12593348eSBarry Smith /* 2b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 32593348eSBarry Smith matrix storage format. 42593348eSBarry Smith */ 5c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 6c6db04a5SJed Brown #include <petscblaslapack.h> 7af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h> 8af0996ceSBarry Smith #include <petsc/private/kernels/blockmatmult.h> 943516a2dSKris Buschelman 1026cec326SBarry Smith /* defines MatSetValues_Seq_Hash(), MatAssemblyEnd_Seq_Hash(), MatSetUp_Seq_Hash() */ 1126cec326SBarry Smith #define TYPE BAIJ 1226cec326SBarry Smith #define TYPE_BS 1326cec326SBarry Smith #include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h" 1426cec326SBarry Smith #undef TYPE_BS 1526cec326SBarry Smith #define TYPE_BS _BS 1626cec326SBarry Smith #define TYPE_BS_ON 1726cec326SBarry Smith #include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h" 1826cec326SBarry Smith #undef TYPE_BS 1926cec326SBarry Smith #include "../src/mat/impls/aij/seq/seqhashmat.h" 2026cec326SBarry Smith #undef TYPE 2126cec326SBarry Smith #undef TYPE_BS_ON 2226cec326SBarry Smith 237ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 247ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 257ea3e4caSstefano_zampini #endif 267ea3e4caSstefano_zampini 27b5b72c8aSIrina Sokolova #if defined(PETSC_HAVE_MKL_SPARSE_OPTIMIZE) 28fd9d3c67SJed Brown PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBAIJMKL(Mat, MatType, MatReuse, Mat *); 29b5b72c8aSIrina Sokolova #endif 30c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 31b5b72c8aSIrina Sokolova 32ff6a9541SJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_SeqBAIJ(Mat A, PetscInt type, PetscReal *reductions) 33d71ae5a4SJacob Faibussowitsch { 349463ebdaSPierre Jolivet Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)A->data; 35ff6a9541SJacob Faibussowitsch PetscInt m, n, ib, jb, bs = A->rmap->bs; 369463ebdaSPierre Jolivet MatScalar *a_val = a_aij->a; 379463ebdaSPierre Jolivet 389463ebdaSPierre Jolivet PetscFunctionBegin; 399566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 40ff6a9541SJacob Faibussowitsch PetscCall(PetscArrayzero(reductions, n)); 419463ebdaSPierre Jolivet if (type == NORM_2) { 42ff6a9541SJacob Faibussowitsch for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) { 439463ebdaSPierre Jolivet for (jb = 0; jb < bs; jb++) { 449463ebdaSPierre Jolivet for (ib = 0; ib < bs; ib++) { 45857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 469463ebdaSPierre Jolivet a_val++; 479463ebdaSPierre Jolivet } 489463ebdaSPierre Jolivet } 499463ebdaSPierre Jolivet } 509463ebdaSPierre Jolivet } else if (type == NORM_1) { 51ff6a9541SJacob Faibussowitsch for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) { 529463ebdaSPierre Jolivet for (jb = 0; jb < bs; jb++) { 539463ebdaSPierre Jolivet for (ib = 0; ib < bs; ib++) { 54857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 559463ebdaSPierre Jolivet a_val++; 569463ebdaSPierre Jolivet } 579463ebdaSPierre Jolivet } 589463ebdaSPierre Jolivet } 599463ebdaSPierre Jolivet } else if (type == NORM_INFINITY) { 60ff6a9541SJacob Faibussowitsch for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) { 619463ebdaSPierre Jolivet for (jb = 0; jb < bs; jb++) { 629463ebdaSPierre Jolivet for (ib = 0; ib < bs; ib++) { 639463ebdaSPierre Jolivet int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 64857cbf51SRichard Tran Mills reductions[col] = PetscMax(PetscAbsScalar(*a_val), reductions[col]); 659463ebdaSPierre Jolivet a_val++; 669463ebdaSPierre Jolivet } 679463ebdaSPierre Jolivet } 689463ebdaSPierre Jolivet } 69857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 70ff6a9541SJacob Faibussowitsch for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) { 71857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 72857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 73857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 74857cbf51SRichard Tran Mills a_val++; 75857cbf51SRichard Tran Mills } 76857cbf51SRichard Tran Mills } 77857cbf51SRichard Tran Mills } 78857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 79ff6a9541SJacob Faibussowitsch for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) { 80857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 81857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 82857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 83857cbf51SRichard Tran Mills a_val++; 84857cbf51SRichard Tran Mills } 85857cbf51SRichard Tran Mills } 86857cbf51SRichard Tran Mills } 87857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 889463ebdaSPierre Jolivet if (type == NORM_2) { 89ff6a9541SJacob Faibussowitsch for (PetscInt i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 90857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 91ff6a9541SJacob Faibussowitsch for (PetscInt i = 0; i < n; i++) reductions[i] /= m; 929463ebdaSPierre Jolivet } 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 949463ebdaSPierre Jolivet } 959463ebdaSPierre Jolivet 9666976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_SeqBAIJ(Mat A, const PetscScalar **values) 97d71ae5a4SJacob Faibussowitsch { 98b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 99de80f912SBarry Smith PetscInt *diag_offset, i, bs = A->rmap->bs, mbs = a->mbs, ipvt[5], bs2 = bs * bs, *v_pivots; 1007f0c90edSBarry Smith MatScalar *v = a->a, *odiag, *diag, work[25], *v_work; 10162bba022SBarry Smith PetscReal shift = 0.0; 1021a9391e3SHong Zhang PetscBool allowzeropivot, zeropivotdetected = PETSC_FALSE; 103b01c7715SBarry Smith 104b01c7715SBarry Smith PetscFunctionBegin; 105a455e926SHong Zhang allowzeropivot = PetscNot(A->erroriffailure); 106a455e926SHong Zhang 1079797317bSBarry Smith if (a->idiagvalid) { 1089797317bSBarry Smith if (values) *values = a->idiag; 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1109797317bSBarry Smith } 1119566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqBAIJ(A)); 112b01c7715SBarry Smith diag_offset = a->diag; 1134dfa11a4SJacob Faibussowitsch if (!a->idiag) { PetscCall(PetscMalloc1(bs2 * mbs, &a->idiag)); } 114b01c7715SBarry Smith diag = a->idiag; 115bbead8a2SBarry Smith if (values) *values = a->idiag; 116b01c7715SBarry Smith /* factor and invert each block */ 117521d7252SBarry Smith switch (bs) { 118ab040260SJed Brown case 1: 119ab040260SJed Brown for (i = 0; i < mbs; i++) { 120ab040260SJed Brown odiag = v + 1 * diag_offset[i]; 121ab040260SJed Brown diag[0] = odiag[0]; 122ec1892c8SHong Zhang 123ec1892c8SHong Zhang if (PetscAbsScalar(diag[0] + shift) < PETSC_MACHINE_EPSILON) { 124ec1892c8SHong Zhang if (allowzeropivot) { 1257b6c816cSBarry Smith A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 1267b6c816cSBarry Smith A->factorerror_zeropivot_value = PetscAbsScalar(diag[0]); 1277b6c816cSBarry Smith A->factorerror_zeropivot_row = i; 1289566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Zero pivot, row %" PetscInt_FMT "\n", i)); 12998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_MAT_LU_ZRPVT, "Zero pivot, row %" PetscInt_FMT " pivot value %g tolerance %g", i, (double)PetscAbsScalar(diag[0]), (double)PETSC_MACHINE_EPSILON); 130ec1892c8SHong Zhang } 131ec1892c8SHong Zhang 132d4a378daSJed Brown diag[0] = (PetscScalar)1.0 / (diag[0] + shift); 133ab040260SJed Brown diag += 1; 134ab040260SJed Brown } 135ab040260SJed Brown break; 136b01c7715SBarry Smith case 2: 137b01c7715SBarry Smith for (i = 0; i < mbs; i++) { 138b01c7715SBarry Smith odiag = v + 4 * diag_offset[i]; 1399371c9d4SSatish Balay diag[0] = odiag[0]; 1409371c9d4SSatish Balay diag[1] = odiag[1]; 1419371c9d4SSatish Balay diag[2] = odiag[2]; 1429371c9d4SSatish Balay diag[3] = odiag[3]; 1439566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_2(diag, shift, allowzeropivot, &zeropivotdetected)); 1447b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 145b01c7715SBarry Smith diag += 4; 146b01c7715SBarry Smith } 147b01c7715SBarry Smith break; 148b01c7715SBarry Smith case 3: 149b01c7715SBarry Smith for (i = 0; i < mbs; i++) { 150b01c7715SBarry Smith odiag = v + 9 * diag_offset[i]; 1519371c9d4SSatish Balay diag[0] = odiag[0]; 1529371c9d4SSatish Balay diag[1] = odiag[1]; 1539371c9d4SSatish Balay diag[2] = odiag[2]; 1549371c9d4SSatish Balay diag[3] = odiag[3]; 1559371c9d4SSatish Balay diag[4] = odiag[4]; 1569371c9d4SSatish Balay diag[5] = odiag[5]; 1579371c9d4SSatish Balay diag[6] = odiag[6]; 1589371c9d4SSatish Balay diag[7] = odiag[7]; 159b01c7715SBarry Smith diag[8] = odiag[8]; 1609566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_3(diag, shift, allowzeropivot, &zeropivotdetected)); 1617b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 162b01c7715SBarry Smith diag += 9; 163b01c7715SBarry Smith } 164b01c7715SBarry Smith break; 165b01c7715SBarry Smith case 4: 166b01c7715SBarry Smith for (i = 0; i < mbs; i++) { 167b01c7715SBarry Smith odiag = v + 16 * diag_offset[i]; 1689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag, odiag, 16)); 1699566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_4(diag, shift, allowzeropivot, &zeropivotdetected)); 1707b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 171b01c7715SBarry Smith diag += 16; 172b01c7715SBarry Smith } 173b01c7715SBarry Smith break; 174b01c7715SBarry Smith case 5: 175b01c7715SBarry Smith for (i = 0; i < mbs; i++) { 176b01c7715SBarry Smith odiag = v + 25 * diag_offset[i]; 1779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag, odiag, 25)); 1789566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_5(diag, ipvt, work, shift, allowzeropivot, &zeropivotdetected)); 1797b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 180b01c7715SBarry Smith diag += 25; 181b01c7715SBarry Smith } 182b01c7715SBarry Smith break; 183d49b2adcSBarry Smith case 6: 184d49b2adcSBarry Smith for (i = 0; i < mbs; i++) { 185d49b2adcSBarry Smith odiag = v + 36 * diag_offset[i]; 1869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag, odiag, 36)); 1879566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_6(diag, shift, allowzeropivot, &zeropivotdetected)); 1887b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 189d49b2adcSBarry Smith diag += 36; 190d49b2adcSBarry Smith } 191d49b2adcSBarry Smith break; 192de80f912SBarry Smith case 7: 193de80f912SBarry Smith for (i = 0; i < mbs; i++) { 194de80f912SBarry Smith odiag = v + 49 * diag_offset[i]; 1959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag, odiag, 49)); 1969566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_7(diag, shift, allowzeropivot, &zeropivotdetected)); 1977b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 198de80f912SBarry Smith diag += 49; 199de80f912SBarry Smith } 200de80f912SBarry Smith break; 201b01c7715SBarry Smith default: 2029566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bs, &v_work, bs, &v_pivots)); 203de80f912SBarry Smith for (i = 0; i < mbs; i++) { 204de80f912SBarry Smith odiag = v + bs2 * diag_offset[i]; 2059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag, odiag, bs2)); 2069566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A(bs, diag, v_pivots, v_work, allowzeropivot, &zeropivotdetected)); 2077b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 208de80f912SBarry Smith diag += bs2; 209de80f912SBarry Smith } 2109566063dSJacob Faibussowitsch PetscCall(PetscFree2(v_work, v_pivots)); 211b01c7715SBarry Smith } 212b01c7715SBarry Smith a->idiagvalid = PETSC_TRUE; 2133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214b01c7715SBarry Smith } 215b01c7715SBarry Smith 21666976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_SeqBAIJ(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 217d71ae5a4SJacob Faibussowitsch { 2186d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 219e48d15efSToby Isaac PetscScalar *x, *work, *w, *workt, *t; 220e48d15efSToby Isaac const MatScalar *v, *aa = a->a, *idiag; 221e48d15efSToby Isaac const PetscScalar *b, *xb; 2225455b99fSToby Isaac PetscScalar s[7], xw[7] = {0}; /* avoid some compilers thinking xw is uninitialized */ 223e48d15efSToby Isaac PetscInt m = a->mbs, i, i2, nz, bs = A->rmap->bs, bs2 = bs * bs, k, j, idx, it; 224c1ac3661SBarry Smith const PetscInt *diag, *ai = a->i, *aj = a->j, *vi; 225b01c7715SBarry Smith 226b01c7715SBarry Smith PetscFunctionBegin; 227b01c7715SBarry Smith its = its * lits; 2285f80ce2aSJacob Faibussowitsch PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat"); 2295f80ce2aSJacob Faibussowitsch PetscCheck(its > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 2305f80ce2aSJacob Faibussowitsch PetscCheck(!fshift, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for diagonal shift"); 2315f80ce2aSJacob Faibussowitsch PetscCheck(omega == 1.0, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for non-trivial relaxation factor"); 2325f80ce2aSJacob Faibussowitsch PetscCheck(!(flag & SOR_APPLY_UPPER) && !(flag & SOR_APPLY_LOWER), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for applying upper or lower triangular parts"); 233b01c7715SBarry Smith 2349566063dSJacob Faibussowitsch if (!a->idiagvalid) PetscCall(MatInvertBlockDiagonal(A, NULL)); 235b01c7715SBarry Smith 2363ba16761SJacob Faibussowitsch if (!m) PetscFunctionReturn(PETSC_SUCCESS); 237b01c7715SBarry Smith diag = a->diag; 238b01c7715SBarry Smith idiag = a->idiag; 239de80f912SBarry Smith k = PetscMax(A->rmap->n, A->cmap->n); 24048a46eb9SPierre Jolivet if (!a->mult_work) PetscCall(PetscMalloc1(k + 1, &a->mult_work)); 24148a46eb9SPierre Jolivet if (!a->sor_workt) PetscCall(PetscMalloc1(k, &a->sor_workt)); 24248a46eb9SPierre Jolivet if (!a->sor_work) PetscCall(PetscMalloc1(bs, &a->sor_work)); 2433475c22fSBarry Smith work = a->mult_work; 2443475c22fSBarry Smith t = a->sor_workt; 245de80f912SBarry Smith w = a->sor_work; 246de80f912SBarry Smith 2479566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 2489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 249de80f912SBarry Smith 250de80f912SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 251de80f912SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 252e48d15efSToby Isaac switch (bs) { 253e48d15efSToby Isaac case 1: 254e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(x, idiag, b); 255e48d15efSToby Isaac t[0] = b[0]; 256e48d15efSToby Isaac i2 = 1; 257e48d15efSToby Isaac idiag += 1; 258e48d15efSToby Isaac for (i = 1; i < m; i++) { 259e48d15efSToby Isaac v = aa + ai[i]; 260e48d15efSToby Isaac vi = aj + ai[i]; 261e48d15efSToby Isaac nz = diag[i] - ai[i]; 262e48d15efSToby Isaac s[0] = b[i2]; 263e48d15efSToby Isaac for (j = 0; j < nz; j++) { 264e48d15efSToby Isaac xw[0] = x[vi[j]]; 265e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw); 266e48d15efSToby Isaac } 267e48d15efSToby Isaac t[i2] = s[0]; 268e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw, idiag, s); 269e48d15efSToby Isaac x[i2] = xw[0]; 270e48d15efSToby Isaac idiag += 1; 271e48d15efSToby Isaac i2 += 1; 272e48d15efSToby Isaac } 273e48d15efSToby Isaac break; 274e48d15efSToby Isaac case 2: 275e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(x, idiag, b); 2769371c9d4SSatish Balay t[0] = b[0]; 2779371c9d4SSatish Balay t[1] = b[1]; 278e48d15efSToby Isaac i2 = 2; 279e48d15efSToby Isaac idiag += 4; 280e48d15efSToby Isaac for (i = 1; i < m; i++) { 281e48d15efSToby Isaac v = aa + 4 * ai[i]; 282e48d15efSToby Isaac vi = aj + ai[i]; 283e48d15efSToby Isaac nz = diag[i] - ai[i]; 2849371c9d4SSatish Balay s[0] = b[i2]; 2859371c9d4SSatish Balay s[1] = b[i2 + 1]; 286e48d15efSToby Isaac for (j = 0; j < nz; j++) { 287e48d15efSToby Isaac idx = 2 * vi[j]; 288e48d15efSToby Isaac it = 4 * j; 2899371c9d4SSatish Balay xw[0] = x[idx]; 2909371c9d4SSatish Balay xw[1] = x[1 + idx]; 291e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw); 292e48d15efSToby Isaac } 2939371c9d4SSatish Balay t[i2] = s[0]; 2949371c9d4SSatish Balay t[i2 + 1] = s[1]; 295e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw, idiag, s); 2969371c9d4SSatish Balay x[i2] = xw[0]; 2979371c9d4SSatish Balay x[i2 + 1] = xw[1]; 298e48d15efSToby Isaac idiag += 4; 299e48d15efSToby Isaac i2 += 2; 300e48d15efSToby Isaac } 301e48d15efSToby Isaac break; 302e48d15efSToby Isaac case 3: 303e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(x, idiag, b); 3049371c9d4SSatish Balay t[0] = b[0]; 3059371c9d4SSatish Balay t[1] = b[1]; 3069371c9d4SSatish Balay t[2] = b[2]; 307e48d15efSToby Isaac i2 = 3; 308e48d15efSToby Isaac idiag += 9; 309e48d15efSToby Isaac for (i = 1; i < m; i++) { 310e48d15efSToby Isaac v = aa + 9 * ai[i]; 311e48d15efSToby Isaac vi = aj + ai[i]; 312e48d15efSToby Isaac nz = diag[i] - ai[i]; 3139371c9d4SSatish Balay s[0] = b[i2]; 3149371c9d4SSatish Balay s[1] = b[i2 + 1]; 3159371c9d4SSatish Balay s[2] = b[i2 + 2]; 316e48d15efSToby Isaac while (nz--) { 317e48d15efSToby Isaac idx = 3 * (*vi++); 3189371c9d4SSatish Balay xw[0] = x[idx]; 3199371c9d4SSatish Balay xw[1] = x[1 + idx]; 3209371c9d4SSatish Balay xw[2] = x[2 + idx]; 321e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw); 322e48d15efSToby Isaac v += 9; 323e48d15efSToby Isaac } 3249371c9d4SSatish Balay t[i2] = s[0]; 3259371c9d4SSatish Balay t[i2 + 1] = s[1]; 3269371c9d4SSatish Balay t[i2 + 2] = s[2]; 327e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw, idiag, s); 3289371c9d4SSatish Balay x[i2] = xw[0]; 3299371c9d4SSatish Balay x[i2 + 1] = xw[1]; 3309371c9d4SSatish Balay x[i2 + 2] = xw[2]; 331e48d15efSToby Isaac idiag += 9; 332e48d15efSToby Isaac i2 += 3; 333e48d15efSToby Isaac } 334e48d15efSToby Isaac break; 335e48d15efSToby Isaac case 4: 336e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(x, idiag, b); 3379371c9d4SSatish Balay t[0] = b[0]; 3389371c9d4SSatish Balay t[1] = b[1]; 3399371c9d4SSatish Balay t[2] = b[2]; 3409371c9d4SSatish Balay t[3] = b[3]; 341e48d15efSToby Isaac i2 = 4; 342e48d15efSToby Isaac idiag += 16; 343e48d15efSToby Isaac for (i = 1; i < m; i++) { 344e48d15efSToby Isaac v = aa + 16 * ai[i]; 345e48d15efSToby Isaac vi = aj + ai[i]; 346e48d15efSToby Isaac nz = diag[i] - ai[i]; 3479371c9d4SSatish Balay s[0] = b[i2]; 3489371c9d4SSatish Balay s[1] = b[i2 + 1]; 3499371c9d4SSatish Balay s[2] = b[i2 + 2]; 3509371c9d4SSatish Balay s[3] = b[i2 + 3]; 351e48d15efSToby Isaac while (nz--) { 352e48d15efSToby Isaac idx = 4 * (*vi++); 3539371c9d4SSatish Balay xw[0] = x[idx]; 3549371c9d4SSatish Balay xw[1] = x[1 + idx]; 3559371c9d4SSatish Balay xw[2] = x[2 + idx]; 3569371c9d4SSatish Balay xw[3] = x[3 + idx]; 357e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw); 358e48d15efSToby Isaac v += 16; 359e48d15efSToby Isaac } 3609371c9d4SSatish Balay t[i2] = s[0]; 3619371c9d4SSatish Balay t[i2 + 1] = s[1]; 3629371c9d4SSatish Balay t[i2 + 2] = s[2]; 3639371c9d4SSatish Balay t[i2 + 3] = s[3]; 364e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw, idiag, s); 3659371c9d4SSatish Balay x[i2] = xw[0]; 3669371c9d4SSatish Balay x[i2 + 1] = xw[1]; 3679371c9d4SSatish Balay x[i2 + 2] = xw[2]; 3689371c9d4SSatish Balay x[i2 + 3] = xw[3]; 369e48d15efSToby Isaac idiag += 16; 370e48d15efSToby Isaac i2 += 4; 371e48d15efSToby Isaac } 372e48d15efSToby Isaac break; 373e48d15efSToby Isaac case 5: 374e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(x, idiag, b); 3759371c9d4SSatish Balay t[0] = b[0]; 3769371c9d4SSatish Balay t[1] = b[1]; 3779371c9d4SSatish Balay t[2] = b[2]; 3789371c9d4SSatish Balay t[3] = b[3]; 3799371c9d4SSatish Balay t[4] = b[4]; 380e48d15efSToby Isaac i2 = 5; 381e48d15efSToby Isaac idiag += 25; 382e48d15efSToby Isaac for (i = 1; i < m; i++) { 383e48d15efSToby Isaac v = aa + 25 * ai[i]; 384e48d15efSToby Isaac vi = aj + ai[i]; 385e48d15efSToby Isaac nz = diag[i] - ai[i]; 3869371c9d4SSatish Balay s[0] = b[i2]; 3879371c9d4SSatish Balay s[1] = b[i2 + 1]; 3889371c9d4SSatish Balay s[2] = b[i2 + 2]; 3899371c9d4SSatish Balay s[3] = b[i2 + 3]; 3909371c9d4SSatish Balay s[4] = b[i2 + 4]; 391e48d15efSToby Isaac while (nz--) { 392e48d15efSToby Isaac idx = 5 * (*vi++); 3939371c9d4SSatish Balay xw[0] = x[idx]; 3949371c9d4SSatish Balay xw[1] = x[1 + idx]; 3959371c9d4SSatish Balay xw[2] = x[2 + idx]; 3969371c9d4SSatish Balay xw[3] = x[3 + idx]; 3979371c9d4SSatish Balay xw[4] = x[4 + idx]; 398e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw); 399e48d15efSToby Isaac v += 25; 400e48d15efSToby Isaac } 4019371c9d4SSatish Balay t[i2] = s[0]; 4029371c9d4SSatish Balay t[i2 + 1] = s[1]; 4039371c9d4SSatish Balay t[i2 + 2] = s[2]; 4049371c9d4SSatish Balay t[i2 + 3] = s[3]; 4059371c9d4SSatish Balay t[i2 + 4] = s[4]; 406e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw, idiag, s); 4079371c9d4SSatish Balay x[i2] = xw[0]; 4089371c9d4SSatish Balay x[i2 + 1] = xw[1]; 4099371c9d4SSatish Balay x[i2 + 2] = xw[2]; 4109371c9d4SSatish Balay x[i2 + 3] = xw[3]; 4119371c9d4SSatish Balay x[i2 + 4] = xw[4]; 412e48d15efSToby Isaac idiag += 25; 413e48d15efSToby Isaac i2 += 5; 414e48d15efSToby Isaac } 415e48d15efSToby Isaac break; 416e48d15efSToby Isaac case 6: 417e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(x, idiag, b); 4189371c9d4SSatish Balay t[0] = b[0]; 4199371c9d4SSatish Balay t[1] = b[1]; 4209371c9d4SSatish Balay t[2] = b[2]; 4219371c9d4SSatish Balay t[3] = b[3]; 4229371c9d4SSatish Balay t[4] = b[4]; 4239371c9d4SSatish Balay t[5] = b[5]; 424e48d15efSToby Isaac i2 = 6; 425e48d15efSToby Isaac idiag += 36; 426e48d15efSToby Isaac for (i = 1; i < m; i++) { 427e48d15efSToby Isaac v = aa + 36 * ai[i]; 428e48d15efSToby Isaac vi = aj + ai[i]; 429e48d15efSToby Isaac nz = diag[i] - ai[i]; 4309371c9d4SSatish Balay s[0] = b[i2]; 4319371c9d4SSatish Balay s[1] = b[i2 + 1]; 4329371c9d4SSatish Balay s[2] = b[i2 + 2]; 4339371c9d4SSatish Balay s[3] = b[i2 + 3]; 4349371c9d4SSatish Balay s[4] = b[i2 + 4]; 4359371c9d4SSatish Balay s[5] = b[i2 + 5]; 436e48d15efSToby Isaac while (nz--) { 437e48d15efSToby Isaac idx = 6 * (*vi++); 4389371c9d4SSatish Balay xw[0] = x[idx]; 4399371c9d4SSatish Balay xw[1] = x[1 + idx]; 4409371c9d4SSatish Balay xw[2] = x[2 + idx]; 4419371c9d4SSatish Balay xw[3] = x[3 + idx]; 4429371c9d4SSatish Balay xw[4] = x[4 + idx]; 4439371c9d4SSatish Balay xw[5] = x[5 + idx]; 444e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw); 445e48d15efSToby Isaac v += 36; 446e48d15efSToby Isaac } 4479371c9d4SSatish Balay t[i2] = s[0]; 4489371c9d4SSatish Balay t[i2 + 1] = s[1]; 4499371c9d4SSatish Balay t[i2 + 2] = s[2]; 4509371c9d4SSatish Balay t[i2 + 3] = s[3]; 4519371c9d4SSatish Balay t[i2 + 4] = s[4]; 4529371c9d4SSatish Balay t[i2 + 5] = s[5]; 453e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw, idiag, s); 4549371c9d4SSatish Balay x[i2] = xw[0]; 4559371c9d4SSatish Balay x[i2 + 1] = xw[1]; 4569371c9d4SSatish Balay x[i2 + 2] = xw[2]; 4579371c9d4SSatish Balay x[i2 + 3] = xw[3]; 4589371c9d4SSatish Balay x[i2 + 4] = xw[4]; 4599371c9d4SSatish Balay x[i2 + 5] = xw[5]; 460e48d15efSToby Isaac idiag += 36; 461e48d15efSToby Isaac i2 += 6; 462e48d15efSToby Isaac } 463e48d15efSToby Isaac break; 464e48d15efSToby Isaac case 7: 465e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(x, idiag, b); 4669371c9d4SSatish Balay t[0] = b[0]; 4679371c9d4SSatish Balay t[1] = b[1]; 4689371c9d4SSatish Balay t[2] = b[2]; 4699371c9d4SSatish Balay t[3] = b[3]; 4709371c9d4SSatish Balay t[4] = b[4]; 4719371c9d4SSatish Balay t[5] = b[5]; 4729371c9d4SSatish Balay t[6] = b[6]; 473e48d15efSToby Isaac i2 = 7; 474e48d15efSToby Isaac idiag += 49; 475e48d15efSToby Isaac for (i = 1; i < m; i++) { 476e48d15efSToby Isaac v = aa + 49 * ai[i]; 477e48d15efSToby Isaac vi = aj + ai[i]; 478e48d15efSToby Isaac nz = diag[i] - ai[i]; 4799371c9d4SSatish Balay s[0] = b[i2]; 4809371c9d4SSatish Balay s[1] = b[i2 + 1]; 4819371c9d4SSatish Balay s[2] = b[i2 + 2]; 4829371c9d4SSatish Balay s[3] = b[i2 + 3]; 4839371c9d4SSatish Balay s[4] = b[i2 + 4]; 4849371c9d4SSatish Balay s[5] = b[i2 + 5]; 4859371c9d4SSatish Balay s[6] = b[i2 + 6]; 486e48d15efSToby Isaac while (nz--) { 487e48d15efSToby Isaac idx = 7 * (*vi++); 4889371c9d4SSatish Balay xw[0] = x[idx]; 4899371c9d4SSatish Balay xw[1] = x[1 + idx]; 4909371c9d4SSatish Balay xw[2] = x[2 + idx]; 4919371c9d4SSatish Balay xw[3] = x[3 + idx]; 4929371c9d4SSatish Balay xw[4] = x[4 + idx]; 4939371c9d4SSatish Balay xw[5] = x[5 + idx]; 4949371c9d4SSatish Balay xw[6] = x[6 + idx]; 495e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw); 496e48d15efSToby Isaac v += 49; 497e48d15efSToby Isaac } 4989371c9d4SSatish Balay t[i2] = s[0]; 4999371c9d4SSatish Balay t[i2 + 1] = s[1]; 5009371c9d4SSatish Balay t[i2 + 2] = s[2]; 5019371c9d4SSatish Balay t[i2 + 3] = s[3]; 5029371c9d4SSatish Balay t[i2 + 4] = s[4]; 5039371c9d4SSatish Balay t[i2 + 5] = s[5]; 5049371c9d4SSatish Balay t[i2 + 6] = s[6]; 505e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw, idiag, s); 5069371c9d4SSatish Balay x[i2] = xw[0]; 5079371c9d4SSatish Balay x[i2 + 1] = xw[1]; 5089371c9d4SSatish Balay x[i2 + 2] = xw[2]; 5099371c9d4SSatish Balay x[i2 + 3] = xw[3]; 5109371c9d4SSatish Balay x[i2 + 4] = xw[4]; 5119371c9d4SSatish Balay x[i2 + 5] = xw[5]; 5129371c9d4SSatish Balay x[i2 + 6] = xw[6]; 513e48d15efSToby Isaac idiag += 49; 514e48d15efSToby Isaac i2 += 7; 515e48d15efSToby Isaac } 516e48d15efSToby Isaac break; 517e48d15efSToby Isaac default: 51896b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs, bs, b, idiag, x); 5199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(t, b, bs)); 520de80f912SBarry Smith i2 = bs; 521de80f912SBarry Smith idiag += bs2; 522de80f912SBarry Smith for (i = 1; i < m; i++) { 523de80f912SBarry Smith v = aa + bs2 * ai[i]; 524de80f912SBarry Smith vi = aj + ai[i]; 525de80f912SBarry Smith nz = diag[i] - ai[i]; 526de80f912SBarry Smith 5279566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w, b + i2, bs)); 528de80f912SBarry Smith /* copy all rows of x that are needed into contiguous space */ 529de80f912SBarry Smith workt = work; 530de80f912SBarry Smith for (j = 0; j < nz; j++) { 5319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs)); 532de80f912SBarry Smith workt += bs; 533de80f912SBarry Smith } 53496b95a6bSBarry Smith PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work); 