xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 715a17b57e83f9afbb26576e55391e40c0a2b113)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
32593348eSBarry Smith /*
4b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
52593348eSBarry Smith   matrix storage format.
62593348eSBarry Smith */
77c4f633dSBarry Smith #include "../src/mat/impls/baij/seq/baij.h"
8325e03aeSBarry Smith #include "petscsys.h"                     /*I "petscmat.h" I*/
93b547af2SSatish Balay 
10c60f0209SBarry Smith #include "../src/mat/blockinvert.h"
11b01c7715SBarry Smith 
12b01c7715SBarry Smith #undef __FUNCT__
1343516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal"
14bc08b0f1SBarry Smith /*@
1543516a2dSKris Buschelman   MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries.
1643516a2dSKris Buschelman 
1743516a2dSKris Buschelman   Collective on Mat
1843516a2dSKris Buschelman 
1943516a2dSKris Buschelman   Input Parameters:
2043516a2dSKris Buschelman . mat - the matrix
2143516a2dSKris Buschelman 
2243516a2dSKris Buschelman   Level: advanced
2343516a2dSKris Buschelman @*/
2446129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat)
2543516a2dSKris Buschelman {
2643516a2dSKris Buschelman   PetscErrorCode ierr,(*f)(Mat);
2743516a2dSKris Buschelman 
2843516a2dSKris Buschelman   PetscFunctionBegin;
2943516a2dSKris Buschelman   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
3043516a2dSKris Buschelman   if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
3143516a2dSKris Buschelman   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
3243516a2dSKris Buschelman 
3343516a2dSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr);
3443516a2dSKris Buschelman   if (f) {
3543516a2dSKris Buschelman     ierr = (*f)(mat);CHKERRQ(ierr);
3643516a2dSKris Buschelman   } else {
3743516a2dSKris Buschelman     SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ.");
3843516a2dSKris Buschelman   }
3943516a2dSKris Buschelman   PetscFunctionReturn(0);
4043516a2dSKris Buschelman }
4143516a2dSKris Buschelman 
4243516a2dSKris Buschelman EXTERN_C_BEGIN
4343516a2dSKris Buschelman #undef __FUNCT__
44b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ"
4546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A)
46b01c7715SBarry Smith {
47b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
486849ba73SBarry Smith   PetscErrorCode ierr;
49d0f46423SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs;
5097e5c40aSBarry Smith   MatScalar      *v = a->a,*odiag,*diag,*mdiag;
5162bba022SBarry Smith   PetscReal      shift = 0.0;
52b01c7715SBarry Smith 
53b01c7715SBarry Smith   PetscFunctionBegin;
54b01c7715SBarry Smith   if (a->idiagvalid) PetscFunctionReturn(0);
55b01c7715SBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
56b01c7715SBarry Smith   diag_offset = a->diag;
57b01c7715SBarry Smith   if (!a->idiag) {
58b01c7715SBarry Smith     ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr);
59b01c7715SBarry Smith   }
60b01c7715SBarry Smith   diag  = a->idiag;
61b01c7715SBarry Smith   mdiag = a->idiag+bs*bs*mbs;
62b01c7715SBarry Smith   /* factor and invert each block */
63521d7252SBarry Smith   switch (bs){
64ab040260SJed Brown     case 1:
65ab040260SJed Brown       for (i=0; i<mbs; i++) {
66ab040260SJed Brown         odiag = v + 1*diag_offset[i];
67ab040260SJed Brown         diag[0]  = odiag[0];
68ab040260SJed Brown         mdiag[0] = odiag[0];
69ab040260SJed Brown         diag[0]  = 1.0 / (diag[0] + shift);
70ab040260SJed Brown         diag    += 1;
71ab040260SJed Brown         mdiag   += 1;
72ab040260SJed Brown       }
73ab040260SJed Brown       break;
74b01c7715SBarry Smith     case 2:
75b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
76b01c7715SBarry Smith         odiag   = v + 4*diag_offset[i];
77b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
78b01c7715SBarry Smith 	mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
7962bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr);
80b01c7715SBarry Smith 	diag    += 4;
81b01c7715SBarry Smith 	mdiag   += 4;
82b01c7715SBarry Smith       }
83b01c7715SBarry Smith       break;
84b01c7715SBarry Smith     case 3:
85b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
86b01c7715SBarry Smith         odiag    = v + 9*diag_offset[i];
87b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
88b01c7715SBarry Smith         diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
89b01c7715SBarry Smith         diag[8]  = odiag[8];
90b01c7715SBarry Smith         mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
91b01c7715SBarry Smith         mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7];
92b01c7715SBarry Smith         mdiag[8] = odiag[8];
9362bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr);
94b01c7715SBarry Smith 	diag    += 9;
95b01c7715SBarry Smith 	mdiag   += 9;
96b01c7715SBarry Smith       }
97b01c7715SBarry Smith       break;
98b01c7715SBarry Smith     case 4:
99b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
100b01c7715SBarry Smith         odiag  = v + 16*diag_offset[i];
101b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
102b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
10362bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr);
104b01c7715SBarry Smith 	diag  += 16;
105b01c7715SBarry Smith 	mdiag += 16;
106b01c7715SBarry Smith       }
107b01c7715SBarry Smith       break;
108b01c7715SBarry Smith     case 5:
109b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
110b01c7715SBarry Smith         odiag = v + 25*diag_offset[i];
111b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
112b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
11362bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr);
114b01c7715SBarry Smith 	diag  += 25;
115b01c7715SBarry Smith 	mdiag += 25;
116b01c7715SBarry Smith       }
117b01c7715SBarry Smith       break;
118d49b2adcSBarry Smith     case 6:
119d49b2adcSBarry Smith       for (i=0; i<mbs; i++) {
120d49b2adcSBarry Smith         odiag = v + 36*diag_offset[i];
121d49b2adcSBarry Smith         ierr   = PetscMemcpy(diag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
122d49b2adcSBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
123d49b2adcSBarry Smith 	ierr   = Kernel_A_gets_inverse_A_6(diag,shift);CHKERRQ(ierr);
124d49b2adcSBarry Smith 	diag  += 36;
125d49b2adcSBarry Smith 	mdiag += 36;
126d49b2adcSBarry Smith       }
127d49b2adcSBarry Smith       break;
128b01c7715SBarry Smith     default:
129521d7252SBarry Smith       SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs);
130b01c7715SBarry Smith   }
131b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
132b01c7715SBarry Smith   PetscFunctionReturn(0);
133b01c7715SBarry Smith }
13443516a2dSKris Buschelman EXTERN_C_END
135b01c7715SBarry Smith 
136b01c7715SBarry Smith #undef __FUNCT__
1376d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1"
1386d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1396d3beeddSMatthew Knepley {
1406d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
1416d3beeddSMatthew Knepley   PetscScalar        *x,x1,s1;
142dd6ea824SBarry Smith   const PetscScalar  *b;
143dd6ea824SBarry Smith   const MatScalar    *aa = a->a, *idiag,*mdiag,*v;
1446d3beeddSMatthew Knepley   PetscErrorCode     ierr;
1456d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
1466d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
1476d3beeddSMatthew Knepley 
1486d3beeddSMatthew Knepley   PetscFunctionBegin;
1496d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
1506d3beeddSMatthew Knepley   its = its*lits;
1516d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1526d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
1536d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
1546d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
1556d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
1566d3beeddSMatthew Knepley 
1576d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
1586d3beeddSMatthew Knepley 
1596d3beeddSMatthew Knepley   diag  = a->diag;
1606d3beeddSMatthew Knepley   idiag = a->idiag;
1616d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1626d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
1636d3beeddSMatthew Knepley 
1646d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
1656d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
1666d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0];
1676d3beeddSMatthew Knepley       i2     = 1;
1686d3beeddSMatthew Knepley       idiag += 1;
1696d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
1706d3beeddSMatthew Knepley         v     = aa + ai[i];
1716d3beeddSMatthew Knepley         vi    = aj + ai[i];
1726d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
1736d3beeddSMatthew Knepley         s1    = b[i2];
1746d3beeddSMatthew Knepley         while (nz--) {
1756d3beeddSMatthew Knepley           idx  = (*vi++);
1766d3beeddSMatthew Knepley           x1   = x[idx];
1776d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1786d3beeddSMatthew Knepley           v   += 1;
1796d3beeddSMatthew Knepley         }
1806d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
1816d3beeddSMatthew Knepley         idiag   += 1;
1826d3beeddSMatthew Knepley         i2      += 1;
1836d3beeddSMatthew Knepley       }
1846d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
1856d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1866d3beeddSMatthew Knepley     }
1876d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
1886d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1896d3beeddSMatthew Knepley       i2    = 0;
1906d3beeddSMatthew Knepley       mdiag = a->idiag+a->mbs;
1916d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
1926d3beeddSMatthew Knepley         x1      = x[i2];
1936d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1;
1946d3beeddSMatthew Knepley         mdiag  += 1;
1956d3beeddSMatthew Knepley         i2     += 1;
1966d3beeddSMatthew Knepley       }
1976d3beeddSMatthew Knepley       ierr = PetscLogFlops(m);CHKERRQ(ierr);
1986d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
199d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
2006d3beeddSMatthew Knepley     }
2016d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
2026d3beeddSMatthew Knepley       idiag   = a->idiag+a->mbs - 1;
2036d3beeddSMatthew Knepley       i2      = m - 1;
2046d3beeddSMatthew Knepley       x1      = x[i2];
2056d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1;
2066d3beeddSMatthew Knepley       idiag -= 1;
2076d3beeddSMatthew Knepley       i2    -= 1;
2086d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
2096d3beeddSMatthew Knepley         v     = aa + (diag[i]+1);
2106d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
2116d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
2126d3beeddSMatthew Knepley         s1    = x[i2];
2136d3beeddSMatthew Knepley         while (nz--) {
2146d3beeddSMatthew Knepley           idx  = (*vi++);
2156d3beeddSMatthew Knepley           x1   = x[idx];
2166d3beeddSMatthew Knepley           s1  -= v[0]*x1;
2176d3beeddSMatthew Knepley           v   += 1;
2186d3beeddSMatthew Knepley         }
2196d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
220ab040260SJed Brown         idiag   -= 1;
2216d3beeddSMatthew Knepley         i2      -= 1;
2226d3beeddSMatthew Knepley       }
2236d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
2246d3beeddSMatthew Knepley     }
2256d3beeddSMatthew Knepley   } else {
2266d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
2276d3beeddSMatthew Knepley   }
2286d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2296d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
2306d3beeddSMatthew Knepley   PetscFunctionReturn(0);
2316d3beeddSMatthew Knepley }
2326d3beeddSMatthew Knepley 
2336d3beeddSMatthew Knepley #undef __FUNCT__
234b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2"
235c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
236b01c7715SBarry Smith {
237b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
238b01c7715SBarry Smith   PetscScalar        *x,x1,x2,s1,s2;
239dd6ea824SBarry Smith   const PetscScalar  *b;
240dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
241dfbe8321SBarry Smith   PetscErrorCode     ierr;
242c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
243c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
244b01c7715SBarry Smith 
245b01c7715SBarry Smith   PetscFunctionBegin;
24651f519a2SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
247b01c7715SBarry Smith   its = its*lits;
24877431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
249b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
250b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
25171f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
252b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
253b01c7715SBarry Smith 
254b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
255b01c7715SBarry Smith 
256b01c7715SBarry Smith   diag  = a->diag;
257b01c7715SBarry Smith   idiag = a->idiag;
2581ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2591ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
260b01c7715SBarry Smith 
261b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
262b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
263b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[2];
264b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[3];
265b01c7715SBarry Smith       i2     = 2;
266b01c7715SBarry Smith       idiag += 4;
267b01c7715SBarry Smith       for (i=1; i<m; i++) {
268b01c7715SBarry Smith 	v     = aa + 4*ai[i];
269b01c7715SBarry Smith 	vi    = aj + ai[i];
270b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
271b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1];
272b01c7715SBarry Smith 	while (nz--) {
273b01c7715SBarry Smith 	  idx  = 2*(*vi++);
274b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
275b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
276b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
277b01c7715SBarry Smith 	  v   += 4;
278b01c7715SBarry Smith 	}
279b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
280b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
281b01c7715SBarry Smith         idiag   += 4;
282b01c7715SBarry Smith         i2      += 2;
283b01c7715SBarry Smith       }
284b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
285dc0b31edSSatish Balay       ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr);
286b01c7715SBarry Smith     }
287b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
288b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
289b01c7715SBarry Smith       i2    = 0;
290b01c7715SBarry Smith       mdiag = a->idiag+4*a->mbs;
291b01c7715SBarry Smith       for (i=0; i<m; i++) {
292b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1];
293b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[2]*x2;
294b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2;
295b01c7715SBarry Smith         mdiag  += 4;
296b01c7715SBarry Smith         i2     += 2;
297b01c7715SBarry Smith       }
298dc0b31edSSatish Balay       ierr = PetscLogFlops(6.0*m);CHKERRQ(ierr);
299b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
300d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
301b01c7715SBarry Smith     }
302b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
303b01c7715SBarry Smith       idiag   = a->idiag+4*a->mbs - 4;
304b01c7715SBarry Smith       i2      = 2*m - 2;
305b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1];
306b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[2]*x2;
307b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[3]*x2;
308b01c7715SBarry Smith       idiag -= 4;
309b01c7715SBarry Smith       i2    -= 2;
310b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
311b01c7715SBarry Smith 	v     = aa + 4*(diag[i]+1);
312b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
313b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
314b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1];
315b01c7715SBarry Smith 	while (nz--) {
316b01c7715SBarry Smith 	  idx  = 2*(*vi++);
317b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
318b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
319b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
320b01c7715SBarry Smith 	  v   += 4;
321b01c7715SBarry Smith 	}
322b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
323b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
324b01c7715SBarry Smith         idiag   -= 4;
325b01c7715SBarry Smith         i2      -= 2;
326b01c7715SBarry Smith       }
327dc0b31edSSatish Balay       ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr);
328b01c7715SBarry Smith     }
329b01c7715SBarry Smith   } else {
330634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
331b01c7715SBarry Smith   }
3321ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3331ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
334b01c7715SBarry Smith   PetscFunctionReturn(0);
335b01c7715SBarry Smith }
336b01c7715SBarry Smith 
337b01c7715SBarry Smith #undef __FUNCT__
338b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3"
339c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
340b01c7715SBarry Smith {
341b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
342b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,s1,s2,s3;
343dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
344dd6ea824SBarry Smith   const PetscScalar  *b;
345dfbe8321SBarry Smith   PetscErrorCode     ierr;
346c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
347c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
348b01c7715SBarry Smith 
349b01c7715SBarry Smith   PetscFunctionBegin;
350b01c7715SBarry Smith   its = its*lits;
35171f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
35277431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
353b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
354b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
35571f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
356b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
357b01c7715SBarry Smith 
358b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
359b01c7715SBarry Smith 
360b01c7715SBarry Smith   diag  = a->diag;
361b01c7715SBarry Smith   idiag = a->idiag;
3621ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3631ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
364b01c7715SBarry Smith 
365b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
366b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
367b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6];
368b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7];
369b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8];
370b01c7715SBarry Smith       i2     = 3;
371b01c7715SBarry Smith       idiag += 9;
372b01c7715SBarry Smith       for (i=1; i<m; i++) {
373b01c7715SBarry Smith         v     = aa + 9*ai[i];
374b01c7715SBarry Smith         vi    = aj + ai[i];
375b01c7715SBarry Smith         nz    = diag[i] - ai[i];
376b01c7715SBarry Smith         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2];
377b01c7715SBarry Smith         while (nz--) {
378b01c7715SBarry Smith           idx  = 3*(*vi++);
379b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx];x3 = x[2+idx];
380b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
381b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
382b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
383b01c7715SBarry Smith           v   += 9;
384b01c7715SBarry Smith         }
385b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
386b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
387b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
388b01c7715SBarry Smith         idiag   += 9;
389b01c7715SBarry Smith         i2      += 3;
390b01c7715SBarry Smith       }
391b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
392dc0b31edSSatish Balay       ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr);
393b01c7715SBarry Smith     }
394b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
395b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
396b01c7715SBarry Smith       i2    = 0;
397b01c7715SBarry Smith       mdiag = a->idiag+9*a->mbs;
398b01c7715SBarry Smith       for (i=0; i<m; i++) {
399b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
400b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3;
401b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3;
402b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3;
403b01c7715SBarry Smith         mdiag  += 9;
404b01c7715SBarry Smith         i2     += 3;
405b01c7715SBarry Smith       }
406dc0b31edSSatish Balay       ierr = PetscLogFlops(15.0*m);CHKERRQ(ierr);
407b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
408d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
409b01c7715SBarry Smith     }
410b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
411b01c7715SBarry Smith       idiag   = a->idiag+9*a->mbs - 9;
412b01c7715SBarry Smith       i2      = 3*m - 3;
413b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
414b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3;
415b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3;
416b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3;
417b01c7715SBarry Smith       idiag -= 9;
418b01c7715SBarry Smith       i2    -= 3;
419b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
420b01c7715SBarry Smith         v     = aa + 9*(diag[i]+1);
421b01c7715SBarry Smith         vi    = aj + diag[i] + 1;
422b01c7715SBarry Smith         nz    = ai[i+1] - diag[i] - 1;
423b01c7715SBarry Smith         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2];
424b01c7715SBarry Smith         while (nz--) {
425b01c7715SBarry Smith           idx  = 3*(*vi++);
426b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx];
427b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
428b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
429b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
430b01c7715SBarry Smith           v   += 9;
431b01c7715SBarry Smith         }
432b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
433b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
434b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
435b01c7715SBarry Smith         idiag   -= 9;
436b01c7715SBarry Smith         i2      -= 3;
437b01c7715SBarry Smith       }
438dc0b31edSSatish Balay       ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr);
439b01c7715SBarry Smith     }
440b01c7715SBarry Smith   } else {
441634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
442b01c7715SBarry Smith   }
4431ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4441ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
445b01c7715SBarry Smith   PetscFunctionReturn(0);
446b01c7715SBarry Smith }
447b01c7715SBarry Smith 
448b01c7715SBarry Smith #undef __FUNCT__
449b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4"
450c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
451b01c7715SBarry Smith {
452b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
