1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 32593348eSBarry Smith /* 4b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 52593348eSBarry Smith matrix storage format. 62593348eSBarry Smith */ 77c4f633dSBarry Smith #include "../src/mat/impls/baij/seq/baij.h" 87c4f633dSBarry Smith #include "../src/inline/spops.h" 9325e03aeSBarry Smith #include "petscsys.h" /*I "petscmat.h" I*/ 103b547af2SSatish Balay 117c4f633dSBarry Smith #include "../src/inline/ilu.h" 12b01c7715SBarry Smith 13b01c7715SBarry Smith #undef __FUNCT__ 1443516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal" 15bc08b0f1SBarry Smith /*@ 1643516a2dSKris Buschelman MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries. 1743516a2dSKris Buschelman 1843516a2dSKris Buschelman Collective on Mat 1943516a2dSKris Buschelman 2043516a2dSKris Buschelman Input Parameters: 2143516a2dSKris Buschelman . mat - the matrix 2243516a2dSKris Buschelman 2343516a2dSKris Buschelman Level: advanced 2443516a2dSKris Buschelman @*/ 2546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat) 2643516a2dSKris Buschelman { 2743516a2dSKris Buschelman PetscErrorCode ierr,(*f)(Mat); 2843516a2dSKris Buschelman 2943516a2dSKris Buschelman PetscFunctionBegin; 3043516a2dSKris Buschelman PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 3143516a2dSKris Buschelman if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 3243516a2dSKris Buschelman if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 3343516a2dSKris Buschelman 3443516a2dSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr); 3543516a2dSKris Buschelman if (f) { 3643516a2dSKris Buschelman ierr = (*f)(mat);CHKERRQ(ierr); 3743516a2dSKris Buschelman } else { 3843516a2dSKris Buschelman SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ."); 3943516a2dSKris Buschelman } 4043516a2dSKris Buschelman PetscFunctionReturn(0); 4143516a2dSKris Buschelman } 4243516a2dSKris Buschelman 4343516a2dSKris Buschelman EXTERN_C_BEGIN 4443516a2dSKris Buschelman #undef __FUNCT__ 45b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ" 4646129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A) 47b01c7715SBarry Smith { 48b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*) A->data; 496849ba73SBarry Smith PetscErrorCode ierr; 50d0f46423SBarry Smith PetscInt *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs; 5197e5c40aSBarry Smith MatScalar *v = a->a,*odiag,*diag,*mdiag; 5262bba022SBarry Smith PetscReal shift = 0.0; 53b01c7715SBarry Smith 54b01c7715SBarry Smith PetscFunctionBegin; 55b01c7715SBarry Smith if (a->idiagvalid) PetscFunctionReturn(0); 56b01c7715SBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 57b01c7715SBarry Smith diag_offset = a->diag; 58b01c7715SBarry Smith if (!a->idiag) { 59b01c7715SBarry Smith ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr); 60b01c7715SBarry Smith } 61b01c7715SBarry Smith diag = a->idiag; 62b01c7715SBarry Smith mdiag = a->idiag+bs*bs*mbs; 63b01c7715SBarry Smith /* factor and invert each block */ 64521d7252SBarry Smith switch (bs){ 65b01c7715SBarry Smith case 2: 66b01c7715SBarry Smith for (i=0; i<mbs; i++) { 67b01c7715SBarry Smith odiag = v + 4*diag_offset[i]; 68b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 69b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 7062bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr); 71b01c7715SBarry Smith diag += 4; 72b01c7715SBarry Smith mdiag += 4; 73b01c7715SBarry Smith } 74b01c7715SBarry Smith break; 75b01c7715SBarry Smith case 3: 76b01c7715SBarry Smith for (i=0; i<mbs; i++) { 77b01c7715SBarry Smith odiag = v + 9*diag_offset[i]; 78b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 79b01c7715SBarry Smith diag[4] = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7]; 80b01c7715SBarry Smith diag[8] = odiag[8]; 81b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 82b01c7715SBarry Smith mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7]; 83b01c7715SBarry Smith mdiag[8] = odiag[8]; 8462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr); 85b01c7715SBarry Smith diag += 9; 86b01c7715SBarry Smith mdiag += 9; 87b01c7715SBarry Smith } 88b01c7715SBarry Smith break; 89b01c7715SBarry Smith case 4: 90b01c7715SBarry Smith for (i=0; i<mbs; i++) { 91b01c7715SBarry Smith odiag = v + 16*diag_offset[i]; 92b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 93b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 9462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr); 95b01c7715SBarry Smith diag += 16; 96b01c7715SBarry Smith mdiag += 16; 97b01c7715SBarry Smith } 98b01c7715SBarry Smith break; 99b01c7715SBarry Smith case 5: 100b01c7715SBarry Smith for (i=0; i<mbs; i++) { 101b01c7715SBarry Smith odiag = v + 25*diag_offset[i]; 102b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 103b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 10462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr); 105b01c7715SBarry Smith diag += 25; 106b01c7715SBarry Smith mdiag += 25; 107b01c7715SBarry Smith } 108b01c7715SBarry Smith break; 109b01c7715SBarry Smith default: 110521d7252SBarry Smith SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs); 111b01c7715SBarry Smith } 112b01c7715SBarry Smith a->idiagvalid = PETSC_TRUE; 113b01c7715SBarry Smith PetscFunctionReturn(0); 114b01c7715SBarry Smith } 11543516a2dSKris Buschelman EXTERN_C_END 116b01c7715SBarry Smith 117b01c7715SBarry Smith #undef __FUNCT__ 1186d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1" 1196d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1206d3beeddSMatthew Knepley { 1216d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1226d3beeddSMatthew Knepley PetscScalar *x,x1,s1; 123dd6ea824SBarry Smith const PetscScalar *b; 124dd6ea824SBarry Smith const MatScalar *aa = a->a, *idiag,*mdiag,*v; 1256d3beeddSMatthew Knepley PetscErrorCode ierr; 1266d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 1276d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 1286d3beeddSMatthew Knepley 1296d3beeddSMatthew Knepley PetscFunctionBegin; 1306d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 1316d3beeddSMatthew Knepley its = its*lits; 1326d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 1336d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 1346d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 1356d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 1366d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 1376d3beeddSMatthew Knepley 1386d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 1396d3beeddSMatthew Knepley 1406d3beeddSMatthew Knepley diag = a->diag; 1416d3beeddSMatthew Knepley idiag = a->idiag; 1426d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1436d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 1446d3beeddSMatthew Knepley 1456d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 1466d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 1476d3beeddSMatthew Knepley x[0] = b[0]*idiag[0]; 1486d3beeddSMatthew Knepley i2 = 1; 1496d3beeddSMatthew Knepley idiag += 1; 1506d3beeddSMatthew Knepley for (i=1; i<m; i++) { 1516d3beeddSMatthew Knepley v = aa + ai[i]; 1526d3beeddSMatthew Knepley vi = aj + ai[i]; 1536d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 1546d3beeddSMatthew Knepley s1 = b[i2]; 1556d3beeddSMatthew Knepley while (nz--) { 1566d3beeddSMatthew Knepley idx = (*vi++); 1576d3beeddSMatthew Knepley x1 = x[idx]; 1586d3beeddSMatthew Knepley s1 -= v[0]*x1; 1596d3beeddSMatthew Knepley v += 1; 1606d3beeddSMatthew Knepley } 1616d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 1626d3beeddSMatthew Knepley idiag += 1; 1636d3beeddSMatthew Knepley i2 += 1; 1646d3beeddSMatthew Knepley } 1656d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 1666d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1676d3beeddSMatthew Knepley } 1686d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 1696d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1706d3beeddSMatthew Knepley i2 = 0; 1716d3beeddSMatthew Knepley mdiag = a->idiag+a->mbs; 1726d3beeddSMatthew Knepley for (i=0; i<m; i++) { 1736d3beeddSMatthew Knepley x1 = x[i2]; 1746d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1; 1756d3beeddSMatthew Knepley mdiag += 1; 1766d3beeddSMatthew Knepley i2 += 1; 1776d3beeddSMatthew Knepley } 1786d3beeddSMatthew Knepley ierr = PetscLogFlops(m);CHKERRQ(ierr); 1796d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 180d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 1816d3beeddSMatthew Knepley } 1826d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 1836d3beeddSMatthew Knepley idiag = a->idiag+a->mbs - 1; 1846d3beeddSMatthew Knepley i2 = m - 1; 1856d3beeddSMatthew Knepley x1 = x[i2]; 1866d3beeddSMatthew Knepley x[i2] = idiag[0]*x1; 1876d3beeddSMatthew Knepley idiag -= 1; 1886d3beeddSMatthew Knepley i2 -= 1; 1896d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 1906d3beeddSMatthew Knepley v = aa + (diag[i]+1); 1916d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 1926d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 1936d3beeddSMatthew Knepley s1 = x[i2]; 1946d3beeddSMatthew Knepley while (nz--) { 1956d3beeddSMatthew Knepley idx = (*vi++); 1966d3beeddSMatthew Knepley x1 = x[idx]; 1976d3beeddSMatthew Knepley s1 -= v[0]*x1; 1986d3beeddSMatthew Knepley v += 1; 1996d3beeddSMatthew Knepley } 2006d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 2016d3beeddSMatthew Knepley idiag -= 2; 2026d3beeddSMatthew Knepley i2 -= 1; 2036d3beeddSMatthew Knepley } 2046d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 2056d3beeddSMatthew Knepley } 2066d3beeddSMatthew Knepley } else { 2076d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 2086d3beeddSMatthew Knepley } 2096d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2106d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 2116d3beeddSMatthew Knepley PetscFunctionReturn(0); 2126d3beeddSMatthew Knepley } 2136d3beeddSMatthew Knepley 2146d3beeddSMatthew Knepley #undef __FUNCT__ 215b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2" 216c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 217b01c7715SBarry Smith { 218b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 219b01c7715SBarry Smith PetscScalar *x,x1,x2,s1,s2; 220dd6ea824SBarry Smith const PetscScalar *b; 221dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 222dfbe8321SBarry Smith PetscErrorCode ierr; 223c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 224c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 225b01c7715SBarry Smith 226b01c7715SBarry Smith PetscFunctionBegin; 22751f519a2SBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 228b01c7715SBarry Smith its = its*lits; 22977431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 230b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 231b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 23271f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 233b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 234b01c7715SBarry Smith 235b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 236b01c7715SBarry Smith 237b01c7715SBarry Smith diag = a->diag; 238b01c7715SBarry Smith idiag = a->idiag; 2391ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2401ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 241b01c7715SBarry Smith 242b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 243b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 244b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[2]; 245b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[3]; 246b01c7715SBarry Smith i2 = 2; 247b01c7715SBarry Smith idiag += 4; 248b01c7715SBarry Smith for (i=1; i<m; i++) { 249b01c7715SBarry Smith v = aa + 4*ai[i]; 250b01c7715SBarry Smith vi = aj + ai[i]; 251b01c7715SBarry Smith nz = diag[i] - ai[i]; 252b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; 253b01c7715SBarry Smith while (nz--) { 254b01c7715SBarry Smith idx = 2*(*vi++); 255b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 256b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 257b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 258b01c7715SBarry Smith v += 4; 259b01c7715SBarry Smith } 260b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 261b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 262b01c7715SBarry Smith idiag += 4; 263b01c7715SBarry Smith i2 += 2; 264b01c7715SBarry Smith } 265b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 266efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 267b01c7715SBarry Smith } 268b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 269b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 270b01c7715SBarry Smith i2 = 0; 271b01c7715SBarry Smith mdiag = a->idiag+4*a->mbs; 272b01c7715SBarry Smith for (i=0; i<m; i++) { 273b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 274b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[2]*x2; 275b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2; 276b01c7715SBarry Smith mdiag += 4; 277b01c7715SBarry Smith i2 += 2; 278b01c7715SBarry Smith } 279efee365bSSatish Balay ierr = PetscLogFlops(6*m);CHKERRQ(ierr); 280b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 281d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 282b01c7715SBarry Smith } 283b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 284b01c7715SBarry Smith idiag = a->idiag+4*a->mbs - 4; 285b01c7715SBarry Smith i2 = 2*m - 2; 286b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 287b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[2]*x2; 288b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[3]*x2; 289b01c7715SBarry Smith idiag -= 4; 290b01c7715SBarry Smith i2 -= 2; 291b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 292b01c7715SBarry Smith v = aa + 4*(diag[i]+1); 293b01c7715SBarry Smith vi = aj + diag[i] + 1; 294b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 295b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; 296b01c7715SBarry Smith while (nz--) { 297b01c7715SBarry Smith idx = 2*(*vi++); 298b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 299b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 300b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 301b01c7715SBarry Smith v += 4; 302b01c7715SBarry Smith } 303b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 304b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 305b01c7715SBarry Smith idiag -= 4; 306b01c7715SBarry Smith i2 -= 2; 307b01c7715SBarry Smith } 308efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 309b01c7715SBarry Smith } 310b01c7715SBarry Smith } else { 311634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 312b01c7715SBarry Smith } 3131ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3141ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 315b01c7715SBarry Smith PetscFunctionReturn(0); 316b01c7715SBarry Smith } 317b01c7715SBarry Smith 318b01c7715SBarry Smith #undef __FUNCT__ 319b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3" 320c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 321b01c7715SBarry Smith { 322b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 323b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,s1,s2,s3; 324dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 325dd6ea824SBarry Smith const PetscScalar *b; 326dfbe8321SBarry Smith PetscErrorCode ierr; 327c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 328c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 329b01c7715SBarry Smith 330b01c7715SBarry Smith PetscFunctionBegin; 331b01c7715SBarry Smith its = its*lits; 33271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 33377431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 334b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 335b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 33671f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 337b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 338b01c7715SBarry Smith 339b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 340b01c7715SBarry Smith 341b01c7715SBarry Smith diag = a->diag; 342b01c7715SBarry Smith idiag = a->idiag; 3431ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3441ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 345b01c7715SBarry Smith 346b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 347b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 348b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6]; 349b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7]; 350b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8]; 351b01c7715SBarry Smith i2 = 3; 352b01c7715SBarry Smith idiag += 9; 353b01c7715SBarry Smith for (i=1; i<m; i++) { 354b01c7715SBarry Smith v = aa + 9*ai[i]; 355b01c7715SBarry Smith vi = aj + ai[i]; 356b01c7715SBarry Smith nz = diag[i] - ai[i]; 357b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; 358b01c7715SBarry Smith while (nz--) { 359b01c7715SBarry Smith idx = 3*(*vi++); 360b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; 361b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 362b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 363b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 364b01c7715SBarry Smith v += 9; 365b01c7715SBarry Smith } 366b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 367b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 368b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 369b01c7715SBarry Smith idiag += 9; 370b01c7715SBarry Smith i2 += 3; 371b01c7715SBarry Smith } 372b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 373efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 374b01c7715SBarry Smith } 375b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 376b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 377b01c7715SBarry Smith i2 = 0; 378b01c7715SBarry Smith mdiag = a->idiag+9*a->mbs; 379b01c7715SBarry Smith for (i=0; i<m; i++) { 380b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 381b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3; 382b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3; 383b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3; 384b01c7715SBarry Smith mdiag += 9; 385b01c7715SBarry Smith i2 += 3; 386b01c7715SBarry Smith } 387efee365bSSatish Balay ierr = PetscLogFlops(15*m);CHKERRQ(ierr); 388b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 389d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 390b01c7715SBarry Smith } 391b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 392b01c7715SBarry Smith idiag = a->idiag+9*a->mbs - 9; 393b01c7715SBarry Smith i2 = 3*m - 3; 394b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 395b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3; 396b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3; 397b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3; 398b01c7715SBarry Smith idiag -= 9; 399b01c7715SBarry Smith i2 -= 3; 400b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 401b01c7715SBarry Smith v = aa + 9*(diag[i]+1); 402b01c7715SBarry Smith vi = aj + diag[i] + 1; 403b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 404b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; 405b01c7715SBarry Smith while (nz--) { 406b01c7715SBarry Smith idx = 3*(*vi++); 407b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; 408b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 409b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 410b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 411b01c7715SBarry Smith v += 9; 412b01c7715SBarry Smith } 413b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 414b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 415b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 416b01c7715SBarry Smith idiag -= 9; 417b01c7715SBarry Smith i2 -= 3; 418b01c7715SBarry Smith } 419efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 420b01c7715SBarry Smith } 421b01c7715SBarry Smith } else { 422634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 423b01c7715SBarry Smith } 4241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 4251ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 426b01c7715SBarry Smith PetscFunctionReturn(0); 427b01c7715SBarry Smith } 428b01c7715SBarry Smith 429b01c7715SBarry Smith #undef __FUNCT__ 430b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4" 431c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 