5359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(t + i2, w, bs)); 53696b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs, bs, w, idiag, x + i2); 537de80f912SBarry Smith 538de80f912SBarry Smith idiag += bs2; 539de80f912SBarry Smith i2 += bs; 540de80f912SBarry Smith } 541e48d15efSToby Isaac break; 542e48d15efSToby Isaac } 543de80f912SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 5449566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * bs2 * a->nz)); 545e48d15efSToby Isaac xb = t; 5469371c9d4SSatish Balay } else xb = b; 547de80f912SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 548e48d15efSToby Isaac idiag = a->idiag + bs2 * (a->mbs - 1); 549e48d15efSToby Isaac i2 = bs * (m - 1); 550e48d15efSToby Isaac switch (bs) { 551e48d15efSToby Isaac case 1: 552e48d15efSToby Isaac s[0] = xb[i2]; 553e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw, idiag, s); 554e48d15efSToby Isaac x[i2] = xw[0]; 555e48d15efSToby Isaac i2 -= 1; 556e48d15efSToby Isaac for (i = m - 2; i >= 0; i--) { 557e48d15efSToby Isaac v = aa + (diag[i] + 1); 558e48d15efSToby Isaac vi = aj + diag[i] + 1; 559e48d15efSToby Isaac nz = ai[i + 1] - diag[i] - 1; 560e48d15efSToby Isaac s[0] = xb[i2]; 561e48d15efSToby Isaac for (j = 0; j < nz; j++) { 562e48d15efSToby Isaac xw[0] = x[vi[j]]; 563e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw); 564e48d15efSToby Isaac } 565e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw, idiag, s); 566e48d15efSToby Isaac x[i2] = xw[0]; 567e48d15efSToby Isaac idiag -= 1; 568e48d15efSToby Isaac i2 -= 1; 569e48d15efSToby Isaac } 570e48d15efSToby Isaac break; 571e48d15efSToby Isaac case 2: 5729371c9d4SSatish Balay s[0] = xb[i2]; 5739371c9d4SSatish Balay s[1] = xb[i2 + 1]; 574e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw, idiag, s); 5759371c9d4SSatish Balay x[i2] = xw[0]; 5769371c9d4SSatish Balay x[i2 + 1] = xw[1]; 577e48d15efSToby Isaac i2 -= 2; 578e48d15efSToby Isaac idiag -= 4; 579e48d15efSToby Isaac for (i = m - 2; i >= 0; i--) { 580e48d15efSToby Isaac v = aa + 4 * (diag[i] + 1); 581e48d15efSToby Isaac vi = aj + diag[i] + 1; 582e48d15efSToby Isaac nz = ai[i + 1] - diag[i] - 1; 5839371c9d4SSatish Balay s[0] = xb[i2]; 5849371c9d4SSatish Balay s[1] = xb[i2 + 1]; 585e48d15efSToby Isaac for (j = 0; j < nz; j++) { 586e48d15efSToby Isaac idx = 2 * vi[j]; 587e48d15efSToby Isaac it = 4 * j; 5889371c9d4SSatish Balay xw[0] = x[idx]; 5899371c9d4SSatish Balay xw[1] = x[1 + idx]; 590e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw); 591e48d15efSToby Isaac } 592e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw, idiag, s); 5939371c9d4SSatish Balay x[i2] = xw[0]; 5949371c9d4SSatish Balay x[i2 + 1] = xw[1]; 595e48d15efSToby Isaac idiag -= 4; 596e48d15efSToby Isaac i2 -= 2; 597e48d15efSToby Isaac } 598e48d15efSToby Isaac break; 599e48d15efSToby Isaac case 3: 6009371c9d4SSatish Balay s[0] = xb[i2]; 6019371c9d4SSatish Balay s[1] = xb[i2 + 1]; 6029371c9d4SSatish Balay s[2] = xb[i2 + 2]; 603e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw, idiag, s); 6049371c9d4SSatish Balay x[i2] = xw[0]; 6059371c9d4SSatish Balay x[i2 + 1] = xw[1]; 6069371c9d4SSatish Balay x[i2 + 2] = xw[2]; 607e48d15efSToby Isaac i2 -= 3; 608e48d15efSToby Isaac idiag -= 9; 609e48d15efSToby Isaac for (i = m - 2; i >= 0; i--) { 610e48d15efSToby Isaac v = aa + 9 * (diag[i] + 1); 611e48d15efSToby Isaac vi = aj + diag[i] + 1; 612e48d15efSToby Isaac nz = ai[i + 1] - diag[i] - 1; 6139371c9d4SSatish Balay s[0] = xb[i2]; 6149371c9d4SSatish Balay s[1] = xb[i2 + 1]; 6159371c9d4SSatish Balay s[2] = xb[i2 + 2]; 616e48d15efSToby Isaac while (nz--) { 617e48d15efSToby Isaac idx = 3 * (*vi++); 6189371c9d4SSatish Balay xw[0] = x[idx]; 6199371c9d4SSatish Balay xw[1] = x[1 + idx]; 6209371c9d4SSatish Balay xw[2] = x[2 + idx]; 621e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw); 622e48d15efSToby Isaac v += 9; 623e48d15efSToby Isaac } 624e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw, idiag, s); 6259371c9d4SSatish Balay x[i2] = xw[0]; 6269371c9d4SSatish Balay x[i2 + 1] = xw[1]; 6279371c9d4SSatish Balay x[i2 + 2] = xw[2]; 628e48d15efSToby Isaac idiag -= 9; 629e48d15efSToby Isaac i2 -= 3; 630e48d15efSToby Isaac } 631e48d15efSToby Isaac break; 632e48d15efSToby Isaac case 4: 6339371c9d4SSatish Balay s[0] = xb[i2]; 6349371c9d4SSatish Balay s[1] = xb[i2 + 1]; 6359371c9d4SSatish Balay s[2] = xb[i2 + 2]; 6369371c9d4SSatish Balay s[3] = xb[i2 + 3]; 637e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw, idiag, s); 6389371c9d4SSatish Balay x[i2] = xw[0]; 6399371c9d4SSatish Balay x[i2 + 1] = xw[1]; 6409371c9d4SSatish Balay x[i2 + 2] = xw[2]; 6419371c9d4SSatish Balay x[i2 + 3] = xw[3]; 642e48d15efSToby Isaac i2 -= 4; 643e48d15efSToby Isaac idiag -= 16; 644e48d15efSToby Isaac for (i = m - 2; i >= 0; i--) { 645e48d15efSToby Isaac v = aa + 16 * (diag[i] + 1); 646e48d15efSToby Isaac vi = aj + diag[i] + 1; 647e48d15efSToby Isaac nz = ai[i + 1] - diag[i] - 1; 6489371c9d4SSatish Balay s[0] = xb[i2]; 6499371c9d4SSatish Balay s[1] = xb[i2 + 1]; 6509371c9d4SSatish Balay s[2] = xb[i2 + 2]; 6519371c9d4SSatish Balay s[3] = xb[i2 + 3]; 652e48d15efSToby Isaac while (nz--) { 653e48d15efSToby Isaac idx = 4 * (*vi++); 6549371c9d4SSatish Balay xw[0] = x[idx]; 6559371c9d4SSatish Balay xw[1] = x[1 + idx]; 6569371c9d4SSatish Balay xw[2] = x[2 + idx]; 6579371c9d4SSatish Balay xw[3] = x[3 + idx]; 658e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw); 659e48d15efSToby Isaac v += 16; 660e48d15efSToby Isaac } 661e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw, idiag, s); 6629371c9d4SSatish Balay x[i2] = xw[0]; 6639371c9d4SSatish Balay x[i2 + 1] = xw[1]; 6649371c9d4SSatish Balay x[i2 + 2] = xw[2]; 6659371c9d4SSatish Balay x[i2 + 3] = xw[3]; 666e48d15efSToby Isaac idiag -= 16; 667e48d15efSToby Isaac i2 -= 4; 668e48d15efSToby Isaac } 669e48d15efSToby Isaac break; 670e48d15efSToby Isaac case 5: 6719371c9d4SSatish Balay s[0] = xb[i2]; 6729371c9d4SSatish Balay s[1] = xb[i2 + 1]; 6739371c9d4SSatish Balay s[2] = xb[i2 + 2]; 6749371c9d4SSatish Balay s[3] = xb[i2 + 3]; 6759371c9d4SSatish Balay s[4] = xb[i2 + 4]; 676e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw, idiag, s); 6779371c9d4SSatish Balay x[i2] = xw[0]; 6789371c9d4SSatish Balay x[i2 + 1] = xw[1]; 6799371c9d4SSatish Balay x[i2 + 2] = xw[2]; 6809371c9d4SSatish Balay x[i2 + 3] = xw[3]; 6819371c9d4SSatish Balay x[i2 + 4] = xw[4]; 682e48d15efSToby Isaac i2 -= 5; 683e48d15efSToby Isaac idiag -= 25; 684e48d15efSToby Isaac for (i = m - 2; i >= 0; i--) { 685e48d15efSToby Isaac v = aa + 25 * (diag[i] + 1); 686e48d15efSToby Isaac vi = aj + diag[i] + 1; 687e48d15efSToby Isaac nz = ai[i + 1] - diag[i] - 1; 6889371c9d4SSatish Balay s[0] = xb[i2]; 6899371c9d4SSatish Balay s[1] = xb[i2 + 1]; 6909371c9d4SSatish Balay s[2] = xb[i2 + 2]; 6919371c9d4SSatish Balay s[3] = xb[i2 + 3]; 6929371c9d4SSatish Balay s[4] = xb[i2 + 4]; 693e48d15efSToby Isaac while (nz--) { 694e48d15efSToby Isaac idx = 5 * (*vi++); 6959371c9d4SSatish Balay xw[0] = x[idx]; 6969371c9d4SSatish Balay xw[1] = x[1 + idx]; 6979371c9d4SSatish Balay xw[2] = x[2 + idx]; 6989371c9d4SSatish Balay xw[3] = x[3 + idx]; 6999371c9d4SSatish Balay xw[4] = x[4 + idx]; 700e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw); 701e48d15efSToby Isaac v += 25; 702e48d15efSToby Isaac } 703e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw, idiag, s); 7049371c9d4SSatish Balay x[i2] = xw[0]; 7059371c9d4SSatish Balay x[i2 + 1] = xw[1]; 7069371c9d4SSatish Balay x[i2 + 2] = xw[2]; 7079371c9d4SSatish Balay x[i2 + 3] = xw[3]; 7089371c9d4SSatish Balay x[i2 + 4] = xw[4]; 709e48d15efSToby Isaac idiag -= 25; 710e48d15efSToby Isaac i2 -= 5; 711e48d15efSToby Isaac } 712e48d15efSToby Isaac break; 713e48d15efSToby Isaac case 6: 7149371c9d4SSatish Balay s[0] = xb[i2]; 7159371c9d4SSatish Balay s[1] = xb[i2 + 1]; 7169371c9d4SSatish Balay s[2] = xb[i2 + 2]; 7179371c9d4SSatish Balay s[3] = xb[i2 + 3]; 7189371c9d4SSatish Balay s[4] = xb[i2 + 4]; 7199371c9d4SSatish Balay s[5] = xb[i2 + 5]; 720e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw, idiag, s); 7219371c9d4SSatish Balay x[i2] = xw[0]; 7229371c9d4SSatish Balay x[i2 + 1] = xw[1]; 7239371c9d4SSatish Balay x[i2 + 2] = xw[2]; 7249371c9d4SSatish Balay x[i2 + 3] = xw[3]; 7259371c9d4SSatish Balay x[i2 + 4] = xw[4]; 7269371c9d4SSatish Balay x[i2 + 5] = xw[5]; 727e48d15efSToby Isaac i2 -= 6; 728e48d15efSToby Isaac idiag -= 36; 729e48d15efSToby Isaac for (i = m - 2; i >= 0; i--) { 730e48d15efSToby Isaac v = aa + 36 * (diag[i] + 1); 731e48d15efSToby Isaac vi = aj + diag[i] + 1; 732e48d15efSToby Isaac nz = ai[i + 1] - diag[i] - 1; 7339371c9d4SSatish Balay s[0] = xb[i2]; 7349371c9d4SSatish Balay s[1] = xb[i2 + 1]; 7359371c9d4SSatish Balay s[2] = xb[i2 + 2]; 7369371c9d4SSatish Balay s[3] = xb[i2 + 3]; 7379371c9d4SSatish Balay s[4] = xb[i2 + 4]; 7389371c9d4SSatish Balay s[5] = xb[i2 + 5]; 739e48d15efSToby Isaac while (nz--) { 740e48d15efSToby Isaac idx = 6 * (*vi++); 7419371c9d4SSatish Balay xw[0] = x[idx]; 7429371c9d4SSatish Balay xw[1] = x[1 + idx]; 7439371c9d4SSatish Balay xw[2] = x[2 + idx]; 7449371c9d4SSatish Balay xw[3] = x[3 + idx]; 7459371c9d4SSatish Balay xw[4] = x[4 + idx]; 7469371c9d4SSatish Balay xw[5] = x[5 + idx]; 747e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw); 748e48d15efSToby Isaac v += 36; 749e48d15efSToby Isaac } 750e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw, idiag, s); 7519371c9d4SSatish Balay x[i2] = xw[0]; 7529371c9d4SSatish Balay x[i2 + 1] = xw[1]; 7539371c9d4SSatish Balay x[i2 + 2] = xw[2]; 7549371c9d4SSatish Balay x[i2 + 3] = xw[3]; 7559371c9d4SSatish Balay x[i2 + 4] = xw[4]; 7569371c9d4SSatish Balay x[i2 + 5] = xw[5]; 757e48d15efSToby Isaac idiag -= 36; 758e48d15efSToby Isaac i2 -= 6; 759e48d15efSToby Isaac } 760e48d15efSToby Isaac break; 761e48d15efSToby Isaac case 7: 7629371c9d4SSatish Balay s[0] = xb[i2]; 7639371c9d4SSatish Balay s[1] = xb[i2 + 1]; 7649371c9d4SSatish Balay s[2] = xb[i2 + 2]; 7659371c9d4SSatish Balay s[3] = xb[i2 + 3]; 7669371c9d4SSatish Balay s[4] = xb[i2 + 4]; 7679371c9d4SSatish Balay s[5] = xb[i2 + 5]; 7689371c9d4SSatish Balay s[6] = xb[i2 + 6]; 769e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(x, idiag, b); 7709371c9d4SSatish Balay x[i2] = xw[0]; 7719371c9d4SSatish Balay x[i2 + 1] = xw[1]; 7729371c9d4SSatish Balay x[i2 + 2] = xw[2]; 7739371c9d4SSatish Balay x[i2 + 3] = xw[3]; 7749371c9d4SSatish Balay x[i2 + 4] = xw[4]; 7759371c9d4SSatish Balay x[i2 + 5] = xw[5]; 7769371c9d4SSatish Balay x[i2 + 6] = xw[6]; 777e48d15efSToby Isaac i2 -= 7; 778e48d15efSToby Isaac idiag -= 49; 779e48d15efSToby Isaac for (i = m - 2; i >= 0; i--) { 780e48d15efSToby Isaac v = aa + 49 * (diag[i] + 1); 781e48d15efSToby Isaac vi = aj + diag[i] + 1; 782e48d15efSToby Isaac nz = ai[i + 1] - diag[i] - 1; 7839371c9d4SSatish Balay s[0] = xb[i2]; 7849371c9d4SSatish Balay s[1] = xb[i2 + 1]; 7859371c9d4SSatish Balay s[2] = xb[i2 + 2]; 7869371c9d4SSatish Balay s[3] = xb[i2 + 3]; 7879371c9d4SSatish Balay s[4] = xb[i2 + 4]; 7889371c9d4SSatish Balay s[5] = xb[i2 + 5]; 7899371c9d4SSatish Balay s[6] = xb[i2 + 6]; 790e48d15efSToby Isaac while (nz--) { 791e48d15efSToby Isaac idx = 7 * (*vi++); 7929371c9d4SSatish Balay xw[0] = x[idx]; 7939371c9d4SSatish Balay xw[1] = x[1 + idx]; 7949371c9d4SSatish Balay xw[2] = x[2 + idx]; 7959371c9d4SSatish Balay xw[3] = x[3 + idx]; 7969371c9d4SSatish Balay xw[4] = x[4 + idx]; 7979371c9d4SSatish Balay xw[5] = x[5 + idx]; 7989371c9d4SSatish Balay xw[6] = x[6 + idx]; 799e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw); 800e48d15efSToby Isaac v += 49; 801e48d15efSToby Isaac } 802e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw, idiag, s); 8039371c9d4SSatish Balay x[i2] = xw[0]; 8049371c9d4SSatish Balay x[i2 + 1] = xw[1]; 8059371c9d4SSatish Balay x[i2 + 2] = xw[2]; 8069371c9d4SSatish Balay x[i2 + 3] = xw[3]; 8079371c9d4SSatish Balay x[i2 + 4] = xw[4]; 8089371c9d4SSatish Balay x[i2 + 5] = xw[5]; 8099371c9d4SSatish Balay x[i2 + 6] = xw[6]; 810e48d15efSToby Isaac idiag -= 49; 811e48d15efSToby Isaac i2 -= 7; 812e48d15efSToby Isaac } 813e48d15efSToby Isaac break; 814e48d15efSToby Isaac default: 8159566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w, xb + i2, bs)); 81696b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs, bs, w, idiag, x + i2); 817de80f912SBarry Smith i2 -= bs; 818e48d15efSToby Isaac idiag -= bs2; 819de80f912SBarry Smith for (i = m - 2; i >= 0; i--) { 820de80f912SBarry Smith v = aa + bs2 * (diag[i] + 1); 821de80f912SBarry Smith vi = aj + diag[i] + 1; 822de80f912SBarry Smith nz = ai[i + 1] - diag[i] - 1; 823de80f912SBarry Smith 8249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w, xb + i2, bs)); 825de80f912SBarry Smith /* copy all rows of x that are needed into contiguous space */ 826de80f912SBarry Smith workt = work; 827de80f912SBarry Smith for (j = 0; j < nz; j++) { 8289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs)); 829de80f912SBarry Smith workt += bs; 830de80f912SBarry Smith } 83196b95a6bSBarry Smith PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work); 83296b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs, bs, w, idiag, x + i2); 833e48d15efSToby Isaac 834de80f912SBarry Smith idiag -= bs2; 835de80f912SBarry Smith i2 -= bs; 836de80f912SBarry Smith } 837e48d15efSToby Isaac break; 838e48d15efSToby Isaac } 8399566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * bs2 * (a->nz))); 840de80f912SBarry Smith } 841e48d15efSToby Isaac its--; 842e48d15efSToby Isaac } 843e48d15efSToby Isaac while (its--) { 844e48d15efSToby Isaac if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 845e48d15efSToby Isaac idiag = a->idiag; 846e48d15efSToby Isaac i2 = 0; 847e48d15efSToby Isaac switch (bs) { 848e48d15efSToby Isaac case 1: 849e48d15efSToby Isaac for (i = 0; i < m; i++) { 850e48d15efSToby Isaac v = aa + ai[i]; 851e48d15efSToby Isaac vi = aj + ai[i]; 852e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 853e48d15efSToby Isaac s[0] = b[i2]; 854e48d15efSToby Isaac for (j = 0; j < nz; j++) { 855e48d15efSToby Isaac xw[0] = x[vi[j]]; 856e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw); 857e48d15efSToby Isaac } 858e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw, idiag, s); 859e48d15efSToby Isaac x[i2] += xw[0]; 860e48d15efSToby Isaac idiag += 1; 861e48d15efSToby Isaac i2 += 1; 862e48d15efSToby Isaac } 863e48d15efSToby Isaac break; 864e48d15efSToby Isaac case 2: 865e48d15efSToby Isaac for (i = 0; i < m; i++) { 866e48d15efSToby Isaac v = aa + 4 * ai[i]; 867e48d15efSToby Isaac vi = aj + ai[i]; 868e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 8699371c9d4SSatish Balay s[0] = b[i2]; 8709371c9d4SSatish Balay s[1] = b[i2 + 1]; 871e48d15efSToby Isaac for (j = 0; j < nz; j++) { 872e48d15efSToby Isaac idx = 2 * vi[j]; 873e48d15efSToby Isaac it = 4 * j; 8749371c9d4SSatish Balay xw[0] = x[idx]; 8759371c9d4SSatish Balay xw[1] = x[1 + idx]; 876e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw); 877e48d15efSToby Isaac } 878e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw, idiag, s); 8799371c9d4SSatish Balay x[i2] += xw[0]; 8809371c9d4SSatish Balay x[i2 + 1] += xw[1]; 881e48d15efSToby Isaac idiag += 4; 882e48d15efSToby Isaac i2 += 2; 883e48d15efSToby Isaac } 884e48d15efSToby Isaac break; 885e48d15efSToby Isaac case 3: 886e48d15efSToby Isaac for (i = 0; i < m; i++) { 887e48d15efSToby Isaac v = aa + 9 * ai[i]; 888e48d15efSToby Isaac vi = aj + ai[i]; 889e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 8909371c9d4SSatish Balay s[0] = b[i2]; 8919371c9d4SSatish Balay s[1] = b[i2 + 1]; 8929371c9d4SSatish Balay s[2] = b[i2 + 2]; 893e48d15efSToby Isaac while (nz--) { 894e48d15efSToby Isaac idx = 3 * (*vi++); 8959371c9d4SSatish Balay xw[0] = x[idx]; 8969371c9d4SSatish Balay xw[1] = x[1 + idx]; 8979371c9d4SSatish Balay xw[2] = x[2 + idx]; 898e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw); 899e48d15efSToby Isaac v += 9; 900e48d15efSToby Isaac } 901e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw, idiag, s); 9029371c9d4SSatish Balay x[i2] += xw[0]; 9039371c9d4SSatish Balay x[i2 + 1] += xw[1]; 9049371c9d4SSatish Balay x[i2 + 2] += xw[2]; 905e48d15efSToby Isaac idiag += 9; 906e48d15efSToby Isaac i2 += 3; 907e48d15efSToby Isaac } 908e48d15efSToby Isaac break; 909e48d15efSToby Isaac case 4: 910e48d15efSToby Isaac for (i = 0; i < m; i++) { 911e48d15efSToby Isaac v = aa + 16 * ai[i]; 912e48d15efSToby Isaac vi = aj + ai[i]; 913e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 9149371c9d4SSatish Balay s[0] = b[i2]; 9159371c9d4SSatish Balay s[1] = b[i2 + 1]; 9169371c9d4SSatish Balay s[2] = b[i2 + 2]; 9179371c9d4SSatish Balay s[3] = b[i2 + 3]; 918e48d15efSToby Isaac while (nz--) { 919e48d15efSToby Isaac idx = 4 * (*vi++); 9209371c9d4SSatish Balay xw[0] = x[idx]; 9219371c9d4SSatish Balay xw[1] = x[1 + idx]; 9229371c9d4SSatish Balay xw[2] = x[2 + idx]; 9239371c9d4SSatish Balay xw[3] = x[3 + idx]; 924e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw); 925e48d15efSToby Isaac v += 16; 926e48d15efSToby Isaac } 927e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw, idiag, s); 9289371c9d4SSatish Balay x[i2] += xw[0]; 9299371c9d4SSatish Balay x[i2 + 1] += xw[1]; 9309371c9d4SSatish Balay x[i2 + 2] += xw[2]; 9319371c9d4SSatish Balay x[i2 + 3] += xw[3]; 932e48d15efSToby Isaac idiag += 16; 933e48d15efSToby Isaac i2 += 4; 934e48d15efSToby Isaac } 935e48d15efSToby Isaac break; 936e48d15efSToby Isaac case 5: 937e48d15efSToby Isaac for (i = 0; i < m; i++) { 938e48d15efSToby Isaac v = aa + 25 * ai[i]; 939e48d15efSToby Isaac vi = aj + ai[i]; 940e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 9419371c9d4SSatish Balay s[0] = b[i2]; 9429371c9d4SSatish Balay s[1] = b[i2 + 1]; 9439371c9d4SSatish Balay s[2] = b[i2 + 2]; 9449371c9d4SSatish Balay s[3] = b[i2 + 3]; 9459371c9d4SSatish Balay s[4] = b[i2 + 4]; 946e48d15efSToby Isaac while (nz--) { 947e48d15efSToby Isaac idx = 5 * (*vi++); 9489371c9d4SSatish Balay xw[0] = x[idx]; 9499371c9d4SSatish Balay xw[1] = x[1 + idx]; 9509371c9d4SSatish Balay xw[2] = x[2 + idx]; 9519371c9d4SSatish Balay xw[3] = x[3 + idx]; 9529371c9d4SSatish Balay xw[4] = x[4 + idx]; 953e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw); 954e48d15efSToby Isaac v += 25; 955e48d15efSToby Isaac } 956e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw, idiag, s); 9579371c9d4SSatish Balay x[i2] += xw[0]; 9589371c9d4SSatish Balay x[i2 + 1] += xw[1]; 9599371c9d4SSatish Balay x[i2 + 2] += xw[2]; 9609371c9d4SSatish Balay x[i2 + 3] += xw[3]; 9619371c9d4SSatish Balay x[i2 + 4] += xw[4]; 962e48d15efSToby Isaac idiag += 25; 963e48d15efSToby Isaac i2 += 5; 964e48d15efSToby Isaac } 965e48d15efSToby Isaac break; 966e48d15efSToby Isaac case 6: 967e48d15efSToby Isaac for (i = 0; i < m; i++) { 968e48d15efSToby Isaac v = aa + 36 * ai[i]; 969e48d15efSToby Isaac vi = aj + ai[i]; 970e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 9719371c9d4SSatish Balay s[0] = b[i2]; 9729371c9d4SSatish Balay s[1] = b[i2 + 1]; 9739371c9d4SSatish Balay s[2] = b[i2 + 2]; 9749371c9d4SSatish Balay s[3] = b[i2 + 3]; 9759371c9d4SSatish Balay s[4] = b[i2 + 4]; 9769371c9d4SSatish Balay s[5] = b[i2 + 5]; 977e48d15efSToby Isaac while (nz--) { 978e48d15efSToby Isaac idx = 6 * (*vi++); 9799371c9d4SSatish Balay xw[0] = x[idx]; 9809371c9d4SSatish Balay xw[1] = x[1 + idx]; 9819371c9d4SSatish Balay xw[2] = x[2 + idx]; 9829371c9d4SSatish Balay xw[3] = x[3 + idx]; 9839371c9d4SSatish Balay xw[4] = x[4 + idx]; 9849371c9d4SSatish Balay xw[5] = x[5 + idx]; 985e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw); 986e48d15efSToby Isaac v += 36; 987e48d15efSToby Isaac } 988e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw, idiag, s); 9899371c9d4SSatish Balay x[i2] += xw[0]; 9909371c9d4SSatish Balay x[i2 + 1] += xw[1]; 9919371c9d4SSatish Balay x[i2 + 2] += xw[2]; 9929371c9d4SSatish Balay x[i2 + 3] += xw[3]; 9939371c9d4SSatish Balay x[i2 + 4] += xw[4]; 9949371c9d4SSatish Balay x[i2 + 5] += xw[5]; 995e48d15efSToby Isaac idiag += 36; 996e48d15efSToby Isaac i2 += 6; 997e48d15efSToby Isaac } 998e48d15efSToby Isaac break; 999e48d15efSToby Isaac case 7: 1000e48d15efSToby Isaac for (i = 0; i < m; i++) { 1001e48d15efSToby Isaac v = aa + 49 * ai[i]; 1002e48d15efSToby Isaac vi = aj + ai[i]; 1003e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 10049371c9d4SSatish Balay s[0] = b[i2]; 10059371c9d4SSatish Balay s[1] = b[i2 + 1]; 10069371c9d4SSatish Balay s[2] = b[i2 + 2]; 10079371c9d4SSatish Balay s[3] = b[i2 + 3]; 10089371c9d4SSatish Balay s[4] = b[i2 + 4]; 10099371c9d4SSatish Balay s[5] = b[i2 + 5]; 10109371c9d4SSatish Balay s[6] = b[i2 + 6]; 1011e48d15efSToby Isaac while (nz--) { 1012e48d15efSToby Isaac idx = 7 * (*vi++); 10139371c9d4SSatish Balay xw[0] = x[idx]; 10149371c9d4SSatish Balay xw[1] = x[1 + idx]; 10159371c9d4SSatish Balay xw[2] = x[2 + idx]; 10169371c9d4SSatish Balay xw[3] = x[3 + idx]; 10179371c9d4SSatish Balay xw[4] = x[4 + idx]; 10189371c9d4SSatish Balay xw[5] = x[5 + idx]; 10199371c9d4SSatish Balay xw[6] = x[6 + idx]; 1020e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw); 1021e48d15efSToby Isaac v += 49; 1022e48d15efSToby Isaac } 1023e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw, idiag, s); 10249371c9d4SSatish Balay x[i2] += xw[0]; 10259371c9d4SSatish Balay x[i2 + 1] += xw[1]; 10269371c9d4SSatish Balay x[i2 + 2] += xw[2]; 10279371c9d4SSatish Balay x[i2 + 3] += xw[3]; 10289371c9d4SSatish Balay x[i2 + 4] += xw[4]; 10299371c9d4SSatish Balay x[i2 + 5] += xw[5]; 10309371c9d4SSatish Balay x[i2 + 6] += xw[6]; 1031e48d15efSToby Isaac idiag += 49; 1032e48d15efSToby Isaac i2 += 7; 1033e48d15efSToby Isaac } 1034e48d15efSToby Isaac break; 1035e48d15efSToby Isaac default: 1036e48d15efSToby Isaac for (i = 0; i < m; i++) { 1037e48d15efSToby Isaac v = aa + bs2 * ai[i]; 1038e48d15efSToby Isaac vi = aj + ai[i]; 1039e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 1040e48d15efSToby Isaac 10419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w, b + i2, bs)); 1042e48d15efSToby Isaac /* copy all rows of x that are needed into contiguous space */ 1043e48d15efSToby Isaac workt = work; 1044e48d15efSToby Isaac for (j = 0; j < nz; j++) { 10459566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs)); 1046e48d15efSToby Isaac workt += bs; 1047e48d15efSToby Isaac } 1048e48d15efSToby Isaac PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work); 1049e48d15efSToby Isaac PetscKernel_w_gets_w_plus_Ar_times_v(bs, bs, w, idiag, x + i2); 1050e48d15efSToby Isaac 1051e48d15efSToby Isaac idiag += bs2; 1052e48d15efSToby Isaac i2 += bs; 1053e48d15efSToby Isaac } 1054e48d15efSToby Isaac break; 1055e48d15efSToby Isaac } 10569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * bs2 * a->nz)); 1057e48d15efSToby Isaac } 1058e48d15efSToby Isaac if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 1059e48d15efSToby Isaac idiag = a->idiag + bs2 * (a->mbs - 1); 1060e48d15efSToby Isaac i2 = bs * (m - 1); 1061e48d15efSToby Isaac switch (bs) { 1062e48d15efSToby Isaac case 1: 1063e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1064e48d15efSToby Isaac v = aa + ai[i]; 1065e48d15efSToby Isaac vi = aj + ai[i]; 1066e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 1067e48d15efSToby Isaac s[0] = b[i2]; 1068e48d15efSToby Isaac for (j = 0; j < nz; j++) { 1069e48d15efSToby Isaac xw[0] = x[vi[j]]; 1070e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw); 1071e48d15efSToby Isaac } 1072e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw, idiag, s); 1073e48d15efSToby Isaac x[i2] += xw[0]; 1074e48d15efSToby Isaac idiag -= 1; 1075e48d15efSToby Isaac i2 -= 1; 1076e48d15efSToby Isaac } 1077e48d15efSToby Isaac break; 1078e48d15efSToby Isaac case 2: 1079e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1080e48d15efSToby Isaac v = aa + 4 * ai[i]; 1081e48d15efSToby Isaac vi = aj + ai[i]; 1082e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 10839371c9d4SSatish Balay s[0] = b[i2]; 10849371c9d4SSatish Balay s[1] = b[i2 + 1]; 1085e48d15efSToby Isaac for (j = 0; j < nz; j++) { 1086e48d15efSToby Isaac idx = 2 * vi[j]; 1087e48d15efSToby Isaac it = 4 * j; 10889371c9d4SSatish Balay xw[0] = x[idx]; 10899371c9d4SSatish Balay xw[1] = x[1 + idx]; 1090e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw); 1091e48d15efSToby Isaac } 1092e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw, idiag, s); 10939371c9d4SSatish Balay x[i2] += xw[0]; 10949371c9d4SSatish Balay x[i2 + 1] += xw[1]; 1095e48d15efSToby Isaac idiag -= 4; 1096e48d15efSToby Isaac i2 -= 2; 1097e48d15efSToby Isaac } 1098e48d15efSToby Isaac break; 1099e48d15efSToby Isaac case 3: 1100e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1101e48d15efSToby Isaac v = aa + 9 * ai[i]; 1102e48d15efSToby Isaac vi = aj + ai[i]; 1103e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 11049371c9d4SSatish Balay s[0] = b[i2]; 11059371c9d4SSatish Balay s[1] = b[i2 + 1]; 11069371c9d4SSatish Balay s[2] = b[i2 + 2]; 1107e48d15efSToby Isaac while (nz--) { 1108e48d15efSToby Isaac idx = 3 * (*vi++); 11099371c9d4SSatish Balay xw[0] = x[idx]; 11109371c9d4SSatish Balay xw[1] = x[1 + idx]; 11119371c9d4SSatish Balay xw[2] = x[2 + idx]; 1112e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw); 1113e48d15efSToby Isaac v += 9; 1114e48d15efSToby Isaac } 1115e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw, idiag, s); 11169371c9d4SSatish Balay x[i2] += xw[0]; 11179371c9d4SSatish Balay x[i2 + 1] += xw[1]; 11189371c9d4SSatish Balay x[i2 + 2] += xw[2]; 1119e48d15efSToby Isaac idiag -= 9; 1120e48d15efSToby Isaac i2 -= 3; 1121e48d15efSToby Isaac } 1122e48d15efSToby Isaac break; 1123e48d15efSToby Isaac case 4: 1124e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1125e48d15efSToby Isaac v = aa + 16 * ai[i]; 1126e48d15efSToby Isaac vi = aj + ai[i]; 1127e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 11289371c9d4SSatish Balay s[0] = b[i2]; 11299371c9d4SSatish Balay s[1] = b[i2 + 1]; 11309371c9d4SSatish Balay s[2] = b[i2 + 2]; 11319371c9d4SSatish Balay s[3] = b[i2 + 3]; 1132e48d15efSToby Isaac while (nz--) { 1133e48d15efSToby Isaac idx = 4 * (*vi++); 11349371c9d4SSatish Balay xw[0] = x[idx]; 11359371c9d4SSatish Balay xw[1] = x[1 + idx]; 11369371c9d4SSatish Balay xw[2] = x[2 + idx]; 11379371c9d4SSatish Balay xw[3] = x[3 + idx]; 1138e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw); 1139e48d15efSToby Isaac v += 16; 1140e48d15efSToby Isaac } 1141e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw, idiag, s); 11429371c9d4SSatish Balay x[i2] += xw[0]; 11439371c9d4SSatish Balay x[i2 + 1] += xw[1]; 11449371c9d4SSatish Balay x[i2 + 2] += xw[2]; 11459371c9d4SSatish Balay x[i2 + 3] += xw[3]; 1146e48d15efSToby Isaac idiag -= 16; 1147e48d15efSToby Isaac i2 -= 4; 1148e48d15efSToby Isaac } 1149e48d15efSToby Isaac break; 1150e48d15efSToby Isaac case 5: 1151e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1152e48d15efSToby Isaac v = aa + 25 * ai[i]; 1153e48d15efSToby Isaac vi = aj + ai[i]; 1154e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 11559371c9d4SSatish Balay s[0] = b[i2]; 11569371c9d4SSatish Balay s[1] = b[i2 + 1]; 11579371c9d4SSatish Balay s[2] = b[i2 + 2]; 11589371c9d4SSatish Balay s[3] = b[i2 + 3]; 11599371c9d4SSatish Balay s[4] = b[i2 + 4]; 1160e48d15efSToby Isaac while (nz--) { 1161e48d15efSToby Isaac idx = 5 * (*vi++); 11629371c9d4SSatish Balay xw[0] = x[idx]; 11639371c9d4SSatish Balay xw[1] = x[1 + idx]; 11649371c9d4SSatish Balay xw[2] = x[2 + idx]; 11659371c9d4SSatish Balay xw[3] = x[3 + idx]; 11669371c9d4SSatish Balay xw[4] = x[4 + idx]; 1167e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw); 1168e48d15efSToby Isaac v += 25; 1169e48d15efSToby Isaac } 1170e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw, idiag, s); 11719371c9d4SSatish Balay x[i2] += xw[0]; 11729371c9d4SSatish Balay x[i2 + 1] += xw[1]; 11739371c9d4SSatish Balay x[i2 + 2] += xw[2]; 11749371c9d4SSatish Balay x[i2 + 3] += xw[3]; 11759371c9d4SSatish Balay x[i2 + 4] += xw[4]; 1176e48d15efSToby Isaac idiag -= 25; 1177e48d15efSToby Isaac i2 -= 5; 1178e48d15efSToby Isaac } 1179e48d15efSToby Isaac break; 1180e48d15efSToby Isaac case 6: 1181e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1182e48d15efSToby Isaac v = aa + 36 * ai[i]; 1183e48d15efSToby Isaac vi = aj + ai[i]; 1184e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 11859371c9d4SSatish Balay s[0] = b[i2]; 11869371c9d4SSatish Balay s[1] = b[i2 + 1]; 11879371c9d4SSatish Balay s[2] = b[i2 + 2]; 11889371c9d4SSatish Balay s[3] = b[i2 + 3]; 11899371c9d4SSatish Balay s[4] = b[i2 + 4]; 11909371c9d4SSatish Balay s[5] = b[i2 + 5]; 1191e48d15efSToby Isaac while (nz--) { 1192e48d15efSToby Isaac idx = 6 * (*vi++); 11939371c9d4SSatish Balay xw[0] = x[idx]; 11949371c9d4SSatish Balay xw[1] = x[1 + idx]; 11959371c9d4SSatish Balay xw[2] = x[2 + idx]; 11969371c9d4SSatish Balay xw[3] = x[3 + idx]; 11979371c9d4SSatish Balay xw[4] = x[4 + idx]; 11989371c9d4SSatish Balay xw[5] = x[5 + idx]; 1199e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw); 1200e48d15efSToby Isaac v += 36; 1201e48d15efSToby Isaac } 1202e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw, idiag, s); 12039371c9d4SSatish Balay x[i2] += xw[0]; 12049371c9d4SSatish Balay x[i2 + 1] += xw[1]; 12059371c9d4SSatish Balay x[i2 + 2] += xw[2]; 12069371c9d4SSatish Balay x[i2 + 3] += xw[3]; 12079371c9d4SSatish Balay x[i2 + 4] += xw[4]; 12089371c9d4SSatish Balay x[i2 + 5] += xw[5]; 1209e48d15efSToby Isaac idiag -= 36; 1210e48d15efSToby Isaac i2 -= 6; 1211e48d15efSToby Isaac } 1212e48d15efSToby Isaac break; 1213e48d15efSToby Isaac case 7: 1214e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1215e48d15efSToby Isaac v = aa + 49 * ai[i]; 1216e48d15efSToby Isaac vi = aj + ai[i]; 1217e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 12189371c9d4SSatish Balay s[0] = b[i2]; 12199371c9d4SSatish Balay s[1] = b[i2 + 1]; 12209371c9d4SSatish Balay s[2] = b[i2 + 2]; 12219371c9d4SSatish Balay s[3] = b[i2 + 3]; 12229371c9d4SSatish Balay s[4] = b[i2 + 4]; 12239371c9d4SSatish Balay s[5] = b[i2 + 5]; 12249371c9d4SSatish Balay s[6] = b[i2 + 6]; 1225e48d15efSToby Isaac while (nz--) { 1226e48d15efSToby Isaac idx = 7 * (*vi++); 12279371c9d4SSatish Balay xw[0] = x[idx]; 12289371c9d4SSatish Balay xw[1] = x[1 + idx]; 12299371c9d4SSatish Balay xw[2] = x[2 + idx]; 12309371c9d4SSatish Balay xw[3] = x[3 + idx]; 12319371c9d4SSatish Balay xw[4] = x[4 + idx]; 12329371c9d4SSatish Balay xw[5] = x[5 + idx]; 12339371c9d4SSatish Balay xw[6] = x[6 + idx]; 1234e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw); 1235e48d15efSToby Isaac v += 49; 1236e48d15efSToby Isaac } 1237e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw, idiag, s); 12389371c9d4SSatish Balay x[i2] += xw[0]; 12399371c9d4SSatish Balay x[i2 + 1] += xw[1]; 12409371c9d4SSatish Balay x[i2 + 2] += xw[2]; 12419371c9d4SSatish Balay x[i2 + 3] += xw[3]; 12429371c9d4SSatish Balay x[i2 + 4] += xw[4]; 12439371c9d4SSatish Balay x[i2 + 5] += xw[5]; 12449371c9d4SSatish Balay x[i2 + 6] += xw[6]; 1245e48d15efSToby Isaac idiag -= 49; 1246e48d15efSToby Isaac i2 -= 7; 1247e48d15efSToby Isaac } 1248e48d15efSToby Isaac break; 1249e48d15efSToby Isaac default: 1250e48d15efSToby Isaac for (i = m - 1; i >= 0; i--) { 1251e48d15efSToby Isaac v = aa + bs2 * ai[i]; 1252e48d15efSToby Isaac vi = aj + ai[i]; 1253e48d15efSToby Isaac nz = ai[i + 1] - ai[i]; 1254e48d15efSToby Isaac 12559566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w, b + i2, bs)); 1256e48d15efSToby Isaac /* copy all rows of x that are needed into contiguous space */ 1257e48d15efSToby Isaac workt = work; 1258e48d15efSToby Isaac for (j = 0; j < nz; j++) { 12599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs)); 1260e48d15efSToby Isaac workt += bs; 1261e48d15efSToby Isaac } 1262e48d15efSToby Isaac PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work); 1263e48d15efSToby Isaac PetscKernel_w_gets_w_plus_Ar_times_v(bs, bs, w, idiag, x + i2); 1264e48d15efSToby Isaac 1265e48d15efSToby Isaac idiag -= bs2; 1266e48d15efSToby Isaac i2 -= bs; 1267e48d15efSToby Isaac } 1268e48d15efSToby Isaac break; 1269e48d15efSToby Isaac } 12709566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * bs2 * (a->nz))); 1271e48d15efSToby Isaac } 1272e48d15efSToby Isaac } 12739566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 12749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 12753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1276de80f912SBarry Smith } 1277de80f912SBarry Smith 1278af674e45SBarry Smith /* 127981824310SBarry Smith Special version for direct calls from Fortran (Used in PETSc-fun3d) 1280af674e45SBarry Smith */ 1281af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 1282af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 1283af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1284af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4 1285af674e45SBarry Smith #endif 1286af674e45SBarry Smith 1287d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesblocked4_(Mat *AA, PetscInt *mm, const PetscInt im[], PetscInt *nn, const PetscInt in[], const PetscScalar v[]) 1288d71ae5a4SJacob Faibussowitsch { 1289af674e45SBarry Smith Mat A = *AA; 1290af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 1291c1ac3661SBarry Smith PetscInt *rp, k, low, high, t, ii, jj, row, nrow, i, col, l, N, m = *mm, n = *nn; 1292c1ac3661SBarry Smith PetscInt *ai = a->i, *ailen = a->ilen; 129317ec6a02SBarry Smith PetscInt *aj = a->j, stepval, lastcol = -1; 1294f15d580aSBarry Smith const PetscScalar *value = v; 12954bb09213Spetsc MatScalar *ap, *aa = a->a, *bap; 1296af674e45SBarry Smith 1297af674e45SBarry Smith PetscFunctionBegin; 1298ce94432eSBarry Smith if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Can only be called with a block size of 4"); 1299af674e45SBarry Smith stepval = (n - 1) * 4; 1300af674e45SBarry Smith for (k = 0; k < m; k++) { /* loop over added rows */ 1301af674e45SBarry Smith row = im[k]; 1302af674e45SBarry Smith rp = aj + ai[row]; 1303af674e45SBarry Smith ap = aa + 16 * ai[row]; 1304af674e45SBarry Smith nrow = ailen[row]; 1305af674e45SBarry Smith low = 0; 130617ec6a02SBarry Smith high = nrow; 1307af674e45SBarry Smith for (l = 0; l < n; l++) { /* loop over added columns */ 1308af674e45SBarry Smith col = in[l]; 1309db4deed7SKarl Rupp if (col <= lastcol) low = 0; 1310db4deed7SKarl Rupp else high = nrow; 131117ec6a02SBarry Smith lastcol = col; 13121e3347e8SBarry Smith value = v + k * (stepval + 4 + l) * 4; 1313af674e45SBarry Smith while (high - low > 7) { 1314af674e45SBarry Smith t = (low + high) / 2; 1315af674e45SBarry Smith if (rp[t] > col) high = t; 1316af674e45SBarry Smith else low = t; 1317af674e45SBarry Smith } 1318af674e45SBarry Smith for (i = low; i < high; i++) { 1319af674e45SBarry Smith if (rp[i] > col) break; 1320af674e45SBarry Smith if (rp[i] == col) { 1321af674e45SBarry Smith bap = ap + 16 * i; 1322af674e45SBarry Smith for (ii = 0; ii < 4; ii++, value += stepval) { 1323ad540459SPierre Jolivet for (jj = ii; jj < 16; jj += 4) bap[jj] += *value++; 1324af674e45SBarry Smith } 1325af674e45SBarry Smith goto noinsert2; 1326af674e45SBarry Smith } 1327af674e45SBarry Smith } 1328af674e45SBarry Smith N = nrow++ - 1; 132917ec6a02SBarry Smith high++; /* added new column index thus must search to one higher than before */ 1330af674e45SBarry Smith /* shift up all the later entries in this row */ 1331af674e45SBarry Smith for (ii = N; ii >= i; ii--) { 1332af674e45SBarry Smith rp[ii + 1] = rp[ii]; 13339566063dSJacob Faibussowitsch PetscCallVoid(PetscArraycpy(ap + 16 * (ii + 1), ap + 16 * (ii), 16)); 1334af674e45SBarry Smith } 133548a46eb9SPierre Jolivet if (N >= i) PetscCallVoid(PetscArrayzero(ap + 16 * i, 16)); 1336af674e45SBarry Smith rp[i] = col; 1337af674e45SBarry Smith bap = ap + 16 * i; 1338af674e45SBarry Smith for (ii = 0; ii < 4; ii++, value += stepval) { 1339ad540459SPierre Jolivet for (jj = ii; jj < 16; jj += 4) bap[jj] = *value++; 1340af674e45SBarry Smith } 1341af674e45SBarry Smith noinsert2:; 1342af674e45SBarry Smith low = i; 1343af674e45SBarry Smith } 1344af674e45SBarry Smith ailen[row] = nrow; 1345af674e45SBarry Smith } 1346be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1347af674e45SBarry Smith } 1348af674e45SBarry Smith 1349af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 1350af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4 1351af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1352af674e45SBarry Smith #define matsetvalues4_ matsetvalues4 1353af674e45SBarry Smith #endif 1354af674e45SBarry Smith 1355d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvalues4_(Mat *AA, PetscInt *mm, PetscInt *im, PetscInt *nn, PetscInt *in, PetscScalar *v) 1356d71ae5a4SJacob Faibussowitsch { 1357af674e45SBarry Smith Mat A = *AA; 1358af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 1359580bdb30SBarry Smith PetscInt *rp, k, low, high, t, row, nrow, i, col, l, N, n = *nn, m = *mm; 1360c1ac3661SBarry Smith PetscInt *ai = a->i, *ailen = a->ilen; 1361c1ac3661SBarry Smith PetscInt *aj = a->j, brow, bcol; 136217ec6a02SBarry Smith PetscInt ridx, cidx, lastcol = -1; 1363af674e45SBarry Smith MatScalar *ap, value, *aa = a->a, *bap; 1364af674e45SBarry Smith 1365af674e45SBarry Smith PetscFunctionBegin; 1366af674e45SBarry Smith for (k = 0; k < m; k++) { /* loop over added rows */ 13679371c9d4SSatish Balay row = im[k]; 13689371c9d4SSatish Balay brow = row / 4; 1369af674e45SBarry Smith rp = aj + ai[brow]; 1370af674e45SBarry Smith ap = aa + 16 * ai[brow]; 1371af674e45SBarry Smith nrow = ailen[brow]; 1372af674e45SBarry Smith low = 0; 137317ec6a02SBarry Smith high = nrow; 1374af674e45SBarry Smith for (l = 0; l < n; l++) { /* loop over added columns */ 13759371c9d4SSatish Balay col = in[l]; 13769371c9d4SSatish Balay bcol = col / 4; 13779371c9d4SSatish Balay ridx = row % 4; 13789371c9d4SSatish Balay cidx = col % 4; 1379af674e45SBarry Smith value = v[l + k * n]; 1380db4deed7SKarl Rupp if (col <= lastcol) low = 0; 1381db4deed7SKarl Rupp else high = nrow; 138217ec6a02SBarry Smith lastcol = col; 1383af674e45SBarry Smith while (high - low > 7) { 1384af674e45SBarry Smith t = (low + high) / 2; 1385af674e45SBarry Smith if (rp[t] > bcol) high = t; 1386af674e45SBarry Smith else low = t; 1387af674e45SBarry Smith } 1388af674e45SBarry Smith for (i = low; i < high; i++) { 1389af674e45SBarry Smith if (rp[i] > bcol) break; 1390af674e45SBarry Smith if (rp[i] == bcol) { 1391af674e45SBarry Smith bap = ap + 16 * i + 4 * cidx + ridx; 1392af674e45SBarry Smith *bap += value; 1393af674e45SBarry Smith goto noinsert1; 1394af674e45SBarry Smith } 1395af674e45SBarry Smith } 1396af674e45SBarry Smith N = nrow++ - 1; 139717ec6a02SBarry Smith high++; /* added new column thus must search to one higher than before */ 1398af674e45SBarry Smith /* shift up all the later entries in this row */ 13999566063dSJacob Faibussowitsch PetscCallVoid(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 14009566063dSJacob Faibussowitsch PetscCallVoid(PetscArraymove(ap + 16 * i + 16, ap + 16 * i, 16 * (N - i + 1))); 14019566063dSJacob Faibussowitsch PetscCallVoid(PetscArrayzero(ap + 16 * i, 16)); 1402af674e45SBarry Smith rp[i] = bcol; 1403af674e45SBarry Smith ap[16 * i + 4 * cidx + ridx] = value; 1404af674e45SBarry Smith noinsert1:; 1405af674e45SBarry Smith low = i; 1406af674e45SBarry Smith } 1407af674e45SBarry Smith ailen[brow] = nrow; 1408af674e45SBarry Smith } 1409be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1410af674e45SBarry Smith } 1411af674e45SBarry Smith 1412be5855fcSBarry Smith /* 1413be5855fcSBarry Smith Checks for missing diagonals 1414be5855fcSBarry Smith */ 1415d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1416d71ae5a4SJacob Faibussowitsch { 1417be5855fcSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 14187734d3b5SMatthew G. Knepley PetscInt *diag, *ii = a->i, i; 1419be5855fcSBarry Smith 1420be5855fcSBarry Smith PetscFunctionBegin; 14219566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqBAIJ(A)); 14222af78befSBarry Smith *missing = PETSC_FALSE; 14237734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 14242efa7f71SHong Zhang *missing = PETSC_TRUE; 14252efa7f71SHong Zhang if (d) *d = 0; 14269566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n")); 14272efa7f71SHong Zhang } else { 142801445905SHong Zhang PetscInt n; 142901445905SHong Zhang n = PetscMin(a->mbs, a->nbs); 1430883fce79SBarry Smith diag = a->diag; 143101445905SHong Zhang for (i = 0; i < n; i++) { 14327734d3b5SMatthew G. Knepley if (diag[i] >= ii[i + 1]) { 14332af78befSBarry Smith *missing = PETSC_TRUE; 14342af78befSBarry Smith if (d) *d = i; 14359566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix is missing block diagonal number %" PetscInt_FMT "\n", i)); 1436358d2f5dSShri Abhyankar break; 14372efa7f71SHong Zhang } 1438be5855fcSBarry Smith } 1439be5855fcSBarry Smith } 14403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1441be5855fcSBarry Smith } 1442be5855fcSBarry Smith 1443d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1444d71ae5a4SJacob Faibussowitsch { 1445de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 144609f38230SBarry Smith PetscInt i, j, m = a->mbs; 1447de6a44a3SBarry Smith 14483a40ed3dSBarry Smith PetscFunctionBegin; 144909f38230SBarry Smith if (!a->diag) { 14509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &a->diag)); 14514fd072dbSBarry Smith a->free_diag = PETSC_TRUE; 145209f38230SBarry Smith } 14537fc0212eSBarry Smith for (i = 0; i < m; i++) { 145409f38230SBarry Smith a->diag[i] = a->i[i + 1]; 1455de6a44a3SBarry Smith for (j = a->i[i]; j < a->i[i + 1]; j++) { 1456de6a44a3SBarry Smith if (a->j[j] == i) { 145709f38230SBarry Smith a->diag[i] = j; 1458de6a44a3SBarry Smith break; 1459de6a44a3SBarry Smith } 1460de6a44a3SBarry Smith } 1461de6a44a3SBarry Smith } 14623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1463de6a44a3SBarry Smith } 14642593348eSBarry Smith 1465d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *inia[], const PetscInt *inja[], PetscBool *done) 1466d71ae5a4SJacob Faibussowitsch { 14673b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 14681a83f524SJed Brown PetscInt i, j, n = a->mbs, nz = a->i[n], *tia, *tja, bs = A->rmap->bs, k, l, cnt; 14691a83f524SJed Brown PetscInt **ia = (PetscInt **)inia, **ja = (PetscInt **)inja; 14703b2fbd54SBarry Smith 14713a40ed3dSBarry Smith PetscFunctionBegin; 14723b2fbd54SBarry Smith *nn = n; 14733ba16761SJacob Faibussowitsch if (!ia) PetscFunctionReturn(PETSC_SUCCESS); 14743b2fbd54SBarry Smith if (symmetric) { 14759566063dSJacob Faibussowitsch PetscCall(MatToSymmetricIJ_SeqAIJ(n, a->i, a->j, PETSC_TRUE, 0, 0, &tia, &tja)); 1476553b3c51SBarry Smith nz = tia[n]; 14773b2fbd54SBarry Smith } else { 14789371c9d4SSatish Balay tia = a->i; 14799371c9d4SSatish Balay tja = a->j; 14803b2fbd54SBarry Smith } 14813b2fbd54SBarry Smith 1482ecc77c7aSBarry Smith if (!blockcompressed && bs > 1) { 1483ecc77c7aSBarry Smith (*nn) *= bs; 14848f7157efSSatish Balay /* malloc & create the natural set of indices */ 14859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((n + 1) * bs, ia)); 14869985e31cSBarry Smith if (n) { 14872462f5fdSStefano Zampini (*ia)[0] = oshift; 1488ad540459SPierre Jolivet for (j = 1; j < bs; j++) (*ia)[j] = (tia[1] - tia[0]) * bs + (*ia)[j - 1]; 14899985e31cSBarry Smith } 1490ecc77c7aSBarry Smith 1491ecc77c7aSBarry Smith for (i = 1; i < n; i++) { 1492ecc77c7aSBarry Smith (*ia)[i * bs] = (tia[i] - tia[i - 1]) * bs + (*ia)[i * bs - 1]; 1493ad540459SPierre Jolivet for (j = 1; j < bs; j++) (*ia)[i * bs + j] = (tia[i + 1] - tia[i]) * bs + (*ia)[i * bs + j - 1]; 14948f7157efSSatish Balay } 1495ad540459SPierre Jolivet if (n) (*ia)[n * bs] = (tia[n] - tia[n - 1]) * bs + (*ia)[n * bs - 1]; 1496ecc77c7aSBarry Smith 14971a83f524SJed Brown if (inja) { 14989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz * bs * bs, ja)); 14999985e31cSBarry Smith cnt = 0; 15009985e31cSBarry Smith for (i = 0; i < n; i++) { 15019985e31cSBarry Smith for (j = 0; j < bs; j++) { 15029985e31cSBarry Smith for (k = tia[i]; k < tia[i + 1]; k++) { 1503ad540459SPierre Jolivet for (l = 0; l < bs; l++) (*ja)[cnt++] = bs * tja[k] + l; 15049985e31cSBarry Smith } 15059985e31cSBarry Smith } 15069985e31cSBarry Smith } 15079985e31cSBarry Smith } 15089985e31cSBarry Smith 15098f7157efSSatish Balay if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 15109566063dSJacob Faibussowitsch PetscCall(PetscFree(tia)); 15119566063dSJacob Faibussowitsch PetscCall(PetscFree(tja)); 15128f7157efSSatish Balay } 1513f6d58c54SBarry Smith } else if (oshift == 1) { 1514715a17b5SBarry Smith if (symmetric) { 1515a2ea699eSBarry Smith nz = tia[A->rmap->n / bs]; 1516715a17b5SBarry Smith /* add 1 to i and j indices */ 1517715a17b5SBarry Smith for (i = 0; i < A->rmap->n / bs + 1; i++) tia[i] = tia[i] + 1; 1518715a17b5SBarry Smith *ia = tia; 1519715a17b5SBarry Smith if (ja) { 1520715a17b5SBarry Smith for (i = 0; i < nz; i++) tja[i] = tja[i] + 1; 1521715a17b5SBarry Smith *ja = tja; 1522715a17b5SBarry Smith } 1523715a17b5SBarry Smith } else { 1524a2ea699eSBarry Smith nz = a->i[A->rmap->n / bs]; 1525f6d58c54SBarry Smith /* malloc space and add 1 to i and j indices */ 15269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->n / bs + 1, ia)); 1527f6d58c54SBarry Smith for (i = 0; i < A->rmap->n / bs + 1; i++) (*ia)[i] = a->i[i] + 1; 1528f6d58c54SBarry Smith if (ja) { 15299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, ja)); 1530f6d58c54SBarry Smith for (i = 0; i < nz; i++) (*ja)[i] = a->j[i] + 1; 1531f6d58c54SBarry Smith } 1532715a17b5SBarry Smith } 15338f7157efSSatish Balay } else { 15348f7157efSSatish Balay *ia = tia; 1535ecc77c7aSBarry Smith if (ja) *ja = tja; 15368f7157efSSatish Balay } 15373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15383b2fbd54SBarry Smith } 15393b2fbd54SBarry Smith 1540d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 1541d71ae5a4SJacob Faibussowitsch { 15423a40ed3dSBarry Smith PetscFunctionBegin; 15433ba16761SJacob Faibussowitsch if (!ia) PetscFunctionReturn(PETSC_SUCCESS); 1544715a17b5SBarry Smith if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) { 15459566063dSJacob Faibussowitsch PetscCall(PetscFree(*ia)); 15469566063dSJacob Faibussowitsch if (ja) PetscCall(PetscFree(*ja)); 15473b2fbd54SBarry Smith } 15483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15493b2fbd54SBarry Smith } 15503b2fbd54SBarry Smith 1551d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 1552d71ae5a4SJacob Faibussowitsch { 15532d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 15542d61bbb3SSatish Balay 1555433994e6SBarry Smith PetscFunctionBegin; 1556b4e2f619SBarry Smith if (A->hash_active) { 1557b4e2f619SBarry Smith PetscInt bs; 1558e3c72094SPierre Jolivet A->ops[0] = a->cops; 1559b4e2f619SBarry Smith PetscCall(PetscHMapIJVDestroy(&a->ht)); 1560b4e2f619SBarry Smith PetscCall(MatGetBlockSize(A, &bs)); 1561b4e2f619SBarry Smith if (bs > 1) PetscCall(PetscHSetIJDestroy(&a->bht)); 1562b4e2f619SBarry Smith PetscCall(PetscFree(a->dnz)); 1563b4e2f619SBarry Smith PetscCall(PetscFree(a->bdnz)); 1564b4e2f619SBarry Smith A->hash_active = PETSC_FALSE; 1565b4e2f619SBarry Smith } 15663ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->N, A->cmap->n, a->nz)); 15679566063dSJacob Faibussowitsch PetscCall(MatSeqXAIJFreeAIJ(A, &a->a, &a->j, &a->i)); 15689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 15699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 15709566063dSJacob Faibussowitsch if (a->free_diag) PetscCall(PetscFree(a->diag)); 15719566063dSJacob Faibussowitsch PetscCall(PetscFree(a->idiag)); 15729566063dSJacob Faibussowitsch if (a->free_imax_ilen) PetscCall(PetscFree2(a->imax, a->ilen)); 15739566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work)); 15749566063dSJacob Faibussowitsch PetscCall(PetscFree(a->mult_work)); 15759566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sor_workt)); 15769566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sor_work)); 15779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values)); 15799566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->compressedrow.i, a->compressedrow.rindex)); 1580c4319e64SHong Zhang 15819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&a->sbaijMat)); 15829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&a->parent)); 15839566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 1584901853e0SKris Buschelman 15859566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL)); 15869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJGetArray_C", NULL)); 15879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJRestoreArray_C", NULL)); 15889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL)); 15899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL)); 15909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJSetColumnIndices_C", NULL)); 15919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_seqaij_C", NULL)); 15929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_seqsbaij_C", NULL)); 15939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJSetPreallocation_C", NULL)); 15949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJSetPreallocationCSR_C", NULL)); 15959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_seqbstrm_C", NULL)); 15969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatIsTranspose_C", NULL)); 15977ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 15989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_hypre_C", NULL)); 15997ea3e4caSstefano_zampini #endif 16009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_is_C", NULL)); 16012e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL)); 16023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16032d61bbb3SSatish Balay } 16042d61bbb3SSatish Balay 160566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_SeqBAIJ(Mat A, MatOption op, PetscBool flg) 1606d71ae5a4SJacob Faibussowitsch { 16072d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 16082d61bbb3SSatish Balay 16092d61bbb3SSatish Balay PetscFunctionBegin; 1610aa275fccSKris Buschelman switch (op) { 1611d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED: 1612d71ae5a4SJacob Faibussowitsch a->roworiented = flg; 1613d71ae5a4SJacob Faibussowitsch break; 1614d71ae5a4SJacob Faibussowitsch case MAT_KEEP_NONZERO_PATTERN: 1615d71ae5a4SJacob Faibussowitsch a->keepnonzeropattern = flg; 1616d71ae5a4SJacob Faibussowitsch break; 1617d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATIONS: 1618d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? 