_1;
215239b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_1;
2153f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_1;
21547fc0212eSBarry Smith       break;
21554eeb42bcSBarry Smith     case 2:
21564eeb42bcSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2;
21571a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_2;
215839b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_2;
2159f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_2;
21606d84be18SBarry Smith       break;
2161f327dd97SBarry Smith     case 3:
2162f327dd97SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3;
21631a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_3;
216439b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_3;
2165f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_3;
21664eeb42bcSBarry Smith       break;
21676d84be18SBarry Smith     case 4:
21686d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4;
21691a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_4;
217039b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_4;
2171f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_4;
21726d84be18SBarry Smith       break;
21736d84be18SBarry Smith     case 5:
21746d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5;
21751a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_5;
217639b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_5;
2177f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_5;
21786d84be18SBarry Smith       break;
217948e9ddb2SSatish Balay     case 7:
218048e9ddb2SSatish Balay       B->ops.mult            = MatMult_SeqBAIJ_7;
218148e9ddb2SSatish Balay       B->ops.solve           = MatSolve_SeqBAIJ_7;
218248e9ddb2SSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_7;
218348e9ddb2SSatish Balay       break;
21847fc0212eSBarry Smith     }
21851a6a6d98SBarry Smith   }
2186b6490206SBarry Smith   B->destroy          = MatDestroy_SeqBAIJ;
2187b6490206SBarry Smith   B->view             = MatView_SeqBAIJ;
21882593348eSBarry Smith   B->factor           = 0;
21892593348eSBarry Smith   B->lupivotthreshold = 1.0;
219090f02eecSBarry Smith   B->mapping          = 0;
21912593348eSBarry Smith   b->row              = 0;
21922593348eSBarry Smith   b->col              = 0;
21932593348eSBarry Smith   b->reallocs         = 0;
21942593348eSBarry Smith 
219544cd7ae7SLois Curfman McInnes   b->m       = m; B->m = m; B->M = m;
219644cd7ae7SLois Curfman McInnes   b->n       = n; B->n = n; B->N = n;
2197b6490206SBarry Smith   b->mbs     = mbs;
2198f2501298SSatish Balay   b->nbs     = nbs;
2199b6490206SBarry Smith   b->imax    = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(b->imax);
22002593348eSBarry Smith   if (nnz == PETSC_NULL) {
2201119a934aSSatish Balay     if (nz == PETSC_DEFAULT) nz = 5;
22022593348eSBarry Smith     else if (nz <= 0)        nz = 1;
2203b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) b->imax[i] = nz;
2204b6490206SBarry Smith     nz = nz*mbs;
2205*3a40ed3dSBarry Smith   } else {
22062593348eSBarry Smith     nz = 0;
2207b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {b->imax[i] = nnz[i]; nz += nnz[i];}
22082593348eSBarry Smith   }
22092593348eSBarry Smith 
22102593348eSBarry Smith   /* allocate the matrix space */
22117e67e3f9SSatish Balay   len   = nz*sizeof(int) + nz*bs2*sizeof(Scalar) + (b->m+1)*sizeof(int);
22122593348eSBarry Smith   b->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(b->a);
22137e67e3f9SSatish Balay   PetscMemzero(b->a,nz*bs2*sizeof(Scalar));
22147e67e3f9SSatish Balay   b->j  = (int *) (b->a + nz*bs2);
22152593348eSBarry Smith   PetscMemzero(b->j,nz*sizeof(int));
22162593348eSBarry Smith   b->i  = b->j + nz;
22172593348eSBarry Smith   b->singlemalloc = 1;
22182593348eSBarry Smith 
2219de6a44a3SBarry Smith   b->i[0] = 0;
2220b6490206SBarry Smith   for (i=1; i<mbs+1; i++) {
22212593348eSBarry Smith     b->i[i] = b->i[i-1] + b->imax[i-1];
22222593348eSBarry Smith   }
22232593348eSBarry Smith 
2224b6490206SBarry Smith   /* b->ilen will count nonzeros in each block row so far. */
2225b6490206SBarry Smith   b->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int));
2226f09e8eb9SSatish Balay   PLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqBAIJ));
2227b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) { b->ilen[i] = 0;}
22282593348eSBarry Smith 
2229b6490206SBarry Smith   b->bs               = bs;
