xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 5c9eb25f753630cfd361293e05e7358a00a954ac)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
32593348eSBarry Smith /*
4b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
52593348eSBarry Smith   matrix storage format.
62593348eSBarry Smith */
770f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h"
81a6a6d98SBarry Smith #include "src/inline/spops.h"
9325e03aeSBarry Smith #include "petscsys.h"                     /*I "petscmat.h" I*/
103b547af2SSatish Balay 
11b01c7715SBarry Smith #include "src/inline/ilu.h"
12b01c7715SBarry Smith 
13b01c7715SBarry Smith #undef __FUNCT__
1443516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal"
15bc08b0f1SBarry Smith /*@
1643516a2dSKris Buschelman   MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries.
1743516a2dSKris Buschelman 
1843516a2dSKris Buschelman   Collective on Mat
1943516a2dSKris Buschelman 
2043516a2dSKris Buschelman   Input Parameters:
2143516a2dSKris Buschelman . mat - the matrix
2243516a2dSKris Buschelman 
2343516a2dSKris Buschelman   Level: advanced
2443516a2dSKris Buschelman @*/
2546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat)
2643516a2dSKris Buschelman {
2743516a2dSKris Buschelman   PetscErrorCode ierr,(*f)(Mat);
2843516a2dSKris Buschelman 
2943516a2dSKris Buschelman   PetscFunctionBegin;
3043516a2dSKris Buschelman   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
3143516a2dSKris Buschelman   if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
3243516a2dSKris Buschelman   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
3343516a2dSKris Buschelman 
3443516a2dSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr);
3543516a2dSKris Buschelman   if (f) {
3643516a2dSKris Buschelman     ierr = (*f)(mat);CHKERRQ(ierr);
3743516a2dSKris Buschelman   } else {
3843516a2dSKris Buschelman     SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ.");
3943516a2dSKris Buschelman   }
4043516a2dSKris Buschelman   PetscFunctionReturn(0);
4143516a2dSKris Buschelman }
4243516a2dSKris Buschelman 
4343516a2dSKris Buschelman EXTERN_C_BEGIN
4443516a2dSKris Buschelman #undef __FUNCT__
45b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ"
4646129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A)
47b01c7715SBarry Smith {
48b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
496849ba73SBarry Smith   PetscErrorCode ierr;
50899cda47SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap.bs,mbs = a->mbs;
5197e5c40aSBarry Smith   MatScalar      *v = a->a,*odiag,*diag,*mdiag;
5262bba022SBarry Smith   PetscReal      shift = 0.0;
53b01c7715SBarry Smith 
54b01c7715SBarry Smith   PetscFunctionBegin;
55b01c7715SBarry Smith   if (a->idiagvalid) PetscFunctionReturn(0);
56b01c7715SBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
57b01c7715SBarry Smith   diag_offset = a->diag;
58b01c7715SBarry Smith   if (!a->idiag) {
59b01c7715SBarry Smith     ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr);
60b01c7715SBarry Smith   }
61b01c7715SBarry Smith   diag  = a->idiag;
62b01c7715SBarry Smith   mdiag = a->idiag+bs*bs*mbs;
63b01c7715SBarry Smith   /* factor and invert each block */
64521d7252SBarry Smith   switch (bs){
65b01c7715SBarry Smith     case 2:
66b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
67b01c7715SBarry Smith         odiag   = v + 4*diag_offset[i];
68b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
69b01c7715SBarry Smith 	mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
7062bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr);
71b01c7715SBarry Smith 	diag    += 4;
72b01c7715SBarry Smith 	mdiag   += 4;
73b01c7715SBarry Smith       }
74b01c7715SBarry Smith       break;
75b01c7715SBarry Smith     case 3:
76b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
77b01c7715SBarry Smith         odiag    = v + 9*diag_offset[i];
78b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
79b01c7715SBarry Smith         diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
80b01c7715SBarry Smith         diag[8]  = odiag[8];
81b01c7715SBarry Smith         mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
82b01c7715SBarry Smith         mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7];
83b01c7715SBarry Smith         mdiag[8] = odiag[8];
8462bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr);
85b01c7715SBarry Smith 	diag    += 9;
86b01c7715SBarry Smith 	mdiag   += 9;
87b01c7715SBarry Smith       }
88b01c7715SBarry Smith       break;
89b01c7715SBarry Smith     case 4:
90b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
91b01c7715SBarry Smith         odiag  = v + 16*diag_offset[i];
92b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
93b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
9462bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr);
95b01c7715SBarry Smith 	diag  += 16;
96b01c7715SBarry Smith 	mdiag += 16;
97b01c7715SBarry Smith       }
98b01c7715SBarry Smith       break;
99b01c7715SBarry Smith     case 5:
100b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
101b01c7715SBarry Smith         odiag = v + 25*diag_offset[i];
102b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
103b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
10462bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr);
105b01c7715SBarry Smith 	diag  += 25;
106b01c7715SBarry Smith 	mdiag += 25;
107b01c7715SBarry Smith       }
108b01c7715SBarry Smith       break;
109b01c7715SBarry Smith     default:
110521d7252SBarry Smith       SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs);
111b01c7715SBarry Smith   }
112b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
113b01c7715SBarry Smith   PetscFunctionReturn(0);
114b01c7715SBarry Smith }
11543516a2dSKris Buschelman EXTERN_C_END
116b01c7715SBarry Smith 
117b01c7715SBarry Smith #undef __FUNCT__
1186d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1"
1196d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1206d3beeddSMatthew Knepley {
1216d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
1226d3beeddSMatthew Knepley   PetscScalar        *x,x1,s1;
123dd6ea824SBarry Smith   const PetscScalar  *b;
124dd6ea824SBarry Smith   const MatScalar    *aa = a->a, *idiag,*mdiag,*v;
1256d3beeddSMatthew Knepley   PetscErrorCode     ierr;
1266d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
1276d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
1286d3beeddSMatthew Knepley 
1296d3beeddSMatthew Knepley   PetscFunctionBegin;
1306d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
1316d3beeddSMatthew Knepley   its = its*lits;
1326d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1336d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
1346d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
1356d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
1366d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
1376d3beeddSMatthew Knepley 
1386d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
1396d3beeddSMatthew Knepley 
1406d3beeddSMatthew Knepley   diag  = a->diag;
1416d3beeddSMatthew Knepley   idiag = a->idiag;
1426d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1436d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
1446d3beeddSMatthew Knepley 
1456d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
1466d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
1476d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0];
1486d3beeddSMatthew Knepley       i2     = 1;
1496d3beeddSMatthew Knepley       idiag += 1;
1506d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
1516d3beeddSMatthew Knepley         v     = aa + ai[i];
1526d3beeddSMatthew Knepley         vi    = aj + ai[i];
1536d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
1546d3beeddSMatthew Knepley         s1    = b[i2];
1556d3beeddSMatthew Knepley         while (nz--) {
1566d3beeddSMatthew Knepley           idx  = (*vi++);
1576d3beeddSMatthew Knepley           x1   = x[idx];
1586d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1596d3beeddSMatthew Knepley           v   += 1;
1606d3beeddSMatthew Knepley         }
1616d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
1626d3beeddSMatthew Knepley         idiag   += 1;
1636d3beeddSMatthew Knepley         i2      += 1;
1646d3beeddSMatthew Knepley       }
1656d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
1666d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1676d3beeddSMatthew Knepley     }
1686d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
1696d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1706d3beeddSMatthew Knepley       i2    = 0;
1716d3beeddSMatthew Knepley       mdiag = a->idiag+a->mbs;
1726d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
1736d3beeddSMatthew Knepley         x1      = x[i2];
1746d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1;
1756d3beeddSMatthew Knepley         mdiag  += 1;
1766d3beeddSMatthew Knepley         i2     += 1;
1776d3beeddSMatthew Knepley       }
1786d3beeddSMatthew Knepley       ierr = PetscLogFlops(m);CHKERRQ(ierr);
1796d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1806d3beeddSMatthew Knepley       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
1816d3beeddSMatthew Knepley     }
1826d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
1836d3beeddSMatthew Knepley       idiag   = a->idiag+a->mbs - 1;
1846d3beeddSMatthew Knepley       i2      = m - 1;
1856d3beeddSMatthew Knepley       x1      = x[i2];
1866d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1;
1876d3beeddSMatthew Knepley       idiag -= 1;
1886d3beeddSMatthew Knepley       i2    -= 1;
1896d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
1906d3beeddSMatthew Knepley         v     = aa + (diag[i]+1);
1916d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
1926d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
1936d3beeddSMatthew Knepley         s1    = x[i2];
1946d3beeddSMatthew Knepley         while (nz--) {
1956d3beeddSMatthew Knepley           idx  = (*vi++);
1966d3beeddSMatthew Knepley           x1   = x[idx];
1976d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1986d3beeddSMatthew Knepley           v   += 1;
1996d3beeddSMatthew Knepley         }
2006d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
2016d3beeddSMatthew Knepley         idiag   -= 2;
2026d3beeddSMatthew Knepley         i2      -= 1;
2036d3beeddSMatthew Knepley       }
2046d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
2056d3beeddSMatthew Knepley     }
2066d3beeddSMatthew Knepley   } else {
2076d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
2086d3beeddSMatthew Knepley   }
2096d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2106d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
2116d3beeddSMatthew Knepley   PetscFunctionReturn(0);
2126d3beeddSMatthew Knepley }
2136d3beeddSMatthew Knepley 
2146d3beeddSMatthew Knepley #undef __FUNCT__
215b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2"
216c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
217b01c7715SBarry Smith {
218b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
219b01c7715SBarry Smith   PetscScalar        *x,x1,x2,s1,s2;
220dd6ea824SBarry Smith   const PetscScalar  *b;
221dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
222dfbe8321SBarry Smith   PetscErrorCode     ierr;
223c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
224c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
225b01c7715SBarry Smith 
226b01c7715SBarry Smith   PetscFunctionBegin;
22751f519a2SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
228b01c7715SBarry Smith   its = its*lits;
22977431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
230b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
231b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
23271f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
233b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
234b01c7715SBarry Smith 
235b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
236b01c7715SBarry Smith 
237b01c7715SBarry Smith   diag  = a->diag;
238b01c7715SBarry Smith   idiag = a->idiag;
2391ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2401ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
241b01c7715SBarry Smith 
242b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
243b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
244b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[2];
245b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[3];
246b01c7715SBarry Smith       i2     = 2;
247b01c7715SBarry Smith       idiag += 4;
248b01c7715SBarry Smith       for (i=1; i<m; i++) {
249b01c7715SBarry Smith 	v     = aa + 4*ai[i];
250b01c7715SBarry Smith 	vi    = aj + ai[i];
251b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
252b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1];
253b01c7715SBarry Smith 	while (nz--) {
254b01c7715SBarry Smith 	  idx  = 2*(*vi++);
255b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
256b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
257b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
258b01c7715SBarry Smith 	  v   += 4;
259b01c7715SBarry Smith 	}
260b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
261b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
262b01c7715SBarry Smith         idiag   += 4;
263b01c7715SBarry Smith         i2      += 2;
264b01c7715SBarry Smith       }
265b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
266efee365bSSatish Balay       ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr);
267b01c7715SBarry Smith     }
268b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
269b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
270b01c7715SBarry Smith       i2    = 0;
271b01c7715SBarry Smith       mdiag = a->idiag+4*a->mbs;
272b01c7715SBarry Smith       for (i=0; i<m; i++) {
273b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1];
274b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[2]*x2;
275b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2;
276b01c7715SBarry Smith         mdiag  += 4;
277b01c7715SBarry Smith         i2     += 2;
278b01c7715SBarry Smith       }
279efee365bSSatish Balay       ierr = PetscLogFlops(6*m);CHKERRQ(ierr);
280b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
281899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
282b01c7715SBarry Smith     }
283b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
284b01c7715SBarry Smith       idiag   = a->idiag+4*a->mbs - 4;
285b01c7715SBarry Smith       i2      = 2*m - 2;
286b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1];
287b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[2]*x2;
288b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[3]*x2;
289b01c7715SBarry Smith       idiag -= 4;
290b01c7715SBarry Smith       i2    -= 2;
291b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
292b01c7715SBarry Smith 	v     = aa + 4*(diag[i]+1);
293b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
294b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
295b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1];
296b01c7715SBarry Smith 	while (nz--) {
297b01c7715SBarry Smith 	  idx  = 2*(*vi++);
298b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
299b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
300b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
301b01c7715SBarry Smith 	  v   += 4;
302b01c7715SBarry Smith 	}
303b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
304b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
305b01c7715SBarry Smith         idiag   -= 4;
306b01c7715SBarry Smith         i2      -= 2;
307b01c7715SBarry Smith       }
308efee365bSSatish Balay       ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr);
309b01c7715SBarry Smith     }
310b01c7715SBarry Smith   } else {
311634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
312b01c7715SBarry Smith   }
3131ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3141ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
315b01c7715SBarry Smith   PetscFunctionReturn(0);
316b01c7715SBarry Smith }
317b01c7715SBarry Smith 
318b01c7715SBarry Smith #undef __FUNCT__
319b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3"
320c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
321b01c7715SBarry Smith {
322b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
323b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,s1,s2,s3;
324dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
325dd6ea824SBarry Smith   const PetscScalar  *b;
326dfbe8321SBarry Smith   PetscErrorCode     ierr;
327c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
328c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
329b01c7715SBarry Smith 
330b01c7715SBarry Smith   PetscFunctionBegin;
331b01c7715SBarry Smith   its = its*lits;
33271f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
33377431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
334b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
335b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
33671f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
337b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
338b01c7715SBarry Smith 
339b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
340b01c7715SBarry Smith 
341b01c7715SBarry Smith   diag  = a->diag;
342b01c7715SBarry Smith   idiag = a->idiag;
3431ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3441ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
345b01c7715SBarry Smith 
346b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
347b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
348b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6];
349b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7];
350b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8];
351b01c7715SBarry Smith       i2     = 3;
352b01c7715SBarry Smith       idiag += 9;
353b01c7715SBarry Smith       for (i=1; i<m; i++) {
354b01c7715SBarry Smith         v     = aa + 9*ai[i];
355b01c7715SBarry Smith         vi    = aj + ai[i];
356b01c7715SBarry Smith         nz    = diag[i] - ai[i];
357b01c7715SBarry Smith         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2];
358b01c7715SBarry Smith         while (nz--) {
359b01c7715SBarry Smith           idx  = 3*(*vi++);
360b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx];x3 = x[2+idx];
361b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
362b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
363b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
364b01c7715SBarry Smith           v   += 9;
365b01c7715SBarry Smith         }
366b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
367b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
368b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
369b01c7715SBarry Smith         idiag   += 9;
370b01c7715SBarry Smith         i2      += 3;
371b01c7715SBarry Smith       }
372b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
373efee365bSSatish Balay       ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr);
374b01c7715SBarry Smith     }
375b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
376b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
377b01c7715SBarry Smith       i2    = 0;
378b01c7715SBarry Smith       mdiag = a->idiag+9*a->mbs;
379b01c7715SBarry Smith       for (i=0; i<m; i++) {
380b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
381b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3;
382b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3;
383b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3;
384b01c7715SBarry Smith         mdiag  += 9;
385b01c7715SBarry Smith         i2     += 3;
386b01c7715SBarry Smith       }
387efee365bSSatish Balay       ierr = PetscLogFlops(15*m);CHKERRQ(ierr);
388b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
389899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
390b01c7715SBarry Smith     }
391b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
392b01c7715SBarry Smith       idiag   = a->idiag+9*a->mbs - 9;
393b01c7715SBarry Smith       i2      = 3*m - 3;
394b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
395b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3;
396b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3;
397b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3;
398b01c7715SBarry Smith       idiag -= 9;
399b01c7715SBarry Smith       i2    -= 3;
400b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
401b01c7715SBarry Smith         v     = aa + 9*(diag[i]+1);
402b01c7715SBarry Smith         vi    = aj + diag[i] + 1;
403b01c7715SBarry Smith         nz    = ai[i+1] - diag[i] - 1;
404b01c7715SBarry Smith         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2];
405b01c7715SBarry Smith         while (nz--) {
406b01c7715SBarry Smith           idx  = 3*(*vi++);
407b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx];
408b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
409b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
410b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
411b01c7715SBarry Smith           v   += 9;
412b01c7715SBarry Smith         }
413b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
414b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
415b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
416b01c7715SBarry Smith         idiag   -= 9;
417b01c7715SBarry Smith         i2      -= 3;
418b01c7715SBarry Smith       }
419efee365bSSatish Balay       ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr);
420b01c7715SBarry Smith     }
421b01c7715SBarry Smith   } else {
422634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
423b01c7715SBarry Smith   }
4241ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4251ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
426b01c7715SBarry Smith   PetscFunctionReturn(0);
427b01c7715SBarry Smith }
428b01c7715SBarry Smith 
429b01c7715SBarry Smith #undef __FUNCT__
430b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4"
431c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
432b01c7715SBarry Smith {
433b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
434b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,s1,s2,s3,s4;
435dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
436dd6ea824SBarry Smith   const PetscScalar  *b;
437dfbe8321SBarry Smith   PetscErrorCode     ierr;
438c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
439c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
440b01c7715SBarry Smith 
441b01c7715SBarry Smith   PetscFunctionBegin;
44271f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
443b01c7715SBarry Smith   its = its*lits;
44477431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
445b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