0 : 1); 1619d71ae5a4SJacob Faibussowitsch break; 1620d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATION_ERR: 1621d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -1 : 0); 1622d71ae5a4SJacob Faibussowitsch break; 1623d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_ALLOCATION_ERR: 1624d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -2 : 0); 1625d71ae5a4SJacob Faibussowitsch break; 1626d71ae5a4SJacob Faibussowitsch case MAT_UNUSED_NONZERO_LOCATION_ERR: 1627d71ae5a4SJacob Faibussowitsch a->nounused = (flg ? -1 : 0); 1628d71ae5a4SJacob Faibussowitsch break; 16298c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1630aa275fccSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1631aa275fccSKris Buschelman case MAT_USE_HASH_TABLE: 1632d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1633d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1634d71ae5a4SJacob Faibussowitsch break; 16355021d80fSJed Brown case MAT_SPD: 163677e54ba9SKris Buschelman case MAT_SYMMETRIC: 163777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16389a4540c5SBarry Smith case MAT_HERMITIAN: 16399a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1640b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1641c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1642672ba085SHong Zhang case MAT_STRUCTURE_ONLY: 1643b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1644b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 164577e54ba9SKris Buschelman break; 1646d71ae5a4SJacob Faibussowitsch default: 1647d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16482d61bbb3SSatish Balay } 16493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16502d61bbb3SSatish Balay } 16512d61bbb3SSatish Balay 165252768537SHong Zhang /* used for both SeqBAIJ and SeqSBAIJ matrices */ 1653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqBAIJ_private(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v, PetscInt *ai, PetscInt *aj, PetscScalar *aa) 1654d71ae5a4SJacob Faibussowitsch { 165552768537SHong Zhang PetscInt itmp, i, j, k, M, bn, bp, *idx_i, bs, bs2; 165652768537SHong Zhang MatScalar *aa_i; 165787828ca2SBarry Smith PetscScalar *v_i; 16582d61bbb3SSatish Balay 16592d61bbb3SSatish Balay PetscFunctionBegin; 1660d0f46423SBarry Smith bs = A->rmap->bs; 166152768537SHong Zhang bs2 = bs * bs; 16625f80ce2aSJacob Faibussowitsch PetscCheck(row >= 0 && row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row); 16632d61bbb3SSatish Balay 16642d61bbb3SSatish Balay bn = row / bs; /* Block number */ 16652d61bbb3SSatish Balay bp = row % bs; /* Block Position */ 16662d61bbb3SSatish Balay M = ai[bn + 1] - ai[bn]; 16672d61bbb3SSatish Balay *nz = bs * M; 16682d61bbb3SSatish Balay 16692d61bbb3SSatish Balay if (v) { 1670f4259b30SLisandro Dalcin *v = NULL; 16712d61bbb3SSatish Balay if (*nz) { 16729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*nz, v)); 16732d61bbb3SSatish Balay for (i = 0; i < M; i++) { /* for each block in the block row */ 16742d61bbb3SSatish Balay v_i = *v + i * bs; 16752d61bbb3SSatish Balay aa_i = aa + bs2 * (ai[bn] + i); 167626fbe8dcSKarl Rupp for (j = bp, k = 0; j < bs2; j += bs, k++) v_i[k] = aa_i[j]; 16772d61bbb3SSatish Balay } 16782d61bbb3SSatish Balay } 16792d61bbb3SSatish Balay } 16802d61bbb3SSatish Balay 16812d61bbb3SSatish Balay if (idx) { 1682f4259b30SLisandro Dalcin *idx = NULL; 16832d61bbb3SSatish Balay if (*nz) { 16849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*nz, idx)); 16852d61bbb3SSatish Balay for (i = 0; i < M; i++) { /* for each block in the block row */ 16862d61bbb3SSatish Balay idx_i = *idx + i * bs; 16872d61bbb3SSatish Balay itmp = bs * aj[ai[bn] + i]; 168826fbe8dcSKarl Rupp for (j = 0; j < bs; j++) idx_i[j] = itmp++; 16892d61bbb3SSatish Balay } 16902d61bbb3SSatish Balay } 16912d61bbb3SSatish Balay } 16923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16932d61bbb3SSatish Balay } 16942d61bbb3SSatish Balay 1695d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1696d71ae5a4SJacob Faibussowitsch { 169752768537SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 169852768537SHong Zhang 169952768537SHong Zhang PetscFunctionBegin; 17009566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ_private(A, row, nz, idx, v, a->i, a->j, a->a)); 17013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 170252768537SHong Zhang } 170352768537SHong Zhang 1704d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1705d71ae5a4SJacob Faibussowitsch { 17062d61bbb3SSatish Balay PetscFunctionBegin; 17079566063dSJacob Faibussowitsch if (idx) PetscCall(PetscFree(*idx)); 17089566063dSJacob Faibussowitsch if (v) PetscCall(PetscFree(*v)); 17093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17102d61bbb3SSatish Balay } 17112d61bbb3SSatish Balay 171266976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_SeqBAIJ(Mat A, MatReuse reuse, Mat *B) 1713d71ae5a4SJacob Faibussowitsch { 171420e84f26SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *at; 17152d61bbb3SSatish Balay Mat C; 171620e84f26SHong Zhang PetscInt i, j, k, *aj = a->j, *ai = a->i, bs = A->rmap->bs, mbs = a->mbs, nbs = a->nbs, *atfill; 171720e84f26SHong Zhang PetscInt bs2 = a->bs2, *ati, *atj, anzj, kr; 171820e84f26SHong Zhang MatScalar *ata, *aa = a->a; 17192d61bbb3SSatish Balay 17202d61bbb3SSatish Balay PetscFunctionBegin; 17217fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 17229566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1 + nbs, &atfill)); 1723cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 172420e84f26SHong Zhang for (i = 0; i < ai[mbs]; i++) atfill[aj[i]] += 1; /* count num of non-zeros in row aj[i] */ 17252d61bbb3SSatish Balay 17269566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &C)); 17279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->cmap->n, A->rmap->N, A->cmap->n, A->rmap->N)); 17289566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 17299566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(C, bs, 0, atfill)); 173020e84f26SHong Zhang 173120e84f26SHong Zhang at = (Mat_SeqBAIJ *)C->data; 173220e84f26SHong Zhang ati = at->i; 173320e84f26SHong Zhang for (i = 0; i < nbs; i++) at->ilen[i] = at->imax[i] = ati[i + 1] - ati[i]; 1734fc4dec0aSBarry Smith } else { 1735fc4dec0aSBarry Smith C = *B; 173620e84f26SHong Zhang at = (Mat_SeqBAIJ *)C->data; 173720e84f26SHong Zhang ati = at->i; 1738fc4dec0aSBarry Smith } 1739fc4dec0aSBarry Smith 174020e84f26SHong Zhang atj = at->j; 174120e84f26SHong Zhang ata = at->a; 174220e84f26SHong Zhang 174320e84f26SHong Zhang /* Copy ati into atfill so we have locations of the next free space in atj */ 17449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(atfill, ati, nbs)); 174520e84f26SHong Zhang 174620e84f26SHong Zhang /* Walk through A row-wise and mark nonzero entries of A^T. */ 17472d61bbb3SSatish Balay for (i = 0; i < mbs; i++) { 174820e84f26SHong Zhang anzj = ai[i + 1] - ai[i]; 174920e84f26SHong Zhang for (j = 0; j < anzj; j++) { 175020e84f26SHong Zhang atj[atfill[*aj]] = i; 175120e84f26SHong Zhang for (kr = 0; kr < bs; kr++) { 1752ad540459SPierre Jolivet for (k = 0; k < bs; k++) ata[bs2 * atfill[*aj] + k * bs + kr] = *aa++; 17532d61bbb3SSatish Balay } 175420e84f26SHong Zhang atfill[*aj++] += 1; 175520e84f26SHong Zhang } 175620e84f26SHong Zhang } 17579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 17589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 17592d61bbb3SSatish Balay 176020e84f26SHong Zhang /* Clean up temporary space and complete requests. */ 17619566063dSJacob Faibussowitsch PetscCall(PetscFree(atfill)); 176220e84f26SHong Zhang 1763cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 17649566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(C, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 17652d61bbb3SSatish Balay *B = C; 17662d61bbb3SSatish Balay } else { 17679566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &C)); 17682d61bbb3SSatish Balay } 17693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17702d61bbb3SSatish Balay } 17712d61bbb3SSatish Balay 1772ff6a9541SJacob Faibussowitsch static PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A, Mat B, PetscReal tol, PetscBool *f) 1773d71ae5a4SJacob Faibussowitsch { 1774453d3561SHong Zhang Mat Btrans; 1775453d3561SHong Zhang 1776453d3561SHong Zhang PetscFunctionBegin; 1777453d3561SHong Zhang *f = PETSC_FALSE; 1778acd337a6SBarry Smith PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &Btrans)); 17799566063dSJacob Faibussowitsch PetscCall(MatEqual_SeqBAIJ(B, Btrans, f)); 17809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Btrans)); 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1782453d3561SHong Zhang } 1783453d3561SHong Zhang 1784618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */ 1785d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqBAIJ_Binary(Mat mat, PetscViewer viewer) 1786d71ae5a4SJacob Faibussowitsch { 1787b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)mat->data; 1788b51a4376SLisandro Dalcin PetscInt header[4], M, N, m, bs, nz, cnt, i, j, k, l; 1789b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1790b51a4376SLisandro Dalcin PetscScalar *matvals; 17912593348eSBarry Smith 17923a40ed3dSBarry Smith PetscFunctionBegin; 17939566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 17943b2fbd54SBarry Smith 1795b51a4376SLisandro Dalcin M = mat->rmap->N; 1796b51a4376SLisandro Dalcin N = mat->cmap->N; 1797b51a4376SLisandro Dalcin m = mat->rmap->n; 1798b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1799b51a4376SLisandro Dalcin nz = bs * bs * A->nz; 18002593348eSBarry Smith 1801b51a4376SLisandro Dalcin /* write matrix header */ 1802b51a4376SLisandro Dalcin header[0] = MAT_FILE_CLASSID; 18039371c9d4SSatish Balay header[1] = M; 18049371c9d4SSatish Balay header[2] = N; 18059371c9d4SSatish Balay header[3] = nz; 18069566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 18072593348eSBarry Smith 1808b51a4376SLisandro Dalcin /* store row lengths */ 18099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1810b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 18119371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i]); 18129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, rowlens, m, PETSC_INT)); 18139566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1814b51a4376SLisandro Dalcin 1815b51a4376SLisandro Dalcin /* store column indices */ 18169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1817b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 1818b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) 1819b51a4376SLisandro Dalcin for (j = A->i[i]; j < A->i[i + 1]; j++) 18209371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[j] + l; 18215f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz); 18229566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, colidxs, nz, PETSC_INT)); 18239566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 18242593348eSBarry Smith 18252593348eSBarry Smith /* store nonzero values */ 18269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1827b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 1828b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) 1829b51a4376SLisandro Dalcin for (j = A->i[i]; j < A->i[i + 1]; j++) 18309371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * j + l) + k]; 18315f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz); 18329566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, matvals, nz, PETSC_SCALAR)); 18339566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1834ce6f0cecSBarry Smith 1835b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 18369566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 18373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18382593348eSBarry Smith } 18392593348eSBarry Smith 1840d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_ASCII_structonly(Mat A, PetscViewer viewer) 1841d71ae5a4SJacob Faibussowitsch { 18427dc0baabSHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 18437dc0baabSHong Zhang PetscInt i, bs = A->rmap->bs, k; 18447dc0baabSHong Zhang 18457dc0baabSHong Zhang PetscFunctionBegin; 18469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 18477dc0baabSHong Zhang for (i = 0; i < a->mbs; i++) { 18489566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT "-%" PetscInt_FMT ":", i * bs, i * bs + bs - 1)); 184948a46eb9SPierre Jolivet for (k = a->i[i]; k < a->i[i + 1]; k++) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT "-%" PetscInt_FMT ") ", bs * a->j[k], bs * a->j[k] + bs - 1)); 18509566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 18517dc0baabSHong Zhang } 18529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 18533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18547dc0baabSHong Zhang } 18557dc0baabSHong Zhang 1856d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A, PetscViewer viewer) 1857d71ae5a4SJacob Faibussowitsch { 1858b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 1859d0f46423SBarry Smith PetscInt i, j, bs = A->rmap->bs, k, l, bs2 = a->bs2; 1860f3ef73ceSBarry Smith PetscViewerFormat format; 18612593348eSBarry Smith 18623a40ed3dSBarry Smith PetscFunctionBegin; 18637dc0baabSHong Zhang if (A->structure_only) { 18649566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_ASCII_structonly(A, viewer)); 18653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18667dc0baabSHong Zhang } 18677dc0baabSHong Zhang 18689566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1869456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 18709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 1871fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1872ade3a672SBarry Smith const char *matname; 1873bcd9e38bSBarry Smith Mat aij; 18749566063dSJacob Faibussowitsch PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &aij)); 18759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A, &matname)); 18769566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij, matname)); 18779566063dSJacob Faibussowitsch PetscCall(MatView(aij, viewer)); 18789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aij)); 187904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 18829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 188344cd7ae7SLois Curfman McInnes for (i = 0; i < a->mbs; i++) { 188444cd7ae7SLois Curfman McInnes for (j = 0; j < bs; j++) { 18859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i * bs + j)); 188644cd7ae7SLois Curfman McInnes for (k = a->i[i]; k < a->i[i + 1]; k++) { 188744cd7ae7SLois Curfman McInnes for (l = 0; l < bs; l++) { 1888aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 18890e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) > 0.0 && PetscRealPart(a->a[bs2 * k + l * bs + j]) != 0.0) { 18909371c9d4SSatish Balay PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %gi) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), (double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j]))); 18910e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) < 0.0 && PetscRealPart(a->a[bs2 * k + l * bs + j]) != 0.0) { 18929371c9d4SSatish Balay PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %gi) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), -(double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j]))); 18930e6d2581SBarry Smith } else if (PetscRealPart(a->a[bs2 * k + l * bs + j]) != 0.0) { 18949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]))); 18950ef38995SBarry Smith } 189644cd7ae7SLois Curfman McInnes #else 189748a46eb9SPierre Jolivet if (a->a[bs2 * k + l * bs + j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)a->a[bs2 * k + l * bs + j])); 189844cd7ae7SLois Curfman McInnes #endif 189944cd7ae7SLois Curfman McInnes } 190044cd7ae7SLois Curfman McInnes } 19019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 190244cd7ae7SLois Curfman McInnes } 190344cd7ae7SLois Curfman McInnes } 19049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 19050ef38995SBarry Smith } else { 19069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1907b6490206SBarry Smith for (i = 0; i < a->mbs; i++) { 1908b6490206SBarry Smith for (j = 0; j < bs; j++) { 19099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i * bs + j)); 1910b6490206SBarry Smith for (k = a->i[i]; k < a->i[i + 1]; k++) { 1911b6490206SBarry Smith for (l = 0; l < bs; l++) { 1912aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 19130e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) > 0.0) { 19149371c9d4SSatish Balay PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), (double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j]))); 19150e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) < 0.0) { 19169371c9d4SSatish Balay PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), -(double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j]))); 19170ef38995SBarry Smith } else { 19189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]))); 191988685aaeSLois Curfman McInnes } 192088685aaeSLois Curfman McInnes #else 19219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)a->a[bs2 * k + l * bs + j])); 192288685aaeSLois Curfman McInnes #endif 19232593348eSBarry Smith } 19242593348eSBarry Smith } 19259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 19262593348eSBarry Smith } 19272593348eSBarry Smith } 19289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1929b6490206SBarry Smith } 19309566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 19313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19322593348eSBarry Smith } 19332593348eSBarry Smith 19349804daf3SBarry Smith #include <petscdraw.h> 1935d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw, void *Aa) 1936d71ae5a4SJacob Faibussowitsch { 193777ed5343SBarry Smith Mat A = (Mat)Aa; 19383270192aSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 1939d0f46423SBarry Smith PetscInt row, i, j, k, l, mbs = a->mbs, color, bs = A->rmap->bs, bs2 = a->bs2; 19400e6d2581SBarry Smith PetscReal xl, yl, xr, yr, x_l, x_r, y_l, y_r; 19413f1db9ecSBarry Smith MatScalar *aa; 1942b0a32e0cSBarry Smith PetscViewer viewer; 1943b3e7f47fSJed Brown PetscViewerFormat format; 19443270192aSSatish Balay 19453a40ed3dSBarry Smith PetscFunctionBegin; 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer)); 19479566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 19489566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr)); 194977ed5343SBarry Smith 19503270192aSSatish Balay /* loop over matrix elements drawing boxes */ 1951b3e7f47fSJed Brown 1952b3e7f47fSJed Brown if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1953d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1954383922c3SLisandro Dalcin /* Blue for negative, Cyan for zero and Red for positive */ 1955b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 19563270192aSSatish Balay for (i = 0, row = 0; i < mbs; i++, row += bs) { 19573270192aSSatish Balay for (j = a->i[i]; j < a->i[i + 1]; j++) { 19589371c9d4SSatish Balay y_l = A->rmap->N - row - 1.0; 19599371c9d4SSatish Balay y_r = y_l + 1.0; 19609371c9d4SSatish Balay x_l = a->j[j] * bs; 19619371c9d4SSatish Balay x_r = x_l + 1.0; 19623270192aSSatish Balay aa = a->a + j * bs2; 19633270192aSSatish Balay for (k = 0; k < bs; k++) { 19643270192aSSatish Balay for (l = 0; l < bs; l++) { 19650e6d2581SBarry Smith if (PetscRealPart(*aa++) >= 0.) continue; 19669566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color)); 19673270192aSSatish Balay } 19683270192aSSatish Balay } 19693270192aSSatish Balay } 19703270192aSSatish Balay } 1971b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 19723270192aSSatish Balay for (i = 0, row = 0; i < mbs; i++, row += bs) { 19733270192aSSatish Balay for (j = a->i[i]; j < a->i[i + 1]; j++) { 19749371c9d4SSatish Balay y_l = A->rmap->N - row - 1.0; 19759371c9d4SSatish Balay y_r = y_l + 1.0; 19769371c9d4SSatish Balay x_l = a->j[j] * bs; 19779371c9d4SSatish Balay x_r = x_l + 1.0; 19783270192aSSatish Balay aa = a->a + j * bs2; 19793270192aSSatish Balay for (k = 0; k < bs; k++) { 19803270192aSSatish Balay for (l = 0; l < bs; l++) { 19810e6d2581SBarry Smith if (PetscRealPart(*aa++) != 0.) continue; 19829566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color)); 19833270192aSSatish Balay } 19843270192aSSatish Balay } 19853270192aSSatish Balay } 19863270192aSSatish Balay } 1987b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 19883270192aSSatish Balay for (i = 0, row = 0; i < mbs; i++, row += bs) { 19893270192aSSatish Balay for (j = a->i[i]; j < a->i[i + 1]; j++) { 19909371c9d4SSatish Balay y_l = A->rmap->N - row - 1.0; 19919371c9d4SSatish Balay y_r = y_l + 1.0; 19929371c9d4SSatish Balay x_l = a->j[j] * bs; 19939371c9d4SSatish Balay x_r = x_l + 1.0; 19943270192aSSatish Balay aa = a->a + j * bs2; 19953270192aSSatish Balay for (k = 0; k < bs; k++) { 19963270192aSSatish Balay for (l = 0; l < bs; l++) { 19970e6d2581SBarry Smith if (PetscRealPart(*aa++) <= 0.) continue; 19989566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color)); 19993270192aSSatish Balay } 20003270192aSSatish Balay } 20013270192aSSatish Balay } 20023270192aSSatish Balay } 2003d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 2004b3e7f47fSJed Brown } else { 2005b3e7f47fSJed Brown /* use contour shading to indicate magnitude of values */ 2006b3e7f47fSJed Brown /* first determine max of all nonzero values */ 2007b05fc000SLisandro Dalcin PetscReal minv = 0.0, maxv = 0.0; 2008b3e7f47fSJed Brown PetscDraw popup; 2009b3e7f47fSJed Brown 2010b3e7f47fSJed Brown for (i = 0; i < a->nz * a->bs2; i++) { 2011b3e7f47fSJed Brown if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]); 2012b3e7f47fSJed Brown } 2013383922c3SLisandro Dalcin if (minv >= maxv) maxv = minv + PETSC_SMALL; 20149566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 20159566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, 0.0, maxv)); 2016383922c3SLisandro Dalcin 2017d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 2018b3e7f47fSJed Brown for (i = 0, row = 0; i < mbs; i++, row += bs) { 2019b3e7f47fSJed Brown for (j = a->i[i]; j < a->i[i + 1]; j++) { 20209371c9d4SSatish Balay y_l = A->rmap->N - row - 1.0; 20219371c9d4SSatish Balay y_r = y_l + 1.0; 20229371c9d4SSatish Balay x_l = a->j[j] * bs; 20239371c9d4SSatish Balay x_r = x_l + 1.0; 2024b3e7f47fSJed Brown aa = a->a + j * bs2; 2025b3e7f47fSJed Brown for (k = 0; k < bs; k++) { 2026b3e7f47fSJed Brown for (l = 0; l < bs; l++) { 2027383922c3SLisandro Dalcin MatScalar v = *aa++; 2028383922c3SLisandro Dalcin color = PetscDrawRealToColor(PetscAbsScalar(v), minv, maxv); 20299566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color)); 2030b3e7f47fSJed Brown } 2031b3e7f47fSJed Brown } 2032b3e7f47fSJed Brown } 2033b3e7f47fSJed Brown } 2034d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 2035b3e7f47fSJed Brown } 20363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 203777ed5343SBarry Smith } 20383270192aSSatish Balay 2039d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A, PetscViewer viewer) 2040d71ae5a4SJacob Faibussowitsch { 20410e6d2581SBarry Smith PetscReal xl, yl, xr, yr, w, h; 2042b0a32e0cSBarry Smith PetscDraw draw; 2043ace3abfcSBarry Smith PetscBool isnull; 20443270192aSSatish Balay 204577ed5343SBarry Smith PetscFunctionBegin; 20469566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 20479566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 20483ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 204977ed5343SBarry Smith 20509371c9d4SSatish Balay xr = A->cmap->n; 20519371c9d4SSatish Balay yr = A->rmap->N; 20529371c9d4SSatish Balay h = yr / 10.0; 20539371c9d4SSatish Balay w = xr / 10.0; 20549371c9d4SSatish Balay xr += w; 20559371c9d4SSatish Balay yr += h; 20569371c9d4SSatish Balay xl = -w; 20579371c9d4SSatish Balay yl = -h; 20589566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr)); 20599566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer)); 20609566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw, MatView_SeqBAIJ_Draw_Zoom, A)); 20619566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL)); 20629566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 20633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20643270192aSSatish Balay } 20653270192aSSatish Balay 2066d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqBAIJ(Mat A, PetscViewer viewer) 2067d71ae5a4SJacob Faibussowitsch { 2068ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw; 20692593348eSBarry Smith 20703a40ed3dSBarry Smith PetscFunctionBegin; 20719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 20729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 20739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 207432077d6dSBarry Smith if (iascii) { 20759566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_ASCII(A, viewer)); 20760f5bd95cSBarry Smith } else if (isbinary) { 20779566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_Binary(A, viewer)); 20780f5bd95cSBarry Smith } else if (isdraw) { 20799566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_Draw(A, viewer)); 20805cd90555SBarry Smith } else { 2081a5e6ed63SBarry Smith Mat B; 20829566063dSJacob Faibussowitsch PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 20839566063dSJacob Faibussowitsch PetscCall(MatView(B, viewer)); 20849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 20852593348eSBarry Smith } 20863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20872593348eSBarry Smith } 2088b6490206SBarry Smith 2089d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[]) 2090d71ae5a4SJacob Faibussowitsch { 2091cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2092c1ac3661SBarry Smith PetscInt *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j; 2093c1ac3661SBarry Smith PetscInt *ai = a->i, *ailen = a->ilen; 2094d0f46423SBarry Smith PetscInt brow, bcol, ridx, cidx, bs = A->rmap->bs, bs2 = a->bs2; 209597e567efSBarry Smith MatScalar *ap, *aa = a->a; 2096cd0e1443SSatish Balay 20973a40ed3dSBarry Smith PetscFunctionBegin; 20982d61bbb3SSatish Balay for (k = 0; k < m; k++) { /* loop over rows */ 20999371c9d4SSatish Balay row = im[k]; 21009371c9d4SSatish Balay brow = row / bs; 21019371c9d4SSatish Balay if (row < 0) { 21029371c9d4SSatish Balay v += n; 21039371c9d4SSatish Balay continue; 21049371c9d4SSatish Balay } /* negative row */ 210554c59aa7SJacob Faibussowitsch PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " too large", row); 21068e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); 21078e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); 21082c3acbe9SBarry Smith nrow = ailen[brow]; 21092d61bbb3SSatish Balay for (l = 0; l < n; l++) { /* loop over columns */ 21109371c9d4SSatish Balay if (in[l] < 0) { 21119371c9d4SSatish Balay v++; 21129371c9d4SSatish Balay continue; 21139371c9d4SSatish Balay } /* negative column */ 211454c59aa7SJacob Faibussowitsch PetscCheck(in[l] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column %" PetscInt_FMT " too large", in[l]); 21152d61bbb3SSatish Balay col = in[l]; 21162d61bbb3SSatish Balay bcol = col / bs; 21172d61bbb3SSatish Balay cidx = col % bs; 21182d61bbb3SSatish Balay ridx = row % bs; 21192d61bbb3SSatish Balay high = nrow; 21202d61bbb3SSatish Balay low = 0; /* assume unsorted */ 21212d61bbb3SSatish Balay while (high - low > 5) { 2122cd0e1443SSatish Balay t = (low + high) / 2; 2123cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 2124cd0e1443SSatish