xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 70990e77101b73c47f12ef096579f519803c5fbd)
1be1d678aSKris Buschelman 
22593348eSBarry Smith /*
3b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
42593348eSBarry Smith   matrix storage format.
52593348eSBarry Smith */
6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h>  /*I   "petscmat.h"  I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h>
9af0996ceSBarry Smith #include <petsc/private/kernels/blockmatmult.h>
1043516a2dSKris Buschelman 
117ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
127ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
137ea3e4caSstefano_zampini #endif
147ea3e4caSstefano_zampini 
15b5b72c8aSIrina Sokolova #if defined(PETSC_HAVE_MKL_SPARSE_OPTIMIZE)
16fd9d3c67SJed Brown PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBAIJMKL(Mat,MatType,MatReuse,Mat*);
17b5b72c8aSIrina Sokolova #endif
18c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*);
1975d48cdbSStefano Zampini PETSC_INTERN PetscErrorCode MatPtAP_IS_XAIJ(Mat,Mat,MatReuse,PetscReal,Mat*);
20b5b72c8aSIrina Sokolova 
21713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_SeqBAIJ(Mat A,const PetscScalar **values)
22b01c7715SBarry Smith {
23b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
246849ba73SBarry Smith   PetscErrorCode ierr;
25de80f912SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs,ipvt[5],bs2 = bs*bs,*v_pivots;
267f0c90edSBarry Smith   MatScalar      *v    = a->a,*odiag,*diag,work[25],*v_work;
2762bba022SBarry Smith   PetscReal      shift = 0.0;
281a9391e3SHong Zhang   PetscBool      allowzeropivot,zeropivotdetected=PETSC_FALSE;
29b01c7715SBarry Smith 
30b01c7715SBarry Smith   PetscFunctionBegin;
31a455e926SHong Zhang   allowzeropivot = PetscNot(A->erroriffailure);
32a455e926SHong Zhang 
339797317bSBarry Smith   if (a->idiagvalid) {
349797317bSBarry Smith     if (values) *values = a->idiag;
359797317bSBarry Smith     PetscFunctionReturn(0);
369797317bSBarry Smith   }
37b01c7715SBarry Smith   ierr        = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
38b01c7715SBarry Smith   diag_offset = a->diag;
39b01c7715SBarry Smith   if (!a->idiag) {
407f0c90edSBarry Smith     ierr = PetscMalloc1(bs2*mbs,&a->idiag);CHKERRQ(ierr);
417f0c90edSBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,bs2*mbs*sizeof(PetscScalar));CHKERRQ(ierr);
42b01c7715SBarry Smith   }
43b01c7715SBarry Smith   diag  = a->idiag;
44bbead8a2SBarry Smith   if (values) *values = a->idiag;
45b01c7715SBarry Smith   /* factor and invert each block */
46521d7252SBarry Smith   switch (bs) {
47ab040260SJed Brown   case 1:
48ab040260SJed Brown     for (i=0; i<mbs; i++) {
49ab040260SJed Brown       odiag    = v + 1*diag_offset[i];
50ab040260SJed Brown       diag[0]  = odiag[0];
51ec1892c8SHong Zhang 
52ec1892c8SHong Zhang       if (PetscAbsScalar(diag[0] + shift) < PETSC_MACHINE_EPSILON) {
53ec1892c8SHong Zhang         if (allowzeropivot) {
547b6c816cSBarry Smith           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
557b6c816cSBarry Smith           A->factorerror_zeropivot_value = PetscAbsScalar(diag[0]);
567b6c816cSBarry Smith           A->factorerror_zeropivot_row   = i;
57ec1892c8SHong Zhang           ierr = PetscInfo1(A,"Zero pivot, row %D\n",i);CHKERRQ(ierr);
587b6c816cSBarry Smith         } else SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot, row %D pivot value %g tolerance %g",i,(double)PetscAbsScalar(diag[0]),(double)PETSC_MACHINE_EPSILON);
59ec1892c8SHong Zhang       }
60ec1892c8SHong Zhang 
61d4a378daSJed Brown       diag[0]  = (PetscScalar)1.0 / (diag[0] + shift);
62ab040260SJed Brown       diag    += 1;
63ab040260SJed Brown     }
64ab040260SJed Brown     break;
65b01c7715SBarry Smith   case 2:
66b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
67b01c7715SBarry Smith       odiag    = v + 4*diag_offset[i];
68b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
69a455e926SHong Zhang       ierr     = PetscKernel_A_gets_inverse_A_2(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
707b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
71b01c7715SBarry Smith       diag    += 4;
72b01c7715SBarry Smith     }
73b01c7715SBarry Smith     break;
74b01c7715SBarry Smith   case 3:
75b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
76b01c7715SBarry Smith       odiag    = v + 9*diag_offset[i];
77b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
78b01c7715SBarry Smith       diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
79b01c7715SBarry Smith       diag[8]  = odiag[8];
80a455e926SHong Zhang       ierr     = PetscKernel_A_gets_inverse_A_3(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
817b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
82b01c7715SBarry Smith       diag    += 9;
83b01c7715SBarry Smith     }
84b01c7715SBarry Smith     break;
85b01c7715SBarry Smith   case 4:
86b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
87b01c7715SBarry Smith       odiag  = v + 16*diag_offset[i];
88580bdb30SBarry Smith       ierr   = PetscArraycpy(diag,odiag,16);CHKERRQ(ierr);
89a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_4(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
907b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
91b01c7715SBarry Smith       diag  += 16;
92b01c7715SBarry Smith     }
93b01c7715SBarry Smith     break;
94b01c7715SBarry Smith   case 5:
95b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
96b01c7715SBarry Smith       odiag  = v + 25*diag_offset[i];
97580bdb30SBarry Smith       ierr   = PetscArraycpy(diag,odiag,25);CHKERRQ(ierr);
98a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_5(diag,ipvt,work,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
997b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
100b01c7715SBarry Smith       diag  += 25;
101b01c7715SBarry Smith     }
102b01c7715SBarry Smith     break;
103d49b2adcSBarry Smith   case 6:
104d49b2adcSBarry Smith     for (i=0; i<mbs; i++) {
105d49b2adcSBarry Smith       odiag  = v + 36*diag_offset[i];
106580bdb30SBarry Smith       ierr   = PetscArraycpy(diag,odiag,36);CHKERRQ(ierr);
107a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_6(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
1087b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
109d49b2adcSBarry Smith       diag  += 36;
110d49b2adcSBarry Smith     }
111d49b2adcSBarry Smith     break;
112de80f912SBarry Smith   case 7:
113de80f912SBarry Smith     for (i=0; i<mbs; i++) {
114de80f912SBarry Smith       odiag  = v + 49*diag_offset[i];
115580bdb30SBarry Smith       ierr   = PetscArraycpy(diag,odiag,49);CHKERRQ(ierr);
116a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_7(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
1177b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
118de80f912SBarry Smith       diag  += 49;
119de80f912SBarry Smith     }
120de80f912SBarry Smith     break;
121b01c7715SBarry Smith   default:
122dcca6d9dSJed Brown     ierr = PetscMalloc2(bs,&v_work,bs,&v_pivots);CHKERRQ(ierr);
123de80f912SBarry Smith     for (i=0; i<mbs; i++) {
124de80f912SBarry Smith       odiag  = v + bs2*diag_offset[i];
125580bdb30SBarry Smith       ierr   = PetscArraycpy(diag,odiag,bs2);CHKERRQ(ierr);
1265f8bbccaSHong Zhang       ierr   = PetscKernel_A_gets_inverse_A(bs,diag,v_pivots,v_work,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
1277b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
128de80f912SBarry Smith       diag  += bs2;
129de80f912SBarry Smith     }
130de80f912SBarry Smith     ierr = PetscFree2(v_work,v_pivots);CHKERRQ(ierr);
131b01c7715SBarry Smith   }
132b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
133b01c7715SBarry Smith   PetscFunctionReturn(0);
134b01c7715SBarry Smith }
135b01c7715SBarry Smith 
136e48d15efSToby Isaac PetscErrorCode MatSOR_SeqBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1376d3beeddSMatthew Knepley {
1386d3beeddSMatthew Knepley   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
139e48d15efSToby Isaac   PetscScalar       *x,*work,*w,*workt,*t;
140e48d15efSToby Isaac   const MatScalar   *v,*aa = a->a, *idiag;
141e48d15efSToby Isaac   const PetscScalar *b,*xb;
1425455b99fSToby Isaac   PetscScalar       s[7], xw[7]={0}; /* avoid some compilers thinking xw is uninitialized */
1436d3beeddSMatthew Knepley   PetscErrorCode    ierr;
144e48d15efSToby Isaac   PetscInt          m = a->mbs,i,i2,nz,bs = A->rmap->bs,bs2 = bs*bs,k,j,idx,it;
145c1ac3661SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
146b01c7715SBarry Smith 
147b01c7715SBarry Smith   PetscFunctionBegin;
148b01c7715SBarry Smith   its = its*lits;
149e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
150e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
151e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
152e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
153e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
154b01c7715SBarry Smith 
1550298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
156b01c7715SBarry Smith 
157b2ec919aSToby Isaac   if (!m) PetscFunctionReturn(0);
158b01c7715SBarry Smith   diag  = a->diag;
159b01c7715SBarry Smith   idiag = a->idiag;
160de80f912SBarry Smith   k    = PetscMax(A->rmap->n,A->cmap->n);
161e48d15efSToby Isaac   if (!a->mult_work) {
162f361c04dSBarry Smith     ierr = PetscMalloc1(k+1,&a->mult_work);CHKERRQ(ierr);
163de80f912SBarry Smith   }
1643475c22fSBarry Smith   if (!a->sor_workt) {
165f361c04dSBarry Smith     ierr = PetscMalloc1(k,&a->sor_workt);CHKERRQ(ierr);
166de80f912SBarry Smith   }
167de80f912SBarry Smith   if (!a->sor_work) {
168785e854fSJed Brown     ierr = PetscMalloc1(bs,&a->sor_work);CHKERRQ(ierr);
169de80f912SBarry Smith   }
1703475c22fSBarry Smith   work = a->mult_work;
1713475c22fSBarry Smith   t    = a->sor_workt;
172de80f912SBarry Smith   w    = a->sor_work;
173de80f912SBarry Smith 
174de80f912SBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
175de80f912SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
176de80f912SBarry Smith 
177de80f912SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
178de80f912SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
179e48d15efSToby Isaac       switch (bs) {
180e48d15efSToby Isaac       case 1:
181e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(x,idiag,b);
182e48d15efSToby Isaac         t[0] = b[0];
183e48d15efSToby Isaac         i2     = 1;
184e48d15efSToby Isaac         idiag += 1;
185e48d15efSToby Isaac         for (i=1; i<m; i++) {
186e48d15efSToby Isaac           v  = aa + ai[i];
187e48d15efSToby Isaac           vi = aj + ai[i];
188e48d15efSToby Isaac           nz = diag[i] - ai[i];
189e48d15efSToby Isaac           s[0] = b[i2];
190e48d15efSToby Isaac           for (j=0; j<nz; j++) {
191e48d15efSToby Isaac             xw[0] = x[vi[j]];
192e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
193e48d15efSToby Isaac           }
194e48d15efSToby Isaac           t[i2] = s[0];
195e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
196e48d15efSToby Isaac           x[i2]  = xw[0];
197e48d15efSToby Isaac           idiag += 1;
198e48d15efSToby Isaac           i2    += 1;
199e48d15efSToby Isaac         }
200e48d15efSToby Isaac         break;
201e48d15efSToby Isaac       case 2:
202e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(x,idiag,b);
203e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1];
204e48d15efSToby Isaac         i2     = 2;
205e48d15efSToby Isaac         idiag += 4;
206e48d15efSToby Isaac         for (i=1; i<m; i++) {
207e48d15efSToby Isaac           v  = aa + 4*ai[i];
208e48d15efSToby Isaac           vi = aj + ai[i];
209e48d15efSToby Isaac           nz = diag[i] - ai[i];
210e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
211e48d15efSToby Isaac           for (j=0; j<nz; j++) {
212e48d15efSToby Isaac             idx = 2*vi[j];
213e48d15efSToby Isaac             it  = 4*j;
214e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
215e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
216e48d15efSToby Isaac           }
217e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1];
218e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
219e48d15efSToby Isaac           x[i2]   = xw[0]; x[i2+1] = xw[1];
220e48d15efSToby Isaac           idiag  += 4;
221e48d15efSToby Isaac           i2     += 2;
222e48d15efSToby Isaac         }
223e48d15efSToby Isaac         break;
224e48d15efSToby Isaac       case 3:
225e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(x,idiag,b);
226e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2];
227e48d15efSToby Isaac         i2     = 3;
228e48d15efSToby Isaac         idiag += 9;
229e48d15efSToby Isaac         for (i=1; i<m; i++) {
230e48d15efSToby Isaac           v  = aa + 9*ai[i];
231e48d15efSToby Isaac           vi = aj + ai[i];
232e48d15efSToby Isaac           nz = diag[i] - ai[i];
233e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
234e48d15efSToby Isaac           while (nz--) {
235e48d15efSToby Isaac             idx = 3*(*vi++);
236e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
237e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
238e48d15efSToby Isaac             v  += 9;
239e48d15efSToby Isaac           }
240e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
241e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
242e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
243e48d15efSToby Isaac           idiag  += 9;
244e48d15efSToby Isaac           i2     += 3;
245e48d15efSToby Isaac         }
246e48d15efSToby Isaac         break;
247e48d15efSToby Isaac       case 4:
248e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(x,idiag,b);
249e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3];
250e48d15efSToby Isaac         i2     = 4;
251e48d15efSToby Isaac         idiag += 16;
252e48d15efSToby Isaac         for (i=1; i<m; i++) {
253e48d15efSToby Isaac           v  = aa + 16*ai[i];
254e48d15efSToby Isaac           vi = aj + ai[i];
255e48d15efSToby Isaac           nz = diag[i] - ai[i];
256e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
257e48d15efSToby Isaac           while (nz--) {
258e48d15efSToby Isaac             idx = 4*(*vi++);
259e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
260e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
261e48d15efSToby Isaac             v  += 16;
262e48d15efSToby Isaac           }
263e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2 + 3] = s[3];
264e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
265e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
266e48d15efSToby Isaac           idiag  += 16;
267e48d15efSToby Isaac           i2     += 4;
268e48d15efSToby Isaac         }
269e48d15efSToby Isaac         break;
270e48d15efSToby Isaac       case 5:
271e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(x,idiag,b);
272e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4];
273e48d15efSToby Isaac         i2     = 5;
274e48d15efSToby Isaac         idiag += 25;
275e48d15efSToby Isaac         for (i=1; i<m; i++) {
276e48d15efSToby Isaac           v  = aa + 25*ai[i];
277e48d15efSToby Isaac           vi = aj + ai[i];
278e48d15efSToby Isaac           nz = diag[i] - ai[i];
279e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
280e48d15efSToby Isaac           while (nz--) {
281e48d15efSToby Isaac             idx = 5*(*vi++);
282e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
283e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
284e48d15efSToby Isaac             v  += 25;
285e48d15efSToby Isaac           }
286e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2+3] = s[3]; t[i2+4] = s[4];
287e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
288e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
289e48d15efSToby Isaac           idiag  += 25;
290e48d15efSToby Isaac           i2     += 5;
291e48d15efSToby Isaac         }
292e48d15efSToby Isaac         break;
293e48d15efSToby Isaac       case 6:
294e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(x,idiag,b);
295e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4]; t[5] = b[5];
296e48d15efSToby Isaac         i2     = 6;
297e48d15efSToby Isaac         idiag += 36;
298e48d15efSToby Isaac         for (i=1; i<m; i++) {
299e48d15efSToby Isaac           v  = aa + 36*ai[i];
300e48d15efSToby Isaac           vi = aj + ai[i];
301e48d15efSToby Isaac           nz = diag[i] - ai[i];
302e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
303e48d15efSToby Isaac           while (nz--) {
304e48d15efSToby Isaac             idx = 6*(*vi++);
305e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
306e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
307e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
308e48d15efSToby Isaac             v  += 36;
309e48d15efSToby Isaac           }
310e48d15efSToby Isaac           t[i2]   = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
311e48d15efSToby Isaac           t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5];
312e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
313e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
314e48d15efSToby Isaac           idiag  += 36;
315e48d15efSToby Isaac           i2     += 6;
316e48d15efSToby Isaac         }
317e48d15efSToby Isaac         break;
318e48d15efSToby Isaac       case 7:
319e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x,idiag,b);
320e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2];
321e48d15efSToby Isaac         t[3] = b[3]; t[4] = b[4]; t[5] = b[5]; t[6] = b[6];
322e48d15efSToby Isaac         i2     = 7;
323e48d15efSToby Isaac         idiag += 49;
324e48d15efSToby Isaac         for (i=1; i<m; i++) {
325e48d15efSToby Isaac           v  = aa + 49*ai[i];
326e48d15efSToby Isaac           vi = aj + ai[i];
327e48d15efSToby Isaac           nz = diag[i] - ai[i];
328e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
329e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
330e48d15efSToby Isaac           while (nz--) {
331e48d15efSToby Isaac             idx = 7*(*vi++);
332e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
333e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
334e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
335e48d15efSToby Isaac             v  += 49;
336e48d15efSToby Isaac           }
337e48d15efSToby Isaac           t[i2]   = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
338e48d15efSToby Isaac           t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5]; t[i2+6] = s[6];
339e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
340e48d15efSToby Isaac           x[i2] =   xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
341e48d15efSToby Isaac           x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
342e48d15efSToby Isaac           idiag  += 49;
343e48d15efSToby Isaac           i2     += 7;
344e48d15efSToby Isaac         }
345e48d15efSToby Isaac         break;
346e48d15efSToby Isaac       default:
34796b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,b,idiag,x);
348580bdb30SBarry Smith         ierr = PetscArraycpy(t,b,bs);CHKERRQ(ierr);
349de80f912SBarry Smith         i2     = bs;
350de80f912SBarry Smith         idiag += bs2;
351de80f912SBarry Smith         for (i=1; i<m; i++) {
352de80f912SBarry Smith           v  = aa + bs2*ai[i];
353de80f912SBarry Smith           vi = aj + ai[i];
354de80f912SBarry Smith           nz = diag[i] - ai[i];
355de80f912SBarry Smith 
356580bdb30SBarry Smith           ierr = PetscArraycpy(w,b+i2,bs);CHKERRQ(ierr);
357de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
358de80f912SBarry Smith           workt = work;
359de80f912SBarry Smith           for (j=0; j<nz; j++) {
360580bdb30SBarry Smith             ierr   = PetscArraycpy(workt,x + bs*(*vi++),bs);CHKERRQ(ierr);
361de80f912SBarry Smith             workt += bs;
362de80f912SBarry Smith           }
36396b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
364580bdb30SBarry Smith           ierr = PetscArraycpy(t+i2,w,bs);CHKERRQ(ierr);
36596b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
366de80f912SBarry Smith 
367de80f912SBarry Smith           idiag += bs2;
368de80f912SBarry Smith           i2    += bs;
369de80f912SBarry Smith         }
370e48d15efSToby Isaac         break;
371e48d15efSToby Isaac       }
372de80f912SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
373e48d15efSToby Isaac       ierr = PetscLogFlops(1.0*bs2*a->nz);CHKERRQ(ierr);
374e48d15efSToby Isaac       xb = t;
375de80f912SBarry Smith     }
376e48d15efSToby Isaac     else xb = b;
377de80f912SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
378e48d15efSToby Isaac       idiag = a->idiag+bs2*(a->mbs-1);
379e48d15efSToby Isaac       i2 = bs * (m-1);
380e48d15efSToby Isaac       switch (bs) {
381e48d15efSToby Isaac       case 1:
382e48d15efSToby Isaac         s[0]  = xb[i2];
383e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
384e48d15efSToby Isaac         x[i2] = xw[0];
385e48d15efSToby Isaac         i2   -= 1;
386e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
387e48d15efSToby Isaac           v  = aa + (diag[i]+1);
388e48d15efSToby Isaac           vi = aj + diag[i] + 1;
389e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
390e48d15efSToby Isaac           s[0] = xb[i2];
391e48d15efSToby Isaac           for (j=0; j<nz; j++) {
392e48d15efSToby Isaac             xw[0] = x[vi[j]];
393e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
394e48d15efSToby Isaac           }
395e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
396e48d15efSToby Isaac           x[i2]  = xw[0];
397e48d15efSToby Isaac           idiag -= 1;
398e48d15efSToby Isaac           i2    -= 1;
399e48d15efSToby Isaac         }
400e48d15efSToby Isaac         break;
401e48d15efSToby Isaac       case 2:
402e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1];
403e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
404e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1];
405e48d15efSToby Isaac         i2    -= 2;
406e48d15efSToby Isaac         idiag -= 4;
407e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
408e48d15efSToby Isaac           v  = aa + 4*(diag[i] + 1);
409e48d15efSToby Isaac           vi = aj + diag[i] + 1;
410e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
411e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1];
412e48d15efSToby Isaac           for (j=0; j<nz; j++) {
413e48d15efSToby Isaac             idx = 2*vi[j];
414e48d15efSToby Isaac             it  = 4*j;
415e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
416e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
417e48d15efSToby Isaac           }
418e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
419e48d15efSToby Isaac           x[i2]   = xw[0]; x[i2+1] = xw[1];
420e48d15efSToby Isaac           idiag  -= 4;
421e48d15efSToby Isaac           i2     -= 2;
422e48d15efSToby Isaac         }
423e48d15efSToby Isaac         break;
424e48d15efSToby Isaac       case 3:
425e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2];
426e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
427e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
428e48d15efSToby Isaac         i2    -= 3;
429e48d15efSToby Isaac         idiag -= 9;
430e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
431e48d15efSToby Isaac           v  = aa + 9*(diag[i]+1);
432e48d15efSToby Isaac           vi = aj + diag[i] + 1;
433e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
434e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2];
435e48d15efSToby Isaac           while (nz--) {
436e48d15efSToby Isaac             idx = 3*(*vi++);
437e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
438e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
439e48d15efSToby Isaac             v  += 9;
440e48d15efSToby Isaac           }
441e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
442e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
443e48d15efSToby Isaac           idiag  -= 9;
444e48d15efSToby Isaac           i2     -= 3;
445e48d15efSToby Isaac         }
446e48d15efSToby Isaac         break;
447e48d15efSToby Isaac       case 4:
448e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3];