446b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
44771f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
448b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
449b01c7715SBarry Smith 
450b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
451b01c7715SBarry Smith 
452b01c7715SBarry Smith   diag  = a->diag;
453b01c7715SBarry Smith   idiag = a->idiag;
4541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4551ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
456b01c7715SBarry Smith 
457b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
458b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
459b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8]  + b[3]*idiag[12];
460b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9]  + b[3]*idiag[13];
461b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14];
462b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15];
463b01c7715SBarry Smith       i2     = 4;
464b01c7715SBarry Smith       idiag += 16;
465b01c7715SBarry Smith       for (i=1; i<m; i++) {
466b01c7715SBarry Smith 	v     = aa + 16*ai[i];
467b01c7715SBarry Smith 	vi    = aj + ai[i];
468b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
469b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3];
470b01c7715SBarry Smith 	while (nz--) {
471b01c7715SBarry Smith 	  idx  = 4*(*vi++);
472b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
473b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
474b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
475b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
476b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
477b01c7715SBarry Smith 	  v   += 16;
478b01c7715SBarry Smith 	}
479b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
480b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
481b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
482b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
483b01c7715SBarry Smith         idiag   += 16;
484b01c7715SBarry Smith         i2      += 4;
485b01c7715SBarry Smith       }
486b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
487efee365bSSatish Balay       ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr);
488b01c7715SBarry Smith     }
489b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
490b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
491b01c7715SBarry Smith       i2    = 0;
492b01c7715SBarry Smith       mdiag = a->idiag+16*a->mbs;
493b01c7715SBarry Smith       for (i=0; i<m; i++) {
494b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
495b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3  + mdiag[12]*x4;
496b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3  + mdiag[13]*x4;
497b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4;
498b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4;
499b01c7715SBarry Smith         mdiag  += 16;
500b01c7715SBarry Smith         i2     += 4;
501b01c7715SBarry Smith       }
502efee365bSSatish Balay       ierr = PetscLogFlops(28*m);CHKERRQ(ierr);
503b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
504899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
505b01c7715SBarry Smith     }
506b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
507b01c7715SBarry Smith       idiag   = a->idiag+16*a->mbs - 16;
508b01c7715SBarry Smith       i2      = 4*m - 4;
509b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
510b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3  + idiag[12]*x4;
511b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3  + idiag[13]*x4;
512b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4;
513b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4;
514b01c7715SBarry Smith       idiag -= 16;
515b01c7715SBarry Smith       i2    -= 4;
516b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
517b01c7715SBarry Smith 	v     = aa + 16*(diag[i]+1);
518b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
519b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
520b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3];
521b01c7715SBarry Smith 	while (nz--) {
522b01c7715SBarry Smith 	  idx  = 4*(*vi++);
523b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
524b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
525b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
526b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
527b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
528b01c7715SBarry Smith 	  v   += 16;
529b01c7715SBarry Smith 	}
530b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
531b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
532b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
533b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
534b01c7715SBarry Smith         idiag   -= 16;
535b01c7715SBarry Smith         i2      -= 4;
536b01c7715SBarry Smith       }
537efee365bSSatish Balay       ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr);
538b01c7715SBarry Smith     }
539b01c7715SBarry Smith   } else {
540634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
541b01c7715SBarry Smith   }
5421ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5431ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
544b01c7715SBarry Smith   PetscFunctionReturn(0);
545b01c7715SBarry Smith }
546b01c7715SBarry Smith 
547b01c7715SBarry Smith #undef __FUNCT__
548b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5"
549c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
550b01c7715SBarry Smith {
551b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
552b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5;
553dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
554dd6ea824SBarry Smith   const PetscScalar  *b;
555dfbe8321SBarry Smith   PetscErrorCode     ierr;
556c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
557c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
558b01c7715SBarry Smith 
559b01c7715SBarry Smith   PetscFunctionBegin;
56071f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
561b01c7715SBarry Smith   its = its*lits;
56277431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
563b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
564b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
56571f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
566b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
567b01c7715SBarry Smith 
568b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
569b01c7715SBarry Smith 
570b01c7715SBarry Smith   diag  = a->diag;
571b01c7715SBarry Smith   idiag = a->idiag;
5721ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5731ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
574b01c7715SBarry Smith 
575b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
576b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
577b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20];
578b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21];
579b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22];
580b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23];
581b01c7715SBarry Smith       x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24];
582b01c7715SBarry Smith       i2     = 5;
583b01c7715SBarry Smith       idiag += 25;
584b01c7715SBarry Smith       for (i=1; i<m; i++) {
585b01c7715SBarry Smith 	v     = aa + 25*ai[i];
586b01c7715SBarry Smith 	vi    = aj + ai[i];
587b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
588b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4];
589b01c7715SBarry Smith 	while (nz--) {
590b01c7715SBarry Smith 	  idx  = 5*(*vi++);
591b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
592b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
593b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
594b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
595b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
596b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
597b01c7715SBarry Smith 	  v   += 25;
598b01c7715SBarry Smith 	}
599b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
600b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
601b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
602b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
603b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
604b01c7715SBarry Smith         idiag   += 25;
605b01c7715SBarry Smith         i2      += 5;
606b01c7715SBarry Smith       }
607b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
608efee365bSSatish Balay       ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr);
609b01c7715SBarry Smith     }
610b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
611b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
612b01c7715SBarry Smith       i2    = 0;
613b01c7715SBarry Smith       mdiag = a->idiag+25*a->mbs;
614b01c7715SBarry Smith       for (i=0; i<m; i++) {
615b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
616b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5;
617b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5;
618b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5;
619b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5;
620b01c7715SBarry Smith         x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5;
621b01c7715SBarry Smith         mdiag  += 25;
622b01c7715SBarry Smith         i2     += 5;
623b01c7715SBarry Smith       }
624efee365bSSatish Balay       ierr = PetscLogFlops(45*m);CHKERRQ(ierr);
625b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
626899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
627b01c7715SBarry Smith     }
628b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
629b01c7715SBarry Smith       idiag   = a->idiag+25*a->mbs - 25;
630b01c7715SBarry Smith       i2      = 5*m - 5;
631b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
632b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5;
633b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5;
634b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5;
635b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5;
636b01c7715SBarry Smith       x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5;
637b01c7715SBarry Smith       idiag -= 25;
638b01c7715SBarry Smith       i2    -= 5;
639b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
640b01c7715SBarry Smith 	v     = aa + 25*(diag[i]+1);
641b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
642b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
643b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4];
644b01c7715SBarry Smith 	while (nz--) {
645b01c7715SBarry Smith 	  idx  = 5*(*vi++);
646b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
647b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
648b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
649b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
650b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
651b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
652b01c7715SBarry Smith 	  v   += 25;
653b01c7715SBarry Smith 	}
654b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
655b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
656b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
657b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
658b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
659b01c7715SBarry Smith         idiag   -= 25;
660b01c7715SBarry Smith         i2      -= 5;
661b01c7715SBarry Smith       }
662efee365bSSatish Balay       ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr);
663b01c7715SBarry Smith     }
664b01c7715SBarry Smith   } else {
665634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
666b01c7715SBarry Smith   }
6671ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
6681ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
669b01c7715SBarry Smith   PetscFunctionReturn(0);
670b01c7715SBarry Smith }
671b01c7715SBarry Smith 
6726d3beeddSMatthew Knepley #undef __FUNCT__
6736d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6"
6746d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
6756d3beeddSMatthew Knepley {
6766d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
6776d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6;
678dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
679dd6ea824SBarry Smith   const PetscScalar  *b;
6806d3beeddSMatthew Knepley   PetscErrorCode     ierr;
6816d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
6826d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
6836d3beeddSMatthew Knepley 
6846d3beeddSMatthew Knepley   PetscFunctionBegin;
6856d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
6866d3beeddSMatthew Knepley   its = its*lits;
6876d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
6886d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
6896d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
6906d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
6916d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
6926d3beeddSMatthew Knepley 
6936d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
6946d3beeddSMatthew Knepley 
6956d3beeddSMatthew Knepley   diag  = a->diag;
6966d3beeddSMatthew Knepley   idiag = a->idiag;
6976d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
6986d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
6996d3beeddSMatthew Knepley 
7006d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
7016d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
7026d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[6]  + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30];
7036d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[7]  + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31];
7046d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[8]  + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32];
7056d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[9]  + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33];
7066d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34];
7076d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35];
7086d3beeddSMatthew Knepley       i2     = 6;
7096d3beeddSMatthew Knepley       idiag += 36;
7106d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
7116d3beeddSMatthew Knepley         v     = aa + 36*ai[i];
7126d3beeddSMatthew Knepley         vi    = aj + ai[i];
7136d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
7146d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5];
7156d3beeddSMatthew Knepley         while (nz--) {
7166d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7176d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7186d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7196d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7206d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7216d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7226d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7236d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7246d3beeddSMatthew Knepley           v   += 36;
7256d3beeddSMatthew Knepley         }
7266d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7276d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7286d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7296d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7306d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7316d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7326d3beeddSMatthew Knepley         idiag   += 36;
7336d3beeddSMatthew Knepley         i2      += 6;
7346d3beeddSMatthew Knepley       }
7356d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
7366d3beeddSMatthew Knepley       ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr);
7376d3beeddSMatthew Knepley     }
7386d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
7396d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
7406d3beeddSMatthew Knepley       i2    = 0;
7416d3beeddSMatthew Knepley       mdiag = a->idiag+36*a->mbs;
7426d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
7436d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7446d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[6]*x2  + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6;
7456d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2  + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6;
7466d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2  + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6;
7476d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2  + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6;
7486d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6;
7496d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6;
7506d3beeddSMatthew Knepley         mdiag  += 36;
7516d3beeddSMatthew Knepley         i2     += 6;
7526d3beeddSMatthew Knepley       }
7536d3beeddSMatthew Knepley       ierr = PetscLogFlops(60*m);CHKERRQ(ierr);
7546d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
7556d3beeddSMatthew Knepley       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
7566d3beeddSMatthew Knepley     }
7576d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
7586d3beeddSMatthew Knepley       idiag   = a->idiag+36*a->mbs - 36;
7596d3beeddSMatthew Knepley       i2      = 6*m - 6;
7606d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7616d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[6]*x2  + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6;
7626d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[7]*x2  + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6;
7636d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[8]*x2  + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6;
7646d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[9]*x2  + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6;
7656d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6;
7666d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6;
7676d3beeddSMatthew Knepley       idiag -= 36;
7686d3beeddSMatthew Knepley       i2    -= 6;
7696d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
7706d3beeddSMatthew Knepley         v     = aa + 36*(diag[i]+1);
7716d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
7726d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
7736d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5];
7746d3beeddSMatthew Knepley         while (nz--) {
7756d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7766d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7776d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7786d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7796d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7806d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7816d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7826d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7836d3beeddSMatthew Knepley           v   += 36;
7846d3beeddSMatthew Knepley         }
7856d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7866d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7876d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7886d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7896d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7906d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7916d3beeddSMatthew Knepley         idiag   -= 36;
7926d3beeddSMatthew Knepley         i2      -= 6;
7936d3beeddSMatthew Knepley       }
7946d3beeddSMatthew Knepley       ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr);
7956d3beeddSMatthew Knepley     }
7966d3beeddSMatthew Knepley   } else {
7976d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
7986d3beeddSMatthew Knepley   }
7996d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
8006d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8016d3beeddSMatthew Knepley   PetscFunctionReturn(0);
8026d3beeddSMatthew Knepley }
8036d3beeddSMatthew Knepley 
8046d3beeddSMatthew Knepley #undef __FUNCT__
8056d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7"
8066d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
8076d3beeddSMatthew Knepley {
8086d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
8096d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7;
810dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
811dd6ea824SBarry Smith   const PetscScalar  *b;
8126d3beeddSMatthew Knepley   PetscErrorCode     ierr;
8136d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
8146d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
8156d3beeddSMatthew Knepley 
8166d3beeddSMatthew Knepley   PetscFunctionBegin;
8176d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
8186d3beeddSMatthew Knepley   its = its*lits;
8196d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
8206d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
8216d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
8226d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
8236d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
8246d3beeddSMatthew Knepley 
8256d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
8266d3beeddSMatthew Knepley 
8276d3beeddSMatthew Knepley   diag  = a->diag;
8286d3beeddSMatthew Knepley   idiag = a->idiag;
8296d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
8306d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8316d3beeddSMatthew Knepley 
8326d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
8336d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
8346d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[7]  + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42];
8356d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[8]  + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43];
8366d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[9]  + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44];
8376d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45];
8386d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46];
8396d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47];
8406d3beeddSMatthew Knepley       x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48];
8416d3beeddSMatthew Knepley       i2     = 7;
8426d3beeddSMatthew Knepley       idiag += 49;
8436d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
8446d3beeddSMatthew Knepley         v     = aa + 49*ai[i];
8456d3beeddSMatthew Knepley         vi    = aj + ai[i];
8466d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
8476d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6];
8486d3beeddSMatthew Knepley         while (nz--) {
8496d3beeddSMatthew Knepley           idx  = 7*(*vi++);
8506d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
8516d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
8526d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
8536d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
8546d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