Balay else low = t; 2125cd0e1443SSatish Balay } 2126cd0e1443SSatish Balay for (i = low; i < high; i++) { 2127cd0e1443SSatish Balay if (rp[i] > bcol) break; 2128cd0e1443SSatish Balay if (rp[i] == bcol) { 21292d61bbb3SSatish Balay *v++ = ap[bs2 * i + bs * cidx + ridx]; 21302d61bbb3SSatish Balay goto finished; 2131cd0e1443SSatish Balay } 2132cd0e1443SSatish Balay } 213397e567efSBarry Smith *v++ = 0.0; 21342d61bbb3SSatish Balay finished:; 2135cd0e1443SSatish Balay } 2136cd0e1443SSatish Balay } 21373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2138cd0e1443SSatish Balay } 2139cd0e1443SSatish Balay 2140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is) 2141d71ae5a4SJacob Faibussowitsch { 214292c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2143e2ee6c50SBarry Smith PetscInt *rp, k, low, high, t, ii, jj, row, nrow, i, col, l, rmax, N, lastcol = -1; 2144c1ac3661SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 2145d0f46423SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs, stepval; 2146ace3abfcSBarry Smith PetscBool roworiented = a->roworiented; 2147dd6ea824SBarry Smith const PetscScalar *value = v; 21489d243f67SHong Zhang MatScalar *ap = NULL, *aa = a->a, *bap; 214992c4ed94SBarry Smith 21503a40ed3dSBarry Smith PetscFunctionBegin; 21510e324ae4SSatish Balay if (roworiented) { 21520e324ae4SSatish Balay stepval = (n - 1) * bs; 21530e324ae4SSatish Balay } else { 21540e324ae4SSatish Balay stepval = (m - 1) * bs; 21550e324ae4SSatish Balay } 215692c4ed94SBarry Smith for (k = 0; k < m; k++) { /* loop over added rows */ 215792c4ed94SBarry Smith row = im[k]; 21585ef9f2a5SBarry Smith if (row < 0) continue; 21596bdcaf15SBarry Smith PetscCheck(row < a->mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block row index too large %" PetscInt_FMT " max %" PetscInt_FMT, row, a->mbs - 1); 216092c4ed94SBarry Smith rp = aj + ai[row]; 21617dc0baabSHong Zhang if (!A->structure_only) ap = aa + bs2 * ai[row]; 216292c4ed94SBarry Smith rmax = imax[row]; 216392c4ed94SBarry Smith nrow = ailen[row]; 216492c4ed94SBarry Smith low = 0; 2165c71e6ed7SBarry Smith high = nrow; 216692c4ed94SBarry Smith for (l = 0; l < n; l++) { /* loop over added columns */ 21675ef9f2a5SBarry Smith if (in[l] < 0) continue; 21686bdcaf15SBarry Smith PetscCheck(in[l] < a->nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block column index too large %" PetscInt_FMT " max %" PetscInt_FMT, in[l], a->nbs - 1); 216992c4ed94SBarry Smith col = in[l]; 21707dc0baabSHong Zhang if (!A->structure_only) { 217192c4ed94SBarry Smith if (roworiented) { 217253ef36baSBarry Smith value = v + (k * (stepval + bs) + l) * bs; 21730e324ae4SSatish Balay } else { 217453ef36baSBarry Smith value = v + (l * (stepval + bs) + k) * bs; 217592c4ed94SBarry Smith } 21767dc0baabSHong Zhang } 217726fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 217826fbe8dcSKarl Rupp else high = nrow; 2179e2ee6c50SBarry Smith lastcol = col; 218092c4ed94SBarry Smith while (high - low > 7) { 218192c4ed94SBarry Smith t = (low + high) / 2; 218292c4ed94SBarry Smith if (rp[t] > col) high = t; 218392c4ed94SBarry Smith else low = t; 218492c4ed94SBarry Smith } 218592c4ed94SBarry Smith for (i = low; i < high; i++) { 218692c4ed94SBarry Smith if (rp[i] > col) break; 218792c4ed94SBarry Smith if (rp[i] == col) { 21887dc0baabSHong Zhang if (A->structure_only) goto noinsert2; 21898a84c255SSatish Balay bap = ap + bs2 * i; 21900e324ae4SSatish Balay if (roworiented) { 21918a84c255SSatish Balay if (is == ADD_VALUES) { 2192dd9472c6SBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 2193ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 2194dd9472c6SBarry Smith } 21950e324ae4SSatish Balay } else { 2196dd9472c6SBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 2197ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 2198dd9472c6SBarry Smith } 2199dd9472c6SBarry Smith } 22000e324ae4SSatish Balay } else { 22010e324ae4SSatish Balay if (is == ADD_VALUES) { 220253ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 2203ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 220453ef36baSBarry Smith bap += bs; 2205dd9472c6SBarry Smith } 22060e324ae4SSatish Balay } else { 220753ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 2208ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 220953ef36baSBarry Smith bap += bs; 22108a84c255SSatish Balay } 2211dd9472c6SBarry Smith } 2212dd9472c6SBarry Smith } 2213f1241b54SBarry Smith goto noinsert2; 221492c4ed94SBarry Smith } 221592c4ed94SBarry Smith } 221689280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 22175f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked index new nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 22187dc0baabSHong Zhang if (A->structure_only) { 22197dc0baabSHong Zhang MatSeqXAIJReallocateAIJ_structure_only(A, a->mbs, bs2, nrow, row, col, rmax, ai, aj, rp, imax, nonew, MatScalar); 22207dc0baabSHong Zhang } else { 2221fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 22227dc0baabSHong Zhang } 22239371c9d4SSatish Balay N = nrow++ - 1; 22249371c9d4SSatish Balay high++; 222592c4ed94SBarry Smith /* shift up all the later entries in this row */ 22269566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 222792c4ed94SBarry Smith rp[i] = col; 22287dc0baabSHong Zhang if (!A->structure_only) { 22299566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 22308a84c255SSatish Balay bap = ap + bs2 * i; 22310e324ae4SSatish Balay if (roworiented) { 2232dd9472c6SBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 2233ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 2234dd9472c6SBarry Smith } 22350e324ae4SSatish Balay } else { 2236dd9472c6SBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 2237ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 2238dd9472c6SBarry Smith } 2239dd9472c6SBarry Smith } 22407dc0baabSHong Zhang } 2241f1241b54SBarry Smith noinsert2:; 224292c4ed94SBarry Smith low = i; 224392c4ed94SBarry Smith } 224492c4ed94SBarry Smith ailen[row] = nrow; 224592c4ed94SBarry Smith } 22463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 224792c4ed94SBarry Smith } 224826e093fcSHong Zhang 2249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A, MatAssemblyType mode) 2250d71ae5a4SJacob Faibussowitsch { 2251584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2252580bdb30SBarry Smith PetscInt fshift = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax; 2253d0f46423SBarry Smith PetscInt m = A->rmap->N, *ip, N, *ailen = a->ilen; 2254c1ac3661SBarry Smith PetscInt mbs = a->mbs, bs2 = a->bs2, rmax = 0; 22553f1db9ecSBarry Smith MatScalar *aa = a->a, *ap; 22563447b6efSHong Zhang PetscReal ratio = 0.6; 2257584200bdSSatish Balay 22583a40ed3dSBarry Smith PetscFunctionBegin; 2259d32568d8SPierre Jolivet if (mode == MAT_FLUSH_ASSEMBLY || (A->was_assembled && A->ass_nonzerostate == A->nonzerostate)) PetscFunctionReturn(PETSC_SUCCESS); 2260584200bdSSatish Balay 226143ee02c3SBarry Smith if (m) rmax = ailen[0]; 2262584200bdSSatish Balay for (i = 1; i < mbs; i++) { 2263584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 2264584200bdSSatish Balay fshift += imax[i - 1] - ailen[i - 1]; 2265d402145bSBarry Smith rmax = PetscMax(rmax, ailen[i]); 2266584200bdSSatish Balay if (fshift) { 2267580bdb30SBarry Smith ip = aj + ai[i]; 2268580bdb30SBarry Smith ap = aa + bs2 * ai[i]; 2269584200bdSSatish Balay N = ailen[i]; 22709566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ip - fshift, ip, N)); 227148a46eb9SPierre Jolivet if (!A->structure_only) PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2 * N)); 2272672ba085SHong Zhang } 2273584200bdSSatish Balay ai[i] = ai[i - 1] + ailen[i - 1]; 2274584200bdSSatish Balay } 2275584200bdSSatish Balay if (mbs) { 2276584200bdSSatish Balay fshift += imax[mbs - 1] - ailen[mbs - 1]; 2277584200bdSSatish Balay ai[mbs] = ai[mbs - 1] + ailen[mbs - 1]; 2278584200bdSSatish Balay } 22797c565772SBarry Smith 2280584200bdSSatish Balay /* reset ilen and imax for each row */ 22817c565772SBarry Smith a->nonzerorowcnt = 0; 2282672ba085SHong Zhang if (A->structure_only) { 22839566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->imax, a->ilen)); 2284672ba085SHong Zhang } else { /* !A->structure_only */ 2285584200bdSSatish Balay for (i = 0; i < mbs; i++) { 2286584200bdSSatish Balay ailen[i] = imax[i] = ai[i + 1] - ai[i]; 22877c565772SBarry Smith a->nonzerorowcnt += ((ai[i + 1] - ai[i]) > 0); 2288584200bdSSatish Balay } 2289672ba085SHong Zhang } 2290a7c10996SSatish Balay a->nz = ai[mbs]; 2291584200bdSSatish Balay 2292584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 2293b01c7715SBarry Smith a->idiagvalid = PETSC_FALSE; 2294ff6a9541SJacob Faibussowitsch if (fshift && a->diag) PetscCall(PetscFree(a->diag)); 22955f80ce2aSJacob Faibussowitsch if (fshift) PetscCheck(a->nounused != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unused space detected in matrix: %" PetscInt_FMT " X %" PetscInt_FMT " block size %" PetscInt_FMT ", %" PetscInt_FMT " unneeded", m, A->cmap->n, A->rmap->bs, fshift * bs2); 22969566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT ", block size %" PetscInt_FMT "; storage space: %" PetscInt_FMT " unneeded, %" PetscInt_FMT " used\n", m, A->cmap->n, A->rmap->bs, fshift * bs2, a->nz * bs2)); 22979566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues is %" PetscInt_FMT "\n", a->reallocs)); 22989566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Most nonzeros blocks in any row is %" PetscInt_FMT "\n", rmax)); 229926fbe8dcSKarl Rupp 23008e58a170SBarry Smith A->info.mallocs += a->reallocs; 2301e2f3b5e9SSatish Balay a->reallocs = 0; 23020e6d2581SBarry Smith A->info.nz_unneeded = (PetscReal)fshift * bs2; 2303647a6520SHong Zhang a->rmax = rmax; 2304cf4441caSHong Zhang 230548a46eb9SPierre Jolivet if (!A->structure_only) PetscCall(MatCheckCompressedRow(A, a->nonzerorowcnt, &a->compressedrow, a->i, mbs, ratio)); 23063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2307584200bdSSatish Balay } 2308584200bdSSatish Balay 2309bea157c4SSatish Balay /* 2310bea157c4SSatish Balay This function returns an array of flags which indicate the locations of contiguous 2311bea157c4SSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 2312a5b23f4aSJose E. Roman then the resulting sizes = [3,1,1,3,1] corresponding to sets [(0,1,2),(3),(5),(6,7,8),(9)] 2313bea157c4SSatish Balay Assume: sizes should be long enough to hold all the values. 2314bea157c4SSatish Balay */ 2315d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[], PetscInt n, PetscInt bs, PetscInt sizes[], PetscInt *bs_max) 2316d71ae5a4SJacob Faibussowitsch { 2317ff6a9541SJacob Faibussowitsch PetscInt j = 0; 23183a40ed3dSBarry Smith 2319433994e6SBarry Smith PetscFunctionBegin; 2320ff6a9541SJacob Faibussowitsch for (PetscInt i = 0; i < n; j++) { 2321ff6a9541SJacob Faibussowitsch PetscInt row = idx[i]; 2322a5b23f4aSJose E. Roman if (row % bs != 0) { /* Not the beginning of a block */ 2323bea157c4SSatish Balay sizes[j] = 1; 2324bea157c4SSatish Balay i++; 2325e4fda26cSSatish Balay } else if (i + bs > n) { /* complete block doesn't exist (at idx end) */ 2326bea157c4SSatish Balay sizes[j] = 1; /* Also makes sure at least 'bs' values exist for next else */ 2327bea157c4SSatish Balay i++; 23286aad120cSJose E. Roman } else { /* Beginning of the block, so check if the complete block exists */ 2329ff6a9541SJacob Faibussowitsch PetscBool flg = PETSC_TRUE; 2330ff6a9541SJacob Faibussowitsch for (PetscInt k = 1; k < bs; k++) { 2331bea157c4SSatish Balay if (row + k != idx[i + k]) { /* break in the block */ 2332bea157c4SSatish Balay flg = PETSC_FALSE; 2333bea157c4SSatish Balay break; 2334d9b7c43dSSatish Balay } 2335bea157c4SSatish Balay } 2336abc0a331SBarry Smith if (flg) { /* No break in the bs */ 2337bea157c4SSatish Balay sizes[j] = bs; 2338bea157c4SSatish Balay i += bs; 2339bea157c4SSatish Balay } else { 2340bea157c4SSatish Balay sizes[j] = 1; 2341bea157c4SSatish Balay i++; 2342bea157c4SSatish Balay } 2343bea157c4SSatish Balay } 2344bea157c4SSatish Balay } 2345bea157c4SSatish Balay *bs_max = j; 23463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2347d9b7c43dSSatish Balay } 2348d9b7c43dSSatish Balay 2349d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_SeqBAIJ(Mat A, PetscInt is_n, const PetscInt is_idx[], PetscScalar diag, Vec x, Vec b) 2350d71ae5a4SJacob Faibussowitsch { 2351d9b7c43dSSatish Balay Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)A->data; 2352f4df32b1SMatthew Knepley PetscInt i, j, k, count, *rows; 2353d0f46423SBarry Smith PetscInt bs = A->rmap->bs, bs2 = baij->bs2, *sizes, row, bs_max; 235487828ca2SBarry Smith PetscScalar zero = 0.0; 23553f1db9ecSBarry Smith MatScalar *aa; 235697b48c8fSBarry Smith const PetscScalar *xx; 235797b48c8fSBarry Smith PetscScalar *bb; 2358d9b7c43dSSatish Balay 23593a40ed3dSBarry Smith PetscFunctionBegin; 2360dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 236197b48c8fSBarry Smith if (x && b) { 23629566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 23639566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 2364ad540459SPierre Jolivet for (i = 0; i < is_n; i++) bb[is_idx[i]] = diag * xx[is_idx[i]]; 23659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 23669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 236797b48c8fSBarry Smith } 236897b48c8fSBarry Smith 2369d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 2370bea157c4SSatish Balay /* allocate memory for rows,sizes */ 23719566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(is_n, &rows, 2 * is_n, &sizes)); 2372bea157c4SSatish Balay 2373563b5814SBarry Smith /* copy IS values to rows, and sort them */ 237426fbe8dcSKarl Rupp for (i = 0; i < is_n; i++) rows[i] = is_idx[i]; 23759566063dSJacob Faibussowitsch PetscCall(PetscSortInt(is_n, rows)); 237697b48c8fSBarry Smith 2377a9817697SBarry Smith if (baij->keepnonzeropattern) { 237826fbe8dcSKarl Rupp for (i = 0; i < is_n; i++) sizes[i] = 1; 2379dffd3267SBarry Smith bs_max = is_n; 2380dffd3267SBarry Smith } else { 23819566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ_Check_Blocks(rows, is_n, bs, sizes, &bs_max)); 2382e56f5c9eSBarry Smith A->nonzerostate++; 2383dffd3267SBarry Smith } 2384bea157c4SSatish Balay 2385bea157c4SSatish Balay for (i = 0, j = 0; i < bs_max; j += sizes[i], i++) { 2386bea157c4SSatish Balay row = rows[j]; 23875f80ce2aSJacob Faibussowitsch PetscCheck(row >= 0 && row <= A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "row %" PetscInt_FMT " out of range", row); 2388bea157c4SSatish Balay count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 2389f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs); 2390a9817697SBarry Smith if (sizes[i] == bs && !baij->keepnonzeropattern) { 2391d4a378daSJed Brown if (diag != (PetscScalar)0.0) { 2392bea157c4SSatish Balay if (baij->ilen[row / bs] > 0) { 2393bea157c4SSatish Balay baij->ilen[row / bs] = 1; 2394bea157c4SSatish Balay baij->j[baij->i[row / bs]] = row / bs; 239526fbe8dcSKarl Rupp 23969566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(aa, count * bs)); 2397a07cd24cSSatish Balay } 2398563b5814SBarry Smith /* Now insert all the diagonal values for this bs */ 23999927e4dfSBarry Smith for (k = 0; k < bs; k++) PetscUseTypeMethod(A, setvalues, 1, rows + j + k, 1, rows + j + k, &diag, INSERT_VALUES); 2400f4df32b1SMatthew Knepley } else { /* (diag == 0.0) */ 2401bea157c4SSatish Balay baij->ilen[row / bs] = 0; 2402f4df32b1SMatthew Knepley } /* end (diag == 0.0) */ 2403bea157c4SSatish Balay } else { /* (sizes[i] != bs) */ 24046bdcaf15SBarry Smith PetscAssert(sizes[i] == 1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal Error. Value should be 1"); 2405bea157c4SSatish Balay for (k = 0; k < count; k++) { 2406d9b7c43dSSatish Balay aa[0] = zero; 2407d9b7c43dSSatish Balay aa += bs; 2408d9b7c43dSSatish Balay } 24099927e4dfSBarry Smith if (diag != (PetscScalar)0.0) PetscUseTypeMethod(A, setvalues, 1, rows + j, 1, rows + j, &diag, INSERT_VALUES); 2410d9b7c43dSSatish Balay } 2411bea157c4SSatish Balay } 2412bea157c4SSatish Balay 24139566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, sizes)); 24149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_SeqBAIJ(A, MAT_FINAL_ASSEMBLY)); 24153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2416d9b7c43dSSatish Balay } 24171c351548SSatish Balay 2418ff6a9541SJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A, PetscInt is_n, const PetscInt is_idx[], PetscScalar diag, Vec x, Vec b) 2419d71ae5a4SJacob Faibussowitsch { 242097b48c8fSBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)A->data; 242197b48c8fSBarry Smith PetscInt i, j, k, count; 242297b48c8fSBarry Smith PetscInt bs = A->rmap->bs, bs2 = baij->bs2, row, col; 242397b48c8fSBarry Smith PetscScalar zero = 0.0; 242497b48c8fSBarry Smith MatScalar *aa; 242597b48c8fSBarry Smith const PetscScalar *xx; 242697b48c8fSBarry Smith PetscScalar *bb; 242756777dd2SBarry Smith PetscBool *zeroed, vecs = PETSC_FALSE; 242897b48c8fSBarry Smith 242997b48c8fSBarry Smith PetscFunctionBegin; 2430dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 243197b48c8fSBarry Smith if (x && b) { 24329566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 24339566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 243456777dd2SBarry Smith vecs = PETSC_TRUE; 243597b48c8fSBarry Smith } 243697b48c8fSBarry Smith 243797b48c8fSBarry Smith /* zero the columns */ 24389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(A->rmap->n, &zeroed)); 243997b48c8fSBarry Smith for (i = 0; i < is_n; i++) { 24405f80ce2aSJacob Faibussowitsch PetscCheck(is_idx[i] >= 0 && is_idx[i] < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "row %" PetscInt_FMT " out of range", is_idx[i]); 244197b48c8fSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 244297b48c8fSBarry Smith } 244397b48c8fSBarry Smith for (i = 0; i < A->rmap->N; i++) { 244497b48c8fSBarry Smith if (!zeroed[i]) { 244597b48c8fSBarry Smith row = i / bs; 244697b48c8fSBarry Smith for (j = baij->i[row]; j < baij->i[row + 1]; j++) { 244797b48c8fSBarry Smith for (k = 0; k < bs; k++) { 244897b48c8fSBarry Smith col = bs * baij->j[j] + k; 244997b48c8fSBarry Smith if (zeroed[col]) { 2450f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k; 245156777dd2SBarry Smith if (vecs) bb[i] -= aa[0] * xx[col]; 245297b48c8fSBarry Smith aa[0] = 0.0; 245397b48c8fSBarry Smith } 245497b48c8fSBarry Smith } 245597b48c8fSBarry Smith } 245656777dd2SBarry Smith } else if (vecs) bb[i] = diag * xx[i]; 245797b48c8fSBarry Smith } 24589566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroed)); 245956777dd2SBarry Smith if (vecs) { 24609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 24619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 246256777dd2SBarry Smith } 246397b48c8fSBarry Smith 246497b48c8fSBarry Smith /* zero the rows */ 246597b48c8fSBarry Smith for (i = 0; i < is_n; i++) { 246697b48c8fSBarry Smith row = is_idx[i]; 246797b48c8fSBarry Smith count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 2468f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs); 246997b48c8fSBarry Smith for (k = 0; k < count; k++) { 247097b48c8fSBarry Smith aa[0] = zero; 247197b48c8fSBarry Smith aa += bs; 247297b48c8fSBarry Smith } 2473dbbe0bcdSBarry Smith if (diag != (PetscScalar)0.0) PetscUseTypeMethod(A, setvalues, 1, &row, 1, &row, &diag, INSERT_VALUES); 247497b48c8fSBarry Smith } 24759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_SeqBAIJ(A, MAT_FINAL_ASSEMBLY)); 24763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 247797b48c8fSBarry Smith } 247897b48c8fSBarry Smith 2479d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is) 2480d71ae5a4SJacob Faibussowitsch { 24812d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2482e2ee6c50SBarry Smith PetscInt *rp, k, low, high, t, ii, row, nrow, i, col, l, rmax, N, lastcol = -1; 2483c1ac3661SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 2484d0f46423SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs = A->rmap->bs, brow, bcol; 2485c1ac3661SBarry Smith PetscInt ridx, cidx, bs2 = a->bs2; 2486ace3abfcSBarry Smith PetscBool roworiented = a->roworiented; 2487d8cdefa3SHong Zhang MatScalar *ap = NULL, value = 0.0, *aa = a->a, *bap; 24882d61bbb3SSatish Balay 24892d61bbb3SSatish Balay PetscFunctionBegin; 24902d61bbb3SSatish Balay for (k = 0; k < m; k++) { /* loop over added rows */ 2491085a36d4SBarry Smith row = im[k]; 2492085a36d4SBarry Smith brow = row / bs; 24935ef9f2a5SBarry Smith if (row < 0) continue; 24946bdcaf15SBarry Smith PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->N - 1); 24958e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); 24968e3a54c0SPierre Jolivet if (!A->structure_only) ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); 24972d61bbb3SSatish Balay rmax = imax[brow]; 24982d61bbb3SSatish Balay nrow = ailen[brow]; 24992d61bbb3SSatish Balay low = 0; 2500c71e6ed7SBarry Smith high = nrow; 25012d61bbb3SSatish Balay for (l = 0; l < n; l++) { /* loop over added columns */ 25025ef9f2a5SBarry Smith if (in[l] < 0) continue; 25036bdcaf15SBarry Smith PetscCheck(in[l] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[l], A->cmap->n - 1); 25049371c9d4SSatish Balay col = in[l]; 25059371c9d4SSatish Balay bcol = col / bs; 25069371c9d4SSatish Balay ridx = row % bs; 25079371c9d4SSatish Balay cidx = col % bs; 2508672ba085SHong Zhang if (!A->structure_only) { 25092d61bbb3SSatish Balay if (roworiented) { 25105ef9f2a5SBarry Smith value = v[l + k * n]; 25112d61bbb3SSatish Balay } else { 25122d61bbb3SSatish Balay value = v[k + l * m]; 25132d61bbb3SSatish Balay } 2514672ba085SHong Zhang } 25159371c9d4SSatish Balay if (col <= lastcol) low = 0; 25169371c9d4SSatish Balay else high = nrow; 2517e2ee6c50SBarry Smith lastcol = col; 25182d61bbb3SSatish Balay while (high - low > 7) { 25192d61bbb3SSatish Balay t = (low + high) / 2; 25202d61bbb3SSatish Balay if (rp[t] > bcol) high = t; 25212d61bbb3SSatish Balay else low = t; 25222d61bbb3SSatish Balay } 25232d61bbb3SSatish Balay for (i = low; i < high; i++) { 25242d61bbb3SSatish Balay if (rp[i] > bcol) break; 25252d61bbb3SSatish Balay if (rp[i] == bcol) { 25268e3a54c0SPierre Jolivet bap = PetscSafePointerPlusOffset(ap, bs2 * i + bs * cidx + ridx); 2527672ba085SHong Zhang if (!A->structure_only) { 25282d61bbb3SSatish Balay if (is == ADD_VALUES) *bap += value; 25292d61bbb3SSatish Balay else *bap = value; 2530672ba085SHong Zhang } 25312d61bbb3SSatish Balay goto noinsert1; 25322d61bbb3SSatish Balay } 25332d61bbb3SSatish Balay } 25342d61bbb3SSatish Balay if (nonew == 1) goto noinsert1; 25355f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 2536672ba085SHong Zhang if (A->structure_only) { 2537672ba085SHong Zhang MatSeqXAIJReallocateAIJ_structure_only(A, a->mbs, bs2, nrow, brow, bcol, rmax, ai, aj, rp, imax, nonew, MatScalar); 2538672ba085SHong Zhang } else { 2539fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 2540672ba085SHong Zhang } 25419371c9d4SSatish Balay N = nrow++ - 1; 25429371c9d4SSatish Balay high++; 25432d61bbb3SSatish Balay /* shift up all the later entries in this row */ 25449566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 25452d61bbb3SSatish Balay rp[i] = bcol; 2546580bdb30SBarry Smith if (!A->structure_only) { 25479566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 25489566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * i, bs2)); 2549580bdb30SBarry Smith ap[bs2 * i + bs * cidx + ridx] = value; 2550580bdb30SBarry Smith } 2551085a36d4SBarry Smith a->nz++; 25522d61bbb3SSatish Balay noinsert1:; 25532d61bbb3SSatish Balay low = i; 25542d61bbb3SSatish Balay } 25552d61bbb3SSatish Balay ailen[brow] = nrow; 25562d61bbb3SSatish Balay } 25573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25582d61bbb3SSatish Balay } 25592d61bbb3SSatish Balay 2560ff6a9541SJacob Faibussowitsch static PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA, IS row, IS col, const MatFactorInfo *info) 2561d71ae5a4SJacob Faibussowitsch { 25622d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inA->data; 25632d61bbb3SSatish Balay Mat outA; 2564ace3abfcSBarry Smith PetscBool row_identity, col_identity; 25652d61bbb3SSatish Balay 25662d61bbb3SSatish Balay PetscFunctionBegin; 25675f80ce2aSJacob Faibussowitsch PetscCheck(info->levels == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only levels = 0 supported for in-place ILU"); 25689566063dSJacob Faibussowitsch PetscCall(ISIdentity(row, &row_identity)); 25699566063dSJacob Faibussowitsch PetscCall(ISIdentity(col, &col_identity)); 25705f80ce2aSJacob Faibussowitsch PetscCheck(row_identity && col_identity, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Row and column permutations must be identity for in-place ILU"); 25712d61bbb3SSatish Balay 25722d61bbb3SSatish Balay outA = inA; 2573d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_LU; 25749566063dSJacob Faibussowitsch PetscCall(PetscFree(inA->solvertype)); 25759566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &inA->solvertype)); 25762d61bbb3SSatish Balay 25779566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqBAIJ(inA)); 2578cf242676SKris Buschelman 25799566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)row)); 25809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 2581c3122656SLisandro Dalcin a->row = row; 25829566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)col)); 25839566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 2584c3122656SLisandro Dalcin a->col = col; 2585c38d4ed2SBarry Smith 2586c38d4ed2SBarry Smith /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 25879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 25889566063dSJacob Faibussowitsch PetscCall(ISInvertPermutation(col, PETSC_DECIDE, &a->icol)); 2589c38d4ed2SBarry Smith 25909566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetNumericFactorization_inplace(inA, (PetscBool)(row_identity && col_identity))); 2591aa624791SPierre Jolivet if (!a->solve_work) PetscCall(PetscMalloc1(inA->rmap->N + inA->rmap->bs, &a->solve_work)); 25929566063dSJacob Faibussowitsch PetscCall(MatLUFactorNumeric(outA, inA, info)); 25933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25942d61bbb3SSatish Balay } 2595d9b7c43dSSatish Balay 2596ff6a9541SJacob Faibussowitsch static PetscErrorCode MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat, const PetscInt *indices) 2597d71ae5a4SJacob Faibussowitsch { 259827a8da17SBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data; 259927a8da17SBarry Smith 260027a8da17SBarry Smith PetscFunctionBegin; 2601ff6a9541SJacob Faibussowitsch baij->nz = baij->maxnz; 2602ff6a9541SJacob Faibussowitsch PetscCall(PetscArraycpy(baij->j, indices, baij->nz)); 2603ff6a9541SJacob Faibussowitsch PetscCall(PetscArraycpy(baij->ilen, baij->imax, baij->mbs)); 26043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260527a8da17SBarry Smith } 260627a8da17SBarry Smith 260727a8da17SBarry Smith /*@ 2608d8a51d2aSBarry Smith MatSeqBAIJSetColumnIndices - Set the column indices for all the block rows in the matrix. 