432b01c7715SBarry Smith { 433b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 434b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,s1,s2,s3,s4; 435dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 436dd6ea824SBarry Smith const PetscScalar *b; 437dfbe8321SBarry Smith PetscErrorCode ierr; 438c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 439c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 440b01c7715SBarry Smith 441b01c7715SBarry Smith PetscFunctionBegin; 44271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 443b01c7715SBarry Smith its = its*lits; 44477431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 445b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 446b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 44771f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 448b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 449b01c7715SBarry Smith 450b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 451b01c7715SBarry Smith 452b01c7715SBarry Smith diag = a->diag; 453b01c7715SBarry Smith idiag = a->idiag; 4541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4551ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 456b01c7715SBarry Smith 457b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 458b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 459b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8] + b[3]*idiag[12]; 460b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9] + b[3]*idiag[13]; 461b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14]; 462b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15]; 463b01c7715SBarry Smith i2 = 4; 464b01c7715SBarry Smith idiag += 16; 465b01c7715SBarry Smith for (i=1; i<m; i++) { 466b01c7715SBarry Smith v = aa + 16*ai[i]; 467b01c7715SBarry Smith vi = aj + ai[i]; 468b01c7715SBarry Smith nz = diag[i] - ai[i]; 469b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; 470b01c7715SBarry Smith while (nz--) { 471b01c7715SBarry Smith idx = 4*(*vi++); 472b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 473b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 474b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 475b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 476b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 477b01c7715SBarry Smith v += 16; 478b01c7715SBarry Smith } 479b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 480b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 481b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 482b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 483b01c7715SBarry Smith idiag += 16; 484b01c7715SBarry Smith i2 += 4; 485b01c7715SBarry Smith } 486b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 487efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 488b01c7715SBarry Smith } 489b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 490b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 491b01c7715SBarry Smith i2 = 0; 492b01c7715SBarry Smith mdiag = a->idiag+16*a->mbs; 493b01c7715SBarry Smith for (i=0; i<m; i++) { 494b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 495b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3 + mdiag[12]*x4; 496b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3 + mdiag[13]*x4; 497b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4; 498b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4; 499b01c7715SBarry Smith mdiag += 16; 500b01c7715SBarry Smith i2 += 4; 501b01c7715SBarry Smith } 502efee365bSSatish Balay ierr = PetscLogFlops(28*m);CHKERRQ(ierr); 503b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 504d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 505b01c7715SBarry Smith } 506b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 507b01c7715SBarry Smith idiag = a->idiag+16*a->mbs - 16; 508b01c7715SBarry Smith i2 = 4*m - 4; 509b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 510b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3 + idiag[12]*x4; 511b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3 + idiag[13]*x4; 512b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4; 513b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4; 514b01c7715SBarry Smith idiag -= 16; 515b01c7715SBarry Smith i2 -= 4; 516b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 517b01c7715SBarry Smith v = aa + 16*(diag[i]+1); 518b01c7715SBarry Smith vi = aj + diag[i] + 1; 519b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 520b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; 521b01c7715SBarry Smith while (nz--) { 522b01c7715SBarry Smith idx = 4*(*vi++); 523b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 524b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 525b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 526b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 527b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 528b01c7715SBarry Smith v += 16; 529b01c7715SBarry Smith } 530b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 531b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 532b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 533b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 534b01c7715SBarry Smith idiag -= 16; 535b01c7715SBarry Smith i2 -= 4; 536b01c7715SBarry Smith } 537efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 538b01c7715SBarry Smith } 539b01c7715SBarry Smith } else { 540634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 541b01c7715SBarry Smith } 5421ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5431ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 544b01c7715SBarry Smith PetscFunctionReturn(0); 545b01c7715SBarry Smith } 546b01c7715SBarry Smith 547b01c7715SBarry Smith #undef __FUNCT__ 548b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5" 549c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 550b01c7715SBarry Smith { 551b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 552b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5; 553dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 554dd6ea824SBarry Smith const PetscScalar *b; 555dfbe8321SBarry Smith PetscErrorCode ierr; 556c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 557c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 558b01c7715SBarry Smith 559b01c7715SBarry Smith PetscFunctionBegin; 56071f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 561b01c7715SBarry Smith its = its*lits; 56277431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 563b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 564b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 56571f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 566b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 567b01c7715SBarry Smith 568b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 569b01c7715SBarry Smith 570b01c7715SBarry Smith diag = a->diag; 571b01c7715SBarry Smith idiag = a->idiag; 5721ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5731ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 574b01c7715SBarry Smith 575b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 576b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 577b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20]; 578b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21]; 579b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22]; 580b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23]; 581b01c7715SBarry Smith x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24]; 582b01c7715SBarry Smith i2 = 5; 583b01c7715SBarry Smith idiag += 25; 584b01c7715SBarry Smith for (i=1; i<m; i++) { 585b01c7715SBarry Smith v = aa + 25*ai[i]; 586b01c7715SBarry Smith vi = aj + ai[i]; 587b01c7715SBarry Smith nz = diag[i] - ai[i]; 588b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; 589b01c7715SBarry Smith while (nz--) { 590b01c7715SBarry Smith idx = 5*(*vi++); 591b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 592b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 593b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 594b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 595b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 596b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 597b01c7715SBarry Smith v += 25; 598b01c7715SBarry Smith } 599b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 600b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 601b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 602b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 603b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 604b01c7715SBarry Smith idiag += 25; 605b01c7715SBarry Smith i2 += 5; 606b01c7715SBarry Smith } 607b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 608efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 609b01c7715SBarry Smith } 610b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 611b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 612b01c7715SBarry Smith i2 = 0; 613b01c7715SBarry Smith mdiag = a->idiag+25*a->mbs; 614b01c7715SBarry Smith for (i=0; i<m; i++) { 615b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 616b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5; 617b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5; 618b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5; 619b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5; 620b01c7715SBarry Smith x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5; 621b01c7715SBarry Smith mdiag += 25; 622b01c7715SBarry Smith i2 += 5; 623b01c7715SBarry Smith } 624efee365bSSatish Balay ierr = PetscLogFlops(45*m);CHKERRQ(ierr); 625b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 626d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 627b01c7715SBarry Smith } 628b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 629b01c7715SBarry Smith idiag = a->idiag+25*a->mbs - 25; 630b01c7715SBarry Smith i2 = 5*m - 5; 631b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 632b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5; 633b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5; 634b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5; 635b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5; 636b01c7715SBarry Smith x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5; 637b01c7715SBarry Smith idiag -= 25; 638b01c7715SBarry Smith i2 -= 5; 639b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 640b01c7715SBarry Smith v = aa + 25*(diag[i]+1); 641b01c7715SBarry Smith vi = aj + diag[i] + 1; 642b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 643b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; 644b01c7715SBarry Smith while (nz--) { 645b01c7715SBarry Smith idx = 5*(*vi++); 646b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 647b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 648b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 649b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 650b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 651b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 652b01c7715SBarry Smith v += 25; 653b01c7715SBarry Smith } 654b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 655b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 656b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 657b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 658b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 659b01c7715SBarry Smith idiag -= 25; 660b01c7715SBarry Smith i2 -= 5; 661b01c7715SBarry Smith } 662efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 663b01c7715SBarry Smith } 664b01c7715SBarry Smith } else { 665634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 666b01c7715SBarry Smith } 6671ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 6681ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 669b01c7715SBarry Smith PetscFunctionReturn(0); 670b01c7715SBarry Smith } 671b01c7715SBarry Smith 6726d3beeddSMatthew Knepley #undef __FUNCT__ 6736d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6" 6746d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 6756d3beeddSMatthew Knepley { 6766d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 6776d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6; 678dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 679dd6ea824SBarry Smith const PetscScalar *b; 6806d3beeddSMatthew Knepley PetscErrorCode ierr; 6816d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 6826d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 6836d3beeddSMatthew Knepley 6846d3beeddSMatthew Knepley PetscFunctionBegin; 6856d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 6866d3beeddSMatthew Knepley its = its*lits; 6876d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 6886d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 6896d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 6906d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 6916d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 6926d3beeddSMatthew Knepley 6936d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 6946d3beeddSMatthew Knepley 6956d3beeddSMatthew Knepley diag = a->diag; 6966d3beeddSMatthew Knepley idiag = a->idiag; 6976d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 6986d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 6996d3beeddSMatthew Knepley 7006d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 7016d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 7026d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[6] + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30]; 7036d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[7] + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31]; 7046d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[8] + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32]; 7056d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[9] + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33]; 7066d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34]; 7076d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35]; 7086d3beeddSMatthew Knepley i2 = 6; 7096d3beeddSMatthew Knepley idiag += 36; 7106d3beeddSMatthew Knepley for (i=1; i<m; i++) { 7116d3beeddSMatthew Knepley v = aa + 36*ai[i]; 7126d3beeddSMatthew Knepley vi = aj + ai[i]; 7136d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 7146d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; 7156d3beeddSMatthew Knepley while (nz--) { 7166d3beeddSMatthew Knepley idx = 6*(*vi++); 7176d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7186d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7196d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7206d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7216d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7226d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7236d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7246d3beeddSMatthew Knepley v += 36; 7256d3beeddSMatthew Knepley } 7266d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7276d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7286d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7296d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7306d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7316d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7326d3beeddSMatthew Knepley idiag += 36; 7336d3beeddSMatthew Knepley i2 += 6; 7346d3beeddSMatthew Knepley } 7356d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 7366d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7376d3beeddSMatthew Knepley } 7386d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 7396d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 7406d3beeddSMatthew Knepley i2 = 0; 7416d3beeddSMatthew Knepley mdiag = a->idiag+36*a->mbs; 7426d3beeddSMatthew Knepley for (i=0; i<m; i++) { 7436d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7446d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[6]*x2 + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6; 7456d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2 + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6; 7466d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2 + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6; 7476d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2 + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6; 7486d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6; 7496d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6; 7506d3beeddSMatthew Knepley mdiag += 36; 7516d3beeddSMatthew Knepley i2 += 6; 7526d3beeddSMatthew Knepley } 7536d3beeddSMatthew Knepley ierr = PetscLogFlops(60*m);CHKERRQ(ierr); 7546d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 755d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 7566d3beeddSMatthew Knepley } 7576d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 7586d3beeddSMatthew Knepley idiag = a->idiag+36*a->mbs - 36; 7596d3beeddSMatthew Knepley i2 = 6*m - 6; 7606d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7616d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[6]*x2 + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6; 7626d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[7]*x2 + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6; 7636d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[8]*x2 + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6; 7646d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[9]*x2 + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6; 7656d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6; 7666d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6; 7676d3beeddSMatthew Knepley idiag -= 36; 7686d3beeddSMatthew Knepley i2 -= 6; 7696d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 7706d3beeddSMatthew Knepley v = aa + 36*(diag[i]+1); 7716d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 7726d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 7736d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; 7746d3beeddSMatthew Knepley while (nz--) { 7756d3beeddSMatthew Knepley idx = 6*(*vi++); 7766d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7776d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7786d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7796d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7806d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7816d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7826d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7836d3beeddSMatthew Knepley v += 36; 7846d3beeddSMatthew Knepley } 7856d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7866d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7876d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7886d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7896d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7906d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7916d3beeddSMatthew Knepley idiag -= 36; 7926d3beeddSMatthew Knepley i2 -= 6; 7936d3beeddSMatthew Knepley } 7946d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7956d3beeddSMatthew Knepley } 7966d3beeddSMatthew Knepley } else { 7976d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 7986d3beeddSMatthew Knepley } 7996d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 8006d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8016d3beeddSMatthew Knepley PetscFunctionReturn(0); 8026d3beeddSMatthew Knepley } 8036d3beeddSMatthew Knepley 8046d3beeddSMatthew Knepley #undef __FUNCT__ 8056d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7" 8066d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 8076d3beeddSMatthew Knepley { 8086d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 8096d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7; 810dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 811dd6ea824SBarry Smith const PetscScalar *b; 8126d3beeddSMatthew Knepley PetscErrorCode ierr; 8136d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 8146d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 8156d3beeddSMatthew Knepley 8166d3beeddSMatthew Knepley PetscFunctionBegin; 8176d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 8186d3beeddSMatthew Knepley its = its*lits; 8196d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 8206d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 