8556d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
8566d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
8576d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
8586d3beeddSMatthew Knepley           v   += 49;
8596d3beeddSMatthew Knepley         }
8606d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
8616d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
8626d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
8636d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
8646d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
8656d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
8666d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
8676d3beeddSMatthew Knepley         idiag   += 49;
8686d3beeddSMatthew Knepley         i2      += 7;
8696d3beeddSMatthew Knepley       }
8706d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
8716d3beeddSMatthew Knepley       ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr);
8726d3beeddSMatthew Knepley     }
8736d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
8746d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
8756d3beeddSMatthew Knepley       i2    = 0;
8766d3beeddSMatthew Knepley       mdiag = a->idiag+49*a->mbs;
8776d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
8786d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8796d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[7]*x2  + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7;
8806d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2  + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7;
8816d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2  + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7;
8826d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7;
8836d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7;
8846d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7;
8856d3beeddSMatthew Knepley         x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7;
8866d3beeddSMatthew Knepley         mdiag  += 36;
8876d3beeddSMatthew Knepley         i2     += 6;
8886d3beeddSMatthew Knepley       }
8896d3beeddSMatthew Knepley       ierr = PetscLogFlops(93*m);CHKERRQ(ierr);
8906d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
8916d3beeddSMatthew Knepley       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
8926d3beeddSMatthew Knepley     }
8936d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
8946d3beeddSMatthew Knepley       idiag   = a->idiag+49*a->mbs - 49;
8956d3beeddSMatthew Knepley       i2      = 7*m - 7;
8966d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8976d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[7]*x2  + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7;
8986d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[8]*x2  + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7;
8996d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[9]*x2  + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7;
9006d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7;
9016d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7;
9026d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7;
9036d3beeddSMatthew Knepley       x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7;
9046d3beeddSMatthew Knepley       idiag -= 49;
9056d3beeddSMatthew Knepley       i2    -= 7;
9066d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
9076d3beeddSMatthew Knepley         v     = aa + 49*(diag[i]+1);
9086d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
9096d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
9106d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6];
9116d3beeddSMatthew Knepley         while (nz--) {
9126d3beeddSMatthew Knepley           idx  = 7*(*vi++);
9136d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
9146d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
9156d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
9166d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
9176d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
9186d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
9196d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
9206d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
9216d3beeddSMatthew Knepley           v   += 49;
9226d3beeddSMatthew Knepley         }
9236d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
9246d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
9256d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
9266d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
9276d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
9286d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
9296d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
9306d3beeddSMatthew Knepley         idiag   -= 49;
9316d3beeddSMatthew Knepley         i2      -= 7;
9326d3beeddSMatthew Knepley       }
9336d3beeddSMatthew Knepley       ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr);
9346d3beeddSMatthew Knepley     }
9356d3beeddSMatthew Knepley   } else {
9366d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
9376d3beeddSMatthew Knepley   }
9386d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
9396d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
9406d3beeddSMatthew Knepley   PetscFunctionReturn(0);
9416d3beeddSMatthew Knepley }
9426d3beeddSMatthew Knepley 
943af674e45SBarry Smith /*
94481824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
945af674e45SBarry Smith */
946af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
947af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
948af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
949af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
950af674e45SBarry Smith #endif
951af674e45SBarry Smith 
9529c8c1041SBarry Smith EXTERN_C_BEGIN
953af674e45SBarry Smith #undef __FUNCT__
954af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_"
955be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
956af674e45SBarry Smith {
957af674e45SBarry Smith   Mat               A = *AA;
958af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
959c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
960c1ac3661SBarry Smith   PetscInt          *ai=a->i,*ailen=a->ilen;
96117ec6a02SBarry Smith   PetscInt          *aj=a->j,stepval,lastcol = -1;
962f15d580aSBarry Smith   const PetscScalar *value = v;
9634bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
964af674e45SBarry Smith 
965af674e45SBarry Smith   PetscFunctionBegin;
9667adad957SLisandro Dalcin   if (A->rmap.bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
967af674e45SBarry Smith   stepval = (n-1)*4;
968af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
969af674e45SBarry Smith     row  = im[k];
970af674e45SBarry Smith     rp   = aj + ai[row];
971af674e45SBarry Smith     ap   = aa + 16*ai[row];
972af674e45SBarry Smith     nrow = ailen[row];
973af674e45SBarry Smith     low  = 0;
97417ec6a02SBarry Smith     high = nrow;
975af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
976af674e45SBarry Smith       col = in[l];
97717ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
97817ec6a02SBarry Smith       lastcol = col;
9791e3347e8SBarry Smith       value = v + k*(stepval+4 + l)*4;
980af674e45SBarry Smith       while (high-low > 7) {
981af674e45SBarry Smith         t = (low+high)/2;
982af674e45SBarry Smith         if (rp[t] > col) high = t;
983af674e45SBarry Smith         else             low  = t;
984af674e45SBarry Smith       }
985af674e45SBarry Smith       for (i=low; i<high; i++) {
986af674e45SBarry Smith         if (rp[i] > col) break;
987af674e45SBarry Smith         if (rp[i] == col) {
988af674e45SBarry Smith           bap  = ap +  16*i;
989af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
990af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
991af674e45SBarry Smith               bap[jj] += *value++;
992af674e45SBarry Smith             }
993af674e45SBarry Smith           }
994af674e45SBarry Smith           goto noinsert2;
995af674e45SBarry Smith         }
996af674e45SBarry Smith       }
997af674e45SBarry Smith       N = nrow++ - 1;
99817ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
999af674e45SBarry Smith       /* shift up all the later entries in this row */
1000af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1001af674e45SBarry Smith         rp[ii+1] = rp[ii];
1002a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1003af674e45SBarry Smith       }
1004af674e45SBarry Smith       if (N >= i) {
1005a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1006af674e45SBarry Smith       }
1007af674e45SBarry Smith       rp[i] = col;
1008af674e45SBarry Smith       bap   = ap +  16*i;
1009af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
1010af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
1011af674e45SBarry Smith           bap[jj] = *value++;
1012af674e45SBarry Smith         }
1013af674e45SBarry Smith       }
1014af674e45SBarry Smith       noinsert2:;
1015af674e45SBarry Smith       low = i;
1016af674e45SBarry Smith     }
1017af674e45SBarry Smith     ailen[row] = nrow;
1018af674e45SBarry Smith   }
1019be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1020af674e45SBarry Smith }
10219c8c1041SBarry Smith EXTERN_C_END
1022af674e45SBarry Smith 
1023af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1024af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
1025af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1026af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
1027af674e45SBarry Smith #endif
1028af674e45SBarry Smith 
10299c8c1041SBarry Smith EXTERN_C_BEGIN
1030af674e45SBarry Smith #undef __FUNCT__
1031af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_"
1032be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
1033af674e45SBarry Smith {
1034af674e45SBarry Smith   Mat         A = *AA;
1035af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1036c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm;
1037c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
1038c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
103917ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
1040af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
1041af674e45SBarry Smith 
1042af674e45SBarry Smith   PetscFunctionBegin;
1043af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1044af674e45SBarry Smith     row  = im[k]; brow = row/4;
1045af674e45SBarry Smith     rp   = aj + ai[brow];
1046af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1047af674e45SBarry Smith     nrow = ailen[brow];
1048af674e45SBarry Smith     low  = 0;
104917ec6a02SBarry Smith     high = nrow;
1050af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1051af674e45SBarry Smith       col = in[l]; bcol = col/4;
1052af674e45SBarry Smith       ridx = row % 4; cidx = col % 4;
1053af674e45SBarry Smith       value = v[l + k*n];
105417ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
105517ec6a02SBarry Smith       lastcol = col;
1056af674e45SBarry Smith       while (high-low > 7) {
1057af674e45SBarry Smith         t = (low+high)/2;
1058af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1059af674e45SBarry Smith         else              low  = t;
1060af674e45SBarry Smith       }
1061af674e45SBarry Smith       for (i=low; i<high; i++) {
1062af674e45SBarry Smith         if (rp[i] > bcol) break;
1063af674e45SBarry Smith         if (rp[i] == bcol) {
1064af674e45SBarry Smith           bap  = ap +  16*i + 4*cidx + ridx;
1065af674e45SBarry Smith           *bap += value;
1066af674e45SBarry Smith           goto noinsert1;
1067af674e45SBarry Smith         }
1068af674e45SBarry Smith       }
1069af674e45SBarry Smith       N = nrow++ - 1;
107017ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1071af674e45SBarry Smith       /* shift up all the later entries in this row */
1072af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1073af674e45SBarry Smith         rp[ii+1] = rp[ii];
1074a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1075af674e45SBarry Smith       }
1076af674e45SBarry Smith       if (N>=i) {
1077a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1078af674e45SBarry Smith       }
1079af674e45SBarry Smith       rp[i]                    = bcol;
1080af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1081af674e45SBarry Smith       noinsert1:;
1082af674e45SBarry Smith       low = i;
1083af674e45SBarry Smith     }
1084af674e45SBarry Smith     ailen[brow] = nrow;
1085af674e45SBarry Smith   }
1086be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1087af674e45SBarry Smith }
10889c8c1041SBarry Smith EXTERN_C_END
1089af674e45SBarry Smith 
1090be5855fcSBarry Smith /*
1091be5855fcSBarry Smith      Checks for missing diagonals
1092be5855fcSBarry Smith */
10934a2ae208SSatish Balay #undef __FUNCT__
10944a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ"
10952af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d)
1096be5855fcSBarry Smith {
1097be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10986849ba73SBarry Smith   PetscErrorCode ierr;
1099c1ac3661SBarry Smith   PetscInt       *diag,*jj = a->j,i;
1100be5855fcSBarry Smith 
1101be5855fcSBarry Smith   PetscFunctionBegin;
1102c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
11032af78befSBarry Smith   *missing = PETSC_FALSE;
1104883fce79SBarry Smith   diag     = a->diag;
11050e8e8aceSBarry Smith   for (i=0; i<a->mbs; i++) {
1106be5855fcSBarry Smith     if (jj[diag[i]] != i) {
11072af78befSBarry Smith       *missing  = PETSC_TRUE;
11082af78befSBarry Smith       if (d) *d = i;
1109be5855fcSBarry Smith     }
1110be5855fcSBarry Smith   }
1111be5855fcSBarry Smith   PetscFunctionReturn(0);
1112be5855fcSBarry Smith }
1113be5855fcSBarry Smith 
11144a2ae208SSatish Balay #undef __FUNCT__
11154a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ"
1116dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1117de6a44a3SBarry Smith {
1118de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11196849ba73SBarry Smith   PetscErrorCode ierr;
112009f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1121de6a44a3SBarry Smith 
11223a40ed3dSBarry Smith   PetscFunctionBegin;
112309f38230SBarry Smith   if (!a->diag) {
112409f38230SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
112509f38230SBarry Smith   }
11267fc0212eSBarry Smith   for (i=0; i<m; i++) {
112709f38230SBarry Smith     a->diag[i] = a->i[i+1];
1128de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1129de6a44a3SBarry Smith       if (a->j[j] == i) {
113009f38230SBarry Smith         a->diag[i] = j;
1131de6a44a3SBarry Smith         break;
1132de6a44a3SBarry Smith       }
1133de6a44a3SBarry Smith     }
1134de6a44a3SBarry Smith   }
11353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1136de6a44a3SBarry Smith }
11372593348eSBarry Smith 
11382593348eSBarry Smith 
1139690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**);
11403b2fbd54SBarry Smith 
11414a2ae208SSatish Balay #undef __FUNCT__
11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ"
11438f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
11443b2fbd54SBarry Smith {
11453b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1146dfbe8321SBarry Smith   PetscErrorCode ierr;
11479985e31cSBarry Smith   PetscInt       i,j,n = a->mbs,nz = a->i[n],bs = A->rmap.bs,nbs = 1,k,l,cnt;
11488f7157efSSatish Balay   PetscInt       *tia, *tja;
11493b2fbd54SBarry Smith 
11503a40ed3dSBarry Smith   PetscFunctionBegin;
11513b2fbd54SBarry Smith   *nn = n;
11523a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
11533b2fbd54SBarry Smith   if (symmetric) {
11548f7157efSSatish Balay     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr);
11553b2fbd54SBarry Smith   } else {
11568f7157efSSatish Balay     tia = a->i; tja = a->j;
11573b2fbd54SBarry Smith   }
11583b2fbd54SBarry Smith 
1159ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1160ecc77c7aSBarry Smith     (*nn) *= bs;
1161ecc77c7aSBarry Smith     nbs    = bs;
11628f7157efSSatish Balay     /* malloc & create the natural set of indices */
1163ecc77c7aSBarry Smith     ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr);
11649985e31cSBarry Smith     if (n) {
1165ecc77c7aSBarry Smith       (*ia)[0] = 0;
1166ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1167ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1168ecc77c7aSBarry Smith       }
11699985e31cSBarry Smith     }
1170ecc77c7aSBarry Smith 
1171ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1172ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1173ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1174ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
11758f7157efSSatish Balay       }
11768f7157efSSatish Balay     }
11779985e31cSBarry Smith     if (n) {
1178ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
11799985e31cSBarry Smith     }
1180ecc77c7aSBarry Smith 
11819985e31cSBarry Smith     if (ja) {
11829985e31cSBarry Smith       ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr);
11839985e31cSBarry Smith       cnt = 0;
11849985e31cSBarry Smith       for (i=0; i<n; i++) {
11859985e31cSBarry Smith         for (j=0; j<bs; j++) {
11869985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
11879985e31cSBarry Smith             for (l=0; l<bs; l++) {
11889985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
11899985e31cSBarry Smith 	    }
11909985e31cSBarry Smith           }
11919985e31cSBarry Smith         }
11929985e31cSBarry Smith       }
11939985e31cSBarry Smith     }
11949985e31cSBarry Smith 
1195ecc77c7aSBarry Smith     n     *= bs;
1196ecc77c7aSBarry Smith     nz *= bs*bs;
11978f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
11988f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
11998f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
12008f7157efSSatish Balay     }
12018f7157efSSatish Balay   } else {
12028f7157efSSatish Balay     *ia = tia;
1203ecc77c7aSBarry Smith     if (ja) *ja = tja;
12048f7157efSSatish Balay   }
12058f7157efSSatish Balay   if (oshift == 1) {
1206ecc77c7aSBarry Smith     for (i=0; i<n+nbs; i++) (*ia)[i]++;
1207ecc77c7aSBarry Smith     if (ja) for (i=0; i<nz; i++) (*ja)[i]++;
12088f7157efSSatish Balay   }
12093a40ed3dSBarry Smith   PetscFunctionReturn(0);
12103b2fbd54SBarry Smith }
12113b2fbd54SBarry Smith 
12124a2ae208SSatish Balay #undef __FUNCT__
12134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ"
12148f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
12153b2fbd54SBarry Smith {
12163b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
12176849ba73SBarry Smith   PetscErrorCode ierr;
12188f7157efSSatish Balay   PetscInt       i,n = a->mbs,nz = a->i[n];
12193b2fbd54SBarry Smith 
12203a40ed3dSBarry Smith   PetscFunctionBegin;
12213a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1222ecc77c7aSBarry Smith   if (!blockcompressed && A->rmap.bs > 1) {
1223ecc77c7aSBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
12249985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12258f7157efSSatish Balay   } else if (symmetric) {
1226606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
12279985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12288f7157efSSatish Balay   } else if (oshift == 1) { /* blockcompressed */
12293b2fbd54SBarry Smith     for (i=0; i<n+1; i++) a->i[i]--;
12309985e31cSBarry Smith     if (ja) {for (i=0; i<nz; i++) a->j[i]--;}
12313b2fbd54SBarry Smith   }
12323a40ed3dSBarry Smith   PetscFunctionReturn(0);
12333b2fbd54SBarry Smith }
12343b2fbd54SBarry Smith 
12354a2ae208SSatish Balay #undef __FUNCT__
12364a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ"
1237dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
12382d61bbb3SSatish Balay {
12392d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1240dfbe8321SBarry Smith   PetscErrorCode ierr;
12412d61bbb3SSatish Balay 
1242433994e6SBarry Smith   PetscFunctionBegin;
1243aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1244899cda47SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap.N,A->cmap.n,a->nz);
12452d61bbb3SSatish Balay #endif
1246e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
1247c38d4ed2SBarry Smith   if (a->row) {
1248c38d4ed2SBarry Smith     ierr = ISDestroy(a->row);CHKERRQ(ierr);
1249c38d4ed2SBarry Smith   }
1250c38d4ed2SBarry Smith   if (a->col) {
1251c38d4ed2SBarry Smith     ierr = ISDestroy(a->col);CHKERRQ(ierr);
1252c38d4ed2SBarry Smith   }
125305b42c5fSBarry Smith   ierr = PetscFree(a->diag);CHKERRQ(ierr);
125405b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
125505b42c5fSBarry Smith   ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);
125605b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
125705b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1258e51c0b9cSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
125905b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
126005b42c5fSBarry Smith   ierr = PetscFree(a->xtoy);CHKERRQ(ierr);
126173e7a558SHong Zhang   if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);}
1262c4319e64SHong Zhang 
1263606d414cSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
1264901853e0SKris Buschelman 
1265dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
126643516a2dSKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr);
1267901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1268901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1269901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
1270901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
1271901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr);
1272901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
12732d61bbb3SSatish Balay   PetscFunctionReturn(0);
12742d61bbb3SSatish Balay }
12752d61bbb3SSatish Balay 
12764a2ae208SSatish Balay #undef __FUNCT__
12774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ"
12784e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg)
12792d61bbb3SSatish Balay {
12802d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
128163ba0a88SBarry Smith   PetscErrorCode ierr;
12822d61bbb3SSatish Balay 
12832d61bbb3SSatish Balay   PetscFunctionBegin;
1284aa275fccSKris Buschelman   switch (op) {
1285aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
12864e0d8c25SBarry Smith     a->roworiented    = flg;
1287aa275fccSKris Buschelman     break;
1288aa275fccSKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
12894e0d8c25SBarry Smith     a->keepzeroedrows = flg;
1290aa275fccSKris Buschelman     break;
1291512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1292512a5fc5SBarry Smith     a->nonew          = (flg ? 0 : 1);
1293aa275fccSKris Buschelman     break;
1294aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12954e0d8c25SBarry Smith     a->nonew          = (flg ? -1 : 0);
1296aa275fccSKris Buschelman     break;
1297aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