449e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
450e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
451e48d15efSToby Isaac         i2    -= 4;
452e48d15efSToby Isaac         idiag -= 16;
453e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
454e48d15efSToby Isaac           v  = aa + 16*(diag[i]+1);
455e48d15efSToby Isaac           vi = aj + diag[i] + 1;
456e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
457e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3];
458e48d15efSToby Isaac           while (nz--) {
459e48d15efSToby Isaac             idx = 4*(*vi++);
460e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
461e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
462e48d15efSToby Isaac             v  += 16;
463e48d15efSToby Isaac           }
464e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
465e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
466e48d15efSToby Isaac           idiag  -= 16;
467e48d15efSToby Isaac           i2     -= 4;
468e48d15efSToby Isaac         }
469e48d15efSToby Isaac         break;
470e48d15efSToby Isaac       case 5:
471e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4];
472e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
473e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
474e48d15efSToby Isaac         i2    -= 5;
475e48d15efSToby Isaac         idiag -= 25;
476e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
477e48d15efSToby Isaac           v  = aa + 25*(diag[i]+1);
478e48d15efSToby Isaac           vi = aj + diag[i] + 1;
479e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
480e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4];
481e48d15efSToby Isaac           while (nz--) {
482e48d15efSToby Isaac             idx = 5*(*vi++);
483e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
484e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
485e48d15efSToby Isaac             v  += 25;
486e48d15efSToby Isaac           }
487e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
488e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
489e48d15efSToby Isaac           idiag  -= 25;
490e48d15efSToby Isaac           i2     -= 5;
491e48d15efSToby Isaac         }
492e48d15efSToby Isaac         break;
493e48d15efSToby Isaac       case 6:
494e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5];
495e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
496e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
497e48d15efSToby Isaac         i2    -= 6;
498e48d15efSToby Isaac         idiag -= 36;
499e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
500e48d15efSToby Isaac           v  = aa + 36*(diag[i]+1);
501e48d15efSToby Isaac           vi = aj + diag[i] + 1;
502e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
503e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5];
504e48d15efSToby Isaac           while (nz--) {
505e48d15efSToby Isaac             idx = 6*(*vi++);
506e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
507e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
508e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
509e48d15efSToby Isaac             v  += 36;
510e48d15efSToby Isaac           }
511e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
512e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
513e48d15efSToby Isaac           idiag  -= 36;
514e48d15efSToby Isaac           i2     -= 6;
515e48d15efSToby Isaac         }
516e48d15efSToby Isaac         break;
517e48d15efSToby Isaac       case 7:
518e48d15efSToby Isaac         s[0] = xb[i2];   s[1] = xb[i2+1]; s[2] = xb[i2+2];
519e48d15efSToby Isaac         s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6];
520e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x,idiag,b);
521e48d15efSToby Isaac         x[i2]   = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
522e48d15efSToby Isaac         x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
523e48d15efSToby Isaac         i2    -= 7;
524e48d15efSToby Isaac         idiag -= 49;
525e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
526e48d15efSToby Isaac           v  = aa + 49*(diag[i]+1);
527e48d15efSToby Isaac           vi = aj + diag[i] + 1;
528e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
529e48d15efSToby Isaac           s[0] = xb[i2];   s[1] = xb[i2+1]; s[2] = xb[i2+2];
530e48d15efSToby Isaac           s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6];
531e48d15efSToby Isaac           while (nz--) {
532e48d15efSToby Isaac             idx = 7*(*vi++);
533e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
534e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
535e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
536e48d15efSToby Isaac             v  += 49;
537e48d15efSToby Isaac           }
538e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
539e48d15efSToby Isaac           x[i2] =   xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
540e48d15efSToby Isaac           x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
541e48d15efSToby Isaac           idiag  -= 49;
542e48d15efSToby Isaac           i2     -= 7;
543e48d15efSToby Isaac         }
544e48d15efSToby Isaac         break;
545e48d15efSToby Isaac       default:
546580bdb30SBarry Smith         ierr  = PetscArraycpy(w,xb+i2,bs);CHKERRQ(ierr);
54796b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
548de80f912SBarry Smith         i2    -= bs;
549e48d15efSToby Isaac         idiag -= bs2;
550de80f912SBarry Smith         for (i=m-2; i>=0; i--) {
551de80f912SBarry Smith           v  = aa + bs2*(diag[i]+1);
552de80f912SBarry Smith           vi = aj + diag[i] + 1;
553de80f912SBarry Smith           nz = ai[i+1] - diag[i] - 1;
554de80f912SBarry Smith 
555580bdb30SBarry Smith           ierr = PetscArraycpy(w,xb+i2,bs);CHKERRQ(ierr);
556de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
557de80f912SBarry Smith           workt = work;
558de80f912SBarry Smith           for (j=0; j<nz; j++) {
559580bdb30SBarry Smith             ierr   = PetscArraycpy(workt,x + bs*(*vi++),bs);CHKERRQ(ierr);
560de80f912SBarry Smith             workt += bs;
561de80f912SBarry Smith           }
56296b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
56396b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
564e48d15efSToby Isaac 
565de80f912SBarry Smith           idiag -= bs2;
566de80f912SBarry Smith           i2    -= bs;
567de80f912SBarry Smith         }
568e48d15efSToby Isaac         break;
569e48d15efSToby Isaac       }
570de80f912SBarry Smith       ierr = PetscLogFlops(1.0*bs2*(a->nz));CHKERRQ(ierr);
571de80f912SBarry Smith     }
572e48d15efSToby Isaac     its--;
573e48d15efSToby Isaac   }
574e48d15efSToby Isaac   while (its--) {
575e48d15efSToby Isaac     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
576e48d15efSToby Isaac       idiag = a->idiag;
577e48d15efSToby Isaac       i2 = 0;
578e48d15efSToby Isaac       switch (bs) {
579e48d15efSToby Isaac       case 1:
580e48d15efSToby Isaac         for (i=0; i<m; i++) {
581e48d15efSToby Isaac           v  = aa + ai[i];
582e48d15efSToby Isaac           vi = aj + ai[i];
583e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
584e48d15efSToby Isaac           s[0] = b[i2];
585e48d15efSToby Isaac           for (j=0; j<nz; j++) {
586e48d15efSToby Isaac             xw[0] = x[vi[j]];
587e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
588e48d15efSToby Isaac           }
589e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
590e48d15efSToby Isaac           x[i2] += xw[0];
591e48d15efSToby Isaac           idiag += 1;
592e48d15efSToby Isaac           i2    += 1;
593e48d15efSToby Isaac         }
594e48d15efSToby Isaac         break;
595e48d15efSToby Isaac       case 2:
596e48d15efSToby Isaac         for (i=0; i<m; i++) {
597e48d15efSToby Isaac           v  = aa + 4*ai[i];
598e48d15efSToby Isaac           vi = aj + ai[i];
599e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
600e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
601e48d15efSToby Isaac           for (j=0; j<nz; j++) {
602e48d15efSToby Isaac             idx = 2*vi[j];
603e48d15efSToby Isaac             it  = 4*j;
604e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
605e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
606e48d15efSToby Isaac           }
607e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
608e48d15efSToby Isaac           x[i2]  += xw[0]; x[i2+1] += xw[1];
609e48d15efSToby Isaac           idiag  += 4;
610e48d15efSToby Isaac           i2     += 2;
611e48d15efSToby Isaac         }
612e48d15efSToby Isaac         break;
613e48d15efSToby Isaac       case 3:
614e48d15efSToby Isaac         for (i=0; i<m; i++) {
615e48d15efSToby Isaac           v  = aa + 9*ai[i];
616e48d15efSToby Isaac           vi = aj + ai[i];
617e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
618e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
619e48d15efSToby Isaac           while (nz--) {
620e48d15efSToby Isaac             idx = 3*(*vi++);
621e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
622e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
623e48d15efSToby Isaac             v  += 9;
624e48d15efSToby Isaac           }
625e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
626e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
627e48d15efSToby Isaac           idiag  += 9;
628e48d15efSToby Isaac           i2     += 3;
629e48d15efSToby Isaac         }
630e48d15efSToby Isaac         break;
631e48d15efSToby Isaac       case 4:
632e48d15efSToby Isaac         for (i=0; i<m; i++) {
633e48d15efSToby Isaac           v  = aa + 16*ai[i];
634e48d15efSToby Isaac           vi = aj + ai[i];
635e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
636e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
637e48d15efSToby Isaac           while (nz--) {
638e48d15efSToby Isaac             idx = 4*(*vi++);
639e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
640e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
641e48d15efSToby Isaac             v  += 16;
642e48d15efSToby Isaac           }
643e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
644e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3];
645e48d15efSToby Isaac           idiag  += 16;
646e48d15efSToby Isaac           i2     += 4;
647e48d15efSToby Isaac         }
648e48d15efSToby Isaac         break;
649e48d15efSToby Isaac       case 5:
650e48d15efSToby Isaac         for (i=0; i<m; i++) {
651e48d15efSToby Isaac           v  = aa + 25*ai[i];
652e48d15efSToby Isaac           vi = aj + ai[i];
653e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
654e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
655e48d15efSToby Isaac           while (nz--) {
656e48d15efSToby Isaac             idx = 5*(*vi++);
657e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
658e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
659e48d15efSToby Isaac             v  += 25;
660e48d15efSToby Isaac           }
661e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
662e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4];
663e48d15efSToby Isaac           idiag  += 25;
664e48d15efSToby Isaac           i2     += 5;
665e48d15efSToby Isaac         }
666e48d15efSToby Isaac         break;
667e48d15efSToby Isaac       case 6:
668e48d15efSToby Isaac         for (i=0; i<m; i++) {
669e48d15efSToby Isaac           v  = aa + 36*ai[i];
670e48d15efSToby Isaac           vi = aj + ai[i];
671e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
672e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
673e48d15efSToby Isaac           while (nz--) {
674e48d15efSToby Isaac             idx = 6*(*vi++);
675e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
676e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
677e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
678e48d15efSToby Isaac             v  += 36;
679e48d15efSToby Isaac           }
680e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
681e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
682e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5];
683e48d15efSToby Isaac           idiag  += 36;
684e48d15efSToby Isaac           i2     += 6;
685e48d15efSToby Isaac         }
686e48d15efSToby Isaac         break;
687e48d15efSToby Isaac       case 7:
688e48d15efSToby Isaac         for (i=0; i<m; i++) {
689e48d15efSToby Isaac           v  = aa + 49*ai[i];
690e48d15efSToby Isaac           vi = aj + ai[i];
691e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
692e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
693e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
694e48d15efSToby Isaac           while (nz--) {
695e48d15efSToby Isaac             idx = 7*(*vi++);
696e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
697e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
698e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
699e48d15efSToby Isaac             v  += 49;
700e48d15efSToby Isaac           }
701e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
702e48d15efSToby Isaac           x[i2]   += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
703e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6];
704e48d15efSToby Isaac           idiag  += 49;
705e48d15efSToby Isaac           i2     += 7;
706e48d15efSToby Isaac         }
707e48d15efSToby Isaac         break;
708e48d15efSToby Isaac       default:
709e48d15efSToby Isaac         for (i=0; i<m; i++) {
710e48d15efSToby Isaac           v  = aa + bs2*ai[i];
711e48d15efSToby Isaac           vi = aj + ai[i];
712e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
713e48d15efSToby Isaac 
714580bdb30SBarry Smith           ierr = PetscArraycpy(w,b+i2,bs);CHKERRQ(ierr);
715e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
716e48d15efSToby Isaac           workt = work;
717e48d15efSToby Isaac           for (j=0; j<nz; j++) {
718580bdb30SBarry Smith             ierr   = PetscArraycpy(workt,x + bs*(*vi++),bs);CHKERRQ(ierr);
719e48d15efSToby Isaac             workt += bs;
720e48d15efSToby Isaac           }
721e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
722e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2);
723e48d15efSToby Isaac 
724e48d15efSToby Isaac           idiag += bs2;
725e48d15efSToby Isaac           i2    += bs;
726e48d15efSToby Isaac         }
727e48d15efSToby Isaac         break;
728e48d15efSToby Isaac       }
729e48d15efSToby Isaac       ierr = PetscLogFlops(2.0*bs2*a->nz);CHKERRQ(ierr);
730e48d15efSToby Isaac     }
731e48d15efSToby Isaac     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
732e48d15efSToby Isaac       idiag = a->idiag+bs2*(a->mbs-1);
733e48d15efSToby Isaac       i2 = bs * (m-1);
734e48d15efSToby Isaac       switch (bs) {
735e48d15efSToby Isaac       case 1:
736e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
737e48d15efSToby Isaac           v  = aa + ai[i];
738e48d15efSToby Isaac           vi = aj + ai[i];
739e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
740e48d15efSToby Isaac           s[0] = b[i2];
741e48d15efSToby Isaac           for (j=0; j<nz; j++) {
742e48d15efSToby Isaac             xw[0] = x[vi[j]];
743e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
744e48d15efSToby Isaac           }
745e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
746e48d15efSToby Isaac           x[i2] += xw[0];
747e48d15efSToby Isaac           idiag -= 1;
748e48d15efSToby Isaac           i2    -= 1;
749e48d15efSToby Isaac         }
750e48d15efSToby Isaac         break;
751e48d15efSToby Isaac       case 2:
752e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
753e48d15efSToby Isaac           v  = aa + 4*ai[i];
754e48d15efSToby Isaac           vi = aj + ai[i];
755e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
756e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
757e48d15efSToby Isaac           for (j=0; j<nz; j++) {
758e48d15efSToby Isaac             idx = 2*vi[j];
759e48d15efSToby Isaac             it  = 4*j;
760e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
761e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
762e48d15efSToby Isaac           }
763e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
764e48d15efSToby Isaac           x[i2]  += xw[0]; x[i2+1] += xw[1];
765e48d15efSToby Isaac           idiag  -= 4;
766e48d15efSToby Isaac           i2     -= 2;
767e48d15efSToby Isaac         }
768e48d15efSToby Isaac         break;
769e48d15efSToby Isaac       case 3:
770e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
771e48d15efSToby Isaac           v  = aa + 9*ai[i];
772e48d15efSToby Isaac           vi = aj + ai[i];
773e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
774e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
775e48d15efSToby Isaac           while (nz--) {
776e48d15efSToby Isaac             idx = 3*(*vi++);
777e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
778e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
779e48d15efSToby Isaac             v  += 9;
780e48d15efSToby Isaac           }
781e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
782e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
783e48d15efSToby Isaac           idiag  -= 9;
784e48d15efSToby Isaac           i2     -= 3;
785e48d15efSToby Isaac         }
786e48d15efSToby Isaac         break;
787e48d15efSToby Isaac       case 4:
788e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
789e48d15efSToby Isaac           v  = aa + 16*ai[i];
790e48d15efSToby Isaac           vi = aj + ai[i];
791e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
792e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
793e48d15efSToby Isaac           while (nz--) {
794e48d15efSToby Isaac             idx = 4*(*vi++);
795e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
796e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
797e48d15efSToby Isaac             v  += 16;
798e48d15efSToby Isaac           }
799e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
800e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3];
801e48d15efSToby Isaac           idiag  -= 16;
802e48d15efSToby Isaac           i2     -= 4;
803e48d15efSToby Isaac         }
804e48d15efSToby Isaac         break;
805e48d15efSToby Isaac       case 5:
806e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
807e48d15efSToby Isaac           v  = aa + 25*ai[i];
808e48d15efSToby Isaac           vi = aj + ai[i];
809e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
810e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
811e48d15efSToby Isaac           while (nz--) {
812e48d15efSToby Isaac             idx = 5*(*vi++);
813e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
814e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
815e48d15efSToby Isaac             v  += 25;
816e48d15efSToby Isaac           }
817e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
818e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4];
819e48d15efSToby Isaac           idiag  -= 25;
820e48d15efSToby Isaac           i2     -= 5;
821e48d15efSToby Isaac         }
822e48d15efSToby Isaac         break;
823e48d15efSToby Isaac       case 6:
824e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
825e48d15efSToby Isaac           v  = aa + 36*ai[i];
826e48d15efSToby Isaac           vi = aj + ai[i];
827e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
828e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
829e48d15efSToby Isaac           while (nz--) {
830e48d15efSToby Isaac             idx = 6*(*vi++);
831e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
832e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
833e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
834e48d15efSToby Isaac             v  += 36;
835e48d15efSToby Isaac           }
836e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
837e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
838e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5];
839e48d15efSToby Isaac           idiag  -= 36;
840e48d15efSToby Isaac           i2     -= 6;
841e48d15efSToby Isaac         }
842e48d15efSToby Isaac         break;
843e48d15efSToby Isaac       case 7:
844e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
845e48d15efSToby Isaac           v  = aa + 49*ai[i];
846e48d15efSToby Isaac           vi = aj + ai[i];
847e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
848e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
849e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
850e48d15efSToby Isaac           while (nz--) {
851e48d15efSToby Isaac             idx = 7*(*vi++);
852e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
853e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
854e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
855e48d15efSToby Isaac             v  += 49;
856e48d15efSToby Isaac           }
857e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
858e48d15efSToby Isaac           x[i2] +=   xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
859e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6];
860e48d15efSToby Isaac           idiag  -= 49;
861e48d15efSToby Isaac           i2     -= 7;
862e48d15efSToby Isaac         }
863e48d15efSToby Isaac         break;
864e48d15efSToby Isaac       default:
865e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
866e48d15efSToby Isaac           v  = aa + bs2*ai[i];
867e48d15efSToby Isaac           vi = aj + ai[i];
868e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
869e48d15efSToby Isaac 
870580bdb30SBarry Smith           ierr = PetscArraycpy(w,b+i2,bs);CHKERRQ(ierr);
871e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
872e48d15efSToby Isaac           workt = work;
873e48d15efSToby Isaac           for (j=0; j<nz; j++) {
874580bdb30SBarry Smith             ierr   = PetscArraycpy(workt,x + bs*(*vi++),bs);CHKERRQ(ierr);
875e48d15efSToby Isaac             workt += bs;
876e48d15efSToby Isaac           }
877e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
878e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2);
879e48d15efSToby Isaac 
880e48d15efSToby Isaac           idiag -= bs2;
881e48d15efSToby Isaac           i2    -= bs;
882e48d15efSToby Isaac         }
883e48d15efSToby Isaac         break;
884e48d15efSToby Isaac       }
885e48d15efSToby Isaac       ierr = PetscLogFlops(2.0*bs2*(a->nz));CHKERRQ(ierr);
886e48d15efSToby Isaac     }
887e48d15efSToby Isaac   }
888de80f912SBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
889de80f912SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
890de80f912SBarry Smith   PetscFunctionReturn(0);
891de80f912SBarry Smith }
892de80f912SBarry Smith 
893e48d15efSToby Isaac 
894af674e45SBarry Smith /*
89581824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
896af674e45SBarry Smith */
897af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
898af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
899af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
900af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
901af674e45SBarry Smith #endif
902af674e45SBarry Smith 
9038cc058d9SJed Brown PETSC_EXTERN void matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
904af674e45SBarry Smith {
905af674e45SBarry Smith   Mat               A  = *AA;
906af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
907c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
908c1ac3661SBarry Smith   PetscInt          *ai    =a->i,*ailen=a->ilen;
90917ec6a02SBarry Smith   PetscInt          *aj    =a->j,stepval,lastcol = -1;
910f15d580aSBarry Smith   const PetscScalar *value = v;
9114bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
912*70990e77SSatish Balay   PetscErrorCode    ierr;
913af674e45SBarry Smith 
914af674e45SBarry Smith   PetscFunctionBegin;
915ce94432eSBarry Smith   if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
916af674e45SBarry Smith   stepval = (n-1)*4;
917af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
918af674e45SBarry Smith     row  = im[k];
919af674e45SBarry Smith     rp   = aj + ai[row];
920af674e45SBarry Smith     ap   = aa + 16*ai[row];
921af674e45SBarry Smith     nrow = ailen[row];
922af674e45SBarry Smith     low  = 0;