8216d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 8226d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 8236d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 8246d3beeddSMatthew Knepley 8256d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 8266d3beeddSMatthew Knepley 8276d3beeddSMatthew Knepley diag = a->diag; 8286d3beeddSMatthew Knepley idiag = a->idiag; 8296d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 8306d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8316d3beeddSMatthew Knepley 8326d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 8336d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 8346d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[7] + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42]; 8356d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[8] + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43]; 8366d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[9] + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44]; 8376d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45]; 8386d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46]; 8396d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47]; 8406d3beeddSMatthew Knepley x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48]; 8416d3beeddSMatthew Knepley i2 = 7; 8426d3beeddSMatthew Knepley idiag += 49; 8436d3beeddSMatthew Knepley for (i=1; i<m; i++) { 8446d3beeddSMatthew Knepley v = aa + 49*ai[i]; 8456d3beeddSMatthew Knepley vi = aj + ai[i]; 8466d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 8476d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6]; 8486d3beeddSMatthew Knepley while (nz--) { 8496d3beeddSMatthew Knepley idx = 7*(*vi++); 8506d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 8516d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 8526d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 8536d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 8546d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 8556d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 8566d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 8576d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 8586d3beeddSMatthew Knepley v += 49; 8596d3beeddSMatthew Knepley } 8606d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 8616d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 8626d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 8636d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 8646d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 8656d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 8666d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 8676d3beeddSMatthew Knepley idiag += 49; 8686d3beeddSMatthew Knepley i2 += 7; 8696d3beeddSMatthew Knepley } 8706d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 8716d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 8726d3beeddSMatthew Knepley } 8736d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 8746d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 8756d3beeddSMatthew Knepley i2 = 0; 8766d3beeddSMatthew Knepley mdiag = a->idiag+49*a->mbs; 8776d3beeddSMatthew Knepley for (i=0; i<m; i++) { 8786d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8796d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[7]*x2 + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7; 8806d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2 + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7; 8816d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2 + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7; 8826d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7; 8836d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7; 8846d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7; 8856d3beeddSMatthew Knepley x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7; 8866d3beeddSMatthew Knepley mdiag += 36; 8876d3beeddSMatthew Knepley i2 += 6; 8886d3beeddSMatthew Knepley } 8896d3beeddSMatthew Knepley ierr = PetscLogFlops(93*m);CHKERRQ(ierr); 8906d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 891d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 8926d3beeddSMatthew Knepley } 8936d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 8946d3beeddSMatthew Knepley idiag = a->idiag+49*a->mbs - 49; 8956d3beeddSMatthew Knepley i2 = 7*m - 7; 8966d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8976d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[7]*x2 + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7; 8986d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[8]*x2 + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7; 8996d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[9]*x2 + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7; 9006d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7; 9016d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7; 9026d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7; 9036d3beeddSMatthew Knepley x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7; 9046d3beeddSMatthew Knepley idiag -= 49; 9056d3beeddSMatthew Knepley i2 -= 7; 9066d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 9076d3beeddSMatthew Knepley v = aa + 49*(diag[i]+1); 9086d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 9096d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 9106d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6]; 9116d3beeddSMatthew Knepley while (nz--) { 9126d3beeddSMatthew Knepley idx = 7*(*vi++); 9136d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 9146d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 9156d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 9166d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 9176d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 9186d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 9196d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 9206d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 9216d3beeddSMatthew Knepley v += 49; 9226d3beeddSMatthew Knepley } 9236d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 9246d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 9256d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 9266d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 9276d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 9286d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 9296d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 9306d3beeddSMatthew Knepley idiag -= 49; 9316d3beeddSMatthew Knepley i2 -= 7; 9326d3beeddSMatthew Knepley } 9336d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 9346d3beeddSMatthew Knepley } 9356d3beeddSMatthew Knepley } else { 9366d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 9376d3beeddSMatthew Knepley } 9386d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 9396d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 9406d3beeddSMatthew Knepley PetscFunctionReturn(0); 9416d3beeddSMatthew Knepley } 9426d3beeddSMatthew Knepley 943af674e45SBarry Smith /* 94481824310SBarry Smith Special version for direct calls from Fortran (Used in PETSc-fun3d) 945af674e45SBarry Smith */ 946af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 947af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 948af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 949af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4 950af674e45SBarry Smith #endif 951af674e45SBarry Smith 9529c8c1041SBarry Smith EXTERN_C_BEGIN 953af674e45SBarry Smith #undef __FUNCT__ 954af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_" 955be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[]) 956af674e45SBarry Smith { 957af674e45SBarry Smith Mat A = *AA; 958af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 959c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn; 960c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 96117ec6a02SBarry Smith PetscInt *aj=a->j,stepval,lastcol = -1; 962f15d580aSBarry Smith const PetscScalar *value = v; 9634bb09213Spetsc MatScalar *ap,*aa = a->a,*bap; 964af674e45SBarry Smith 965af674e45SBarry Smith PetscFunctionBegin; 966d0f46423SBarry Smith if (A->rmap->bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4"); 967af674e45SBarry Smith stepval = (n-1)*4; 968af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 969af674e45SBarry Smith row = im[k]; 970af674e45SBarry Smith rp = aj + ai[row]; 971af674e45SBarry Smith ap = aa + 16*ai[row]; 972af674e45SBarry Smith nrow = ailen[row]; 973af674e45SBarry Smith low = 0; 97417ec6a02SBarry Smith high = nrow; 975af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 976af674e45SBarry Smith col = in[l]; 97717ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 97817ec6a02SBarry Smith lastcol = col; 9791e3347e8SBarry Smith value = v + k*(stepval+4 + l)*4; 980af674e45SBarry Smith while (high-low > 7) { 981af674e45SBarry Smith t = (low+high)/2; 982af674e45SBarry Smith if (rp[t] > col) high = t; 983af674e45SBarry Smith else low = t; 984af674e45SBarry Smith } 985af674e45SBarry Smith for (i=low; i<high; i++) { 986af674e45SBarry Smith if (rp[i] > col) break; 987af674e45SBarry Smith if (rp[i] == col) { 988af674e45SBarry Smith bap = ap + 16*i; 989af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 990af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 991af674e45SBarry Smith bap[jj] += *value++; 992af674e45SBarry Smith } 993af674e45SBarry Smith } 994af674e45SBarry Smith goto noinsert2; 995af674e45SBarry Smith } 996af674e45SBarry Smith } 997af674e45SBarry Smith N = nrow++ - 1; 99817ec6a02SBarry Smith high++; /* added new column index thus must search to one higher than before */ 999af674e45SBarry Smith /* shift up all the later entries in this row */ 1000af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1001af674e45SBarry Smith rp[ii+1] = rp[ii]; 1002a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1003af674e45SBarry Smith } 1004af674e45SBarry Smith if (N >= i) { 1005a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1006af674e45SBarry Smith } 1007af674e45SBarry Smith rp[i] = col; 1008af674e45SBarry Smith bap = ap + 16*i; 1009af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 1010af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 1011af674e45SBarry Smith bap[jj] = *value++; 1012af674e45SBarry Smith } 1013af674e45SBarry Smith } 1014af674e45SBarry Smith noinsert2:; 1015af674e45SBarry Smith low = i; 1016af674e45SBarry Smith } 1017af674e45SBarry Smith ailen[row] = nrow; 1018af674e45SBarry Smith } 1019be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1020af674e45SBarry Smith } 10219c8c1041SBarry Smith EXTERN_C_END 1022af674e45SBarry Smith 1023af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 1024af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4 1025af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1026af674e45SBarry Smith #define matsetvalues4_ matsetvalues4 1027af674e45SBarry Smith #endif 1028af674e45SBarry Smith 10299c8c1041SBarry Smith EXTERN_C_BEGIN 1030af674e45SBarry Smith #undef __FUNCT__ 1031af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_" 1032be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v) 1033af674e45SBarry Smith { 1034af674e45SBarry Smith Mat A = *AA; 1035af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1036c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm; 1037c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 1038c1ac3661SBarry Smith PetscInt *aj=a->j,brow,bcol; 103917ec6a02SBarry Smith PetscInt ridx,cidx,lastcol = -1; 1040af674e45SBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 1041af674e45SBarry Smith 1042af674e45SBarry Smith PetscFunctionBegin; 1043af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 1044af674e45SBarry Smith row = im[k]; brow = row/4; 1045af674e45SBarry Smith rp = aj + ai[brow]; 1046af674e45SBarry Smith ap = aa + 16*ai[brow]; 1047af674e45SBarry Smith nrow = ailen[brow]; 1048af674e45SBarry Smith low = 0; 104917ec6a02SBarry Smith high = nrow; 1050af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 1051af674e45SBarry Smith col = in[l]; bcol = col/4; 1052af674e45SBarry Smith ridx = row % 4; cidx = col % 4; 1053af674e45SBarry Smith value = v[l + k*n]; 105417ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 105517ec6a02SBarry Smith lastcol = col; 1056af674e45SBarry Smith while (high-low > 7) { 1057af674e45SBarry Smith t = (low+high)/2; 1058af674e45SBarry Smith if (rp[t] > bcol) high = t; 1059af674e45SBarry Smith else low = t; 1060af674e45SBarry Smith } 1061af674e45SBarry Smith for (i=low; i<high; i++) { 1062af674e45SBarry Smith if (rp[i] > bcol) break; 1063af674e45SBarry Smith if (rp[i] == bcol) { 1064af674e45SBarry Smith bap = ap + 16*i + 4*cidx + ridx; 1065af674e45SBarry Smith *bap += value; 1066af674e45SBarry Smith goto noinsert1; 1067af674e45SBarry Smith } 1068af674e45SBarry Smith } 1069af674e45SBarry Smith N = nrow++ - 1; 107017ec6a02SBarry Smith high++; /* added new column thus must search to one higher than before */ 1071af674e45SBarry Smith /* shift up all the later entries in this row */ 1072af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1073af674e45SBarry Smith rp[ii+1] = rp[ii]; 1074a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1075af674e45SBarry Smith } 1076af674e45SBarry Smith if (N>=i) { 1077a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1078af674e45SBarry Smith } 1079af674e45SBarry Smith rp[i] = bcol; 1080af674e45SBarry Smith ap[16*i + 4*cidx + ridx] = value; 1081af674e45SBarry Smith noinsert1:; 1082af674e45SBarry Smith low = i; 1083af674e45SBarry Smith } 1084af674e45SBarry Smith ailen[brow] = nrow; 1085af674e45SBarry Smith } 1086be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1087af674e45SBarry Smith } 10889c8c1041SBarry Smith EXTERN_C_END 1089af674e45SBarry Smith 1090be5855fcSBarry Smith /* 1091be5855fcSBarry Smith Checks for missing diagonals 1092be5855fcSBarry Smith */ 10934a2ae208SSatish Balay #undef __FUNCT__ 10944a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ" 10952af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d) 1096be5855fcSBarry Smith { 1097be5855fcSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 10986849ba73SBarry Smith PetscErrorCode ierr; 1099c1ac3661SBarry Smith PetscInt *diag,*jj = a->j,i; 1100be5855fcSBarry Smith 1101be5855fcSBarry Smith PetscFunctionBegin; 1102c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 11032af78befSBarry Smith *missing = PETSC_FALSE; 1104883fce79SBarry Smith diag = a->diag; 11050e8e8aceSBarry Smith for (i=0; i<a->mbs; i++) { 1106be5855fcSBarry Smith if (jj[diag[i]] != i) { 11072af78befSBarry Smith *missing = PETSC_TRUE; 11082af78befSBarry Smith if (d) *d = i; 1109be5855fcSBarry Smith } 1110be5855fcSBarry Smith } 1111be5855fcSBarry Smith PetscFunctionReturn(0); 1112be5855fcSBarry Smith } 1113be5855fcSBarry Smith 11144a2ae208SSatish Balay #undef __FUNCT__ 11154a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ" 1116dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1117de6a44a3SBarry Smith { 1118de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 11196849ba73SBarry Smith PetscErrorCode ierr; 112009f38230SBarry Smith PetscInt i,j,m = a->mbs; 1121de6a44a3SBarry Smith 11223a40ed3dSBarry Smith PetscFunctionBegin; 112309f38230SBarry Smith if (!a->diag) { 112409f38230SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr); 112509f38230SBarry Smith } 11267fc0212eSBarry Smith for (i=0; i<m; i++) { 112709f38230SBarry Smith a->diag[i] = a->i[i+1]; 1128de6a44a3SBarry Smith for (j=a->i[i]; j<a->i[i+1]; j++) { 1129de6a44a3SBarry Smith if (a->j[j] == i) { 113009f38230SBarry Smith a->diag[i] = j; 1131de6a44a3SBarry Smith break; 1132de6a44a3SBarry Smith } 1133de6a44a3SBarry Smith } 1134de6a44a3SBarry Smith } 11353a40ed3dSBarry Smith PetscFunctionReturn(0); 1136de6a44a3SBarry Smith } 11372593348eSBarry Smith 11382593348eSBarry Smith 1139690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**); 11403b2fbd54SBarry Smith 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ" 11438f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 11443b2fbd54SBarry Smith { 11453b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1146dfbe8321SBarry Smith PetscErrorCode ierr; 1147d0f46423SBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs,nbs = 1,k,l,cnt; 11488f7157efSSatish Balay PetscInt *tia, *tja; 11493b2fbd54SBarry Smith 11503a40ed3dSBarry Smith PetscFunctionBegin; 11513b2fbd54SBarry Smith *nn = n; 11523a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 11533b2fbd54SBarry Smith if (symmetric) { 11548f7157efSSatish Balay ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr); 1155*553b3c51SBarry Smith nz = tia[n]; 11563b2fbd54SBarry Smith } else { 11578f7157efSSatish Balay tia = a->i; tja = a->j; 11583b2fbd54SBarry Smith } 11593b2fbd54SBarry Smith 1160ecc77c7aSBarry Smith if (!blockcompressed && bs > 1) { 1161ecc77c7aSBarry Smith (*nn) *= bs; 1162ecc77c7aSBarry Smith nbs = bs; 11638f7157efSSatish Balay /* malloc & create the natural set of indices */ 1164ecc77c7aSBarry Smith ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr); 11659985e31cSBarry Smith if (n) { 1166ecc77c7aSBarry Smith (*ia)[0] = 0; 1167ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1168ecc77c7aSBarry Smith (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 1169ecc77c7aSBarry Smith } 11709985e31cSBarry Smith } 1171ecc77c7aSBarry Smith 1172ecc77c7aSBarry Smith for (i=1; i<n; i++) { 1173ecc77c7aSBarry Smith (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1174ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1175ecc77c7aSBarry Smith (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 11768f7157efSSatish Balay } 11778f7157efSSatish Balay } 11789985e31cSBarry Smith if (n) { 1179ecc77c7aSBarry Smith (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 11809985e31cSBarry Smith } 1181ecc77c7aSBarry Smith 11829985e31cSBarry Smith if (ja) { 11839985e31cSBarry Smith ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr); 11849985e31cSBarry Smith cnt = 0; 11859985e31cSBarry Smith for (i=0; i<n; i++) { 11869985e31cSBarry Smith for (j=0; j<bs; j++) { 11879985e31cSBarry Smith for (k=tia[i]; k<tia[i+1]; k++) { 11889985e31cSBarry Smith for (l=0; l<bs; l++) { 11899985e31cSBarry Smith (*ja)[cnt++] = bs*tja[k] + l; 11909985e31cSBarry Smith } 11919985e31cSBarry Smith } 11929985e31cSBarry Smith } 11939985e31cSBarry Smith } 11949985e31cSBarry Smith } 11959985e31cSBarry Smith 1196ecc77c7aSBarry Smith n *= bs; 1197ecc77c7aSBarry Smith nz *= bs*bs; 11988f7157efSSatish Balay if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 11998f7157efSSatish Balay ierr = PetscFree(tia);CHKERRQ(ierr); 12008f7157efSSatish Balay ierr = PetscFree(tja);CHKERRQ(ierr); 12018f7157efSSatish Balay } 12028f7157efSSatish Balay } else { 12038f7157efSSatish Balay *ia = tia; 1204ecc77c7aSBarry Smith if (ja) *ja = tja; 12058f7157efSSatish Balay } 12068f7157efSSatish Balay if (oshift == 1) { 1207ecc77c7aSBarry Smith for (i=0; i<n+nbs; i++) (*ia)[i]++; 1208ecc77c7aSBarry Smith if (ja) for (i=0; i<nz; i++) (*ja)[i]++; 12098f7157efSSatish Balay } 12103a40ed3dSBarry Smith PetscFunctionReturn(0); 12113b2fbd54SBarry Smith } 12123b2fbd54SBarry Smith 12134a2ae208SSatish Balay #undef __FUNCT__ 12144a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ" 12158f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 12163b2fbd54SBarry Smith { 12173b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 12186849ba73SBarry Smith PetscErrorCode ierr; 12198f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 12203b2fbd54SBarry Smith 12213a40ed3dSBarry Smith PetscFunctionBegin; 12223a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 1223d0f46423SBarry Smith if (!blockcompressed && A->rmap->bs > 1) { 1224ecc77c7aSBarry Smith ierr = PetscFree(*ia);CHKERRQ(ierr); 12259985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12268f7157efSSatish Balay } else if (symmetric) { 1227606d414cSSatish Balay ierr = PetscFree(*ia);CHKERRQ(ierr); 12289985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12298f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 12303b2fbd54SBarry Smith for (i=0; i<n+1; i++) a->i[i]--; 12319985e31cSBarry Smith if (ja) {for (i=0; i<nz; i++) a->j[i]--;} 12323b2fbd54SBarry Smith } 12333a40ed3dSBarry Smith PetscFunctionReturn(0); 12343b2fbd54SBarry Smith } 12353b2fbd54SBarry