453b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,s1,s2,s3,s4;
454dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
455dd6ea824SBarry Smith   const PetscScalar  *b;
456dfbe8321SBarry Smith   PetscErrorCode     ierr;
457c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
458c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
459b01c7715SBarry Smith 
460b01c7715SBarry Smith   PetscFunctionBegin;
46171f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
462b01c7715SBarry Smith   its = its*lits;
46377431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
464b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
465b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
46671f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
467b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
468b01c7715SBarry Smith 
469b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
470b01c7715SBarry Smith 
471b01c7715SBarry Smith   diag  = a->diag;
472b01c7715SBarry Smith   idiag = a->idiag;
4731ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4741ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
475b01c7715SBarry Smith 
476b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
477b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
478b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8]  + b[3]*idiag[12];
479b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9]  + b[3]*idiag[13];
480b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14];
481b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15];
482b01c7715SBarry Smith       i2     = 4;
483b01c7715SBarry Smith       idiag += 16;
484b01c7715SBarry Smith       for (i=1; i<m; i++) {
485b01c7715SBarry Smith 	v     = aa + 16*ai[i];
486b01c7715SBarry Smith 	vi    = aj + ai[i];
487b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
488b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3];
489b01c7715SBarry Smith 	while (nz--) {
490b01c7715SBarry Smith 	  idx  = 4*(*vi++);
491b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
492b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
493b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
494b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
495b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
496b01c7715SBarry Smith 	  v   += 16;
497b01c7715SBarry Smith 	}
498b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
499b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
500b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
501b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
502b01c7715SBarry Smith         idiag   += 16;
503b01c7715SBarry Smith         i2      += 4;
504b01c7715SBarry Smith       }
505b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
506dc0b31edSSatish Balay       ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr);
507b01c7715SBarry Smith     }
508b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
509b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
510b01c7715SBarry Smith       i2    = 0;
511b01c7715SBarry Smith       mdiag = a->idiag+16*a->mbs;
512b01c7715SBarry Smith       for (i=0; i<m; i++) {
513b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
514b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3  + mdiag[12]*x4;
515b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3  + mdiag[13]*x4;
516b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4;
517b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4;
518b01c7715SBarry Smith         mdiag  += 16;
519b01c7715SBarry Smith         i2     += 4;
520b01c7715SBarry Smith       }
521dc0b31edSSatish Balay       ierr = PetscLogFlops(28.0*m);CHKERRQ(ierr);
522b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
523d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
524b01c7715SBarry Smith     }
525b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
526b01c7715SBarry Smith       idiag   = a->idiag+16*a->mbs - 16;
527b01c7715SBarry Smith       i2      = 4*m - 4;
528b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
529b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3  + idiag[12]*x4;
530b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3  + idiag[13]*x4;
531b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4;
532b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4;
533b01c7715SBarry Smith       idiag -= 16;
534b01c7715SBarry Smith       i2    -= 4;
535b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
536b01c7715SBarry Smith 	v     = aa + 16*(diag[i]+1);
537b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
538b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
539b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3];
540b01c7715SBarry Smith 	while (nz--) {
541b01c7715SBarry Smith 	  idx  = 4*(*vi++);
542b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
543b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
544b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
545b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
546b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
547b01c7715SBarry Smith 	  v   += 16;
548b01c7715SBarry Smith 	}
549b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
550b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
551b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
552b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
553b01c7715SBarry Smith         idiag   -= 16;
554b01c7715SBarry Smith         i2      -= 4;
555b01c7715SBarry Smith       }
556dc0b31edSSatish Balay       ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr);
557b01c7715SBarry Smith     }
558b01c7715SBarry Smith   } else {
559634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
560b01c7715SBarry Smith   }
5611ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5621ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
563b01c7715SBarry Smith   PetscFunctionReturn(0);
564b01c7715SBarry Smith }
565b01c7715SBarry Smith 
566b01c7715SBarry Smith #undef __FUNCT__
567b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5"
568c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
569b01c7715SBarry Smith {
570b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
571b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5;
572dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
573dd6ea824SBarry Smith   const PetscScalar  *b;
574dfbe8321SBarry Smith   PetscErrorCode     ierr;
575c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
576c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
577b01c7715SBarry Smith 
578b01c7715SBarry Smith   PetscFunctionBegin;
57971f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
580b01c7715SBarry Smith   its = its*lits;
58177431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
582b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
583b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
58471f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
585b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
586b01c7715SBarry Smith 
587b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
588b01c7715SBarry Smith 
589b01c7715SBarry Smith   diag  = a->diag;
590b01c7715SBarry Smith   idiag = a->idiag;
5911ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5921ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
593b01c7715SBarry Smith 
594b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
595b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
596b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20];
597b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21];
598b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22];
599b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23];
600b01c7715SBarry Smith       x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24];
601b01c7715SBarry Smith       i2     = 5;
602b01c7715SBarry Smith       idiag += 25;
603b01c7715SBarry Smith       for (i=1; i<m; i++) {
604b01c7715SBarry Smith 	v     = aa + 25*ai[i];
605b01c7715SBarry Smith 	vi    = aj + ai[i];
606b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
607b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4];
608b01c7715SBarry Smith 	while (nz--) {
609b01c7715SBarry Smith 	  idx  = 5*(*vi++);
610b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
611b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
612b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
613b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
614b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
615b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
616b01c7715SBarry Smith 	  v   += 25;
617b01c7715SBarry Smith 	}
618b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
619b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
620b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
621b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
622b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
623b01c7715SBarry Smith         idiag   += 25;
624b01c7715SBarry Smith         i2      += 5;
625b01c7715SBarry Smith       }
626b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
627dc0b31edSSatish Balay       ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr);
628b01c7715SBarry Smith     }
629b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
630b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
631b01c7715SBarry Smith       i2    = 0;
632b01c7715SBarry Smith       mdiag = a->idiag+25*a->mbs;
633b01c7715SBarry Smith       for (i=0; i<m; i++) {
634b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
635b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5;
636b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5;
637b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5;
638b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5;
639b01c7715SBarry Smith         x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5;
640b01c7715SBarry Smith         mdiag  += 25;
641b01c7715SBarry Smith         i2     += 5;
642b01c7715SBarry Smith       }
643dc0b31edSSatish Balay       ierr = PetscLogFlops(45.0*m);CHKERRQ(ierr);
644b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
645d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
646b01c7715SBarry Smith     }
647b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
648b01c7715SBarry Smith       idiag   = a->idiag+25*a->mbs - 25;
649b01c7715SBarry Smith       i2      = 5*m - 5;
650b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
651b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5;
652b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5;
653b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5;
654b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5;
655b01c7715SBarry Smith       x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5;
656b01c7715SBarry Smith       idiag -= 25;
657b01c7715SBarry Smith       i2    -= 5;
658b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
659b01c7715SBarry Smith 	v     = aa + 25*(diag[i]+1);
660b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
661b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
662b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4];
663b01c7715SBarry Smith 	while (nz--) {
664b01c7715SBarry Smith 	  idx  = 5*(*vi++);
665b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
666b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
667b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
668b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
669b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
670b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
671b01c7715SBarry Smith 	  v   += 25;
672b01c7715SBarry Smith 	}
673b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
674b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
675b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
676b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
677b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
678b01c7715SBarry Smith         idiag   -= 25;
679b01c7715SBarry Smith         i2      -= 5;
680b01c7715SBarry Smith       }
681dc0b31edSSatish Balay       ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr);
682b01c7715SBarry Smith     }
683b01c7715SBarry Smith   } else {
684634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
685b01c7715SBarry Smith   }
6861ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
6871ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
688b01c7715SBarry Smith   PetscFunctionReturn(0);
689b01c7715SBarry Smith }
690b01c7715SBarry Smith 
6916d3beeddSMatthew Knepley #undef __FUNCT__
6926d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6"
6936d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
6946d3beeddSMatthew Knepley {
6956d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
6966d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6;
697dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
698dd6ea824SBarry Smith   const PetscScalar  *b;
6996d3beeddSMatthew Knepley   PetscErrorCode     ierr;
7006d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
7016d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
7026d3beeddSMatthew Knepley 
7036d3beeddSMatthew Knepley   PetscFunctionBegin;
7046d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
7056d3beeddSMatthew Knepley   its = its*lits;
7066d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
7076d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
7086d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
7096d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
7106d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
7116d3beeddSMatthew Knepley 
7126d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
7136d3beeddSMatthew Knepley 
7146d3beeddSMatthew Knepley   diag  = a->diag;
7156d3beeddSMatthew Knepley   idiag = a->idiag;
7166d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
7176d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
7186d3beeddSMatthew Knepley 
7196d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
7206d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
7216d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[6]  + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30];
7226d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[7]  + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31];
7236d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[8]  + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32];
7246d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[9]  + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33];
7256d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34];
7266d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35];
7276d3beeddSMatthew Knepley       i2     = 6;
7286d3beeddSMatthew Knepley       idiag += 36;
7296d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
7306d3beeddSMatthew Knepley         v     = aa + 36*ai[i];
7316d3beeddSMatthew Knepley         vi    = aj + ai[i];
7326d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
7336d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5];
7346d3beeddSMatthew Knepley         while (nz--) {
7356d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7366d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7376d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7386d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7396d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7406d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7416d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7426d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7436d3beeddSMatthew Knepley           v   += 36;
7446d3beeddSMatthew Knepley         }
7456d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7466d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7476d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7486d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7496d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7506d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7516d3beeddSMatthew Knepley         idiag   += 36;
7526d3beeddSMatthew Knepley         i2      += 6;
7536d3beeddSMatthew Knepley       }
7546d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
755dc0b31edSSatish Balay       ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr);
7566d3beeddSMatthew Knepley     }
7576d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
7586d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
7596d3beeddSMatthew Knepley       i2    = 0;
7606d3beeddSMatthew Knepley       mdiag = a->idiag+36*a->mbs;
7616d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
7626d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7636d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[6]*x2  + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6;
7646d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2  + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6;
7656d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2  + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6;
7666d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2  + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6;
7676d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6;
7686d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6;
7696d3beeddSMatthew Knepley         mdiag  += 36;
7706d3beeddSMatthew Knepley         i2     += 6;
7716d3beeddSMatthew Knepley       }
772dc0b31edSSatish Balay       ierr = PetscLogFlops(60.0*m);CHKERRQ(ierr);
7736d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
774d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
7756d3beeddSMatthew Knepley     }
7766d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
7776d3beeddSMatthew Knepley       idiag   = a->idiag+36*a->mbs - 36;
7786d3beeddSMatthew Knepley       i2      = 6*m - 6;
7796d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7806d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[6]*x2  + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6;
7816d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[7]*x2  + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6;
7826d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[8]*x2  + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6;
7836d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[9]*x2  + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6;
7846d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6;
7856d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6;
7866d3beeddSMatthew Knepley       idiag -= 36;
7876d3beeddSMatthew Knepley       i2    -= 6;
7886d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
7896d3beeddSMatthew Knepley         v     = aa + 36*(diag[i]+1);
7906d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
7916d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
7926d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5];
7936d3beeddSMatthew Knepley         while (nz--) {
7946d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7956d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7966d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7976d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7986d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7996d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
8006d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
8016d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
8026d3beeddSMatthew Knepley           v   += 36;
8036d3beeddSMatthew Knepley         }
8046d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
8056d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
8066d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
8076d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
8086d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
8096d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
8106d3beeddSMatthew Knepley         idiag   -= 36;
8116d3beeddSMatthew Knepley         i2      -= 6;
8126d3beeddSMatthew Knepley       }
813dc0b31edSSatish Balay       ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr);
8146d3beeddSMatthew Knepley     }
8156d3beeddSMatthew Knepley   } else {
8166d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
8176d3beeddSMatthew Knepley   }
8186d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
8196d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8206d3beeddSMatthew Knepley   PetscFunctionReturn(0);
8216d3beeddSMatthew Knepley }
8226d3beeddSMatthew Knepley 
8236d3beeddSMatthew Knepley #undef __FUNCT__
8246d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7"
8256d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
8266d3beeddSMatthew Knepley {
8276d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
8286d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7;
829dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
830dd6ea824SBarry Smith   const PetscScalar  *b;
8316d3beeddSMatthew Knepley   PetscErrorCode     ierr;
8326d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
8336d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
8346d3beeddSMatthew Knepley 
8356d3beeddSMatthew Knepley   PetscFunctionBegin;
8366d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
8376d3beeddSMatthew Knepley   its = its*lits;
8386d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
8396d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
8406d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
8416d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
8426d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
8436d3beeddSMatthew Knepley 
8446d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
8456d3beeddSMatthew Knepley 
8466d3beeddSMatthew Knepley   diag  = a->diag;
8476d3beeddSMatthew Knepley   idiag = a->idiag;
8486d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
8496d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8506d3beeddSMatthew Knepley 
8516d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
8526d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
8536d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[7]  + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42];
8546d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[8]  + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43];
8556d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[9]  + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44];
8566d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45];
8576d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46];
8586d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47];
8596d3beeddSMatthew Knepley       x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48];
8606d3beeddSMatthew Knepley       i2     = 7;
8616d3beeddSMatthew Knepley       idiag += 49;
8626d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
8636d3beeddSMatthew Knepley         v     = aa + 49*ai[i];
8646d3beeddSMatthew Knepley         vi    = aj + ai[i];
8656d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
8666d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6];
8676d3beeddSMatthew Knepley         while (nz--) {