92317ec6a02SBarry Smith     high = nrow;
924af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
925af674e45SBarry Smith       col = in[l];
926db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
927db4deed7SKarl Rupp       else                high = nrow;
92817ec6a02SBarry Smith       lastcol = col;
9291e3347e8SBarry Smith       value   = v + k*(stepval+4 + l)*4;
930af674e45SBarry Smith       while (high-low > 7) {
931af674e45SBarry Smith         t = (low+high)/2;
932af674e45SBarry Smith         if (rp[t] > col) high = t;
933af674e45SBarry Smith         else             low  = t;
934af674e45SBarry Smith       }
935af674e45SBarry Smith       for (i=low; i<high; i++) {
936af674e45SBarry Smith         if (rp[i] > col) break;
937af674e45SBarry Smith         if (rp[i] == col) {
938af674e45SBarry Smith           bap = ap +  16*i;
939af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
940af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
941af674e45SBarry Smith               bap[jj] += *value++;
942af674e45SBarry Smith             }
943af674e45SBarry Smith           }
944af674e45SBarry Smith           goto noinsert2;
945af674e45SBarry Smith         }
946af674e45SBarry Smith       }
947af674e45SBarry Smith       N = nrow++ - 1;
94817ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
949af674e45SBarry Smith       /* shift up all the later entries in this row */
950af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
951af674e45SBarry Smith         rp[ii+1] = rp[ii];
952*70990e77SSatish Balay         ierr = PetscArraycpy(ap+16*(ii+1),ap+16*(ii),16);CHKERRV(ierr);
953af674e45SBarry Smith       }
954af674e45SBarry Smith       if (N >= i) {
955*70990e77SSatish Balay         ierr = PetscArrayzero(ap+16*i,16);CHKERRV(ierr);
956af674e45SBarry Smith       }
957af674e45SBarry Smith       rp[i] = col;
958af674e45SBarry Smith       bap   = ap +  16*i;
959af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
960af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
961af674e45SBarry Smith           bap[jj] = *value++;
962af674e45SBarry Smith         }
963af674e45SBarry Smith       }
964af674e45SBarry Smith       noinsert2:;
965af674e45SBarry Smith       low = i;
966af674e45SBarry Smith     }
967af674e45SBarry Smith     ailen[row] = nrow;
968af674e45SBarry Smith   }
969be1d678aSKris Buschelman   PetscFunctionReturnVoid();
970af674e45SBarry Smith }
971af674e45SBarry Smith 
972af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
973af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
974af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
975af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
976af674e45SBarry Smith #endif
977af674e45SBarry Smith 
9788cc058d9SJed Brown PETSC_EXTERN void matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
979af674e45SBarry Smith {
980af674e45SBarry Smith   Mat         A  = *AA;
981af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
982580bdb30SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,N,n = *nn,m = *mm;
983c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
984c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
98517ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
986af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
987*70990e77SSatish Balay   PetscErrorCode ierr;
988af674e45SBarry Smith 
989af674e45SBarry Smith   PetscFunctionBegin;
990af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
991af674e45SBarry Smith     row  = im[k]; brow = row/4;
992af674e45SBarry Smith     rp   = aj + ai[brow];
993af674e45SBarry Smith     ap   = aa + 16*ai[brow];
994af674e45SBarry Smith     nrow = ailen[brow];
995af674e45SBarry Smith     low  = 0;
99617ec6a02SBarry Smith     high = nrow;
997af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
998af674e45SBarry Smith       col   = in[l]; bcol = col/4;
999af674e45SBarry Smith       ridx  = row % 4; cidx = col % 4;
1000af674e45SBarry Smith       value = v[l + k*n];
1001db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
1002db4deed7SKarl Rupp       else                high = nrow;
100317ec6a02SBarry Smith       lastcol = col;
1004af674e45SBarry Smith       while (high-low > 7) {
1005af674e45SBarry Smith         t = (low+high)/2;
1006af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1007af674e45SBarry Smith         else              low  = t;
1008af674e45SBarry Smith       }
1009af674e45SBarry Smith       for (i=low; i<high; i++) {
1010af674e45SBarry Smith         if (rp[i] > bcol) break;
1011af674e45SBarry Smith         if (rp[i] == bcol) {
1012af674e45SBarry Smith           bap   = ap +  16*i + 4*cidx + ridx;
1013af674e45SBarry Smith           *bap += value;
1014af674e45SBarry Smith           goto noinsert1;
1015af674e45SBarry Smith         }
1016af674e45SBarry Smith       }
1017af674e45SBarry Smith       N = nrow++ - 1;
101817ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1019af674e45SBarry Smith       /* shift up all the later entries in this row */
1020*70990e77SSatish Balay       ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRV(ierr);
1021*70990e77SSatish Balay       ierr = PetscArraymove(ap+16*i+16,ap+16*i,16*(N-i+1));CHKERRV(ierr);
1022*70990e77SSatish Balay       ierr = PetscArrayzero(ap+16*i,16);CHKERRV(ierr);
1023af674e45SBarry Smith       rp[i]                    = bcol;
1024af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1025af674e45SBarry Smith noinsert1:;
1026af674e45SBarry Smith       low = i;
1027af674e45SBarry Smith     }
1028af674e45SBarry Smith     ailen[brow] = nrow;
1029af674e45SBarry Smith   }
1030be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1031af674e45SBarry Smith }
1032af674e45SBarry Smith 
1033be5855fcSBarry Smith /*
1034be5855fcSBarry Smith      Checks for missing diagonals
1035be5855fcSBarry Smith */
1036ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
1037be5855fcSBarry Smith {
1038be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10396849ba73SBarry Smith   PetscErrorCode ierr;
10407734d3b5SMatthew G. Knepley   PetscInt       *diag,*ii = a->i,i;
1041be5855fcSBarry Smith 
1042be5855fcSBarry Smith   PetscFunctionBegin;
1043c4992f7dSBarry Smith   ierr     = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
10442af78befSBarry Smith   *missing = PETSC_FALSE;
10457734d3b5SMatthew G. Knepley   if (A->rmap->n > 0 && !ii) {
10462efa7f71SHong Zhang     *missing = PETSC_TRUE;
10472efa7f71SHong Zhang     if (d) *d = 0;
1048994fe344SLisandro Dalcin     ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr);
10492efa7f71SHong Zhang   } else {
1050883fce79SBarry Smith     diag = a->diag;
10510e8e8aceSBarry Smith     for (i=0; i<a->mbs; i++) {
10527734d3b5SMatthew G. Knepley       if (diag[i] >= ii[i+1]) {
10532af78befSBarry Smith         *missing = PETSC_TRUE;
10542af78befSBarry Smith         if (d) *d = i;
1055994fe344SLisandro Dalcin         ierr = PetscInfo1(A,"Matrix is missing block diagonal number %D\n",i);CHKERRQ(ierr);
1056358d2f5dSShri Abhyankar         break;
10572efa7f71SHong Zhang       }
1058be5855fcSBarry Smith     }
1059be5855fcSBarry Smith   }
1060be5855fcSBarry Smith   PetscFunctionReturn(0);
1061be5855fcSBarry Smith }
1062be5855fcSBarry Smith 
1063dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1064de6a44a3SBarry Smith {
1065de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10666849ba73SBarry Smith   PetscErrorCode ierr;
106709f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1068de6a44a3SBarry Smith 
10693a40ed3dSBarry Smith   PetscFunctionBegin;
107009f38230SBarry Smith   if (!a->diag) {
1071785e854fSJed Brown     ierr         = PetscMalloc1(m,&a->diag);CHKERRQ(ierr);
10723bb1ff40SBarry Smith     ierr         = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr);
10734fd072dbSBarry Smith     a->free_diag = PETSC_TRUE;
107409f38230SBarry Smith   }
10757fc0212eSBarry Smith   for (i=0; i<m; i++) {
107609f38230SBarry Smith     a->diag[i] = a->i[i+1];
1077de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1078de6a44a3SBarry Smith       if (a->j[j] == i) {
107909f38230SBarry Smith         a->diag[i] = j;
1080de6a44a3SBarry Smith         break;
1081de6a44a3SBarry Smith       }
1082de6a44a3SBarry Smith     }
1083de6a44a3SBarry Smith   }
10843a40ed3dSBarry Smith   PetscFunctionReturn(0);
1085de6a44a3SBarry Smith }
10862593348eSBarry Smith 
10872593348eSBarry Smith 
10881a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool  *done)
10893b2fbd54SBarry Smith {
10903b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1091dfbe8321SBarry Smith   PetscErrorCode ierr;
10921a83f524SJed Brown   PetscInt       i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt;
10931a83f524SJed Brown   PetscInt       **ia = (PetscInt**)inia,**ja = (PetscInt**)inja;
10943b2fbd54SBarry Smith 
10953a40ed3dSBarry Smith   PetscFunctionBegin;
10963b2fbd54SBarry Smith   *nn = n;
10973a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
10983b2fbd54SBarry Smith   if (symmetric) {
10992462f5fdSStefano Zampini     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,PETSC_TRUE,0,0,&tia,&tja);CHKERRQ(ierr);
1100553b3c51SBarry Smith     nz   = tia[n];
11013b2fbd54SBarry Smith   } else {
11028f7157efSSatish Balay     tia = a->i; tja = a->j;
11033b2fbd54SBarry Smith   }
11043b2fbd54SBarry Smith 
1105ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1106ecc77c7aSBarry Smith     (*nn) *= bs;
11078f7157efSSatish Balay     /* malloc & create the natural set of indices */
1108785e854fSJed Brown     ierr = PetscMalloc1((n+1)*bs,ia);CHKERRQ(ierr);
11099985e31cSBarry Smith     if (n) {
11102462f5fdSStefano Zampini       (*ia)[0] = oshift;
1111ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1112ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1113ecc77c7aSBarry Smith       }
11149985e31cSBarry Smith     }
1115ecc77c7aSBarry Smith 
1116ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1117ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1118ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1119ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
11208f7157efSSatish Balay       }
11218f7157efSSatish Balay     }
11229985e31cSBarry Smith     if (n) {
1123ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
11249985e31cSBarry Smith     }
1125ecc77c7aSBarry Smith 
11261a83f524SJed Brown     if (inja) {
1127785e854fSJed Brown       ierr = PetscMalloc1(nz*bs*bs,ja);CHKERRQ(ierr);
11289985e31cSBarry Smith       cnt = 0;
11299985e31cSBarry Smith       for (i=0; i<n; i++) {
11309985e31cSBarry Smith         for (j=0; j<bs; j++) {
11319985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
11329985e31cSBarry Smith             for (l=0; l<bs; l++) {
11339985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
11349985e31cSBarry Smith             }
11359985e31cSBarry Smith           }
11369985e31cSBarry Smith         }
11379985e31cSBarry Smith       }
11389985e31cSBarry Smith     }
11399985e31cSBarry Smith 
11408f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
11418f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
11428f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
11438f7157efSSatish Balay     }
1144f6d58c54SBarry Smith   } else if (oshift == 1) {
1145715a17b5SBarry Smith     if (symmetric) {
1146a2ea699eSBarry Smith       nz = tia[A->rmap->n/bs];
1147715a17b5SBarry Smith       /*  add 1 to i and j indices */
1148715a17b5SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1;
1149715a17b5SBarry Smith       *ia = tia;
1150715a17b5SBarry Smith       if (ja) {
1151715a17b5SBarry Smith         for (i=0; i<nz; i++) tja[i] = tja[i] + 1;
1152715a17b5SBarry Smith         *ja = tja;
1153715a17b5SBarry Smith       }
1154715a17b5SBarry Smith     } else {
1155a2ea699eSBarry Smith       nz = a->i[A->rmap->n/bs];
1156f6d58c54SBarry Smith       /* malloc space and  add 1 to i and j indices */
1157854ce69bSBarry Smith       ierr = PetscMalloc1(A->rmap->n/bs+1,ia);CHKERRQ(ierr);
1158f6d58c54SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1;
1159f6d58c54SBarry Smith       if (ja) {
1160785e854fSJed Brown         ierr = PetscMalloc1(nz,ja);CHKERRQ(ierr);
1161f6d58c54SBarry Smith         for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1;
1162f6d58c54SBarry Smith       }
1163715a17b5SBarry Smith     }
11648f7157efSSatish Balay   } else {
11658f7157efSSatish Balay     *ia = tia;
1166ecc77c7aSBarry Smith     if (ja) *ja = tja;
11678f7157efSSatish Balay   }
11683a40ed3dSBarry Smith   PetscFunctionReturn(0);
11693b2fbd54SBarry Smith }
11703b2fbd54SBarry Smith 
11711a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
11723b2fbd54SBarry Smith {
11736849ba73SBarry Smith   PetscErrorCode ierr;
11743b2fbd54SBarry Smith 
11753a40ed3dSBarry Smith   PetscFunctionBegin;
11763a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1177715a17b5SBarry Smith   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
1178606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
11799985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
11803b2fbd54SBarry Smith   }
11813a40ed3dSBarry Smith   PetscFunctionReturn(0);
11823b2fbd54SBarry Smith }
11833b2fbd54SBarry Smith 
1184dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
11852d61bbb3SSatish Balay {
11862d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1187dfbe8321SBarry Smith   PetscErrorCode ierr;
11882d61bbb3SSatish Balay 
1189433994e6SBarry Smith   PetscFunctionBegin;
1190aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1191d0f46423SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz);
11922d61bbb3SSatish Balay #endif
1193e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
11946bf464f9SBarry Smith   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
11956bf464f9SBarry Smith   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
11964fd072dbSBarry Smith   if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);}
119705b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
11984fd072dbSBarry Smith   if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);}
119905b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
120005b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1201f361c04dSBarry Smith   ierr = PetscFree(a->sor_workt);CHKERRQ(ierr);
1202de80f912SBarry Smith   ierr = PetscFree(a->sor_work);CHKERRQ(ierr);
12036bf464f9SBarry Smith   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
120405b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
1205cd6b891eSBarry Smith   ierr = PetscFree2(a->compressedrow.i,a->compressedrow.rindex);CHKERRQ(ierr);
1206c4319e64SHong Zhang 
12076bf464f9SBarry Smith   ierr = MatDestroy(&a->sbaijMat);CHKERRQ(ierr);
12086bf464f9SBarry Smith   ierr = MatDestroy(&a->parent);CHKERRQ(ierr);
1209bf0cc555SLisandro Dalcin   ierr = PetscFree(A->data);CHKERRQ(ierr);
1210901853e0SKris Buschelman 
1211dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
1212bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatInvertBlockDiagonal_C",NULL);CHKERRQ(ierr);
1213bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1214bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1215bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr);
1216bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C",NULL);CHKERRQ(ierr);
1217bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C",NULL);CHKERRQ(ierr);
1218bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1219bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1220bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqbstrm_C",NULL);CHKERRQ(ierr);
1221bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatIsTranspose_C",NULL);CHKERRQ(ierr);
12227ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
1223c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_hypre_C",NULL);CHKERRQ(ierr);
12247ea3e4caSstefano_zampini #endif
1225c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_is_C",NULL);CHKERRQ(ierr);
122675d48cdbSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_is_seqaij_C",NULL);CHKERRQ(ierr);
12272d61bbb3SSatish Balay   PetscFunctionReturn(0);
12282d61bbb3SSatish Balay }
12292d61bbb3SSatish Balay 
1230ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscBool flg)
12312d61bbb3SSatish Balay {
12322d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
123363ba0a88SBarry Smith   PetscErrorCode ierr;
12342d61bbb3SSatish Balay 
12352d61bbb3SSatish Balay   PetscFunctionBegin;
1236aa275fccSKris Buschelman   switch (op) {
1237aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
12384e0d8c25SBarry Smith     a->roworiented = flg;
1239aa275fccSKris Buschelman     break;
1240a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1241a9817697SBarry Smith     a->keepnonzeropattern = flg;
1242aa275fccSKris Buschelman     break;
1243512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1244512a5fc5SBarry Smith     a->nonew = (flg ? 0 : 1);
1245aa275fccSKris Buschelman     break;
1246aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12474e0d8c25SBarry Smith     a->nonew = (flg ? -1 : 0);
1248aa275fccSKris Buschelman     break;
1249aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
12504e0d8c25SBarry Smith     a->nonew = (flg ? -2 : 0);
1251aa275fccSKris Buschelman     break;
125228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
125328b2fa4aSMatthew Knepley     a->nounused = (flg ? -1 : 0);
125428b2fa4aSMatthew Knepley     break;
12554e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1256aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1257aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1258290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1259aa275fccSKris Buschelman     break;
12605021d80fSJed Brown   case MAT_SPD:
126177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
126277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12639a4540c5SBarry Smith   case MAT_HERMITIAN:
12649a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1265c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1266672ba085SHong Zhang   case MAT_STRUCTURE_ONLY:
12675021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
126877e54ba9SKris Buschelman     break;
1269aa275fccSKris Buschelman   default:
1270e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
12712d61bbb3SSatish Balay   }
12722d61bbb3SSatish Balay   PetscFunctionReturn(0);
12732d61bbb3SSatish Balay }
12742d61bbb3SSatish Balay 
127552768537SHong Zhang /* used for both SeqBAIJ and SeqSBAIJ matrices */
127652768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ_private(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v,PetscInt *ai,PetscInt *aj,PetscScalar *aa)
12772d61bbb3SSatish Balay {
12786849ba73SBarry Smith   PetscErrorCode ierr;
127952768537SHong Zhang   PetscInt       itmp,i,j,k,M,bn,bp,*idx_i,bs,bs2;
128052768537SHong Zhang   MatScalar      *aa_i;
128187828ca2SBarry Smith   PetscScalar    *v_i;
12822d61bbb3SSatish Balay 
12832d61bbb3SSatish Balay   PetscFunctionBegin;
1284d0f46423SBarry Smith   bs  = A->rmap->bs;
128552768537SHong Zhang   bs2 = bs*bs;
1286e32f2f54SBarry Smith   if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
12872d61bbb3SSatish Balay 
12882d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
12892d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
12902d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
12912d61bbb3SSatish Balay   *nz = bs*M;
12922d61bbb3SSatish Balay 
12932d61bbb3SSatish Balay   if (v) {
12942d61bbb3SSatish Balay     *v = 0;
12952d61bbb3SSatish Balay     if (*nz) {
1296854ce69bSBarry Smith       ierr = PetscMalloc1(*nz,v);CHKERRQ(ierr);
12972d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
12982d61bbb3SSatish Balay         v_i  = *v + i*bs;
12992d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
130026fbe8dcSKarl Rupp         for (j=bp,k=0; j<bs2; j+=bs,k++) v_i[k] = aa_i[j];
13012d61bbb3SSatish Balay       }
13022d61bbb3SSatish Balay     }
13032d61bbb3SSatish Balay   }
13042d61bbb3SSatish Balay 
13052d61bbb3SSatish Balay   if (idx) {
13062d61bbb3SSatish Balay     *idx = 0;
13072d61bbb3SSatish Balay     if (*nz) {
1308854ce69bSBarry Smith       ierr = PetscMalloc1(*nz,idx);CHKERRQ(ierr);
13092d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13102d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13112d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
131226fbe8dcSKarl Rupp         for (j=0; j<bs; j++) idx_i[j] = itmp++;
13132d61bbb3SSatish Balay       }
13142d61bbb3SSatish Balay     }
13152d61bbb3SSatish Balay   }
13162d61bbb3SSatish Balay   PetscFunctionReturn(0);
13172d61bbb3SSatish Balay }
13182d61bbb3SSatish Balay 
131952768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
132052768537SHong Zhang {
132152768537SHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
132252768537SHong Zhang   PetscErrorCode ierr;
132352768537SHong Zhang 
132452768537SHong Zhang   PetscFunctionBegin;
132552768537SHong Zhang   ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr);
132652768537SHong Zhang   PetscFunctionReturn(0);
132752768537SHong Zhang }
132852768537SHong Zhang 
1329c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13302d61bbb3SSatish Balay {
1331dfbe8321SBarry Smith   PetscErrorCode ierr;
1332606d414cSSatish Balay 
13332d61bbb3SSatish Balay   PetscFunctionBegin;
133405b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
133505b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
13362d61bbb3SSatish Balay   PetscFunctionReturn(0);
13372d61bbb3SSatish Balay }
13382d61bbb3SSatish Balay 
1339fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
13402d61bbb3SSatish Balay {
134120e84f26SHong Zhang   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data,*at;
13422d61bbb3SSatish Balay   Mat            C;
13436849ba73SBarry Smith   PetscErrorCode ierr;
134420e84f26SHong Zhang   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,*atfill;
134520e84f26SHong Zhang   PetscInt       bs2=a->bs2,*ati,*atj,anzj,kr;
134620e84f26SHong Zhang   MatScalar      *ata,*aa=a->a;
13472d61bbb3SSatish Balay 
13482d61bbb3SSatish Balay   PetscFunctionBegin;
134920e84f26SHong Zhang   ierr = PetscCalloc1(1+nbs,&atfill);CHKERRQ(ierr);
1350cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
135120e84f26SHong Zhang     for (i=0; i<ai[mbs]; i++) atfill[aj[i]] += 1; /* count num of non-zeros in row aj[i] */
13522d61bbb3SSatish Balay 
1353ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr);
1354d0f46423SBarry Smith     ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr);
13557adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
135620e84f26SHong Zhang     ierr = MatSeqBAIJSetPreallocation(C,bs,0,atfill);CHKERRQ(ierr);
135720e84f26SHong Zhang 
135820e84f26SHong Zhang     at  = (Mat_SeqBAIJ*)C->data;
135920e84f26SHong Zhang     ati = at->i;
136020e84f26SHong Zhang     for (i=0; i<nbs; i++) at->ilen[i] = at->imax[i] = ati[i+1] - ati[i];
1361fc4dec0aSBarry Smith   } else {
1362fc4dec0aSBarry Smith     C = *B;
136320e84f26SHong Zhang     at = (Mat_SeqBAIJ*)C->data;
136420e84f26SHong Zhang     ati = at->i;
1365fc4dec0aSBarry Smith   }
1366fc4dec0aSBarry Smith 
136720e84f26SHong Zhang   atj = at->j;
136820e84f26SHong Zhang   ata = at->a;
136920e84f26SHong Zhang 
137020e84f26SHong Zhang   /* Copy ati into atfill so we have locations of the next free space in atj */
1371580bdb30SBarry Smith   ierr = PetscArraycpy(atfill,ati,nbs);CHKERRQ(ierr);
137220e84f26SHong Zhang 
137320e84f26SHong Zhang   /* Walk through A row-wise and mark nonzero entries of A^T. */
13742d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
137520e84f26SHong Zhang     anzj = ai[i+1] - ai[i];
137620e84f26SHong Zhang     for (j=0; j<anzj; j++) {
137720e84f26SHong Zhang       atj[atfill[*aj]] = i;
137820e84f26SHong Zhang       for (kr=0; kr<bs; kr++) {
137920e84f26SHong Zhang         for (k=0; k<bs; k++) {
138020e84f26SHong Zhang           ata[bs2*atfill[*aj]+k*bs+kr] = *aa++;
13812d61bbb3SSatish Balay         }
13822d61bbb3SSatish Balay       }
138320e84f26SHong Zhang       atfill[*aj++] += 1;
138420e84f26SHong Zhang     }
138520e84f26SHong Zhang   }
13862d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13872d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13882d61bbb3SSatish Balay 