Smith 12364a2ae208SSatish Balay #undef __FUNCT__ 12374a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ" 1238dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 12392d61bbb3SSatish Balay { 12402d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1241dfbe8321SBarry Smith PetscErrorCode ierr; 12422d61bbb3SSatish Balay 1243433994e6SBarry Smith PetscFunctionBegin; 1244aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1245d0f46423SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz); 12462d61bbb3SSatish Balay #endif 1247e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1248c38d4ed2SBarry Smith if (a->row) { 1249c38d4ed2SBarry Smith ierr = ISDestroy(a->row);CHKERRQ(ierr); 1250c38d4ed2SBarry Smith } 1251c38d4ed2SBarry Smith if (a->col) { 1252c38d4ed2SBarry Smith ierr = ISDestroy(a->col);CHKERRQ(ierr); 1253c38d4ed2SBarry Smith } 125405b42c5fSBarry Smith ierr = PetscFree(a->diag);CHKERRQ(ierr); 125505b42c5fSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 125605b42c5fSBarry Smith ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr); 125705b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 125805b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 1259e51c0b9cSSatish Balay if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);} 126005b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 126105b42c5fSBarry Smith ierr = PetscFree(a->xtoy);CHKERRQ(ierr); 126273e7a558SHong Zhang if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);} 1263c4319e64SHong Zhang 126470e08fbdSBarry Smith if (a->sbaijMat) {ierr = MatDestroy(a->sbaijMat);CHKERRQ(ierr);} 1265606d414cSSatish Balay ierr = PetscFree(a);CHKERRQ(ierr); 1266901853e0SKris Buschelman 1267dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 126843516a2dSKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr); 1269901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1270901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1271901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr); 1272901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr); 1273901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr); 1274901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1275725b52f3SLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 12762d61bbb3SSatish Balay PetscFunctionReturn(0); 12772d61bbb3SSatish Balay } 12782d61bbb3SSatish Balay 12794a2ae208SSatish Balay #undef __FUNCT__ 12804a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ" 12814e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg) 12822d61bbb3SSatish Balay { 12832d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 128463ba0a88SBarry Smith PetscErrorCode ierr; 12852d61bbb3SSatish Balay 12862d61bbb3SSatish Balay PetscFunctionBegin; 1287aa275fccSKris Buschelman switch (op) { 1288aa275fccSKris Buschelman case MAT_ROW_ORIENTED: 12894e0d8c25SBarry Smith a->roworiented = flg; 1290aa275fccSKris Buschelman break; 1291aa275fccSKris Buschelman case MAT_KEEP_ZEROED_ROWS: 12924e0d8c25SBarry Smith a->keepzeroedrows = flg; 1293aa275fccSKris Buschelman break; 1294512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1295512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1296aa275fccSKris Buschelman break; 1297aa275fccSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12984e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1299aa275fccSKris Buschelman break; 1300aa275fccSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 13014e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1302aa275fccSKris Buschelman break; 130328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 130428b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 130528b2fa4aSMatthew Knepley break; 13064e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1307aa275fccSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1308aa275fccSKris Buschelman case MAT_USE_HASH_TABLE: 1309290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1310aa275fccSKris Buschelman break; 131177e54ba9SKris Buschelman case MAT_SYMMETRIC: 131277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13139a4540c5SBarry Smith case MAT_HERMITIAN: 13149a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1315290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 131677e54ba9SKris Buschelman break; 1317aa275fccSKris Buschelman default: 1318ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 13192d61bbb3SSatish Balay } 13202d61bbb3SSatish Balay PetscFunctionReturn(0); 13212d61bbb3SSatish Balay } 13222d61bbb3SSatish Balay 13234a2ae208SSatish Balay #undef __FUNCT__ 13244a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ" 1325c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13262d61bbb3SSatish Balay { 13272d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 13286849ba73SBarry Smith PetscErrorCode ierr; 1329c1ac3661SBarry Smith PetscInt itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2; 13303f1db9ecSBarry Smith MatScalar *aa,*aa_i; 133187828ca2SBarry Smith PetscScalar *v_i; 13322d61bbb3SSatish Balay 13332d61bbb3SSatish Balay PetscFunctionBegin; 1334d0f46423SBarry Smith bs = A->rmap->bs; 13352d61bbb3SSatish Balay ai = a->i; 13362d61bbb3SSatish Balay aj = a->j; 13372d61bbb3SSatish Balay aa = a->a; 13382d61bbb3SSatish Balay bs2 = a->bs2; 13392d61bbb3SSatish Balay 1340d0f46423SBarry Smith if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row); 13412d61bbb3SSatish Balay 13422d61bbb3SSatish Balay bn = row/bs; /* Block number */ 13432d61bbb3SSatish Balay bp = row % bs; /* Block Position */ 13442d61bbb3SSatish Balay M = ai[bn+1] - ai[bn]; 13452d61bbb3SSatish Balay *nz = bs*M; 13462d61bbb3SSatish Balay 13472d61bbb3SSatish Balay if (v) { 13482d61bbb3SSatish Balay *v = 0; 13492d61bbb3SSatish Balay if (*nz) { 135087828ca2SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr); 13512d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13522d61bbb3SSatish Balay v_i = *v + i*bs; 13532d61bbb3SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 13542d61bbb3SSatish Balay for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];} 13552d61bbb3SSatish Balay } 13562d61bbb3SSatish Balay } 13572d61bbb3SSatish Balay } 13582d61bbb3SSatish Balay 13592d61bbb3SSatish Balay if (idx) { 13602d61bbb3SSatish Balay *idx = 0; 13612d61bbb3SSatish Balay if (*nz) { 1362c1ac3661SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr); 13632d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13642d61bbb3SSatish Balay idx_i = *idx + i*bs; 13652d61bbb3SSatish Balay itmp = bs*aj[ai[bn] + i]; 13662d61bbb3SSatish Balay for (j=0; j<bs; j++) {idx_i[j] = itmp++;} 13672d61bbb3SSatish Balay } 13682d61bbb3SSatish Balay } 13692d61bbb3SSatish Balay } 13702d61bbb3SSatish Balay PetscFunctionReturn(0); 13712d61bbb3SSatish Balay } 13722d61bbb3SSatish Balay 13734a2ae208SSatish Balay #undef __FUNCT__ 13744a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ" 1375c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13762d61bbb3SSatish Balay { 1377dfbe8321SBarry Smith PetscErrorCode ierr; 1378606d414cSSatish Balay 13792d61bbb3SSatish Balay PetscFunctionBegin; 138005b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 138105b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 13822d61bbb3SSatish Balay PetscFunctionReturn(0); 13832d61bbb3SSatish Balay } 13842d61bbb3SSatish Balay 13854a2ae208SSatish Balay #undef __FUNCT__ 13864a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ" 1387fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B) 13882d61bbb3SSatish Balay { 13892d61bbb3SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; 13902d61bbb3SSatish Balay Mat C; 13916849ba73SBarry Smith PetscErrorCode ierr; 1392d0f46423SBarry Smith PetscInt i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col; 1393c1ac3661SBarry Smith PetscInt *rows,*cols,bs2=a->bs2; 1394dd6ea824SBarry Smith MatScalar *array; 13952d61bbb3SSatish Balay 13962d61bbb3SSatish Balay PetscFunctionBegin; 1397e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1398fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *B) { 1399c1ac3661SBarry Smith ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr); 1400c1ac3661SBarry Smith ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr); 14012d61bbb3SSatish Balay 14022d61bbb3SSatish Balay for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1; 14037adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr); 1404d0f46423SBarry Smith ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr); 14057adad957SLisandro Dalcin ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1406ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr); 1407606d414cSSatish Balay ierr = PetscFree(col);CHKERRQ(ierr); 1408fc4dec0aSBarry Smith } else { 1409fc4dec0aSBarry Smith C = *B; 1410fc4dec0aSBarry Smith } 1411fc4dec0aSBarry Smith 1412fc4dec0aSBarry Smith array = a->a; 1413c1ac3661SBarry Smith ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr); 14142d61bbb3SSatish Balay cols = rows + bs; 14152d61bbb3SSatish Balay for (i=0; i<mbs; i++) { 14162d61bbb3SSatish Balay cols[0] = i*bs; 14172d61bbb3SSatish Balay for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1; 14182d61bbb3SSatish Balay len = ai[i+1] - ai[i]; 14192d61bbb3SSatish Balay for (j=0; j<len; j++) { 14202d61bbb3SSatish Balay rows[0] = (*aj++)*bs; 14212d61bbb3SSatish Balay for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1; 14222d61bbb3SSatish Balay ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr); 14232d61bbb3SSatish Balay array += bs2; 14242d61bbb3SSatish Balay } 14252d61bbb3SSatish Balay } 1426606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 14272d61bbb3SSatish Balay 14282d61bbb3SSatish Balay ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14292d61bbb3SSatish Balay ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14302d61bbb3SSatish Balay 1431815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *B != A) { 14322d61bbb3SSatish Balay *B = C; 14332d61bbb3SSatish Balay } else { 1434273d9f13SBarry Smith ierr = MatHeaderCopy(A,C);CHKERRQ(ierr); 14352d61bbb3SSatish Balay } 14362d61bbb3SSatish Balay PetscFunctionReturn(0); 14372d61bbb3SSatish Balay } 14382d61bbb3SSatish Balay 14394a2ae208SSatish Balay #undef __FUNCT__ 14404a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary" 14416849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer) 14422593348eSBarry Smith { 1443b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 14446849ba73SBarry Smith PetscErrorCode ierr; 1445d0f46423SBarry Smith PetscInt i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2; 1446b24ad042SBarry Smith int fd; 144787828ca2SBarry Smith PetscScalar *aa; 1448ce6f0cecSBarry Smith FILE *file; 14492593348eSBarry Smith 14503a40ed3dSBarry Smith PetscFunctionBegin; 1451b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1452d0f46423SBarry Smith ierr = PetscMalloc((4+A->rmap->N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 1453552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 14543b2fbd54SBarry Smith 1455d0f46423SBarry Smith col_lens[1] = A->rmap->N; 1456d0f46423SBarry Smith col_lens[2] = A->cmap->n; 14577e67e3f9SSatish Balay col_lens[3] = a->nz*bs2; 14582593348eSBarry Smith 14592593348eSBarry Smith /* store lengths of each row and write (including header) to file */ 1460b6490206SBarry Smith count = 0; 1461b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1462b6490206SBarry Smith for (j=0; j<bs; j++) { 1463b6490206SBarry Smith col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 1464b6490206SBarry Smith } 14652593348eSBarry Smith } 1466d0f46423SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1467606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 14682593348eSBarry Smith 14692593348eSBarry Smith /* store column indices (zero start index) */ 1470c1ac3661SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr); 1471b6490206SBarry Smith count = 0; 1472b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1473b6490206SBarry Smith for (j=0; j<bs; j++) { 1474b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1475b6490206SBarry Smith for (l=0; l<bs; l++) { 1476b6490206SBarry Smith jj[count++] = bs*a->j[k] + l; 14772593348eSBarry Smith } 14782593348eSBarry Smith } 1479b6490206SBarry Smith } 1480b6490206SBarry Smith } 14816f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 1482606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 14832593348eSBarry Smith 14842593348eSBarry Smith /* store nonzero values */ 148587828ca2SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 1486b6490206SBarry Smith count = 0; 1487b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1488b6490206SBarry Smith for (j=0; j<bs; j++) { 1489b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1490b6490206SBarry Smith for (l=0; l<bs; l++) { 14917e67e3f9SSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 1492b6490206SBarry Smith } 1493b6490206SBarry Smith } 1494b6490206SBarry Smith } 1495b6490206SBarry Smith } 14966f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1497606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 1498ce6f0cecSBarry Smith 1499b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1500ce6f0cecSBarry Smith if (file) { 1501d0f46423SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 1502ce6f0cecSBarry Smith } 15033a40ed3dSBarry Smith PetscFunctionReturn(0); 15042593348eSBarry Smith } 15052593348eSBarry Smith 15064a2ae208SSatish Balay #undef __FUNCT__ 15074a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII" 15086849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer) 15092593348eSBarry Smith { 1510b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1511dfbe8321SBarry Smith PetscErrorCode ierr; 1512d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 1513f3ef73ceSBarry Smith PetscViewerFormat format; 15142593348eSBarry Smith 15153a40ed3dSBarry Smith PetscFunctionBegin; 1516b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1517456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 151877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 1519fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1520bcd9e38bSBarry Smith Mat aij; 1521ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 1522bcd9e38bSBarry Smith ierr = MatView(aij,viewer);CHKERRQ(ierr); 1523bcd9e38bSBarry Smith ierr = MatDestroy(aij);CHKERRQ(ierr); 152404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 152504929863SHong Zhang PetscFunctionReturn(0); 1526fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1527b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 152844cd7ae7SLois Curfman McInnes for (i=0; i<a->mbs; i++) { 152944cd7ae7SLois Curfman McInnes for (j=0; j<bs; j++) { 153077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 153144cd7ae7SLois Curfman McInnes for (k=a->i[i]; k<a->i[i+1]; k++) { 153244cd7ae7SLois Curfman McInnes for (l=0; l<bs; l++) { 1533aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15340e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1535a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l, 15360e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15370e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1538a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l, 15390e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15400e6d2581SBarry Smith } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1541a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15420ef38995SBarry Smith } 154344cd7ae7SLois Curfman McInnes #else 15440ef38995SBarry Smith if (a->a[bs2*k + l*bs + j] != 0.0) { 1545a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 15460ef38995SBarry Smith } 154744cd7ae7SLois Curfman McInnes #endif 154844cd7ae7SLois Curfman McInnes } 154944cd7ae7SLois Curfman McInnes } 1550b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 155144cd7ae7SLois Curfman McInnes } 155244cd7ae7SLois Curfman McInnes } 1553b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 15540ef38995SBarry Smith } else { 1555b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 1556b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1557b6490206SBarry Smith for (j=0; j<bs; j++) { 155877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 1559b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1560b6490206SBarry Smith for (l=0; l<bs; l++) { 1561aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15620e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 1563a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l, 15640e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15650e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 1566a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l, 15670e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15680ef38995SBarry Smith } else { 1569a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 157088685aaeSLois Curfman McInnes } 157188685aaeSLois Curfman McInnes #else 1572a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 157388685aaeSLois Curfman McInnes #endif 15742593348eSBarry Smith } 15752593348eSBarry Smith } 1576b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 15772593348eSBarry Smith } 15782593348eSBarry Smith } 1579b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 1580b6490206SBarry Smith } 1581b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 15823a40ed3dSBarry Smith PetscFunctionReturn(0); 15832593348eSBarry Smith } 15842593348eSBarry Smith 15854a2ae208SSatish Balay #undef __FUNCT__ 15864a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom" 15876849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 15883270192aSSatish Balay { 158977ed5343SBarry Smith Mat A = (Mat) Aa; 15903270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 15916849ba73SBarry Smith PetscErrorCode ierr; 1592d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 15930e6d2581SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 15943f1db9ecSBarry Smith MatScalar *aa; 1595b0a32e0cSBarry Smith PetscViewer viewer; 15963270192aSSatish Balay 15973a40ed3dSBarry Smith PetscFunctionBegin; 15983270192aSSatish Balay 1599b65db4caSBarry Smith /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/ 160077ed5343SBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 160177ed5343SBarry Smith 1602b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 160377ed5343SBarry Smith 16043270192aSSatish Balay /* loop over matrix elements drawing boxes */ 1605b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 16063270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16073270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1608d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16093270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16103270192aSSatish Balay aa = a->a + j*bs2; 16113270192aSSatish Balay for (k=0; k<bs; k++) { 16123270192aSSatish Balay for (l=0; l<bs; l++) { 16130e6d2581SBarry Smith if (PetscRealPart(*aa++) >= 0.) continue; 1614b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16153270192aSSatish Balay } 16163270192aSSatish Balay } 16173270192aSSatish Balay } 16183270192aSSatish Balay } 1619b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 16203270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16213270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1622d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16233270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16243270192aSSatish Balay aa = a->a + j*bs2; 16253270192aSSatish Balay for (k=0; k<bs; k++) { 16263270192aSSatish Balay for (l=0; l<bs; l++) { 16270e6d2581SBarry Smith if (PetscRealPart(*aa++) != 0.) continue; 1628b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16293270192aSSatish Balay } 16303270192aSSatish Balay } 16313270192aSSatish Balay } 16323270192aSSatish Balay } 16333270192aSSatish Balay 1634b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 16353270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16363270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1637d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16383270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16393270192aSSatish Balay aa = a->a + j*bs2; 16403270192aSSatish Balay for (k=0; k<bs; k++) { 16413270192aSSatish Balay for (l=0; l<bs; l++) { 16420e6d2581SBarry Smith if (PetscRealPart(*aa++) <= 0.) continue; 1643b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16443270192aSSatish Balay } 