12984e0d8c25SBarry Smith     a->nonew          = (flg ? -2 : 0);
1299aa275fccSKris Buschelman     break;
13004e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1301aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1302aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1303290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1304aa275fccSKris Buschelman     break;
130577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
130677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13079a4540c5SBarry Smith   case MAT_HERMITIAN:
13089a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1309290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
131077e54ba9SKris Buschelman     break;
1311aa275fccSKris Buschelman   default:
1312ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
13132d61bbb3SSatish Balay   }
13142d61bbb3SSatish Balay   PetscFunctionReturn(0);
13152d61bbb3SSatish Balay }
13162d61bbb3SSatish Balay 
13174a2ae208SSatish Balay #undef __FUNCT__
13184a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ"
1319c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13202d61bbb3SSatish Balay {
13212d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
13226849ba73SBarry Smith   PetscErrorCode ierr;
1323c1ac3661SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
13243f1db9ecSBarry Smith   MatScalar      *aa,*aa_i;
132587828ca2SBarry Smith   PetscScalar    *v_i;
13262d61bbb3SSatish Balay 
13272d61bbb3SSatish Balay   PetscFunctionBegin;
1328899cda47SBarry Smith   bs  = A->rmap.bs;
13292d61bbb3SSatish Balay   ai  = a->i;
13302d61bbb3SSatish Balay   aj  = a->j;
13312d61bbb3SSatish Balay   aa  = a->a;
13322d61bbb3SSatish Balay   bs2 = a->bs2;
13332d61bbb3SSatish Balay 
1334899cda47SBarry Smith   if (row < 0 || row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
13352d61bbb3SSatish Balay 
13362d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
13372d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
13382d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
13392d61bbb3SSatish Balay   *nz = bs*M;
13402d61bbb3SSatish Balay 
13412d61bbb3SSatish Balay   if (v) {
13422d61bbb3SSatish Balay     *v = 0;
13432d61bbb3SSatish Balay     if (*nz) {
134487828ca2SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr);
13452d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13462d61bbb3SSatish Balay         v_i  = *v + i*bs;
13472d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
13482d61bbb3SSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
13492d61bbb3SSatish Balay       }
13502d61bbb3SSatish Balay     }
13512d61bbb3SSatish Balay   }
13522d61bbb3SSatish Balay 
13532d61bbb3SSatish Balay   if (idx) {
13542d61bbb3SSatish Balay     *idx = 0;
13552d61bbb3SSatish Balay     if (*nz) {
1356c1ac3661SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr);
13572d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13582d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13592d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
13602d61bbb3SSatish Balay         for (j=0; j<bs; j++) {idx_i[j] = itmp++;}
13612d61bbb3SSatish Balay       }
13622d61bbb3SSatish Balay     }
13632d61bbb3SSatish Balay   }
13642d61bbb3SSatish Balay   PetscFunctionReturn(0);
13652d61bbb3SSatish Balay }
13662d61bbb3SSatish Balay 
13674a2ae208SSatish Balay #undef __FUNCT__
13684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ"
1369c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13702d61bbb3SSatish Balay {
1371dfbe8321SBarry Smith   PetscErrorCode ierr;
1372606d414cSSatish Balay 
13732d61bbb3SSatish Balay   PetscFunctionBegin;
137405b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
137505b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
13762d61bbb3SSatish Balay   PetscFunctionReturn(0);
13772d61bbb3SSatish Balay }
13782d61bbb3SSatish Balay 
13794a2ae208SSatish Balay #undef __FUNCT__
13804a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ"
1381fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
13822d61bbb3SSatish Balay {
13832d61bbb3SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data;
13842d61bbb3SSatish Balay   Mat            C;
13856849ba73SBarry Smith   PetscErrorCode ierr;
1386899cda47SBarry Smith   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap.bs,mbs=a->mbs,nbs=a->nbs,len,*col;
1387c1ac3661SBarry Smith   PetscInt       *rows,*cols,bs2=a->bs2;
1388dd6ea824SBarry Smith   MatScalar      *array;
13892d61bbb3SSatish Balay 
13902d61bbb3SSatish Balay   PetscFunctionBegin;
1391e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1392fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *B) {
1393c1ac3661SBarry Smith     ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr);
1394c1ac3661SBarry Smith     ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr);
13952d61bbb3SSatish Balay 
13962d61bbb3SSatish Balay     for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1;
13977adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr);
1398899cda47SBarry Smith     ierr = MatSetSizes(C,A->cmap.n,A->rmap.N,A->cmap.n,A->rmap.N);CHKERRQ(ierr);
13997adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
1400ab93d7beSBarry Smith     ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr);
1401606d414cSSatish Balay     ierr = PetscFree(col);CHKERRQ(ierr);
1402fc4dec0aSBarry Smith   } else {
1403fc4dec0aSBarry Smith     C = *B;
1404fc4dec0aSBarry Smith   }
1405fc4dec0aSBarry Smith 
1406fc4dec0aSBarry Smith   array = a->a;
1407c1ac3661SBarry Smith   ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr);
14082d61bbb3SSatish Balay   cols = rows + bs;
14092d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
14102d61bbb3SSatish Balay     cols[0] = i*bs;
14112d61bbb3SSatish Balay     for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1;
14122d61bbb3SSatish Balay     len = ai[i+1] - ai[i];
14132d61bbb3SSatish Balay     for (j=0; j<len; j++) {
14142d61bbb3SSatish Balay       rows[0] = (*aj++)*bs;
14152d61bbb3SSatish Balay       for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1;
14162d61bbb3SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr);
14172d61bbb3SSatish Balay       array += bs2;
14182d61bbb3SSatish Balay     }
14192d61bbb3SSatish Balay   }
1420606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
14212d61bbb3SSatish Balay 
14222d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14232d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14242d61bbb3SSatish Balay 
1425815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
14262d61bbb3SSatish Balay     *B = C;
14272d61bbb3SSatish Balay   } else {
1428273d9f13SBarry Smith     ierr = MatHeaderCopy(A,C);CHKERRQ(ierr);
14292d61bbb3SSatish Balay   }
14302d61bbb3SSatish Balay   PetscFunctionReturn(0);
14312d61bbb3SSatish Balay }
14322d61bbb3SSatish Balay 
14334a2ae208SSatish Balay #undef __FUNCT__
14344a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary"
14356849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
14362593348eSBarry Smith {
1437b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14386849ba73SBarry Smith   PetscErrorCode ierr;
1439899cda47SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap.bs,count,*jj,j,k,l,bs2=a->bs2;
1440b24ad042SBarry Smith   int            fd;
144187828ca2SBarry Smith   PetscScalar    *aa;
1442ce6f0cecSBarry Smith   FILE           *file;
14432593348eSBarry Smith 
14443a40ed3dSBarry Smith   PetscFunctionBegin;
1445b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1446899cda47SBarry Smith   ierr        = PetscMalloc((4+A->rmap.N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
1447552e946dSBarry Smith   col_lens[0] = MAT_FILE_COOKIE;
14483b2fbd54SBarry Smith 
1449899cda47SBarry Smith   col_lens[1] = A->rmap.N;
1450899cda47SBarry Smith   col_lens[2] = A->cmap.n;
14517e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
14522593348eSBarry Smith 
14532593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1454b6490206SBarry Smith   count = 0;
1455b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1456b6490206SBarry Smith     for (j=0; j<bs; j++) {
1457b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1458b6490206SBarry Smith     }
14592593348eSBarry Smith   }
1460899cda47SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap.N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1461606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
14622593348eSBarry Smith 
14632593348eSBarry Smith   /* store column indices (zero start index) */
1464c1ac3661SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr);
1465b6490206SBarry Smith   count = 0;
1466b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1467b6490206SBarry Smith     for (j=0; j<bs; j++) {
1468b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1469b6490206SBarry Smith         for (l=0; l<bs; l++) {
1470b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
14712593348eSBarry Smith         }
14722593348eSBarry Smith       }
1473b6490206SBarry Smith     }
1474b6490206SBarry Smith   }
14756f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1476606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
14772593348eSBarry Smith 
14782593348eSBarry Smith   /* store nonzero values */
147987828ca2SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
1480b6490206SBarry Smith   count = 0;
1481b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1482b6490206SBarry Smith     for (j=0; j<bs; j++) {
1483b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1484b6490206SBarry Smith         for (l=0; l<bs; l++) {
14857e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1486b6490206SBarry Smith         }
1487b6490206SBarry Smith       }
1488b6490206SBarry Smith     }
1489b6490206SBarry Smith   }
14906f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1491606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1492ce6f0cecSBarry Smith 
1493b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1494ce6f0cecSBarry Smith   if (file) {
1495899cda47SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap.bs);
1496ce6f0cecSBarry Smith   }
14973a40ed3dSBarry Smith   PetscFunctionReturn(0);
14982593348eSBarry Smith }
14992593348eSBarry Smith 
15004a2ae208SSatish Balay #undef __FUNCT__
15014a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII"
15026849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
15032593348eSBarry Smith {
1504b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1505dfbe8321SBarry Smith   PetscErrorCode    ierr;
1506899cda47SBarry Smith   PetscInt          i,j,bs = A->rmap.bs,k,l,bs2=a->bs2;
1507f3ef73ceSBarry Smith   PetscViewerFormat format;
15082593348eSBarry Smith 
15093a40ed3dSBarry Smith   PetscFunctionBegin;
1510b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1511456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
151277431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1513fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1514bcd9e38bSBarry Smith     Mat aij;
1515ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1516bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
1517bcd9e38bSBarry Smith     ierr = MatDestroy(aij);CHKERRQ(ierr);
151804929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
151904929863SHong Zhang      PetscFunctionReturn(0);
1520fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1521b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
152244cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
152344cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
152477431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
152544cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
152644cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1527aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15280e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1529a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l,
15300e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15310e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1532a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l,
15330e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15340e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1535a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15360ef38995SBarry Smith             }
153744cd7ae7SLois Curfman McInnes #else
15380ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
1539a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
15400ef38995SBarry Smith             }
154144cd7ae7SLois Curfman McInnes #endif
154244cd7ae7SLois Curfman McInnes           }
154344cd7ae7SLois Curfman McInnes         }
1544b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
154544cd7ae7SLois Curfman McInnes       }
154644cd7ae7SLois Curfman McInnes     }
1547b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
15480ef38995SBarry Smith   } else {
1549b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
1550b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1551b6490206SBarry Smith       for (j=0; j<bs; j++) {
155277431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1553b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1554b6490206SBarry Smith           for (l=0; l<bs; l++) {
1555aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15560e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
1557a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
15580e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15590e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
1560a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
15610e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15620ef38995SBarry Smith             } else {
1563a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
156488685aaeSLois Curfman McInnes             }
156588685aaeSLois Curfman McInnes #else
1566a83599f4SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
156788685aaeSLois Curfman McInnes #endif
15682593348eSBarry Smith           }
15692593348eSBarry Smith         }
1570b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
15712593348eSBarry Smith       }
15722593348eSBarry Smith     }
1573b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
1574b6490206SBarry Smith   }
1575b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15763a40ed3dSBarry Smith   PetscFunctionReturn(0);
15772593348eSBarry Smith }
15782593348eSBarry Smith 
15794a2ae208SSatish Balay #undef __FUNCT__
15804a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom"
15816849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
15823270192aSSatish Balay {
158377ed5343SBarry Smith   Mat            A = (Mat) Aa;
15843270192aSSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data;
15856849ba73SBarry Smith   PetscErrorCode ierr;
1586899cda47SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap.bs,bs2=a->bs2;
15870e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
15883f1db9ecSBarry Smith   MatScalar      *aa;
1589b0a32e0cSBarry Smith   PetscViewer    viewer;
15903270192aSSatish Balay 
15913a40ed3dSBarry Smith   PetscFunctionBegin;
15923270192aSSatish Balay 
1593b65db4caSBarry Smith   /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/
159477ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
159577ed5343SBarry Smith 
1596b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
159777ed5343SBarry Smith 
15983270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1599b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
16003270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16013270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1602899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
16033270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16043270192aSSatish Balay       aa = a->a + j*bs2;
16053270192aSSatish Balay       for (k=0; k<bs; k++) {
16063270192aSSatish Balay         for (l=0; l<bs; l++) {
16070e6d2581SBarry Smith           if (PetscRealPart(*aa++) >=  0.) continue;
1608b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16093270192aSSatish Balay         }
16103270192aSSatish Balay       }
16113270192aSSatish Balay     }
16123270192aSSatish Balay   }
1613b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
16143270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16153270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1616899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
16173270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16183270192aSSatish Balay       aa = a->a + j*bs2;
16193270192aSSatish Balay       for (k=0; k<bs; k++) {
16203270192aSSatish Balay         for (l=0; l<bs; l++) {
16210e6d2581SBarry Smith           if (PetscRealPart(*aa++) != 0.) continue;
1622b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16233270192aSSatish Balay         }
16243270192aSSatish Balay       }
16253270192aSSatish Balay     }
16263270192aSSatish Balay   }
16273270192aSSatish Balay 
1628b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
16293270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16303270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1631899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
16323270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16333270192aSSatish Balay       aa = a->a + j*bs2;
16343270192aSSatish Balay       for (k=0; k<bs; k++) {
16353270192aSSatish Balay         for (l=0; l<bs; l++) {
16360e6d2581SBarry Smith           if (PetscRealPart(*aa++) <= 0.) continue;
1637b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16383270192aSSatish Balay         }
16393270192aSSatish Balay       }
16403270192aSSatish Balay     }
16413270192aSSatish Balay   }
164277ed5343SBarry Smith   PetscFunctionReturn(0);
164377ed5343SBarry Smith }
16443270192aSSatish Balay 
16454a2ae208SSatish Balay #undef __FUNCT__
16464a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw"
16476849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
164877ed5343SBarry Smith {
1649dfbe8321SBarry Smith   PetscErrorCode ierr;
16500e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1651b0a32e0cSBarry Smith   PetscDraw      draw;
165277ed5343SBarry Smith   PetscTruth     isnull;
16533270192aSSatish Balay 
165477ed5343SBarry Smith   PetscFunctionBegin;
165577ed5343SBarry Smith 
1656b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1657b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
165877ed5343SBarry Smith 
165977ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1660899cda47SBarry Smith   xr  = A->cmap.n; yr = A->rmap.N; h = yr/10.0; w = xr/10.0;
166177ed5343SBarry Smith   xr += w;    yr += h;  xl = -w;     yl = -h;
1662b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1663b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
166477ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
16653a40ed3dSBarry Smith   PetscFunctionReturn(0);
16663270192aSSatish Balay }
16673270192aSSatish Balay 
16684a2ae208SSatish Balay #undef __FUNCT__
16694a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ"
1670dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
16712593348eSBarry Smith {
1672dfbe8321SBarry Smith   PetscErrorCode ierr;
167332077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw;
16742593348eSBarry Smith 
16753a40ed3dSBarry Smith   PetscFunctionBegin;
167632077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1677fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1678fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
167932077d6dSBarry Smith   if (iascii){
16803a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
16810f5bd95cSBarry Smith   } else if (isbinary) {
16823a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
16830f5bd95cSBarry Smith   } else if (isdraw) {
16843a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
16855cd90555SBarry Smith   } else {
1686a5e6ed63SBarry Smith     Mat B;
1687ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1688a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
1689a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
16902593348eSBarry Smith   }
16913a40ed3dSBarry Smith   PetscFunctionReturn(0);
16922593348eSBarry Smith }
1693b6490206SBarry Smith 
1694cd0e1443SSatish Balay 
16954a2ae208SSatish Balay #undef __FUNCT__
16964a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ"
1697c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1698cd0e1443SSatish Balay {
1699cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1700c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1701c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1702899cda47SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap.bs,bs2=a->bs2;
170397e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1704cd0e1443SSatish Balay 
17053a40ed3dSBarry Smith   PetscFunctionBegin;
17062d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1707cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
170897e567efSBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1709899cda47SBarry Smith     if (row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
17102d61bbb3SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
17112c3acbe9SBarry Smith     nrow = ailen[brow];
17122d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
171397e567efSBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1714899cda47SBarry Smith       if (in[l] >= A->cmap.n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
17152d61bbb3SSatish Balay       col  = in[l] ;
17162d61bbb3SSatish Balay       bcol = col/bs;
17172d61bbb3SSatish Balay       cidx = col%bs;
17182d61bbb3SSatish Balay       ridx = row%bs;
17192d61bbb3SSatish Balay       high = nrow;
17202d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17212d61bbb3SSatish Balay       while (high-low > 5) {
1722cd0e1443SSatish Balay         t = (low+high)/2;
1723cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1724cd0e1443SSatish Balay         else             low  = t;
1725cd0e1443SSatish Balay       }
1726cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1727cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1728cd0e1443SSatish Balay         if (rp[i] == bcol) {
17292d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17302d61bbb3SSatish Balay           goto finished;
1731cd0e1443SSatish Balay         }
1732cd0e1443SSatish Balay       }
173397e567efSBarry Smith       *v++ = 0.0;
17342d61bbb3SSatish Balay       finished:;
1735cd0e1443SSatish Balay     }
1736cd0e1443SSatish Balay   }
17373a40ed3dSBarry Smith   PetscFunctionReturn(0);
1738cd0e1443SSatish Balay }
1739cd0e1443SSatish Balay 
174097e5c40aSBarry Smith #define CHUNKSIZE 10
17414a2ae208SSatish Balay #undef __FUNCT__
17424a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ"
1743dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
174492c4ed94SBarry Smith {
174592c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1746e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1747c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