138920e84f26SHong Zhang   /* Clean up temporary space and complete requests. */
139020e84f26SHong Zhang   ierr = PetscFree(atfill);CHKERRQ(ierr);
139120e84f26SHong Zhang 
1392cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
139320e84f26SHong Zhang     ierr = MatSetBlockSizes(C,PetscAbs(A->cmap->bs),PetscAbs(A->rmap->bs));CHKERRQ(ierr);
13942d61bbb3SSatish Balay     *B = C;
13952d61bbb3SSatish Balay   } else {
139628be2f97SBarry Smith     ierr = MatHeaderMerge(A,&C);CHKERRQ(ierr);
13972d61bbb3SSatish Balay   }
13982d61bbb3SSatish Balay   PetscFunctionReturn(0);
13992d61bbb3SSatish Balay }
14002d61bbb3SSatish Balay 
1401453d3561SHong Zhang PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A,Mat B,PetscReal tol,PetscBool  *f)
1402453d3561SHong Zhang {
1403453d3561SHong Zhang   PetscErrorCode ierr;
1404453d3561SHong Zhang   Mat            Btrans;
1405453d3561SHong Zhang 
1406453d3561SHong Zhang   PetscFunctionBegin;
1407453d3561SHong Zhang   *f   = PETSC_FALSE;
1408453d3561SHong Zhang   ierr = MatTranspose_SeqBAIJ(A,MAT_INITIAL_MATRIX,&Btrans);CHKERRQ(ierr);
1409453d3561SHong Zhang   ierr = MatEqual_SeqBAIJ(B,Btrans,f);CHKERRQ(ierr);
1410453d3561SHong Zhang   ierr = MatDestroy(&Btrans);CHKERRQ(ierr);
1411453d3561SHong Zhang   PetscFunctionReturn(0);
1412453d3561SHong Zhang }
1413453d3561SHong Zhang 
14146849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
14152593348eSBarry Smith {
1416b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14176849ba73SBarry Smith   PetscErrorCode ierr;
1418d0f46423SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2;
1419b24ad042SBarry Smith   int            fd;
142087828ca2SBarry Smith   PetscScalar    *aa;
1421ce6f0cecSBarry Smith   FILE           *file;
14222593348eSBarry Smith 
14233a40ed3dSBarry Smith   PetscFunctionBegin;
1424b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1425854ce69bSBarry Smith   ierr        = PetscMalloc1(4+A->rmap->N,&col_lens);CHKERRQ(ierr);
14260700a824SBarry Smith   col_lens[0] = MAT_FILE_CLASSID;
14273b2fbd54SBarry Smith 
1428d0f46423SBarry Smith   col_lens[1] = A->rmap->N;
1429d0f46423SBarry Smith   col_lens[2] = A->cmap->n;
14307e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
14312593348eSBarry Smith 
14322593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1433b6490206SBarry Smith   count = 0;
1434b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1435b6490206SBarry Smith     for (j=0; j<bs; j++) {
1436b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1437b6490206SBarry Smith     }
14382593348eSBarry Smith   }
1439d0f46423SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1440606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
14412593348eSBarry Smith 
14422593348eSBarry Smith   /* store column indices (zero start index) */
1443785e854fSJed Brown   ierr  = PetscMalloc1((a->nz+1)*bs2,&jj);CHKERRQ(ierr);
1444b6490206SBarry Smith   count = 0;
1445b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1446b6490206SBarry Smith     for (j=0; j<bs; j++) {
1447b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1448b6490206SBarry Smith         for (l=0; l<bs; l++) {
1449b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
14502593348eSBarry Smith         }
14512593348eSBarry Smith       }
1452b6490206SBarry Smith     }
1453b6490206SBarry Smith   }
14546f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1455606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
14562593348eSBarry Smith 
14572593348eSBarry Smith   /* store nonzero values */
1458785e854fSJed Brown   ierr  = PetscMalloc1((a->nz+1)*bs2,&aa);CHKERRQ(ierr);
1459b6490206SBarry Smith   count = 0;
1460b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1461b6490206SBarry Smith     for (j=0; j<bs; j++) {
1462b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1463b6490206SBarry Smith         for (l=0; l<bs; l++) {
14647e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1465b6490206SBarry Smith         }
1466b6490206SBarry Smith       }
1467b6490206SBarry Smith     }
1468b6490206SBarry Smith   }
14696f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1470606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1471ce6f0cecSBarry Smith 
1472b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1473ce6f0cecSBarry Smith   if (file) {
1474d0f46423SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs);
1475ce6f0cecSBarry Smith   }
14763a40ed3dSBarry Smith   PetscFunctionReturn(0);
14772593348eSBarry Smith }
14782593348eSBarry Smith 
14797dc0baabSHong Zhang static PetscErrorCode MatView_SeqBAIJ_ASCII_structonly(Mat A,PetscViewer viewer)
14807dc0baabSHong Zhang {
14817dc0baabSHong Zhang   PetscErrorCode ierr;
14827dc0baabSHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14837dc0baabSHong Zhang   PetscInt       i,bs = A->rmap->bs,k;
14847dc0baabSHong Zhang 
14857dc0baabSHong Zhang   PetscFunctionBegin;
14867dc0baabSHong Zhang   ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
14877dc0baabSHong Zhang   for (i=0; i<a->mbs; i++) {
14887dc0baabSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"row %D-%D:",i*bs,i*bs+bs-1);CHKERRQ(ierr);
14897dc0baabSHong Zhang     for (k=a->i[i]; k<a->i[i+1]; k++) {
14907dc0baabSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer," (%D-%D) ",bs*a->j[k],bs*a->j[k]+bs-1);CHKERRQ(ierr);
14917dc0baabSHong Zhang     }
14927dc0baabSHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
14937dc0baabSHong Zhang   }
14947dc0baabSHong Zhang   ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
14957dc0baabSHong Zhang   PetscFunctionReturn(0);
14967dc0baabSHong Zhang }
14977dc0baabSHong Zhang 
14986849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
14992593348eSBarry Smith {
1500b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1501dfbe8321SBarry Smith   PetscErrorCode    ierr;
1502d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
1503f3ef73ceSBarry Smith   PetscViewerFormat format;
15042593348eSBarry Smith 
15053a40ed3dSBarry Smith   PetscFunctionBegin;
15067dc0baabSHong Zhang   if (A->structure_only) {
15077dc0baabSHong Zhang     ierr = MatView_SeqBAIJ_ASCII_structonly(A,viewer);CHKERRQ(ierr);
15087dc0baabSHong Zhang     PetscFunctionReturn(0);
15097dc0baabSHong Zhang   }
15107dc0baabSHong Zhang 
1511b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1512456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
151377431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1514fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1515ade3a672SBarry Smith     const char *matname;
1516bcd9e38bSBarry Smith     Mat        aij;
1517ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1518ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr);
1519ade3a672SBarry Smith     ierr = PetscObjectSetName((PetscObject)aij,matname);CHKERRQ(ierr);
1520bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
15216bf464f9SBarry Smith     ierr = MatDestroy(&aij);CHKERRQ(ierr);
152204929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
152304929863SHong Zhang       PetscFunctionReturn(0);
1524fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1525d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
152644cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
152744cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
152877431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
152944cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
153044cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1531aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15320e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
153357622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %gi) ",bs*a->j[k]+l,
153457622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15350e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
153657622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %gi) ",bs*a->j[k]+l,
153757622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15380e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
153957622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15400ef38995SBarry Smith             }
154144cd7ae7SLois Curfman McInnes #else
15420ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
154357622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
15440ef38995SBarry Smith             }
154544cd7ae7SLois Curfman McInnes #endif
154644cd7ae7SLois Curfman McInnes           }
154744cd7ae7SLois Curfman McInnes         }
1548b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
154944cd7ae7SLois Curfman McInnes       }
155044cd7ae7SLois Curfman McInnes     }
1551d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
15520ef38995SBarry Smith   } else {
1553d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1554b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1555b6490206SBarry Smith       for (j=0; j<bs; j++) {
155677431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1557b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1558b6490206SBarry Smith           for (l=0; l<bs; l++) {
1559aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15600e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
156157622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
156257622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15630e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
156457622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
156557622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15660ef38995SBarry Smith             } else {
156757622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
156888685aaeSLois Curfman McInnes             }
156988685aaeSLois Curfman McInnes #else
157057622a8eSBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
157188685aaeSLois Curfman McInnes #endif
15722593348eSBarry Smith           }
15732593348eSBarry Smith         }
1574b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
15752593348eSBarry Smith       }
15762593348eSBarry Smith     }
1577d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1578b6490206SBarry Smith   }
1579b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15803a40ed3dSBarry Smith   PetscFunctionReturn(0);
15812593348eSBarry Smith }
15822593348eSBarry Smith 
15839804daf3SBarry Smith #include <petscdraw.h>
15846849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
15853270192aSSatish Balay {
158677ed5343SBarry Smith   Mat               A = (Mat) Aa;
15873270192aSSatish Balay   Mat_SeqBAIJ       *a=(Mat_SeqBAIJ*)A->data;
15886849ba73SBarry Smith   PetscErrorCode    ierr;
1589d0f46423SBarry Smith   PetscInt          row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
15900e6d2581SBarry Smith   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
15913f1db9ecSBarry Smith   MatScalar         *aa;
1592b0a32e0cSBarry Smith   PetscViewer       viewer;
1593b3e7f47fSJed Brown   PetscViewerFormat format;
15943270192aSSatish Balay 
15953a40ed3dSBarry Smith   PetscFunctionBegin;
159677ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1597b3e7f47fSJed Brown   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1598b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
159977ed5343SBarry Smith 
16003270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1601b3e7f47fSJed Brown 
1602b3e7f47fSJed Brown   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1603383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1604383922c3SLisandro Dalcin     /* Blue for negative, Cyan for zero and  Red for positive */
1605b0a32e0cSBarry Smith     color = PETSC_DRAW_BLUE;
16063270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16073270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1608d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16093270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16103270192aSSatish Balay         aa  = a->a + j*bs2;
16113270192aSSatish Balay         for (k=0; k<bs; k++) {
16123270192aSSatish Balay           for (l=0; l<bs; l++) {
16130e6d2581SBarry Smith             if (PetscRealPart(*aa++) >=  0.) continue;
1614b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16153270192aSSatish Balay           }
16163270192aSSatish Balay         }
16173270192aSSatish Balay       }
16183270192aSSatish Balay     }
1619b0a32e0cSBarry Smith     color = PETSC_DRAW_CYAN;
16203270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16213270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1622d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16233270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16243270192aSSatish Balay         aa  = a->a + j*bs2;
16253270192aSSatish Balay         for (k=0; k<bs; k++) {
16263270192aSSatish Balay           for (l=0; l<bs; l++) {
16270e6d2581SBarry Smith             if (PetscRealPart(*aa++) != 0.) continue;
1628b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16293270192aSSatish Balay           }
16303270192aSSatish Balay         }
16313270192aSSatish Balay       }
16323270192aSSatish Balay     }
1633b0a32e0cSBarry Smith     color = PETSC_DRAW_RED;
16343270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16353270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1636d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16373270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16383270192aSSatish Balay         aa  = a->a + j*bs2;
16393270192aSSatish Balay         for (k=0; k<bs; k++) {
16403270192aSSatish Balay           for (l=0; l<bs; l++) {
16410e6d2581SBarry Smith             if (PetscRealPart(*aa++) <= 0.) continue;
1642b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16433270192aSSatish Balay           }
16443270192aSSatish Balay         }
16453270192aSSatish Balay       }
16463270192aSSatish Balay     }
1647383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1648b3e7f47fSJed Brown   } else {
1649b3e7f47fSJed Brown     /* use contour shading to indicate magnitude of values */
1650b3e7f47fSJed Brown     /* first determine max of all nonzero values */
1651b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1652b3e7f47fSJed Brown     PetscDraw popup;
1653b3e7f47fSJed Brown 
1654b3e7f47fSJed Brown     for (i=0; i<a->nz*a->bs2; i++) {
1655b3e7f47fSJed Brown       if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]);
1656b3e7f47fSJed Brown     }
1657383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1658b3e7f47fSJed Brown     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
165945f3bb6eSLisandro Dalcin     ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);
1660383922c3SLisandro Dalcin 
1661383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1662b3e7f47fSJed Brown     for (i=0,row=0; i<mbs; i++,row+=bs) {
1663b3e7f47fSJed Brown       for (j=a->i[i]; j<a->i[i+1]; j++) {
1664b3e7f47fSJed Brown         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
1665b3e7f47fSJed Brown         x_l = a->j[j]*bs; x_r = x_l + 1.0;
1666b3e7f47fSJed Brown         aa  = a->a + j*bs2;
1667b3e7f47fSJed Brown         for (k=0; k<bs; k++) {
1668b3e7f47fSJed Brown           for (l=0; l<bs; l++) {
1669383922c3SLisandro Dalcin             MatScalar v = *aa++;
1670383922c3SLisandro Dalcin             color = PetscDrawRealToColor(PetscAbsScalar(v),minv,maxv);
1671b3e7f47fSJed Brown             ierr  = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
1672b3e7f47fSJed Brown           }
1673b3e7f47fSJed Brown         }
1674b3e7f47fSJed Brown       }
1675b3e7f47fSJed Brown     }
1676383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1677b3e7f47fSJed Brown   }
167877ed5343SBarry Smith   PetscFunctionReturn(0);
167977ed5343SBarry Smith }
16803270192aSSatish Balay 
16816849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
168277ed5343SBarry Smith {
1683dfbe8321SBarry Smith   PetscErrorCode ierr;
16840e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1685b0a32e0cSBarry Smith   PetscDraw      draw;
1686ace3abfcSBarry Smith   PetscBool      isnull;
16873270192aSSatish Balay 
168877ed5343SBarry Smith   PetscFunctionBegin;
1689b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
169045f3bb6eSLisandro Dalcin   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
169145f3bb6eSLisandro Dalcin   if (isnull) PetscFunctionReturn(0);
169277ed5343SBarry Smith 
1693d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
169477ed5343SBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
1695b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1696832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1697b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
16980298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1699832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
17003a40ed3dSBarry Smith   PetscFunctionReturn(0);
17013270192aSSatish Balay }
17023270192aSSatish Balay 
1703dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
17042593348eSBarry Smith {
1705dfbe8321SBarry Smith   PetscErrorCode ierr;
1706ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
17072593348eSBarry Smith 
17083a40ed3dSBarry Smith   PetscFunctionBegin;
1709251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1710251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1711251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
171232077d6dSBarry Smith   if (iascii) {
17133a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
17140f5bd95cSBarry Smith   } else if (isbinary) {
17153a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
17160f5bd95cSBarry Smith   } else if (isdraw) {
17173a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
17185cd90555SBarry Smith   } else {
1719a5e6ed63SBarry Smith     Mat B;
1720ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1721a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
17226bf464f9SBarry Smith     ierr = MatDestroy(&B);CHKERRQ(ierr);
17232593348eSBarry Smith   }
17243a40ed3dSBarry Smith   PetscFunctionReturn(0);
17252593348eSBarry Smith }
1726b6490206SBarry Smith 
1727cd0e1443SSatish Balay 
1728c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1729cd0e1443SSatish Balay {
1730cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1731c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1732c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1733d0f46423SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
173497e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1735cd0e1443SSatish Balay 
17363a40ed3dSBarry Smith   PetscFunctionBegin;
17372d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1738cd0e1443SSatish Balay     row = im[k]; brow = row/bs;
1739e32f2f54SBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1740e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
17412d61bbb3SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
17422c3acbe9SBarry Smith     nrow = ailen[brow];
17432d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
1744e32f2f54SBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1745e32f2f54SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
17462d61bbb3SSatish Balay       col  = in[l];
17472d61bbb3SSatish Balay       bcol = col/bs;
17482d61bbb3SSatish Balay       cidx = col%bs;
17492d61bbb3SSatish Balay       ridx = row%bs;
17502d61bbb3SSatish Balay       high = nrow;
17512d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17522d61bbb3SSatish Balay       while (high-low > 5) {
1753cd0e1443SSatish Balay         t = (low+high)/2;
1754cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1755cd0e1443SSatish Balay         else             low  = t;
1756cd0e1443SSatish Balay       }
1757cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1758cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1759cd0e1443SSatish Balay         if (rp[i] == bcol) {
17602d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17612d61bbb3SSatish Balay           goto finished;
1762cd0e1443SSatish Balay         }
1763cd0e1443SSatish Balay       }
176497e567efSBarry Smith       *v++ = 0.0;
17652d61bbb3SSatish Balay finished:;
1766cd0e1443SSatish Balay     }
1767cd0e1443SSatish Balay   }
17683a40ed3dSBarry Smith   PetscFunctionReturn(0);
1769cd0e1443SSatish Balay }
1770cd0e1443SSatish Balay 
1771dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
177292c4ed94SBarry Smith {
177392c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1774e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1775c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
17766849ba73SBarry Smith   PetscErrorCode    ierr;
1777d0f46423SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
1778ace3abfcSBarry Smith   PetscBool         roworiented=a->roworiented;
1779dd6ea824SBarry Smith   const PetscScalar *value     = v;
17809d243f67SHong Zhang   MatScalar         *ap=NULL,*aa = a->a,*bap;
178192c4ed94SBarry Smith 
17823a40ed3dSBarry Smith   PetscFunctionBegin;
17830e324ae4SSatish Balay   if (roworiented) {
17840e324ae4SSatish Balay     stepval = (n-1)*bs;
17850e324ae4SSatish Balay   } else {
17860e324ae4SSatish Balay     stepval = (m-1)*bs;
17870e324ae4SSatish Balay   }
178892c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
178992c4ed94SBarry Smith     row = im[k];
17905ef9f2a5SBarry Smith     if (row < 0) continue;
17912515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
17922f7d4af7SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block row index too large %D max %D",row,a->mbs-1);
179392c4ed94SBarry Smith #endif
179492c4ed94SBarry Smith     rp   = aj + ai[row];
17957dc0baabSHong Zhang     if (!A->structure_only) ap = aa + bs2*ai[row];
179692c4ed94SBarry Smith     rmax = imax[row];
179792c4ed94SBarry Smith     nrow = ailen[row];
179892c4ed94SBarry Smith     low  = 0;
1799c71e6ed7SBarry Smith     high = nrow;
180092c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
18015ef9f2a5SBarry Smith       if (in[l] < 0) continue;
18022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
18032f7d4af7SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block column index too large %D max %D",in[l],a->nbs-1);
180492c4ed94SBarry Smith #endif
180592c4ed94SBarry Smith       col = in[l];
18067dc0baabSHong Zhang       if (!A->structure_only) {
180792c4ed94SBarry Smith         if (roworiented) {
180853ef36baSBarry Smith           value = v + (k*(stepval+bs) + l)*bs;
18090e324ae4SSatish Balay         } else {
181053ef36baSBarry Smith           value = v + (l*(stepval+bs) + k)*bs;
181192c4ed94SBarry Smith         }
18127dc0baabSHong Zhang       }
181326fbe8dcSKarl Rupp       if (col <= lastcol) low = 0;
181426fbe8dcSKarl Rupp       else high = nrow;
1815e2ee6c50SBarry Smith       lastcol = col;
181692c4ed94SBarry Smith       while (high-low > 7) {
181792c4ed94SBarry Smith         t = (low+high)/2;
181892c4ed94SBarry Smith         if (rp[t] > col) high = t;
181992c4ed94SBarry Smith         else             low  = t;
182092c4ed94SBarry Smith       }
182192c4ed94SBarry Smith       for (i=low; i<high; i++) {
182292c4ed94SBarry Smith         if (rp[i] > col) break;
182392c4ed94SBarry Smith         if (rp[i] == col) {
18247dc0baabSHong Zhang           if (A->structure_only) goto noinsert2;
18258a84c255SSatish Balay           bap = ap +  bs2*i;
18260e324ae4SSatish Balay           if (roworiented) {
18278a84c255SSatish Balay             if (is == ADD_VALUES) {
1828dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1829dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18308a84c255SSatish Balay                   bap[jj] += *value++;
1831dd9472c6SBarry Smith                 }
1832dd9472c6SBarry Smith               }
18330e324ae4SSatish Balay             } else {
1834dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1835dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18360e324ae4SSatish Balay                   bap[jj] = *value++;
18378a84c255SSatish Balay                 }
1838dd9472c6SBarry Smith               }
1839dd9472c6SBarry Smith             }
18400e324ae4SSatish Balay           } else {
18410e324ae4SSatish Balay             if (is == ADD_VALUES) {
184253ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
1843dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
184453ef36baSBarry Smith                   bap[jj] += value[jj];
1845dd9472c6SBarry Smith                 }