8686d3beeddSMatthew Knepley           idx  = 7*(*vi++);
8696d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
8706d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
8716d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
8726d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
8736d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
8746d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
8756d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
8766d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
8776d3beeddSMatthew Knepley           v   += 49;
8786d3beeddSMatthew Knepley         }
8796d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
8806d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
8816d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
8826d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
8836d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
8846d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
8856d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
8866d3beeddSMatthew Knepley         idiag   += 49;
8876d3beeddSMatthew Knepley         i2      += 7;
8886d3beeddSMatthew Knepley       }
8896d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
890dc0b31edSSatish Balay       ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr);
8916d3beeddSMatthew Knepley     }
8926d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
8936d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
8946d3beeddSMatthew Knepley       i2    = 0;
8956d3beeddSMatthew Knepley       mdiag = a->idiag+49*a->mbs;
8966d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
8976d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8986d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[7]*x2  + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7;
8996d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2  + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7;
9006d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2  + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7;
9016d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7;
9026d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7;
9036d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7;
9046d3beeddSMatthew Knepley         x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7;
9056d3beeddSMatthew Knepley         mdiag  += 36;
9066d3beeddSMatthew Knepley         i2     += 6;
9076d3beeddSMatthew Knepley       }
908dc0b31edSSatish Balay       ierr = PetscLogFlops(93.0*m);CHKERRQ(ierr);
9096d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
910d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
9116d3beeddSMatthew Knepley     }
9126d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
9136d3beeddSMatthew Knepley       idiag   = a->idiag+49*a->mbs - 49;
9146d3beeddSMatthew Knepley       i2      = 7*m - 7;
9156d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
9166d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[7]*x2  + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7;
9176d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[8]*x2  + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7;
9186d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[9]*x2  + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7;
9196d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7;
9206d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7;
9216d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7;
9226d3beeddSMatthew Knepley       x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7;
9236d3beeddSMatthew Knepley       idiag -= 49;
9246d3beeddSMatthew Knepley       i2    -= 7;
9256d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
9266d3beeddSMatthew Knepley         v     = aa + 49*(diag[i]+1);
9276d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
9286d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
9296d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6];
9306d3beeddSMatthew Knepley         while (nz--) {
9316d3beeddSMatthew Knepley           idx  = 7*(*vi++);
9326d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
9336d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
9346d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
9356d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
9366d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
9376d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
9386d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
9396d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
9406d3beeddSMatthew Knepley           v   += 49;
9416d3beeddSMatthew Knepley         }
9426d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
9436d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
9446d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
9456d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
9466d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
9476d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
9486d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
9496d3beeddSMatthew Knepley         idiag   -= 49;
9506d3beeddSMatthew Knepley         i2      -= 7;
9516d3beeddSMatthew Knepley       }
952dc0b31edSSatish Balay       ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr);
9536d3beeddSMatthew Knepley     }
9546d3beeddSMatthew Knepley   } else {
9556d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
9566d3beeddSMatthew Knepley   }
9576d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
9586d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
9596d3beeddSMatthew Knepley   PetscFunctionReturn(0);
9606d3beeddSMatthew Knepley }
9616d3beeddSMatthew Knepley 
962af674e45SBarry Smith /*
96381824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
964af674e45SBarry Smith */
965af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
966af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
967af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
968af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
969af674e45SBarry Smith #endif
970af674e45SBarry Smith 
9719c8c1041SBarry Smith EXTERN_C_BEGIN
972af674e45SBarry Smith #undef __FUNCT__
973af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_"
974be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
975af674e45SBarry Smith {
976af674e45SBarry Smith   Mat               A = *AA;
977af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
978c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
979c1ac3661SBarry Smith   PetscInt          *ai=a->i,*ailen=a->ilen;
98017ec6a02SBarry Smith   PetscInt          *aj=a->j,stepval,lastcol = -1;
981f15d580aSBarry Smith   const PetscScalar *value = v;
9824bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
983af674e45SBarry Smith 
984af674e45SBarry Smith   PetscFunctionBegin;
985d0f46423SBarry Smith   if (A->rmap->bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
986af674e45SBarry Smith   stepval = (n-1)*4;
987af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
988af674e45SBarry Smith     row  = im[k];
989af674e45SBarry Smith     rp   = aj + ai[row];
990af674e45SBarry Smith     ap   = aa + 16*ai[row];
991af674e45SBarry Smith     nrow = ailen[row];
992af674e45SBarry Smith     low  = 0;
99317ec6a02SBarry Smith     high = nrow;
994af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
995af674e45SBarry Smith       col = in[l];
99617ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
99717ec6a02SBarry Smith       lastcol = col;
9981e3347e8SBarry Smith       value = v + k*(stepval+4 + l)*4;
999af674e45SBarry Smith       while (high-low > 7) {
1000af674e45SBarry Smith         t = (low+high)/2;
1001af674e45SBarry Smith         if (rp[t] > col) high = t;
1002af674e45SBarry Smith         else             low  = t;
1003af674e45SBarry Smith       }
1004af674e45SBarry Smith       for (i=low; i<high; i++) {
1005af674e45SBarry Smith         if (rp[i] > col) break;
1006af674e45SBarry Smith         if (rp[i] == col) {
1007af674e45SBarry Smith           bap  = ap +  16*i;
1008af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
1009af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
1010af674e45SBarry Smith               bap[jj] += *value++;
1011af674e45SBarry Smith             }
1012af674e45SBarry Smith           }
1013af674e45SBarry Smith           goto noinsert2;
1014af674e45SBarry Smith         }
1015af674e45SBarry Smith       }
1016af674e45SBarry Smith       N = nrow++ - 1;
101717ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
1018af674e45SBarry Smith       /* shift up all the later entries in this row */
1019af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1020af674e45SBarry Smith         rp[ii+1] = rp[ii];
1021a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1022af674e45SBarry Smith       }
1023af674e45SBarry Smith       if (N >= i) {
1024a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1025af674e45SBarry Smith       }
1026af674e45SBarry Smith       rp[i] = col;
1027af674e45SBarry Smith       bap   = ap +  16*i;
1028af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
1029af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
1030af674e45SBarry Smith           bap[jj] = *value++;
1031af674e45SBarry Smith         }
1032af674e45SBarry Smith       }
1033af674e45SBarry Smith       noinsert2:;
1034af674e45SBarry Smith       low = i;
1035af674e45SBarry Smith     }
1036af674e45SBarry Smith     ailen[row] = nrow;
1037af674e45SBarry Smith   }
1038be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1039af674e45SBarry Smith }
10409c8c1041SBarry Smith EXTERN_C_END
1041af674e45SBarry Smith 
1042af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1043af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
1044af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1045af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
1046af674e45SBarry Smith #endif
1047af674e45SBarry Smith 
10489c8c1041SBarry Smith EXTERN_C_BEGIN
1049af674e45SBarry Smith #undef __FUNCT__
1050af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_"
1051be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
1052af674e45SBarry Smith {
1053af674e45SBarry Smith   Mat         A = *AA;
1054af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1055c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm;
1056c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
1057c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
105817ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
1059af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
1060af674e45SBarry Smith 
1061af674e45SBarry Smith   PetscFunctionBegin;
1062af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1063af674e45SBarry Smith     row  = im[k]; brow = row/4;
1064af674e45SBarry Smith     rp   = aj + ai[brow];
1065af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1066af674e45SBarry Smith     nrow = ailen[brow];
1067af674e45SBarry Smith     low  = 0;
106817ec6a02SBarry Smith     high = nrow;
1069af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1070af674e45SBarry Smith       col = in[l]; bcol = col/4;
1071af674e45SBarry Smith       ridx = row % 4; cidx = col % 4;
1072af674e45SBarry Smith       value = v[l + k*n];
107317ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
107417ec6a02SBarry Smith       lastcol = col;
1075af674e45SBarry Smith       while (high-low > 7) {
1076af674e45SBarry Smith         t = (low+high)/2;
1077af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1078af674e45SBarry Smith         else              low  = t;
1079af674e45SBarry Smith       }
1080af674e45SBarry Smith       for (i=low; i<high; i++) {
1081af674e45SBarry Smith         if (rp[i] > bcol) break;
1082af674e45SBarry Smith         if (rp[i] == bcol) {
1083af674e45SBarry Smith           bap  = ap +  16*i + 4*cidx + ridx;
1084af674e45SBarry Smith           *bap += value;
1085af674e45SBarry Smith           goto noinsert1;
1086af674e45SBarry Smith         }
1087af674e45SBarry Smith       }
1088af674e45SBarry Smith       N = nrow++ - 1;
108917ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1090af674e45SBarry Smith       /* shift up all the later entries in this row */
1091af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1092af674e45SBarry Smith         rp[ii+1] = rp[ii];
1093a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1094af674e45SBarry Smith       }
1095af674e45SBarry Smith       if (N>=i) {
1096a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1097af674e45SBarry Smith       }
1098af674e45SBarry Smith       rp[i]                    = bcol;
1099af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1100af674e45SBarry Smith       noinsert1:;
1101af674e45SBarry Smith       low = i;
1102af674e45SBarry Smith     }
1103af674e45SBarry Smith     ailen[brow] = nrow;
1104af674e45SBarry Smith   }
1105be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1106af674e45SBarry Smith }
11079c8c1041SBarry Smith EXTERN_C_END
1108af674e45SBarry Smith 
1109be5855fcSBarry Smith /*
1110be5855fcSBarry Smith      Checks for missing diagonals
1111be5855fcSBarry Smith */
11124a2ae208SSatish Balay #undef __FUNCT__
11134a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ"
11142af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d)
1115be5855fcSBarry Smith {
1116be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11176849ba73SBarry Smith   PetscErrorCode ierr;
1118c1ac3661SBarry Smith   PetscInt       *diag,*jj = a->j,i;
1119be5855fcSBarry Smith 
1120be5855fcSBarry Smith   PetscFunctionBegin;
1121c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
11222af78befSBarry Smith   *missing = PETSC_FALSE;
11232efa7f71SHong Zhang   if (A->rmap->n > 0 && !jj) {
11242efa7f71SHong Zhang     *missing  = PETSC_TRUE;
11252efa7f71SHong Zhang     if (d) *d = 0;
11262efa7f71SHong Zhang     PetscInfo(A,"Matrix has no entries therefor is missing diagonal");
11272efa7f71SHong Zhang   } else {
1128883fce79SBarry Smith     diag     = a->diag;
11290e8e8aceSBarry Smith     for (i=0; i<a->mbs; i++) {
1130be5855fcSBarry Smith       if (jj[diag[i]] != i) {
11312af78befSBarry Smith         *missing  = PETSC_TRUE;
11322af78befSBarry Smith         if (d) *d = i;
11332efa7f71SHong Zhang         PetscInfo1(A,"Matrix is missing block diagonal number %D",i);
11342efa7f71SHong Zhang       }
1135be5855fcSBarry Smith     }
1136be5855fcSBarry Smith   }
1137be5855fcSBarry Smith   PetscFunctionReturn(0);
1138be5855fcSBarry Smith }
1139be5855fcSBarry Smith 
11404a2ae208SSatish Balay #undef __FUNCT__
11414a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ"
1142dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1143de6a44a3SBarry Smith {
1144de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11456849ba73SBarry Smith   PetscErrorCode ierr;
114609f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1147de6a44a3SBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
114909f38230SBarry Smith   if (!a->diag) {
115009f38230SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
115109f38230SBarry Smith   }
11527fc0212eSBarry Smith   for (i=0; i<m; i++) {
115309f38230SBarry Smith     a->diag[i] = a->i[i+1];
1154de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1155de6a44a3SBarry Smith       if (a->j[j] == i) {
115609f38230SBarry Smith         a->diag[i] = j;
1157de6a44a3SBarry Smith         break;
1158de6a44a3SBarry Smith       }
1159de6a44a3SBarry Smith     }
1160de6a44a3SBarry Smith   }
11613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1162de6a44a3SBarry Smith }
11632593348eSBarry Smith 
11642593348eSBarry Smith 
1165690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**);
11663b2fbd54SBarry Smith 
11674a2ae208SSatish Balay #undef __FUNCT__
11684a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ"
11698f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
11703b2fbd54SBarry Smith {
11713b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1172dfbe8321SBarry Smith   PetscErrorCode ierr;
1173d0f46423SBarry Smith   PetscInt       i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs,nbs = 1,k,l,cnt;
11748f7157efSSatish Balay   PetscInt       *tia, *tja;
11753b2fbd54SBarry Smith 
11763a40ed3dSBarry Smith   PetscFunctionBegin;
11773b2fbd54SBarry Smith   *nn = n;
11783a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
11793b2fbd54SBarry Smith   if (symmetric) {
11808f7157efSSatish Balay     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr);
11813b2fbd54SBarry Smith   } else {
11828f7157efSSatish Balay     tia = a->i; tja = a->j;
11833b2fbd54SBarry Smith   }
11843b2fbd54SBarry Smith 
1185ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1186ecc77c7aSBarry Smith     (*nn) *= bs;
1187ecc77c7aSBarry Smith     nbs    = bs;
11888f7157efSSatish Balay     /* malloc & create the natural set of indices */
1189ecc77c7aSBarry Smith     ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr);
11909985e31cSBarry Smith     if (n) {
1191ecc77c7aSBarry Smith       (*ia)[0] = 0;
1192ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1193ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1194ecc77c7aSBarry Smith       }
11959985e31cSBarry Smith     }
1196ecc77c7aSBarry Smith 
1197ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1198ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1199ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1200ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
12018f7157efSSatish Balay       }
12028f7157efSSatish Balay     }
12039985e31cSBarry Smith     if (n) {
1204ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
12059985e31cSBarry Smith     }
1206ecc77c7aSBarry Smith 
12079985e31cSBarry Smith     if (ja) {
12089985e31cSBarry Smith       ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr);
12099985e31cSBarry Smith       cnt = 0;
12109985e31cSBarry Smith       for (i=0; i<n; i++) {
12119985e31cSBarry Smith         for (j=0; j<bs; j++) {
12129985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
12139985e31cSBarry Smith             for (l=0; l<bs; l++) {
12149985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
12159985e31cSBarry Smith 	    }
12169985e31cSBarry Smith           }
12179985e31cSBarry Smith         }
12189985e31cSBarry Smith       }
12199985e31cSBarry Smith     }
12209985e31cSBarry Smith 
1221ecc77c7aSBarry Smith     n     *= bs;
1222ecc77c7aSBarry Smith     nz *= bs*bs;
12238f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
12248f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
12258f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
12268f7157efSSatish Balay     }
1227f6d58c54SBarry Smith   } else if (oshift == 1) {
1228*715a17b5SBarry Smith     if (symmetric) {
1229*715a17b5SBarry Smith       PetscInt nz = tia[A->rmap->n/bs];
1230*715a17b5SBarry Smith       /*  add 1 to i and j indices */
1231*715a17b5SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1;
1232*715a17b5SBarry Smith       *ia = tia;
1233*715a17b5SBarry Smith       if (ja) {
1234*715a17b5SBarry Smith 	for (i=0; i<nz; i++) tja[i] = tja[i] + 1;
1235*715a17b5SBarry Smith         *ja = tja;
1236*715a17b5SBarry Smith       }
1237*715a17b5SBarry Smith     } else {
1238f6d58c54SBarry Smith       PetscInt nz = a->i[A->rmap->n/bs];
1239f6d58c54SBarry Smith       /* malloc space and  add 1 to i and j indices */
1240f6d58c54SBarry Smith       ierr = PetscMalloc((A->rmap->n/bs+1)*sizeof(PetscInt),ia);CHKERRQ(ierr);
1241f6d58c54SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1;
1242f6d58c54SBarry Smith       if (ja) {
1243f6d58c54SBarry Smith 	ierr = PetscMalloc(nz*sizeof(PetscInt),ja);CHKERRQ(ierr);
1244f6d58c54SBarry Smith 	for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1;
1245f6d58c54SBarry Smith       }
1246*715a17b5SBarry Smith     }
12478f7157efSSatish Balay   } else {
12488f7157efSSatish Balay     *ia = tia;
1249ecc77c7aSBarry Smith     if (ja) *ja = tja;
12508f7157efSSatish Balay   }
1251f6d58c54SBarry Smith 
12523a40ed3dSBarry Smith   PetscFunctionReturn(0);
12533b2fbd54SBarry Smith }
12543b2fbd54SBarry Smith 
12554a2ae208SSatish Balay #undef __FUNCT__
12564a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ"
12578f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
12583b2fbd54SBarry Smith {
12596849ba73SBarry Smith   PetscErrorCode ierr;
12603b2fbd54SBarry Smith 
12613a40ed3dSBarry Smith   PetscFunctionBegin;
12623a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1263*715a17b5SBarry Smith   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
1264606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
12659985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12663b2fbd54SBarry Smith   }
12673a40ed3dSBarry Smith   PetscFunctionReturn(0);
12683b2fbd54SBarry Smith }
12693b2fbd54SBarry Smith 
12704a2ae208SSatish Balay #undef __FUNCT__
12714a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ"
1272dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
12732d61bbb3SSatish Balay {
12742d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1275dfbe8321SBarry Smith   PetscErrorCode ierr;
12762d61bbb3SSatish Balay 
1277433994e6SBarry Smith   PetscFunctionBegin;
1278aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1279d0f46423SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz);
12802d61bbb3SSatish Balay #endif
1281e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
1282c38d4ed2SBarry Smith   if (a->row) {
1283c38d4ed2SBarry Smith     ierr = ISDestroy(a->row);CHKERRQ(ierr);
1284c38d4ed2SBarry Smith   }
1285c38d4ed2SBarry Smith   if (a->col) {
1286c38d4ed2SBarry Smith     ierr = ISDestroy(a->col);CHKERRQ(ierr);
1287c38d4ed2SBarry Smith   }
128805b42c5fSBarry Smith   ierr = PetscFree(a->diag);CHKERRQ(ierr);
128905b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
129005b42c5fSBarry Smith   ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);
129105b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
129205b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1293e51c0b9cSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
129405b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
129505b42c5fSBarry Smith   ierr = PetscFree(a->xtoy);CHKERRQ(ierr);
129673e7a558SHong Zhang   if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);}
1297c4319e64SHong Zhang 
129870e08fbdSBarry Smith   if (a->sbaijMat) {ierr = MatDestroy(a->sbaijMat);CHKERRQ(ierr);}
1299606d414cSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
1300901853e0SKris Buschelman 
1301dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
130243516a2dSKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr);
1303901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1304901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1305901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
1306901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
1307901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr);
1308901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1309725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
13102d61bbb3SSatish Balay   PetscFunctionReturn(0);
13112d61bbb3SSatish Balay }
13122d61bbb3SSatish Balay 
13134a2ae208SSatish Balay #undef __FUNCT__
13144a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ"