16453270192aSSatish Balay } 16463270192aSSatish Balay } 16473270192aSSatish Balay } 164877ed5343SBarry Smith PetscFunctionReturn(0); 164977ed5343SBarry Smith } 16503270192aSSatish Balay 16514a2ae208SSatish Balay #undef __FUNCT__ 16524a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw" 16536849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer) 165477ed5343SBarry Smith { 1655dfbe8321SBarry Smith PetscErrorCode ierr; 16560e6d2581SBarry Smith PetscReal xl,yl,xr,yr,w,h; 1657b0a32e0cSBarry Smith PetscDraw draw; 165877ed5343SBarry Smith PetscTruth isnull; 16593270192aSSatish Balay 166077ed5343SBarry Smith PetscFunctionBegin; 166177ed5343SBarry Smith 1662b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1663b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 166477ed5343SBarry Smith 166577ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1666d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 166777ed5343SBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1668b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1669b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 167077ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 16713a40ed3dSBarry Smith PetscFunctionReturn(0); 16723270192aSSatish Balay } 16733270192aSSatish Balay 16744a2ae208SSatish Balay #undef __FUNCT__ 16754a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ" 1676dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer) 16772593348eSBarry Smith { 1678dfbe8321SBarry Smith PetscErrorCode ierr; 167932077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw; 16802593348eSBarry Smith 16813a40ed3dSBarry Smith PetscFunctionBegin; 168232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1683fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1684fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 168532077d6dSBarry Smith if (iascii){ 16863a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 16870f5bd95cSBarry Smith } else if (isbinary) { 16883a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr); 16890f5bd95cSBarry Smith } else if (isdraw) { 16903a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr); 16915cd90555SBarry Smith } else { 1692a5e6ed63SBarry Smith Mat B; 1693ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 1694a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 1695a5e6ed63SBarry Smith ierr = MatDestroy(B);CHKERRQ(ierr); 16962593348eSBarry Smith } 16973a40ed3dSBarry Smith PetscFunctionReturn(0); 16982593348eSBarry Smith } 1699b6490206SBarry Smith 1700cd0e1443SSatish Balay 17014a2ae208SSatish Balay #undef __FUNCT__ 17024a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ" 1703c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1704cd0e1443SSatish Balay { 1705cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1706c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 1707c1ac3661SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 1708d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 170997e567efSBarry Smith MatScalar *ap,*aa = a->a; 1710cd0e1443SSatish Balay 17113a40ed3dSBarry Smith PetscFunctionBegin; 17122d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 1713cd0e1443SSatish Balay row = im[k]; brow = row/bs; 171497e567efSBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 1715d0f46423SBarry Smith if (row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row); 17162d61bbb3SSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 17172c3acbe9SBarry Smith nrow = ailen[brow]; 17182d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 171997e567efSBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 1720d0f46423SBarry Smith if (in[l] >= A->cmap->n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]); 17212d61bbb3SSatish Balay col = in[l] ; 17222d61bbb3SSatish Balay bcol = col/bs; 17232d61bbb3SSatish Balay cidx = col%bs; 17242d61bbb3SSatish Balay ridx = row%bs; 17252d61bbb3SSatish Balay high = nrow; 17262d61bbb3SSatish Balay low = 0; /* assume unsorted */ 17272d61bbb3SSatish Balay while (high-low > 5) { 1728cd0e1443SSatish Balay t = (low+high)/2; 1729cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 1730cd0e1443SSatish Balay else low = t; 1731cd0e1443SSatish Balay } 1732cd0e1443SSatish Balay for (i=low; i<high; i++) { 1733cd0e1443SSatish Balay if (rp[i] > bcol) break; 1734cd0e1443SSatish Balay if (rp[i] == bcol) { 17352d61bbb3SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 17362d61bbb3SSatish Balay goto finished; 1737cd0e1443SSatish Balay } 1738cd0e1443SSatish Balay } 173997e567efSBarry Smith *v++ = 0.0; 17402d61bbb3SSatish Balay finished:; 1741cd0e1443SSatish Balay } 1742cd0e1443SSatish Balay } 17433a40ed3dSBarry Smith PetscFunctionReturn(0); 1744cd0e1443SSatish Balay } 1745cd0e1443SSatish Balay 174697e5c40aSBarry Smith #define CHUNKSIZE 10 17474a2ae208SSatish Balay #undef __FUNCT__ 17484a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ" 1749dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 175092c4ed94SBarry Smith { 175192c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1752e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 1753c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 17546849ba73SBarry Smith PetscErrorCode ierr; 1755d0f46423SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 1756273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 1757dd6ea824SBarry Smith const PetscScalar *value = v; 1758f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 175992c4ed94SBarry Smith 17603a40ed3dSBarry Smith PetscFunctionBegin; 17610e324ae4SSatish Balay if (roworiented) { 17620e324ae4SSatish Balay stepval = (n-1)*bs; 17630e324ae4SSatish Balay } else { 17640e324ae4SSatish Balay stepval = (m-1)*bs; 17650e324ae4SSatish Balay } 176692c4ed94SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 176792c4ed94SBarry Smith row = im[k]; 17685ef9f2a5SBarry Smith if (row < 0) continue; 17692515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 177077431f27SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 177192c4ed94SBarry Smith #endif 177292c4ed94SBarry Smith rp = aj + ai[row]; 177392c4ed94SBarry Smith ap = aa + bs2*ai[row]; 177492c4ed94SBarry Smith rmax = imax[row]; 177592c4ed94SBarry Smith nrow = ailen[row]; 177692c4ed94SBarry Smith low = 0; 1777c71e6ed7SBarry Smith high = nrow; 177892c4ed94SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 17795ef9f2a5SBarry Smith if (in[l] < 0) continue; 17802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 178177431f27SBarry Smith if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1); 178292c4ed94SBarry Smith #endif 178392c4ed94SBarry Smith col = in[l]; 178492c4ed94SBarry Smith if (roworiented) { 17850e324ae4SSatish Balay value = v + k*(stepval+bs)*bs + l*bs; 17860e324ae4SSatish Balay } else { 17870e324ae4SSatish Balay value = v + l*(stepval+bs)*bs + k*bs; 178892c4ed94SBarry Smith } 17897cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 1790e2ee6c50SBarry Smith lastcol = col; 179192c4ed94SBarry Smith while (high-low > 7) { 179292c4ed94SBarry Smith t = (low+high)/2; 179392c4ed94SBarry Smith if (rp[t] > col) high = t; 179492c4ed94SBarry Smith else low = t; 179592c4ed94SBarry Smith } 179692c4ed94SBarry Smith for (i=low; i<high; i++) { 179792c4ed94SBarry Smith if (rp[i] > col) break; 179892c4ed94SBarry Smith if (rp[i] == col) { 17998a84c255SSatish Balay bap = ap + bs2*i; 18000e324ae4SSatish Balay if (roworiented) { 18018a84c255SSatish Balay if (is == ADD_VALUES) { 1802dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1803dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18048a84c255SSatish Balay bap[jj] += *value++; 1805dd9472c6SBarry Smith } 1806dd9472c6SBarry Smith } 18070e324ae4SSatish Balay } else { 1808dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1809dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18100e324ae4SSatish Balay bap[jj] = *value++; 18118a84c255SSatish Balay } 1812dd9472c6SBarry Smith } 1813dd9472c6SBarry Smith } 18140e324ae4SSatish Balay } else { 18150e324ae4SSatish Balay if (is == ADD_VALUES) { 1816dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1817dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18180e324ae4SSatish Balay *bap++ += *value++; 1819dd9472c6SBarry Smith } 1820dd9472c6SBarry Smith } 18210e324ae4SSatish Balay } else { 1822dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1823dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18240e324ae4SSatish Balay *bap++ = *value++; 18250e324ae4SSatish Balay } 18268a84c255SSatish Balay } 1827dd9472c6SBarry Smith } 1828dd9472c6SBarry Smith } 1829f1241b54SBarry Smith goto noinsert2; 183092c4ed94SBarry Smith } 183192c4ed94SBarry Smith } 183289280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 1833085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1834421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 1835c03d1d03SSatish Balay N = nrow++ - 1; high++; 183692c4ed94SBarry Smith /* shift up all the later entries in this row */ 183792c4ed94SBarry Smith for (ii=N; ii>=i; ii--) { 183892c4ed94SBarry Smith rp[ii+1] = rp[ii]; 1839549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 184092c4ed94SBarry Smith } 1841549d3d68SSatish Balay if (N >= i) { 1842549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1843549d3d68SSatish Balay } 184492c4ed94SBarry Smith rp[i] = col; 18458a84c255SSatish Balay bap = ap + bs2*i; 18460e324ae4SSatish Balay if (roworiented) { 1847dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1848dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18490e324ae4SSatish Balay bap[jj] = *value++; 1850dd9472c6SBarry Smith } 1851dd9472c6SBarry Smith } 18520e324ae4SSatish Balay } else { 1853dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1854dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18550e324ae4SSatish Balay *bap++ = *value++; 18560e324ae4SSatish Balay } 1857dd9472c6SBarry Smith } 1858dd9472c6SBarry Smith } 1859f1241b54SBarry Smith noinsert2:; 186092c4ed94SBarry Smith low = i; 186192c4ed94SBarry Smith } 186292c4ed94SBarry Smith ailen[row] = nrow; 186392c4ed94SBarry Smith } 18643a40ed3dSBarry Smith PetscFunctionReturn(0); 186592c4ed94SBarry Smith } 186626e093fcSHong Zhang 18674a2ae208SSatish Balay #undef __FUNCT__ 18684a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ" 1869dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 1870584200bdSSatish Balay { 1871584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1872c1ac3661SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 1873d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 18746849ba73SBarry Smith PetscErrorCode ierr; 1875c1ac3661SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 18763f1db9ecSBarry Smith MatScalar *aa = a->a,*ap; 18773447b6efSHong Zhang PetscReal ratio=0.6; 1878584200bdSSatish Balay 18793a40ed3dSBarry Smith PetscFunctionBegin; 18803a40ed3dSBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1881584200bdSSatish Balay 188243ee02c3SBarry Smith if (m) rmax = ailen[0]; 1883584200bdSSatish Balay for (i=1; i<mbs; i++) { 1884584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 1885584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 1886d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 1887584200bdSSatish Balay if (fshift) { 1888a7c10996SSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 1889584200bdSSatish Balay N = ailen[i]; 1890584200bdSSatish Balay for (j=0; j<N; j++) { 1891584200bdSSatish Balay ip[j-fshift] = ip[j]; 1892549d3d68SSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1893584200bdSSatish Balay } 1894584200bdSSatish Balay } 1895584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 1896584200bdSSatish Balay } 1897584200bdSSatish Balay if (mbs) { 1898584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 1899584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 1900584200bdSSatish Balay } 1901584200bdSSatish Balay /* reset ilen and imax for each row */ 1902584200bdSSatish Balay for (i=0; i<mbs; i++) { 1903584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 1904584200bdSSatish Balay } 1905a7c10996SSatish Balay a->nz = ai[mbs]; 1906584200bdSSatish Balay 1907584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 1908b01c7715SBarry Smith a->idiagvalid = PETSC_FALSE; 1909584200bdSSatish Balay if (fshift && a->diag) { 1910606d414cSSatish Balay ierr = PetscFree(a->diag);CHKERRQ(ierr); 191152e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 1912584200bdSSatish Balay a->diag = 0; 1913584200bdSSatish Balay } 191428b2fa4aSMatthew Knepley if (fshift && a->nounused == -1) { 191528b2fa4aSMatthew Knepley SETERRQ4(PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 191628b2fa4aSMatthew Knepley } 1917d0f46423SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 1918ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 1919ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 1920e2f3b5e9SSatish Balay a->reallocs = 0; 19210e6d2581SBarry Smith A->info.nz_unneeded = (PetscReal)fshift*bs2; 1922cf4441caSHong Zhang 1923cb5d8e9eSHong Zhang /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */ 19242f53aa61SHong Zhang if (a->compressedrow.use){ 1925317fbc4cSHong Zhang ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr); 192673e7a558SHong Zhang } 192788e51ccdSHong Zhang 192888e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 19293a40ed3dSBarry Smith PetscFunctionReturn(0); 1930584200bdSSatish Balay } 1931584200bdSSatish Balay 1932bea157c4SSatish Balay /* 1933bea157c4SSatish Balay This function returns an array of flags which indicate the locations of contiguous 1934bea157c4SSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 1935bea157c4SSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 1936bea157c4SSatish Balay Assume: sizes should be long enough to hold all the values. 1937bea157c4SSatish Balay */ 19384a2ae208SSatish Balay #undef __FUNCT__ 19394a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks" 1940c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 1941d9b7c43dSSatish Balay { 1942c1ac3661SBarry Smith PetscInt i,j,k,row; 1943bea157c4SSatish Balay PetscTruth flg; 19443a40ed3dSBarry Smith 1945433994e6SBarry Smith PetscFunctionBegin; 1946bea157c4SSatish Balay for (i=0,j=0; i<n; j++) { 1947bea157c4SSatish Balay row = idx[i]; 1948bea157c4SSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 1949bea157c4SSatish Balay sizes[j] = 1; 1950bea157c4SSatish Balay i++; 1951e4fda26cSSatish Balay } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */ 1952bea157c4SSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 1953bea157c4SSatish Balay i++; 1954bea157c4SSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 1955bea157c4SSatish Balay flg = PETSC_TRUE; 1956bea157c4SSatish Balay for (k=1; k<bs; k++) { 1957bea157c4SSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 1958bea157c4SSatish Balay flg = PETSC_FALSE; 1959bea157c4SSatish Balay break; 1960d9b7c43dSSatish Balay } 1961bea157c4SSatish Balay } 1962abc0a331SBarry Smith if (flg) { /* No break in the bs */ 1963bea157c4SSatish Balay sizes[j] = bs; 1964bea157c4SSatish Balay i+= bs; 1965bea157c4SSatish Balay } else { 1966bea157c4SSatish Balay sizes[j] = 1; 1967bea157c4SSatish Balay i++; 1968bea157c4SSatish Balay } 1969bea157c4SSatish Balay } 1970bea157c4SSatish Balay } 1971bea157c4SSatish Balay *bs_max = j; 19723a40ed3dSBarry Smith PetscFunctionReturn(0); 1973d9b7c43dSSatish Balay } 1974d9b7c43dSSatish Balay 19754a2ae208SSatish Balay #undef __FUNCT__ 19764a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ" 1977f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag) 1978d9b7c43dSSatish Balay { 1979d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 1980dfbe8321SBarry Smith PetscErrorCode ierr; 1981f4df32b1SMatthew Knepley PetscInt i,j,k,count,*rows; 1982d0f46423SBarry Smith PetscInt bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max; 198387828ca2SBarry Smith PetscScalar zero = 0.0; 19843f1db9ecSBarry Smith MatScalar *aa; 1985d9b7c43dSSatish Balay 19863a40ed3dSBarry Smith PetscFunctionBegin; 1987d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 1988bea157c4SSatish Balay /* allocate memory for rows,sizes */ 1989c1ac3661SBarry Smith ierr = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr); 1990bea157c4SSatish Balay sizes = rows + is_n; 1991bea157c4SSatish Balay 1992563b5814SBarry Smith /* copy IS values to rows, and sort them */ 1993bea157c4SSatish Balay for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; } 1994bea157c4SSatish Balay ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr); 1995dffd3267SBarry Smith if (baij->keepzeroedrows) { 1996dffd3267SBarry Smith for (i=0; i<is_n; i++) { sizes[i] = 1; } 1997dffd3267SBarry Smith bs_max = is_n; 199888e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 1999dffd3267SBarry Smith } else { 2000bea157c4SSatish Balay ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr); 200188e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 2002dffd3267SBarry Smith } 2003bea157c4SSatish Balay 2004bea157c4SSatish Balay for (i=0,j=0; i<bs_max; j+=sizes[i],i++) { 2005bea157c4SSatish Balay row = rows[j]; 2006d0f46423SBarry Smith if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row); 2007bea157c4SSatish Balay count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 2008b31fbe3bSSatish Balay aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 2009dffd3267SBarry Smith if (sizes[i] == bs && !baij->keepzeroedrows) { 2010f4df32b1SMatthew Knepley if (diag != 0.0) { 2011bea157c4SSatish Balay if (baij->ilen[row/bs] > 0) { 2012bea157c4SSatish Balay baij->ilen[row/bs] = 1; 2013bea157c4SSatish Balay baij->j[baij->i[row/bs]] = row/bs; 2014bea157c4SSatish Balay ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr); 2015a07cd24cSSatish Balay } 2016563b5814SBarry Smith /* Now insert all the diagonal values for this bs */ 2017bea157c4SSatish Balay for (k=0; k<bs; k++) { 2018f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr); 2019bea157c4SSatish Balay } 2020f4df32b1SMatthew Knepley } else { /* (diag == 0.0) */ 2021bea157c4SSatish Balay baij->ilen[row/bs] = 0; 2022f4df32b1SMatthew Knepley } /* end (diag == 0.0) */ 2023bea157c4SSatish Balay } else { /* (sizes[i] != bs) */ 2024aa482453SBarry Smith #if defined (PETSC_USE_DEBUG) 2025634064b4SBarry Smith if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1"); 2026bea157c4SSatish Balay #endif 2027bea157c4SSatish Balay for (k=0; k<count; k++) { 2028d9b7c43dSSatish Balay aa[0] = zero; 2029d9b7c43dSSatish Balay aa += bs; 2030d9b7c43dSSatish Balay } 2031f4df32b1SMatthew Knepley if (diag != 0.0) { 2032f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr); 2033d9b7c43dSSatish Balay } 2034d9b7c43dSSatish Balay } 2035bea157c4SSatish Balay } 2036bea157c4SSatish Balay 2037606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 20389a8dea36SBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20393a40ed3dSBarry Smith PetscFunctionReturn(0); 2040d9b7c43dSSatish Balay } 20411c351548SSatish Balay 20424a2ae208SSatish Balay #undef __FUNCT__ 20434a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ" 2044c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 20452d61bbb3SSatish Balay { 20462d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2047e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 2048c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2049d0f46423SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 20506849ba73SBarry Smith PetscErrorCode ierr; 2051c1ac3661SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 2052273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 20533f1db9ecSBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 20542d61bbb3SSatish Balay 20552d61bbb3SSatish Balay PetscFunctionBegin; 20562d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 2057085a36d4SBarry Smith row = im[k]; 2058085a36d4SBarry Smith brow = row/bs; 20595ef9f2a5SBarry Smith if (row < 0) continue; 20602515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2061d0f46423SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 20622d61bbb3SSatish Balay #endif 20632d61bbb3SSatish Balay rp = aj + ai[brow]; 20642d61bbb3SSatish Balay ap = aa + bs2*ai[brow]; 20652d61bbb3SSatish Balay rmax = imax[brow]; 20662d61bbb3SSatish Balay nrow = ailen[brow]; 20672d61bbb3SSatish Balay low = 0; 2068c71e6ed7SBarry Smith high = nrow; 20692d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 