184653ef36baSBarry Smith                 bap += bs;
1847dd9472c6SBarry Smith               }
18480e324ae4SSatish Balay             } else {
184953ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
1850dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
185153ef36baSBarry Smith                   bap[jj]  = value[jj];
18520e324ae4SSatish Balay                 }
185353ef36baSBarry Smith                 bap += bs;
18548a84c255SSatish Balay               }
1855dd9472c6SBarry Smith             }
1856dd9472c6SBarry Smith           }
1857f1241b54SBarry Smith           goto noinsert2;
185892c4ed94SBarry Smith         }
185992c4ed94SBarry Smith       }
186089280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
18612f7d4af7SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked index new nonzero block (%D, %D) in the matrix", row, col);
18627dc0baabSHong Zhang       if (A->structure_only) {
18637dc0baabSHong Zhang         MatSeqXAIJReallocateAIJ_structure_only(A,a->mbs,bs2,nrow,row,col,rmax,ai,aj,rp,imax,nonew,MatScalar);
18647dc0baabSHong Zhang       } else {
1865fef13f97SBarry Smith         MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
18667dc0baabSHong Zhang       }
1867c03d1d03SSatish Balay       N = nrow++ - 1; high++;
186892c4ed94SBarry Smith       /* shift up all the later entries in this row */
1869580bdb30SBarry Smith       ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
187092c4ed94SBarry Smith       rp[i] = col;
18717dc0baabSHong Zhang       if (!A->structure_only) {
1872580bdb30SBarry Smith         ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
18738a84c255SSatish Balay         bap   = ap +  bs2*i;
18740e324ae4SSatish Balay         if (roworiented) {
1875dd9472c6SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
1876dd9472c6SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
18770e324ae4SSatish Balay               bap[jj] = *value++;
1878dd9472c6SBarry Smith             }
1879dd9472c6SBarry Smith           }
18800e324ae4SSatish Balay         } else {
1881dd9472c6SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
1882dd9472c6SBarry Smith             for (jj=0; jj<bs; jj++) {
18830e324ae4SSatish Balay               *bap++ = *value++;
18840e324ae4SSatish Balay             }
1885dd9472c6SBarry Smith           }
1886dd9472c6SBarry Smith         }
18877dc0baabSHong Zhang       }
1888f1241b54SBarry Smith noinsert2:;
188992c4ed94SBarry Smith       low = i;
189092c4ed94SBarry Smith     }
189192c4ed94SBarry Smith     ailen[row] = nrow;
189292c4ed94SBarry Smith   }
18933a40ed3dSBarry Smith   PetscFunctionReturn(0);
189492c4ed94SBarry Smith }
189526e093fcSHong Zhang 
1896dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1897584200bdSSatish Balay {
1898584200bdSSatish Balay   Mat_SeqBAIJ    *a     = (Mat_SeqBAIJ*)A->data;
1899580bdb30SBarry Smith   PetscInt       fshift = 0,i,*ai = a->i,*aj = a->j,*imax = a->imax;
1900d0f46423SBarry Smith   PetscInt       m      = A->rmap->N,*ip,N,*ailen = a->ilen;
19016849ba73SBarry Smith   PetscErrorCode ierr;
1902c1ac3661SBarry Smith   PetscInt       mbs  = a->mbs,bs2 = a->bs2,rmax = 0;
19033f1db9ecSBarry Smith   MatScalar      *aa  = a->a,*ap;
19043447b6efSHong Zhang   PetscReal      ratio=0.6;
1905584200bdSSatish Balay 
19063a40ed3dSBarry Smith   PetscFunctionBegin;
19073a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1908584200bdSSatish Balay 
190943ee02c3SBarry Smith   if (m) rmax = ailen[0];
1910584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1911584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1912584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1913d402145bSBarry Smith     rmax    = PetscMax(rmax,ailen[i]);
1914584200bdSSatish Balay     if (fshift) {
1915580bdb30SBarry Smith       ip = aj + ai[i];
1916580bdb30SBarry Smith       ap = aa + bs2*ai[i];
1917584200bdSSatish Balay       N  = ailen[i];
1918580bdb30SBarry Smith       ierr = PetscArraymove(ip-fshift,ip,N);CHKERRQ(ierr);
1919672ba085SHong Zhang       if (!A->structure_only) {
1920580bdb30SBarry Smith         ierr = PetscArraymove(ap-bs2*fshift,ap,bs2*N);CHKERRQ(ierr);
1921584200bdSSatish Balay       }
1922672ba085SHong Zhang     }
1923584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1924584200bdSSatish Balay   }
1925584200bdSSatish Balay   if (mbs) {
1926584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1927584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1928584200bdSSatish Balay   }
19297c565772SBarry Smith 
1930584200bdSSatish Balay   /* reset ilen and imax for each row */
19317c565772SBarry Smith   a->nonzerorowcnt = 0;
1932672ba085SHong Zhang   if (A->structure_only) {
1933672ba085SHong Zhang     ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);
1934672ba085SHong Zhang   } else { /* !A->structure_only */
1935584200bdSSatish Balay     for (i=0; i<mbs; i++) {
1936584200bdSSatish Balay       ailen[i] = imax[i] = ai[i+1] - ai[i];
19377c565772SBarry Smith       a->nonzerorowcnt += ((ai[i+1] - ai[i]) > 0);
1938584200bdSSatish Balay     }
1939672ba085SHong Zhang   }
1940a7c10996SSatish Balay   a->nz = ai[mbs];
1941584200bdSSatish Balay 
1942584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1943b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1944584200bdSSatish Balay   if (fshift && a->diag) {
1945606d414cSSatish Balay     ierr    = PetscFree(a->diag);CHKERRQ(ierr);
19463bb1ff40SBarry Smith     ierr    = PetscLogObjectMemory((PetscObject)A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1947584200bdSSatish Balay     a->diag = 0;
1948584200bdSSatish Balay   }
194965e19b50SBarry Smith   if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);
1950d0f46423SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
1951ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
1952ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
195326fbe8dcSKarl Rupp 
19548e58a170SBarry Smith   A->info.mallocs    += a->reallocs;
1955e2f3b5e9SSatish Balay   a->reallocs         = 0;
19560e6d2581SBarry Smith   A->info.nz_unneeded = (PetscReal)fshift*bs2;
1957647a6520SHong Zhang   a->rmax             = rmax;
1958cf4441caSHong Zhang 
1959672ba085SHong Zhang   if (!A->structure_only) {
196011e456e1SBarry Smith     ierr = MatCheckCompressedRow(A,a->nonzerorowcnt,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
1961672ba085SHong Zhang   }
19623a40ed3dSBarry Smith   PetscFunctionReturn(0);
1963584200bdSSatish Balay }
1964584200bdSSatish Balay 
1965bea157c4SSatish Balay /*
1966bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1967bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1968bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
1969bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
1970bea157c4SSatish Balay */
1971c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
1972d9b7c43dSSatish Balay {
1973c1ac3661SBarry Smith   PetscInt  i,j,k,row;
1974ace3abfcSBarry Smith   PetscBool flg;
19753a40ed3dSBarry Smith 
1976433994e6SBarry Smith   PetscFunctionBegin;
1977bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
1978bea157c4SSatish Balay     row = idx[i];
1979bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
1980bea157c4SSatish Balay       sizes[j] = 1;
1981bea157c4SSatish Balay       i++;
1982e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
1983bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
1984bea157c4SSatish Balay       i++;
1985bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
1986bea157c4SSatish Balay       flg = PETSC_TRUE;
1987bea157c4SSatish Balay       for (k=1; k<bs; k++) {
1988bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
1989bea157c4SSatish Balay           flg = PETSC_FALSE;
1990bea157c4SSatish Balay           break;
1991d9b7c43dSSatish Balay         }
1992bea157c4SSatish Balay       }
1993abc0a331SBarry Smith       if (flg) { /* No break in the bs */
1994bea157c4SSatish Balay         sizes[j] = bs;
1995bea157c4SSatish Balay         i       += bs;
1996bea157c4SSatish Balay       } else {
1997bea157c4SSatish Balay         sizes[j] = 1;
1998bea157c4SSatish Balay         i++;
1999bea157c4SSatish Balay       }
2000bea157c4SSatish Balay     }
2001bea157c4SSatish Balay   }
2002bea157c4SSatish Balay   *bs_max = j;
20033a40ed3dSBarry Smith   PetscFunctionReturn(0);
2004d9b7c43dSSatish Balay }
2005d9b7c43dSSatish Balay 
20062b40b63fSBarry Smith PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
2007d9b7c43dSSatish Balay {
2008d9b7c43dSSatish Balay   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
2009dfbe8321SBarry Smith   PetscErrorCode    ierr;
2010f4df32b1SMatthew Knepley   PetscInt          i,j,k,count,*rows;
2011d0f46423SBarry Smith   PetscInt          bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max;
201287828ca2SBarry Smith   PetscScalar       zero = 0.0;
20133f1db9ecSBarry Smith   MatScalar         *aa;
201497b48c8fSBarry Smith   const PetscScalar *xx;
201597b48c8fSBarry Smith   PetscScalar       *bb;
2016d9b7c43dSSatish Balay 
20173a40ed3dSBarry Smith   PetscFunctionBegin;
201897b48c8fSBarry Smith   /* fix right hand side if needed */
201997b48c8fSBarry Smith   if (x && b) {
202097b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
202197b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
202297b48c8fSBarry Smith     for (i=0; i<is_n; i++) {
202397b48c8fSBarry Smith       bb[is_idx[i]] = diag*xx[is_idx[i]];
202497b48c8fSBarry Smith     }
202597b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
202697b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
202797b48c8fSBarry Smith   }
202897b48c8fSBarry Smith 
2029d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2030bea157c4SSatish Balay   /* allocate memory for rows,sizes */
2031dcca6d9dSJed Brown   ierr = PetscMalloc2(is_n,&rows,2*is_n,&sizes);CHKERRQ(ierr);
2032bea157c4SSatish Balay 
2033563b5814SBarry Smith   /* copy IS values to rows, and sort them */
203426fbe8dcSKarl Rupp   for (i=0; i<is_n; i++) rows[i] = is_idx[i];
2035bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
203697b48c8fSBarry Smith 
2037a9817697SBarry Smith   if (baij->keepnonzeropattern) {
203826fbe8dcSKarl Rupp     for (i=0; i<is_n; i++) sizes[i] = 1;
2039dffd3267SBarry Smith     bs_max          = is_n;
2040dffd3267SBarry Smith   } else {
2041bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
2042e56f5c9eSBarry Smith     A->nonzerostate++;
2043dffd3267SBarry Smith   }
2044bea157c4SSatish Balay 
2045bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
2046bea157c4SSatish Balay     row = rows[j];
2047e32f2f54SBarry Smith     if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
2048bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2049b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2050a9817697SBarry Smith     if (sizes[i] == bs && !baij->keepnonzeropattern) {
2051d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2052bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2053bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2054bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
205526fbe8dcSKarl Rupp 
2056580bdb30SBarry Smith           ierr = PetscArrayzero(aa,count*bs);CHKERRQ(ierr);
2057a07cd24cSSatish Balay         }
2058563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2059bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2060f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2061bea157c4SSatish Balay         }
2062f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2063bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2064f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2065bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2066aa482453SBarry Smith #if defined(PETSC_USE_DEBUG)
2067e32f2f54SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2068bea157c4SSatish Balay #endif
2069bea157c4SSatish Balay       for (k=0; k<count; k++) {
2070d9b7c43dSSatish Balay         aa[0] =  zero;
2071d9b7c43dSSatish Balay         aa   += bs;
2072d9b7c43dSSatish Balay       }
2073d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2074f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2075d9b7c43dSSatish Balay       }
2076d9b7c43dSSatish Balay     }
2077bea157c4SSatish Balay   }
2078bea157c4SSatish Balay 
2079fca92195SBarry Smith   ierr = PetscFree2(rows,sizes);CHKERRQ(ierr);
20809a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20813a40ed3dSBarry Smith   PetscFunctionReturn(0);
2082d9b7c43dSSatish Balay }
20831c351548SSatish Balay 
208497b48c8fSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
208597b48c8fSBarry Smith {
208697b48c8fSBarry Smith   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
208797b48c8fSBarry Smith   PetscErrorCode    ierr;
208897b48c8fSBarry Smith   PetscInt          i,j,k,count;
208997b48c8fSBarry Smith   PetscInt          bs   =A->rmap->bs,bs2=baij->bs2,row,col;
209097b48c8fSBarry Smith   PetscScalar       zero = 0.0;
209197b48c8fSBarry Smith   MatScalar         *aa;
209297b48c8fSBarry Smith   const PetscScalar *xx;
209397b48c8fSBarry Smith   PetscScalar       *bb;
209456777dd2SBarry Smith   PetscBool         *zeroed,vecs = PETSC_FALSE;
209597b48c8fSBarry Smith 
209697b48c8fSBarry Smith   PetscFunctionBegin;
209797b48c8fSBarry Smith   /* fix right hand side if needed */
209897b48c8fSBarry Smith   if (x && b) {
209997b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
210097b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
210156777dd2SBarry Smith     vecs = PETSC_TRUE;
210297b48c8fSBarry Smith   }
210397b48c8fSBarry Smith 
210497b48c8fSBarry Smith   /* zero the columns */
21051795a4d1SJed Brown   ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr);
210697b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
210797b48c8fSBarry Smith     if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]);
210897b48c8fSBarry Smith     zeroed[is_idx[i]] = PETSC_TRUE;
210997b48c8fSBarry Smith   }
211097b48c8fSBarry Smith   for (i=0; i<A->rmap->N; i++) {
211197b48c8fSBarry Smith     if (!zeroed[i]) {
211297b48c8fSBarry Smith       row = i/bs;
211397b48c8fSBarry Smith       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
211497b48c8fSBarry Smith         for (k=0; k<bs; k++) {
211597b48c8fSBarry Smith           col = bs*baij->j[j] + k;
211697b48c8fSBarry Smith           if (zeroed[col]) {
211797b48c8fSBarry Smith             aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
211856777dd2SBarry Smith             if (vecs) bb[i] -= aa[0]*xx[col];
211997b48c8fSBarry Smith             aa[0] = 0.0;
212097b48c8fSBarry Smith           }
212197b48c8fSBarry Smith         }
212297b48c8fSBarry Smith       }
212356777dd2SBarry Smith     } else if (vecs) bb[i] = diag*xx[i];
212497b48c8fSBarry Smith   }
212597b48c8fSBarry Smith   ierr = PetscFree(zeroed);CHKERRQ(ierr);
212656777dd2SBarry Smith   if (vecs) {
212756777dd2SBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
212856777dd2SBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
212956777dd2SBarry Smith   }
213097b48c8fSBarry Smith 
213197b48c8fSBarry Smith   /* zero the rows */
213297b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
213397b48c8fSBarry Smith     row   = is_idx[i];
213497b48c8fSBarry Smith     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
213597b48c8fSBarry Smith     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
213697b48c8fSBarry Smith     for (k=0; k<count; k++) {
213797b48c8fSBarry Smith       aa[0] =  zero;
213897b48c8fSBarry Smith       aa   += bs;
213997b48c8fSBarry Smith     }
2140d4a378daSJed Brown     if (diag != (PetscScalar)0.0) {
214197b48c8fSBarry Smith       ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
214297b48c8fSBarry Smith     }
214397b48c8fSBarry Smith   }
214497b48c8fSBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
214597b48c8fSBarry Smith   PetscFunctionReturn(0);
214697b48c8fSBarry Smith }
214797b48c8fSBarry Smith 
2148c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
21492d61bbb3SSatish Balay {
21502d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2151e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2152c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2153d0f46423SBarry Smith   PetscInt       *aj  =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
21546849ba73SBarry Smith   PetscErrorCode ierr;
2155c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2156ace3abfcSBarry Smith   PetscBool      roworiented=a->roworiented;
2157d8cdefa3SHong Zhang   MatScalar      *ap=NULL,value=0.0,*aa=a->a,*bap;
21582d61bbb3SSatish Balay 
21592d61bbb3SSatish Balay   PetscFunctionBegin;
21602d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2161085a36d4SBarry Smith     row  = im[k];
2162085a36d4SBarry Smith     brow = row/bs;
21635ef9f2a5SBarry Smith     if (row < 0) continue;
21642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2165e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
21662d61bbb3SSatish Balay #endif
21672d61bbb3SSatish Balay     rp   = aj + ai[brow];
2168672ba085SHong Zhang     if (!A->structure_only) ap = aa + bs2*ai[brow];
21692d61bbb3SSatish Balay     rmax = imax[brow];
21702d61bbb3SSatish Balay     nrow = ailen[brow];
21712d61bbb3SSatish Balay     low  = 0;
2172c71e6ed7SBarry Smith     high = nrow;
21732d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
21745ef9f2a5SBarry Smith       if (in[l] < 0) continue;
21752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2176e32f2f54SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
21772d61bbb3SSatish Balay #endif
21782d61bbb3SSatish Balay       col  = in[l]; bcol = col/bs;
21792d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
2180672ba085SHong Zhang       if (!A->structure_only) {
21812d61bbb3SSatish Balay         if (roworiented) {
21825ef9f2a5SBarry Smith           value = v[l + k*n];
21832d61bbb3SSatish Balay         } else {
21842d61bbb3SSatish Balay           value = v[k + l*m];
21852d61bbb3SSatish Balay         }
2186672ba085SHong Zhang       }
21877cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2188e2ee6c50SBarry Smith       lastcol = col;
21892d61bbb3SSatish Balay       while (high-low > 7) {
21902d61bbb3SSatish Balay         t = (low+high)/2;
21912d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
21922d61bbb3SSatish Balay         else              low  = t;
21932d61bbb3SSatish Balay       }
21942d61bbb3SSatish Balay       for (i=low; i<high; i++) {
21952d61bbb3SSatish Balay         if (rp[i] > bcol) break;
21962d61bbb3SSatish Balay         if (rp[i] == bcol) {
21972d61bbb3SSatish Balay           bap = ap +  bs2*i + bs*cidx + ridx;
2198672ba085SHong Zhang           if (!A->structure_only) {
21992d61bbb3SSatish Balay             if (is == ADD_VALUES) *bap += value;
22002d61bbb3SSatish Balay             else                  *bap  = value;
2201672ba085SHong Zhang           }
22022d61bbb3SSatish Balay           goto noinsert1;
22032d61bbb3SSatish Balay         }
22042d61bbb3SSatish Balay       }
22052d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2206e32f2f54SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2207672ba085SHong Zhang       if (A->structure_only) {
2208672ba085SHong Zhang         MatSeqXAIJReallocateAIJ_structure_only(A,a->mbs,bs2,nrow,brow,bcol,rmax,ai,aj,rp,imax,nonew,MatScalar);
2209672ba085SHong Zhang       } else {
2210fef13f97SBarry Smith         MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2211672ba085SHong Zhang       }
2212c03d1d03SSatish Balay       N = nrow++ - 1; high++;
22132d61bbb3SSatish Balay       /* shift up all the later entries in this row */
2214580bdb30SBarry Smith       ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
22152d61bbb3SSatish Balay       rp[i] = bcol;
2216580bdb30SBarry Smith       if (!A->structure_only) {
2217580bdb30SBarry Smith         ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
2218580bdb30SBarry Smith         ierr = PetscArrayzero(ap+bs2*i,bs2);CHKERRQ(ierr);
2219580bdb30SBarry Smith         ap[bs2*i + bs*cidx + ridx] = value;
2220580bdb30SBarry Smith       }
2221085a36d4SBarry Smith       a->nz++;
2222e56f5c9eSBarry Smith       A->nonzerostate++;
22232d61bbb3SSatish Balay noinsert1:;
22242d61bbb3SSatish Balay       low = i;
22252d61bbb3SSatish Balay     }
22262d61bbb3SSatish Balay     ailen[brow] = nrow;
22272d61bbb3SSatish Balay   }
22282d61bbb3SSatish Balay   PetscFunctionReturn(0);
22292d61bbb3SSatish Balay }
22302d61bbb3SSatish Balay 
22310481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info)
22322d61bbb3SSatish Balay {
22332d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
22342d61bbb3SSatish Balay   Mat            outA;
2235dfbe8321SBarry Smith   PetscErrorCode ierr;
2236ace3abfcSBarry Smith   PetscBool      row_identity,col_identity;
22372d61bbb3SSatish Balay 
22382d61bbb3SSatish Balay   PetscFunctionBegin;
2239e32f2f54SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2240667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2241667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2242f23aa3ddSBarry Smith   if (!row_identity || !col_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
22432d61bbb3SSatish Balay 
22442d61bbb3SSatish Balay   outA            = inA;
2245d5f3da31SBarry Smith   inA->factortype = MAT_FACTOR_LU;
2246f6224b95SHong Zhang   ierr = PetscFree(inA->solvertype);CHKERRQ(ierr);
2247f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&inA->solvertype);CHKERRQ(ierr);
22482d61bbb3SSatish Balay 
2249c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2250cf242676SKris Buschelman 
2251c38d4ed2SBarry Smith   ierr   = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
22526bf464f9SBarry Smith   ierr   = ISDestroy(&a->row);CHKERRQ(ierr);
2253c3122656SLisandro Dalcin   a->row = row;
2254c38d4ed2SBarry Smith   ierr   = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
22556bf464f9SBarry Smith   ierr   = ISDestroy(&a->col);CHKERRQ(ierr);
2256c3122656SLisandro Dalcin   a->col = col;
2257c38d4ed2SBarry Smith 
2258c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
22596bf464f9SBarry Smith   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
22604c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
22613bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr);
2262c38d4ed2SBarry Smith 
2263ace3abfcSBarry Smith   ierr = MatSeqBAIJSetNumericFactorization_inplace(inA,(PetscBool)(row_identity && col_identity));CHKERRQ(ierr);
2264c38d4ed2SBarry Smith   if (!a->solve_work) {
2265854ce69bSBarry Smith     ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr);
22663bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2267c38d4ed2SBarry Smith   }
2268719d5645SBarry Smith   ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr);
22692d61bbb3SSatish Balay   PetscFunctionReturn(0);
22702d61bbb3SSatish Balay }
2271d9b7c43dSSatish Balay 
22727087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
227327a8da17SBarry Smith {
227427a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)mat->data;
2275bdb1c0e1SJed Brown   PetscInt    i,nz,mbs;
227627a8da17SBarry Smith 
227727a8da17SBarry Smith   PetscFunctionBegin;
2278b32cb4a7SJed Brown   nz  = baij->maxnz;
2279bdb1c0e1SJed Brown   mbs = baij->mbs;
228027a8da17SBarry Smith   for (i=0; i<nz; i++) {
228127a8da17SBarry Smith     baij->j[i] = indices[i];
228227a8da17SBarry Smith   }
228327a8da17SBarry Smith   baij->nz = nz;
2284bdb1c0e1SJed Brown   for (i=0; i<mbs; i++) {
228527a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
228627a8da17SBarry Smith   }
228727a8da17SBarry Smith   PetscFunctionReturn(0);
228827a8da17SBarry Smith }
228927a8da17SBarry Smith 
229027a8da17SBarry Smith /*@
229127a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
229227a8da17SBarry Smith        in the matrix.
229327a8da17SBarry Smith 
229427a8da17SBarry Smith   Input Parameters:
229527a8da17SBarry Smith +  mat - the SeqBAIJ matrix
229627a8da17SBarry Smith -  indices - the column indices
229727a8da17SBarry Smith 
229815091d37SBarry Smith   Level: advanced
229915091d37SBarry Smith 
230027a8da17SBarry Smith   Notes:
230127a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
230227a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
230327a8da17SBarry Smith   of the MatSetValues() operation.