17486849ba73SBarry Smith   PetscErrorCode    ierr;
1749899cda47SBarry Smith   PetscInt          *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap.bs,stepval;
1750273d9f13SBarry Smith   PetscTruth        roworiented=a->roworiented;
1751dd6ea824SBarry Smith   const PetscScalar *value = v;
1752f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
175392c4ed94SBarry Smith 
17543a40ed3dSBarry Smith   PetscFunctionBegin;
17550e324ae4SSatish Balay   if (roworiented) {
17560e324ae4SSatish Balay     stepval = (n-1)*bs;
17570e324ae4SSatish Balay   } else {
17580e324ae4SSatish Balay     stepval = (m-1)*bs;
17590e324ae4SSatish Balay   }
176092c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
176192c4ed94SBarry Smith     row  = im[k];
17625ef9f2a5SBarry Smith     if (row < 0) continue;
17632515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
176477431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
176592c4ed94SBarry Smith #endif
176692c4ed94SBarry Smith     rp   = aj + ai[row];
176792c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
176892c4ed94SBarry Smith     rmax = imax[row];
176992c4ed94SBarry Smith     nrow = ailen[row];
177092c4ed94SBarry Smith     low  = 0;
1771c71e6ed7SBarry Smith     high = nrow;
177292c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
17735ef9f2a5SBarry Smith       if (in[l] < 0) continue;
17742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
177577431f27SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1);
177692c4ed94SBarry Smith #endif
177792c4ed94SBarry Smith       col = in[l];
177892c4ed94SBarry Smith       if (roworiented) {
17790e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
17800e324ae4SSatish Balay       } else {
17810e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
178292c4ed94SBarry Smith       }
17837cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
1784e2ee6c50SBarry Smith       lastcol = col;
178592c4ed94SBarry Smith       while (high-low > 7) {
178692c4ed94SBarry Smith         t = (low+high)/2;
178792c4ed94SBarry Smith         if (rp[t] > col) high = t;
178892c4ed94SBarry Smith         else             low  = t;
178992c4ed94SBarry Smith       }
179092c4ed94SBarry Smith       for (i=low; i<high; i++) {
179192c4ed94SBarry Smith         if (rp[i] > col) break;
179292c4ed94SBarry Smith         if (rp[i] == col) {
17938a84c255SSatish Balay           bap  = ap +  bs2*i;
17940e324ae4SSatish Balay           if (roworiented) {
17958a84c255SSatish Balay             if (is == ADD_VALUES) {
1796dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1797dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
17988a84c255SSatish Balay                   bap[jj] += *value++;
1799dd9472c6SBarry Smith                 }
1800dd9472c6SBarry Smith               }
18010e324ae4SSatish Balay             } else {
1802dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1803dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18040e324ae4SSatish Balay                   bap[jj] = *value++;
18058a84c255SSatish Balay                 }
1806dd9472c6SBarry Smith               }
1807dd9472c6SBarry Smith             }
18080e324ae4SSatish Balay           } else {
18090e324ae4SSatish Balay             if (is == ADD_VALUES) {
1810dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1811dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18120e324ae4SSatish Balay                   *bap++ += *value++;
1813dd9472c6SBarry Smith                 }
1814dd9472c6SBarry Smith               }
18150e324ae4SSatish Balay             } else {
1816dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1817dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18180e324ae4SSatish Balay                   *bap++  = *value++;
18190e324ae4SSatish Balay                 }
18208a84c255SSatish Balay               }
1821dd9472c6SBarry Smith             }
1822dd9472c6SBarry Smith           }
1823f1241b54SBarry Smith           goto noinsert2;
182492c4ed94SBarry Smith         }
182592c4ed94SBarry Smith       }
182689280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
1827085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1828421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
1829c03d1d03SSatish Balay       N = nrow++ - 1; high++;
183092c4ed94SBarry Smith       /* shift up all the later entries in this row */
183192c4ed94SBarry Smith       for (ii=N; ii>=i; ii--) {
183292c4ed94SBarry Smith         rp[ii+1] = rp[ii];
1833549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
183492c4ed94SBarry Smith       }
1835549d3d68SSatish Balay       if (N >= i) {
1836549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1837549d3d68SSatish Balay       }
183892c4ed94SBarry Smith       rp[i] = col;
18398a84c255SSatish Balay       bap   = ap +  bs2*i;
18400e324ae4SSatish Balay       if (roworiented) {
1841dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1842dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs) {
18430e324ae4SSatish Balay             bap[jj] = *value++;
1844dd9472c6SBarry Smith           }
1845dd9472c6SBarry Smith         }
18460e324ae4SSatish Balay       } else {
1847dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1848dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++) {
18490e324ae4SSatish Balay             *bap++  = *value++;
18500e324ae4SSatish Balay           }
1851dd9472c6SBarry Smith         }
1852dd9472c6SBarry Smith       }
1853f1241b54SBarry Smith       noinsert2:;
185492c4ed94SBarry Smith       low = i;
185592c4ed94SBarry Smith     }
185692c4ed94SBarry Smith     ailen[row] = nrow;
185792c4ed94SBarry Smith   }
18583a40ed3dSBarry Smith   PetscFunctionReturn(0);
185992c4ed94SBarry Smith }
186026e093fcSHong Zhang 
18614a2ae208SSatish Balay #undef __FUNCT__
18624a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ"
1863dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1864584200bdSSatish Balay {
1865584200bdSSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1866c1ac3661SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
1867899cda47SBarry Smith   PetscInt       m = A->rmap.N,*ip,N,*ailen = a->ilen;
18686849ba73SBarry Smith   PetscErrorCode ierr;
1869c1ac3661SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
18703f1db9ecSBarry Smith   MatScalar      *aa = a->a,*ap;
18713447b6efSHong Zhang   PetscReal      ratio=0.6;
1872584200bdSSatish Balay 
18733a40ed3dSBarry Smith   PetscFunctionBegin;
18743a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1875584200bdSSatish Balay 
187643ee02c3SBarry Smith   if (m) rmax = ailen[0];
1877584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1878584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1879584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1880d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
1881584200bdSSatish Balay     if (fshift) {
1882a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
1883584200bdSSatish Balay       N = ailen[i];
1884584200bdSSatish Balay       for (j=0; j<N; j++) {
1885584200bdSSatish Balay         ip[j-fshift] = ip[j];
1886549d3d68SSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1887584200bdSSatish Balay       }
1888584200bdSSatish Balay     }
1889584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1890584200bdSSatish Balay   }
1891584200bdSSatish Balay   if (mbs) {
1892584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1893584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1894584200bdSSatish Balay   }
1895584200bdSSatish Balay   /* reset ilen and imax for each row */
1896584200bdSSatish Balay   for (i=0; i<mbs; i++) {
1897584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
1898584200bdSSatish Balay   }
1899a7c10996SSatish Balay   a->nz = ai[mbs];
1900584200bdSSatish Balay 
1901584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1902b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1903584200bdSSatish Balay   if (fshift && a->diag) {
1904606d414cSSatish Balay     ierr = PetscFree(a->diag);CHKERRQ(ierr);
190552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1906584200bdSSatish Balay     a->diag = 0;
1907584200bdSSatish Balay   }
1908899cda47SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap.n,A->rmap.bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
1909ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
1910ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
1911e2f3b5e9SSatish Balay   a->reallocs          = 0;
19120e6d2581SBarry Smith   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
1913cf4441caSHong Zhang 
1914cb5d8e9eSHong Zhang   /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */
19152f53aa61SHong Zhang   if (a->compressedrow.use){
1916317fbc4cSHong Zhang     ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
191773e7a558SHong Zhang   }
191888e51ccdSHong Zhang 
191988e51ccdSHong Zhang   A->same_nonzero = PETSC_TRUE;
19203a40ed3dSBarry Smith   PetscFunctionReturn(0);
1921584200bdSSatish Balay }
1922584200bdSSatish Balay 
1923bea157c4SSatish Balay /*
1924bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1925bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1926bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
1927bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
1928bea157c4SSatish Balay */
19294a2ae208SSatish Balay #undef __FUNCT__
19304a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks"
1931c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
1932d9b7c43dSSatish Balay {
1933c1ac3661SBarry Smith   PetscInt   i,j,k,row;
1934bea157c4SSatish Balay   PetscTruth flg;
19353a40ed3dSBarry Smith 
1936433994e6SBarry Smith   PetscFunctionBegin;
1937bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
1938bea157c4SSatish Balay     row = idx[i];
1939bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
1940bea157c4SSatish Balay       sizes[j] = 1;
1941bea157c4SSatish Balay       i++;
1942e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
1943bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
1944bea157c4SSatish Balay       i++;
1945bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
1946bea157c4SSatish Balay       flg = PETSC_TRUE;
1947bea157c4SSatish Balay       for (k=1; k<bs; k++) {
1948bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
1949bea157c4SSatish Balay           flg = PETSC_FALSE;
1950bea157c4SSatish Balay           break;
1951d9b7c43dSSatish Balay         }
1952bea157c4SSatish Balay       }
1953abc0a331SBarry Smith       if (flg) { /* No break in the bs */
1954bea157c4SSatish Balay         sizes[j] = bs;
1955bea157c4SSatish Balay         i+= bs;
1956bea157c4SSatish Balay       } else {
1957bea157c4SSatish Balay         sizes[j] = 1;
1958bea157c4SSatish Balay         i++;
1959bea157c4SSatish Balay       }
1960bea157c4SSatish Balay     }
1961bea157c4SSatish Balay   }
1962bea157c4SSatish Balay   *bs_max = j;
19633a40ed3dSBarry Smith   PetscFunctionReturn(0);
1964d9b7c43dSSatish Balay }
1965d9b7c43dSSatish Balay 
19664a2ae208SSatish Balay #undef __FUNCT__
19674a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ"
1968f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag)
1969d9b7c43dSSatish Balay {
1970d9b7c43dSSatish Balay   Mat_SeqBAIJ    *baij=(Mat_SeqBAIJ*)A->data;
1971dfbe8321SBarry Smith   PetscErrorCode ierr;
1972f4df32b1SMatthew Knepley   PetscInt       i,j,k,count,*rows;
1973899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,bs2=baij->bs2,*sizes,row,bs_max;
197487828ca2SBarry Smith   PetscScalar    zero = 0.0;
19753f1db9ecSBarry Smith   MatScalar      *aa;
1976d9b7c43dSSatish Balay 
19773a40ed3dSBarry Smith   PetscFunctionBegin;
1978d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
1979bea157c4SSatish Balay   /* allocate memory for rows,sizes */
1980c1ac3661SBarry Smith   ierr  = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr);
1981bea157c4SSatish Balay   sizes = rows + is_n;
1982bea157c4SSatish Balay 
1983563b5814SBarry Smith   /* copy IS values to rows, and sort them */
1984bea157c4SSatish Balay   for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; }
1985bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
1986dffd3267SBarry Smith   if (baij->keepzeroedrows) {
1987dffd3267SBarry Smith     for (i=0; i<is_n; i++) { sizes[i] = 1; }
1988dffd3267SBarry Smith     bs_max = is_n;
198988e51ccdSHong Zhang     A->same_nonzero = PETSC_TRUE;
1990dffd3267SBarry Smith   } else {
1991bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
199288e51ccdSHong Zhang     A->same_nonzero = PETSC_FALSE;
1993dffd3267SBarry Smith   }
1994bea157c4SSatish Balay 
1995bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
1996bea157c4SSatish Balay     row   = rows[j];
1997899cda47SBarry Smith     if (row < 0 || row > A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
1998bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
1999b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2000dffd3267SBarry Smith     if (sizes[i] == bs && !baij->keepzeroedrows) {
2001f4df32b1SMatthew Knepley       if (diag != 0.0) {
2002bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2003bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2004bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
2005bea157c4SSatish Balay           ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr);
2006a07cd24cSSatish Balay         }
2007563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2008bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2009f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2010bea157c4SSatish Balay         }
2011f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2012bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2013f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2014bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2015aa482453SBarry Smith #if defined (PETSC_USE_DEBUG)
2016634064b4SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2017bea157c4SSatish Balay #endif
2018bea157c4SSatish Balay       for (k=0; k<count; k++) {
2019d9b7c43dSSatish Balay         aa[0] =  zero;
2020d9b7c43dSSatish Balay         aa    += bs;
2021d9b7c43dSSatish Balay       }
2022f4df32b1SMatthew Knepley       if (diag != 0.0) {
2023f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2024d9b7c43dSSatish Balay       }
2025d9b7c43dSSatish Balay     }
2026bea157c4SSatish Balay   }
2027bea157c4SSatish Balay 
2028606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
20299a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20303a40ed3dSBarry Smith   PetscFunctionReturn(0);
2031d9b7c43dSSatish Balay }
20321c351548SSatish Balay 
20334a2ae208SSatish Balay #undef __FUNCT__
20344a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ"
2035c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
20362d61bbb3SSatish Balay {
20372d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2038e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2039c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2040899cda47SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->rmap.bs,brow,bcol;
20416849ba73SBarry Smith   PetscErrorCode ierr;
2042c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2043273d9f13SBarry Smith   PetscTruth     roworiented=a->roworiented;
20443f1db9ecSBarry Smith   MatScalar      *ap,value,*aa=a->a,*bap;
20452d61bbb3SSatish Balay 
20462d61bbb3SSatish Balay   PetscFunctionBegin;
20472d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2048085a36d4SBarry Smith     row  = im[k];
2049085a36d4SBarry Smith     brow = row/bs;
20505ef9f2a5SBarry Smith     if (row < 0) continue;
20512515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2052899cda47SBarry Smith     if (row >= A->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap.N-1);
20532d61bbb3SSatish Balay #endif
20542d61bbb3SSatish Balay     rp   = aj + ai[brow];
20552d61bbb3SSatish Balay     ap   = aa + bs2*ai[brow];
20562d61bbb3SSatish Balay     rmax = imax[brow];
20572d61bbb3SSatish Balay     nrow = ailen[brow];
20582d61bbb3SSatish Balay     low  = 0;
2059c71e6ed7SBarry Smith     high = nrow;
20602d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
20615ef9f2a5SBarry Smith       if (in[l] < 0) continue;
20622515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2063899cda47SBarry Smith       if (in[l] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap.n-1);
20642d61bbb3SSatish Balay #endif
20652d61bbb3SSatish Balay       col = in[l]; bcol = col/bs;
20662d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
20672d61bbb3SSatish Balay       if (roworiented) {
20685ef9f2a5SBarry Smith         value = v[l + k*n];
20692d61bbb3SSatish Balay       } else {
20702d61bbb3SSatish Balay         value = v[k + l*m];
20712d61bbb3SSatish Balay       }
20727cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2073e2ee6c50SBarry Smith       lastcol = col;
20742d61bbb3SSatish Balay       while (high-low > 7) {
20752d61bbb3SSatish Balay         t = (low+high)/2;
20762d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
20772d61bbb3SSatish Balay         else              low  = t;
20782d61bbb3SSatish Balay       }
20792d61bbb3SSatish Balay       for (i=low; i<high; i++) {
20802d61bbb3SSatish Balay         if (rp[i] > bcol) break;
20812d61bbb3SSatish Balay         if (rp[i] == bcol) {
20822d61bbb3SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
20832d61bbb3SSatish Balay           if (is == ADD_VALUES) *bap += value;
20842d61bbb3SSatish Balay           else                  *bap  = value;
20852d61bbb3SSatish Balay           goto noinsert1;
20862d61bbb3SSatish Balay         }
20872d61bbb3SSatish Balay       }
20882d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2089085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2090421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2091c03d1d03SSatish Balay       N = nrow++ - 1; high++;
20922d61bbb3SSatish Balay       /* shift up all the later entries in this row */
20932d61bbb3SSatish Balay       for (ii=N; ii>=i; ii--) {
20942d61bbb3SSatish Balay         rp[ii+1] = rp[ii];
2095549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
20962d61bbb3SSatish Balay       }
2097549d3d68SSatish Balay       if (N>=i) {
2098549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2099549d3d68SSatish Balay       }
21002d61bbb3SSatish Balay       rp[i]                      = bcol;
21012d61bbb3SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
2102085a36d4SBarry Smith       a->nz++;
21032d61bbb3SSatish Balay       noinsert1:;
21042d61bbb3SSatish Balay       low = i;
21052d61bbb3SSatish Balay     }
21062d61bbb3SSatish Balay     ailen[brow] = nrow;
21072d61bbb3SSatish Balay   }
210888e51ccdSHong Zhang   A->same_nonzero = PETSC_FALSE;
21092d61bbb3SSatish Balay   PetscFunctionReturn(0);
21102d61bbb3SSatish Balay }
21112d61bbb3SSatish Balay 
21122d61bbb3SSatish Balay 
21134a2ae208SSatish Balay #undef __FUNCT__
21144a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ"
2115dfbe8321SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,MatFactorInfo *info)
21162d61bbb3SSatish Balay {
21172d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
21182d61bbb3SSatish Balay   Mat            outA;
2119dfbe8321SBarry Smith   PetscErrorCode ierr;
2120667159a5SBarry Smith   PetscTruth     row_identity,col_identity;
21212d61bbb3SSatish Balay 
21222d61bbb3SSatish Balay   PetscFunctionBegin;
2123d3d32019SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2124667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2125667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2126667159a5SBarry Smith   if (!row_identity || !col_identity) {
2127634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
2128667159a5SBarry Smith   }
21292d61bbb3SSatish Balay 
21302d61bbb3SSatish Balay   outA          = inA;
2131*5c9eb25fSBarry Smith   inA->factor   = MAT_FACTOR_LU;
21322d61bbb3SSatish Balay 
2133c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2134cf242676SKris Buschelman 
2135c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
2136c3122656SLisandro Dalcin   if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); }
2137c3122656SLisandro Dalcin   a->row = row;
2138c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
2139c3122656SLisandro Dalcin   if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); }
2140c3122656SLisandro Dalcin   a->col = col;
2141c38d4ed2SBarry Smith 
2142c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
21434c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
214452e6d16bSBarry Smith   ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
2145c38d4ed2SBarry Smith 
2146cf242676SKris Buschelman   /*
2147cf242676SKris Buschelman       Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver
2148cf242676SKris Buschelman       for ILU(0) factorization with natural ordering
2149cf242676SKris Buschelman   */
2150899cda47SBarry Smith   if (inA->rmap.bs < 8) {
2151cf242676SKris Buschelman     ierr = MatSeqBAIJ_UpdateFactorNumeric_NaturalOrdering(inA);CHKERRQ(ierr);
2152cf242676SKris Buschelman   } else {
2153c38d4ed2SBarry Smith     if (!a->solve_work) {
2154899cda47SBarry Smith       ierr = PetscMalloc((inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
2155899cda47SBarry Smith       ierr = PetscLogObjectMemory(inA,(inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2156c38d4ed2SBarry Smith     }
21572d61bbb3SSatish Balay   }
21582d61bbb3SSatish Balay 
2159af281ebdSHong Zhang   ierr = MatLUFactorNumeric(inA,info,&outA);CHKERRQ(ierr);
2160667159a5SBarry Smith 
21612d61bbb3SSatish Balay   PetscFunctionReturn(0);
21622d61bbb3SSatish Balay }
2163d9b7c43dSSatish Balay 
2164fb2e594dSBarry Smith EXTERN_C_BEGIN
21654a2ae208SSatish Balay #undef __FUNCT__
21664a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ"
2167be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
216827a8da17SBarry Smith {
216927a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data;
2170c1ac3661SBarry Smith   PetscInt    i,nz,nbs;
217127a8da17SBarry Smith 
217227a8da17SBarry Smith   PetscFunctionBegin;
217314db4f74SSatish Balay   nz  = baij->maxnz/baij->bs2;
217414db4f74SSatish Balay   nbs = baij->nbs;
217527a8da17SBarry Smith   for (i=0; i<nz; i++) {
217627a8da17SBarry Smith     baij->j[i] = indices[i];
217727a8da17SBarry Smith   }
217827a8da17SBarry Smith   baij->nz = nz;
217914db4f74SSatish Balay   for (i=0; i<nbs; i++) {
218027a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
218127a8da17SBarry Smith   }
218227a8da17SBarry Smith 
218327a8da17SBarry Smith   PetscFunctionReturn(0);
218427a8da17SBarry Smith }
2185fb2e594dSBarry Smith EXTERN_C_END
218627a8da17SBarry Smith 
21874a2ae208SSatish Balay #undef __FUNCT__
21884a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices"
218927a8da17SBarry Smith /*@
219027a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
219127a8da17SBarry Smith        in the matrix.