20705ef9f2a5SBarry Smith if (in[l] < 0) continue; 20712515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2072d0f46423SBarry Smith if (in[l] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 20732d61bbb3SSatish Balay #endif 20742d61bbb3SSatish Balay col = in[l]; bcol = col/bs; 20752d61bbb3SSatish Balay ridx = row % bs; cidx = col % bs; 20762d61bbb3SSatish Balay if (roworiented) { 20775ef9f2a5SBarry Smith value = v[l + k*n]; 20782d61bbb3SSatish Balay } else { 20792d61bbb3SSatish Balay value = v[k + l*m]; 20802d61bbb3SSatish Balay } 20817cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 2082e2ee6c50SBarry Smith lastcol = col; 20832d61bbb3SSatish Balay while (high-low > 7) { 20842d61bbb3SSatish Balay t = (low+high)/2; 20852d61bbb3SSatish Balay if (rp[t] > bcol) high = t; 20862d61bbb3SSatish Balay else low = t; 20872d61bbb3SSatish Balay } 20882d61bbb3SSatish Balay for (i=low; i<high; i++) { 20892d61bbb3SSatish Balay if (rp[i] > bcol) break; 20902d61bbb3SSatish Balay if (rp[i] == bcol) { 20912d61bbb3SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 20922d61bbb3SSatish Balay if (is == ADD_VALUES) *bap += value; 20932d61bbb3SSatish Balay else *bap = value; 20942d61bbb3SSatish Balay goto noinsert1; 20952d61bbb3SSatish Balay } 20962d61bbb3SSatish Balay } 20972d61bbb3SSatish Balay if (nonew == 1) goto noinsert1; 2098085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 2099421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 2100c03d1d03SSatish Balay N = nrow++ - 1; high++; 21012d61bbb3SSatish Balay /* shift up all the later entries in this row */ 21022d61bbb3SSatish Balay for (ii=N; ii>=i; ii--) { 21032d61bbb3SSatish Balay rp[ii+1] = rp[ii]; 2104549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 21052d61bbb3SSatish Balay } 2106549d3d68SSatish Balay if (N>=i) { 2107549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 2108549d3d68SSatish Balay } 21092d61bbb3SSatish Balay rp[i] = bcol; 21102d61bbb3SSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 2111085a36d4SBarry Smith a->nz++; 21122d61bbb3SSatish Balay noinsert1:; 21132d61bbb3SSatish Balay low = i; 21142d61bbb3SSatish Balay } 21152d61bbb3SSatish Balay ailen[brow] = nrow; 21162d61bbb3SSatish Balay } 211788e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 21182d61bbb3SSatish Balay PetscFunctionReturn(0); 21192d61bbb3SSatish Balay } 21202d61bbb3SSatish Balay 2121db4efbfdSBarry Smith EXTERN PetscErrorCode MatSeqBAIJSetNumericFactorization(Mat,PetscTruth); 21222d61bbb3SSatish Balay 21234a2ae208SSatish Balay #undef __FUNCT__ 21244a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ" 21250481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info) 21262d61bbb3SSatish Balay { 21272d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inA->data; 21282d61bbb3SSatish Balay Mat outA; 2129dfbe8321SBarry Smith PetscErrorCode ierr; 2130667159a5SBarry Smith PetscTruth row_identity,col_identity; 21312d61bbb3SSatish Balay 21322d61bbb3SSatish Balay PetscFunctionBegin; 2133d3d32019SBarry Smith if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 2134667159a5SBarry Smith ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 2135667159a5SBarry Smith ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr); 2136667159a5SBarry Smith if (!row_identity || !col_identity) { 2137634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU"); 2138667159a5SBarry Smith } 21392d61bbb3SSatish Balay 21402d61bbb3SSatish Balay outA = inA; 21415c9eb25fSBarry Smith inA->factor = MAT_FACTOR_LU; 21422d61bbb3SSatish Balay 2143c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr); 2144cf242676SKris Buschelman 2145c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 2146c3122656SLisandro Dalcin if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); } 2147c3122656SLisandro Dalcin a->row = row; 2148c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 2149c3122656SLisandro Dalcin if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); } 2150c3122656SLisandro Dalcin a->col = col; 2151c38d4ed2SBarry Smith 2152c38d4ed2SBarry Smith /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 2153a23ff555SBarry Smith if (a->icol) { 2154a23ff555SBarry Smith ierr = ISDestroy(a->icol);CHKERRQ(ierr); 2155a23ff555SBarry Smith } 21564c49b128SBarry Smith ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr); 215752e6d16bSBarry Smith ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr); 2158c38d4ed2SBarry Smith 215958e7c4b3SSatish Balay ierr = MatSeqBAIJSetNumericFactorization(inA,(PetscTruth)(row_identity && col_identity));CHKERRQ(ierr); 2160c38d4ed2SBarry Smith if (!a->solve_work) { 2161d0f46423SBarry Smith ierr = PetscMalloc((inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr); 2162d0f46423SBarry Smith ierr = PetscLogObjectMemory(inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 2163c38d4ed2SBarry Smith } 2164719d5645SBarry Smith ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr); 2165667159a5SBarry Smith 21662d61bbb3SSatish Balay PetscFunctionReturn(0); 21672d61bbb3SSatish Balay } 2168d9b7c43dSSatish Balay 2169fb2e594dSBarry Smith EXTERN_C_BEGIN 21704a2ae208SSatish Balay #undef __FUNCT__ 21714a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ" 2172be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices) 217327a8da17SBarry Smith { 217427a8da17SBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data; 2175c1ac3661SBarry Smith PetscInt i,nz,nbs; 217627a8da17SBarry Smith 217727a8da17SBarry Smith PetscFunctionBegin; 217814db4f74SSatish Balay nz = baij->maxnz/baij->bs2; 217914db4f74SSatish Balay nbs = baij->nbs; 218027a8da17SBarry Smith for (i=0; i<nz; i++) { 218127a8da17SBarry Smith baij->j[i] = indices[i]; 218227a8da17SBarry Smith } 218327a8da17SBarry Smith baij->nz = nz; 218414db4f74SSatish Balay for (i=0; i<nbs; i++) { 218527a8da17SBarry Smith baij->ilen[i] = baij->imax[i]; 218627a8da17SBarry Smith } 218727a8da17SBarry Smith 218827a8da17SBarry Smith PetscFunctionReturn(0); 218927a8da17SBarry Smith } 2190fb2e594dSBarry Smith EXTERN_C_END 219127a8da17SBarry Smith 21924a2ae208SSatish Balay #undef __FUNCT__ 21934a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices" 219427a8da17SBarry Smith /*@ 219527a8da17SBarry Smith MatSeqBAIJSetColumnIndices - Set the column indices for all the rows 219627a8da17SBarry Smith in the matrix. 219727a8da17SBarry Smith 219827a8da17SBarry Smith Input Parameters: 219927a8da17SBarry Smith + mat - the SeqBAIJ matrix 220027a8da17SBarry Smith - indices - the column indices 220127a8da17SBarry Smith 220215091d37SBarry Smith Level: advanced 220315091d37SBarry Smith 220427a8da17SBarry Smith Notes: 220527a8da17SBarry Smith This can be called if you have precomputed the nonzero structure of the 220627a8da17SBarry Smith matrix and want to provide it to the matrix object to improve the performance 220727a8da17SBarry Smith of the MatSetValues() operation. 220827a8da17SBarry Smith 220927a8da17SBarry Smith You MUST have set the correct numbers of nonzeros per row in the call to 2210d1be2dadSMatthew Knepley MatCreateSeqBAIJ(), and the columns indices MUST be sorted. 221127a8da17SBarry Smith 221227a8da17SBarry Smith MUST be called before any calls to MatSetValues(); 221327a8da17SBarry Smith 221427a8da17SBarry Smith @*/ 2215be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices) 221627a8da17SBarry Smith { 2217c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt *); 221827a8da17SBarry Smith 221927a8da17SBarry Smith PetscFunctionBegin; 22204482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 22214482741eSBarry Smith PetscValidPointer(indices,2); 2222c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr); 222327a8da17SBarry Smith if (f) { 222427a8da17SBarry Smith ierr = (*f)(mat,indices);CHKERRQ(ierr); 222527a8da17SBarry Smith } else { 2226634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices"); 222727a8da17SBarry Smith } 222827a8da17SBarry Smith PetscFunctionReturn(0); 222927a8da17SBarry Smith } 223027a8da17SBarry Smith 22314a2ae208SSatish Balay #undef __FUNCT__ 2232985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ" 2233985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[]) 2234273d9f13SBarry Smith { 2235273d9f13SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2236dfbe8321SBarry Smith PetscErrorCode ierr; 2237c1ac3661SBarry Smith PetscInt i,j,n,row,bs,*ai,*aj,mbs; 2238273d9f13SBarry Smith PetscReal atmp; 223987828ca2SBarry Smith PetscScalar *x,zero = 0.0; 2240273d9f13SBarry Smith MatScalar *aa; 2241c1ac3661SBarry Smith PetscInt ncols,brow,krow,kcol; 2242273d9f13SBarry Smith 2243273d9f13SBarry Smith PetscFunctionBegin; 2244273d9f13SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2245d0f46423SBarry Smith bs = A->rmap->bs; 2246273d9f13SBarry Smith aa = a->a; 2247273d9f13SBarry Smith ai = a->i; 2248273d9f13SBarry Smith aj = a->j; 2249273d9f13SBarry Smith mbs = a->mbs; 2250273d9f13SBarry Smith 22512dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 22521ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2253273d9f13SBarry Smith ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 2254d0f46423SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2255273d9f13SBarry Smith for (i=0; i<mbs; i++) { 2256273d9f13SBarry Smith ncols = ai[1] - ai[0]; ai++; 2257273d9f13SBarry Smith brow = bs*i; 2258273d9f13SBarry Smith for (j=0; j<ncols; j++){ 2259273d9f13SBarry Smith for (kcol=0; kcol<bs; kcol++){ 2260273d9f13SBarry Smith for (krow=0; krow<bs; krow++){ 2261273d9f13SBarry Smith atmp = PetscAbsScalar(*aa);aa++; 2262273d9f13SBarry Smith row = brow + krow; /* row index */ 2263a83599f4SBarry Smith /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */ 2264985db425SBarry Smith if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;} 2265273d9f13SBarry Smith } 2266273d9f13SBarry Smith } 2267273d9f13SBarry Smith aj++; 2268273d9f13SBarry Smith } 2269273d9f13SBarry Smith } 22701ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2271273d9f13SBarry Smith PetscFunctionReturn(0); 2272273d9f13SBarry Smith } 2273273d9f13SBarry Smith 22744a2ae208SSatish Balay #undef __FUNCT__ 22753c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ" 22763c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str) 22773c896bc6SHong Zhang { 22783c896bc6SHong Zhang PetscErrorCode ierr; 22793c896bc6SHong Zhang 22803c896bc6SHong Zhang PetscFunctionBegin; 22813c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 22823c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 22833c896bc6SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 22843c896bc6SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data; 22853c896bc6SHong Zhang 2286d0f46423SBarry Smith if (a->i[A->rmap->N] != b->i[B->rmap->N]) { 22873c896bc6SHong Zhang SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 22883c896bc6SHong Zhang } 2289d0f46423SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr); 22903c896bc6SHong Zhang } else { 22913c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 22923c896bc6SHong Zhang } 22933c896bc6SHong Zhang PetscFunctionReturn(0); 22943c896bc6SHong Zhang } 22953c896bc6SHong Zhang 22963c896bc6SHong Zhang #undef __FUNCT__ 22974a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ" 2298dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A) 2299273d9f13SBarry Smith { 2300dfbe8321SBarry Smith PetscErrorCode ierr; 2301273d9f13SBarry Smith 2302273d9f13SBarry Smith PetscFunctionBegin; 2303db4efbfdSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr); 2304273d9f13SBarry Smith PetscFunctionReturn(0); 2305273d9f13SBarry Smith } 2306273d9f13SBarry Smith 23074a2ae208SSatish Balay #undef __FUNCT__ 23084a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ" 2309dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2310f2a5309cSSatish Balay { 2311f2a5309cSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2312f2a5309cSSatish Balay PetscFunctionBegin; 2313f2a5309cSSatish Balay *array = a->a; 2314f2a5309cSSatish Balay PetscFunctionReturn(0); 2315f2a5309cSSatish Balay } 2316f2a5309cSSatish Balay 23174a2ae208SSatish Balay #undef __FUNCT__ 23184a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ" 2319dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2320f2a5309cSSatish Balay { 2321f2a5309cSSatish Balay PetscFunctionBegin; 2322f2a5309cSSatish Balay PetscFunctionReturn(0); 2323f2a5309cSSatish Balay } 2324f2a5309cSSatish Balay 232542ee4b1aSHong Zhang #include "petscblaslapack.h" 232642ee4b1aSHong Zhang #undef __FUNCT__ 232742ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ" 2328f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 232942ee4b1aSHong Zhang { 233042ee4b1aSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data; 2331dfbe8321SBarry Smith PetscErrorCode ierr; 2332d0f46423SBarry Smith PetscInt i,bs=Y->rmap->bs,j,bs2; 23330805154bSBarry Smith PetscBLASInt one=1,bnz = PetscBLASIntCast(x->nz); 233442ee4b1aSHong Zhang 233542ee4b1aSHong Zhang PetscFunctionBegin; 233642ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 2337f4df32b1SMatthew Knepley PetscScalar alpha = a; 2338f4df32b1SMatthew Knepley BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 2339c537a176SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2340c4319e64SHong Zhang if (y->xtoy && y->XtoY != X) { 2341c4319e64SHong Zhang ierr = PetscFree(y->xtoy);CHKERRQ(ierr); 2342c4319e64SHong Zhang ierr = MatDestroy(y->XtoY);CHKERRQ(ierr); 2343c537a176SHong Zhang } 2344c4319e64SHong Zhang if (!y->xtoy) { /* get xtoy */ 2345c4319e64SHong Zhang ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr); 2346c4319e64SHong Zhang y->XtoY = X; 2347c009d632SSatish Balay ierr = PetscObjectReference((PetscObject)X);CHKERRQ(ierr); 2348c537a176SHong Zhang } 2349c4319e64SHong Zhang bs2 = bs*bs; 2350c537a176SHong Zhang for (i=0; i<x->nz; i++) { 2351c4319e64SHong Zhang j = 0; 2352c4319e64SHong Zhang while (j < bs2){ 2353f4df32b1SMatthew Knepley y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]); 2354c4319e64SHong Zhang j++; 2355c537a176SHong Zhang } 2356c4319e64SHong Zhang } 23571e2582c4SBarry Smith ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr); 235842ee4b1aSHong Zhang } else { 2359f4df32b1SMatthew Knepley ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 236042ee4b1aSHong Zhang } 236142ee4b1aSHong Zhang PetscFunctionReturn(0); 236242ee4b1aSHong Zhang } 236342ee4b1aSHong Zhang 236499cafbc1SBarry Smith #undef __FUNCT__ 236599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ" 236699cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 236799cafbc1SBarry Smith { 236899cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 236999cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2370dd6ea824SBarry Smith MatScalar *aa = a->a; 237199cafbc1SBarry Smith 237299cafbc1SBarry Smith PetscFunctionBegin; 237399cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 237499cafbc1SBarry Smith PetscFunctionReturn(0); 237599cafbc1SBarry Smith } 237699cafbc1SBarry Smith 237799cafbc1SBarry Smith #undef __FUNCT__ 237899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ" 237999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 238099cafbc1SBarry Smith { 238199cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 238299cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2383dd6ea824SBarry Smith MatScalar *aa = a->a; 238499cafbc1SBarry Smith 238599cafbc1SBarry Smith PetscFunctionBegin; 238699cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 238799cafbc1SBarry Smith PetscFunctionReturn(0); 238899cafbc1SBarry Smith } 238999cafbc1SBarry Smith 239099cafbc1SBarry Smith 23912593348eSBarry Smith /* -------------------------------------------------------------------*/ 2392cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 2393cc2dc46cSBarry Smith MatGetRow_SeqBAIJ, 2394cc2dc46cSBarry Smith MatRestoreRow_SeqBAIJ, 2395cc2dc46cSBarry Smith MatMult_SeqBAIJ_N, 239697304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N, 23977c922b88SBarry Smith MatMultTranspose_SeqBAIJ, 23987c922b88SBarry Smith MatMultTransposeAdd_SeqBAIJ, 2399db4efbfdSBarry Smith 0, 2400cc2dc46cSBarry Smith 0, 2401cc2dc46cSBarry Smith 0, 240297304618SKris Buschelman /*10*/ 0, 2403cc2dc46cSBarry Smith MatLUFactor_SeqBAIJ, 2404cc2dc46cSBarry Smith 0, 2405b6490206SBarry Smith 0, 2406f2501298SSatish Balay MatTranspose_SeqBAIJ, 240797304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ, 2408cc2dc46cSBarry Smith MatEqual_SeqBAIJ, 2409cc2dc46cSBarry Smith MatGetDiagonal_SeqBAIJ, 2410cc2dc46cSBarry Smith MatDiagonalScale_SeqBAIJ, 2411cc2dc46cSBarry Smith MatNorm_SeqBAIJ, 241297304618SKris Buschelman /*20*/ 0, 2413cc2dc46cSBarry Smith MatAssemblyEnd_SeqBAIJ, 2414cc2dc46cSBarry Smith 0, 2415cc2dc46cSBarry Smith MatSetOption_SeqBAIJ, 2416cc2dc46cSBarry Smith MatZeroEntries_SeqBAIJ, 241797304618SKris Buschelman /*25*/ MatZeroRows_SeqBAIJ, 2418db4efbfdSBarry Smith 0, 2419db4efbfdSBarry Smith 0, 2420db4efbfdSBarry Smith 0, 2421db4efbfdSBarry Smith 0, 242297304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqBAIJ, 2423db4efbfdSBarry Smith 0, 2424db4efbfdSBarry Smith 0, 2425f2a5309cSSatish Balay MatGetArray_SeqBAIJ, 2426f2a5309cSSatish Balay MatRestoreArray_SeqBAIJ, 242797304618SKris Buschelman /*35*/ MatDuplicate_SeqBAIJ, 2428cc2dc46cSBarry Smith 0, 2429cc2dc46cSBarry Smith 0, 2430cc2dc46cSBarry Smith MatILUFactor_SeqBAIJ, 2431cc2dc46cSBarry Smith 0, 243297304618SKris Buschelman /*40*/ MatAXPY_SeqBAIJ, 2433cc2dc46cSBarry Smith MatGetSubMatrices_SeqBAIJ, 2434cc2dc46cSBarry Smith MatIncreaseOverlap_SeqBAIJ, 2435cc2dc46cSBarry Smith MatGetValues_SeqBAIJ, 24363c896bc6SHong Zhang MatCopy_SeqBAIJ, 24378c07d4e3SBarry Smith /*45*/ 0, 2438cc2dc46cSBarry Smith MatScale_SeqBAIJ, 2439cc2dc46cSBarry Smith 0, 2440cc2dc46cSBarry Smith 0, 2441cc2dc46cSBarry Smith 0, 2442521d7252SBarry Smith /*50*/ 0, 24433b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 244492c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 2445cc2dc46cSBarry Smith 0, 2446cc2dc46cSBarry Smith 0, 244797304618SKris Buschelman /*55*/ 0, 2448cc2dc46cSBarry Smith 0, 2449cc2dc46cSBarry Smith 0, 2450cc2dc46cSBarry Smith 0, 2451d3825aa8SBarry Smith MatSetValuesBlocked_SeqBAIJ, 245297304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqBAIJ, 2453b9b97703SBarry Smith MatDestroy_SeqBAIJ, 2454b9b97703SBarry Smith MatView_SeqBAIJ, 2455357abbc8SBarry Smith 0, 2456273d9f13SBarry Smith 0, 245797304618SKris Buschelman /*65*/ 0, 2458273d9f13SBarry Smith 0, 2459273d9f13SBarry Smith 0, 2460273d9f13SBarry Smith 0, 2461273d9f13SBarry Smith 0, 2462985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqBAIJ, 2463273d9f13SBarry Smith 0, 2464c87e5d42SMatthew Knepley MatConvert_Basic, 246597304618SKris Buschelman 0, 246697304618SKris Buschelman 0, 246797304618SKris Buschelman /*75*/ 0, 246897304618SKris Buschelman 0, 246997304618SKris Buschelman 0, 247097304618SKris Buschelman 0, 247197304618SKris Buschelman 0, 247297304618SKris Buschelman /*80*/ 0, 247397304618SKris Buschelman 0, 247497304618SKris Buschelman 0, 247597304618SKris Buschelman 0, 2476865e5f61SKris Buschelman MatLoad_SeqBAIJ, 2477865e5f61SKris Buschelman /*85*/ 0, 2478b01c7715SBarry Smith 0, 2479b01c7715SBarry Smith 0, 2480b01c7715SBarry Smith 0, 2481865e5f61SKris Buschelman 0, 2482865e5f61SKris Buschelman /*90*/ 0, 2483865e5f61SKris Buschelman 0, 2484865e5f61SKris Buschelman 0, 2485865e5f61SKris Buschelman 0, 2486865e5f61SKris Buschelman 0, 2487865e5f61SKris Buschelman /*95*/ 0, 2488865e5f61SKris Buschelman 0, 2489865e5f61SKris Buschelman 0, 249099cafbc1SBarry Smith 0, 249199cafbc1SBarry Smith 0, 249299cafbc1SBarry Smith /*100*/0, 249399cafbc1SBarry Smith 0, 249499cafbc1SBarry Smith 0, 249599cafbc1SBarry Smith 0, 249699cafbc1SBarry Smith 0, 249799cafbc1SBarry Smith /*105*/0, 249899cafbc1SBarry Smith MatRealPart_SeqBAIJ, 24992af78befSBarry Smith MatImaginaryPart_SeqBAIJ, 25002af78befSBarry Smith 0, 25012af78befSBarry Smith 0, 25022af78befSBarry Smith /*110*/0, 25032af78befSBarry Smith 0, 25042af78befSBarry Smith 0, 25052af78befSBarry Smith 0, 25062af78befSBarry Smith MatMissingDiagonal_SeqBAIJ 25072af78befSBarry Smith /*115*/ 250899cafbc1SBarry Smith }; 25092593348eSBarry Smith 25103e90b805SBarry Smith EXTERN_C_BEGIN 25114a2ae208SSatish Balay #undef __FUNCT__ 25124a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ" 2513be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat) 25143e90b805SBarry