230427a8da17SBarry Smith 
230527a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2306d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
230727a8da17SBarry Smith 
230827a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
230927a8da17SBarry Smith 
231027a8da17SBarry Smith @*/
23117087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
231227a8da17SBarry Smith {
23134ac538c5SBarry Smith   PetscErrorCode ierr;
231427a8da17SBarry Smith 
231527a8da17SBarry Smith   PetscFunctionBegin;
23160700a824SBarry Smith   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
23174482741eSBarry Smith   PetscValidPointer(indices,2);
23184ac538c5SBarry Smith   ierr = PetscUseMethod(mat,"MatSeqBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr);
231927a8da17SBarry Smith   PetscFunctionReturn(0);
232027a8da17SBarry Smith }
232127a8da17SBarry Smith 
2322985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2323273d9f13SBarry Smith {
2324273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2325dfbe8321SBarry Smith   PetscErrorCode ierr;
2326c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2327273d9f13SBarry Smith   PetscReal      atmp;
232887828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2329273d9f13SBarry Smith   MatScalar      *aa;
2330c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2331273d9f13SBarry Smith 
2332273d9f13SBarry Smith   PetscFunctionBegin;
2333e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2334d0f46423SBarry Smith   bs  = A->rmap->bs;
2335273d9f13SBarry Smith   aa  = a->a;
2336273d9f13SBarry Smith   ai  = a->i;
2337273d9f13SBarry Smith   aj  = a->j;
2338273d9f13SBarry Smith   mbs = a->mbs;
2339273d9f13SBarry Smith 
23402dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
23411ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2342273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2343e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2344273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2345273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2346273d9f13SBarry Smith     brow  = bs*i;
2347273d9f13SBarry Smith     for (j=0; j<ncols; j++) {
2348273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++) {
2349273d9f13SBarry Smith         for (krow=0; krow<bs; krow++) {
2350273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2351273d9f13SBarry Smith           row  = brow + krow;   /* row index */
2352985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2353273d9f13SBarry Smith         }
2354273d9f13SBarry Smith       }
2355273d9f13SBarry Smith       aj++;
2356273d9f13SBarry Smith     }
2357273d9f13SBarry Smith   }
23581ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2359273d9f13SBarry Smith   PetscFunctionReturn(0);
2360273d9f13SBarry Smith }
2361273d9f13SBarry Smith 
23623c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
23633c896bc6SHong Zhang {
23643c896bc6SHong Zhang   PetscErrorCode ierr;
23653c896bc6SHong Zhang 
23663c896bc6SHong Zhang   PetscFunctionBegin;
23673c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
23683c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
23693c896bc6SHong Zhang     Mat_SeqBAIJ *a  = (Mat_SeqBAIJ*)A->data;
23703c896bc6SHong Zhang     Mat_SeqBAIJ *b  = (Mat_SeqBAIJ*)B->data;
2371d88c0aacSHong Zhang     PetscInt    ambs=a->mbs,bmbs=b->mbs,abs=A->rmap->bs,bbs=B->rmap->bs,bs2=abs*abs;
23723c896bc6SHong Zhang 
2373d88c0aacSHong Zhang     if (a->i[ambs] != b->i[bmbs]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzero blocks in matrices A %D and B %D are different",a->i[ambs],b->i[bmbs]);
2374d88c0aacSHong Zhang     if (abs != bbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Block size A %D and B %D are different",abs,bbs);
2375580bdb30SBarry Smith     ierr = PetscArraycpy(b->a,a->a,bs2*a->i[ambs]);CHKERRQ(ierr);
2376cdc753b6SBarry Smith     ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
23773c896bc6SHong Zhang   } else {
23783c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
23793c896bc6SHong Zhang   }
23803c896bc6SHong Zhang   PetscFunctionReturn(0);
23813c896bc6SHong Zhang }
23823c896bc6SHong Zhang 
23834994cf47SJed Brown PetscErrorCode MatSetUp_SeqBAIJ(Mat A)
2384273d9f13SBarry Smith {
2385dfbe8321SBarry Smith   PetscErrorCode ierr;
2386273d9f13SBarry Smith 
2387273d9f13SBarry Smith   PetscFunctionBegin;
2388367daffbSBarry Smith   ierr = MatSeqBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr);
2389273d9f13SBarry Smith   PetscFunctionReturn(0);
2390273d9f13SBarry Smith }
2391273d9f13SBarry Smith 
23928c778c55SBarry Smith PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2393f2a5309cSSatish Balay {
2394f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
23956e111a19SKarl Rupp 
2396f2a5309cSSatish Balay   PetscFunctionBegin;
2397f2a5309cSSatish Balay   *array = a->a;
2398f2a5309cSSatish Balay   PetscFunctionReturn(0);
2399f2a5309cSSatish Balay }
2400f2a5309cSSatish Balay 
24018c778c55SBarry Smith PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2402f2a5309cSSatish Balay {
2403f2a5309cSSatish Balay   PetscFunctionBegin;
2404f2a5309cSSatish Balay   PetscFunctionReturn(0);
2405f2a5309cSSatish Balay }
2406f2a5309cSSatish Balay 
240752768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqBAIJ(Mat Y,Mat X,PetscInt *nnz)
240852768537SHong Zhang {
2409b264fe52SHong Zhang   PetscInt       bs = Y->rmap->bs,mbs = Y->rmap->N/bs;
241052768537SHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
241152768537SHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
2412b264fe52SHong Zhang   PetscErrorCode ierr;
241352768537SHong Zhang 
241452768537SHong Zhang   PetscFunctionBegin;
241552768537SHong Zhang   /* Set the number of nonzeros in the new matrix */
2416b264fe52SHong Zhang   ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr);
241752768537SHong Zhang   PetscFunctionReturn(0);
241852768537SHong Zhang }
241952768537SHong Zhang 
2420f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
242142ee4b1aSHong Zhang {
242242ee4b1aSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data,*y = (Mat_SeqBAIJ*)Y->data;
2423dfbe8321SBarry Smith   PetscErrorCode ierr;
242431ce2d13SHong Zhang   PetscInt       bs=Y->rmap->bs,bs2=bs*bs;
2425e838b9e7SJed Brown   PetscBLASInt   one=1;
242642ee4b1aSHong Zhang 
242742ee4b1aSHong Zhang   PetscFunctionBegin;
242842ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2429f4df32b1SMatthew Knepley     PetscScalar  alpha = a;
2430c5df96a5SBarry Smith     PetscBLASInt bnz;
2431c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
24328b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
2433a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
2434ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2435ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
243642ee4b1aSHong Zhang   } else {
243752768537SHong Zhang     Mat      B;
243852768537SHong Zhang     PetscInt *nnz;
243952768537SHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
244052768537SHong Zhang     ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr);
244152768537SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
244252768537SHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
244352768537SHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
244452768537SHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
244552768537SHong Zhang     ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr);
244652768537SHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(Y,X,nnz);CHKERRQ(ierr);
244752768537SHong Zhang     ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
244852768537SHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
244928be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
245052768537SHong Zhang     ierr = PetscFree(nnz);CHKERRQ(ierr);
245142ee4b1aSHong Zhang   }
245242ee4b1aSHong Zhang   PetscFunctionReturn(0);
245342ee4b1aSHong Zhang }
245442ee4b1aSHong Zhang 
245599cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
245699cafbc1SBarry Smith {
245799cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
245899cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2459dd6ea824SBarry Smith   MatScalar   *aa = a->a;
246099cafbc1SBarry Smith 
246199cafbc1SBarry Smith   PetscFunctionBegin;
246299cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
246399cafbc1SBarry Smith   PetscFunctionReturn(0);
246499cafbc1SBarry Smith }
246599cafbc1SBarry Smith 
246699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
246799cafbc1SBarry Smith {
246899cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
246999cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2470dd6ea824SBarry Smith   MatScalar   *aa = a->a;
247199cafbc1SBarry Smith 
247299cafbc1SBarry Smith   PetscFunctionBegin;
247399cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
247499cafbc1SBarry Smith   PetscFunctionReturn(0);
247599cafbc1SBarry Smith }
247699cafbc1SBarry Smith 
24773acb8795SBarry Smith /*
24783acb8795SBarry Smith     Code almost idential to MatGetColumnIJ_SeqAIJ() should share common code
24793acb8795SBarry Smith */
24801a83f524SJed Brown PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
24813acb8795SBarry Smith {
24823acb8795SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
24833acb8795SBarry Smith   PetscErrorCode ierr;
24843acb8795SBarry Smith   PetscInt       bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs;
24853acb8795SBarry Smith   PetscInt       nz = a->i[m],row,*jj,mr,col;
24863acb8795SBarry Smith 
24873acb8795SBarry Smith   PetscFunctionBegin;
24883acb8795SBarry Smith   *nn = n;
24893acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
2490e7e72b3dSBarry Smith   if (symmetric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not for BAIJ matrices");
2491e7e72b3dSBarry Smith   else {
2492854ce69bSBarry Smith     ierr = PetscCalloc1(n+1,&collengths);CHKERRQ(ierr);
2493854ce69bSBarry Smith     ierr = PetscMalloc1(n+1,&cia);CHKERRQ(ierr);
2494854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&cja);CHKERRQ(ierr);
24953acb8795SBarry Smith     jj   = a->j;
24963acb8795SBarry Smith     for (i=0; i<nz; i++) {
24973acb8795SBarry Smith       collengths[jj[i]]++;
24983acb8795SBarry Smith     }
24993acb8795SBarry Smith     cia[0] = oshift;
25003acb8795SBarry Smith     for (i=0; i<n; i++) {
25013acb8795SBarry Smith       cia[i+1] = cia[i] + collengths[i];
25023acb8795SBarry Smith     }
2503580bdb30SBarry Smith     ierr = PetscArrayzero(collengths,n);CHKERRQ(ierr);
25043acb8795SBarry Smith     jj   = a->j;
25053acb8795SBarry Smith     for (row=0; row<m; row++) {
25063acb8795SBarry Smith       mr = a->i[row+1] - a->i[row];
25073acb8795SBarry Smith       for (i=0; i<mr; i++) {
25083acb8795SBarry Smith         col = *jj++;
250926fbe8dcSKarl Rupp 
25103acb8795SBarry Smith         cja[cia[col] + collengths[col]++ - oshift] = row + oshift;
25113acb8795SBarry Smith       }
25123acb8795SBarry Smith     }
25133acb8795SBarry Smith     ierr = PetscFree(collengths);CHKERRQ(ierr);
25143acb8795SBarry Smith     *ia  = cia; *ja = cja;
25153acb8795SBarry Smith   }
25163acb8795SBarry Smith   PetscFunctionReturn(0);
25173acb8795SBarry Smith }
25183acb8795SBarry Smith 
25191a83f524SJed Brown PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
25203acb8795SBarry Smith {
25213acb8795SBarry Smith   PetscErrorCode ierr;
25223acb8795SBarry Smith 
25233acb8795SBarry Smith   PetscFunctionBegin;
25243acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
25253acb8795SBarry Smith   ierr = PetscFree(*ia);CHKERRQ(ierr);
25263acb8795SBarry Smith   ierr = PetscFree(*ja);CHKERRQ(ierr);
25273acb8795SBarry Smith   PetscFunctionReturn(0);
25283acb8795SBarry Smith }
25293acb8795SBarry Smith 
2530525d23c0SHong Zhang /*
2531525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ_Color() and MatRestoreColumnIJ_SeqBAIJ_Color() are customized from
2532525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ() and MatRestoreColumnIJ_SeqBAIJ() by adding an output
2533040ebd07SHong Zhang  spidx[], index of a->a, to be used in MatTransposeColoringCreate() and MatFDColoringCreate()
2534525d23c0SHong Zhang  */
2535525d23c0SHong Zhang PetscErrorCode MatGetColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool  *done)
2536f6d58c54SBarry Smith {
2537525d23c0SHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2538f6d58c54SBarry Smith   PetscErrorCode ierr;
2539c0349474SHong Zhang   PetscInt       i,*collengths,*cia,*cja,n=a->nbs,m=a->mbs;
2540525d23c0SHong Zhang   PetscInt       nz = a->i[m],row,*jj,mr,col;
2541525d23c0SHong Zhang   PetscInt       *cspidx;
2542f6d58c54SBarry Smith 
2543f6d58c54SBarry Smith   PetscFunctionBegin;
2544525d23c0SHong Zhang   *nn = n;
2545525d23c0SHong Zhang   if (!ia) PetscFunctionReturn(0);
2546f6d58c54SBarry Smith 
2547854ce69bSBarry Smith   ierr = PetscCalloc1(n+1,&collengths);CHKERRQ(ierr);
2548854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&cia);CHKERRQ(ierr);
2549854ce69bSBarry Smith   ierr = PetscMalloc1(nz+1,&cja);CHKERRQ(ierr);
2550854ce69bSBarry Smith   ierr = PetscMalloc1(nz+1,&cspidx);CHKERRQ(ierr);
2551525d23c0SHong Zhang   jj   = a->j;
2552525d23c0SHong Zhang   for (i=0; i<nz; i++) {
2553525d23c0SHong Zhang     collengths[jj[i]]++;
2554f6d58c54SBarry Smith   }
2555525d23c0SHong Zhang   cia[0] = oshift;
2556525d23c0SHong Zhang   for (i=0; i<n; i++) {
2557525d23c0SHong Zhang     cia[i+1] = cia[i] + collengths[i];
2558525d23c0SHong Zhang   }
2559580bdb30SBarry Smith   ierr = PetscArrayzero(collengths,n);CHKERRQ(ierr);
2560525d23c0SHong Zhang   jj   = a->j;
2561525d23c0SHong Zhang   for (row=0; row<m; row++) {
2562525d23c0SHong Zhang     mr = a->i[row+1] - a->i[row];
2563525d23c0SHong Zhang     for (i=0; i<mr; i++) {
2564525d23c0SHong Zhang       col = *jj++;
2565525d23c0SHong Zhang       cspidx[cia[col] + collengths[col] - oshift] = a->i[row] + i; /* index of a->j */
2566525d23c0SHong Zhang       cja[cia[col] + collengths[col]++ - oshift]  = row + oshift;
2567525d23c0SHong Zhang     }
2568525d23c0SHong Zhang   }
2569525d23c0SHong Zhang   ierr   = PetscFree(collengths);CHKERRQ(ierr);
2570525d23c0SHong Zhang   *ia    = cia; *ja = cja;
2571525d23c0SHong Zhang   *spidx = cspidx;
2572525d23c0SHong Zhang   PetscFunctionReturn(0);
2573f6d58c54SBarry Smith }
2574f6d58c54SBarry Smith 
2575525d23c0SHong Zhang PetscErrorCode MatRestoreColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool  *done)
2576525d23c0SHong Zhang {
2577525d23c0SHong Zhang   PetscErrorCode ierr;
2578f6d58c54SBarry Smith 
2579525d23c0SHong Zhang   PetscFunctionBegin;
2580525d23c0SHong Zhang   ierr = MatRestoreColumnIJ_SeqBAIJ(A,oshift,symmetric,inodecompressed,n,ia,ja,done);CHKERRQ(ierr);
2581525d23c0SHong Zhang   ierr = PetscFree(*spidx);CHKERRQ(ierr);
2582f6d58c54SBarry Smith   PetscFunctionReturn(0);
2583f6d58c54SBarry Smith }
258499cafbc1SBarry Smith 
25857d68702bSBarry Smith PetscErrorCode MatShift_SeqBAIJ(Mat Y,PetscScalar a)
25867d68702bSBarry Smith {
25877d68702bSBarry Smith   PetscErrorCode ierr;
25887d68702bSBarry Smith   Mat_SeqBAIJ     *aij = (Mat_SeqBAIJ*)Y->data;
25897d68702bSBarry Smith 
25907d68702bSBarry Smith   PetscFunctionBegin;
25916f33a894SBarry Smith   if (!Y->preallocated || !aij->nz) {
25927d68702bSBarry Smith     ierr = MatSeqBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
25937d68702bSBarry Smith   }
25947d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
25957d68702bSBarry Smith   PetscFunctionReturn(0);
25967d68702bSBarry Smith }
25977d68702bSBarry Smith 
25982593348eSBarry Smith /* -------------------------------------------------------------------*/
25993964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2600cc2dc46cSBarry Smith                                        MatGetRow_SeqBAIJ,
2601cc2dc46cSBarry Smith                                        MatRestoreRow_SeqBAIJ,
2602cc2dc46cSBarry Smith                                        MatMult_SeqBAIJ_N,
260397304618SKris Buschelman                                /* 4*/  MatMultAdd_SeqBAIJ_N,
26047c922b88SBarry Smith                                        MatMultTranspose_SeqBAIJ,
26057c922b88SBarry Smith                                        MatMultTransposeAdd_SeqBAIJ,
2606db4efbfdSBarry Smith                                        0,
2607cc2dc46cSBarry Smith                                        0,
2608cc2dc46cSBarry Smith                                        0,
260997304618SKris Buschelman                                /* 10*/ 0,
2610cc2dc46cSBarry Smith                                        MatLUFactor_SeqBAIJ,
2611cc2dc46cSBarry Smith                                        0,
2612b6490206SBarry Smith                                        0,
2613f2501298SSatish Balay                                        MatTranspose_SeqBAIJ,
261497304618SKris Buschelman                                /* 15*/ MatGetInfo_SeqBAIJ,
2615cc2dc46cSBarry Smith                                        MatEqual_SeqBAIJ,
2616cc2dc46cSBarry Smith                                        MatGetDiagonal_SeqBAIJ,
2617cc2dc46cSBarry Smith                                        MatDiagonalScale_SeqBAIJ,
2618cc2dc46cSBarry Smith                                        MatNorm_SeqBAIJ,
261997304618SKris Buschelman                                /* 20*/ 0,
2620cc2dc46cSBarry Smith                                        MatAssemblyEnd_SeqBAIJ,
2621cc2dc46cSBarry Smith                                        MatSetOption_SeqBAIJ,
2622cc2dc46cSBarry Smith                                        MatZeroEntries_SeqBAIJ,
2623d519adbfSMatthew Knepley                                /* 24*/ MatZeroRows_SeqBAIJ,
2624db4efbfdSBarry Smith                                        0,
2625db4efbfdSBarry Smith                                        0,
2626db4efbfdSBarry Smith                                        0,
2627db4efbfdSBarry Smith                                        0,
26284994cf47SJed Brown                                /* 29*/ MatSetUp_SeqBAIJ,
2629db4efbfdSBarry Smith                                        0,
2630db4efbfdSBarry Smith                                        0,
26318c778c55SBarry Smith                                        0,
26328c778c55SBarry Smith                                        0,
2633d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_SeqBAIJ,
2634cc2dc46cSBarry Smith                                        0,
2635cc2dc46cSBarry Smith                                        0,
2636cc2dc46cSBarry Smith                                        MatILUFactor_SeqBAIJ,
2637cc2dc46cSBarry Smith                                        0,
2638d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_SeqBAIJ,
26397dae84e0SHong Zhang                                        MatCreateSubMatrices_SeqBAIJ,
2640cc2dc46cSBarry Smith                                        MatIncreaseOverlap_SeqBAIJ,
2641cc2dc46cSBarry Smith                                        MatGetValues_SeqBAIJ,
26423c896bc6SHong Zhang                                        MatCopy_SeqBAIJ,
2643d519adbfSMatthew Knepley                                /* 44*/ 0,
2644cc2dc46cSBarry Smith                                        MatScale_SeqBAIJ,
26457d68702bSBarry Smith                                        MatShift_SeqBAIJ,
2646cc2dc46cSBarry Smith                                        0,
264797b48c8fSBarry Smith                                        MatZeroRowsColumns_SeqBAIJ,
2648f73d5cc4SBarry Smith                                /* 49*/ 0,
26493b2fbd54SBarry Smith                                        MatGetRowIJ_SeqBAIJ,
265092c4ed94SBarry Smith                                        MatRestoreRowIJ_SeqBAIJ,
26513acb8795SBarry Smith                                        MatGetColumnIJ_SeqBAIJ,
26523acb8795SBarry Smith                                        MatRestoreColumnIJ_SeqBAIJ,
265393dfae19SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
2654cc2dc46cSBarry Smith                                        0,
2655cc2dc46cSBarry Smith                                        0,