219227a8da17SBarry Smith 
219327a8da17SBarry Smith   Input Parameters:
219427a8da17SBarry Smith +  mat - the SeqBAIJ matrix
219527a8da17SBarry Smith -  indices - the column indices
219627a8da17SBarry Smith 
219715091d37SBarry Smith   Level: advanced
219815091d37SBarry Smith 
219927a8da17SBarry Smith   Notes:
220027a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
220127a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
220227a8da17SBarry Smith   of the MatSetValues() operation.
220327a8da17SBarry Smith 
220427a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2205d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
220627a8da17SBarry Smith 
220727a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
220827a8da17SBarry Smith 
220927a8da17SBarry Smith @*/
2210be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
221127a8da17SBarry Smith {
2212c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
221327a8da17SBarry Smith 
221427a8da17SBarry Smith   PetscFunctionBegin;
22154482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
22164482741eSBarry Smith   PetscValidPointer(indices,2);
2217c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
221827a8da17SBarry Smith   if (f) {
221927a8da17SBarry Smith     ierr = (*f)(mat,indices);CHKERRQ(ierr);
222027a8da17SBarry Smith   } else {
2221634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices");
222227a8da17SBarry Smith   }
222327a8da17SBarry Smith   PetscFunctionReturn(0);
222427a8da17SBarry Smith }
222527a8da17SBarry Smith 
22264a2ae208SSatish Balay #undef __FUNCT__
2227985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ"
2228985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2229273d9f13SBarry Smith {
2230273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2231dfbe8321SBarry Smith   PetscErrorCode ierr;
2232c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2233273d9f13SBarry Smith   PetscReal      atmp;
223487828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2235273d9f13SBarry Smith   MatScalar      *aa;
2236c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2237273d9f13SBarry Smith 
2238273d9f13SBarry Smith   PetscFunctionBegin;
2239273d9f13SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2240899cda47SBarry Smith   bs   = A->rmap.bs;
2241273d9f13SBarry Smith   aa   = a->a;
2242273d9f13SBarry Smith   ai   = a->i;
2243273d9f13SBarry Smith   aj   = a->j;
2244273d9f13SBarry Smith   mbs  = a->mbs;
2245273d9f13SBarry Smith 
22462dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
22471ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2248273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2249899cda47SBarry Smith   if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2250273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2251273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2252273d9f13SBarry Smith     brow  = bs*i;
2253273d9f13SBarry Smith     for (j=0; j<ncols; j++){
2254273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++){
2255273d9f13SBarry Smith         for (krow=0; krow<bs; krow++){
2256273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2257273d9f13SBarry Smith           row = brow + krow;    /* row index */
2258a83599f4SBarry Smith           /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */
2259985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2260273d9f13SBarry Smith         }
2261273d9f13SBarry Smith       }
2262273d9f13SBarry Smith       aj++;
2263273d9f13SBarry Smith     }
2264273d9f13SBarry Smith   }
22651ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2266273d9f13SBarry Smith   PetscFunctionReturn(0);
2267273d9f13SBarry Smith }
2268273d9f13SBarry Smith 
22694a2ae208SSatish Balay #undef __FUNCT__
22703c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ"
22713c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
22723c896bc6SHong Zhang {
22733c896bc6SHong Zhang   PetscErrorCode ierr;
22743c896bc6SHong Zhang 
22753c896bc6SHong Zhang   PetscFunctionBegin;
22763c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
22773c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
22783c896bc6SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
22793c896bc6SHong Zhang     Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data;
22803c896bc6SHong Zhang 
2281899cda47SBarry Smith     if (a->i[A->rmap.N] != b->i[B->rmap.N]) {
22823c896bc6SHong Zhang       SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
22833c896bc6SHong Zhang     }
2284899cda47SBarry Smith     ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap.N])*sizeof(PetscScalar));CHKERRQ(ierr);
22853c896bc6SHong Zhang   } else {
22863c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
22873c896bc6SHong Zhang   }
22883c896bc6SHong Zhang   PetscFunctionReturn(0);
22893c896bc6SHong Zhang }
22903c896bc6SHong Zhang 
22913c896bc6SHong Zhang #undef __FUNCT__
22924a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ"
2293dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A)
2294273d9f13SBarry Smith {
2295dfbe8321SBarry Smith   PetscErrorCode ierr;
2296273d9f13SBarry Smith 
2297273d9f13SBarry Smith   PetscFunctionBegin;
22987edd0491SSatish Balay   ierr =  MatSeqBAIJSetPreallocation_SeqBAIJ(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr);
2299273d9f13SBarry Smith   PetscFunctionReturn(0);
2300273d9f13SBarry Smith }
2301273d9f13SBarry Smith 
23024a2ae208SSatish Balay #undef __FUNCT__
23034a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ"
2304dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2305f2a5309cSSatish Balay {
2306f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
2307f2a5309cSSatish Balay   PetscFunctionBegin;
2308f2a5309cSSatish Balay   *array = a->a;
2309f2a5309cSSatish Balay   PetscFunctionReturn(0);
2310f2a5309cSSatish Balay }
2311f2a5309cSSatish Balay 
23124a2ae208SSatish Balay #undef __FUNCT__
23134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ"
2314dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2315f2a5309cSSatish Balay {
2316f2a5309cSSatish Balay   PetscFunctionBegin;
2317f2a5309cSSatish Balay   PetscFunctionReturn(0);
2318f2a5309cSSatish Balay }
2319f2a5309cSSatish Balay 
232042ee4b1aSHong Zhang #include "petscblaslapack.h"
232142ee4b1aSHong Zhang #undef __FUNCT__
232242ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ"
2323f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
232442ee4b1aSHong Zhang {
232542ee4b1aSHong Zhang   Mat_SeqBAIJ    *x  = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data;
2326dfbe8321SBarry Smith   PetscErrorCode ierr;
2327899cda47SBarry Smith   PetscInt       i,bs=Y->rmap.bs,j,bs2;
23280805154bSBarry Smith   PetscBLASInt   one=1,bnz = PetscBLASIntCast(x->nz);
232942ee4b1aSHong Zhang 
233042ee4b1aSHong Zhang   PetscFunctionBegin;
233142ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2332f4df32b1SMatthew Knepley     PetscScalar alpha = a;
2333f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
2334c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2335c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
2336c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
2337c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
2338c537a176SHong Zhang     }
2339c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
2340c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
2341c4319e64SHong Zhang       y->XtoY = X;
2342c537a176SHong Zhang     }
2343c4319e64SHong Zhang     bs2 = bs*bs;
2344c537a176SHong Zhang     for (i=0; i<x->nz; i++) {
2345c4319e64SHong Zhang       j = 0;
2346c4319e64SHong Zhang       while (j < bs2){
2347f4df32b1SMatthew Knepley         y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]);
2348c4319e64SHong Zhang         j++;
2349c537a176SHong Zhang       }
2350c4319e64SHong Zhang     }
23511e2582c4SBarry Smith     ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr);
235242ee4b1aSHong Zhang   } else {
2353f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
235442ee4b1aSHong Zhang   }
235542ee4b1aSHong Zhang   PetscFunctionReturn(0);
235642ee4b1aSHong Zhang }
235742ee4b1aSHong Zhang 
235899cafbc1SBarry Smith #undef __FUNCT__
235999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ"
236099cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
236199cafbc1SBarry Smith {
236299cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
236399cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2364dd6ea824SBarry Smith   MatScalar      *aa = a->a;
236599cafbc1SBarry Smith 
236699cafbc1SBarry Smith   PetscFunctionBegin;
236799cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
236899cafbc1SBarry Smith   PetscFunctionReturn(0);
236999cafbc1SBarry Smith }
237099cafbc1SBarry Smith 
237199cafbc1SBarry Smith #undef __FUNCT__
237299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ"
237399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
237499cafbc1SBarry Smith {
237599cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
237699cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2377dd6ea824SBarry Smith   MatScalar      *aa = a->a;
237899cafbc1SBarry Smith 
237999cafbc1SBarry Smith   PetscFunctionBegin;
238099cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
238199cafbc1SBarry Smith   PetscFunctionReturn(0);
238299cafbc1SBarry Smith }
238399cafbc1SBarry Smith 
238499cafbc1SBarry Smith 
23852593348eSBarry Smith /* -------------------------------------------------------------------*/
2386cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2387cc2dc46cSBarry Smith        MatGetRow_SeqBAIJ,
2388cc2dc46cSBarry Smith        MatRestoreRow_SeqBAIJ,
2389cc2dc46cSBarry Smith        MatMult_SeqBAIJ_N,
239097304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N,
23917c922b88SBarry Smith        MatMultTranspose_SeqBAIJ,
23927c922b88SBarry Smith        MatMultTransposeAdd_SeqBAIJ,
2393cc2dc46cSBarry Smith        MatSolve_SeqBAIJ_N,
2394cc2dc46cSBarry Smith        0,
2395cc2dc46cSBarry Smith        0,
239697304618SKris Buschelman /*10*/ 0,
2397cc2dc46cSBarry Smith        MatLUFactor_SeqBAIJ,
2398cc2dc46cSBarry Smith        0,
2399b6490206SBarry Smith        0,
2400f2501298SSatish Balay        MatTranspose_SeqBAIJ,
240197304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ,
2402cc2dc46cSBarry Smith        MatEqual_SeqBAIJ,
2403cc2dc46cSBarry Smith        MatGetDiagonal_SeqBAIJ,
2404cc2dc46cSBarry Smith        MatDiagonalScale_SeqBAIJ,
2405cc2dc46cSBarry Smith        MatNorm_SeqBAIJ,
240697304618SKris Buschelman /*20*/ 0,
2407cc2dc46cSBarry Smith        MatAssemblyEnd_SeqBAIJ,
2408cc2dc46cSBarry Smith        0,
2409cc2dc46cSBarry Smith        MatSetOption_SeqBAIJ,
2410cc2dc46cSBarry Smith        MatZeroEntries_SeqBAIJ,
241197304618SKris Buschelman /*25*/ MatZeroRows_SeqBAIJ,
2412cc2dc46cSBarry Smith        MatLUFactorSymbolic_SeqBAIJ,
2413cc2dc46cSBarry Smith        MatLUFactorNumeric_SeqBAIJ_N,
2414c05c3958SHong Zhang        MatCholeskyFactorSymbolic_SeqBAIJ,
2415c05c3958SHong Zhang        MatCholeskyFactorNumeric_SeqBAIJ_N,
241697304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqBAIJ,
2417cc2dc46cSBarry Smith        MatILUFactorSymbolic_SeqBAIJ,
2418c05c3958SHong Zhang        MatICCFactorSymbolic_SeqBAIJ,
2419f2a5309cSSatish Balay        MatGetArray_SeqBAIJ,
2420f2a5309cSSatish Balay        MatRestoreArray_SeqBAIJ,
242197304618SKris Buschelman /*35*/ MatDuplicate_SeqBAIJ,
2422cc2dc46cSBarry Smith        0,
2423cc2dc46cSBarry Smith        0,
2424cc2dc46cSBarry Smith        MatILUFactor_SeqBAIJ,
2425cc2dc46cSBarry Smith        0,
242697304618SKris Buschelman /*40*/ MatAXPY_SeqBAIJ,
2427cc2dc46cSBarry Smith        MatGetSubMatrices_SeqBAIJ,
2428cc2dc46cSBarry Smith        MatIncreaseOverlap_SeqBAIJ,
2429cc2dc46cSBarry Smith        MatGetValues_SeqBAIJ,
24303c896bc6SHong Zhang        MatCopy_SeqBAIJ,
24318c07d4e3SBarry Smith /*45*/ 0,
2432cc2dc46cSBarry Smith        MatScale_SeqBAIJ,
2433cc2dc46cSBarry Smith        0,
2434cc2dc46cSBarry Smith        0,
2435cc2dc46cSBarry Smith        0,
2436521d7252SBarry Smith /*50*/ 0,
24373b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
243892c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
2439cc2dc46cSBarry Smith        0,
2440cc2dc46cSBarry Smith        0,
244197304618SKris Buschelman /*55*/ 0,
2442cc2dc46cSBarry Smith        0,
2443cc2dc46cSBarry Smith        0,
2444cc2dc46cSBarry Smith        0,
2445d3825aa8SBarry Smith        MatSetValuesBlocked_SeqBAIJ,
244697304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqBAIJ,
2447b9b97703SBarry Smith        MatDestroy_SeqBAIJ,
2448b9b97703SBarry Smith        MatView_SeqBAIJ,
2449357abbc8SBarry Smith        0,
2450273d9f13SBarry Smith        0,
245197304618SKris Buschelman /*65*/ 0,
2452273d9f13SBarry Smith        0,
2453273d9f13SBarry Smith        0,
2454273d9f13SBarry Smith        0,
2455273d9f13SBarry Smith        0,
2456985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqBAIJ,
245797304618SKris Buschelman        MatConvert_Basic,
2458273d9f13SBarry Smith        0,
245997304618SKris Buschelman        0,
246097304618SKris Buschelman        0,
246197304618SKris Buschelman /*75*/ 0,
246297304618SKris Buschelman        0,
246397304618SKris Buschelman        0,
246497304618SKris Buschelman        0,
246597304618SKris Buschelman        0,
246697304618SKris Buschelman /*80*/ 0,
246797304618SKris Buschelman        0,
246897304618SKris Buschelman        0,
246997304618SKris Buschelman        0,
2470865e5f61SKris Buschelman        MatLoad_SeqBAIJ,
2471865e5f61SKris Buschelman /*85*/ 0,
2472b01c7715SBarry Smith        0,
2473b01c7715SBarry Smith        0,
2474b01c7715SBarry Smith        0,
2475865e5f61SKris Buschelman        0,
2476865e5f61SKris Buschelman /*90*/ 0,
2477865e5f61SKris Buschelman        0,
2478865e5f61SKris Buschelman        0,
2479865e5f61SKris Buschelman        0,
2480865e5f61SKris Buschelman        0,
2481865e5f61SKris Buschelman /*95*/ 0,
2482865e5f61SKris Buschelman        0,
2483865e5f61SKris Buschelman        0,
248499cafbc1SBarry Smith        0,
248599cafbc1SBarry Smith        0,
248699cafbc1SBarry Smith /*100*/0,
248799cafbc1SBarry Smith        0,
248899cafbc1SBarry Smith        0,
248999cafbc1SBarry Smith        0,
249099cafbc1SBarry Smith        0,
249199cafbc1SBarry Smith /*105*/0,
249299cafbc1SBarry Smith        MatRealPart_SeqBAIJ,
24932af78befSBarry Smith        MatImaginaryPart_SeqBAIJ,
24942af78befSBarry Smith        0,
24952af78befSBarry Smith        0,
24962af78befSBarry Smith /*110*/0,
24972af78befSBarry Smith        0,
24982af78befSBarry Smith        0,
24992af78befSBarry Smith        0,
25002af78befSBarry Smith        MatMissingDiagonal_SeqBAIJ
25012af78befSBarry Smith /*115*/
250299cafbc1SBarry Smith };
25032593348eSBarry Smith 
25043e90b805SBarry Smith EXTERN_C_BEGIN
25054a2ae208SSatish Balay #undef __FUNCT__
25064a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ"
2507be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat)
25083e90b805SBarry Smith {
25093e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
2510899cda47SBarry Smith   PetscInt       nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2;
2511dfbe8321SBarry Smith   PetscErrorCode ierr;
25123e90b805SBarry Smith 
25133e90b805SBarry Smith   PetscFunctionBegin;
25143e90b805SBarry Smith   if (aij->nonew != 1) {
2515512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
25163e90b805SBarry Smith   }
25173e90b805SBarry Smith 
25183e90b805SBarry Smith   /* allocate space for values if not already there */
25193e90b805SBarry Smith   if (!aij->saved_values) {
252087828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
25213e90b805SBarry Smith   }
25223e90b805SBarry Smith 
25233e90b805SBarry Smith   /* copy values over */
252487828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
25253e90b805SBarry Smith   PetscFunctionReturn(0);
25263e90b805SBarry Smith }
25273e90b805SBarry Smith EXTERN_C_END
25283e90b805SBarry Smith 
25293e90b805SBarry Smith EXTERN_C_BEGIN
25304a2ae208SSatish Balay #undef __FUNCT__
25314a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ"
2532be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat)
25333e90b805SBarry Smith {
25343e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
25356849ba73SBarry Smith   PetscErrorCode ierr;
2536899cda47SBarry Smith   PetscInt       nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2;
25373e90b805SBarry Smith 
25383e90b805SBarry Smith   PetscFunctionBegin;
25393e90b805SBarry Smith   if (aij->nonew != 1) {
2540512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
25413e90b805SBarry Smith   }
25423e90b805SBarry Smith   if (!aij->saved_values) {
2543634064b4SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
25443e90b805SBarry Smith   }
25453e90b805SBarry Smith 
25463e90b805SBarry Smith   /* copy values over */
254787828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
25483e90b805SBarry Smith   PetscFunctionReturn(0);
25493e90b805SBarry Smith }
25503e90b805SBarry Smith EXTERN_C_END
25513e90b805SBarry Smith 
2552273d9f13SBarry Smith EXTERN_C_BEGIN
2553f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
2554f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2555273d9f13SBarry Smith EXTERN_C_END
2556273d9f13SBarry Smith 
2557273d9f13SBarry Smith EXTERN_C_BEGIN
25584a2ae208SSatish Balay #undef __FUNCT__
2559a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ"
2560be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2561a23d5eceSKris Buschelman {
2562a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
25636849ba73SBarry Smith   PetscErrorCode ierr;
2564a96a251dSBarry Smith   PetscInt       i,mbs,nbs,bs2,newbs = bs;
2565ab93d7beSBarry Smith   PetscTruth     flg,skipallocation = PETSC_FALSE;
2566a23d5eceSKris Buschelman 