13154e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg)
13162d61bbb3SSatish Balay {
13172d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
131863ba0a88SBarry Smith   PetscErrorCode ierr;
13192d61bbb3SSatish Balay 
13202d61bbb3SSatish Balay   PetscFunctionBegin;
1321aa275fccSKris Buschelman   switch (op) {
1322aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
13234e0d8c25SBarry Smith     a->roworiented    = flg;
1324aa275fccSKris Buschelman     break;
1325a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1326a9817697SBarry Smith     a->keepnonzeropattern = flg;
1327aa275fccSKris Buschelman     break;
1328512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1329512a5fc5SBarry Smith     a->nonew          = (flg ? 0 : 1);
1330aa275fccSKris Buschelman     break;
1331aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
13324e0d8c25SBarry Smith     a->nonew          = (flg ? -1 : 0);
1333aa275fccSKris Buschelman     break;
1334aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
13354e0d8c25SBarry Smith     a->nonew          = (flg ? -2 : 0);
1336aa275fccSKris Buschelman     break;
133728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
133828b2fa4aSMatthew Knepley     a->nounused       = (flg ? -1 : 0);
133928b2fa4aSMatthew Knepley     break;
13404e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1341aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1342aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1343290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1344aa275fccSKris Buschelman     break;
134577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
134677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13479a4540c5SBarry Smith   case MAT_HERMITIAN:
13489a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1349290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
135077e54ba9SKris Buschelman     break;
1351aa275fccSKris Buschelman   default:
1352ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
13532d61bbb3SSatish Balay   }
13542d61bbb3SSatish Balay   PetscFunctionReturn(0);
13552d61bbb3SSatish Balay }
13562d61bbb3SSatish Balay 
13574a2ae208SSatish Balay #undef __FUNCT__
13584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ"
1359c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13602d61bbb3SSatish Balay {
13612d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
13626849ba73SBarry Smith   PetscErrorCode ierr;
1363c1ac3661SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
13643f1db9ecSBarry Smith   MatScalar      *aa,*aa_i;
136587828ca2SBarry Smith   PetscScalar    *v_i;
13662d61bbb3SSatish Balay 
13672d61bbb3SSatish Balay   PetscFunctionBegin;
1368d0f46423SBarry Smith   bs  = A->rmap->bs;
13692d61bbb3SSatish Balay   ai  = a->i;
13702d61bbb3SSatish Balay   aj  = a->j;
13712d61bbb3SSatish Balay   aa  = a->a;
13722d61bbb3SSatish Balay   bs2 = a->bs2;
13732d61bbb3SSatish Balay 
1374d0f46423SBarry Smith   if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
13752d61bbb3SSatish Balay 
13762d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
13772d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
13782d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
13792d61bbb3SSatish Balay   *nz = bs*M;
13802d61bbb3SSatish Balay 
13812d61bbb3SSatish Balay   if (v) {
13822d61bbb3SSatish Balay     *v = 0;
13832d61bbb3SSatish Balay     if (*nz) {
138487828ca2SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr);
13852d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13862d61bbb3SSatish Balay         v_i  = *v + i*bs;
13872d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
13882d61bbb3SSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
13892d61bbb3SSatish Balay       }
13902d61bbb3SSatish Balay     }
13912d61bbb3SSatish Balay   }
13922d61bbb3SSatish Balay 
13932d61bbb3SSatish Balay   if (idx) {
13942d61bbb3SSatish Balay     *idx = 0;
13952d61bbb3SSatish Balay     if (*nz) {
1396c1ac3661SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr);
13972d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13982d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13992d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
14002d61bbb3SSatish Balay         for (j=0; j<bs; j++) {idx_i[j] = itmp++;}
14012d61bbb3SSatish Balay       }
14022d61bbb3SSatish Balay     }
14032d61bbb3SSatish Balay   }
14042d61bbb3SSatish Balay   PetscFunctionReturn(0);
14052d61bbb3SSatish Balay }
14062d61bbb3SSatish Balay 
14074a2ae208SSatish Balay #undef __FUNCT__
14084a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ"
1409c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
14102d61bbb3SSatish Balay {
1411dfbe8321SBarry Smith   PetscErrorCode ierr;
1412606d414cSSatish Balay 
14132d61bbb3SSatish Balay   PetscFunctionBegin;
141405b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
141505b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
14162d61bbb3SSatish Balay   PetscFunctionReturn(0);
14172d61bbb3SSatish Balay }
14182d61bbb3SSatish Balay 
14194a2ae208SSatish Balay #undef __FUNCT__
14204a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ"
1421fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
14222d61bbb3SSatish Balay {
14232d61bbb3SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data;
14242d61bbb3SSatish Balay   Mat            C;
14256849ba73SBarry Smith   PetscErrorCode ierr;
1426d0f46423SBarry Smith   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
1427c1ac3661SBarry Smith   PetscInt       *rows,*cols,bs2=a->bs2;
1428dd6ea824SBarry Smith   MatScalar      *array;
14292d61bbb3SSatish Balay 
14302d61bbb3SSatish Balay   PetscFunctionBegin;
1431e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1432fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *B) {
1433c1ac3661SBarry Smith     ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr);
1434c1ac3661SBarry Smith     ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr);
14352d61bbb3SSatish Balay 
14362d61bbb3SSatish Balay     for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1;
14377adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr);
1438d0f46423SBarry Smith     ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr);
14397adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
1440ab93d7beSBarry Smith     ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr);
1441606d414cSSatish Balay     ierr = PetscFree(col);CHKERRQ(ierr);
1442fc4dec0aSBarry Smith   } else {
1443fc4dec0aSBarry Smith     C = *B;
1444fc4dec0aSBarry Smith   }
1445fc4dec0aSBarry Smith 
1446fc4dec0aSBarry Smith   array = a->a;
1447c1ac3661SBarry Smith   ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr);
14482d61bbb3SSatish Balay   cols = rows + bs;
14492d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
14502d61bbb3SSatish Balay     cols[0] = i*bs;
14512d61bbb3SSatish Balay     for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1;
14522d61bbb3SSatish Balay     len = ai[i+1] - ai[i];
14532d61bbb3SSatish Balay     for (j=0; j<len; j++) {
14542d61bbb3SSatish Balay       rows[0] = (*aj++)*bs;
14552d61bbb3SSatish Balay       for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1;
14562d61bbb3SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr);
14572d61bbb3SSatish Balay       array += bs2;
14582d61bbb3SSatish Balay     }
14592d61bbb3SSatish Balay   }
1460606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
14612d61bbb3SSatish Balay 
14622d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14632d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14642d61bbb3SSatish Balay 
1465815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
14662d61bbb3SSatish Balay     *B = C;
14672d61bbb3SSatish Balay   } else {
1468273d9f13SBarry Smith     ierr = MatHeaderCopy(A,C);CHKERRQ(ierr);
14692d61bbb3SSatish Balay   }
14702d61bbb3SSatish Balay   PetscFunctionReturn(0);
14712d61bbb3SSatish Balay }
14722d61bbb3SSatish Balay 
14734a2ae208SSatish Balay #undef __FUNCT__
14744a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary"
14756849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
14762593348eSBarry Smith {
1477b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14786849ba73SBarry Smith   PetscErrorCode ierr;
1479d0f46423SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2;
1480b24ad042SBarry Smith   int            fd;
148187828ca2SBarry Smith   PetscScalar    *aa;
1482ce6f0cecSBarry Smith   FILE           *file;
14832593348eSBarry Smith 
14843a40ed3dSBarry Smith   PetscFunctionBegin;
1485b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1486d0f46423SBarry Smith   ierr        = PetscMalloc((4+A->rmap->N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
1487552e946dSBarry Smith   col_lens[0] = MAT_FILE_COOKIE;
14883b2fbd54SBarry Smith 
1489d0f46423SBarry Smith   col_lens[1] = A->rmap->N;
1490d0f46423SBarry Smith   col_lens[2] = A->cmap->n;
14917e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
14922593348eSBarry Smith 
14932593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1494b6490206SBarry Smith   count = 0;
1495b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1496b6490206SBarry Smith     for (j=0; j<bs; j++) {
1497b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1498b6490206SBarry Smith     }
14992593348eSBarry Smith   }
1500d0f46423SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1501606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
15022593348eSBarry Smith 
15032593348eSBarry Smith   /* store column indices (zero start index) */
1504c1ac3661SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr);
1505b6490206SBarry Smith   count = 0;
1506b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1507b6490206SBarry Smith     for (j=0; j<bs; j++) {
1508b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1509b6490206SBarry Smith         for (l=0; l<bs; l++) {
1510b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
15112593348eSBarry Smith         }
15122593348eSBarry Smith       }
1513b6490206SBarry Smith     }
1514b6490206SBarry Smith   }
15156f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1516606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
15172593348eSBarry Smith 
15182593348eSBarry Smith   /* store nonzero values */
151987828ca2SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
1520b6490206SBarry Smith   count = 0;
1521b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1522b6490206SBarry Smith     for (j=0; j<bs; j++) {
1523b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1524b6490206SBarry Smith         for (l=0; l<bs; l++) {
15257e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1526b6490206SBarry Smith         }
1527b6490206SBarry Smith       }
1528b6490206SBarry Smith     }
1529b6490206SBarry Smith   }
15306f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1531606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1532ce6f0cecSBarry Smith 
1533b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1534ce6f0cecSBarry Smith   if (file) {
1535d0f46423SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs);
1536ce6f0cecSBarry Smith   }
15373a40ed3dSBarry Smith   PetscFunctionReturn(0);
15382593348eSBarry Smith }
15392593348eSBarry Smith 
15404a2ae208SSatish Balay #undef __FUNCT__
15414a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII"
15426849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
15432593348eSBarry Smith {
1544b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1545dfbe8321SBarry Smith   PetscErrorCode    ierr;
1546d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
1547f3ef73ceSBarry Smith   PetscViewerFormat format;
15482593348eSBarry Smith 
15493a40ed3dSBarry Smith   PetscFunctionBegin;
1550b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1551456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
155277431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1553fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1554bcd9e38bSBarry Smith     Mat aij;
1555ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1556bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
1557bcd9e38bSBarry Smith     ierr = MatDestroy(aij);CHKERRQ(ierr);
155804929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
155904929863SHong Zhang      PetscFunctionReturn(0);
1560fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1561b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
156244cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
156344cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
156477431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
156544cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
156644cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1567aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15680e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1569a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l,
15700e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15710e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1572a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l,
15730e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15740e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1575a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15760ef38995SBarry Smith             }
157744cd7ae7SLois Curfman McInnes #else
15780ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
1579a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
15800ef38995SBarry Smith             }
158144cd7ae7SLois Curfman McInnes #endif
158244cd7ae7SLois Curfman McInnes           }
158344cd7ae7SLois Curfman McInnes         }
1584b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
158544cd7ae7SLois Curfman McInnes       }
158644cd7ae7SLois Curfman McInnes     }
1587b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
15880ef38995SBarry Smith   } else {
1589b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
1590b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1591b6490206SBarry Smith       for (j=0; j<bs; j++) {
159277431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1593b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1594b6490206SBarry Smith           for (l=0; l<bs; l++) {
1595aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15960e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
1597a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
15980e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15990e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
1600a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
16010e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
16020ef38995SBarry Smith             } else {
1603a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
160488685aaeSLois Curfman McInnes             }
160588685aaeSLois Curfman McInnes #else
1606a83599f4SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
160788685aaeSLois Curfman McInnes #endif
16082593348eSBarry Smith           }
16092593348eSBarry Smith         }
1610b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
16112593348eSBarry Smith       }
16122593348eSBarry Smith     }
1613b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
1614b6490206SBarry Smith   }
1615b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
16163a40ed3dSBarry Smith   PetscFunctionReturn(0);
16172593348eSBarry Smith }
16182593348eSBarry Smith 
16194a2ae208SSatish Balay #undef __FUNCT__
16204a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom"
16216849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
16223270192aSSatish Balay {
162377ed5343SBarry Smith   Mat            A = (Mat) Aa;
16243270192aSSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data;
16256849ba73SBarry Smith   PetscErrorCode ierr;
1626d0f46423SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
16270e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
16283f1db9ecSBarry Smith   MatScalar      *aa;
1629b0a32e0cSBarry Smith   PetscViewer    viewer;
16303270192aSSatish Balay 
16313a40ed3dSBarry Smith   PetscFunctionBegin;
16323270192aSSatish Balay 
1633b65db4caSBarry Smith   /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/
163477ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
163577ed5343SBarry Smith 
1636b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
163777ed5343SBarry Smith 
16383270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1639b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
16403270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16413270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1642d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16433270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16443270192aSSatish Balay       aa = a->a + j*bs2;
16453270192aSSatish Balay       for (k=0; k<bs; k++) {
16463270192aSSatish Balay         for (l=0; l<bs; l++) {
16470e6d2581SBarry Smith           if (PetscRealPart(*aa++) >=  0.) continue;
1648b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16493270192aSSatish Balay         }
16503270192aSSatish Balay       }
16513270192aSSatish Balay     }
16523270192aSSatish Balay   }
1653b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
16543270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16553270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1656d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16573270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16583270192aSSatish Balay       aa = a->a + j*bs2;
16593270192aSSatish Balay       for (k=0; k<bs; k++) {
16603270192aSSatish Balay         for (l=0; l<bs; l++) {
16610e6d2581SBarry Smith           if (PetscRealPart(*aa++) != 0.) continue;
1662b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16633270192aSSatish Balay         }
16643270192aSSatish Balay       }
16653270192aSSatish Balay     }
16663270192aSSatish Balay   }
16673270192aSSatish Balay 
1668b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
16693270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16703270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1671d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16723270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16733270192aSSatish Balay       aa = a->a + j*bs2;
16743270192aSSatish Balay       for (k=0; k<bs; k++) {
16753270192aSSatish Balay         for (l=0; l<bs; l++) {
16760e6d2581SBarry Smith           if (PetscRealPart(*aa++) <= 0.) continue;
1677b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16783270192aSSatish Balay         }
16793270192aSSatish Balay       }
16803270192aSSatish Balay     }
16813270192aSSatish Balay   }
168277ed5343SBarry Smith   PetscFunctionReturn(0);
168377ed5343SBarry Smith }
16843270192aSSatish Balay 
16854a2ae208SSatish Balay #undef __FUNCT__
16864a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw"
16876849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
168877ed5343SBarry Smith {
1689dfbe8321SBarry Smith   PetscErrorCode ierr;
16900e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1691b0a32e0cSBarry Smith   PetscDraw      draw;
169277ed5343SBarry Smith   PetscTruth     isnull;
16933270192aSSatish Balay 
169477ed5343SBarry Smith   PetscFunctionBegin;
169577ed5343SBarry Smith 
1696b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1697b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
169877ed5343SBarry Smith 
169977ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1700d0f46423SBarry Smith   xr  = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
170177ed5343SBarry Smith   xr += w;    yr += h;  xl = -w;     yl = -h;
1702b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1703b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
170477ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
17053a40ed3dSBarry Smith   PetscFunctionReturn(0);
17063270192aSSatish Balay }
17073270192aSSatish Balay 
17084a2ae208SSatish Balay #undef __FUNCT__
17094a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ"
1710dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
17112593348eSBarry Smith {
1712dfbe8321SBarry Smith   PetscErrorCode ierr;
171332077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw;
17142593348eSBarry Smith 
17153a40ed3dSBarry Smith   PetscFunctionBegin;
171632077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1717fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1718fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
171932077d6dSBarry Smith   if (iascii){
17203a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
17210f5bd95cSBarry Smith   } else if (isbinary) {
17223a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
17230f5bd95cSBarry Smith   } else if (isdraw) {
17243a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
17255cd90555SBarry Smith   } else {
1726a5e6ed63SBarry Smith     Mat B;
1727ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1728a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
1729a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
17302593348eSBarry Smith   }
17313a40ed3dSBarry Smith   PetscFunctionReturn(0);
17322593348eSBarry Smith }
1733b6490206SBarry Smith 
1734cd0e1443SSatish Balay 
17354a2ae208SSatish Balay #undef __FUNCT__
17364a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ"
1737c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1738cd0e1443SSatish Balay {
1739cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1740c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1741c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1742d0f46423SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
174397e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1744cd0e1443SSatish Balay 
17453a40ed3dSBarry Smith   PetscFunctionBegin;
17462d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1747cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
174897e567efSBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1749d0f46423SBarry Smith     if (row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
17502d61bbb3SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
17512c3acbe9SBarry Smith     nrow = ailen[brow];
17522d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
175397e567efSBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1754d0f46423SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
17552d61bbb3SSatish Balay       col  = in[l] ;
17562d61bbb3SSatish Balay       bcol = col/bs;
17572d61bbb3SSatish Balay       cidx = col%bs;
17582d61bbb3SSatish Balay       ridx = row%bs;
17592d61bbb3SSatish Balay       high = nrow;
17602d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17612d61bbb3SSatish Balay       while (high-low > 5) {
1762cd0e1443SSatish Balay         t = (low+high)/2;
1763cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1764cd0e1443SSatish Balay         else             low  = t;
1765cd0e1443SSatish Balay       }
1766cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1767cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1768cd0e1443SSatish Balay         if (rp[i] == bcol) {
17692d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17702d61bbb3SSatish Balay           goto finished;
1771cd0e1443SSatish Balay         }