22309df24120SSatish Balay   b->bs2              = bs2;
2231b6490206SBarry Smith   b->mbs              = mbs;
22322593348eSBarry Smith   b->nz               = 0;
223318e7b8e4SLois Curfman McInnes   b->maxnz            = nz*bs2;
22342593348eSBarry Smith   b->sorted           = 0;
22352593348eSBarry Smith   b->roworiented      = 1;
22362593348eSBarry Smith   b->nonew            = 0;
22372593348eSBarry Smith   b->diag             = 0;
22382593348eSBarry Smith   b->solve_work       = 0;
2239de6a44a3SBarry Smith   b->mult_work        = 0;
22402593348eSBarry Smith   b->spptr            = 0;
22414e220ebcSLois Curfman McInnes   B->info.nz_unneeded = (double)b->maxnz;
22424e220ebcSLois Curfman McInnes 
22432593348eSBarry Smith   *A = B;
22442593348eSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help", &flg); CHKERRQ(ierr);
22452593348eSBarry Smith   if (flg) {ierr = MatPrintHelp(B); CHKERRQ(ierr); }
2246*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
22472593348eSBarry Smith }
22482593348eSBarry Smith 
22495615d1e5SSatish Balay #undef __FUNC__
22505615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_SeqBAIJ"
2251b6490206SBarry Smith int MatConvertSameType_SeqBAIJ(Mat A,Mat *B,int cpvalues)
22522593348eSBarry Smith {
22532593348eSBarry Smith   Mat         C;
2254b6490206SBarry Smith   Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ *) A->data;
22559df24120SSatish Balay   int         i,len, mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
2256de6a44a3SBarry Smith 
2257*3a40ed3dSBarry Smith   PetscFunctionBegin;
2258e3372554SBarry Smith   if (a->i[mbs] != nz) SETERRQ(1,0,"Corrupt matrix");
22592593348eSBarry Smith 
22602593348eSBarry Smith   *B = 0;
2261d4bb536fSBarry Smith   PetscHeaderCreate(C,_p_Mat,MAT_COOKIE,MATSEQBAIJ,A->comm,MatDestroy,MatView);
22622593348eSBarry Smith   PLogObjectCreate(C);
2263b6490206SBarry Smith   C->data       = (void *) (c = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(c);
22642593348eSBarry Smith   PetscMemcpy(&C->ops,&A->ops,sizeof(struct _MatOps));
2265b6490206SBarry Smith   C->destroy    = MatDestroy_SeqBAIJ;
2266b6490206SBarry Smith   C->view       = MatView_SeqBAIJ;
22672593348eSBarry Smith   C->factor     = A->factor;
22682593348eSBarry Smith   c->row        = 0;
22692593348eSBarry Smith   c->col        = 0;
22702593348eSBarry Smith   C->assembled  = PETSC_TRUE;
22712593348eSBarry Smith 
227244cd7ae7SLois Curfman McInnes   c->m = C->m   = a->m;
227344cd7ae7SLois Curfman McInnes   c->n = C->n   = a->n;
227444cd7ae7SLois Curfman McInnes   C->M          = a->m;
227544cd7ae7SLois Curfman McInnes   C->N          = a->n;
227644cd7ae7SLois Curfman McInnes 
2277b6490206SBarry Smith   c->bs         = a->bs;
22789df24120SSatish Balay   c->bs2        = a->bs2;
2279b6490206SBarry Smith   c->mbs        = a->mbs;
2280b6490206SBarry Smith   c->nbs        = a->nbs;
22812593348eSBarry Smith 
2282b6490206SBarry Smith   c->imax       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->imax);
2283b6490206SBarry Smith   c->ilen       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->ilen);
2284b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
22852593348eSBarry Smith     c->imax[i] = a->imax[i];
22862593348eSBarry Smith     c->ilen[i] = a->ilen[i];
22872593348eSBarry Smith   }
22882593348eSBarry Smith 
22892593348eSBarry Smith   /* allocate the matrix space */
22902593348eSBarry Smith   c->singlemalloc = 1;
22917e67e3f9SSatish Balay   len   = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(Scalar) + sizeof(int));
22922593348eSBarry Smith   c->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(c->a);
22937e67e3f9SSatish Balay   c->j  = (int *) (c->a + nz*bs2);
2294de6a44a3SBarry Smith   c->i  = c->j + nz;
2295b6490206SBarry Smith   PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int));
2296b6490206SBarry Smith   if (mbs > 0) {
2297de6a44a3SBarry Smith     PetscMemcpy(c->j,a->j,nz*sizeof(int));
22982593348eSBarry Smith     if (cpvalues == COPY_VALUES) {
22997e67e3f9SSatish Balay       PetscMemcpy(c->a,a->a,bs2*nz*sizeof(Scalar));
23002593348eSBarry Smith     }
23012593348eSBarry Smith   }
23022593348eSBarry Smith 
2303f09e8eb9SSatish Balay   PLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqBAIJ));
23042593348eSBarry Smith   c->sorted      = a->sorted;
23052593348eSBarry Smith   c->roworiented = a->roworiented;
23062593348eSBarry Smith   c->nonew       = a->nonew;