2656cc2dc46cSBarry Smith                                        0,
2657d3825aa8SBarry Smith                                        MatSetValuesBlocked_SeqBAIJ,
26587dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_SeqBAIJ,
2659b9b97703SBarry Smith                                        MatDestroy_SeqBAIJ,
2660b9b97703SBarry Smith                                        MatView_SeqBAIJ,
2661357abbc8SBarry Smith                                        0,
2662273d9f13SBarry Smith                                        0,
2663d519adbfSMatthew Knepley                                /* 64*/ 0,
2664273d9f13SBarry Smith                                        0,
2665273d9f13SBarry Smith                                        0,
2666273d9f13SBarry Smith                                        0,
2667273d9f13SBarry Smith                                        0,
2668d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_SeqBAIJ,
2669273d9f13SBarry Smith                                        0,
2670c87e5d42SMatthew Knepley                                        MatConvert_Basic,
267197304618SKris Buschelman                                        0,
267297304618SKris Buschelman                                        0,
2673d519adbfSMatthew Knepley                                /* 74*/ 0,
2674f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
267597304618SKris Buschelman                                        0,
267697304618SKris Buschelman                                        0,
267797304618SKris Buschelman                                        0,
2678d519adbfSMatthew Knepley                                /* 79*/ 0,
267997304618SKris Buschelman                                        0,
268097304618SKris Buschelman                                        0,
268197304618SKris Buschelman                                        0,
26825bba2384SShri Abhyankar                                        MatLoad_SeqBAIJ,
2683d519adbfSMatthew Knepley                                /* 84*/ 0,
2684b01c7715SBarry Smith                                        0,
2685b01c7715SBarry Smith                                        0,
2686b01c7715SBarry Smith                                        0,
2687865e5f61SKris Buschelman                                        0,
2688d519adbfSMatthew Knepley                                /* 89*/ 0,
2689865e5f61SKris Buschelman                                        0,
2690865e5f61SKris Buschelman                                        0,
2691865e5f61SKris Buschelman                                        0,
2692865e5f61SKris Buschelman                                        0,
2693d519adbfSMatthew Knepley                                /* 94*/ 0,
2694865e5f61SKris Buschelman                                        0,
2695865e5f61SKris Buschelman                                        0,
269699cafbc1SBarry Smith                                        0,
269799cafbc1SBarry Smith                                        0,
2698d519adbfSMatthew Knepley                                /* 99*/ 0,
269999cafbc1SBarry Smith                                        0,
270099cafbc1SBarry Smith                                        0,
270199cafbc1SBarry Smith                                        0,
270299cafbc1SBarry Smith                                        0,
2703d519adbfSMatthew Knepley                                /*104*/ 0,
270499cafbc1SBarry Smith                                        MatRealPart_SeqBAIJ,
27052af78befSBarry Smith                                        MatImaginaryPart_SeqBAIJ,
27062af78befSBarry Smith                                        0,
27072af78befSBarry Smith                                        0,
2708d519adbfSMatthew Knepley                                /*109*/ 0,
27092af78befSBarry Smith                                        0,
27102af78befSBarry Smith                                        0,
27112af78befSBarry Smith                                        0,
2712547795f9SHong Zhang                                        MatMissingDiagonal_SeqBAIJ,
2713547795f9SHong Zhang                                /*114*/ 0,
2714547795f9SHong Zhang                                        0,
2715547795f9SHong Zhang                                        0,
2716547795f9SHong Zhang                                        0,
2717547795f9SHong Zhang                                        0,
2718547795f9SHong Zhang                                /*119*/ 0,
2719547795f9SHong Zhang                                        0,
2720547795f9SHong Zhang                                        MatMultHermitianTranspose_SeqBAIJ,
2721d6037b41SHong Zhang                                        MatMultHermitianTransposeAdd_SeqBAIJ,
2722d6037b41SHong Zhang                                        0,
2723bbead8a2SBarry Smith                                /*124*/ 0,
2724bbead8a2SBarry Smith                                        0,
27253964eb88SJed Brown                                        MatInvertBlockDiagonal_SeqBAIJ,
27263964eb88SJed Brown                                        0,
27273964eb88SJed Brown                                        0,
27283964eb88SJed Brown                                /*129*/ 0,
27293964eb88SJed Brown                                        0,
27303964eb88SJed Brown                                        0,
27313964eb88SJed Brown                                        0,
27323964eb88SJed Brown                                        0,
27333964eb88SJed Brown                                /*134*/ 0,
27343964eb88SJed Brown                                        0,
27353964eb88SJed Brown                                        0,
27363964eb88SJed Brown                                        0,
27373964eb88SJed Brown                                        0,
273846533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2739f9426fe0SMark Adams                                        0,
27401919a2e2SJed Brown                                        0,
2741bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
2742bdf6f3fcSHong Zhang                                        0,
274386e85357SHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_SeqBAIJ,
274486e85357SHong Zhang                                        MatDestroySubMatrices_SeqBAIJ
274599cafbc1SBarry Smith };
27462593348eSBarry Smith 
27477087cfbeSBarry Smith PetscErrorCode  MatStoreValues_SeqBAIJ(Mat mat)
27483e90b805SBarry Smith {
27493e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
27508ece6314SShri Abhyankar   PetscInt       nz   = aij->i[aij->mbs]*aij->bs2;
2751dfbe8321SBarry Smith   PetscErrorCode ierr;
27523e90b805SBarry Smith 
27533e90b805SBarry Smith   PetscFunctionBegin;
2754e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
27553e90b805SBarry Smith 
27563e90b805SBarry Smith   /* allocate space for values if not already there */
27573e90b805SBarry Smith   if (!aij->saved_values) {
2758854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr);
27593bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(nz+1)*sizeof(PetscScalar));CHKERRQ(ierr);
27603e90b805SBarry Smith   }
27613e90b805SBarry Smith 
27623e90b805SBarry Smith   /* copy values over */
2763580bdb30SBarry Smith   ierr = PetscArraycpy(aij->saved_values,aij->a,nz);CHKERRQ(ierr);
27643e90b805SBarry Smith   PetscFunctionReturn(0);
27653e90b805SBarry Smith }
27663e90b805SBarry Smith 
27677087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_SeqBAIJ(Mat mat)
27683e90b805SBarry Smith {
27693e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
27706849ba73SBarry Smith   PetscErrorCode ierr;
27718ece6314SShri Abhyankar   PetscInt       nz = aij->i[aij->mbs]*aij->bs2;
27723e90b805SBarry Smith 
27733e90b805SBarry Smith   PetscFunctionBegin;
2774e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
2775e7e72b3dSBarry Smith   if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
27763e90b805SBarry Smith 
27773e90b805SBarry Smith   /* copy values over */
2778580bdb30SBarry Smith   ierr = PetscArraycpy(aij->a,aij->saved_values,nz);CHKERRQ(ierr);
27793e90b805SBarry Smith   PetscFunctionReturn(0);
27803e90b805SBarry Smith }
27813e90b805SBarry Smith 
2782cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
2783cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2784273d9f13SBarry Smith 
2785b5b72c8aSIrina Sokolova PetscErrorCode  MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2786a23d5eceSKris Buschelman {
2787a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
27886849ba73SBarry Smith   PetscErrorCode ierr;
2789535b19f3SBarry Smith   PetscInt       i,mbs,nbs,bs2;
27908afaa268SBarry Smith   PetscBool      flg = PETSC_FALSE,skipallocation = PETSC_FALSE,realalloc = PETSC_FALSE;
2791a23d5eceSKris Buschelman 
2792a23d5eceSKris Buschelman   PetscFunctionBegin;
27932576faa2SJed Brown   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;
2794ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2795ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2796ab93d7beSBarry Smith     nz             = 0;
2797ab93d7beSBarry Smith   }
27988c07d4e3SBarry Smith 
279933d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
280026283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
280126283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2802e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2803899cda47SBarry Smith 
2804899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2805899cda47SBarry Smith 
2806d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2807d0f46423SBarry Smith   nbs = B->cmap->n/bs;
2808a23d5eceSKris Buschelman   bs2 = bs*bs;
2809a23d5eceSKris Buschelman 
281065e19b50SBarry Smith   if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs);
2811a23d5eceSKris Buschelman 
2812a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2813e32f2f54SBarry Smith   if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
2814a23d5eceSKris Buschelman   if (nnz) {
2815a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
2816e32f2f54SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
2817e32f2f54SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
2818a23d5eceSKris Buschelman     }
2819a23d5eceSKris Buschelman   }
2820a23d5eceSKris Buschelman 
2821a23d5eceSKris Buschelman   b    = (Mat_SeqBAIJ*)B->data;
2822ce94432eSBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
28238afaa268SBarry Smith   ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for block size (slow)",NULL,flg,&flg,NULL);CHKERRQ(ierr);
28248c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
28258c07d4e3SBarry Smith 
2826a23d5eceSKris Buschelman   if (!flg) {
2827a23d5eceSKris Buschelman     switch (bs) {
2828a23d5eceSKris Buschelman     case 1:
2829a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_1;
2830a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_1;
2831a23d5eceSKris Buschelman       break;
2832a23d5eceSKris Buschelman     case 2:
2833a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_2;
2834a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_2;
2835a23d5eceSKris Buschelman       break;
2836a23d5eceSKris Buschelman     case 3:
2837a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_3;
2838a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_3;
2839a23d5eceSKris Buschelman       break;
2840a23d5eceSKris Buschelman     case 4:
2841a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_4;
2842a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_4;
2843a23d5eceSKris Buschelman       break;
2844a23d5eceSKris Buschelman     case 5:
2845a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_5;
2846a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_5;
2847a23d5eceSKris Buschelman       break;
2848a23d5eceSKris Buschelman     case 6:
2849a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_6;
2850a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_6;
2851a23d5eceSKris Buschelman       break;
2852a23d5eceSKris Buschelman     case 7:
2853a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_7;
2854a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_7;
2855a23d5eceSKris Buschelman       break;
285696e086a2SDaniel Kokron     case 9:
28575f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
285896e086a2SDaniel Kokron       B->ops->mult    = MatMult_SeqBAIJ_9_AVX2;
285996e086a2SDaniel Kokron       B->ops->multadd = MatMultAdd_SeqBAIJ_9_AVX2;
286096e086a2SDaniel Kokron #else
286196e086a2SDaniel Kokron       B->ops->mult    = MatMult_SeqBAIJ_N;
286296e086a2SDaniel Kokron       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
286396e086a2SDaniel Kokron #endif
286496e086a2SDaniel Kokron       break;
2865ebada01fSBarry Smith     case 11:
2866ebada01fSBarry Smith       B->ops->mult    = MatMult_SeqBAIJ_11;
2867ebada01fSBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_11;
2868ebada01fSBarry Smith       break;
28698ab949d8SShri Abhyankar     case 15:
2870832cc040SShri Abhyankar       B->ops->mult    = MatMult_SeqBAIJ_15_ver1;
2871de80f912SBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
28728ab949d8SShri Abhyankar       break;
2873a23d5eceSKris Buschelman     default:
2874a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_N;
2875a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
2876a23d5eceSKris Buschelman       break;
2877a23d5eceSKris Buschelman     }
2878a23d5eceSKris Buschelman   }
2879e48d15efSToby Isaac   B->ops->sor = MatSOR_SeqBAIJ;
2880a23d5eceSKris Buschelman   b->mbs = mbs;
2881a23d5eceSKris Buschelman   b->nbs = nbs;
2882ab93d7beSBarry Smith   if (!skipallocation) {
28832ee49352SLisandro Dalcin     if (!b->imax) {
2884dcca6d9dSJed Brown       ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr);
28853bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr);
288626fbe8dcSKarl Rupp 
28874fd072dbSBarry Smith       b->free_imax_ilen = PETSC_TRUE;
28882ee49352SLisandro Dalcin     }
2889ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
289026fbe8dcSKarl Rupp     for (i=0; i<mbs; i++) b->ilen[i] = 0;
2891a23d5eceSKris Buschelman     if (!nnz) {
2892a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2893c62bd62aSJed Brown       else if (nz < 0) nz = 1;
28945d2a9ed1SStefano Zampini       nz = PetscMin(nz,nbs);
2895a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
2896a23d5eceSKris Buschelman       nz = nz*mbs;
2897a23d5eceSKris Buschelman     } else {
2898a23d5eceSKris Buschelman       nz = 0;
2899a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
2900a23d5eceSKris Buschelman     }
2901a23d5eceSKris Buschelman 
2902a23d5eceSKris Buschelman     /* allocate the matrix space */
29032ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
2904672ba085SHong Zhang     if (B->structure_only) {
2905672ba085SHong Zhang       ierr = PetscMalloc1(nz,&b->j);CHKERRQ(ierr);
2906672ba085SHong Zhang       ierr = PetscMalloc1(B->rmap->N+1,&b->i);CHKERRQ(ierr);
2907672ba085SHong Zhang       ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*sizeof(PetscInt));CHKERRQ(ierr);
2908672ba085SHong Zhang     } else {
2909dcca6d9dSJed Brown       ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr);
29103bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2911580bdb30SBarry Smith       ierr = PetscArrayzero(b->a,nz*bs2);CHKERRQ(ierr);
2912672ba085SHong Zhang     }
2913580bdb30SBarry Smith     ierr = PetscArrayzero(b->j,nz);CHKERRQ(ierr);
291426fbe8dcSKarl Rupp 
2915672ba085SHong Zhang     if (B->structure_only) {
2916672ba085SHong Zhang       b->singlemalloc = PETSC_FALSE;
2917672ba085SHong Zhang       b->free_a       = PETSC_FALSE;
2918672ba085SHong Zhang     } else {
2919a23d5eceSKris Buschelman       b->singlemalloc = PETSC_TRUE;
2920672ba085SHong Zhang       b->free_a       = PETSC_TRUE;
2921672ba085SHong Zhang     }
2922672ba085SHong Zhang     b->free_ij = PETSC_TRUE;
2923672ba085SHong Zhang 
2924a23d5eceSKris Buschelman     b->i[0] = 0;
2925a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
2926a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
2927a23d5eceSKris Buschelman     }
2928672ba085SHong Zhang 
2929e811da20SHong Zhang   } else {
2930e6b907acSBarry Smith     b->free_a  = PETSC_FALSE;
2931e6b907acSBarry Smith     b->free_ij = PETSC_FALSE;
2932ab93d7beSBarry Smith   }
2933a23d5eceSKris Buschelman 
2934a23d5eceSKris Buschelman   b->bs2              = bs2;
2935a23d5eceSKris Buschelman   b->mbs              = mbs;
2936a23d5eceSKris Buschelman   b->nz               = 0;
2937b32cb4a7SJed Brown   b->maxnz            = nz;
2938b32cb4a7SJed Brown   B->info.nz_unneeded = (PetscReal)b->maxnz*bs2;
2939cb7b82ddSBarry Smith   B->was_assembled    = PETSC_FALSE;
2940cb7b82ddSBarry Smith   B->assembled        = PETSC_FALSE;
29412576faa2SJed Brown   if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);}
2942a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2943a23d5eceSKris Buschelman }
2944a23d5eceSKris Buschelman 
2945cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2946725b52f3SLisandro Dalcin {
2947725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
2948725b52f3SLisandro Dalcin   PetscScalar    *values=0;
2949d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_SeqBAIJ*)B->data)->roworiented;
2950725b52f3SLisandro Dalcin   PetscErrorCode ierr;
2951725b52f3SLisandro Dalcin 
2952725b52f3SLisandro Dalcin   PetscFunctionBegin;
2953e32f2f54SBarry Smith   if (bs < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
295426283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
295526283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
295626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
295726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2958e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2959d0f46423SBarry Smith   m    = B->rmap->n/bs;
2960725b52f3SLisandro Dalcin 
296126fbe8dcSKarl Rupp   if (ii[0] != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]);
2962854ce69bSBarry Smith   ierr = PetscMalloc1(m+1, &nnz);CHKERRQ(ierr);
2963725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
2964cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
296526fbe8dcSKarl Rupp     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz);
2966725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
2967725b52f3SLisandro Dalcin     nnz[i] = nz;
2968725b52f3SLisandro Dalcin   }
2969725b52f3SLisandro Dalcin   ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
2970725b52f3SLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
2971725b52f3SLisandro Dalcin 
2972725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
2973725b52f3SLisandro Dalcin   if (!values) {
29741795a4d1SJed Brown     ierr = PetscCalloc1(bs*bs*(nz_max+1),&values);CHKERRQ(ierr);
2975725b52f3SLisandro Dalcin   }
2976725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
2977cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2978cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2979cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
29803adadaf3SJed Brown     if (!roworiented) {
2981725b52f3SLisandro Dalcin       ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
29823adadaf3SJed Brown     } else {
29833adadaf3SJed Brown       PetscInt j;
29843adadaf3SJed Brown       for (j=0; j<ncols; j++) {
29853adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
2986d47bf9aaSJed Brown         ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
29873adadaf3SJed Brown       }
29883adadaf3SJed Brown     }
2989725b52f3SLisandro Dalcin   }
2990725b52f3SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2991725b52f3SLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2992725b52f3SLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29937827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2994725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
2995725b52f3SLisandro Dalcin }
2996725b52f3SLisandro Dalcin 
29970bad9183SKris Buschelman /*MC
2998fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
29990bad9183SKris Buschelman    block sparse compressed row format.