2567a23d5eceSKris Buschelman   PetscFunctionBegin;
2568a23d5eceSKris Buschelman 
2569ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2570ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2571ab93d7beSBarry Smith     nz             = 0;
2572ab93d7beSBarry Smith   }
25738c07d4e3SBarry Smith 
25747adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr);
257517667f90SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",bs,&newbs,PETSC_NULL);CHKERRQ(ierr);
25768c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25778c07d4e3SBarry Smith 
2578a23d5eceSKris Buschelman   if (nnz && newbs != bs) {
2579634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz");
2580a23d5eceSKris Buschelman   }
2581a23d5eceSKris Buschelman   bs   = newbs;
2582a23d5eceSKris Buschelman 
2583899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
25846148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
25856148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
2586899cda47SBarry Smith 
2587899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2588899cda47SBarry Smith 
2589899cda47SBarry Smith   mbs  = B->rmap.n/bs;
2590899cda47SBarry Smith   nbs  = B->cmap.n/bs;
2591a23d5eceSKris Buschelman   bs2  = bs*bs;
2592a23d5eceSKris Buschelman 
2593899cda47SBarry Smith   if (mbs*bs!=B->rmap.n || nbs*bs!=B->cmap.n) {
2594899cda47SBarry Smith     SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap.N,B->cmap.n,bs);
2595a23d5eceSKris Buschelman   }
2596a23d5eceSKris Buschelman 
2597a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
259877431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
2599a23d5eceSKris Buschelman   if (nnz) {
2600a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
260177431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
260277431f27SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
2603a23d5eceSKris Buschelman     }
2604a23d5eceSKris Buschelman   }
2605a23d5eceSKris Buschelman 
2606a23d5eceSKris Buschelman   b       = (Mat_SeqBAIJ*)B->data;
26077adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
26088c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
26098c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
26108c07d4e3SBarry Smith 
2611a23d5eceSKris Buschelman   B->ops->solve               = MatSolve_SeqBAIJ_Update;
2612a23d5eceSKris Buschelman   B->ops->solvetranspose      = MatSolveTranspose_SeqBAIJ_Update;
2613a23d5eceSKris Buschelman   if (!flg) {
2614a23d5eceSKris Buschelman     switch (bs) {
2615a23d5eceSKris Buschelman     case 1:
2616a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1;
2617a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_1;
2618a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_1;
26196d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_1;
2620a23d5eceSKris Buschelman       break;
2621a23d5eceSKris Buschelman     case 2:
2622a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2;
2623a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_2;
2624a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_2;
2625b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_2;
2626a23d5eceSKris Buschelman       break;
2627a23d5eceSKris Buschelman     case 3:
2628a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3;
2629a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_3;
2630a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_3;
2631b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_3;
2632a23d5eceSKris Buschelman       break;
2633a23d5eceSKris Buschelman     case 4:
2634a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4;
2635a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_4;
2636a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_4;
2637b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_4;
2638a23d5eceSKris Buschelman       break;
2639a23d5eceSKris Buschelman     case 5:
2640a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5;
2641a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_5;
2642a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_5;
2643b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_5;
2644a23d5eceSKris Buschelman       break;
2645a23d5eceSKris Buschelman     case 6:
2646a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_6;
2647a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_6;
2648a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_6;
26496d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_6;
2650a23d5eceSKris Buschelman       break;
2651a23d5eceSKris Buschelman     case 7:
2652a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_7;
2653a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_7;
2654a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_7;
26556d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_7;
2656a23d5eceSKris Buschelman       break;
2657a23d5eceSKris Buschelman     default:
2658a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_N;
2659a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_N;
2660a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_N;
2661a23d5eceSKris Buschelman       break;
2662a23d5eceSKris Buschelman     }
2663a23d5eceSKris Buschelman   }
2664899cda47SBarry Smith   B->rmap.bs      = bs;
2665a23d5eceSKris Buschelman   b->mbs     = mbs;
2666a23d5eceSKris Buschelman   b->nbs     = nbs;
2667ab93d7beSBarry Smith   if (!skipallocation) {
26682ee49352SLisandro Dalcin     if (!b->imax) {
2669ab93d7beSBarry Smith       ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
26702ee49352SLisandro Dalcin     }
2671ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
2672ab93d7beSBarry Smith     for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
2673a23d5eceSKris Buschelman     if (!nnz) {
2674a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2675a23d5eceSKris Buschelman       else if (nz <= 0)        nz = 1;
2676a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
2677a23d5eceSKris Buschelman       nz = nz*mbs;
2678a23d5eceSKris Buschelman     } else {
2679a23d5eceSKris Buschelman       nz = 0;
2680a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
2681a23d5eceSKris Buschelman     }
2682a23d5eceSKris Buschelman 
2683a23d5eceSKris Buschelman     /* allocate the matrix space */
26842ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
2685899cda47SBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap.N+1,PetscInt,&b->i);CHKERRQ(ierr);
26862ee49352SLisandro Dalcin     ierr = PetscLogObjectMemory(B,(B->rmap.N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2687a23d5eceSKris Buschelman     ierr  = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
2688c1ac3661SBarry Smith     ierr  = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
2689a23d5eceSKris Buschelman     b->singlemalloc = PETSC_TRUE;
2690a23d5eceSKris Buschelman     b->i[0] = 0;
2691a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
2692a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
2693a23d5eceSKris Buschelman     }
2694e6b907acSBarry Smith     b->free_a     = PETSC_TRUE;
2695e6b907acSBarry Smith     b->free_ij    = PETSC_TRUE;
2696e811da20SHong Zhang   } else {
2697e6b907acSBarry Smith     b->free_a     = PETSC_FALSE;
2698e6b907acSBarry Smith     b->free_ij    = PETSC_FALSE;
2699ab93d7beSBarry Smith   }
2700a23d5eceSKris Buschelman 
2701899cda47SBarry Smith   B->rmap.bs          = bs;
2702a23d5eceSKris Buschelman   b->bs2              = bs2;
2703a23d5eceSKris Buschelman   b->mbs              = mbs;
2704a23d5eceSKris Buschelman   b->nz               = 0;
2705a23d5eceSKris Buschelman   b->maxnz            = nz*bs2;
2706a23d5eceSKris Buschelman   B->info.nz_unneeded = (PetscReal)b->maxnz;
2707a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2708a23d5eceSKris Buschelman }
2709a23d5eceSKris Buschelman EXTERN_C_END
2710a23d5eceSKris Buschelman 
2711b24902e0SBarry Smith EXTERN_C_BEGIN
2712b24902e0SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*);
2713b24902e0SBarry Smith EXTERN_C_END
2714b24902e0SBarry Smith 
27150bad9183SKris Buschelman /*MC
2716fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
27170bad9183SKris Buschelman    block sparse compressed row format.
27180bad9183SKris Buschelman 
27190bad9183SKris Buschelman    Options Database Keys:
27200bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
27210bad9183SKris Buschelman 
27220bad9183SKris Buschelman   Level: beginner
27230bad9183SKris Buschelman 
2724f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
27250bad9183SKris Buschelman M*/
27260bad9183SKris Buschelman 
2727b24902e0SBarry Smith 
2728a23d5eceSKris Buschelman EXTERN_C_BEGIN
2729a23d5eceSKris Buschelman #undef __FUNCT__
27304a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ"
2731be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B)
27322593348eSBarry Smith {
2733dfbe8321SBarry Smith   PetscErrorCode ierr;
2734c1ac3661SBarry Smith   PetscMPIInt    size;
2735b6490206SBarry Smith   Mat_SeqBAIJ    *b;
27363b2fbd54SBarry Smith 
27373a40ed3dSBarry Smith   PetscFunctionBegin;
27387adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr);
273929bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
2740b6490206SBarry Smith 
274138f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr);
2742b0a32e0cSBarry Smith   B->data = (void*)b;
2743549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
274490f02eecSBarry Smith   B->mapping          = 0;
27452593348eSBarry Smith   b->row              = 0;
27462593348eSBarry Smith   b->col              = 0;
2747e51c0b9cSSatish Balay   b->icol             = 0;
27482593348eSBarry Smith   b->reallocs         = 0;
27493e90b805SBarry Smith   b->saved_values     = 0;
27502593348eSBarry Smith 
2751c4992f7dSBarry Smith   b->roworiented      = PETSC_TRUE;
27522593348eSBarry Smith   b->nonew            = 0;
27532593348eSBarry Smith   b->diag             = 0;
27542593348eSBarry Smith   b->solve_work       = 0;
2755de6a44a3SBarry Smith   b->mult_work        = 0;
27562a1b7f2aSHong Zhang   B->spptr            = 0;
27570e6d2581SBarry Smith   B->info.nz_unneeded = (PetscReal)b->maxnz;
2758883fce79SBarry Smith   b->keepzeroedrows   = PETSC_FALSE;
2759c4319e64SHong Zhang   b->xtoy              = 0;
2760c4319e64SHong Zhang   b->XtoY              = 0;
276173e7a558SHong Zhang   b->compressedrow.use     = PETSC_FALSE;
276226e093fcSHong Zhang   b->compressedrow.nrows   = 0;
276373e7a558SHong Zhang   b->compressedrow.i       = PETSC_NULL;
276473e7a558SHong Zhang   b->compressedrow.rindex  = PETSC_NULL;
276573e7a558SHong Zhang   b->compressedrow.checked = PETSC_FALSE;
276688e51ccdSHong Zhang   B->same_nonzero          = PETSC_FALSE;
27674e220ebcSLois Curfman McInnes 
2768b24902e0SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C",
2769b24902e0SBarry Smith                                      "MatGetFactor_seqbaij_petsc",
2770b24902e0SBarry Smith                                      MatGetFactor_seqbaij_petsc);CHKERRQ(ierr);
277143516a2dSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C",
277243516a2dSKris Buschelman                                      "MatInvertBlockDiagonal_SeqBAIJ",
277343516a2dSKris Buschelman                                       MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
2774f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
27753e90b805SBarry Smith                                      "MatStoreValues_SeqBAIJ",
2776bc4b532fSSatish Balay                                       MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
2777f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
27783e90b805SBarry Smith                                      "MatRetrieveValues_SeqBAIJ",
2779bc4b532fSSatish Balay                                       MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
2780f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",
278127a8da17SBarry Smith                                      "MatSeqBAIJSetColumnIndices_SeqBAIJ",
2782bc4b532fSSatish Balay                                       MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
2783a6175056SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C",
2784273d9f13SBarry Smith                                      "MatConvert_SeqBAIJ_SeqAIJ",
2785273d9f13SBarry Smith                                       MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
2786a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",
2787a0e1a404SHong Zhang                                      "MatConvert_SeqBAIJ_SeqSBAIJ",
2788a0e1a404SHong Zhang                                       MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
2789a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C",
2790a23d5eceSKris Buschelman                                      "MatSeqBAIJSetPreallocation_SeqBAIJ",
2791a23d5eceSKris Buschelman                                       MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
279217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
27933a40ed3dSBarry Smith   PetscFunctionReturn(0);
27942593348eSBarry Smith }
2795273d9f13SBarry Smith EXTERN_C_END
27962593348eSBarry Smith 
27974a2ae208SSatish Balay #undef __FUNCT__
2798b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ"
2799b24902e0SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
28002593348eSBarry Smith {
2801b24902e0SBarry Smith   Mat            C = *B;
2802b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
28036849ba73SBarry Smith   PetscErrorCode ierr;
2804a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
2805de6a44a3SBarry Smith 
28063a40ed3dSBarry Smith   PetscFunctionBegin;
280729bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
28082593348eSBarry Smith 
280933b91e9fSSatish Balay   ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr);
2810b6490206SBarry Smith   for (i=0; i<mbs; i++) {
28112593348eSBarry Smith     c->imax[i] = a->imax[i];
28122593348eSBarry Smith     c->ilen[i] = a->ilen[i];
28132593348eSBarry Smith   }
28142593348eSBarry Smith 
28152593348eSBarry Smith   /* allocate the matrix space */
2816a96a251dSBarry Smith   ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
2817c4992f7dSBarry Smith   c->singlemalloc = PETSC_TRUE;
2818c1ac3661SBarry Smith   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
2819b6490206SBarry Smith   if (mbs > 0) {
2820c1ac3661SBarry Smith     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
28212e8a6d31SBarry Smith     if (cpvalues == MAT_COPY_VALUES) {
2822549d3d68SSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
28232e8a6d31SBarry Smith     } else {
2824549d3d68SSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
28252593348eSBarry Smith     }
28262593348eSBarry Smith   }
28272593348eSBarry Smith   c->roworiented = a->roworiented;
28282593348eSBarry Smith   c->nonew       = a->nonew;
2829*5c9eb25fSBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,&A->rmap,&C->rmap);CHKERRQ(ierr);
2830*5c9eb25fSBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,&A->cmap,&C->cmap);CHKERRQ(ierr);
2831*5c9eb25fSBarry Smith   c->bs2         = a->bs2;
2832*5c9eb25fSBarry Smith   c->mbs         = a->mbs;
2833*5c9eb25fSBarry Smith   c->nbs         = a->nbs;
28342593348eSBarry Smith 
28352593348eSBarry Smith   if (a->diag) {
2836c1ac3661SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
283752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
2838b6490206SBarry Smith     for (i=0; i<mbs; i++) {
28392593348eSBarry Smith       c->diag[i] = a->diag[i];
28402593348eSBarry Smith     }
284198305bb5SBarry Smith   } else c->diag        = 0;
28422593348eSBarry Smith   c->nz                 = a->nz;
28432593348eSBarry Smith   c->maxnz              = a->maxnz;
28442593348eSBarry Smith   c->solve_work         = 0;
28457fc0212eSBarry Smith   c->mult_work          = 0;
2846e6b907acSBarry Smith   c->free_a             = PETSC_TRUE;
2847e6b907acSBarry Smith   c->free_ij            = PETSC_TRUE;
2848273d9f13SBarry Smith   C->preallocated       = PETSC_TRUE;
2849273d9f13SBarry Smith   C->assembled          = PETSC_TRUE;
285088e51ccdSHong Zhang 
285188e51ccdSHong Zhang   c->compressedrow.use     = a->compressedrow.use;
285288e51ccdSHong Zhang   c->compressedrow.nrows   = a->compressedrow.nrows;
285388e51ccdSHong Zhang   c->compressedrow.checked = a->compressedrow.checked;
285488e51ccdSHong Zhang   if ( a->compressedrow.checked && a->compressedrow.use){
285588e51ccdSHong Zhang     i = a->compressedrow.nrows;
285688e51ccdSHong Zhang     ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr);
285788e51ccdSHong Zhang     c->compressedrow.rindex = c->compressedrow.i + i + 1;
285888e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr);
285988e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr);
286088e51ccdSHong Zhang   } else {
286188e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
286288e51ccdSHong Zhang     c->compressedrow.i      = PETSC_NULL;
286388e51ccdSHong Zhang     c->compressedrow.rindex = PETSC_NULL;
286488e51ccdSHong Zhang   }
286588e51ccdSHong Zhang   C->same_nonzero = A->same_nonzero;
28662593348eSBarry Smith   *B = C;
28677adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
28683a40ed3dSBarry Smith   PetscFunctionReturn(0);
28692593348eSBarry Smith }
28702593348eSBarry Smith 
28714a2ae208SSatish Balay #undef __FUNCT__
2872b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ"
2873b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
2874b24902e0SBarry Smith {
2875b24902e0SBarry Smith   Mat_SeqBAIJ    *c,*a = (Mat_SeqBAIJ*)A->data;
2876b24902e0SBarry Smith   PetscErrorCode ierr;
2877b24902e0SBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
2878b24902e0SBarry Smith 
2879b24902e0SBarry Smith   PetscFunctionBegin;
2880*5c9eb25fSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr);
2881*5c9eb25fSBarry Smith   ierr = MatSetSizes(*B,A->rmap.N,A->cmap.n,A->rmap.N,A->cmap.n);CHKERRQ(ierr);