1772cd0e1443SSatish Balay       }
177397e567efSBarry Smith       *v++ = 0.0;
17742d61bbb3SSatish Balay       finished:;
1775cd0e1443SSatish Balay     }
1776cd0e1443SSatish Balay   }
17773a40ed3dSBarry Smith   PetscFunctionReturn(0);
1778cd0e1443SSatish Balay }
1779cd0e1443SSatish Balay 
178097e5c40aSBarry Smith #define CHUNKSIZE 10
17814a2ae208SSatish Balay #undef __FUNCT__
17824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ"
1783dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
178492c4ed94SBarry Smith {
178592c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1786e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1787c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
17886849ba73SBarry Smith   PetscErrorCode    ierr;
1789d0f46423SBarry Smith   PetscInt          *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
1790273d9f13SBarry Smith   PetscTruth        roworiented=a->roworiented;
1791dd6ea824SBarry Smith   const PetscScalar *value = v;
1792f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
179392c4ed94SBarry Smith 
17943a40ed3dSBarry Smith   PetscFunctionBegin;
17950e324ae4SSatish Balay   if (roworiented) {
17960e324ae4SSatish Balay     stepval = (n-1)*bs;
17970e324ae4SSatish Balay   } else {
17980e324ae4SSatish Balay     stepval = (m-1)*bs;
17990e324ae4SSatish Balay   }
180092c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
180192c4ed94SBarry Smith     row  = im[k];
18025ef9f2a5SBarry Smith     if (row < 0) continue;
18032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
180477431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
180592c4ed94SBarry Smith #endif
180692c4ed94SBarry Smith     rp   = aj + ai[row];
180792c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
180892c4ed94SBarry Smith     rmax = imax[row];
180992c4ed94SBarry Smith     nrow = ailen[row];
181092c4ed94SBarry Smith     low  = 0;
1811c71e6ed7SBarry Smith     high = nrow;
181292c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
18135ef9f2a5SBarry Smith       if (in[l] < 0) continue;
18142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
181577431f27SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1);
181692c4ed94SBarry Smith #endif
181792c4ed94SBarry Smith       col = in[l];
181892c4ed94SBarry Smith       if (roworiented) {
18190e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
18200e324ae4SSatish Balay       } else {
18210e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
182292c4ed94SBarry Smith       }
18237cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
1824e2ee6c50SBarry Smith       lastcol = col;
182592c4ed94SBarry Smith       while (high-low > 7) {
182692c4ed94SBarry Smith         t = (low+high)/2;
182792c4ed94SBarry Smith         if (rp[t] > col) high = t;
182892c4ed94SBarry Smith         else             low  = t;
182992c4ed94SBarry Smith       }
183092c4ed94SBarry Smith       for (i=low; i<high; i++) {
183192c4ed94SBarry Smith         if (rp[i] > col) break;
183292c4ed94SBarry Smith         if (rp[i] == col) {
18338a84c255SSatish Balay           bap  = ap +  bs2*i;
18340e324ae4SSatish Balay           if (roworiented) {
18358a84c255SSatish Balay             if (is == ADD_VALUES) {
1836dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1837dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18388a84c255SSatish Balay                   bap[jj] += *value++;
1839dd9472c6SBarry Smith                 }
1840dd9472c6SBarry Smith               }
18410e324ae4SSatish Balay             } else {
1842dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1843dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18440e324ae4SSatish Balay                   bap[jj] = *value++;
18458a84c255SSatish Balay                 }
1846dd9472c6SBarry Smith               }
1847dd9472c6SBarry Smith             }
18480e324ae4SSatish Balay           } else {
18490e324ae4SSatish Balay             if (is == ADD_VALUES) {
1850dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1851dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18520e324ae4SSatish Balay                   *bap++ += *value++;
1853dd9472c6SBarry Smith                 }
1854dd9472c6SBarry Smith               }
18550e324ae4SSatish Balay             } else {
1856dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1857dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18580e324ae4SSatish Balay                   *bap++  = *value++;
18590e324ae4SSatish Balay                 }
18608a84c255SSatish Balay               }
1861dd9472c6SBarry Smith             }
1862dd9472c6SBarry Smith           }
1863f1241b54SBarry Smith           goto noinsert2;
186492c4ed94SBarry Smith         }
186592c4ed94SBarry Smith       }
186689280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
1867085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1868421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
1869c03d1d03SSatish Balay       N = nrow++ - 1; high++;
187092c4ed94SBarry Smith       /* shift up all the later entries in this row */
187192c4ed94SBarry Smith       for (ii=N; ii>=i; ii--) {
187292c4ed94SBarry Smith         rp[ii+1] = rp[ii];
1873549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
187492c4ed94SBarry Smith       }
1875549d3d68SSatish Balay       if (N >= i) {
1876549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1877549d3d68SSatish Balay       }
187892c4ed94SBarry Smith       rp[i] = col;
18798a84c255SSatish Balay       bap   = ap +  bs2*i;
18800e324ae4SSatish Balay       if (roworiented) {
1881dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1882dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs) {
18830e324ae4SSatish Balay             bap[jj] = *value++;
1884dd9472c6SBarry Smith           }
1885dd9472c6SBarry Smith         }
18860e324ae4SSatish Balay       } else {
1887dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1888dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++) {
18890e324ae4SSatish Balay             *bap++  = *value++;
18900e324ae4SSatish Balay           }
1891dd9472c6SBarry Smith         }
1892dd9472c6SBarry Smith       }
1893f1241b54SBarry Smith       noinsert2:;
189492c4ed94SBarry Smith       low = i;
189592c4ed94SBarry Smith     }
189692c4ed94SBarry Smith     ailen[row] = nrow;
189792c4ed94SBarry Smith   }
18983a40ed3dSBarry Smith   PetscFunctionReturn(0);
189992c4ed94SBarry Smith }
190026e093fcSHong Zhang 
19014a2ae208SSatish Balay #undef __FUNCT__
19024a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ"
1903dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1904584200bdSSatish Balay {
1905584200bdSSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1906c1ac3661SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
1907d0f46423SBarry Smith   PetscInt       m = A->rmap->N,*ip,N,*ailen = a->ilen;
19086849ba73SBarry Smith   PetscErrorCode ierr;
1909c1ac3661SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
19103f1db9ecSBarry Smith   MatScalar      *aa = a->a,*ap;
19113447b6efSHong Zhang   PetscReal      ratio=0.6;
1912584200bdSSatish Balay 
19133a40ed3dSBarry Smith   PetscFunctionBegin;
19143a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1915584200bdSSatish Balay 
191643ee02c3SBarry Smith   if (m) rmax = ailen[0];
1917584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1918584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1919584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1920d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
1921584200bdSSatish Balay     if (fshift) {
1922a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
1923584200bdSSatish Balay       N = ailen[i];
1924584200bdSSatish Balay       for (j=0; j<N; j++) {
1925584200bdSSatish Balay         ip[j-fshift] = ip[j];
1926549d3d68SSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1927584200bdSSatish Balay       }
1928584200bdSSatish Balay     }
1929584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1930584200bdSSatish Balay   }
1931584200bdSSatish Balay   if (mbs) {
1932584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1933584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1934584200bdSSatish Balay   }
1935584200bdSSatish Balay   /* reset ilen and imax for each row */
1936584200bdSSatish Balay   for (i=0; i<mbs; i++) {
1937584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
1938584200bdSSatish Balay   }
1939a7c10996SSatish Balay   a->nz = ai[mbs];
1940584200bdSSatish Balay 
1941584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1942b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1943584200bdSSatish Balay   if (fshift && a->diag) {
1944606d414cSSatish Balay     ierr = PetscFree(a->diag);CHKERRQ(ierr);
194552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1946584200bdSSatish Balay     a->diag = 0;
1947584200bdSSatish Balay   }
194828b2fa4aSMatthew Knepley   if (fshift && a->nounused == -1) {
194928b2fa4aSMatthew Knepley     SETERRQ4(PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);
195028b2fa4aSMatthew Knepley   }
1951d0f46423SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
1952ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
1953ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
1954e2f3b5e9SSatish Balay   a->reallocs          = 0;
19550e6d2581SBarry Smith   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
1956cf4441caSHong Zhang 
1957cb5d8e9eSHong Zhang   /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */
19582f53aa61SHong Zhang   if (a->compressedrow.use){
1959317fbc4cSHong Zhang     ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
196073e7a558SHong Zhang   }
196188e51ccdSHong Zhang 
196288e51ccdSHong Zhang   A->same_nonzero = PETSC_TRUE;
19633a40ed3dSBarry Smith   PetscFunctionReturn(0);
1964584200bdSSatish Balay }
1965584200bdSSatish Balay 
1966bea157c4SSatish Balay /*
1967bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1968bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1969bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
1970bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
1971bea157c4SSatish Balay */
19724a2ae208SSatish Balay #undef __FUNCT__
19734a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks"
1974c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
1975d9b7c43dSSatish Balay {
1976c1ac3661SBarry Smith   PetscInt   i,j,k,row;
1977bea157c4SSatish Balay   PetscTruth flg;
19783a40ed3dSBarry Smith 
1979433994e6SBarry Smith   PetscFunctionBegin;
1980bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
1981bea157c4SSatish Balay     row = idx[i];
1982bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
1983bea157c4SSatish Balay       sizes[j] = 1;
1984bea157c4SSatish Balay       i++;
1985e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
1986bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
1987bea157c4SSatish Balay       i++;
1988bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
1989bea157c4SSatish Balay       flg = PETSC_TRUE;
1990bea157c4SSatish Balay       for (k=1; k<bs; k++) {
1991bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
1992bea157c4SSatish Balay           flg = PETSC_FALSE;
1993bea157c4SSatish Balay           break;
1994d9b7c43dSSatish Balay         }
1995bea157c4SSatish Balay       }
1996abc0a331SBarry Smith       if (flg) { /* No break in the bs */
1997bea157c4SSatish Balay         sizes[j] = bs;
1998bea157c4SSatish Balay         i+= bs;
1999bea157c4SSatish Balay       } else {
2000bea157c4SSatish Balay         sizes[j] = 1;
2001bea157c4SSatish Balay         i++;
2002bea157c4SSatish Balay       }
2003bea157c4SSatish Balay     }
2004bea157c4SSatish Balay   }
2005bea157c4SSatish Balay   *bs_max = j;
20063a40ed3dSBarry Smith   PetscFunctionReturn(0);
2007d9b7c43dSSatish Balay }
2008d9b7c43dSSatish Balay 
20094a2ae208SSatish Balay #undef __FUNCT__
20104a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ"
2011f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag)
2012d9b7c43dSSatish Balay {
2013d9b7c43dSSatish Balay   Mat_SeqBAIJ    *baij=(Mat_SeqBAIJ*)A->data;
2014dfbe8321SBarry Smith   PetscErrorCode ierr;
2015f4df32b1SMatthew Knepley   PetscInt       i,j,k,count,*rows;
2016d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max;
201787828ca2SBarry Smith   PetscScalar    zero = 0.0;
20183f1db9ecSBarry Smith   MatScalar      *aa;
2019d9b7c43dSSatish Balay 
20203a40ed3dSBarry Smith   PetscFunctionBegin;
2021d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2022bea157c4SSatish Balay   /* allocate memory for rows,sizes */
2023c1ac3661SBarry Smith   ierr  = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr);
2024bea157c4SSatish Balay   sizes = rows + is_n;
2025bea157c4SSatish Balay 
2026563b5814SBarry Smith   /* copy IS values to rows, and sort them */
2027bea157c4SSatish Balay   for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; }
2028bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
2029a9817697SBarry Smith   if (baij->keepnonzeropattern) {
2030dffd3267SBarry Smith     for (i=0; i<is_n; i++) { sizes[i] = 1; }
2031dffd3267SBarry Smith     bs_max = is_n;
203288e51ccdSHong Zhang     A->same_nonzero = PETSC_TRUE;
2033dffd3267SBarry Smith   } else {
2034bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
203588e51ccdSHong Zhang     A->same_nonzero = PETSC_FALSE;
2036dffd3267SBarry Smith   }
2037bea157c4SSatish Balay 
2038bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
2039bea157c4SSatish Balay     row   = rows[j];
2040d0f46423SBarry Smith     if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
2041bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2042b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2043a9817697SBarry Smith     if (sizes[i] == bs && !baij->keepnonzeropattern) {
2044f4df32b1SMatthew Knepley       if (diag != 0.0) {
2045bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2046bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2047bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
2048bea157c4SSatish Balay           ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr);
2049a07cd24cSSatish Balay         }
2050563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2051bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2052f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2053bea157c4SSatish Balay         }
2054f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2055bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2056f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2057bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2058aa482453SBarry Smith #if defined (PETSC_USE_DEBUG)
2059634064b4SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2060bea157c4SSatish Balay #endif
2061bea157c4SSatish Balay       for (k=0; k<count; k++) {
2062d9b7c43dSSatish Balay         aa[0] =  zero;
2063d9b7c43dSSatish Balay         aa    += bs;
2064d9b7c43dSSatish Balay       }
2065f4df32b1SMatthew Knepley       if (diag != 0.0) {
2066f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2067d9b7c43dSSatish Balay       }
2068d9b7c43dSSatish Balay     }
2069bea157c4SSatish Balay   }
2070bea157c4SSatish Balay 
2071606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
20729a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20733a40ed3dSBarry Smith   PetscFunctionReturn(0);
2074d9b7c43dSSatish Balay }
20751c351548SSatish Balay 
20764a2ae208SSatish Balay #undef __FUNCT__
20774a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ"
2078c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
20792d61bbb3SSatish Balay {
20802d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2081e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2082c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2083d0f46423SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
20846849ba73SBarry Smith   PetscErrorCode ierr;
2085c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2086273d9f13SBarry Smith   PetscTruth     roworiented=a->roworiented;
20873f1db9ecSBarry Smith   MatScalar      *ap,value,*aa=a->a,*bap;
20882d61bbb3SSatish Balay 
20892d61bbb3SSatish Balay   PetscFunctionBegin;
20902d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2091085a36d4SBarry Smith     row  = im[k];
2092085a36d4SBarry Smith     brow = row/bs;
20935ef9f2a5SBarry Smith     if (row < 0) continue;
20942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2095d0f46423SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
20962d61bbb3SSatish Balay #endif
20972d61bbb3SSatish Balay     rp   = aj + ai[brow];
20982d61bbb3SSatish Balay     ap   = aa + bs2*ai[brow];
20992d61bbb3SSatish Balay     rmax = imax[brow];
21002d61bbb3SSatish Balay     nrow = ailen[brow];
21012d61bbb3SSatish Balay     low  = 0;
2102c71e6ed7SBarry Smith     high = nrow;
21032d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
21045ef9f2a5SBarry Smith       if (in[l] < 0) continue;
21052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2106d0f46423SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
21072d61bbb3SSatish Balay #endif
21082d61bbb3SSatish Balay       col = in[l]; bcol = col/bs;
21092d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
21102d61bbb3SSatish Balay       if (roworiented) {
21115ef9f2a5SBarry Smith         value = v[l + k*n];
21122d61bbb3SSatish Balay       } else {
21132d61bbb3SSatish Balay         value = v[k + l*m];
21142d61bbb3SSatish Balay       }
21157cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2116e2ee6c50SBarry Smith       lastcol = col;
21172d61bbb3SSatish Balay       while (high-low > 7) {
21182d61bbb3SSatish Balay         t = (low+high)/2;
21192d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
21202d61bbb3SSatish Balay         else              low  = t;
21212d61bbb3SSatish Balay       }
21222d61bbb3SSatish Balay       for (i=low; i<high; i++) {
21232d61bbb3SSatish Balay         if (rp[i] > bcol) break;
21242d61bbb3SSatish Balay         if (rp[i] == bcol) {
21252d61bbb3SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
21262d61bbb3SSatish Balay           if (is == ADD_VALUES) *bap += value;
21272d61bbb3SSatish Balay           else                  *bap  = value;
21282d61bbb3SSatish Balay           goto noinsert1;
21292d61bbb3SSatish Balay         }
21302d61bbb3SSatish Balay       }
21312d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2132085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2133421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2134c03d1d03SSatish Balay       N = nrow++ - 1; high++;
21352d61bbb3SSatish Balay       /* shift up all the later entries in this row */
21362d61bbb3SSatish Balay       for (ii=N; ii>=i; ii--) {
21372d61bbb3SSatish Balay         rp[ii+1] = rp[ii];
2138549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
21392d61bbb3SSatish Balay       }
2140549d3d68SSatish Balay       if (N>=i) {
2141549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2142549d3d68SSatish Balay       }
21432d61bbb3SSatish Balay       rp[i]                      = bcol;
21442d61bbb3SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
2145085a36d4SBarry Smith       a->nz++;
21462d61bbb3SSatish Balay       noinsert1:;
21472d61bbb3SSatish Balay       low = i;
21482d61bbb3SSatish Balay     }
21492d61bbb3SSatish Balay     ailen[brow] = nrow;
21502d61bbb3SSatish Balay   }
215188e51ccdSHong Zhang   A->same_nonzero = PETSC_FALSE;
21522d61bbb3SSatish Balay   PetscFunctionReturn(0);
21532d61bbb3SSatish Balay }
21542d61bbb3SSatish Balay 
2155db4efbfdSBarry Smith EXTERN PetscErrorCode MatSeqBAIJSetNumericFactorization(Mat,PetscTruth);
21562d61bbb3SSatish Balay 
21574a2ae208SSatish Balay #undef __FUNCT__
21584a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ"
21590481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info)
21602d61bbb3SSatish Balay {
21612d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
21622d61bbb3SSatish Balay   Mat            outA;
2163dfbe8321SBarry Smith   PetscErrorCode ierr;
2164667159a5SBarry Smith   PetscTruth     row_identity,col_identity;
21652d61bbb3SSatish Balay 
21662d61bbb3SSatish Balay   PetscFunctionBegin;
2167d3d32019SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2168667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2169667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2170667159a5SBarry Smith   if (!row_identity || !col_identity) {
2171634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
2172667159a5SBarry Smith   }
21732d61bbb3SSatish Balay 
21742d61bbb3SSatish Balay   outA          = inA;
21755c9eb25fSBarry Smith   inA->factor   = MAT_FACTOR_LU;
21762d61bbb3SSatish Balay 
2177c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2178cf242676SKris Buschelman 
2179c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
2180c3122656SLisandro Dalcin   if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); }
2181c3122656SLisandro Dalcin   a->row = row;
2182c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
2183c3122656SLisandro Dalcin   if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); }
2184c3122656SLisandro Dalcin   a->col = col;
2185c38d4ed2SBarry Smith 
2186c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
21874c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
218852e6d16bSBarry Smith   ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
2189c38d4ed2SBarry Smith 
219058e7c4b3SSatish Balay   ierr = MatSeqBAIJSetNumericFactorization(inA,(PetscTruth)(row_identity && col_identity));CHKERRQ(ierr);
2191c38d4ed2SBarry Smith   if (!a->solve_work) {
2192d0f46423SBarry Smith     ierr = PetscMalloc((inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
2193d0f46423SBarry Smith     ierr = PetscLogObjectMemory(inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2194c38d4ed2SBarry Smith   }
2195719d5645SBarry Smith   ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr);
2196667159a5SBarry Smith 
21972d61bbb3SSatish Balay   PetscFunctionReturn(0);
21982d61bbb3SSatish Balay }
2199d9b7c43dSSatish Balay 
2200fb2e594dSBarry Smith EXTERN_C_BEGIN
22014a2ae208SSatish Balay #undef __FUNCT__
22024a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ"
2203be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
220427a8da17SBarry Smith {
220527a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data;
2206bdb1c0e1SJed Brown   PetscInt    i,nz,mbs;
220727a8da17SBarry Smith 
220827a8da17SBarry Smith   PetscFunctionBegin;
220914db4f74SSatish Balay   nz  = baij->maxnz/baij->bs2;
2210bdb1c0e1SJed Brown   mbs = baij->mbs;
221127a8da17SBarry Smith   for (i=0; i<nz; i++) {
221227a8da17SBarry Smith     baij->j[i] = indices[i];
221327a8da17SBarry Smith   }
221427a8da17SBarry Smith   baij->nz = nz;
2215bdb1c0e1SJed Brown   for (i=0; i<mbs; i++) {
221627a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
221727a8da17SBarry Smith   }
221827a8da17SBarry Smith   PetscFunctionReturn(0);
221927a8da17SBarry Smith }
2220fb2e594dSBarry Smith EXTERN_C_END
222127a8da17SBarry Smith 
22224a2ae208SSatish Balay #undef __FUNCT__
22234a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices"
222427a8da17SBarry Smith /*@
222527a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
222627a8da17SBarry Smith        in the matrix.