23072593348eSBarry Smith 
23082593348eSBarry Smith   if (a->diag) {
2309b6490206SBarry Smith     c->diag = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(c->diag);
2310b6490206SBarry Smith     PLogObjectMemory(C,(mbs+1)*sizeof(int));
2311b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {
23122593348eSBarry Smith       c->diag[i] = a->diag[i];
23132593348eSBarry Smith     }
23142593348eSBarry Smith   }
23152593348eSBarry Smith   else c->diag          = 0;
23162593348eSBarry Smith   c->nz                 = a->nz;
23172593348eSBarry Smith   c->maxnz              = a->maxnz;
23182593348eSBarry Smith   c->solve_work         = 0;
23192593348eSBarry Smith   c->spptr              = 0;      /* Dangerous -I'm throwing away a->spptr */
23207fc0212eSBarry Smith   c->mult_work          = 0;
23212593348eSBarry Smith   *B = C;
2322*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
23232593348eSBarry Smith }
23242593348eSBarry Smith 
23255615d1e5SSatish Balay #undef __FUNC__
23265615d1e5SSatish Balay #define __FUNC__ "MatLoad_SeqBAIJ"
232719bcc07fSBarry Smith int MatLoad_SeqBAIJ(Viewer viewer,MatType type,Mat *A)
23282593348eSBarry Smith {
2329b6490206SBarry Smith   Mat_SeqBAIJ  *a;
23302593348eSBarry Smith   Mat          B;
2331de6a44a3SBarry Smith   int          i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1,flg;
2332b6490206SBarry Smith   int          *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
233335aab85fSBarry Smith   int          kmax,jcount,block,idx,point,nzcountb,extra_rows;
2334a7c10996SSatish Balay   int          *masked, nmask,tmp,bs2,ishift;
2335b6490206SBarry Smith   Scalar       *aa;
233619bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject) viewer)->comm;
23372593348eSBarry Smith 
2338*3a40ed3dSBarry Smith   PetscFunctionBegin;
23391a6a6d98SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
2340de6a44a3SBarry Smith   bs2  = bs*bs;
2341b6490206SBarry Smith 
23422593348eSBarry Smith   MPI_Comm_size(comm,&size);
2343e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"view must have one processor");
234490ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
23450752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT); CHKERRQ(ierr);
2346e3372554SBarry Smith   if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not Mat object");
23472593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
23482593348eSBarry Smith 
2349e3372554SBarry Smith   if (M != N) SETERRQ(1,0,"Can only do square matrices");
235035aab85fSBarry Smith 
235135aab85fSBarry Smith   /*
235235aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
235335aab85fSBarry Smith     divisible by the blocksize
235435aab85fSBarry Smith   */
2355b6490206SBarry Smith   mbs        = M/bs;
235635aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
235735aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
235835aab85fSBarry Smith   else                  mbs++;
235935aab85fSBarry Smith   if (extra_rows) {
2360537820f0SBarry Smith     PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize\n");
236135aab85fSBarry Smith   }
2362b6490206SBarry Smith 
23632593348eSBarry Smith   /* read in row lengths */
236435aab85fSBarry Smith   rowlengths = (int*) PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths);
23650752156aSBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr);
236635aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
23672593348eSBarry Smith 
2368b6490206SBarry Smith   /* read in column indices */
236935aab85fSBarry Smith   jj = (int*) PetscMalloc( (nz+extra_rows)*sizeof(int) ); CHKPTRQ(jj);
23700752156aSBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT); CHKERRQ(ierr);
237135aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) jj[nz+i] = M+i;
2372b6490206SBarry Smith 
2373b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
2374b6490206SBarry Smith   browlengths = (int *) PetscMalloc(mbs*sizeof(int));CHKPTRQ(browlengths);
2375b6490206SBarry Smith   PetscMemzero(browlengths,mbs*sizeof(int));
237635aab85fSBarry Smith   mask   = (int *) PetscMalloc( 2*mbs*sizeof(int) ); CHKPTRQ(mask);
237735aab85fSBarry Smith   PetscMemzero(mask,mbs*sizeof(int));
237835aab85fSBarry Smith   masked = mask + mbs;
2379b6490206SBarry Smith   rowcount = 0; nzcount = 0;
2380b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
238135aab85fSBarry Smith     nmask = 0;