30000bad9183SKris Buschelman 
30010bad9183SKris Buschelman    Options Database Keys:
30020bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
30030bad9183SKris Buschelman 
30040bad9183SKris Buschelman   Level: beginner
30050bad9183SKris Buschelman 
3006f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
30070bad9183SKris Buschelman M*/
30080bad9183SKris Buschelman 
3009cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType,MatReuse,Mat*);
3010b24902e0SBarry Smith 
30118cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJ(Mat B)
30122593348eSBarry Smith {
3013dfbe8321SBarry Smith   PetscErrorCode ierr;
3014c1ac3661SBarry Smith   PetscMPIInt    size;
3015b6490206SBarry Smith   Mat_SeqBAIJ    *b;
30163b2fbd54SBarry Smith 
30173a40ed3dSBarry Smith   PetscFunctionBegin;
3018ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
3019e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
3020b6490206SBarry Smith 
3021b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
3022b0a32e0cSBarry Smith   B->data = (void*)b;
3023549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
302426fbe8dcSKarl Rupp 
30252593348eSBarry Smith   b->row          = 0;
30262593348eSBarry Smith   b->col          = 0;
3027e51c0b9cSSatish Balay   b->icol         = 0;
30282593348eSBarry Smith   b->reallocs     = 0;
30293e90b805SBarry Smith   b->saved_values = 0;
30302593348eSBarry Smith 
3031c4992f7dSBarry Smith   b->roworiented        = PETSC_TRUE;
30322593348eSBarry Smith   b->nonew              = 0;
30332593348eSBarry Smith   b->diag               = 0;
30342a1b7f2aSHong Zhang   B->spptr              = 0;
3035b32cb4a7SJed Brown   B->info.nz_unneeded   = (PetscReal)b->maxnz*b->bs2;
3036a9817697SBarry Smith   b->keepnonzeropattern = PETSC_FALSE;
30374e220ebcSLois Curfman McInnes 
3038bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatInvertBlockDiagonal_C",MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
3039bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
3040bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
3041bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
3042bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqaij_C",MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
3043bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
3044bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
3045bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr);
3046bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_SeqBAIJ);CHKERRQ(ierr);
30477ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
3048c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr);
30497ea3e4caSstefano_zampini #endif
3050c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr);
305175d48cdbSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_is_seqbaij_C",MatPtAP_IS_XAIJ);CHKERRQ(ierr);
305217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
30533a40ed3dSBarry Smith   PetscFunctionReturn(0);
30542593348eSBarry Smith }
30552593348eSBarry Smith 
3056ace3abfcSBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
30572593348eSBarry Smith {
3058b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
30596849ba73SBarry Smith   PetscErrorCode ierr;
3060a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
3061de6a44a3SBarry Smith 
30623a40ed3dSBarry Smith   PetscFunctionBegin;
3063e32f2f54SBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix");
30642593348eSBarry Smith 
30654fd072dbSBarry Smith   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
30664fd072dbSBarry Smith     c->imax           = a->imax;
30674fd072dbSBarry Smith     c->ilen           = a->ilen;
30684fd072dbSBarry Smith     c->free_imax_ilen = PETSC_FALSE;
30694fd072dbSBarry Smith   } else {
3070dcca6d9dSJed Brown     ierr = PetscMalloc2(mbs,&c->imax,mbs,&c->ilen);CHKERRQ(ierr);
30713bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)C,2*mbs*sizeof(PetscInt));CHKERRQ(ierr);
3072b6490206SBarry Smith     for (i=0; i<mbs; i++) {
30732593348eSBarry Smith       c->imax[i] = a->imax[i];
30742593348eSBarry Smith       c->ilen[i] = a->ilen[i];
30752593348eSBarry Smith     }
30764fd072dbSBarry Smith     c->free_imax_ilen = PETSC_TRUE;
30774fd072dbSBarry Smith   }
30782593348eSBarry Smith 
30792593348eSBarry Smith   /* allocate the matrix space */
308016a2bf60SHong Zhang   if (mallocmatspace) {
30814fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
30821795a4d1SJed Brown       ierr = PetscCalloc1(bs2*nz,&c->a);CHKERRQ(ierr);
30833bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,a->i[mbs]*bs2*sizeof(PetscScalar));CHKERRQ(ierr);
308426fbe8dcSKarl Rupp 
30854fd072dbSBarry Smith       c->i            = a->i;
30864fd072dbSBarry Smith       c->j            = a->j;
3087379be0ddSLisandro Dalcin       c->singlemalloc = PETSC_FALSE;
3088379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
3089379be0ddSLisandro Dalcin       c->free_ij      = PETSC_FALSE;
30904fd072dbSBarry Smith       c->parent       = A;
30911e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
30921e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
309326fbe8dcSKarl Rupp 
30944fd072dbSBarry Smith       ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr);
30954fd072dbSBarry Smith       ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
30964fd072dbSBarry Smith       ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
30974fd072dbSBarry Smith     } else {
3098dcca6d9dSJed Brown       ierr = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr);
30993bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,a->i[mbs]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
310026fbe8dcSKarl Rupp 
3101c4992f7dSBarry Smith       c->singlemalloc = PETSC_TRUE;
3102379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
31034fd072dbSBarry Smith       c->free_ij      = PETSC_TRUE;
310426fbe8dcSKarl Rupp 
3105580bdb30SBarry Smith       ierr = PetscArraycpy(c->i,a->i,mbs+1);CHKERRQ(ierr);
3106b6490206SBarry Smith       if (mbs > 0) {
3107580bdb30SBarry Smith         ierr = PetscArraycpy(c->j,a->j,nz);CHKERRQ(ierr);
31082e8a6d31SBarry Smith         if (cpvalues == MAT_COPY_VALUES) {
3109580bdb30SBarry Smith           ierr = PetscArraycpy(c->a,a->a,bs2*nz);CHKERRQ(ierr);
31102e8a6d31SBarry Smith         } else {
3111580bdb30SBarry Smith           ierr = PetscArrayzero(c->a,bs2*nz);CHKERRQ(ierr);
31122593348eSBarry Smith         }
31132593348eSBarry Smith       }
31141e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
31151e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
311616a2bf60SHong Zhang     }
31174fd072dbSBarry Smith   }
311816a2bf60SHong Zhang 
31192593348eSBarry Smith   c->roworiented = a->roworiented;
31202593348eSBarry Smith   c->nonew       = a->nonew;
312126fbe8dcSKarl Rupp 
31221e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
31231e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
312426fbe8dcSKarl Rupp 
31255c9eb25fSBarry Smith   c->bs2         = a->bs2;
31265c9eb25fSBarry Smith   c->mbs         = a->mbs;
31275c9eb25fSBarry Smith   c->nbs         = a->nbs;
31282593348eSBarry Smith 
31292593348eSBarry Smith   if (a->diag) {
31304fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
31314fd072dbSBarry Smith       c->diag      = a->diag;
31324fd072dbSBarry Smith       c->free_diag = PETSC_FALSE;
31334fd072dbSBarry Smith     } else {
3134854ce69bSBarry Smith       ierr = PetscMalloc1(mbs+1,&c->diag);CHKERRQ(ierr);
31353bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
313626fbe8dcSKarl Rupp       for (i=0; i<mbs; i++) c->diag[i] = a->diag[i];
31374fd072dbSBarry Smith       c->free_diag = PETSC_TRUE;
31384fd072dbSBarry Smith     }
313998305bb5SBarry Smith   } else c->diag = 0;
314026fbe8dcSKarl Rupp 
31412593348eSBarry Smith   c->nz         = a->nz;
3142f2cbd3d5SJed Brown   c->maxnz      = a->nz;         /* Since we allocate exactly the right amount */
3143f361c04dSBarry Smith   c->solve_work = NULL;
3144f361c04dSBarry Smith   c->mult_work  = NULL;
3145f361c04dSBarry Smith   c->sor_workt  = NULL;
3146f361c04dSBarry Smith   c->sor_work   = NULL;
314788e51ccdSHong Zhang 
314888e51ccdSHong Zhang   c->compressedrow.use   = a->compressedrow.use;
314988e51ccdSHong Zhang   c->compressedrow.nrows = a->compressedrow.nrows;
3150cd6b891eSBarry Smith   if (a->compressedrow.use) {
315188e51ccdSHong Zhang     i    = a->compressedrow.nrows;
3152dcca6d9dSJed Brown     ierr = PetscMalloc2(i+1,&c->compressedrow.i,i+1,&c->compressedrow.rindex);CHKERRQ(ierr);
31533bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)C,(2*i+1)*sizeof(PetscInt));CHKERRQ(ierr);
3154580bdb30SBarry Smith     ierr = PetscArraycpy(c->compressedrow.i,a->compressedrow.i,i+1);CHKERRQ(ierr);
3155580bdb30SBarry Smith     ierr = PetscArraycpy(c->compressedrow.rindex,a->compressedrow.rindex,i);CHKERRQ(ierr);
315688e51ccdSHong Zhang   } else {
315788e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
31580298fd71SBarry Smith     c->compressedrow.i      = NULL;
31590298fd71SBarry Smith     c->compressedrow.rindex = NULL;
316088e51ccdSHong Zhang   }
3161e56f5c9eSBarry Smith   C->nonzerostate = A->nonzerostate;
316226fbe8dcSKarl Rupp 
3163140e18c1SBarry Smith   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
31643a40ed3dSBarry Smith   PetscFunctionReturn(0);
31652593348eSBarry Smith }
31662593348eSBarry Smith 
3167b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
3168b24902e0SBarry Smith {
3169b24902e0SBarry Smith   PetscErrorCode ierr;
3170b24902e0SBarry Smith 
3171b24902e0SBarry Smith   PetscFunctionBegin;
3172ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
3173d0f46423SBarry Smith   ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr);
31745c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
317598ad0f72SJed Brown   ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
3176b24902e0SBarry Smith   PetscFunctionReturn(0);
3177b24902e0SBarry Smith }
3178b24902e0SBarry Smith 
3179112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqBAIJ(Mat newmat,PetscViewer viewer)
3180f501eaabSShri Abhyankar {
3181f501eaabSShri Abhyankar   Mat_SeqBAIJ    *a;
3182f501eaabSShri Abhyankar   PetscErrorCode ierr;
31833059b6faSBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs = newmat->rmap->bs;
3184f501eaabSShri Abhyankar   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
3185f501eaabSShri Abhyankar   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols;
3186f501eaabSShri Abhyankar   PetscInt       *masked,nmask,tmp,bs2,ishift;
3187f501eaabSShri Abhyankar   PetscMPIInt    size;
3188f501eaabSShri Abhyankar   int            fd;
3189f501eaabSShri Abhyankar   PetscScalar    *aa;
3190ce94432eSBarry Smith   MPI_Comm       comm;
31917f489da9SVaclav Hapla   PetscBool      isbinary;
3192f501eaabSShri Abhyankar 
3193f501eaabSShri Abhyankar   PetscFunctionBegin;
31947f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
31957f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
31967f489da9SVaclav Hapla 
3197c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
3198c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
3199ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
32000298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
32010298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
3202f501eaabSShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
32033059b6faSBarry Smith   if (bs < 0) bs = 1;
3204f501eaabSShri Abhyankar   bs2  = bs*bs;
3205f501eaabSShri Abhyankar 
3206f501eaabSShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3207f501eaabSShri Abhyankar   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor");
3208f501eaabSShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
32099860990eSLisandro Dalcin   ierr = PetscBinaryRead(fd,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
3210f501eaabSShri Abhyankar   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
3211f501eaabSShri Abhyankar   M = header[1]; N = header[2]; nz = header[3];
3212f501eaabSShri Abhyankar 
3213f501eaabSShri Abhyankar   if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
3214f501eaabSShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
3215f501eaabSShri Abhyankar 
3216f501eaabSShri Abhyankar   /*
3217f501eaabSShri Abhyankar      This code adds extra rows to make sure the number of rows is
3218f501eaabSShri Abhyankar     divisible by the blocksize
3219f501eaabSShri Abhyankar   */
3220f501eaabSShri Abhyankar   mbs        = M/bs;
3221f501eaabSShri Abhyankar   extra_rows = bs - M + bs*(mbs);
3222f501eaabSShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
3223f501eaabSShri Abhyankar   else mbs++;
3224f501eaabSShri Abhyankar   if (extra_rows) {
3225f501eaabSShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
3226f501eaabSShri Abhyankar   }
3227f501eaabSShri Abhyankar 
3228f501eaabSShri Abhyankar   /* Set global sizes if not already set */
3229f501eaabSShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) {
3230f501eaabSShri Abhyankar     ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
3231f501eaabSShri Abhyankar   } else { /* Check if the matrix global sizes are correct */
3232f501eaabSShri Abhyankar     ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr);
32334c5b953cSHong Zhang     if (rows < 0 && cols < 0) { /* user might provide local size instead of global size */
32344c5b953cSHong Zhang       ierr = MatGetLocalSize(newmat,&rows,&cols);CHKERRQ(ierr);
32354c5b953cSHong Zhang     }
3236f501eaabSShri Abhyankar     if (M != rows ||  N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
3237f501eaabSShri Abhyankar   }
3238f501eaabSShri Abhyankar 
3239f501eaabSShri Abhyankar   /* read in row lengths */
3240854ce69bSBarry Smith   ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
32419860990eSLisandro Dalcin   ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr);
3242f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
3243f501eaabSShri Abhyankar 
3244f501eaabSShri Abhyankar   /* read in column indices */
3245854ce69bSBarry Smith   ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr);
32469860990eSLisandro Dalcin   ierr = PetscBinaryRead(fd,jj,nz,NULL,PETSC_INT);CHKERRQ(ierr);
3247f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
3248f501eaabSShri Abhyankar 
3249f501eaabSShri Abhyankar   /* loop over row lengths determining block row lengths */
32501795a4d1SJed Brown   ierr     = PetscCalloc1(mbs,&browlengths);CHKERRQ(ierr);
3251dcca6d9dSJed Brown   ierr     = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr);
3252580bdb30SBarry Smith   ierr     = PetscArrayzero(mask,mbs);CHKERRQ(ierr);
3253f501eaabSShri Abhyankar   rowcount = 0;
3254f501eaabSShri Abhyankar   nzcount  = 0;
3255f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) {
3256f501eaabSShri Abhyankar     nmask = 0;
3257f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3258f501eaabSShri Abhyankar       kmax = rowlengths[rowcount];
3259f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3260f501eaabSShri Abhyankar         tmp = jj[nzcount++]/bs;
3261f501eaabSShri Abhyankar         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
3262f501eaabSShri Abhyankar       }
3263f501eaabSShri Abhyankar       rowcount++;
3264f501eaabSShri Abhyankar     }
3265f501eaabSShri Abhyankar     browlengths[i] += nmask;
3266f501eaabSShri Abhyankar     /* zero out the mask elements we set */
3267f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3268f501eaabSShri Abhyankar   }
3269f501eaabSShri Abhyankar 
32702f480046SShri Abhyankar   /* Do preallocation  */
3271367daffbSBarry Smith   ierr = MatSeqBAIJSetPreallocation(newmat,bs,0,browlengths);CHKERRQ(ierr);
3272f501eaabSShri Abhyankar   a    = (Mat_SeqBAIJ*)newmat->data;
3273f501eaabSShri Abhyankar 
3274f501eaabSShri Abhyankar   /* set matrix "i" values */
3275f501eaabSShri Abhyankar   a->i[0] = 0;
3276f501eaabSShri Abhyankar   for (i=1; i<= mbs; i++) {
3277f501eaabSShri Abhyankar     a->i[i]      = a->i[i-1] + browlengths[i-1];
3278f501eaabSShri Abhyankar     a->ilen[i-1] = browlengths[i-1];
3279f501eaabSShri Abhyankar   }
3280f501eaabSShri Abhyankar   a->nz = 0;
3281f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) a->nz += browlengths[i];
3282f501eaabSShri Abhyankar 
3283f501eaabSShri Abhyankar   /* read in nonzero values */
3284854ce69bSBarry Smith   ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr);
32859860990eSLisandro Dalcin   ierr = PetscBinaryRead(fd,aa,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
3286f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
3287f501eaabSShri Abhyankar 
3288f501eaabSShri Abhyankar   /* set "a" and "j" values into matrix */
3289f501eaabSShri Abhyankar   nzcount = 0; jcount = 0;
3290f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) {
3291f501eaabSShri Abhyankar     nzcountb = nzcount;
3292f501eaabSShri Abhyankar     nmask    = 0;
3293f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3294f501eaabSShri Abhyankar       kmax = rowlengths[i*bs+j];
3295f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3296f501eaabSShri Abhyankar         tmp = jj[nzcount++]/bs;
3297f501eaabSShri Abhyankar         if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
3298f501eaabSShri Abhyankar       }
3299f501eaabSShri Abhyankar     }
3300f501eaabSShri Abhyankar     /* sort the masked values */
3301f501eaabSShri Abhyankar     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3302f501eaabSShri Abhyankar 
3303f501eaabSShri Abhyankar     /* set "j" values into matrix */
3304f501eaabSShri Abhyankar     maskcount = 1;
3305f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) {
3306f501eaabSShri Abhyankar       a->j[jcount++]  = masked[j];
3307f501eaabSShri Abhyankar       mask[masked[j]] = maskcount++;
3308f501eaabSShri Abhyankar     }
3309f501eaabSShri Abhyankar     /* set "a" values into matrix */
3310f501eaabSShri Abhyankar     ishift = bs2*a->i[i];
3311f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3312f501eaabSShri Abhyankar       kmax = rowlengths[i*bs+j];
3313f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3314f501eaabSShri Abhyankar         tmp       = jj[nzcountb]/bs;
3315f501eaabSShri Abhyankar         block     = mask[tmp] - 1;
3316f501eaabSShri Abhyankar         point     = jj[nzcountb] - bs*tmp;
3317f501eaabSShri Abhyankar         idx       = ishift + bs2*block + j + bs*point;
3318f501eaabSShri Abhyankar         a->a[idx] = (MatScalar)aa[nzcountb++];
3319f501eaabSShri Abhyankar       }
3320f501eaabSShri Abhyankar     }
3321f501eaabSShri Abhyankar     /* zero out the mask elements we set */
3322f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3323f501eaabSShri Abhyankar   }
3324f501eaabSShri Abhyankar   if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3325f501eaabSShri Abhyankar 
3326f501eaabSShri Abhyankar   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3327f501eaabSShri Abhyankar   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3328f501eaabSShri Abhyankar   ierr = PetscFree(aa);CHKERRQ(ierr);
3329f501eaabSShri Abhyankar   ierr = PetscFree(jj);CHKERRQ(ierr);
3330f501eaabSShri Abhyankar   ierr = PetscFree2(mask,masked);CHKERRQ(ierr);
3331f501eaabSShri Abhyankar 
3332f501eaabSShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3333f501eaabSShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3334f501eaabSShri Abhyankar   PetscFunctionReturn(0);
3335f501eaabSShri Abhyankar }
3336f501eaabSShri Abhyankar 
3337273d9f13SBarry Smith /*@C
3338273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3339273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3340273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3341273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3342273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
33432593348eSBarry Smith 
3344d083f849SBarry Smith    Collective
3345273d9f13SBarry Smith 
3346273d9f13SBarry Smith    Input Parameters:
3347273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3348bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3349bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3350273d9f13SBarry Smith .  m - number of rows
3351273d9f13SBarry Smith .  n - number of columns
335235d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
335335d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
33540298fd71SBarry Smith          (possibly different for each block row) or NULL
3355273d9f13SBarry Smith 
3356273d9f13SBarry Smith    Output Parameter:
3357273d9f13SBarry Smith .  A - the matrix
3358273d9f13SBarry Smith 
3359175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3360f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3361175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3362175b88e8SBarry Smith 
3363273d9f13SBarry Smith    Options Database Keys:
3364273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3365273d9f13SBarry Smith                      block calculations (much slower)
3366273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3367273d9f13SBarry Smith 
3368273d9f13SBarry Smith    Level: intermediate
3369273d9f13SBarry Smith 
3370273d9f13SBarry Smith    Notes:
3371d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3372d1be2dadSMatthew Knepley 
337349a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
337449a6f317SBarry Smith 
337535d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
337635d8aa7fSBarry Smith 
3377273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3378273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3379273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3380273d9f13SBarry Smith 
3381273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
33820298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
3383a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
3384273d9f13SBarry Smith    matrices.
3385273d9f13SBarry Smith 
338669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ()
3387273d9f13SBarry Smith @*/
33887087cfbeSBarry Smith PetscErrorCode  MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3389273d9f13SBarry Smith {
3390dfbe8321SBarry Smith   PetscErrorCode ierr;
3391273d9f13SBarry Smith 
3392273d9f13SBarry Smith   PetscFunctionBegin;
3393f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3394f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3395273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3396367daffbSBarry Smith   ierr = MatSeqBAIJSetPreallocation(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3397273d9f13SBarry Smith   PetscFunctionReturn(0);
3398273d9f13SBarry Smith }
3399273d9f13SBarry Smith 
3400273d9f13SBarry Smith /*@C
3401273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3402273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3403273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3404273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3405273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3406273d9f13SBarry Smith 
3407d083f849SBarry Smith    Collective
3408273d9f13SBarry Smith 
3409273d9f13SBarry Smith    Input Parameters:
34101c4f3114SJed Brown +  B - the matrix
3411bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3412bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3413273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3414273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
34150298fd71SBarry Smith          (possibly different for each block row) or NULL
3416273d9f13SBarry Smith 
3417273d9f13SBarry Smith    Options Database Keys:
3418273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3419273d9f13SBarry Smith                      block calculations (much slower)
3420273d9f13SBarry Smith .   -mat_block_size - size of the blocks to use
3421273d9f13SBarry Smith 
3422273d9f13SBarry Smith    Level: intermediate
3423273d9f13SBarry Smith 
3424273d9f13SBarry Smith    Notes:
342549a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
342649a6f317SBarry Smith 
3427aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3428aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3429aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3430aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3431aa95bbe8SBarry Smith 
3432273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3433273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3434273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3435273d9f13SBarry Smith 
3436273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
34370298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
3438a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
3439273d9f13SBarry Smith 
344069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ(), MatGetInfo()
3441273d9f13SBarry Smith @*/
34427087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3443273d9f13SBarry Smith {
34444ac538c5SBarry Smith   PetscErrorCode ierr;
3445273d9f13SBarry Smith 
3446273d9f13SBarry Smith   PetscFunctionBegin;
34476ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
34486ba663aaSJed Brown   PetscValidType(B,1);
34496ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
34504ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr);
3451273d9f13SBarry Smith   PetscFunctionReturn(0);
3452273d9f13SBarry Smith }
3453a1d92eedSBarry Smith 
3454725b52f3SLisandro Dalcin /*@C
3455725b52f3SLisandro Dalcin    MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format
3456725b52f3SLisandro Dalcin    (the default sequential PETSc format).
3457725b52f3SLisandro Dalcin 
3458d083f849SBarry Smith    Collective
3459725b52f3SLisandro Dalcin 
3460725b52f3SLisandro Dalcin    Input Parameters:
34611c4f3114SJed Brown +  B - the matrix
3462725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3463725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3464725b52f3SLisandro Dalcin -  v - optional values in the matrix
3465725b52f3SLisandro Dalcin 
3466725b52f3SLisandro Dalcin    Level: developer
3467725b52f3SLisandro Dalcin 
34683adadaf3SJed Brown    Notes:
34693adadaf3SJed Brown    The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
34703adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
34713adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
34723adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
34733adadaf3SJed Brown    block column and the second index is over columns within a block.
34743adadaf3SJed Brown 
3475725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3476725b52f3SLisandro Dalcin @*/
34777087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3478725b52f3SLisandro Dalcin {
34794ac538c5SBarry Smith   PetscErrorCode ierr;
3480725b52f3SLisandro Dalcin 
3481725b52f3SLisandro Dalcin   PetscFunctionBegin;
34826ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
34836ba663aaSJed Brown   PetscValidType(B,1);
34846ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
34854ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3486725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3487725b52f3SLisandro Dalcin }
3488725b52f3SLisandro Dalcin 
3489725b52f3SLisandro Dalcin 
3490c75a6043SHong Zhang /*@
3491dfb205c3SBarry Smith      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements provided by the user.
3492c75a6043SHong Zhang 
3493d083f849SBarry Smith      Collective
3494c75a6043SHong Zhang 
3495c75a6043SHong Zhang    Input Parameters:
3496c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3497c75a6043SHong Zhang .  bs - size of block
3498c75a6043SHong Zhang .  m - number of rows
3499c75a6043SHong Zhang .  n - number of columns
3500483a2f95SBarry Smith .  i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row block row of the matrix
3501c75a6043SHong Zhang .  j - column indices
3502c75a6043SHong Zhang -  a - matrix values
3503c75a6043SHong Zhang 
3504c75a6043SHong Zhang    Output Parameter:
3505c75a6043SHong Zhang .  mat - the matrix
3506c75a6043SHong Zhang 
3507dfb205c3SBarry Smith    Level: advanced
3508c75a6043SHong Zhang 
3509c75a6043SHong Zhang    Notes:
3510c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3511c75a6043SHong Zhang     once the matrix is destroyed
3512c75a6043SHong Zhang 
3513c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3514c75a6043SHong Zhang 
3515c75a6043SHong Zhang        The i and j indices are 0 based
3516c75a6043SHong Zhang 
3517dfb205c3SBarry Smith        When block size is greater than 1 the matrix values must be stored using the BAIJ storage format (see the BAIJ code to determine this).
3518dfb205c3SBarry Smith 
35193adadaf3SJed Brown       The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35203adadaf3SJed Brown       the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35213adadaf3SJed Brown       block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35223adadaf3SJed Brown       with column-major ordering within blocks.
3523dfb205c3SBarry Smith 
352469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateBAIJ(), MatCreateSeqBAIJ()
3525c75a6043SHong Zhang 
3526c75a6043SHong Zhang @*/
3527c3c607ccSBarry Smith PetscErrorCode  MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt i[],PetscInt j[],PetscScalar a[],Mat *mat)
3528c75a6043SHong Zhang {
3529c75a6043SHong Zhang   PetscErrorCode ierr;
3530c75a6043SHong Zhang   PetscInt       ii;
3531c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3532c75a6043SHong Zhang 
3533c75a6043SHong Zhang   PetscFunctionBegin;
3534e32f2f54SBarry Smith   if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
353541096f02SStefano Zampini   if (m > 0 && i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3536c75a6043SHong Zhang 
3537c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3538c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3539c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3540367daffbSBarry Smith   ierr = MatSeqBAIJSetPreallocation(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3541c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3542dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&baij->imax,m,&baij->ilen);CHKERRQ(ierr);
35433bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr);
3544c75a6043SHong Zhang 
3545c75a6043SHong Zhang   baij->i = i;
3546c75a6043SHong Zhang   baij->j = j;
3547c75a6043SHong Zhang   baij->a = a;
354826fbe8dcSKarl Rupp 
3549c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3550c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3551e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3552e6b907acSBarry Smith   baij->free_ij      = PETSC_FALSE;
3553c75a6043SHong Zhang 
3554c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3555c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3556c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3557e32f2f54SBarry Smith     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3558c75a6043SHong Zhang #endif
3559c75a6043SHong Zhang   }
3560c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3561c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3562e32f2f54SBarry Smith     if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3563e32f2f54SBarry Smith     if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3564c75a6043SHong Zhang   }
3565c75a6043SHong Zhang #endif
3566c75a6043SHong Zhang 
3567c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3568c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3569c75a6043SHong Zhang   PetscFunctionReturn(0);
3570c75a6043SHong Zhang }
3571bdf6f3fcSHong Zhang 
3572bdf6f3fcSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3573bdf6f3fcSHong Zhang {
3574bdf6f3fcSHong Zhang   PetscErrorCode ierr;
35758761c3d6SHong Zhang   PetscMPIInt    size;
3576bdf6f3fcSHong Zhang 
3577bdf6f3fcSHong Zhang   PetscFunctionBegin;
35788761c3d6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
35798761c3d6SHong Zhang   if (size == 1 && scall == MAT_REUSE_MATRIX) {
35808761c3d6SHong Zhang     ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
35818761c3d6SHong Zhang   } else {
3582bdf6f3fcSHong Zhang     ierr = MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
35838761c3d6SHong Zhang   }
3584bdf6f3fcSHong Zhang   PetscFunctionReturn(0);
3585bdf6f3fcSHong Zhang }
3586