222727a8da17SBarry Smith 
222827a8da17SBarry Smith   Input Parameters:
222927a8da17SBarry Smith +  mat - the SeqBAIJ matrix
223027a8da17SBarry Smith -  indices - the column indices
223127a8da17SBarry Smith 
223215091d37SBarry Smith   Level: advanced
223315091d37SBarry Smith 
223427a8da17SBarry Smith   Notes:
223527a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
223627a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
223727a8da17SBarry Smith   of the MatSetValues() operation.
223827a8da17SBarry Smith 
223927a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2240d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
224127a8da17SBarry Smith 
224227a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
224327a8da17SBarry Smith 
224427a8da17SBarry Smith @*/
2245be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
224627a8da17SBarry Smith {
2247c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
224827a8da17SBarry Smith 
224927a8da17SBarry Smith   PetscFunctionBegin;
22504482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
22514482741eSBarry Smith   PetscValidPointer(indices,2);
2252c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
225327a8da17SBarry Smith   if (f) {
225427a8da17SBarry Smith     ierr = (*f)(mat,indices);CHKERRQ(ierr);
225527a8da17SBarry Smith   } else {
2256634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices");
225727a8da17SBarry Smith   }
225827a8da17SBarry Smith   PetscFunctionReturn(0);
225927a8da17SBarry Smith }
226027a8da17SBarry Smith 
22614a2ae208SSatish Balay #undef __FUNCT__
2262985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ"
2263985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2264273d9f13SBarry Smith {
2265273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2266dfbe8321SBarry Smith   PetscErrorCode ierr;
2267c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2268273d9f13SBarry Smith   PetscReal      atmp;
226987828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2270273d9f13SBarry Smith   MatScalar      *aa;
2271c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2272273d9f13SBarry Smith 
2273273d9f13SBarry Smith   PetscFunctionBegin;
2274273d9f13SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2275d0f46423SBarry Smith   bs   = A->rmap->bs;
2276273d9f13SBarry Smith   aa   = a->a;
2277273d9f13SBarry Smith   ai   = a->i;
2278273d9f13SBarry Smith   aj   = a->j;
2279273d9f13SBarry Smith   mbs  = a->mbs;
2280273d9f13SBarry Smith 
22812dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
22821ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2283273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2284d0f46423SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2285273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2286273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2287273d9f13SBarry Smith     brow  = bs*i;
2288273d9f13SBarry Smith     for (j=0; j<ncols; j++){
2289273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++){
2290273d9f13SBarry Smith         for (krow=0; krow<bs; krow++){
2291273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2292273d9f13SBarry Smith           row = brow + krow;    /* row index */
2293a83599f4SBarry Smith           /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */
2294985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2295273d9f13SBarry Smith         }
2296273d9f13SBarry Smith       }
2297273d9f13SBarry Smith       aj++;
2298273d9f13SBarry Smith     }
2299273d9f13SBarry Smith   }
23001ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2301273d9f13SBarry Smith   PetscFunctionReturn(0);
2302273d9f13SBarry Smith }
2303273d9f13SBarry Smith 
23044a2ae208SSatish Balay #undef __FUNCT__
23053c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ"
23063c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
23073c896bc6SHong Zhang {
23083c896bc6SHong Zhang   PetscErrorCode ierr;
23093c896bc6SHong Zhang 
23103c896bc6SHong Zhang   PetscFunctionBegin;
23113c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
23123c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
23133c896bc6SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
23143c896bc6SHong Zhang     Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data;
23153c896bc6SHong Zhang 
2316d0f46423SBarry Smith     if (a->i[A->rmap->N] != b->i[B->rmap->N]) {
23173c896bc6SHong Zhang       SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
23183c896bc6SHong Zhang     }
2319d0f46423SBarry Smith     ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr);
23203c896bc6SHong Zhang   } else {
23213c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
23223c896bc6SHong Zhang   }
23233c896bc6SHong Zhang   PetscFunctionReturn(0);
23243c896bc6SHong Zhang }
23253c896bc6SHong Zhang 
23263c896bc6SHong Zhang #undef __FUNCT__
23274a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ"
2328dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A)
2329273d9f13SBarry Smith {
2330dfbe8321SBarry Smith   PetscErrorCode ierr;
2331273d9f13SBarry Smith 
2332273d9f13SBarry Smith   PetscFunctionBegin;
2333db4efbfdSBarry Smith   ierr =  MatSeqBAIJSetPreallocation_SeqBAIJ(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr);
2334273d9f13SBarry Smith   PetscFunctionReturn(0);
2335273d9f13SBarry Smith }
2336273d9f13SBarry Smith 
23374a2ae208SSatish Balay #undef __FUNCT__
23384a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ"
2339dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2340f2a5309cSSatish Balay {
2341f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
2342f2a5309cSSatish Balay   PetscFunctionBegin;
2343f2a5309cSSatish Balay   *array = a->a;
2344f2a5309cSSatish Balay   PetscFunctionReturn(0);
2345f2a5309cSSatish Balay }
2346f2a5309cSSatish Balay 
23474a2ae208SSatish Balay #undef __FUNCT__
23484a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ"
2349dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2350f2a5309cSSatish Balay {
2351f2a5309cSSatish Balay   PetscFunctionBegin;
2352f2a5309cSSatish Balay   PetscFunctionReturn(0);
2353f2a5309cSSatish Balay }
2354f2a5309cSSatish Balay 
235542ee4b1aSHong Zhang #include "petscblaslapack.h"
235642ee4b1aSHong Zhang #undef __FUNCT__
235742ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ"
2358f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
235942ee4b1aSHong Zhang {
236042ee4b1aSHong Zhang   Mat_SeqBAIJ    *x  = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data;
2361dfbe8321SBarry Smith   PetscErrorCode ierr;
2362d0f46423SBarry Smith   PetscInt       i,bs=Y->rmap->bs,j,bs2;
23630805154bSBarry Smith   PetscBLASInt   one=1,bnz = PetscBLASIntCast(x->nz);
236442ee4b1aSHong Zhang 
236542ee4b1aSHong Zhang   PetscFunctionBegin;
236642ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2367f4df32b1SMatthew Knepley     PetscScalar alpha = a;
2368f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
2369c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2370c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
2371c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
2372c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
2373c537a176SHong Zhang     }
2374c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
2375c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
2376c4319e64SHong Zhang       y->XtoY = X;
2377c009d632SSatish Balay       ierr = PetscObjectReference((PetscObject)X);CHKERRQ(ierr);
2378c537a176SHong Zhang     }
2379c4319e64SHong Zhang     bs2 = bs*bs;
2380c537a176SHong Zhang     for (i=0; i<x->nz; i++) {
2381c4319e64SHong Zhang       j = 0;
2382c4319e64SHong Zhang       while (j < bs2){
2383f4df32b1SMatthew Knepley         y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]);
2384c4319e64SHong Zhang         j++;
2385c537a176SHong Zhang       }
2386c4319e64SHong Zhang     }
23871e2582c4SBarry Smith     ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr);
238842ee4b1aSHong Zhang   } else {
2389f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
239042ee4b1aSHong Zhang   }
239142ee4b1aSHong Zhang   PetscFunctionReturn(0);
239242ee4b1aSHong Zhang }
239342ee4b1aSHong Zhang 
239499cafbc1SBarry Smith #undef __FUNCT__
239599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ"
239699cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
239799cafbc1SBarry Smith {
239899cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
239999cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2400dd6ea824SBarry Smith   MatScalar      *aa = a->a;
240199cafbc1SBarry Smith 
240299cafbc1SBarry Smith   PetscFunctionBegin;
240399cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
240499cafbc1SBarry Smith   PetscFunctionReturn(0);
240599cafbc1SBarry Smith }
240699cafbc1SBarry Smith 
240799cafbc1SBarry Smith #undef __FUNCT__
240899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ"
240999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
241099cafbc1SBarry Smith {
241199cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
241299cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2413dd6ea824SBarry Smith   MatScalar      *aa = a->a;
241499cafbc1SBarry Smith 
241599cafbc1SBarry Smith   PetscFunctionBegin;
241699cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
241799cafbc1SBarry Smith   PetscFunctionReturn(0);
241899cafbc1SBarry Smith }
241999cafbc1SBarry Smith 
24203acb8795SBarry Smith extern PetscErrorCode MatFDColoringCreate_SeqAIJ(Mat,ISColoring,MatFDColoring);
24213acb8795SBarry Smith 
24223acb8795SBarry Smith #undef __FUNCT__
24233acb8795SBarry Smith #define __FUNCT__ "MatGetColumnIJ_SeqBAIJ"
24243acb8795SBarry Smith /*
24253acb8795SBarry Smith     Code almost idential to MatGetColumnIJ_SeqAIJ() should share common code
24263acb8795SBarry Smith */
24273acb8795SBarry Smith PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth inodecompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
24283acb8795SBarry Smith {
24293acb8795SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
24303acb8795SBarry Smith   PetscErrorCode ierr;
24313acb8795SBarry Smith   PetscInt       bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs;
24323acb8795SBarry Smith   PetscInt       nz = a->i[m],row,*jj,mr,col;
24333acb8795SBarry Smith 
24343acb8795SBarry Smith   PetscFunctionBegin;
24353acb8795SBarry Smith   *nn = n;
24363acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
24373acb8795SBarry Smith   if (symmetric) {
24383acb8795SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Not for BAIJ matrices");
24393acb8795SBarry Smith   } else {
24403acb8795SBarry Smith     ierr = PetscMalloc((n+1)*sizeof(PetscInt),&collengths);CHKERRQ(ierr);
24413acb8795SBarry Smith     ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
24423acb8795SBarry Smith     ierr = PetscMalloc((n+1)*sizeof(PetscInt),&cia);CHKERRQ(ierr);
24433acb8795SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&cja);CHKERRQ(ierr);
24443acb8795SBarry Smith     jj = a->j;
24453acb8795SBarry Smith     for (i=0; i<nz; i++) {
24463acb8795SBarry Smith       collengths[jj[i]]++;
24473acb8795SBarry Smith     }
24483acb8795SBarry Smith     cia[0] = oshift;
24493acb8795SBarry Smith     for (i=0; i<n; i++) {
24503acb8795SBarry Smith       cia[i+1] = cia[i] + collengths[i];
24513acb8795SBarry Smith     }
24523acb8795SBarry Smith     ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
24533acb8795SBarry Smith     jj   = a->j;
24543acb8795SBarry Smith     for (row=0; row<m; row++) {
24553acb8795SBarry Smith       mr = a->i[row+1] - a->i[row];
24563acb8795SBarry Smith       for (i=0; i<mr; i++) {
24573acb8795SBarry Smith         col = *jj++;
24583acb8795SBarry Smith         cja[cia[col] + collengths[col]++ - oshift] = row + oshift;
24593acb8795SBarry Smith       }
24603acb8795SBarry Smith     }
24613acb8795SBarry Smith     ierr = PetscFree(collengths);CHKERRQ(ierr);
24623acb8795SBarry Smith     *ia = cia; *ja = cja;
24633acb8795SBarry Smith   }
24643acb8795SBarry Smith   PetscFunctionReturn(0);
24653acb8795SBarry Smith }
24663acb8795SBarry Smith 
24673acb8795SBarry Smith #undef __FUNCT__
24683acb8795SBarry Smith #define __FUNCT__ "MatRestoreColumnIJ_SeqBAIJ"
24693acb8795SBarry Smith PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth inodecompressed,PetscInt *n,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
24703acb8795SBarry Smith {
24713acb8795SBarry Smith   PetscErrorCode ierr;
24723acb8795SBarry Smith 
24733acb8795SBarry Smith   PetscFunctionBegin;
24743acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
24753acb8795SBarry Smith   ierr = PetscFree(*ia);CHKERRQ(ierr);
24763acb8795SBarry Smith   ierr = PetscFree(*ja);CHKERRQ(ierr);
24773acb8795SBarry Smith   PetscFunctionReturn(0);
24783acb8795SBarry Smith }
24793acb8795SBarry Smith 
2480f6d58c54SBarry Smith #undef __FUNCT__
2481f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringApply_BAIJ"
2482f6d58c54SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat J,MatFDColoring coloring,Vec x1,MatStructure *flag,void *sctx)
2483f6d58c54SBarry Smith {
2484f6d58c54SBarry Smith   PetscErrorCode (*f)(void*,Vec,Vec,void*) = (PetscErrorCode (*)(void*,Vec,Vec,void *))coloring->f;
2485f6d58c54SBarry Smith   PetscErrorCode ierr;
2486f6d58c54SBarry Smith   PetscInt       bs = J->rmap->bs,i,j,k,start,end,l,row,col,*srows,**vscaleforrow,m1,m2;
2487f6d58c54SBarry Smith   PetscScalar    dx,*y,*xx,*w3_array;
2488f6d58c54SBarry Smith   PetscScalar    *vscale_array;
2489f6d58c54SBarry Smith   PetscReal      epsilon = coloring->error_rel,umin = coloring->umin,unorm;
2490f6d58c54SBarry Smith   Vec            w1=coloring->w1,w2=coloring->w2,w3;
2491f6d58c54SBarry Smith   void           *fctx = coloring->fctx;
2492f6d58c54SBarry Smith   PetscTruth     flg = PETSC_FALSE;
2493f6d58c54SBarry Smith   PetscInt       ctype=coloring->ctype,N,col_start=0,col_end=0;
2494f6d58c54SBarry Smith   Vec            x1_tmp;
2495f6d58c54SBarry Smith 
2496f6d58c54SBarry Smith   PetscFunctionBegin;
2497f6d58c54SBarry Smith   PetscValidHeaderSpecific(J,MAT_COOKIE,1);
2498f6d58c54SBarry Smith   PetscValidHeaderSpecific(coloring,MAT_FDCOLORING_COOKIE,2);
2499f6d58c54SBarry Smith   PetscValidHeaderSpecific(x1,VEC_COOKIE,3);
2500f6d58c54SBarry Smith   if (!f) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatFDColoringSetFunction()");
2501f6d58c54SBarry Smith 
2502f6d58c54SBarry Smith   ierr = PetscLogEventBegin(MAT_FDColoringApply,coloring,J,x1,0);CHKERRQ(ierr);
2503f6d58c54SBarry Smith   ierr = MatSetUnfactored(J);CHKERRQ(ierr);
2504f6d58c54SBarry Smith   ierr = PetscOptionsGetTruth(PETSC_NULL,"-mat_fd_coloring_dont_rezero",&flg,PETSC_NULL);CHKERRQ(ierr);
2505f6d58c54SBarry Smith   if (flg) {
2506f6d58c54SBarry Smith     ierr = PetscInfo(coloring,"Not calling MatZeroEntries()\n");CHKERRQ(ierr);
2507f6d58c54SBarry Smith   } else {
2508f6d58c54SBarry Smith     PetscTruth assembled;
2509f6d58c54SBarry Smith     ierr = MatAssembled(J,&assembled);CHKERRQ(ierr);
2510f6d58c54SBarry Smith     if (assembled) {
2511f6d58c54SBarry Smith       ierr = MatZeroEntries(J);CHKERRQ(ierr);
2512f6d58c54SBarry Smith     }
2513f6d58c54SBarry Smith   }
2514f6d58c54SBarry Smith 
2515f6d58c54SBarry Smith   x1_tmp = x1;
2516f6d58c54SBarry Smith   if (!coloring->vscale){
2517f6d58c54SBarry Smith     ierr = VecDuplicate(x1_tmp,&coloring->vscale);CHKERRQ(ierr);
2518f6d58c54SBarry Smith   }
2519f6d58c54SBarry Smith 
2520f6d58c54SBarry Smith   /*
2521f6d58c54SBarry Smith     This is a horrible, horrible, hack. See DMMGComputeJacobian_Multigrid() it inproperly sets
2522f6d58c54SBarry Smith     coloring->F for the coarser grids from the finest
2523f6d58c54SBarry Smith   */
2524f6d58c54SBarry Smith   if (coloring->F) {
2525f6d58c54SBarry Smith     ierr = VecGetLocalSize(coloring->F,&m1);CHKERRQ(ierr);
2526f6d58c54SBarry Smith     ierr = VecGetLocalSize(w1,&m2);CHKERRQ(ierr);
2527f6d58c54SBarry Smith     if (m1 != m2) {
2528f6d58c54SBarry Smith       coloring->F = 0;
2529f6d58c54SBarry Smith       }
2530f6d58c54SBarry Smith     }
2531f6d58c54SBarry Smith 
2532f6d58c54SBarry Smith   if (coloring->htype[0] == 'w') { /* tacky test; need to make systematic if we add other approaches to computing h*/
2533f6d58c54SBarry Smith     ierr = VecNorm(x1_tmp,NORM_2,&unorm);CHKERRQ(ierr);
2534f6d58c54SBarry Smith   }
2535f6d58c54SBarry Smith   ierr = VecGetOwnershipRange(w1,&start,&end);CHKERRQ(ierr); /* OwnershipRange is used by ghosted x! */
2536f6d58c54SBarry Smith 
2537f6d58c54SBarry Smith   /* Set w1 = F(x1) */
2538f6d58c54SBarry Smith   if (coloring->F) {
2539f6d58c54SBarry Smith     w1          = coloring->F; /* use already computed value of function */
2540f6d58c54SBarry Smith     coloring->F = 0;
2541f6d58c54SBarry Smith   } else {
2542f6d58c54SBarry Smith     ierr = PetscLogEventBegin(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2543f6d58c54SBarry Smith     ierr = (*f)(sctx,x1_tmp,w1,fctx);CHKERRQ(ierr);
2544f6d58c54SBarry Smith     ierr = PetscLogEventEnd(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2545f6d58c54SBarry Smith   }
2546f6d58c54SBarry Smith 
2547f6d58c54SBarry Smith   if (!coloring->w3) {
2548f6d58c54SBarry Smith     ierr = VecDuplicate(x1_tmp,&coloring->w3);CHKERRQ(ierr);
2549f6d58c54SBarry Smith     ierr = PetscLogObjectParent(coloring,coloring->w3);CHKERRQ(ierr);
2550f6d58c54SBarry Smith   }
2551f6d58c54SBarry Smith   w3 = coloring->w3;
2552f6d58c54SBarry Smith 
2553f6d58c54SBarry Smith     CHKMEMQ;
2554f6d58c54SBarry Smith     /* Compute all the local scale factors, including ghost points */
2555f6d58c54SBarry Smith   ierr = VecGetLocalSize(x1_tmp,&N);CHKERRQ(ierr);
2556f6d58c54SBarry Smith   ierr = VecGetArray(x1_tmp,&xx);CHKERRQ(ierr);
2557f6d58c54SBarry Smith   ierr = VecGetArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2558f6d58c54SBarry Smith   if (ctype == IS_COLORING_GHOSTED){
2559f6d58c54SBarry Smith     col_start = 0; col_end = N;
2560f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GLOBAL){
2561f6d58c54SBarry Smith     xx = xx - start;
2562f6d58c54SBarry Smith     vscale_array = vscale_array - start;
2563f6d58c54SBarry Smith     col_start = start; col_end = N + start;
2564f6d58c54SBarry Smith   }    CHKMEMQ;
2565f6d58c54SBarry Smith   for (col=col_start; col<col_end; col++){
2566f6d58c54SBarry Smith     /* Loop over each local column, vscale[col] = 1./(epsilon*dx[col]) */
2567f6d58c54SBarry Smith     if (coloring->htype[0] == 'w') {
2568f6d58c54SBarry Smith       dx = 1.0 + unorm;
2569f6d58c54SBarry Smith     } else {
2570f6d58c54SBarry Smith       dx  = xx[col];
2571f6d58c54SBarry Smith     }
2572f6d58c54SBarry Smith     if (dx == 0.0) dx = 1.0;
2573f6d58c54SBarry Smith #if !defined(PETSC_USE_COMPLEX)
2574f6d58c54SBarry Smith     if (dx < umin && dx >= 0.0)      dx = umin;
2575f6d58c54SBarry Smith     else if (dx < 0.0 && dx > -umin) dx = -umin;
2576f6d58c54SBarry Smith #else
2577f6d58c54SBarry Smith     if (PetscAbsScalar(dx) < umin && PetscRealPart(dx) >= 0.0)     dx = umin;
2578f6d58c54SBarry Smith     else if (PetscRealPart(dx) < 0.0 && PetscAbsScalar(dx) < umin) dx = -umin;
2579f6d58c54SBarry Smith #endif
2580f6d58c54SBarry Smith     dx               *= epsilon;
2581f6d58c54SBarry Smith     vscale_array[col] = 1.0/dx;
2582f6d58c54SBarry Smith   }     CHKMEMQ;
2583f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL)  vscale_array = vscale_array + start;
2584f6d58c54SBarry Smith   ierr = VecRestoreArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2585f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL){
2586f6d58c54SBarry Smith     ierr = VecGhostUpdateBegin(coloring->vscale,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2587f6d58c54SBarry Smith     ierr = VecGhostUpdateEnd(coloring->vscale,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2588f6d58c54SBarry Smith   }
2589f6d58c54SBarry Smith         CHKMEMQ;
2590f6d58c54SBarry Smith   if (coloring->vscaleforrow) {
2591f6d58c54SBarry Smith     vscaleforrow = coloring->vscaleforrow;
2592f6d58c54SBarry Smith   } else {
2593f6d58c54SBarry Smith     SETERRQ(PETSC_ERR_ARG_NULL,"Null Object: coloring->vscaleforrow");
2594f6d58c54SBarry Smith   }
2595f6d58c54SBarry Smith 
2596f6d58c54SBarry Smith 
2597f6d58c54SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&srows);CHKERRQ(ierr);
2598f6d58c54SBarry Smith   /*
2599f6d58c54SBarry Smith     Loop over each color
2600f6d58c54SBarry Smith   */
2601f6d58c54SBarry Smith   ierr = VecGetArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2602f6d58c54SBarry Smith   for (k=0; k<coloring->ncolors; k++) {
2603f6d58c54SBarry Smith     coloring->currentcolor = k;
2604f6d58c54SBarry Smith     for (i=0; i<bs; i++) {
2605f6d58c54SBarry Smith       ierr = VecCopy(x1_tmp,w3);CHKERRQ(ierr);
2606f6d58c54SBarry Smith       ierr = VecGetArray(w3,&w3_array);CHKERRQ(ierr);
2607f6d58c54SBarry Smith       if (ctype == IS_COLORING_GLOBAL) w3_array = w3_array - start;
2608f6d58c54SBarry Smith       /*
2609f6d58c54SBarry Smith 	Loop over each column associated with color
2610f6d58c54SBarry Smith 	adding the perturbation to the vector w3.