Smith { 25153e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 2516d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 2517dfbe8321SBarry Smith PetscErrorCode ierr; 25183e90b805SBarry Smith 25193e90b805SBarry Smith PetscFunctionBegin; 25203e90b805SBarry Smith if (aij->nonew != 1) { 2521512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25223e90b805SBarry Smith } 25233e90b805SBarry Smith 25243e90b805SBarry Smith /* allocate space for values if not already there */ 25253e90b805SBarry Smith if (!aij->saved_values) { 252687828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr); 25273e90b805SBarry Smith } 25283e90b805SBarry Smith 25293e90b805SBarry Smith /* copy values over */ 253087828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25313e90b805SBarry Smith PetscFunctionReturn(0); 25323e90b805SBarry Smith } 25333e90b805SBarry Smith EXTERN_C_END 25343e90b805SBarry Smith 25353e90b805SBarry Smith EXTERN_C_BEGIN 25364a2ae208SSatish Balay #undef __FUNCT__ 25374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ" 2538be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat) 25393e90b805SBarry Smith { 25403e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 25416849ba73SBarry Smith PetscErrorCode ierr; 2542d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 25433e90b805SBarry Smith 25443e90b805SBarry Smith PetscFunctionBegin; 25453e90b805SBarry Smith if (aij->nonew != 1) { 2546512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25473e90b805SBarry Smith } 25483e90b805SBarry Smith if (!aij->saved_values) { 2549634064b4SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 25503e90b805SBarry Smith } 25513e90b805SBarry Smith 25523e90b805SBarry Smith /* copy values over */ 255387828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25543e90b805SBarry Smith PetscFunctionReturn(0); 25553e90b805SBarry Smith } 25563e90b805SBarry Smith EXTERN_C_END 25573e90b805SBarry Smith 2558273d9f13SBarry Smith EXTERN_C_BEGIN 2559f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 2560f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*); 2561273d9f13SBarry Smith EXTERN_C_END 2562273d9f13SBarry Smith 2563273d9f13SBarry Smith EXTERN_C_BEGIN 25644a2ae208SSatish Balay #undef __FUNCT__ 2565a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ" 2566be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 2567a23d5eceSKris Buschelman { 2568a23d5eceSKris Buschelman Mat_SeqBAIJ *b; 25696849ba73SBarry Smith PetscErrorCode ierr; 2570db4efbfdSBarry Smith PetscInt i,mbs,nbs,bs2,newbs = PetscAbs(bs); 2571ab93d7beSBarry Smith PetscTruth flg,skipallocation = PETSC_FALSE; 2572a23d5eceSKris Buschelman 2573a23d5eceSKris Buschelman PetscFunctionBegin; 2574a23d5eceSKris Buschelman 2575ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 2576ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 2577ab93d7beSBarry Smith nz = 0; 2578ab93d7beSBarry Smith } 25798c07d4e3SBarry Smith 2580db4efbfdSBarry Smith if (bs < 0) { 25817adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr); 2582db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 25838c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2584db4efbfdSBarry Smith bs = PetscAbs(bs); 2585db4efbfdSBarry Smith } 2586a23d5eceSKris Buschelman if (nnz && newbs != bs) { 2587634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz"); 2588a23d5eceSKris Buschelman } 2589a23d5eceSKris Buschelman bs = newbs; 2590a23d5eceSKris Buschelman 25917408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 25927408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2593d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2594d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2595899cda47SBarry Smith 2596899cda47SBarry Smith B->preallocated = PETSC_TRUE; 2597899cda47SBarry Smith 2598d0f46423SBarry Smith mbs = B->rmap->n/bs; 2599d0f46423SBarry Smith nbs = B->cmap->n/bs; 2600a23d5eceSKris Buschelman bs2 = bs*bs; 2601a23d5eceSKris Buschelman 2602d0f46423SBarry Smith if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) { 2603d0f46423SBarry Smith SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs); 2604a23d5eceSKris Buschelman } 2605a23d5eceSKris Buschelman 2606a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 260777431f27SBarry Smith if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 2608a23d5eceSKris Buschelman if (nnz) { 2609a23d5eceSKris Buschelman for (i=0; i<mbs; i++) { 261077431f27SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 261177431f27SBarry Smith if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs); 2612a23d5eceSKris Buschelman } 2613a23d5eceSKris Buschelman } 2614a23d5eceSKris Buschelman 2615a23d5eceSKris Buschelman b = (Mat_SeqBAIJ*)B->data; 26167adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr); 26178c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 26188c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 26198c07d4e3SBarry Smith 2620a23d5eceSKris Buschelman if (!flg) { 2621a23d5eceSKris Buschelman switch (bs) { 2622a23d5eceSKris Buschelman case 1: 2623a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_1; 2624a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_1; 26256d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_1; 2626a23d5eceSKris Buschelman break; 2627a23d5eceSKris Buschelman case 2: 2628a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_2; 2629a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_2; 2630b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_2; 2631a23d5eceSKris Buschelman break; 2632a23d5eceSKris Buschelman case 3: 2633a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_3; 2634a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_3; 2635b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_3; 2636a23d5eceSKris Buschelman break; 2637a23d5eceSKris Buschelman case 4: 2638a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_4; 2639a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_4; 2640b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_4; 2641a23d5eceSKris Buschelman break; 2642a23d5eceSKris Buschelman case 5: 2643a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_5; 2644a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_5; 2645b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_5; 2646a23d5eceSKris Buschelman break; 2647a23d5eceSKris Buschelman case 6: 2648a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_6; 2649a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_6; 26506d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_6; 2651a23d5eceSKris Buschelman break; 2652a23d5eceSKris Buschelman case 7: 2653a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_7; 2654a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_7; 26556d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_7; 2656a23d5eceSKris Buschelman break; 2657a23d5eceSKris Buschelman default: 2658a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_N; 2659a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_N; 2660a23d5eceSKris Buschelman break; 2661a23d5eceSKris Buschelman } 2662a23d5eceSKris Buschelman } 2663d0f46423SBarry Smith B->rmap->bs = bs; 2664a23d5eceSKris Buschelman b->mbs = mbs; 2665a23d5eceSKris Buschelman b->nbs = nbs; 2666ab93d7beSBarry Smith if (!skipallocation) { 26672ee49352SLisandro Dalcin if (!b->imax) { 2668ab93d7beSBarry Smith ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr); 26692ee49352SLisandro Dalcin } 2670ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 2671ab93d7beSBarry Smith for (i=0; i<mbs; i++) { b->ilen[i] = 0;} 2672a23d5eceSKris Buschelman if (!nnz) { 2673a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2674a23d5eceSKris Buschelman else if (nz <= 0) nz = 1; 2675a23d5eceSKris Buschelman for (i=0; i<mbs; i++) b->imax[i] = nz; 2676a23d5eceSKris Buschelman nz = nz*mbs; 2677a23d5eceSKris Buschelman } else { 2678a23d5eceSKris Buschelman nz = 0; 2679a23d5eceSKris Buschelman for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 2680a23d5eceSKris Buschelman } 2681a23d5eceSKris Buschelman 2682a23d5eceSKris Buschelman /* allocate the matrix space */ 26832ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 2684d0f46423SBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap->N+1,PetscInt,&b->i);CHKERRQ(ierr); 2685d0f46423SBarry Smith ierr = PetscLogObjectMemory(B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2686a23d5eceSKris Buschelman ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 2687c1ac3661SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 2688a23d5eceSKris Buschelman b->singlemalloc = PETSC_TRUE; 2689a23d5eceSKris Buschelman b->i[0] = 0; 2690a23d5eceSKris Buschelman for (i=1; i<mbs+1; i++) { 2691a23d5eceSKris Buschelman b->i[i] = b->i[i-1] + b->imax[i-1]; 2692a23d5eceSKris Buschelman } 2693e6b907acSBarry Smith b->free_a = PETSC_TRUE; 2694e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 2695e811da20SHong Zhang } else { 2696e6b907acSBarry Smith b->free_a = PETSC_FALSE; 2697e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 2698ab93d7beSBarry Smith } 2699a23d5eceSKris Buschelman 2700d0f46423SBarry Smith B->rmap->bs = bs; 2701a23d5eceSKris Buschelman b->bs2 = bs2; 2702a23d5eceSKris Buschelman b->mbs = mbs; 2703a23d5eceSKris Buschelman b->nz = 0; 2704a23d5eceSKris Buschelman b->maxnz = nz*bs2; 2705a23d5eceSKris Buschelman B->info.nz_unneeded = (PetscReal)b->maxnz; 2706a23d5eceSKris Buschelman PetscFunctionReturn(0); 2707a23d5eceSKris Buschelman } 2708a23d5eceSKris Buschelman EXTERN_C_END 2709a23d5eceSKris Buschelman 2710b24902e0SBarry Smith EXTERN_C_BEGIN 2711725b52f3SLisandro Dalcin #undef __FUNCT__ 2712725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ" 2713cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2714725b52f3SLisandro Dalcin { 2715725b52f3SLisandro Dalcin PetscInt i,m,nz,nz_max=0,*nnz; 2716725b52f3SLisandro Dalcin PetscScalar *values=0; 2717725b52f3SLisandro Dalcin PetscErrorCode ierr; 2718725b52f3SLisandro Dalcin 2719725b52f3SLisandro Dalcin PetscFunctionBegin; 2720725b52f3SLisandro Dalcin 2721725b52f3SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 27227408324eSLisandro Dalcin 27237408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 27247408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2725d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2726d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2727d0f46423SBarry Smith m = B->rmap->n/bs; 2728725b52f3SLisandro Dalcin 2729cf12db73SBarry Smith if (ii[0] != 0) { SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); } 2730725b52f3SLisandro Dalcin ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr); 2731725b52f3SLisandro Dalcin for(i=0; i<m; i++) { 2732cf12db73SBarry Smith nz = ii[i+1]- ii[i]; 2733725b52f3SLisandro Dalcin if (nz < 0) { SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); } 2734725b52f3SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 2735725b52f3SLisandro Dalcin nnz[i] = nz; 2736725b52f3SLisandro Dalcin } 2737725b52f3SLisandro Dalcin ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 2738725b52f3SLisandro Dalcin ierr = PetscFree(nnz);CHKERRQ(ierr); 2739725b52f3SLisandro Dalcin 2740725b52f3SLisandro Dalcin values = (PetscScalar*)V; 2741725b52f3SLisandro Dalcin if (!values) { 2742725b52f3SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2743725b52f3SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2744725b52f3SLisandro Dalcin } 2745725b52f3SLisandro Dalcin for (i=0; i<m; i++) { 2746cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2747cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2748cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2749725b52f3SLisandro Dalcin ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2750725b52f3SLisandro Dalcin } 2751725b52f3SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2752725b52f3SLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2753725b52f3SLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2754725b52f3SLisandro Dalcin 2755725b52f3SLisandro Dalcin PetscFunctionReturn(0); 2756725b52f3SLisandro Dalcin } 2757725b52f3SLisandro Dalcin EXTERN_C_END 2758725b52f3SLisandro Dalcin 2759725b52f3SLisandro Dalcin 2760207126cbSBarry Smith EXTERN_C_BEGIN 2761b24902e0SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*); 2762db4efbfdSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable_seqbaij_petsc(Mat,MatFactorType,Mat*); 2763b24902e0SBarry Smith EXTERN_C_END 2764b24902e0SBarry Smith 27650bad9183SKris Buschelman /*MC 2766fafad747SKris Buschelman MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 27670bad9183SKris Buschelman block sparse compressed row format. 27680bad9183SKris Buschelman 27690bad9183SKris Buschelman Options Database Keys: 27700bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions() 27710bad9183SKris Buschelman 27720bad9183SKris Buschelman Level: beginner 27730bad9183SKris Buschelman 2774f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ() 27750bad9183SKris Buschelman M*/ 27760bad9183SKris Buschelman 2777b24902e0SBarry Smith 2778a23d5eceSKris Buschelman EXTERN_C_BEGIN 2779a23d5eceSKris Buschelman #undef __FUNCT__ 27804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ" 2781be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B) 27822593348eSBarry Smith { 2783dfbe8321SBarry Smith PetscErrorCode ierr; 2784c1ac3661SBarry Smith PetscMPIInt size; 2785b6490206SBarry Smith Mat_SeqBAIJ *b; 27863b2fbd54SBarry Smith 27873a40ed3dSBarry Smith PetscFunctionBegin; 27887adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 278929bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 2790b6490206SBarry Smith 279138f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr); 2792b0a32e0cSBarry Smith B->data = (void*)b; 2793549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 279490f02eecSBarry Smith B->mapping = 0; 27952593348eSBarry Smith b->row = 0; 27962593348eSBarry Smith b->col = 0; 2797e51c0b9cSSatish Balay b->icol = 0; 27982593348eSBarry Smith b->reallocs = 0; 27993e90b805SBarry Smith b->saved_values = 0; 28002593348eSBarry Smith 2801c4992f7dSBarry Smith b->roworiented = PETSC_TRUE; 28022593348eSBarry Smith b->nonew = 0; 28032593348eSBarry Smith b->diag = 0; 28042593348eSBarry Smith b->solve_work = 0; 2805de6a44a3SBarry Smith b->mult_work = 0; 28062a1b7f2aSHong Zhang B->spptr = 0; 28070e6d2581SBarry Smith B->info.nz_unneeded = (PetscReal)b->maxnz; 2808883fce79SBarry Smith b->keepzeroedrows = PETSC_FALSE; 2809c4319e64SHong Zhang b->xtoy = 0; 2810c4319e64SHong Zhang b->XtoY = 0; 281173e7a558SHong Zhang b->compressedrow.use = PETSC_FALSE; 281226e093fcSHong Zhang b->compressedrow.nrows = 0; 281373e7a558SHong Zhang b->compressedrow.i = PETSC_NULL; 281473e7a558SHong Zhang b->compressedrow.rindex = PETSC_NULL; 281573e7a558SHong Zhang b->compressedrow.checked = PETSC_FALSE; 281688e51ccdSHong Zhang B->same_nonzero = PETSC_FALSE; 28174e220ebcSLois Curfman McInnes 2818db4efbfdSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactorAvailable_seqbaij_petsc_C", 2819db4efbfdSBarry Smith "MatGetFactorAvailable_seqbaij_petsc", 2820db4efbfdSBarry Smith MatGetFactorAvailable_seqbaij_petsc);CHKERRQ(ierr); 2821b24902e0SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C", 2822b24902e0SBarry Smith "MatGetFactor_seqbaij_petsc", 2823b24902e0SBarry Smith MatGetFactor_seqbaij_petsc);CHKERRQ(ierr); 282443516a2dSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C", 282543516a2dSKris Buschelman "MatInvertBlockDiagonal_SeqBAIJ", 282643516a2dSKris Buschelman MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr); 2827f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 28283e90b805SBarry Smith "MatStoreValues_SeqBAIJ", 2829bc4b532fSSatish Balay MatStoreValues_SeqBAIJ);CHKERRQ(ierr); 2830f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 28313e90b805SBarry Smith "MatRetrieveValues_SeqBAIJ", 2832bc4b532fSSatish Balay MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr); 2833f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C", 283427a8da17SBarry Smith "MatSeqBAIJSetColumnIndices_SeqBAIJ", 2835bc4b532fSSatish Balay MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr); 2836a6175056SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C", 2837273d9f13SBarry Smith "MatConvert_SeqBAIJ_SeqAIJ", 2838273d9f13SBarry Smith MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr); 2839a0e1a404SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C", 2840a0e1a404SHong Zhang "MatConvert_SeqBAIJ_SeqSBAIJ", 2841a0e1a404SHong Zhang MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr); 2842a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C", 2843a23d5eceSKris Buschelman "MatSeqBAIJSetPreallocation_SeqBAIJ", 2844a23d5eceSKris Buschelman MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr); 2845725b52f3SLisandro Dalcin ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C", 2846725b52f3SLisandro Dalcin "MatSeqBAIJSetPreallocationCSR_SeqBAIJ", 2847725b52f3SLisandro Dalcin MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr); 284817667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr); 28493a40ed3dSBarry Smith PetscFunctionReturn(0); 28502593348eSBarry Smith } 2851273d9f13SBarry Smith EXTERN_C_END 28522593348eSBarry Smith 28534a2ae208SSatish Balay #undef __FUNCT__ 2854b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ" 2855719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues) 28562593348eSBarry Smith { 2857b24902e0SBarry Smith Mat_SeqBAIJ *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data; 28586849ba73SBarry Smith PetscErrorCode ierr; 2859a96a251dSBarry Smith PetscInt i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2; 2860de6a44a3SBarry Smith 28613a40ed3dSBarry Smith PetscFunctionBegin; 286229bbc08cSBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix"); 28632593348eSBarry Smith 286433b91e9fSSatish Balay ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr); 2865b6490206SBarry Smith for (i=0; i<mbs; i++) { 28662593348eSBarry Smith c->imax[i] = a->imax[i]; 28672593348eSBarry Smith c->ilen[i] = a->ilen[i]; 28682593348eSBarry Smith } 28692593348eSBarry Smith 28702593348eSBarry Smith /* allocate the matrix space */ 2871a96a251dSBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr); 2872c4992f7dSBarry Smith c->singlemalloc = PETSC_TRUE; 2873c1ac3661SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2874b6490206SBarry Smith if (mbs > 0) { 2875c1ac3661SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 28762e8a6d31SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 2877549d3d68SSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28782e8a6d31SBarry Smith } else { 2879549d3d68SSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28802593348eSBarry Smith } 28812593348eSBarry Smith } 28822593348eSBarry Smith c->roworiented = a->roworiented; 28832593348eSBarry Smith c->nonew = a->nonew; 2884d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)A)->comm,A->rmap,C->rmap);CHKERRQ(ierr); 2885d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)A)->comm,A->cmap,C->cmap);CHKERRQ(ierr); 28865c9eb25fSBarry Smith c->bs2 = a->bs2; 28875c9eb25fSBarry Smith c->mbs = a->mbs; 28885c9eb25fSBarry Smith c->nbs = a->nbs; 28892593348eSBarry Smith 28902593348eSBarry Smith if (a->diag) { 2891c1ac3661SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr); 289252e6d16bSBarry Smith ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2893b6490206SBarry Smith for (i=0; i<mbs; i++) { 28942593348eSBarry Smith c->diag[i] = a->diag[i]; 28952593348eSBarry Smith } 289698305bb5SBarry Smith } else c->diag = 0; 28972593348eSBarry Smith c->nz = a->nz; 28982593348eSBarry Smith c->maxnz = a->maxnz; 28992593348eSBarry Smith c->solve_work = 0; 29007fc0212eSBarry Smith c->mult_work = 0; 2901e6b907acSBarry Smith c->free_a = PETSC_TRUE; 2902e6b907acSBarry Smith c->free_ij = PETSC_TRUE; 2903273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2904273d9f13SBarry Smith C->assembled = PETSC_TRUE; 290588e51ccdSHong Zhang 290688e51ccdSHong Zhang c->compressedrow.use = a->compressedrow.use; 290788e51ccdSHong Zhang c->compressedrow.nrows = a->compressedrow.nrows; 290888e51ccdSHong Zhang c->compressedrow.checked = a->compressedrow.checked; 290988e51ccdSHong Zhang if ( a->compressedrow.checked && a->compressedrow.use){ 291088e51ccdSHong Zhang i = a->compressedrow.nrows; 291188e51ccdSHong Zhang ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr); 291288e51ccdSHong Zhang c->compressedrow.rindex = c->compressedrow.i + i + 1; 291388e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr); 291488e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr); 291588e51ccdSHong Zhang } else { 291688e51ccdSHong Zhang c->compressedrow.use = PETSC_FALSE; 291788e51ccdSHong Zhang c->compressedrow.i = PETSC_NULL; 291888e51ccdSHong Zhang c->compressedrow.rindex = PETSC_NULL; 291988e51ccdSHong Zhang } 292088e51ccdSHong Zhang C->same_nonzero = A->same_nonzero; 29217adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 29223a40ed3dSBarry Smith PetscFunctionReturn(0); 29232593348eSBarry Smith } 29242593348eSBarry Smith 29254a2ae208SSatish Balay #undef __FUNCT__ 2926b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ" 2927b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 2928b24902e0SBarry Smith { 2929b24902e0SBarry Smith PetscErrorCode ierr; 2930b24902e0SBarry Smith 2931b24902e0SBarry Smith PetscFunctionBegin; 29325c9eb25fSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr); 2933d0f46423SBarry Smith ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 29345c9eb25fSBarry Smith ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr); 2935719d5645SBarry Smith ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues); 2936b24902e0SBarry Smith PetscFunctionReturn(0); 2937b24902e0SBarry Smith } 2938b24902e0SBarry Smith 2939b24902e0SBarry Smith #undef __FUNCT__ 29404a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ" 2941a313700dSBarry Smith PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, const MatType type,Mat *A) 29422593348eSBarry Smith { 2943b6490206SBarry Smith Mat_SeqBAIJ *a; 29442593348eSBarry Smith Mat B; 29456849ba73SBarry Smith PetscErrorCode ierr; 2946b24ad042SBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs=1; 2947c1ac3661SBarry Smith PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 2948c1ac3661SBarry Smith PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows; 2949c1ac3661SBarry Smith PetscInt *masked,nmask,tmp,bs2,ishift; 2950b24ad042SBarry Smith PetscMPIInt size; 2951b24ad042SBarry Smith int fd; 295287828ca2SBarry Smith PetscScalar *aa; 295319bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 29542593348eSBarry Smith 29553a40ed3dSBarry Smith PetscFunctionBegin; 29568c07d4e3SBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr); 29578c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 29588c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2959de6a44a3SBarry Smith bs2 = bs*bs; 2960b6490206SBarry Smith 2961d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 296229bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 2963b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 29640752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 2965552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 29662593348eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 29672593348eSBarry Smith 2968d64ed03dSBarry Smith if (header[3] < 0) { 296929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ"); 2970d64ed03dSBarry Smith } 2971d64ed03dSBarry Smith 297229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 297335aab85fSBarry Smith 297435aab85fSBarry Smith /* 297535aab85fSBarry Smith This code adds extra rows to make sure the number of rows is 297635aab85fSBarry Smith divisible by the blocksize 297735aab85fSBarry Smith */ 2978b6490206SBarry Smith mbs = M/bs; 297935aab85fSBarry Smith extra_rows = bs - M + bs*(mbs); 298035aab85fSBarry Smith if (extra_rows == bs) extra_rows = 0; 298135aab85fSBarry Smith else mbs++; 298235aab85fSBarry Smith if (extra_rows) { 29831e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 298435aab85fSBarry Smith } 2985b6490206SBarry Smith 29862593348eSBarry Smith /* read in row lengths */ 2987c1ac3661SBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 29880752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 298935aab85fSBarry Smith for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 29902593348eSBarry Smith 2991b6490206SBarry Smith /* read in column indices */ 2992c1ac3661SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr); 29930752156aSBarry Smith ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 299435aab85fSBarry Smith for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 2995b6490206SBarry Smith 2996b6490206SBarry Smith /* loop over row lengths determining block row lengths */ 2997c1ac3661SBarry Smith ierr = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr); 2998c1ac3661SBarry Smith ierr = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr); 2999c1ac3661SBarry Smith ierr = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 3000c1ac3661SBarry Smith ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 300135aab85fSBarry Smith masked = mask + mbs; 3002b6490206SBarry Smith rowcount = 0; nzcount = 0; 3003b6490206SBarry Smith for (i=0; i<mbs; i++) { 300435aab85fSBarry Smith nmask = 0; 3005b6490206SBarry Smith for (j=0; j<bs; j++) { 3006b6490206SBarry Smith kmax = rowlengths[rowcount]; 3007b6490206SBarry Smith for (k=0; k<kmax; k++) { 300835aab85fSBarry Smith tmp = jj[nzcount++]/bs; 300935aab85fSBarry Smith if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 3010b6490206SBarry Smith } 3011b6490206SBarry Smith rowcount++; 3012b6490206SBarry Smith } 301335aab85fSBarry Smith browlengths[i] += nmask; 301435aab85fSBarry Smith /* zero out the mask elements we set */ 301535aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3016b6490206SBarry Smith } 3017b6490206SBarry Smith 30182593348eSBarry Smith /* create our matrix */ 3019f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&B); 3020f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows); 302178ae41b4SKris Buschelman ierr = MatSetType(B,type);CHKERRQ(ierr); 3022ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr); 3023b6490206SBarry Smith a = (Mat_SeqBAIJ*)B->data; 30242593348eSBarry Smith 30252593348eSBarry Smith /* set matrix "i" values */ 3026de6a44a3SBarry Smith a->i[0] = 0; 3027b6490206SBarry Smith for (i=1; i<= mbs; i++) { 3028b6490206SBarry Smith a->i[i] = a->i[i-1] + browlengths[i-1]; 3029b6490206SBarry Smith a->ilen[i-1] = browlengths[i-1]; 30302593348eSBarry Smith } 3031b6490206SBarry Smith a->nz = 0; 3032b6490206SBarry Smith for (i=0; i<mbs; i++) a->nz += browlengths[i]; 30332593348eSBarry Smith 3034b6490206SBarry Smith /* read in nonzero values */ 303587828ca2SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 30360752156aSBarry Smith ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 303735aab85fSBarry Smith for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 3038b6490206SBarry Smith 3039b6490206SBarry Smith /* set "a" and "j" values into matrix */ 3040b6490206SBarry Smith nzcount = 0; jcount = 0; 3041b6490206SBarry Smith for (i=0; i<mbs; i++) { 3042b6490206SBarry Smith nzcountb = nzcount; 304335aab85fSBarry Smith nmask = 0; 3044b6490206SBarry Smith for (j=0; j<bs; j++) { 3045b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 3046b6490206SBarry Smith for (k=0; k<kmax; k++) { 304735aab85fSBarry Smith tmp = jj[nzcount++]/bs; 304835aab85fSBarry Smith if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 3049b6490206SBarry Smith } 3050b6490206SBarry Smith } 3051de6a44a3SBarry Smith /* sort the masked values */ 3052433994e6SBarry Smith ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 3053de6a44a3SBarry Smith 3054b6490206SBarry Smith /* set "j" values into matrix */ 3055b6490206SBarry Smith maskcount = 1; 305635aab85fSBarry Smith for (j=0; j<nmask; j++) { 305735aab85fSBarry Smith a->j[jcount++] = masked[j]; 3058de6a44a3SBarry Smith mask[masked[j]] = maskcount++; 3059b6490206SBarry Smith } 3060b6490206SBarry Smith /* set "a" values into matrix */ 3061de6a44a3SBarry Smith ishift = bs2*a->i[i]; 3062b6490206SBarry Smith for (j=0; j<bs; j++) { 3063b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 3064b6490206SBarry Smith for (k=0; k<kmax; k++) { 3065de6a44a3SBarry Smith tmp = jj[nzcountb]/bs ; 3066de6a44a3SBarry Smith block = mask[tmp] - 1; 3067de6a44a3SBarry Smith point = jj[nzcountb] - bs*tmp; 3068de6a44a3SBarry Smith idx = ishift + bs2*block + j + bs*point; 3069375fe846SBarry Smith a->a[idx] = (MatScalar)aa[nzcountb++]; 3070b6490206SBarry Smith } 3071b6490206SBarry Smith } 307235aab85fSBarry Smith /* zero out the mask elements we set */ 307335aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3074b6490206SBarry Smith } 307529bbc08cSBarry Smith if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 3076b6490206SBarry Smith 3077606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3078606d414cSSatish Balay ierr = PetscFree(browlengths);CHKERRQ(ierr); 3079606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 3080606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 3081606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 3082b6490206SBarry Smith 308378ae41b4SKris Buschelman ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 308478ae41b4SKris Buschelman ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 30859c01be13SBarry Smith ierr = MatView_Private(B);CHKERRQ(ierr); 308678ae41b4SKris Buschelman 308778ae41b4SKris Buschelman *A = B; 30883a40ed3dSBarry Smith PetscFunctionReturn(0); 30892593348eSBarry Smith } 30902593348eSBarry Smith 30914a2ae208SSatish Balay #undef __FUNCT__ 30924a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ" 3093273d9f13SBarry Smith /*@C 3094273d9f13SBarry Smith MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 3095273d9f13SBarry Smith compressed row) format. For good matrix assembly performance the 3096273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3097273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3098273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 30992593348eSBarry Smith 3100273d9f13SBarry Smith Collective on MPI_Comm 3101273d9f13SBarry Smith 3102273d9f13SBarry Smith Input Parameters: 3103273d9f13SBarry Smith + comm - MPI communicator, set to PETSC_COMM_SELF 3104273d9f13SBarry Smith . bs - size of block 3105273d9f13SBarry Smith . m - number of rows 3106273d9f13SBarry Smith . n - number of columns 310735d8aa7fSBarry Smith . nz - number of nonzero blocks per block row (same for all rows) 310835d8aa7fSBarry Smith - nnz - array containing the number of nonzero blocks in the various block rows 3109273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3110273d9f13SBarry Smith 3111273d9f13SBarry Smith Output Parameter: 3112273d9f13SBarry Smith . A - the matrix 3113273d9f13SBarry Smith 3114175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3115ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3116175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3117175b88e8SBarry Smith 3118273d9f13SBarry Smith Options Database Keys: 3119273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3120273d9f13SBarry Smith block calculations (much slower) 3121273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3122273d9f13SBarry Smith 3123273d9f13SBarry Smith Level: intermediate 3124273d9f13SBarry Smith 3125273d9f13SBarry Smith Notes: 3126d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 3127d1be2dadSMatthew Knepley 312849a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 312949a6f317SBarry Smith 313035d8aa7fSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 313135d8aa7fSBarry Smith 3132273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3133273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3134273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3135273d9f13SBarry Smith 3136273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3137273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3138273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3139273d9f13SBarry Smith matrices. 3140273d9f13SBarry Smith 3141273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ() 3142273d9f13SBarry Smith @*/ 3143be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 3144273d9f13SBarry Smith { 3145dfbe8321SBarry Smith PetscErrorCode ierr; 3146273d9f13SBarry Smith 3147273d9f13SBarry Smith PetscFunctionBegin; 3148f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3149f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 3150273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3151ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 3152273d9f13SBarry Smith PetscFunctionReturn(0); 3153273d9f13SBarry Smith } 3154273d9f13SBarry Smith 31554a2ae208SSatish Balay #undef __FUNCT__ 31564a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation" 3157273d9f13SBarry Smith /*@C 3158273d9f13SBarry Smith MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3159273d9f13SBarry Smith per row in the matrix. For good matrix assembly performance the 3160273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3161273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3162273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 3163273d9f13SBarry Smith 3164273d9f13SBarry Smith Collective on MPI_Comm 3165273d9f13SBarry Smith 3166273d9f13SBarry Smith Input Parameters: 3167273d9f13SBarry Smith + A - the matrix 3168273d9f13SBarry Smith . bs - size of block 3169273d9f13SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 3170273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows 3171273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3172273d9f13SBarry Smith 3173273d9f13SBarry Smith Options Database Keys: 3174273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3175273d9f13SBarry Smith block calculations (much slower) 3176273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3177273d9f13SBarry Smith 3178273d9f13SBarry Smith Level: intermediate 3179273d9f13SBarry Smith 3180273d9f13SBarry Smith Notes: 318149a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 318249a6f317SBarry Smith 3183aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3184aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3185aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3186aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3187aa95bbe8SBarry Smith 3188273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3189273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3190273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3191273d9f13SBarry Smith 3192273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3193273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3194273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3195273d9f13SBarry Smith matrices. 3196273d9f13SBarry Smith 3197aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo() 3198273d9f13SBarry Smith @*/ 3199be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 3200273d9f13SBarry Smith { 3201c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]); 3202273d9f13SBarry Smith 3203273d9f13SBarry Smith PetscFunctionBegin; 3204a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3205a23d5eceSKris Buschelman if (f) { 3206a23d5eceSKris Buschelman ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr); 3207273d9f13SBarry Smith } 3208273d9f13SBarry Smith PetscFunctionReturn(0); 3209273d9f13SBarry Smith } 3210a1d92eedSBarry Smith 3211c75a6043SHong Zhang #undef __FUNCT__ 3212725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR" 3213725b52f3SLisandro Dalcin /*@C 3214725b52f3SLisandro Dalcin MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format 3215725b52f3SLisandro Dalcin (the default sequential PETSc format). 3216725b52f3SLisandro Dalcin 3217725b52f3SLisandro Dalcin Collective on MPI_Comm 3218725b52f3SLisandro Dalcin 3219725b52f3SLisandro Dalcin Input Parameters: 3220725b52f3SLisandro Dalcin + A - the matrix 3221725b52f3SLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 3222725b52f3SLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 3223725b52f3SLisandro Dalcin - v - optional values in the matrix 3224725b52f3SLisandro Dalcin 3225725b52f3SLisandro Dalcin Level: developer 3226725b52f3SLisandro Dalcin 3227725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse 3228725b52f3SLisandro Dalcin 3229725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ 3230725b52f3SLisandro Dalcin @*/ 3231725b52f3SLisandro Dalcin PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3232725b52f3SLisandro Dalcin { 3233725b52f3SLisandro Dalcin PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 3234725b52f3SLisandro Dalcin 3235725b52f3SLisandro Dalcin PetscFunctionBegin; 3236725b52f3SLisandro Dalcin ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 3237725b52f3SLisandro Dalcin if (f) { 3238725b52f3SLisandro Dalcin ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 3239725b52f3SLisandro Dalcin } 3240725b52f3SLisandro Dalcin PetscFunctionReturn(0); 3241725b52f3SLisandro Dalcin } 3242725b52f3SLisandro Dalcin 3243725b52f3SLisandro Dalcin 3244725b52f3SLisandro Dalcin #undef __FUNCT__ 3245c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays" 3246c75a6043SHong Zhang /*@ 3247c75a6043SHong Zhang MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements 3248c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 3249c75a6043SHong Zhang 3250c75a6043SHong Zhang Collective on MPI_Comm 3251c75a6043SHong Zhang 3252c75a6043SHong Zhang Input Parameters: 3253c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 3254c75a6043SHong Zhang . bs - size of block 3255c75a6043SHong Zhang . m - number of rows 3256c75a6043SHong Zhang . n - number of columns 3257c75a6043SHong Zhang . i - row indices 3258c75a6043SHong Zhang . j - column indices 3259c75a6043SHong Zhang - a - matrix values 3260c75a6043SHong Zhang 3261c75a6043SHong Zhang Output Parameter: 3262c75a6043SHong Zhang . mat - the matrix 3263c75a6043SHong Zhang 3264c75a6043SHong Zhang Level: intermediate 3265c75a6043SHong Zhang 3266c75a6043SHong Zhang Notes: 3267c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 3268c75a6043SHong Zhang once the matrix is destroyed 3269c75a6043SHong Zhang 3270c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 3271c75a6043SHong Zhang 3272c75a6043SHong Zhang The i and j indices are 0 based 3273c75a6043SHong Zhang 3274c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ() 3275c75a6043SHong Zhang 3276c75a6043SHong Zhang @*/ 3277c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat) 3278c75a6043SHong Zhang { 3279c75a6043SHong Zhang PetscErrorCode ierr; 3280c75a6043SHong Zhang PetscInt ii; 3281c75a6043SHong Zhang Mat_SeqBAIJ *baij; 3282c75a6043SHong Zhang 3283c75a6043SHong Zhang PetscFunctionBegin; 3284c75a6043SHong Zhang if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 3285c75a6043SHong Zhang if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3286c75a6043SHong Zhang 3287c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3288c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 3289c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr); 3290c75a6043SHong Zhang ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 3291c75a6043SHong Zhang baij = (Mat_SeqBAIJ*)(*mat)->data; 3292c75a6043SHong Zhang ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr); 3293c75a6043SHong Zhang 3294c75a6043SHong Zhang baij->i = i; 3295c75a6043SHong Zhang baij->j = j; 3296c75a6043SHong Zhang baij->a = a; 3297c75a6043SHong Zhang baij->singlemalloc = PETSC_FALSE; 3298c75a6043SHong Zhang baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 3299e6b907acSBarry Smith baij->free_a = PETSC_FALSE; 3300e6b907acSBarry Smith baij->free_ij = PETSC_FALSE; 3301c75a6043SHong Zhang 3302c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 3303c75a6043SHong Zhang baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii]; 3304c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3305c75a6043SHong Zhang if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 3306c75a6043SHong Zhang #endif 3307c75a6043SHong Zhang } 3308c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3309c75a6043SHong Zhang for (ii=0; ii<baij->i[m]; ii++) { 3310c75a6043SHong Zhang if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 3311c75a6043SHong Zhang if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 3312c75a6043SHong Zhang } 3313c75a6043SHong Zhang #endif 3314c75a6043SHong Zhang 3315c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3316c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3317c75a6043SHong Zhang PetscFunctionReturn(0); 3318c75a6043SHong Zhang } 3319