2882*5c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
2883b24902e0SBarry Smith   ierr = MatDuplicateNoCreate_SeqBAIJ(A,cpvalues,B);
2884b24902e0SBarry Smith   PetscFunctionReturn(0);
2885b24902e0SBarry Smith }
2886b24902e0SBarry Smith 
2887b24902e0SBarry Smith #undef __FUNCT__
28884a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ"
2889f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, MatType type,Mat *A)
28902593348eSBarry Smith {
2891b6490206SBarry Smith   Mat_SeqBAIJ    *a;
28922593348eSBarry Smith   Mat            B;
28936849ba73SBarry Smith   PetscErrorCode ierr;
2894b24ad042SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
2895c1ac3661SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
2896c1ac3661SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
2897c1ac3661SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
2898b24ad042SBarry Smith   PetscMPIInt    size;
2899b24ad042SBarry Smith   int            fd;
290087828ca2SBarry Smith   PetscScalar    *aa;
290119bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
29022593348eSBarry Smith 
29033a40ed3dSBarry Smith   PetscFunctionBegin;
29048c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
29058c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
29068c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2907de6a44a3SBarry Smith   bs2  = bs*bs;
2908b6490206SBarry Smith 
2909d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
291029bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
2911b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
29120752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
2913552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
29142593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
29152593348eSBarry Smith 
2916d64ed03dSBarry Smith   if (header[3] < 0) {
291729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
2918d64ed03dSBarry Smith   }
2919d64ed03dSBarry Smith 
292029bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
292135aab85fSBarry Smith 
292235aab85fSBarry Smith   /*
292335aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
292435aab85fSBarry Smith     divisible by the blocksize
292535aab85fSBarry Smith   */
2926b6490206SBarry Smith   mbs        = M/bs;
292735aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
292835aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
292935aab85fSBarry Smith   else                  mbs++;
293035aab85fSBarry Smith   if (extra_rows) {
29311e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
293235aab85fSBarry Smith   }
2933b6490206SBarry Smith 
29342593348eSBarry Smith   /* read in row lengths */
2935c1ac3661SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
29360752156aSBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
293735aab85fSBarry Smith   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
29382593348eSBarry Smith 
2939b6490206SBarry Smith   /* read in column indices */
2940c1ac3661SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
29410752156aSBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
294235aab85fSBarry Smith   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
2943b6490206SBarry Smith 
2944b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
2945c1ac3661SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr);
2946c1ac3661SBarry Smith   ierr     = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
2947c1ac3661SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
2948c1ac3661SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
294935aab85fSBarry Smith   masked   = mask + mbs;
2950b6490206SBarry Smith   rowcount = 0; nzcount = 0;
2951b6490206SBarry Smith   for (i=0; i<mbs; i++) {
295235aab85fSBarry Smith     nmask = 0;
2953b6490206SBarry Smith     for (j=0; j<bs; j++) {
2954b6490206SBarry Smith       kmax = rowlengths[rowcount];
2955b6490206SBarry Smith       for (k=0; k<kmax; k++) {
295635aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
295735aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
2958b6490206SBarry Smith       }
2959b6490206SBarry Smith       rowcount++;
2960b6490206SBarry Smith     }
296135aab85fSBarry Smith     browlengths[i] += nmask;
296235aab85fSBarry Smith     /* zero out the mask elements we set */
296335aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
2964b6490206SBarry Smith   }
2965b6490206SBarry Smith 
29662593348eSBarry Smith   /* create our matrix */
2967f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&B);
2968f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);
296978ae41b4SKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
2970ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr);
2971b6490206SBarry Smith   a = (Mat_SeqBAIJ*)B->data;
29722593348eSBarry Smith 
29732593348eSBarry Smith   /* set matrix "i" values */
2974de6a44a3SBarry Smith   a->i[0] = 0;
2975b6490206SBarry Smith   for (i=1; i<= mbs; i++) {
2976b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
2977b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
29782593348eSBarry Smith   }
2979b6490206SBarry Smith   a->nz         = 0;
2980b6490206SBarry Smith   for (i=0; i<mbs; i++) a->nz += browlengths[i];
29812593348eSBarry Smith 
2982b6490206SBarry Smith   /* read in nonzero values */
298387828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
29840752156aSBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
298535aab85fSBarry Smith   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
2986b6490206SBarry Smith 
2987b6490206SBarry Smith   /* set "a" and "j" values into matrix */
2988b6490206SBarry Smith   nzcount = 0; jcount = 0;
2989b6490206SBarry Smith   for (i=0; i<mbs; i++) {
2990b6490206SBarry Smith     nzcountb = nzcount;
299135aab85fSBarry Smith     nmask    = 0;
2992b6490206SBarry Smith     for (j=0; j<bs; j++) {
2993b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2994b6490206SBarry Smith       for (k=0; k<kmax; k++) {
299535aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
299635aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
2997b6490206SBarry Smith       }
2998b6490206SBarry Smith     }
2999de6a44a3SBarry Smith     /* sort the masked values */
3000433994e6SBarry Smith     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3001de6a44a3SBarry Smith 
3002b6490206SBarry Smith     /* set "j" values into matrix */
3003b6490206SBarry Smith     maskcount = 1;
300435aab85fSBarry Smith     for (j=0; j<nmask; j++) {
300535aab85fSBarry Smith       a->j[jcount++]  = masked[j];
3006de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
3007b6490206SBarry Smith     }
3008b6490206SBarry Smith     /* set "a" values into matrix */
3009de6a44a3SBarry Smith     ishift = bs2*a->i[i];
3010b6490206SBarry Smith     for (j=0; j<bs; j++) {
3011b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3012b6490206SBarry Smith       for (k=0; k<kmax; k++) {
3013de6a44a3SBarry Smith         tmp       = jj[nzcountb]/bs ;
3014de6a44a3SBarry Smith         block     = mask[tmp] - 1;
3015de6a44a3SBarry Smith         point     = jj[nzcountb] - bs*tmp;
3016de6a44a3SBarry Smith         idx       = ishift + bs2*block + j + bs*point;
3017375fe846SBarry Smith         a->a[idx] = (MatScalar)aa[nzcountb++];
3018b6490206SBarry Smith       }
3019b6490206SBarry Smith     }
302035aab85fSBarry Smith     /* zero out the mask elements we set */
302135aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3022b6490206SBarry Smith   }
302329bbc08cSBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3024b6490206SBarry Smith 
3025606d414cSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3026606d414cSSatish Balay   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3027606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
3028606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
3029606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
3030b6490206SBarry Smith 
303178ae41b4SKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
303278ae41b4SKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
30339c01be13SBarry Smith   ierr = MatView_Private(B);CHKERRQ(ierr);
303478ae41b4SKris Buschelman 
303578ae41b4SKris Buschelman   *A = B;
30363a40ed3dSBarry Smith   PetscFunctionReturn(0);
30372593348eSBarry Smith }
30382593348eSBarry Smith 
30394a2ae208SSatish Balay #undef __FUNCT__
30404a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ"
3041273d9f13SBarry Smith /*@C
3042273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3043273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3044273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3045273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3046273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
30472593348eSBarry Smith 
3048273d9f13SBarry Smith    Collective on MPI_Comm
3049273d9f13SBarry Smith 
3050273d9f13SBarry Smith    Input Parameters:
3051273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3052273d9f13SBarry Smith .  bs - size of block
3053273d9f13SBarry Smith .  m - number of rows
3054273d9f13SBarry Smith .  n - number of columns
305535d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
305635d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
3057273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3058273d9f13SBarry Smith 
3059273d9f13SBarry Smith    Output Parameter:
3060273d9f13SBarry Smith .  A - the matrix
3061273d9f13SBarry Smith 
3062175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3063175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
3064175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
3065175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3066175b88e8SBarry Smith 
3067273d9f13SBarry Smith    Options Database Keys:
3068273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3069273d9f13SBarry Smith                      block calculations (much slower)
3070273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3071273d9f13SBarry Smith 
3072273d9f13SBarry Smith    Level: intermediate
3073273d9f13SBarry Smith 
3074273d9f13SBarry Smith    Notes:
3075d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3076d1be2dadSMatthew Knepley 
307749a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
307849a6f317SBarry Smith 
307935d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
308035d8aa7fSBarry Smith 
3081273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3082273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3083273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3084273d9f13SBarry Smith 
3085273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3086273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3087273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3088273d9f13SBarry Smith    matrices.
3089273d9f13SBarry Smith 
3090273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ()
3091273d9f13SBarry Smith @*/
3092be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3093273d9f13SBarry Smith {
3094dfbe8321SBarry Smith   PetscErrorCode ierr;
3095273d9f13SBarry Smith 
3096273d9f13SBarry Smith   PetscFunctionBegin;
3097f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3098f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3099273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3100ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3101273d9f13SBarry Smith   PetscFunctionReturn(0);
3102273d9f13SBarry Smith }
3103273d9f13SBarry Smith 
31044a2ae208SSatish Balay #undef __FUNCT__
31054a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation"
3106273d9f13SBarry Smith /*@C
3107273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3108273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3109273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3110273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3111273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3112273d9f13SBarry Smith 
3113273d9f13SBarry Smith    Collective on MPI_Comm
3114273d9f13SBarry Smith 
3115273d9f13SBarry Smith    Input Parameters:
3116273d9f13SBarry Smith +  A - the matrix
3117273d9f13SBarry Smith .  bs - size of block
3118273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3119273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
3120273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3121273d9f13SBarry Smith 
3122273d9f13SBarry Smith    Options Database Keys:
3123273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3124273d9f13SBarry Smith                      block calculations (much slower)
3125273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3126273d9f13SBarry Smith 
3127273d9f13SBarry Smith    Level: intermediate
3128273d9f13SBarry Smith 
3129273d9f13SBarry Smith    Notes:
313049a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
313149a6f317SBarry Smith 
3132aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3133aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3134aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3135aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3136aa95bbe8SBarry Smith 
3137273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3138273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3139273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3140273d9f13SBarry Smith 
3141273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3142273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3143273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3144273d9f13SBarry Smith    matrices.
3145273d9f13SBarry Smith 
3146aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo()
3147273d9f13SBarry Smith @*/
3148be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3149273d9f13SBarry Smith {
3150c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
3151273d9f13SBarry Smith 
3152273d9f13SBarry Smith   PetscFunctionBegin;
3153a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3154a23d5eceSKris Buschelman   if (f) {
3155a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
3156273d9f13SBarry Smith   }
3157273d9f13SBarry Smith   PetscFunctionReturn(0);
3158273d9f13SBarry Smith }
3159a1d92eedSBarry Smith 
3160c75a6043SHong Zhang #undef __FUNCT__
3161c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays"
3162c75a6043SHong Zhang /*@
3163c75a6043SHong Zhang      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements
3164c75a6043SHong Zhang               (upper triangular entries in CSR format) provided by the user.
3165c75a6043SHong Zhang 
3166c75a6043SHong Zhang      Collective on MPI_Comm
3167c75a6043SHong Zhang 
3168c75a6043SHong Zhang    Input Parameters:
3169c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3170c75a6043SHong Zhang .  bs - size of block
3171c75a6043SHong Zhang .  m - number of rows
3172c75a6043SHong Zhang .  n - number of columns
3173c75a6043SHong Zhang .  i - row indices
3174c75a6043SHong Zhang .  j - column indices
3175c75a6043SHong Zhang -  a - matrix values
3176c75a6043SHong Zhang 
3177c75a6043SHong Zhang    Output Parameter:
3178c75a6043SHong Zhang .  mat - the matrix
3179c75a6043SHong Zhang 
3180c75a6043SHong Zhang    Level: intermediate
3181c75a6043SHong Zhang 
3182c75a6043SHong Zhang    Notes:
3183c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3184c75a6043SHong Zhang     once the matrix is destroyed
3185c75a6043SHong Zhang 
3186c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3187c75a6043SHong Zhang 
3188c75a6043SHong Zhang        The i and j indices are 0 based
3189c75a6043SHong Zhang 
3190c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ()
3191c75a6043SHong Zhang 
3192c75a6043SHong Zhang @*/
3193c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat)
3194c75a6043SHong Zhang {
3195c75a6043SHong Zhang   PetscErrorCode ierr;
3196c75a6043SHong Zhang   PetscInt       ii;
3197c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3198c75a6043SHong Zhang 
3199c75a6043SHong Zhang   PetscFunctionBegin;
3200c75a6043SHong Zhang   if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
3201c75a6043SHong Zhang   if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3202c75a6043SHong Zhang 
3203c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3204c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3205c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3206c75a6043SHong Zhang   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3207c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3208c75a6043SHong Zhang   ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr);
3209c75a6043SHong Zhang 
3210c75a6043SHong Zhang   baij->i = i;
3211c75a6043SHong Zhang   baij->j = j;
3212c75a6043SHong Zhang   baij->a = a;
3213c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3214c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3215e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3216e6b907acSBarry Smith   baij->free_ij       = PETSC_FALSE;
3217c75a6043SHong Zhang 
3218c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3219c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3220c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3221c75a6043SHong Zhang     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3222c75a6043SHong Zhang #endif
3223c75a6043SHong Zhang   }
3224c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3225c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3226c75a6043SHong Zhang     if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3227c75a6043SHong Zhang     if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3228c75a6043SHong Zhang   }
3229c75a6043SHong Zhang #endif
3230c75a6043SHong Zhang 
3231c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3232c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3233c75a6043SHong Zhang   PetscFunctionReturn(0);
3234c75a6043SHong Zhang }
3235