2611f6d58c54SBarry Smith       */
2612f6d58c54SBarry Smith       for (l=0; l<coloring->ncolumns[k]; l++) {
2613f6d58c54SBarry Smith 	col = i + bs*coloring->columns[k][l];    /* local column of the matrix we are probing for */
2614f6d58c54SBarry Smith 	if (coloring->htype[0] == 'w') {
2615f6d58c54SBarry Smith 	  dx = 1.0 + unorm;
2616f6d58c54SBarry Smith 	} else {
2617f6d58c54SBarry Smith 	  dx  = xx[col];
2618f6d58c54SBarry Smith 	}
2619f6d58c54SBarry Smith 	if (dx == 0.0) dx = 1.0;
2620f6d58c54SBarry Smith #if !defined(PETSC_USE_COMPLEX)
2621f6d58c54SBarry Smith 	if (dx < umin && dx >= 0.0)      dx = umin;
2622f6d58c54SBarry Smith 	else if (dx < 0.0 && dx > -umin) dx = -umin;
2623f6d58c54SBarry Smith #else
2624f6d58c54SBarry Smith 	if (PetscAbsScalar(dx) < umin && PetscRealPart(dx) >= 0.0)     dx = umin;
2625f6d58c54SBarry Smith 	else if (PetscRealPart(dx) < 0.0 && PetscAbsScalar(dx) < umin) dx = -umin;
2626f6d58c54SBarry Smith #endif
2627f6d58c54SBarry Smith 	dx            *= epsilon;
2628f6d58c54SBarry Smith 	if (!PetscAbsScalar(dx)) SETERRQ(PETSC_ERR_PLIB,"Computed 0 differencing parameter");
2629f6d58c54SBarry Smith 	w3_array[col] += dx;
2630f6d58c54SBarry Smith       }
2631f6d58c54SBarry Smith       if (ctype == IS_COLORING_GLOBAL) w3_array = w3_array + start;
2632f6d58c54SBarry Smith       ierr = VecRestoreArray(w3,&w3_array);CHKERRQ(ierr);
2633f6d58c54SBarry Smith 
2634f6d58c54SBarry Smith       /*
2635f6d58c54SBarry Smith 	Evaluate function at w3 = x1 + dx (here dx is a vector of perturbations)
2636f6d58c54SBarry Smith 	w2 = F(x1 + dx) - F(x1)
2637f6d58c54SBarry Smith       */
2638f6d58c54SBarry Smith       ierr = PetscLogEventBegin(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2639f6d58c54SBarry Smith       ierr = (*f)(sctx,w3,w2,fctx);CHKERRQ(ierr);
2640f6d58c54SBarry Smith       ierr = PetscLogEventEnd(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2641f6d58c54SBarry Smith       ierr = VecAXPY(w2,-1.0,w1);CHKERRQ(ierr);
2642f6d58c54SBarry Smith 
2643f6d58c54SBarry Smith       /*
2644f6d58c54SBarry Smith 	Loop over rows of vector, putting results into Jacobian matrix
2645f6d58c54SBarry Smith       */
2646f6d58c54SBarry Smith       ierr = VecGetArray(w2,&y);CHKERRQ(ierr);
2647f6d58c54SBarry Smith       for (l=0; l<coloring->nrows[k]; l++) {
2648f6d58c54SBarry Smith 	row    = bs*coloring->rows[k][l];             /* local row index */
2649f6d58c54SBarry Smith 	col    = i + bs*coloring->columnsforrow[k][l];    /* global column index */
2650f6d58c54SBarry Smith         for (j=0; j<bs; j++) {
2651f6d58c54SBarry Smith   	  y[row+j] *= vscale_array[j+bs*vscaleforrow[k][l]];
2652f6d58c54SBarry Smith           srows[j]  = row + start + j;
2653f6d58c54SBarry Smith         }
2654f6d58c54SBarry Smith 	ierr   = MatSetValues(J,bs,srows,1,&col,y+row,INSERT_VALUES);CHKERRQ(ierr);
2655f6d58c54SBarry Smith       }
2656f6d58c54SBarry Smith       ierr = VecRestoreArray(w2,&y);CHKERRQ(ierr);
2657f6d58c54SBarry Smith     }
2658f6d58c54SBarry Smith   } /* endof for each color */
2659f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) xx = xx + start;
2660f6d58c54SBarry Smith   ierr = VecRestoreArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2661f6d58c54SBarry Smith   ierr = VecRestoreArray(x1_tmp,&xx);CHKERRQ(ierr);
2662f6d58c54SBarry Smith   ierr = PetscFree(srows);CHKERRQ(ierr);
2663f6d58c54SBarry Smith 
2664f6d58c54SBarry Smith   coloring->currentcolor = -1;
2665f6d58c54SBarry Smith   ierr  = MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2666f6d58c54SBarry Smith   ierr  = MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2667f6d58c54SBarry Smith   ierr = PetscLogEventEnd(MAT_FDColoringApply,coloring,J,x1,0);CHKERRQ(ierr);
2668f6d58c54SBarry Smith   PetscFunctionReturn(0);
2669f6d58c54SBarry Smith }
267099cafbc1SBarry Smith 
26712593348eSBarry Smith /* -------------------------------------------------------------------*/
2672cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2673cc2dc46cSBarry Smith        MatGetRow_SeqBAIJ,
2674cc2dc46cSBarry Smith        MatRestoreRow_SeqBAIJ,
2675cc2dc46cSBarry Smith        MatMult_SeqBAIJ_N,
267697304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N,
26777c922b88SBarry Smith        MatMultTranspose_SeqBAIJ,
26787c922b88SBarry Smith        MatMultTransposeAdd_SeqBAIJ,
2679db4efbfdSBarry Smith        0,
2680cc2dc46cSBarry Smith        0,
2681cc2dc46cSBarry Smith        0,
268297304618SKris Buschelman /*10*/ 0,
2683cc2dc46cSBarry Smith        MatLUFactor_SeqBAIJ,
2684cc2dc46cSBarry Smith        0,
2685b6490206SBarry Smith        0,
2686f2501298SSatish Balay        MatTranspose_SeqBAIJ,
268797304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ,
2688cc2dc46cSBarry Smith        MatEqual_SeqBAIJ,
2689cc2dc46cSBarry Smith        MatGetDiagonal_SeqBAIJ,
2690cc2dc46cSBarry Smith        MatDiagonalScale_SeqBAIJ,
2691cc2dc46cSBarry Smith        MatNorm_SeqBAIJ,
269297304618SKris Buschelman /*20*/ 0,
2693cc2dc46cSBarry Smith        MatAssemblyEnd_SeqBAIJ,
2694cc2dc46cSBarry Smith        MatSetOption_SeqBAIJ,
2695cc2dc46cSBarry Smith        MatZeroEntries_SeqBAIJ,
2696d519adbfSMatthew Knepley /*24*/ MatZeroRows_SeqBAIJ,
2697db4efbfdSBarry Smith        0,
2698db4efbfdSBarry Smith        0,
2699db4efbfdSBarry Smith        0,
2700db4efbfdSBarry Smith        0,
2701d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_SeqBAIJ,
2702db4efbfdSBarry Smith        0,
2703db4efbfdSBarry Smith        0,
2704f2a5309cSSatish Balay        MatGetArray_SeqBAIJ,
2705f2a5309cSSatish Balay        MatRestoreArray_SeqBAIJ,
2706d519adbfSMatthew Knepley /*34*/ MatDuplicate_SeqBAIJ,
2707cc2dc46cSBarry Smith        0,
2708cc2dc46cSBarry Smith        0,
2709cc2dc46cSBarry Smith        MatILUFactor_SeqBAIJ,
2710cc2dc46cSBarry Smith        0,
2711d519adbfSMatthew Knepley /*39*/ MatAXPY_SeqBAIJ,
2712cc2dc46cSBarry Smith        MatGetSubMatrices_SeqBAIJ,
2713cc2dc46cSBarry Smith        MatIncreaseOverlap_SeqBAIJ,
2714cc2dc46cSBarry Smith        MatGetValues_SeqBAIJ,
27153c896bc6SHong Zhang        MatCopy_SeqBAIJ,
2716d519adbfSMatthew Knepley /*44*/ 0,
2717cc2dc46cSBarry Smith        MatScale_SeqBAIJ,
2718cc2dc46cSBarry Smith        0,
2719cc2dc46cSBarry Smith        0,
2720c8342467SHong Zhang        MatILUDTFactor_SeqBAIJ,
2721d519adbfSMatthew Knepley /*49*/ 0,
27223b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
272392c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
27243acb8795SBarry Smith        MatGetColumnIJ_SeqBAIJ,
27253acb8795SBarry Smith        MatRestoreColumnIJ_SeqBAIJ,
27263acb8795SBarry Smith /*54*/ MatFDColoringCreate_SeqAIJ,
2727cc2dc46cSBarry Smith        0,
2728cc2dc46cSBarry Smith        0,
2729cc2dc46cSBarry Smith        0,
2730d3825aa8SBarry Smith        MatSetValuesBlocked_SeqBAIJ,
2731d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_SeqBAIJ,
2732b9b97703SBarry Smith        MatDestroy_SeqBAIJ,
2733b9b97703SBarry Smith        MatView_SeqBAIJ,
2734357abbc8SBarry Smith        0,
2735273d9f13SBarry Smith        0,
2736d519adbfSMatthew Knepley /*64*/ 0,
2737273d9f13SBarry Smith        0,
2738273d9f13SBarry Smith        0,
2739273d9f13SBarry Smith        0,
2740273d9f13SBarry Smith        0,
2741d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_SeqBAIJ,
2742273d9f13SBarry Smith        0,
2743c87e5d42SMatthew Knepley        MatConvert_Basic,
274497304618SKris Buschelman        0,
274597304618SKris Buschelman        0,
2746d519adbfSMatthew Knepley /*74*/ 0,
2747f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
274897304618SKris Buschelman        0,
274997304618SKris Buschelman        0,
275097304618SKris Buschelman        0,
2751d519adbfSMatthew Knepley /*79*/ 0,
275297304618SKris Buschelman        0,
275397304618SKris Buschelman        0,
275497304618SKris Buschelman        0,
2755865e5f61SKris Buschelman        MatLoad_SeqBAIJ,
2756d519adbfSMatthew Knepley /*84*/ 0,
2757b01c7715SBarry Smith        0,
2758b01c7715SBarry Smith        0,
2759b01c7715SBarry Smith        0,
2760865e5f61SKris Buschelman        0,
2761d519adbfSMatthew Knepley /*89*/ 0,
2762865e5f61SKris Buschelman        0,
2763865e5f61SKris Buschelman        0,
2764865e5f61SKris Buschelman        0,
2765865e5f61SKris Buschelman        0,
2766d519adbfSMatthew Knepley /*94*/ 0,
2767865e5f61SKris Buschelman        0,
2768865e5f61SKris Buschelman        0,
276999cafbc1SBarry Smith        0,
277099cafbc1SBarry Smith        0,
2771d519adbfSMatthew Knepley /*99*/0,
277299cafbc1SBarry Smith        0,
277399cafbc1SBarry Smith        0,
277499cafbc1SBarry Smith        0,
277599cafbc1SBarry Smith        0,
2776d519adbfSMatthew Knepley /*104*/0,
277799cafbc1SBarry Smith        MatRealPart_SeqBAIJ,
27782af78befSBarry Smith        MatImaginaryPart_SeqBAIJ,
27792af78befSBarry Smith        0,
27802af78befSBarry Smith        0,
2781d519adbfSMatthew Knepley /*109*/0,
27822af78befSBarry Smith        0,
27832af78befSBarry Smith        0,
27842af78befSBarry Smith        0,
27852af78befSBarry Smith        MatMissingDiagonal_SeqBAIJ
2786d519adbfSMatthew Knepley /*114*/
278799cafbc1SBarry Smith };
27882593348eSBarry Smith 
27893e90b805SBarry Smith EXTERN_C_BEGIN
27904a2ae208SSatish Balay #undef __FUNCT__
27914a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ"
2792be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat)
27933e90b805SBarry Smith {
27943e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
2795d0f46423SBarry Smith   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
2796dfbe8321SBarry Smith   PetscErrorCode ierr;
27973e90b805SBarry Smith 
27983e90b805SBarry Smith   PetscFunctionBegin;
27993e90b805SBarry Smith   if (aij->nonew != 1) {
2800512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
28013e90b805SBarry Smith   }
28023e90b805SBarry Smith 
28033e90b805SBarry Smith   /* allocate space for values if not already there */
28043e90b805SBarry Smith   if (!aij->saved_values) {
280587828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
28063e90b805SBarry Smith   }
28073e90b805SBarry Smith 
28083e90b805SBarry Smith   /* copy values over */
280987828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
28103e90b805SBarry Smith   PetscFunctionReturn(0);
28113e90b805SBarry Smith }
28123e90b805SBarry Smith EXTERN_C_END
28133e90b805SBarry Smith 
28143e90b805SBarry Smith EXTERN_C_BEGIN
28154a2ae208SSatish Balay #undef __FUNCT__
28164a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ"
2817be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat)
28183e90b805SBarry Smith {
28193e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
28206849ba73SBarry Smith   PetscErrorCode ierr;
2821d0f46423SBarry Smith   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
28223e90b805SBarry Smith 
28233e90b805SBarry Smith   PetscFunctionBegin;
28243e90b805SBarry Smith   if (aij->nonew != 1) {
2825512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
28263e90b805SBarry Smith   }
28273e90b805SBarry Smith   if (!aij->saved_values) {
2828634064b4SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
28293e90b805SBarry Smith   }
28303e90b805SBarry Smith 
28313e90b805SBarry Smith   /* copy values over */
283287828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
28333e90b805SBarry Smith   PetscFunctionReturn(0);
28343e90b805SBarry Smith }
28353e90b805SBarry Smith EXTERN_C_END
28363e90b805SBarry Smith 
2837273d9f13SBarry Smith EXTERN_C_BEGIN
2838f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
2839f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2840273d9f13SBarry Smith EXTERN_C_END
2841273d9f13SBarry Smith 
2842273d9f13SBarry Smith EXTERN_C_BEGIN
28434a2ae208SSatish Balay #undef __FUNCT__
2844a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ"
2845be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2846a23d5eceSKris Buschelman {
2847a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
28486849ba73SBarry Smith   PetscErrorCode ierr;
2849db4efbfdSBarry Smith   PetscInt       i,mbs,nbs,bs2,newbs = PetscAbs(bs);
2850ab93d7beSBarry Smith   PetscTruth     flg,skipallocation = PETSC_FALSE;
2851a23d5eceSKris Buschelman 
2852a23d5eceSKris Buschelman   PetscFunctionBegin;
2853a23d5eceSKris Buschelman 
2854ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2855ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2856ab93d7beSBarry Smith     nz             = 0;
2857ab93d7beSBarry Smith   }
28588c07d4e3SBarry Smith 
2859db4efbfdSBarry Smith   if (bs < 0) {
28607adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr);
2861db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
28628c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2863db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2864db4efbfdSBarry Smith   }
2865a23d5eceSKris Buschelman   if (nnz && newbs != bs) {
2866634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz");
2867a23d5eceSKris Buschelman   }
2868a23d5eceSKris Buschelman   bs   = newbs;
2869a23d5eceSKris Buschelman 
28707408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
28717408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2872d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2873d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2874899cda47SBarry Smith 
2875899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2876899cda47SBarry Smith 
2877d0f46423SBarry Smith   mbs  = B->rmap->n/bs;
2878d0f46423SBarry Smith   nbs  = B->cmap->n/bs;
2879a23d5eceSKris Buschelman   bs2  = bs*bs;
2880a23d5eceSKris Buschelman 
2881d0f46423SBarry Smith   if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) {
2882d0f46423SBarry Smith     SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs);
2883a23d5eceSKris Buschelman   }
2884a23d5eceSKris Buschelman 
2885a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
288677431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
2887a23d5eceSKris Buschelman   if (nnz) {
2888a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
288977431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
289077431f27SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
2891a23d5eceSKris Buschelman     }
2892a23d5eceSKris Buschelman   }
2893a23d5eceSKris Buschelman 
2894a23d5eceSKris Buschelman   b       = (Mat_SeqBAIJ*)B->data;
28957adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
28968c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
28978c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
28988c07d4e3SBarry Smith 
2899a23d5eceSKris Buschelman   if (!flg) {
2900a23d5eceSKris Buschelman     switch (bs) {
2901a23d5eceSKris Buschelman     case 1:
2902a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_1;
2903a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_1;
29046d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_1;
2905a23d5eceSKris Buschelman       break;
2906a23d5eceSKris Buschelman     case 2:
2907a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_2;
2908a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_2;
2909b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_2;
2910a23d5eceSKris Buschelman       break;
2911a23d5eceSKris Buschelman     case 3:
2912a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_3;
2913a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_3;
2914b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_3;
2915a23d5eceSKris Buschelman       break;