260927a8da17SBarry Smith 261027a8da17SBarry Smith Input Parameters: 261111a5261eSBarry Smith + mat - the `MATSEQBAIJ` matrix 2612d8a51d2aSBarry Smith - indices - the block column indices 261327a8da17SBarry Smith 261415091d37SBarry Smith Level: advanced 261515091d37SBarry Smith 261627a8da17SBarry Smith Notes: 261727a8da17SBarry Smith This can be called if you have precomputed the nonzero structure of the 261827a8da17SBarry Smith matrix and want to provide it to the matrix object to improve the performance 261911a5261eSBarry Smith of the `MatSetValues()` operation. 262027a8da17SBarry Smith 262127a8da17SBarry Smith You MUST have set the correct numbers of nonzeros per row in the call to 262211a5261eSBarry Smith `MatCreateSeqBAIJ()`, and the columns indices MUST be sorted. 262327a8da17SBarry Smith 262411a5261eSBarry Smith MUST be called before any calls to `MatSetValues()` 262527a8da17SBarry Smith 26261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQBAIJ`, `MatSetValues()` 262727a8da17SBarry Smith @*/ 2628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqBAIJSetColumnIndices(Mat mat, PetscInt *indices) 2629d71ae5a4SJacob Faibussowitsch { 263027a8da17SBarry Smith PetscFunctionBegin; 26310700a824SBarry Smith PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 26324f572ea9SToby Isaac PetscAssertPointer(indices, 2); 2633810441c8SPierre Jolivet PetscUseMethod(mat, "MatSeqBAIJSetColumnIndices_C", (Mat, const PetscInt *), (mat, (const PetscInt *)indices)); 26343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 263527a8da17SBarry Smith } 263627a8da17SBarry Smith 263766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A, Vec v, PetscInt idx[]) 2638d71ae5a4SJacob Faibussowitsch { 2639273d9f13SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2640c1ac3661SBarry Smith PetscInt i, j, n, row, bs, *ai, *aj, mbs; 2641273d9f13SBarry Smith PetscReal atmp; 264287828ca2SBarry Smith PetscScalar *x, zero = 0.0; 2643273d9f13SBarry Smith MatScalar *aa; 2644c1ac3661SBarry Smith PetscInt ncols, brow, krow, kcol; 2645273d9f13SBarry Smith 2646273d9f13SBarry Smith PetscFunctionBegin; 26475f80ce2aSJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2648d0f46423SBarry Smith bs = A->rmap->bs; 2649273d9f13SBarry Smith aa = a->a; 2650273d9f13SBarry Smith ai = a->i; 2651273d9f13SBarry Smith aj = a->j; 2652273d9f13SBarry Smith mbs = a->mbs; 2653273d9f13SBarry Smith 26549566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero)); 26559566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 26569566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n)); 26575f80ce2aSJacob Faibussowitsch PetscCheck(n == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 2658273d9f13SBarry Smith for (i = 0; i < mbs; i++) { 26599371c9d4SSatish Balay ncols = ai[1] - ai[0]; 26609371c9d4SSatish Balay ai++; 2661273d9f13SBarry Smith brow = bs * i; 2662273d9f13SBarry Smith for (j = 0; j < ncols; j++) { 2663273d9f13SBarry Smith for (kcol = 0; kcol < bs; kcol++) { 2664273d9f13SBarry Smith for (krow = 0; krow < bs; krow++) { 26659371c9d4SSatish Balay atmp = PetscAbsScalar(*aa); 26669371c9d4SSatish Balay aa++; 2667273d9f13SBarry Smith row = brow + krow; /* row index */ 26689371c9d4SSatish Balay if (PetscAbsScalar(x[row]) < atmp) { 26699371c9d4SSatish Balay x[row] = atmp; 26709371c9d4SSatish Balay if (idx) idx[row] = bs * (*aj) + kcol; 26719371c9d4SSatish Balay } 2672273d9f13SBarry Smith } 2673273d9f13SBarry Smith } 2674273d9f13SBarry Smith aj++; 2675273d9f13SBarry Smith } 2676273d9f13SBarry Smith } 26779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 26783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2679273d9f13SBarry Smith } 2680273d9f13SBarry Smith 2681eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_SeqBAIJ(Mat A, Vec v) 2682eede4a3fSMark Adams { 2683eede4a3fSMark Adams Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2684eede4a3fSMark Adams PetscInt i, j, n, row, bs, *ai, mbs; 2685eede4a3fSMark Adams PetscReal atmp; 2686eede4a3fSMark Adams PetscScalar *x, zero = 0.0; 2687eede4a3fSMark Adams MatScalar *aa; 2688eede4a3fSMark Adams PetscInt ncols, brow, krow, kcol; 2689eede4a3fSMark Adams 2690eede4a3fSMark Adams PetscFunctionBegin; 2691eede4a3fSMark Adams PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2692eede4a3fSMark Adams bs = A->rmap->bs; 2693eede4a3fSMark Adams aa = a->a; 2694eede4a3fSMark Adams ai = a->i; 2695eede4a3fSMark Adams mbs = a->mbs; 2696eede4a3fSMark Adams 2697eede4a3fSMark Adams PetscCall(VecSet(v, zero)); 2698eede4a3fSMark Adams PetscCall(VecGetArrayWrite(v, &x)); 2699eede4a3fSMark Adams PetscCall(VecGetLocalSize(v, &n)); 2700eede4a3fSMark Adams PetscCheck(n == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 2701eede4a3fSMark Adams for (i = 0; i < mbs; i++) { 2702eede4a3fSMark Adams ncols = ai[1] - ai[0]; 2703eede4a3fSMark Adams ai++; 2704eede4a3fSMark Adams brow = bs * i; 2705eede4a3fSMark Adams for (j = 0; j < ncols; j++) { 2706eede4a3fSMark Adams for (kcol = 0; kcol < bs; kcol++) { 2707eede4a3fSMark Adams for (krow = 0; krow < bs; krow++) { 2708eede4a3fSMark Adams atmp = PetscAbsScalar(*aa); 2709eede4a3fSMark Adams aa++; 2710eede4a3fSMark Adams row = brow + krow; /* row index */ 2711eede4a3fSMark Adams x[row] += atmp; 2712eede4a3fSMark Adams } 2713eede4a3fSMark Adams } 2714eede4a3fSMark Adams } 2715eede4a3fSMark Adams } 2716eede4a3fSMark Adams PetscCall(VecRestoreArrayWrite(v, &x)); 2717eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2718eede4a3fSMark Adams } 2719eede4a3fSMark Adams 272066976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_SeqBAIJ(Mat A, Mat B, MatStructure str) 2721d71ae5a4SJacob Faibussowitsch { 27223c896bc6SHong Zhang PetscFunctionBegin; 27233c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 27243c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 27253c896bc6SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 27263c896bc6SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 2727d88c0aacSHong Zhang PetscInt ambs = a->mbs, bmbs = b->mbs, abs = A->rmap->bs, bbs = B->rmap->bs, bs2 = abs * abs; 27283c896bc6SHong Zhang 27295f80ce2aSJacob Faibussowitsch PetscCheck(a->i[ambs] == b->i[bmbs], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzero blocks in matrices A %" PetscInt_FMT " and B %" PetscInt_FMT " are different", a->i[ambs], b->i[bmbs]); 27305f80ce2aSJacob Faibussowitsch PetscCheck(abs == bbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Block size A %" PetscInt_FMT " and B %" PetscInt_FMT " are different", abs, bbs); 27319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->a, a->a, bs2 * a->i[ambs])); 27329566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 27333c896bc6SHong Zhang } else { 27349566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 27353c896bc6SHong Zhang } 27363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27373c896bc6SHong Zhang } 27383c896bc6SHong Zhang 2739d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A, PetscScalar *array[]) 2740d71ae5a4SJacob Faibussowitsch { 2741f2a5309cSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 27426e111a19SKarl Rupp 2743f2a5309cSSatish Balay PetscFunctionBegin; 2744f2a5309cSSatish Balay *array = a->a; 27453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2746f2a5309cSSatish Balay } 2747f2a5309cSSatish Balay 2748d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A, PetscScalar *array[]) 2749d71ae5a4SJacob Faibussowitsch { 2750f2a5309cSSatish Balay PetscFunctionBegin; 2751cda14afcSprj- *array = NULL; 27523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2753f2a5309cSSatish Balay } 2754f2a5309cSSatish Balay 2755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_SeqBAIJ(Mat Y, Mat X, PetscInt *nnz) 2756d71ae5a4SJacob Faibussowitsch { 2757b264fe52SHong Zhang PetscInt bs = Y->rmap->bs, mbs = Y->rmap->N / bs; 275852768537SHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 275952768537SHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 276052768537SHong Zhang 276152768537SHong Zhang PetscFunctionBegin; 276252768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 27639566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqX_private(mbs, x->i, x->j, y->i, y->j, nnz)); 27643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 276552768537SHong Zhang } 276652768537SHong Zhang 2767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_SeqBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2768d71ae5a4SJacob Faibussowitsch { 276942ee4b1aSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data, *y = (Mat_SeqBAIJ *)Y->data; 277031ce2d13SHong Zhang PetscInt bs = Y->rmap->bs, bs2 = bs * bs; 2771e838b9e7SJed Brown PetscBLASInt one = 1; 277242ee4b1aSHong Zhang 277342ee4b1aSHong Zhang PetscFunctionBegin; 2774134adf20SPierre Jolivet if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) { 2775134adf20SPierre Jolivet PetscBool e = x->nz == y->nz && x->mbs == y->mbs && bs == X->rmap->bs ? PETSC_TRUE : PETSC_FALSE; 2776134adf20SPierre Jolivet if (e) { 27779566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->i, y->i, x->mbs + 1, &e)); 2778134adf20SPierre Jolivet if (e) { 27799566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->j, y->j, x->i[x->mbs], &e)); 2780134adf20SPierre Jolivet if (e) str = SAME_NONZERO_PATTERN; 2781134adf20SPierre Jolivet } 2782134adf20SPierre Jolivet } 278354c59aa7SJacob Faibussowitsch if (!e) PetscCheck(str != SAME_NONZERO_PATTERN, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MatStructure is not SAME_NONZERO_PATTERN"); 2784134adf20SPierre Jolivet } 278542ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 2786f4df32b1SMatthew Knepley PetscScalar alpha = a; 2787c5df96a5SBarry Smith PetscBLASInt bnz; 27889566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 2789792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 27909566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 2791ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 27929566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 279342ee4b1aSHong Zhang } else { 279452768537SHong Zhang Mat B; 279552768537SHong Zhang PetscInt *nnz; 279654c59aa7SJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 27979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Y->rmap->N, &nnz)); 27989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 27999566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 28009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 28019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 28029566063dSJacob Faibussowitsch PetscCall(MatSetType(B, (MatType)((PetscObject)Y)->type_name)); 28039566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(Y, X, nnz)); 28049566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(B, bs, 0, nnz)); 28059566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 28069566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 28079566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 280842ee4b1aSHong Zhang } 28093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 281042ee4b1aSHong Zhang } 281142ee4b1aSHong Zhang 2812d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConjugate_SeqBAIJ(Mat A) 2813d71ae5a4SJacob Faibussowitsch { 2814ff6a9541SJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 28152726fb6dSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 28162726fb6dSPierre Jolivet PetscInt i, nz = a->bs2 * a->i[a->mbs]; 28172726fb6dSPierre Jolivet MatScalar *aa = a->a; 28182726fb6dSPierre Jolivet 28192726fb6dSPierre Jolivet PetscFunctionBegin; 28202726fb6dSPierre Jolivet for (i = 0; i < nz; i++) aa[i] = PetscConj(aa[i]); 28213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2822ff6a9541SJacob Faibussowitsch #else 2823ff6a9541SJacob Faibussowitsch (void)A; 2824ff6a9541SJacob Faibussowitsch return PETSC_SUCCESS; 2825ff6a9541SJacob Faibussowitsch #endif 28262726fb6dSPierre Jolivet } 28272726fb6dSPierre Jolivet 2828ff6a9541SJacob Faibussowitsch static PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 2829d71ae5a4SJacob Faibussowitsch { 2830ff6a9541SJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 283199cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 283299cafbc1SBarry Smith PetscInt i, nz = a->bs2 * a->i[a->mbs]; 2833dd6ea824SBarry Smith MatScalar *aa = a->a; 283499cafbc1SBarry Smith 283599cafbc1SBarry Smith PetscFunctionBegin; 283699cafbc1SBarry Smith for (i = 0; i < nz; i++) aa[i] = PetscRealPart(aa[i]); 28373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2838ff6a9541SJacob Faibussowitsch #else 2839ff6a9541SJacob Faibussowitsch (void)A; 2840ff6a9541SJacob Faibussowitsch return PETSC_SUCCESS; 2841ff6a9541SJacob Faibussowitsch #endif 284299cafbc1SBarry Smith } 284399cafbc1SBarry Smith 2844ff6a9541SJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 2845d71ae5a4SJacob Faibussowitsch { 2846ff6a9541SJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 284799cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 284899cafbc1SBarry Smith PetscInt i, nz = a->bs2 * a->i[a->mbs]; 2849dd6ea824SBarry Smith MatScalar *aa = a->a; 285099cafbc1SBarry Smith 285199cafbc1SBarry Smith PetscFunctionBegin; 285299cafbc1SBarry Smith for (i = 0; i < nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 28533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2854ff6a9541SJacob Faibussowitsch #else 2855ff6a9541SJacob Faibussowitsch (void)A; 2856ff6a9541SJacob Faibussowitsch return PETSC_SUCCESS; 2857ff6a9541SJacob Faibussowitsch #endif 285899cafbc1SBarry Smith } 285999cafbc1SBarry Smith 28603acb8795SBarry Smith /* 28612479783cSJose E. Roman Code almost identical to MatGetColumnIJ_SeqAIJ() should share common code 28623acb8795SBarry Smith */ 2863ff6a9541SJacob Faibussowitsch static PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 2864d71ae5a4SJacob Faibussowitsch { 28653acb8795SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 28663acb8795SBarry Smith PetscInt bs = A->rmap->bs, i, *collengths, *cia, *cja, n = A->cmap->n / bs, m = A->rmap->n / bs; 28673acb8795SBarry Smith PetscInt nz = a->i[m], row, *jj, mr, col; 28683acb8795SBarry Smith 28693acb8795SBarry Smith PetscFunctionBegin; 28703acb8795SBarry Smith *nn = n; 28713ba16761SJacob Faibussowitsch if (!ia) PetscFunctionReturn(PETSC_SUCCESS); 28725f80ce2aSJacob Faibussowitsch PetscCheck(!symmetric, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not for BAIJ matrices"); 28739566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &collengths)); 28749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n + 1, &cia)); 28759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &cja)); 28763acb8795SBarry Smith jj = a->j; 2877ad540459SPierre Jolivet for (i = 0; i < nz; i++) collengths[jj[i]]++; 28783acb8795SBarry Smith cia[0] = oshift; 2879ad540459SPierre Jolivet for (i = 0; i < n; i++) cia[i + 1] = cia[i] + collengths[i]; 28809566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(collengths, n)); 28813acb8795SBarry Smith jj = a->j; 28823acb8795SBarry Smith for (row = 0; row < m; row++) { 28833acb8795SBarry Smith mr = a->i[row + 1] - a->i[row]; 28843acb8795SBarry Smith for (i = 0; i < mr; i++) { 28853acb8795SBarry Smith col = *jj++; 288626fbe8dcSKarl Rupp 28873acb8795SBarry Smith cja[cia[col] + collengths[col]++ - oshift] = row + oshift; 28883acb8795SBarry Smith } 28893acb8795SBarry Smith } 28909566063dSJacob Faibussowitsch PetscCall(PetscFree(collengths)); 28919371c9d4SSatish Balay *ia = cia; 28929371c9d4SSatish Balay *ja = cja; 28933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28943acb8795SBarry Smith } 28953acb8795SBarry Smith 2896ff6a9541SJacob Faibussowitsch static PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 2897d71ae5a4SJacob Faibussowitsch { 28983acb8795SBarry Smith PetscFunctionBegin; 28993ba16761SJacob Faibussowitsch if (!ia) PetscFunctionReturn(PETSC_SUCCESS); 29009566063dSJacob Faibussowitsch PetscCall(PetscFree(*ia)); 29019566063dSJacob Faibussowitsch PetscCall(PetscFree(*ja)); 29023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29033acb8795SBarry Smith } 29043acb8795SBarry Smith 2905525d23c0SHong Zhang /* 2906525d23c0SHong Zhang MatGetColumnIJ_SeqBAIJ_Color() and MatRestoreColumnIJ_SeqBAIJ_Color() are customized from 2907525d23c0SHong Zhang MatGetColumnIJ_SeqBAIJ() and MatRestoreColumnIJ_SeqBAIJ() by adding an output 2908040ebd07SHong Zhang spidx[], index of a->a, to be used in MatTransposeColoringCreate() and MatFDColoringCreate() 2909525d23c0SHong Zhang */ 2910d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnIJ_SeqBAIJ_Color(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscInt *spidx[], PetscBool *done) 2911d71ae5a4SJacob Faibussowitsch { 2912525d23c0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2913c0349474SHong Zhang PetscInt i, *collengths, *cia, *cja, n = a->nbs, m = a->mbs; 2914525d23c0SHong Zhang PetscInt nz = a->i[m], row, *jj, mr, col; 2915525d23c0SHong Zhang PetscInt *cspidx; 2916f6d58c54SBarry Smith 2917f6d58c54SBarry Smith PetscFunctionBegin; 2918525d23c0SHong Zhang *nn = n; 29193ba16761SJacob Faibussowitsch if (!ia) PetscFunctionReturn(PETSC_SUCCESS); 2920f6d58c54SBarry Smith 29219566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &collengths)); 29229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n + 1, &cia)); 29239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &cja)); 29249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &cspidx)); 2925525d23c0SHong Zhang jj = a->j; 2926ad540459SPierre Jolivet for (i = 0; i < nz; i++) collengths[jj[i]]++; 2927525d23c0SHong Zhang cia[0] = oshift; 2928ad540459SPierre Jolivet for (i = 0; i < n; i++) cia[i + 1] = cia[i] + collengths[i]; 29299566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(collengths, n)); 2930525d23c0SHong Zhang jj = a->j; 2931525d23c0SHong Zhang for (row = 0; row < m; row++) { 2932525d23c0SHong Zhang mr = a->i[row + 1] - a->i[row]; 2933525d23c0SHong Zhang for (i = 0; i < mr; i++) { 2934525d23c0SHong Zhang col = *jj++; 2935525d23c0SHong Zhang cspidx[cia[col] + collengths[col] - oshift] = a->i[row] + i; /* index of a->j */ 2936525d23c0SHong Zhang cja[cia[col] + collengths[col]++ - oshift] = row + oshift; 2937525d23c0SHong Zhang } 2938525d23c0SHong Zhang } 29399566063dSJacob Faibussowitsch PetscCall(PetscFree(collengths)); 2940071fcb05SBarry Smith *ia = cia; 2941071fcb05SBarry Smith *ja = cja; 2942525d23c0SHong Zhang *spidx = cspidx; 29433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2944f6d58c54SBarry Smith } 2945f6d58c54SBarry Smith 2946d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreColumnIJ_SeqBAIJ_Color(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscInt *spidx[], PetscBool *done) 2947d71ae5a4SJacob Faibussowitsch { 2948525d23c0SHong Zhang PetscFunctionBegin; 29499566063dSJacob Faibussowitsch PetscCall(MatRestoreColumnIJ_SeqBAIJ(A, oshift, symmetric, inodecompressed, n, ia, ja, done)); 29509566063dSJacob Faibussowitsch PetscCall(PetscFree(*spidx)); 29513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2952f6d58c54SBarry Smith } 295399cafbc1SBarry Smith 295466976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_SeqBAIJ(Mat Y, PetscScalar a) 2955d71ae5a4SJacob Faibussowitsch { 29567d68702bSBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)Y->data; 29577d68702bSBarry Smith 29587d68702bSBarry Smith PetscFunctionBegin; 295948a46eb9SPierre Jolivet if (!Y->preallocated || !aij->nz) PetscCall(MatSeqBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL)); 29609566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 29613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29627d68702bSBarry Smith } 29637d68702bSBarry Smith 296417ea310bSPierre Jolivet PetscErrorCode MatEliminateZeros_SeqBAIJ(Mat A, PetscBool keep) 296517ea310bSPierre Jolivet { 296617ea310bSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 296717ea310bSPierre Jolivet PetscInt fshift = 0, fshift_prev = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax, j, k; 296817ea310bSPierre Jolivet PetscInt m = A->rmap->N, *ailen = a->ilen; 296917ea310bSPierre Jolivet PetscInt mbs = a->mbs, bs2 = a->bs2, rmax = 0; 297017ea310bSPierre Jolivet MatScalar *aa = a->a, *ap; 297117ea310bSPierre Jolivet PetscBool zero; 297217ea310bSPierre Jolivet 297317ea310bSPierre Jolivet PetscFunctionBegin; 297417ea310bSPierre Jolivet PetscCheck(A->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot eliminate zeros for unassembled matrix"); 297517ea310bSPierre Jolivet if (m) rmax = ailen[0]; 297617ea310bSPierre Jolivet for (i = 1; i <= mbs; i++) { 297717ea310bSPierre Jolivet for (k = ai[i - 1]; k < ai[i]; k++) { 297817ea310bSPierre Jolivet zero = PETSC_TRUE; 297917ea310bSPierre Jolivet ap = aa + bs2 * k; 298017ea310bSPierre Jolivet for (j = 0; j < bs2 && zero; j++) { 298117ea310bSPierre Jolivet if (ap[j] != 0.0) zero = PETSC_FALSE; 298217ea310bSPierre Jolivet } 298317ea310bSPierre Jolivet if (zero && (aj[k] != i - 1 || !keep)) fshift++; 298417ea310bSPierre Jolivet else { 298517ea310bSPierre Jolivet if (zero && aj[k] == i - 1) PetscCall(PetscInfo(A, "Keep the diagonal block at row %" PetscInt_FMT "\n", i - 1)); 298617ea310bSPierre Jolivet aj[k - fshift] = aj[k]; 298717ea310bSPierre Jolivet PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2)); 298817ea310bSPierre Jolivet } 298917ea310bSPierre Jolivet } 299017ea310bSPierre Jolivet ai[i - 1] -= fshift_prev; 299117ea310bSPierre Jolivet fshift_prev = fshift; 299217ea310bSPierre Jolivet ailen[i - 1] = imax[i - 1] = ai[i] - fshift - ai[i - 1]; 299317ea310bSPierre Jolivet a->nonzerorowcnt += ((ai[i] - fshift - ai[i - 1]) > 0); 299417ea310bSPierre Jolivet rmax = PetscMax(rmax, ailen[i - 1]); 299517ea310bSPierre Jolivet } 299617ea310bSPierre Jolivet if (fshift) { 299717ea310bSPierre Jolivet if (mbs) { 299817ea310bSPierre Jolivet ai[mbs] -= fshift; 299917ea310bSPierre Jolivet a->nz = ai[mbs]; 300017ea310bSPierre Jolivet } 300117ea310bSPierre Jolivet PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; zeros eliminated: %" PetscInt_FMT "; nonzeros left: %" PetscInt_FMT "\n", m, A->cmap->n, fshift, a->nz)); 300217ea310bSPierre Jolivet A->nonzerostate++; 300317ea310bSPierre Jolivet A->info.nz_unneeded += (PetscReal)fshift; 300417ea310bSPierre Jolivet a->rmax = rmax; 300517ea310bSPierre Jolivet PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 300617ea310bSPierre Jolivet PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 300717ea310bSPierre Jolivet } 300817ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 300917ea310bSPierre Jolivet } 301017ea310bSPierre Jolivet 3011dec0b466SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 3012cc2dc46cSBarry Smith MatGetRow_SeqBAIJ, 3013cc2dc46cSBarry Smith MatRestoreRow_SeqBAIJ, 3014cc2dc46cSBarry Smith MatMult_SeqBAIJ_N, 301597304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N, 30167c922b88SBarry Smith MatMultTranspose_SeqBAIJ, 30177c922b88SBarry Smith MatMultTransposeAdd_SeqBAIJ, 3018f4259b30SLisandro Dalcin NULL, 3019f4259b30SLisandro Dalcin NULL, 3020f4259b30SLisandro Dalcin NULL, 3021f4259b30SLisandro Dalcin /* 10*/ NULL, 3022cc2dc46cSBarry Smith MatLUFactor_SeqBAIJ, 3023f4259b30SLisandro Dalcin NULL, 3024f4259b30SLisandro Dalcin NULL, 3025f2501298SSatish Balay MatTranspose_SeqBAIJ, 302697304618SKris Buschelman /* 15*/ MatGetInfo_SeqBAIJ, 3027cc2dc46cSBarry Smith MatEqual_SeqBAIJ, 3028cc2dc46cSBarry Smith MatGetDiagonal_SeqBAIJ, 3029cc2dc46cSBarry Smith MatDiagonalScale_SeqBAIJ, 3030cc2dc46cSBarry Smith MatNorm_SeqBAIJ, 3031f4259b30SLisandro Dalcin /* 20*/ NULL, 3032cc2dc46cSBarry Smith MatAssemblyEnd_SeqBAIJ, 3033cc2dc46cSBarry Smith MatSetOption_SeqBAIJ, 3034cc2dc46cSBarry Smith MatZeroEntries_SeqBAIJ, 3035d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqBAIJ, 3036f4259b30SLisandro Dalcin NULL, 3037f4259b30SLisandro Dalcin NULL, 3038f4259b30SLisandro Dalcin NULL, 3039f4259b30SLisandro Dalcin NULL, 304026cec326SBarry Smith /* 29*/ MatSetUp_Seq_Hash, 3041f4259b30SLisandro Dalcin NULL, 3042f4259b30SLisandro Dalcin NULL, 3043f4259b30SLisandro Dalcin NULL, 3044f4259b30SLisandro Dalcin NULL, 3045d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqBAIJ, 3046f4259b30SLisandro Dalcin NULL, 3047f4259b30SLisandro Dalcin NULL, 3048cc2dc46cSBarry Smith MatILUFactor_SeqBAIJ, 3049f4259b30SLisandro Dalcin NULL, 3050d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqBAIJ, 30517dae84e0SHong Zhang MatCreateSubMatrices_SeqBAIJ, 3052cc2dc46cSBarry Smith MatIncreaseOverlap_SeqBAIJ, 3053cc2dc46cSBarry Smith MatGetValues_SeqBAIJ, 30543c896bc6SHong Zhang MatCopy_SeqBAIJ, 3055f4259b30SLisandro Dalcin /* 44*/ NULL, 3056cc2dc46cSBarry Smith MatScale_SeqBAIJ, 30577d68702bSBarry Smith MatShift_SeqBAIJ, 3058f4259b30SLisandro Dalcin NULL, 305997b48c8fSBarry Smith MatZeroRowsColumns_SeqBAIJ, 3060f4259b30SLisandro Dalcin /* 49*/ NULL, 30613b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 306292c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 30633acb8795SBarry Smith MatGetColumnIJ_SeqBAIJ, 30643acb8795SBarry Smith