2382b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2383b6490206SBarry Smith       kmax = rowlengths[rowcount];
2384b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
238535aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
238635aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
2387b6490206SBarry Smith       }
2388b6490206SBarry Smith       rowcount++;
2389b6490206SBarry Smith     }
239035aab85fSBarry Smith     browlengths[i] += nmask;
239135aab85fSBarry Smith     /* zero out the mask elements we set */
239235aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2393b6490206SBarry Smith   }
2394b6490206SBarry Smith 
23952593348eSBarry Smith   /* create our matrix */
23963eee16b0SBarry Smith   ierr = MatCreateSeqBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,browlengths,A);CHKERRQ(ierr);
23972593348eSBarry Smith   B = *A;
2398b6490206SBarry Smith   a = (Mat_SeqBAIJ *) B->data;
23992593348eSBarry Smith 
24002593348eSBarry Smith   /* set matrix "i" values */
2401de6a44a3SBarry Smith   a->i[0] = 0;
2402b6490206SBarry Smith   for ( i=1; i<= mbs; i++ ) {
2403b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
2404b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
24052593348eSBarry Smith   }
2406b6490206SBarry Smith   a->nz         = 0;
2407b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) a->nz += browlengths[i];
24082593348eSBarry Smith 
2409b6490206SBarry Smith   /* read in nonzero values */
241035aab85fSBarry Smith   aa = (Scalar *) PetscMalloc((nz+extra_rows)*sizeof(Scalar));CHKPTRQ(aa);
24110752156aSBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR); CHKERRQ(ierr);
241235aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) aa[nz+i] = 1.0;
2413b6490206SBarry Smith 
2414b6490206SBarry Smith   /* set "a" and "j" values into matrix */
2415b6490206SBarry Smith   nzcount = 0; jcount = 0;
2416b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
2417b6490206SBarry Smith     nzcountb = nzcount;
241835aab85fSBarry Smith     nmask    = 0;
2419b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2420b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2421b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
242235aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
242335aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
2424b6490206SBarry Smith       }
2425b6490206SBarry Smith       rowcount++;
2426b6490206SBarry Smith     }
2427de6a44a3SBarry Smith     /* sort the masked values */
242877c4ece6SBarry Smith     PetscSortInt(nmask,masked);
2429de6a44a3SBarry Smith 
2430b6490206SBarry Smith     /* set "j" values into matrix */
2431b6490206SBarry Smith     maskcount = 1;
243235aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) {
243335aab85fSBarry Smith       a->j[jcount++]  = masked[j];
2434de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
2435b6490206SBarry Smith     }
2436b6490206SBarry Smith     /* set "a" values into matrix */
2437de6a44a3SBarry Smith     ishift = bs2*a->i[i];
2438b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2439b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2440b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
2441de6a44a3SBarry Smith         tmp    = jj[nzcountb]/bs ;
2442de6a44a3SBarry Smith         block  = mask[tmp] - 1;
2443de6a44a3SBarry Smith         point  = jj[nzcountb] - bs*tmp;
2444de6a44a3SBarry Smith         idx    = ishift + bs2*block + j + bs*point;
2445b6490206SBarry Smith         a->a[idx] = aa[nzcountb++];
2446b6490206SBarry Smith       }
2447b6490206SBarry Smith     }
244835aab85fSBarry Smith     /* zero out the mask elements we set */
244935aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2450b6490206SBarry Smith   }
2451e3372554SBarry Smith   if (jcount != a->nz) SETERRQ(1,0,"Error bad binary matrix");
2452b6490206SBarry Smith 
2453b6490206SBarry Smith   PetscFree(rowlengths);
2454b6490206SBarry Smith   PetscFree(browlengths);
2455b6490206SBarry Smith   PetscFree(aa);
2456b6490206SBarry Smith   PetscFree(jj);
2457b6490206SBarry Smith   PetscFree(mask);
2458b6490206SBarry Smith 
2459b6490206SBarry Smith   B->assembled = PETSC_TRUE;
2460de6a44a3SBarry Smith 
24619c01be13SBarry Smith   ierr = MatView_Private(B); CHKERRQ(ierr);
2462*3a40ed3dSBarry Smith   PetscFunctionReturn(0);
24632593348eSBarry Smith }
24642593348eSBarry Smith 
24652593348eSBarry Smith 
24662593348eSBarry Smith 
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