MatRestoreColumnIJ_SeqBAIJ, 306593dfae19SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 3066f4259b30SLisandro Dalcin NULL, 3067f4259b30SLisandro Dalcin NULL, 3068090001bdSToby Isaac NULL, 3069d3825aa8SBarry Smith MatSetValuesBlocked_SeqBAIJ, 30707dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_SeqBAIJ, 3071b9b97703SBarry Smith MatDestroy_SeqBAIJ, 3072b9b97703SBarry Smith MatView_SeqBAIJ, 3073f4259b30SLisandro Dalcin NULL, 3074f4259b30SLisandro Dalcin NULL, 3075f4259b30SLisandro Dalcin /* 64*/ NULL, 3076f4259b30SLisandro Dalcin NULL, 3077f4259b30SLisandro Dalcin NULL, 3078f4259b30SLisandro Dalcin NULL, 3079f4259b30SLisandro Dalcin NULL, 3080d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqBAIJ, 3081f4259b30SLisandro Dalcin NULL, 3082c87e5d42SMatthew Knepley MatConvert_Basic, 3083f4259b30SLisandro Dalcin NULL, 3084f4259b30SLisandro Dalcin NULL, 3085f4259b30SLisandro Dalcin /* 74*/ NULL, 3086f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 3087f4259b30SLisandro Dalcin NULL, 3088f4259b30SLisandro Dalcin NULL, 3089f4259b30SLisandro Dalcin NULL, 3090f4259b30SLisandro Dalcin /* 79*/ NULL, 3091f4259b30SLisandro Dalcin NULL, 3092f4259b30SLisandro Dalcin NULL, 3093f4259b30SLisandro Dalcin NULL, 30945bba2384SShri Abhyankar MatLoad_SeqBAIJ, 3095f4259b30SLisandro Dalcin /* 84*/ NULL, 3096f4259b30SLisandro Dalcin NULL, 3097f4259b30SLisandro Dalcin NULL, 3098f4259b30SLisandro Dalcin NULL, 3099f4259b30SLisandro Dalcin NULL, 3100f4259b30SLisandro Dalcin /* 89*/ NULL, 3101f4259b30SLisandro Dalcin NULL, 3102f4259b30SLisandro Dalcin NULL, 3103f4259b30SLisandro Dalcin NULL, 3104f4259b30SLisandro Dalcin NULL, 3105f4259b30SLisandro Dalcin /* 94*/ NULL, 3106f4259b30SLisandro Dalcin NULL, 3107f4259b30SLisandro Dalcin NULL, 3108f4259b30SLisandro Dalcin NULL, 3109f4259b30SLisandro Dalcin NULL, 3110f4259b30SLisandro Dalcin /* 99*/ NULL, 3111f4259b30SLisandro Dalcin NULL, 3112f4259b30SLisandro Dalcin NULL, 31132726fb6dSPierre Jolivet MatConjugate_SeqBAIJ, 3114f4259b30SLisandro Dalcin NULL, 3115f4259b30SLisandro Dalcin /*104*/ NULL, 311699cafbc1SBarry Smith MatRealPart_SeqBAIJ, 31172af78befSBarry Smith MatImaginaryPart_SeqBAIJ, 3118f4259b30SLisandro Dalcin NULL, 3119f4259b30SLisandro Dalcin NULL, 3120f4259b30SLisandro Dalcin /*109*/ NULL, 3121f4259b30SLisandro Dalcin NULL, 3122f4259b30SLisandro Dalcin NULL, 3123f4259b30SLisandro Dalcin NULL, 3124547795f9SHong Zhang MatMissingDiagonal_SeqBAIJ, 3125f4259b30SLisandro Dalcin /*114*/ NULL, 3126f4259b30SLisandro Dalcin NULL, 3127f4259b30SLisandro Dalcin NULL, 3128f4259b30SLisandro Dalcin NULL, 3129f4259b30SLisandro Dalcin NULL, 3130f4259b30SLisandro Dalcin /*119*/ NULL, 3131f4259b30SLisandro Dalcin NULL, 3132547795f9SHong Zhang MatMultHermitianTranspose_SeqBAIJ, 3133d6037b41SHong Zhang MatMultHermitianTransposeAdd_SeqBAIJ, 3134f4259b30SLisandro Dalcin NULL, 3135f4259b30SLisandro Dalcin /*124*/ NULL, 3136857cbf51SRichard Tran Mills MatGetColumnReductions_SeqBAIJ, 31373964eb88SJed Brown MatInvertBlockDiagonal_SeqBAIJ, 3138f4259b30SLisandro Dalcin NULL, 3139f4259b30SLisandro Dalcin NULL, 3140f4259b30SLisandro Dalcin /*129*/ NULL, 3141f4259b30SLisandro Dalcin NULL, 3142f4259b30SLisandro Dalcin NULL, 3143f4259b30SLisandro Dalcin NULL, 3144f4259b30SLisandro Dalcin NULL, 3145f4259b30SLisandro Dalcin /*134*/ NULL, 3146f4259b30SLisandro Dalcin NULL, 3147f4259b30SLisandro Dalcin NULL, 3148f4259b30SLisandro Dalcin NULL, 3149f4259b30SLisandro Dalcin NULL, 315046533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 3151f4259b30SLisandro Dalcin NULL, 3152f4259b30SLisandro Dalcin NULL, 3153bdf6f3fcSHong Zhang MatFDColoringSetUp_SeqXAIJ, 3154f4259b30SLisandro Dalcin NULL, 315586e85357SHong Zhang /*144*/ MatCreateMPIMatConcatenateSeqMat_SeqBAIJ, 3156d70f29a3SPierre Jolivet MatDestroySubMatrices_SeqBAIJ, 3157d70f29a3SPierre Jolivet NULL, 315899a7f59eSMark Adams NULL, 315999a7f59eSMark Adams NULL, 31607fb60732SBarry Smith NULL, 31617fb60732SBarry Smith /*150*/ NULL, 3162eede4a3fSMark Adams MatEliminateZeros_SeqBAIJ, 3163*4cc2b5b5SPierre Jolivet MatGetRowSumAbs_SeqBAIJ, 3164*4cc2b5b5SPierre Jolivet NULL}; 31652593348eSBarry Smith 3166ff6a9541SJacob Faibussowitsch static PetscErrorCode MatStoreValues_SeqBAIJ(Mat mat) 3167d71ae5a4SJacob Faibussowitsch { 31683e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 31698ece6314SShri Abhyankar PetscInt nz = aij->i[aij->mbs] * aij->bs2; 31703e90b805SBarry Smith 31713e90b805SBarry Smith PetscFunctionBegin; 31725f80ce2aSJacob Faibussowitsch PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 31733e90b805SBarry Smith 31743e90b805SBarry Smith /* allocate space for values if not already there */ 3175ff6a9541SJacob Faibussowitsch if (!aij->saved_values) PetscCall(PetscMalloc1(nz + 1, &aij->saved_values)); 31763e90b805SBarry Smith 31773e90b805SBarry Smith /* copy values over */ 31789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aij->saved_values, aij->a, nz)); 31793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31803e90b805SBarry Smith } 31813e90b805SBarry Smith 3182ff6a9541SJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_SeqBAIJ(Mat mat) 3183d71ae5a4SJacob Faibussowitsch { 31843e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 31858ece6314SShri Abhyankar PetscInt nz = aij->i[aij->mbs] * aij->bs2; 31863e90b805SBarry Smith 31873e90b805SBarry Smith PetscFunctionBegin; 31885f80ce2aSJacob Faibussowitsch PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 31895f80ce2aSJacob Faibussowitsch PetscCheck(aij->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first"); 31903e90b805SBarry Smith 31913e90b805SBarry Smith /* copy values over */ 31929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aij->a, aij->saved_values, nz)); 31933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31943e90b805SBarry Smith } 31953e90b805SBarry Smith 3196cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 3197cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType, MatReuse, Mat *); 3198273d9f13SBarry Smith 3199f9663b93SPierre Jolivet PetscErrorCode MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[]) 3200d71ae5a4SJacob Faibussowitsch { 3201ad79cf63SBarry Smith Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3202535b19f3SBarry Smith PetscInt i, mbs, nbs, bs2; 32038afaa268SBarry Smith PetscBool flg = PETSC_FALSE, skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE; 3204a23d5eceSKris Buschelman 3205a23d5eceSKris Buschelman PetscFunctionBegin; 3206ad79cf63SBarry Smith if (B->hash_active) { 3207ad79cf63SBarry Smith PetscInt bs; 3208aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 3209ad79cf63SBarry Smith PetscCall(PetscHMapIJVDestroy(&b->ht)); 3210ad79cf63SBarry Smith PetscCall(MatGetBlockSize(B, &bs)); 3211ad79cf63SBarry Smith if (bs > 1) PetscCall(PetscHSetIJDestroy(&b->bht)); 3212ad79cf63SBarry Smith PetscCall(PetscFree(b->dnz)); 3213ad79cf63SBarry Smith PetscCall(PetscFree(b->bdnz)); 3214ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 3215ad79cf63SBarry Smith } 32162576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 3217ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 3218ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 3219ab93d7beSBarry Smith nz = 0; 3220ab93d7beSBarry Smith } 32218c07d4e3SBarry Smith 32229566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 32239566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 32249566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 32259566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 3226899cda47SBarry Smith 3227899cda47SBarry Smith B->preallocated = PETSC_TRUE; 3228899cda47SBarry Smith 3229d0f46423SBarry Smith mbs = B->rmap->n / bs; 3230d0f46423SBarry Smith nbs = B->cmap->n / bs; 3231a23d5eceSKris Buschelman bs2 = bs * bs; 3232a23d5eceSKris Buschelman 32335f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n && nbs * bs == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number rows %" PetscInt_FMT ", cols %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, B->cmap->n, bs); 3234a23d5eceSKris Buschelman 3235a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 32365f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nz cannot be less than 0: value %" PetscInt_FMT, nz); 3237a23d5eceSKris Buschelman if (nnz) { 3238a23d5eceSKris Buschelman for (i = 0; i < mbs; i++) { 32395f80ce2aSJacob Faibussowitsch PetscCheck(nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, nnz[i]); 32405f80ce2aSJacob Faibussowitsch PetscCheck(nnz[i] <= nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be greater than block row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, nnz[i], nbs); 3241a23d5eceSKris Buschelman } 3242a23d5eceSKris Buschelman } 3243a23d5eceSKris Buschelman 3244d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Optimize options for SEQBAIJ matrix 2 ", "Mat"); 32459566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_no_unroll", "Do not optimize for block size (slow)", NULL, flg, &flg, NULL)); 3246d0609cedSBarry Smith PetscOptionsEnd(); 32478c07d4e3SBarry Smith 3248a23d5eceSKris Buschelman if (!flg) { 3249a23d5eceSKris Buschelman switch (bs) { 3250a23d5eceSKris Buschelman case 1: 3251a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_1; 3252a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_1; 3253a23d5eceSKris Buschelman break; 3254a23d5eceSKris Buschelman case 2: 3255a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_2; 3256a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_2; 3257a23d5eceSKris Buschelman break; 3258a23d5eceSKris Buschelman case 3: 3259a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_3; 3260a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_3; 3261a23d5eceSKris Buschelman break; 3262a23d5eceSKris Buschelman case 4: 3263a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_4; 3264a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_4; 3265a23d5eceSKris Buschelman break; 3266a23d5eceSKris Buschelman case 5: 3267a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_5; 3268a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_5; 3269a23d5eceSKris Buschelman break; 3270a23d5eceSKris Buschelman case 6: 3271a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_6; 3272a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_6; 3273a23d5eceSKris Buschelman break; 3274a23d5eceSKris Buschelman case 7: 3275a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_7; 3276a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_7; 3277a23d5eceSKris Buschelman break; 32789371c9d4SSatish Balay case 9: { 32796679dcc1SBarry Smith PetscInt version = 1; 32809566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)B)->prefix, "-mat_baij_mult_version", &version, NULL)); 32816679dcc1SBarry Smith switch (version) { 32825f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 32836679dcc1SBarry Smith case 1: 328496e086a2SDaniel Kokron B->ops->mult = MatMult_SeqBAIJ_9_AVX2; 328596e086a2SDaniel Kokron B->ops->multadd = MatMultAdd_SeqBAIJ_9_AVX2; 32869566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs)); 32876679dcc1SBarry Smith break; 32886679dcc1SBarry Smith #endif 32896679dcc1SBarry Smith default: 329096e086a2SDaniel Kokron B->ops->mult = MatMult_SeqBAIJ_N; 329196e086a2SDaniel Kokron B->ops->multadd = MatMultAdd_SeqBAIJ_N; 32929566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs)); 329396e086a2SDaniel Kokron break; 32946679dcc1SBarry Smith } 32956679dcc1SBarry Smith break; 32966679dcc1SBarry Smith } 3297ebada01fSBarry Smith case 11: 3298ebada01fSBarry Smith B->ops->mult = MatMult_SeqBAIJ_11; 3299ebada01fSBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_11; 3300ebada01fSBarry Smith break; 33019371c9d4SSatish Balay case 12: { 33026679dcc1SBarry Smith PetscInt version = 1; 33039566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)B)->prefix, "-mat_baij_mult_version", &version, NULL)); 33046679dcc1SBarry Smith switch (version) { 33056679dcc1SBarry Smith case 1: 33066679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_12_ver1; 33076679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1; 33089566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs)); 33098ab949d8SShri Abhyankar break; 33106679dcc1SBarry Smith case 2: 33116679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_12_ver2; 33126679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver2; 33139566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs)); 33146679dcc1SBarry Smith break; 33156679dcc1SBarry Smith #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 33166679dcc1SBarry Smith case 3: 33176679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_12_AVX2; 33186679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1; 33199566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs)); 33206679dcc1SBarry Smith break; 33216679dcc1SBarry Smith #endif 3322a23d5eceSKris Buschelman default: 3323a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_N; 3324a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_N; 33259566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs)); 33266679dcc1SBarry Smith break; 33276679dcc1SBarry Smith } 33286679dcc1SBarry Smith break; 33296679dcc1SBarry Smith } 33309371c9d4SSatish Balay case 15: { 33316679dcc1SBarry Smith PetscInt version = 1; 33329566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)B)->prefix, "-mat_baij_mult_version", &version, NULL)); 33336679dcc1SBarry Smith switch (version) { 33346679dcc1SBarry Smith case 1: 33356679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver1; 33369566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs)); 33376679dcc1SBarry Smith break; 33386679dcc1SBarry Smith case 2: 33396679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver2; 33409566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs)); 33416679dcc1SBarry Smith break; 33426679dcc1SBarry Smith case 3: 33436679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver3; 33449566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs)); 33456679dcc1SBarry Smith break; 33466679dcc1SBarry Smith case 4: 33476679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver4; 33489566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs)); 33496679dcc1SBarry Smith break; 33506679dcc1SBarry Smith default: 33516679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_N; 33529566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs)); 33536679dcc1SBarry Smith break; 33546679dcc1SBarry Smith } 33556679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_N; 33566679dcc1SBarry Smith break; 33576679dcc1SBarry Smith } 33586679dcc1SBarry Smith default: 33596679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_N; 33606679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_N; 33619566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs)); 3362a23d5eceSKris Buschelman break; 3363a23d5eceSKris Buschelman } 3364a23d5eceSKris Buschelman } 3365e48d15efSToby Isaac B->ops->sor = MatSOR_SeqBAIJ; 3366a23d5eceSKris Buschelman b->mbs = mbs; 3367a23d5eceSKris Buschelman b->nbs = nbs; 3368ab93d7beSBarry Smith if (!skipallocation) { 33692ee49352SLisandro Dalcin if (!b->imax) { 33709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mbs, &b->imax, mbs, &b->ilen)); 337126fbe8dcSKarl Rupp 33724fd072dbSBarry Smith b->free_imax_ilen = PETSC_TRUE; 33732ee49352SLisandro Dalcin } 3374ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 337526fbe8dcSKarl Rupp for (i = 0; i < mbs; i++) b->ilen[i] = 0; 3376a23d5eceSKris Buschelman if (!nnz) { 3377a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 3378c62bd62aSJed Brown else if (nz < 0) nz = 1; 33795d2a9ed1SStefano Zampini nz = PetscMin(nz, nbs); 3380a23d5eceSKris Buschelman for (i = 0; i < mbs; i++) b->imax[i] = nz; 33819566063dSJacob Faibussowitsch PetscCall(PetscIntMultError(nz, mbs, &nz)); 3382a23d5eceSKris Buschelman } else { 3383c73702f5SBarry Smith PetscInt64 nz64 = 0; 33849371c9d4SSatish Balay for (i = 0; i < mbs; i++) { 33859371c9d4SSatish Balay b->imax[i] = nnz[i]; 33869371c9d4SSatish Balay nz64 += nnz[i]; 33879371c9d4SSatish Balay } 33889566063dSJacob Faibussowitsch PetscCall(PetscIntCast(nz64, &nz)); 3389a23d5eceSKris Buschelman } 3390a23d5eceSKris Buschelman 3391a23d5eceSKris Buschelman /* allocate the matrix space */ 33929566063dSJacob Faibussowitsch PetscCall(MatSeqXAIJFreeAIJ(B, &b->a, &b->j, &b->i)); 3393672ba085SHong Zhang if (B->structure_only) { 33949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &b->j)); 33959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(B->rmap->N + 1, &b->i)); 3396672ba085SHong Zhang } else { 33976679dcc1SBarry Smith PetscInt nzbs2 = 0; 33989566063dSJacob Faibussowitsch PetscCall(PetscIntMultError(nz, bs2, &nzbs2)); 33999566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nzbs2, &b->a, nz, &b->j, B->rmap->N + 1, &b->i)); 34009566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->a, nz * bs2)); 3401672ba085SHong Zhang } 34029566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->j, nz)); 340326fbe8dcSKarl Rupp 3404672ba085SHong Zhang if (B->structure_only) { 3405672ba085SHong Zhang b->singlemalloc = PETSC_FALSE; 3406672ba085SHong Zhang b->free_a = PETSC_FALSE; 3407672ba085SHong Zhang } else { 3408a23d5eceSKris Buschelman b->singlemalloc = PETSC_TRUE; 3409672ba085SHong Zhang b->free_a = PETSC_TRUE; 3410672ba085SHong Zhang } 3411672ba085SHong Zhang b->free_ij = PETSC_TRUE; 3412672ba085SHong Zhang 3413a23d5eceSKris Buschelman b->i[0] = 0; 3414ad540459SPierre Jolivet for (i = 1; i < mbs + 1; i++) b->i[i] = b->i[i - 1] + b->imax[i - 1]; 3415672ba085SHong Zhang 3416e811da20SHong Zhang } else { 3417e6b907acSBarry Smith b->free_a = PETSC_FALSE; 3418e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 3419ab93d7beSBarry Smith } 3420a23d5eceSKris Buschelman 3421a23d5eceSKris Buschelman b->bs2 = bs2; 3422a23d5eceSKris Buschelman b->mbs = mbs; 3423a23d5eceSKris Buschelman b->nz = 0; 3424b32cb4a7SJed Brown b->maxnz = nz; 3425b32cb4a7SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz * bs2; 3426cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 3427cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 34289566063dSJacob Faibussowitsch if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 34293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3430a23d5eceSKris Buschelman } 3431a23d5eceSKris Buschelman 343266976f2fSJacob Faibussowitsch static PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 3433d71ae5a4SJacob Faibussowitsch { 3434725b52f3SLisandro Dalcin PetscInt i, m, nz, nz_max = 0, *nnz; 3435f4259b30SLisandro Dalcin PetscScalar *values = NULL; 3436d47bf9aaSJed Brown PetscBool roworiented = ((Mat_SeqBAIJ *)B->data)->roworiented; 3437725b52f3SLisandro Dalcin 3438725b52f3SLisandro Dalcin PetscFunctionBegin; 34395f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 34409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 34419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 34429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 34439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 34449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 3445d0f46423SBarry Smith m = B->rmap->n / bs; 3446725b52f3SLisandro Dalcin 34475f80ce2aSJacob Faibussowitsch PetscCheck(ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 34489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &nnz)); 3449725b52f3SLisandro Dalcin for (i = 0; i < m; i++) { 3450cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 34515f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 3452725b52f3SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 3453725b52f3SLisandro Dalcin nnz[i] = nz; 3454725b52f3SLisandro Dalcin } 34559566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(B, bs, 0, nnz)); 34569566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 3457725b52f3SLisandro Dalcin 3458725b52f3SLisandro Dalcin values = (PetscScalar *)V; 345948a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * (nz_max + 1), &values)); 3460725b52f3SLisandro Dalcin for (i = 0; i < m; i++) { 3461cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 3462cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 3463bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { 3464cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 34659566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ(B, 1, &i, ncols, icols, svals, INSERT_VALUES)); 34663adadaf3SJed Brown } else { 34673adadaf3SJed Brown PetscInt j; 34683adadaf3SJed Brown for (j = 0; j < ncols; j++) { 34693adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 34709566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ(B, 1, &i, 1, &icols[j], svals, INSERT_VALUES)); 34713adadaf3SJed Brown } 34723adadaf3SJed Brown } 3473725b52f3SLisandro Dalcin } 34749566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 34759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 34769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 34779566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 34783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3479725b52f3SLisandro Dalcin } 3480725b52f3SLisandro Dalcin 3481cda14afcSprj- /*@C 348211a5261eSBarry Smith MatSeqBAIJGetArray - gives read/write access to the array where the data for a `MATSEQBAIJ` matrix is stored 3483cda14afcSprj- 3484cda14afcSprj- Not Collective 3485cda14afcSprj- 3486cda14afcSprj- Input Parameter: 3487fe59aa6dSJacob Faibussowitsch . A - a `MATSEQBAIJ` matrix 3488cda14afcSprj- 3489cda14afcSprj- Output Parameter: 3490cda14afcSprj- . array - pointer to the data 3491cda14afcSprj- 3492cda14afcSprj- Level: intermediate 3493cda14afcSprj- 34941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQBAIJ`, `MatSeqBAIJRestoreArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()` 3495cda14afcSprj- @*/ 34965d83a8b1SBarry Smith PetscErrorCode MatSeqBAIJGetArray(Mat A, PetscScalar *array[]) 3497d71ae5a4SJacob Faibussowitsch { 3498cda14afcSprj- PetscFunctionBegin; 3499cac4c232SBarry Smith PetscUseMethod(A, "MatSeqBAIJGetArray_C", (Mat, PetscScalar **), (A, array)); 35003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3501cda14afcSprj- } 3502cda14afcSprj- 3503cda14afcSprj- /*@C 350411a5261eSBarry Smith MatSeqBAIJRestoreArray - returns access to the array where the data for a `MATSEQBAIJ` matrix is stored obtained by `MatSeqBAIJGetArray()` 3505cda14afcSprj- 3506cda14afcSprj- Not Collective 3507cda14afcSprj- 3508cda14afcSprj- Input Parameters: 3509fe59aa6dSJacob Faibussowitsch + A - a `MATSEQBAIJ` matrix 3510cda14afcSprj- - array - pointer to the data 3511cda14afcSprj- 3512cda14afcSprj- Level: intermediate 3513cda14afcSprj- 35141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSeqBAIJGetArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()` 3515cda14afcSprj- @*/ 35165d83a8b1SBarry Smith PetscErrorCode MatSeqBAIJRestoreArray(Mat A, PetscScalar *array[]) 3517d71ae5a4SJacob Faibussowitsch { 3518cda14afcSprj- PetscFunctionBegin; 3519cac4c232SBarry Smith PetscUseMethod(A, "MatSeqBAIJRestoreArray_C", (Mat, PetscScalar **), (A, array)); 35203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3521cda14afcSprj- } 3522cda14afcSprj- 35230bad9183SKris Buschelman /*MC 3524fafad747SKris Buschelman MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 35250bad9183SKris Buschelman block sparse compressed row format. 35260bad9183SKris Buschelman 35270bad9183SKris Buschelman Options Database Keys: 352820f4b53cSBarry Smith + -mat_type seqbaij - sets the matrix type to `MATSEQBAIJ` during a call to `MatSetFromOptions()` 35296679dcc1SBarry Smith - -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 35300bad9183SKris Buschelman 35310bad9183SKris Buschelman Level: beginner 35320cd7f59aSBarry Smith 35330cd7f59aSBarry Smith Notes: 353411a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 353511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 35360bad9183SKris Buschelman 35372ef1f0ffSBarry Smith Run with `-info` to see what version of the matrix-vector product is being used 35386679dcc1SBarry Smith 35391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()` 35400bad9183SKris Buschelman M*/ 35410bad9183SKris Buschelman 3542cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType, MatReuse, Mat *); 3543b24902e0SBarry Smith 3544d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJ(Mat B) 3545d71ae5a4SJacob Faibussowitsch { 3546c1ac3661SBarry Smith PetscMPIInt size; 3547b6490206SBarry Smith Mat_SeqBAIJ *b; 35483b2fbd54SBarry Smith 35493a40ed3dSBarry Smith PetscFunctionBegin; 35509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 35515f80ce2aSJacob Faibussowitsch PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Comm must be of size 1"); 3552b6490206SBarry Smith 35534dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 3554b0a32e0cSBarry Smith B->data = (void *)b; 3555aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 355626fbe8dcSKarl Rupp 3557f4259b30SLisandro Dalcin b->row = NULL; 3558f4259b30SLisandro Dalcin b->col = NULL; 3559f4259b30SLisandro Dalcin b->icol = NULL; 35602593348eSBarry Smith b->reallocs = 0; 3561f4259b30SLisandro Dalcin b->saved_values = NULL; 35622593348eSBarry Smith 3563c4992f7dSBarry Smith b->roworiented = PETSC_TRUE; 35642593348eSBarry Smith b->nonew = 0; 3565f4259b30SLisandro Dalcin b->diag = NULL; 3566f4259b30SLisandro Dalcin B->spptr = NULL; 3567b32cb4a7SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz * b->bs2; 3568a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 35694e220ebcSLois Curfman McInnes 35709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJGetArray_C", MatSeqBAIJGetArray_SeqBAIJ)); 35719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJRestoreArray_C", MatSeqBAIJRestoreArray_SeqBAIJ)); 35729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqBAIJ)); 35739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqBAIJ)); 35749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJSetColumnIndices_C", MatSeqBAIJSetColumnIndices_SeqBAIJ)); 35759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_seqaij_C", MatConvert_SeqBAIJ_SeqAIJ)); 35769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_seqsbaij_C", MatConvert_SeqBAIJ_SeqSBAIJ)); 35779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJSetPreallocation_C", MatSeqBAIJSetPreallocation_SeqBAIJ)); 35789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJSetPreallocationCSR_C", MatSeqBAIJSetPreallocationCSR_SeqBAIJ)); 35799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_SeqBAIJ)); 35807ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 35819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_hypre_C", MatConvert_AIJ_HYPRE)); 35827ea3e4caSstefano_zampini #endif 35839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_is_C", MatConvert_XAIJ_IS)); 35849566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQBAIJ)); 35853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35862593348eSBarry Smith } 35872593348eSBarry Smith 3588d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace) 3589d71ae5a4SJacob Faibussowitsch { 3590b24902e0SBarry Smith Mat_SeqBAIJ *c = (Mat_SeqBAIJ *)C->data, *a = (Mat_SeqBAIJ *)A->data; 3591a96a251dSBarry Smith PetscInt i, mbs = a->mbs, nz = a->nz, bs2 = a->bs2; 3592de6a44a3SBarry Smith 35933a40ed3dSBarry Smith PetscFunctionBegin; 359431fe6a7dSBarry Smith PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Cannot duplicate unassembled matrix"); 35955f80ce2aSJacob Faibussowitsch PetscCheck(a->i[mbs] == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupt matrix"); 35962593348eSBarry Smith 35974fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 35984fd072dbSBarry Smith c->imax = a->imax; 35994fd072dbSBarry Smith c->ilen = a->ilen; 36004fd072dbSBarry Smith c->free_imax_ilen = PETSC_FALSE; 36014fd072dbSBarry Smith } else { 36029566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mbs, &c->imax, mbs, &c->ilen)); 3603b6490206SBarry Smith for (i = 0; i < mbs; i++) { 36042593348eSBarry Smith c->imax[i] = a->imax[i]; 36052593348eSBarry Smith c->ilen[i] = a->ilen[i]; 36062593348eSBarry Smith } 36074fd072dbSBarry Smith c->free_imax_ilen = PETSC_TRUE; 36084fd072dbSBarry Smith } 36092593348eSBarry Smith 36102593348eSBarry Smith /* allocate the matrix space */ 361116a2bf60SHong Zhang if (mallocmatspace) { 36124fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 36139566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs2 * nz, &c->a)); 361426fbe8dcSKarl Rupp 36154fd072dbSBarry Smith c->i = a->i; 36164fd072dbSBarry Smith c->j = a->j; 3617379be0ddSLisandro Dalcin c->singlemalloc = PETSC_FALSE; 3618379be0ddSLisandro Dalcin c->free_a = PETSC_TRUE; 3619379be0ddSLisandro Dalcin c->free_ij = PETSC_FALSE; 36204fd072dbSBarry Smith c->parent = A; 36211e40a84eSLisandro Dalcin C->preallocated = PETSC_TRUE; 36221e40a84eSLisandro Dalcin C->assembled = PETSC_TRUE; 362326fbe8dcSKarl Rupp 36249566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)A)); 36259566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 36269566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 36274fd072dbSBarry Smith } else { 36289566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(bs2 * nz, &c->a, nz, &c->j, mbs + 1, &c->i)); 362926fbe8dcSKarl Rupp 3630c4992f7dSBarry Smith c->singlemalloc = PETSC_TRUE; 3631379be0ddSLisandro Dalcin c->free_a = PETSC_TRUE; 36324fd072dbSBarry Smith c->free_ij = PETSC_TRUE; 363326fbe8dcSKarl Rupp 36349566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->i, a->i, mbs + 1)); 3635b6490206SBarry Smith if (mbs > 0) { 36369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->j, a->j, nz)); 36372e8a6d31SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 36389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->a, a->a, bs2 * nz)); 36392e8a6d31SBarry Smith } else { 36409566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->a, bs2 * nz)); 36412593348eSBarry Smith } 36422593348eSBarry Smith } 36431e40a84eSLisandro Dalcin C->preallocated = PETSC_TRUE; 36441e40a84eSLisandro Dalcin C->assembled = PETSC_TRUE; 364516a2bf60SHong Zhang } 36464fd072dbSBarry Smith } 364716a2bf60SHong Zhang 36482593348eSBarry Smith c->roworiented = a->roworiented; 36492593348eSBarry Smith c->nonew = a->nonew; 365026fbe8dcSKarl Rupp 36519566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &C->rmap)); 36529566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &C->cmap)); 365326fbe8dcSKarl Rupp 36545c9eb25fSBarry Smith c->bs2 = a->bs2; 36555c9eb25fSBarry Smith c->mbs = a->mbs; 36565c9eb25fSBarry Smith c->nbs = a->nbs; 36572593348eSBarry Smith 36582593348eSBarry Smith if (a->diag) { 36594fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 36604fd072dbSBarry Smith c->diag = a->diag; 36614fd072dbSBarry Smith c->free_diag = PETSC_FALSE; 36624fd072dbSBarry Smith } else { 36639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mbs + 1, &c->diag)); 366426fbe8dcSKarl Rupp for (i = 0; i < mbs; i++) c->diag[i] = a->diag[i]; 36654fd072dbSBarry Smith c->free_diag = PETSC_TRUE; 36664fd072dbSBarry Smith } 3667f4259b30SLisandro Dalcin } else c->diag = NULL; 366826fbe8dcSKarl Rupp 36692593348eSBarry Smith c->nz = a->nz; 3670f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 3671f361c04dSBarry Smith c->solve_work = NULL; 3672f361c04dSBarry Smith c->mult_work = NULL; 3673f361c04dSBarry Smith c->sor_workt = NULL; 3674f361c04dSBarry Smith c->sor_work = NULL; 367588e51ccdSHong Zhang 367688e51ccdSHong Zhang c->compressedrow.use = a->compressedrow.use; 367788e51ccdSHong Zhang c->compressedrow.nrows = a->compressedrow.nrows; 3678cd6b891eSBarry Smith if (a->compressedrow.use) { 367988e51ccdSHong Zhang i = a->compressedrow.nrows; 36809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(i + 1, &c->compressedrow.i, i + 1, &c->compressedrow.rindex)); 36819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->compressedrow.i, a->compressedrow.i, i + 1)); 36829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->compressedrow.rindex, a->compressedrow.rindex, i)); 368388e51ccdSHong Zhang } else { 368488e51ccdSHong Zhang c->compressedrow.use = PETSC_FALSE; 36850298fd71SBarry Smith c->compressedrow.i = NULL; 36860298fd71SBarry Smith c->compressedrow.rindex = NULL; 368788e51ccdSHong Zhang } 3688c05f355bSMark Adams c->nonzerorowcnt = a->nonzerorowcnt; 3689e56f5c9eSBarry Smith C->nonzerostate = A->nonzerostate; 369026fbe8dcSKarl Rupp 36919566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist)); 36923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36932593348eSBarry Smith } 36942593348eSBarry Smith 3695d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqBAIJ(Mat A, MatDuplicateOption cpvalues, Mat *B) 3696d71ae5a4SJacob Faibussowitsch { 3697b24902e0SBarry Smith PetscFunctionBegin; 36989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B)); 36999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, A->rmap->N, A->cmap->n, A->rmap->N, A->cmap->n)); 37009566063dSJacob Faibussowitsch PetscCall(MatSetType(*B, MATSEQBAIJ)); 37019566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqBAIJ(*B, A, cpvalues, PETSC_TRUE)); 37023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3703b24902e0SBarry Smith } 3704b24902e0SBarry Smith 3705618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */ 3706d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_SeqBAIJ_Binary(Mat mat, PetscViewer viewer) 3707d71ae5a4SJacob Faibussowitsch { 3708b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3709b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs; 3710b51a4376SLisandro Dalcin PetscScalar *matvals; 3711b51a4376SLisandro Dalcin 3712b51a4376SLisandro Dalcin PetscFunctionBegin; 37139566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3714b51a4376SLisandro Dalcin 3715b51a4376SLisandro Dalcin /* read matrix header */ 37169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 37175f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 37189371c9d4SSatish Balay M = header[1]; 37199371c9d4SSatish Balay N = header[2]; 37209371c9d4SSatish Balay nz = header[3]; 37215f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 37225f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 37235f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as SeqBAIJ"); 3724b51a4376SLisandro Dalcin 3725b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 37269566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3727b51a4376SLisandro Dalcin /* set local and global sizes if not set already */ 3728b51a4376SLisandro Dalcin if (mat->rmap->n < 0) mat->rmap->n = M; 3729b51a4376SLisandro Dalcin if (mat->cmap->n < 0) mat->cmap->n = N; 3730b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3731b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 37329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 37339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3734b51a4376SLisandro Dalcin 3735b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 37369566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 37375f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 37389566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 37399566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 37409371c9d4SSatish Balay mbs = m / bs; 37419371c9d4SSatish Balay nbs = n / bs; 3742b51a4376SLisandro Dalcin 3743b51a4376SLisandro Dalcin /* read in row lengths, column indices and nonzero values */ 37449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 37459566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, rowidxs + 1, m, NULL, PETSC_INT)); 37469371c9d4SSatish Balay rowidxs[0] = 0; 37479371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3748b51a4376SLisandro Dalcin sum = rowidxs[m]; 37495f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3750b51a4376SLisandro Dalcin 3751b51a4376SLisandro Dalcin /* read in column indices and nonzero values */ 37529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, nz, &matvals)); 37539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, colidxs, rowidxs[m], NULL, PETSC_INT)); 37549566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, matvals, rowidxs[m], NULL, PETSC_SCALAR)); 3755b51a4376SLisandro Dalcin 3756b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3757b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count nonzeros */ 3758b51a4376SLisandro Dalcin PetscInt *nnz; 3759618cc2edSLisandro Dalcin PetscBool sbaij; 3760b51a4376SLisandro Dalcin 37619566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 37629566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mbs, &nnz)); 37639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATSEQSBAIJ, &sbaij)); 3764b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 37659566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 3766618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3767618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3768618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3769618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3770618cc2edSLisandro Dalcin if (!sbaij || col >= row) 3771618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, col / bs)) nnz[i]++; 3772618cc2edSLisandro Dalcin } 3773618cc2edSLisandro Dalcin } 3774b51a4376SLisandro Dalcin } 37759566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 37769566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(mat, bs, 0, nnz)); 37779566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(mat, bs, 0, nnz)); 37789566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 3779b51a4376SLisandro Dalcin } 3780b51a4376SLisandro Dalcin 3781b51a4376SLisandro Dalcin /* store matrix values */ 3782b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3783b51a4376SLisandro Dalcin PetscInt row = i, s = rowidxs[i], e = rowidxs[i + 1]; 37849927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3785b51a4376SLisandro Dalcin } 3786b51a4376SLisandro Dalcin 37879566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 37889566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 37899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 37909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 37913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3792b51a4376SLisandro Dalcin } 3793b51a4376SLisandro Dalcin 3794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_SeqBAIJ(Mat mat, PetscViewer viewer) 3795d71ae5a4SJacob Faibussowitsch { 37967f489da9SVaclav Hapla PetscBool isbinary; 3797f501eaabSShri Abhyankar 3798f501eaabSShri Abhyankar PetscFunctionBegin; 37999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 38005f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 38019566063dSJacob Faibussowitsch PetscCall(MatLoad_SeqBAIJ_Binary(mat, viewer)); 38023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3803f501eaabSShri Abhyankar } 3804f501eaabSShri Abhyankar 38055d83a8b1SBarry Smith /*@ 380611a5261eSBarry Smith MatCreateSeqBAIJ - Creates a sparse matrix in `MATSEQAIJ` (block 3807273d9f13SBarry Smith compressed row) format. For good matrix assembly performance the 380820f4b53cSBarry Smith user should preallocate the matrix storage by setting the parameter `nz` 380920f4b53cSBarry Smith (or the array `nnz`). 38102593348eSBarry Smith 3811d083f849SBarry Smith Collective 3812273d9f13SBarry Smith 3813273d9f13SBarry Smith Input Parameters: 381411a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 381511a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 381611a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 3817273d9f13SBarry Smith . m - number of rows 3818273d9f13SBarry Smith . n - number of columns 381935d8aa7fSBarry Smith . nz - number of nonzero blocks per block row (same for all rows) 382035d8aa7fSBarry Smith - nnz - array containing the number of nonzero blocks in the various block rows 382120f4b53cSBarry Smith (possibly different for each block row) or `NULL` 3822273d9f13SBarry Smith 3823273d9f13SBarry Smith Output Parameter: 3824273d9f13SBarry Smith . A - the matrix 3825273d9f13SBarry Smith 3826273d9f13SBarry Smith Options Database Keys: 382711a5261eSBarry Smith + -mat_no_unroll - uses code that does not unroll the loops in the block calculations (much slower) 3828a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 3829273d9f13SBarry Smith 3830273d9f13SBarry Smith Level: intermediate 3831273d9f13SBarry Smith 3832273d9f13SBarry Smith Notes: 383377433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 38342ef1f0ffSBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 38352ef1f0ffSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 38362ef1f0ffSBarry Smith 3837d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 3838d1be2dadSMatthew Knepley 38392ef1f0ffSBarry Smith If the `nnz` parameter is given then the `nz` parameter is ignored 384049a6f317SBarry Smith 384135d8aa7fSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 384235d8aa7fSBarry Smith 38432ef1f0ffSBarry Smith The `MATSEQBAIJ` format is fully compatible with standard Fortran 3844273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 384520f4b53cSBarry Smith either one (as in Fortran) or zero. 3846273d9f13SBarry Smith 38472ef1f0ffSBarry Smith Specify the preallocated storage with either `nz` or `nnz` (not both). 38482ef1f0ffSBarry Smith Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory 3849651615e1SBarry Smith allocation. See [Sparse Matrices](sec_matsparse) for details. 3850273d9f13SBarry Smith matrices. 3851273d9f13SBarry Smith 38521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 3853273d9f13SBarry Smith @*/ 3854d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSeqBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt nz, const PetscInt nnz[], Mat *A) 3855d71ae5a4SJacob Faibussowitsch { 3856273d9f13SBarry Smith PetscFunctionBegin; 38579566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 38589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n)); 38599566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 38609566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, nz, (PetscInt *)nnz)); 38613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3862273d9f13SBarry Smith } 3863273d9f13SBarry Smith 38645d83a8b1SBarry Smith /*@ 3865273d9f13SBarry Smith MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3866273d9f13SBarry Smith per row in the matrix. For good matrix assembly performance the 386720f4b53cSBarry Smith user should preallocate the matrix storage by setting the parameter `nz` 386820f4b53cSBarry Smith (or the array `nnz`). 3869273d9f13SBarry Smith 3870d083f849SBarry Smith Collective 3871273d9f13SBarry Smith 3872273d9f13SBarry Smith Input Parameters: 38731c4f3114SJed Brown + B - the matrix 387411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 387511a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 3876273d9f13SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 3877273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows 38782ef1f0ffSBarry Smith (possibly different for each block row) or `NULL` 3879273d9f13SBarry Smith 3880273d9f13SBarry Smith Options Database Keys: 388111a5261eSBarry Smith + -mat_no_unroll - uses code that does not unroll the loops in the block calculations (much slower) 3882a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 3883273d9f13SBarry Smith 3884273d9f13SBarry Smith Level: intermediate 3885273d9f13SBarry Smith 3886273d9f13SBarry Smith Notes: 38872ef1f0ffSBarry Smith If the `nnz` parameter is given then the `nz` parameter is ignored 388849a6f317SBarry Smith 388911a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3890aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 389120f4b53cSBarry Smith You can also run with the option `-info` and look for messages with the string 3892aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3893aa95bbe8SBarry Smith 38942ef1f0ffSBarry Smith The `MATSEQBAIJ` format is fully compatible with standard Fortran 3895273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 389620f4b53cSBarry Smith either one (as in Fortran) or zero. 3897273d9f13SBarry Smith 3898d8a51d2aSBarry Smith Specify the preallocated storage with either `nz` or `nnz` (not both). 38992ef1f0ffSBarry Smith Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory 3900651615e1SBarry Smith allocation. See [Sparse Matrices](sec_matsparse) for details. 3901273d9f13SBarry Smith 39021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatGetInfo()` 3903273d9f13SBarry Smith @*/ 3904d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[]) 3905d71ae5a4SJacob Faibussowitsch { 3906273d9f13SBarry Smith PetscFunctionBegin; 39076ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 39086ba663aaSJed Brown PetscValidType(B, 1); 39096ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3910cac4c232SBarry Smith PetscTryMethod(B, "MatSeqBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[]), (B, bs, nz, nnz)); 39113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3912273d9f13SBarry Smith } 3913a1d92eedSBarry Smith 3914725b52f3SLisandro Dalcin /*@C 391511a5261eSBarry Smith MatSeqBAIJSetPreallocationCSR - Creates a sparse sequential matrix in `MATSEQBAIJ` format using the given nonzero structure and (optional) numerical values 3916725b52f3SLisandro Dalcin 3917d083f849SBarry Smith Collective 3918725b52f3SLisandro Dalcin 3919725b52f3SLisandro Dalcin Input Parameters: 39201c4f3114SJed Brown + B - the matrix 392120f4b53cSBarry Smith . bs - the blocksize 3922d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3923d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 3924d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 3925725b52f3SLisandro Dalcin 3926664954b6SBarry Smith Level: advanced 3927725b52f3SLisandro Dalcin 39283adadaf3SJed Brown Notes: 3929d8a51d2aSBarry Smith The `i`,`j`,`v` values are COPIED with this routine; to avoid the copy use `MatCreateSeqBAIJWithArrays()` 3930d8a51d2aSBarry Smith 393111a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 393211a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` of `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 39333adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 393411a5261eSBarry Smith `MAT_ROW_ORIENTED` of `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 39353adadaf3SJed Brown block column and the second index is over columns within a block. 39363adadaf3SJed Brown 3937664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 3938664954b6SBarry Smith 39391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatSeqBAIJSetPreallocation()`, `MATSEQBAIJ` 3940725b52f3SLisandro Dalcin @*/ 3941d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 3942d71ae5a4SJacob Faibussowitsch { 3943725b52f3SLisandro Dalcin PetscFunctionBegin; 39446ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 39456ba663aaSJed Brown PetscValidType(B, 1); 39466ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3947cac4c232SBarry Smith PetscTryMethod(B, "MatSeqBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 39483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3949725b52f3SLisandro Dalcin } 3950725b52f3SLisandro Dalcin 3951c75a6043SHong Zhang /*@ 395211a5261eSBarry Smith MatCreateSeqBAIJWithArrays - Creates a `MATSEQBAIJ` matrix using matrix elements provided by the user. 3953c75a6043SHong Zhang 3954d083f849SBarry Smith Collective 3955c75a6043SHong Zhang 3956c75a6043SHong Zhang Input Parameters: 3957c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 3958c75a6043SHong Zhang . bs - size of block 3959c75a6043SHong Zhang . m - number of rows 3960c75a6043SHong Zhang . n - number of columns 3961483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row block row of the matrix 3962c75a6043SHong Zhang . j - column indices 3963c75a6043SHong Zhang - a - matrix values 3964c75a6043SHong Zhang 3965c75a6043SHong Zhang Output Parameter: 3966c75a6043SHong Zhang . mat - the matrix 3967c75a6043SHong Zhang 3968dfb205c3SBarry Smith Level: advanced 3969c75a6043SHong Zhang 3970c75a6043SHong Zhang Notes: 39712ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays are not copied by this routine, the user must free these arrays 3972c75a6043SHong Zhang once the matrix is destroyed 3973c75a6043SHong Zhang 3974c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 3975c75a6043SHong Zhang 39762ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 3977c75a6043SHong Zhang 397811a5261eSBarry Smith When block size is greater than 1 the matrix values must be stored using the `MATSEQBAIJ` storage format 3979dfb205c3SBarry Smith 39803adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 39813adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 39823adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 39833adadaf3SJed Brown with column-major ordering within blocks. 3984dfb205c3SBarry Smith 39851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateBAIJ()`, `MatCreateSeqBAIJ()` 3986c75a6043SHong Zhang @*/ 3987d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt i[], PetscInt j[], PetscScalar a[], Mat *mat) 3988d71ae5a4SJacob Faibussowitsch { 3989c75a6043SHong Zhang Mat_SeqBAIJ *baij; 3990c75a6043SHong Zhang 3991c75a6043SHong Zhang PetscFunctionBegin; 39925f80ce2aSJacob Faibussowitsch PetscCheck(bs == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "block size %" PetscInt_FMT " > 1 is not supported yet", bs); 39935f80ce2aSJacob Faibussowitsch if (m > 0) PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 3994c75a6043SHong Zhang 39959566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 39969566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, m, n)); 39979566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATSEQBAIJ)); 39989566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*mat, bs, MAT_SKIP_ALLOCATION, NULL)); 3999c75a6043SHong Zhang baij = (Mat_SeqBAIJ *)(*mat)->data; 40009566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &baij->imax, m, &baij->ilen)); 4001c75a6043SHong Zhang 4002c75a6043SHong Zhang baij->i = i; 4003c75a6043SHong Zhang baij->j = j; 4004c75a6043SHong Zhang baij->a = a; 400526fbe8dcSKarl Rupp 4006c75a6043SHong Zhang baij->singlemalloc = PETSC_FALSE; 4007c75a6043SHong Zhang baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 4008e6b907acSBarry Smith baij->free_a = PETSC_FALSE; 4009e6b907acSBarry Smith baij->free_ij = PETSC_FALSE; 4010ceb5bf51SJacob Faibussowitsch baij->free_imax_ilen = PETSC_TRUE; 4011c75a6043SHong Zhang 4012ceb5bf51SJacob Faibussowitsch for (PetscInt ii = 0; ii < m; ii++) { 4013ceb5bf51SJacob Faibussowitsch const PetscInt row_len = i[ii + 1] - i[ii]; 4014ceb5bf51SJacob Faibussowitsch 4015ceb5bf51SJacob Faibussowitsch baij->ilen[ii] = baij->imax[ii] = row_len; 4016ceb5bf51SJacob Faibussowitsch PetscCheck(row_len >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row length in i (row indices) row = %" PetscInt_FMT " length = %" PetscInt_FMT, ii, row_len); 4017c75a6043SHong Zhang } 401876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 4019ceb5bf51SJacob Faibussowitsch for (PetscInt ii = 0; ii < baij->i[m]; ii++) { 40206bdcaf15SBarry Smith PetscCheck(j[ii] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative column index at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]); 40216bdcaf15SBarry Smith PetscCheck(j[ii] <= n - 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index to large at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]); 4022c75a6043SHong Zhang } 402376bd3646SJed Brown } 4024c75a6043SHong Zhang 40259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 40269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 40273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4028c75a6043SHong Zhang } 4029bdf6f3fcSHong Zhang 4030d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4031d71ae5a4SJacob Faibussowitsch { 4032bdf6f3fcSHong Zhang PetscFunctionBegin; 40339566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(comm, inmat, n, scall, outmat)); 40343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4035bdf6f3fcSHong Zhang } 4036