2916a23d5eceSKris Buschelman     case 4:
2917a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_4;
2918a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_4;
2919b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_4;
2920a23d5eceSKris Buschelman       break;
2921a23d5eceSKris Buschelman     case 5:
2922a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_5;
2923a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_5;
2924b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_5;
2925a23d5eceSKris Buschelman       break;
2926a23d5eceSKris Buschelman     case 6:
2927a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_6;
2928a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_6;
29296d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_6;
2930a23d5eceSKris Buschelman       break;
2931a23d5eceSKris Buschelman     case 7:
2932a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_7;
2933a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_7;
29346d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_7;
2935a23d5eceSKris Buschelman       break;
2936a23d5eceSKris Buschelman     default:
2937a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_N;
2938a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_N;
2939a23d5eceSKris Buschelman       break;
2940a23d5eceSKris Buschelman     }
2941a23d5eceSKris Buschelman   }
2942d0f46423SBarry Smith   B->rmap->bs      = bs;
2943a23d5eceSKris Buschelman   b->mbs     = mbs;
2944a23d5eceSKris Buschelman   b->nbs     = nbs;
2945ab93d7beSBarry Smith   if (!skipallocation) {
29462ee49352SLisandro Dalcin     if (!b->imax) {
2947ab93d7beSBarry Smith       ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
29482ee49352SLisandro Dalcin     }
2949ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
2950ab93d7beSBarry Smith     for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
2951a23d5eceSKris Buschelman     if (!nnz) {
2952a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2953a23d5eceSKris Buschelman       else if (nz <= 0)        nz = 1;
2954a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
2955a23d5eceSKris Buschelman       nz = nz*mbs;
2956a23d5eceSKris Buschelman     } else {
2957a23d5eceSKris Buschelman       nz = 0;
2958a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
2959a23d5eceSKris Buschelman     }
2960a23d5eceSKris Buschelman 
2961a23d5eceSKris Buschelman     /* allocate the matrix space */
29622ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
2963d0f46423SBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap->N+1,PetscInt,&b->i);CHKERRQ(ierr);
2964d0f46423SBarry Smith     ierr = PetscLogObjectMemory(B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2965a23d5eceSKris Buschelman     ierr  = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
2966c1ac3661SBarry Smith     ierr  = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
2967a23d5eceSKris Buschelman     b->singlemalloc = PETSC_TRUE;
2968a23d5eceSKris Buschelman     b->i[0] = 0;
2969a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
2970a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
2971a23d5eceSKris Buschelman     }
2972e6b907acSBarry Smith     b->free_a     = PETSC_TRUE;
2973e6b907acSBarry Smith     b->free_ij    = PETSC_TRUE;
2974e811da20SHong Zhang   } else {
2975e6b907acSBarry Smith     b->free_a     = PETSC_FALSE;
2976e6b907acSBarry Smith     b->free_ij    = PETSC_FALSE;
2977ab93d7beSBarry Smith   }
2978a23d5eceSKris Buschelman 
2979d0f46423SBarry Smith   B->rmap->bs          = bs;
2980a23d5eceSKris Buschelman   b->bs2              = bs2;
2981a23d5eceSKris Buschelman   b->mbs              = mbs;
2982a23d5eceSKris Buschelman   b->nz               = 0;
2983a23d5eceSKris Buschelman   b->maxnz            = nz*bs2;
2984a23d5eceSKris Buschelman   B->info.nz_unneeded = (PetscReal)b->maxnz;
2985a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2986a23d5eceSKris Buschelman }
2987a23d5eceSKris Buschelman EXTERN_C_END
2988a23d5eceSKris Buschelman 
2989b24902e0SBarry Smith EXTERN_C_BEGIN
2990725b52f3SLisandro Dalcin #undef __FUNCT__
2991725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ"
2992cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2993725b52f3SLisandro Dalcin {
2994725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
2995725b52f3SLisandro Dalcin   PetscScalar    *values=0;
2996725b52f3SLisandro Dalcin   PetscErrorCode ierr;
2997725b52f3SLisandro Dalcin 
2998725b52f3SLisandro Dalcin   PetscFunctionBegin;
2999725b52f3SLisandro Dalcin 
3000725b52f3SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
30017408324eSLisandro Dalcin 
30027408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
30037408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
3004d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
3005d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
3006d0f46423SBarry Smith   m = B->rmap->n/bs;
3007725b52f3SLisandro Dalcin 
3008cf12db73SBarry Smith   if (ii[0] != 0) { SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); }
3009725b52f3SLisandro Dalcin   ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr);
3010725b52f3SLisandro Dalcin   for(i=0; i<m; i++) {
3011cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
3012725b52f3SLisandro Dalcin     if (nz < 0) { SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); }
3013725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
3014725b52f3SLisandro Dalcin     nnz[i] = nz;
3015725b52f3SLisandro Dalcin   }
3016725b52f3SLisandro Dalcin   ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
3017725b52f3SLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
3018725b52f3SLisandro Dalcin 
3019725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
3020725b52f3SLisandro Dalcin   if (!values) {
3021725b52f3SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
3022725b52f3SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
3023725b52f3SLisandro Dalcin   }
3024725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
3025cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
3026cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
3027cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
3028725b52f3SLisandro Dalcin     ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
3029725b52f3SLisandro Dalcin   }
3030725b52f3SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
3031725b52f3SLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3032725b52f3SLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3033725b52f3SLisandro Dalcin 
3034725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3035725b52f3SLisandro Dalcin }
3036725b52f3SLisandro Dalcin EXTERN_C_END
3037725b52f3SLisandro Dalcin 
3038725b52f3SLisandro Dalcin 
3039207126cbSBarry Smith EXTERN_C_BEGIN
3040b24902e0SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*);
3041db4efbfdSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable_seqbaij_petsc(Mat,MatFactorType,Mat*);
3042b24902e0SBarry Smith EXTERN_C_END
3043b24902e0SBarry Smith 
30440bad9183SKris Buschelman /*MC
3045fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
30460bad9183SKris Buschelman    block sparse compressed row format.
30470bad9183SKris Buschelman 
30480bad9183SKris Buschelman    Options Database Keys:
30490bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
30500bad9183SKris Buschelman 
30510bad9183SKris Buschelman   Level: beginner
30520bad9183SKris Buschelman 
3053f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
30540bad9183SKris Buschelman M*/
30550bad9183SKris Buschelman 
3056b24902e0SBarry Smith 
3057a23d5eceSKris Buschelman EXTERN_C_BEGIN
3058a23d5eceSKris Buschelman #undef __FUNCT__
30594a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ"
3060be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B)
30612593348eSBarry Smith {
3062dfbe8321SBarry Smith   PetscErrorCode ierr;
3063c1ac3661SBarry Smith   PetscMPIInt    size;
3064b6490206SBarry Smith   Mat_SeqBAIJ    *b;
30653b2fbd54SBarry Smith 
30663a40ed3dSBarry Smith   PetscFunctionBegin;
30677adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr);
306829bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
3069b6490206SBarry Smith 
307038f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr);
3071b0a32e0cSBarry Smith   B->data = (void*)b;
3072549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
307390f02eecSBarry Smith   B->mapping               = 0;
30742593348eSBarry Smith   b->row                   = 0;
30752593348eSBarry Smith   b->col                   = 0;
3076e51c0b9cSSatish Balay   b->icol                  = 0;
30772593348eSBarry Smith   b->reallocs              = 0;
30783e90b805SBarry Smith   b->saved_values          = 0;
30792593348eSBarry Smith 
3080c4992f7dSBarry Smith   b->roworiented           = PETSC_TRUE;
30812593348eSBarry Smith   b->nonew                 = 0;
30822593348eSBarry Smith   b->diag                  = 0;
30832593348eSBarry Smith   b->solve_work            = 0;
3084de6a44a3SBarry Smith   b->mult_work             = 0;
30852a1b7f2aSHong Zhang   B->spptr                 = 0;
30860e6d2581SBarry Smith   B->info.nz_unneeded      = (PetscReal)b->maxnz;
3087a9817697SBarry Smith   b->keepnonzeropattern    = PETSC_FALSE;
3088c4319e64SHong Zhang   b->xtoy                  = 0;
3089c4319e64SHong Zhang   b->XtoY                  = 0;
309073e7a558SHong Zhang   b->compressedrow.use     = PETSC_FALSE;
309126e093fcSHong Zhang   b->compressedrow.nrows   = 0;
309273e7a558SHong Zhang   b->compressedrow.i       = PETSC_NULL;
309373e7a558SHong Zhang   b->compressedrow.rindex  = PETSC_NULL;
309473e7a558SHong Zhang   b->compressedrow.checked = PETSC_FALSE;
309588e51ccdSHong Zhang   B->same_nonzero          = PETSC_FALSE;
30964e220ebcSLois Curfman McInnes 
3097db4efbfdSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactorAvailable_seqbaij_petsc_C",
3098db4efbfdSBarry Smith                                      "MatGetFactorAvailable_seqbaij_petsc",
3099db4efbfdSBarry Smith                                      MatGetFactorAvailable_seqbaij_petsc);CHKERRQ(ierr);
3100b24902e0SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C",
3101b24902e0SBarry Smith                                      "MatGetFactor_seqbaij_petsc",
3102b24902e0SBarry Smith                                      MatGetFactor_seqbaij_petsc);CHKERRQ(ierr);
310343516a2dSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C",
310443516a2dSKris Buschelman                                      "MatInvertBlockDiagonal_SeqBAIJ",
310543516a2dSKris Buschelman                                       MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
3106f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
31073e90b805SBarry Smith                                      "MatStoreValues_SeqBAIJ",
3108bc4b532fSSatish Balay                                       MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
3109f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
31103e90b805SBarry Smith                                      "MatRetrieveValues_SeqBAIJ",
3111bc4b532fSSatish Balay                                       MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
3112f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",
311327a8da17SBarry Smith                                      "MatSeqBAIJSetColumnIndices_SeqBAIJ",
3114bc4b532fSSatish Balay                                       MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
3115a6175056SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C",
3116273d9f13SBarry Smith                                      "MatConvert_SeqBAIJ_SeqAIJ",
3117273d9f13SBarry Smith                                       MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
3118a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",
3119a0e1a404SHong Zhang                                      "MatConvert_SeqBAIJ_SeqSBAIJ",
3120a0e1a404SHong Zhang                                       MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
3121a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C",
3122a23d5eceSKris Buschelman                                      "MatSeqBAIJSetPreallocation_SeqBAIJ",
3123a23d5eceSKris Buschelman                                       MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
3124725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",
3125725b52f3SLisandro Dalcin                                      "MatSeqBAIJSetPreallocationCSR_SeqBAIJ",
3126725b52f3SLisandro Dalcin                                       MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr);
312717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
31283a40ed3dSBarry Smith   PetscFunctionReturn(0);
31292593348eSBarry Smith }
3130273d9f13SBarry Smith EXTERN_C_END
31312593348eSBarry Smith 
31324a2ae208SSatish Balay #undef __FUNCT__
3133b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ"
313416a2bf60SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues,PetscTruth mallocmatspace)
31352593348eSBarry Smith {
3136b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
31376849ba73SBarry Smith   PetscErrorCode ierr;
3138a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
3139de6a44a3SBarry Smith 
31403a40ed3dSBarry Smith   PetscFunctionBegin;
314129bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
31422593348eSBarry Smith 
314333b91e9fSSatish Balay   ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr);
3144b6490206SBarry Smith   for (i=0; i<mbs; i++) {
31452593348eSBarry Smith     c->imax[i] = a->imax[i];
31462593348eSBarry Smith     c->ilen[i] = a->ilen[i];
31472593348eSBarry Smith   }
31482593348eSBarry Smith 
31492593348eSBarry Smith   /* allocate the matrix space */
315016a2bf60SHong Zhang   if (mallocmatspace){
3151a96a251dSBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
315216a2bf60SHong Zhang     ierr = PetscLogObjectMemory(C,a->i[mbs]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
3153c4992f7dSBarry Smith     c->singlemalloc = PETSC_TRUE;
3154c1ac3661SBarry Smith     ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
3155b6490206SBarry Smith     if (mbs > 0) {
3156c1ac3661SBarry Smith       ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
31572e8a6d31SBarry Smith       if (cpvalues == MAT_COPY_VALUES) {
3158549d3d68SSatish Balay         ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
31592e8a6d31SBarry Smith       } else {
3160549d3d68SSatish Balay         ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
31612593348eSBarry Smith       }
31622593348eSBarry Smith     }
316316a2bf60SHong Zhang   }
316416a2bf60SHong Zhang 
31652593348eSBarry Smith   c->roworiented = a->roworiented;
31662593348eSBarry Smith   c->nonew       = a->nonew;
3167d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,A->rmap,C->rmap);CHKERRQ(ierr);
3168d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,A->cmap,C->cmap);CHKERRQ(ierr);
31695c9eb25fSBarry Smith   c->bs2         = a->bs2;
31705c9eb25fSBarry Smith   c->mbs         = a->mbs;
31715c9eb25fSBarry Smith   c->nbs         = a->nbs;
31722593348eSBarry Smith 
31732593348eSBarry Smith   if (a->diag) {
3174c1ac3661SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
317552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
3176b6490206SBarry Smith     for (i=0; i<mbs; i++) {
31772593348eSBarry Smith       c->diag[i] = a->diag[i];
31782593348eSBarry Smith     }
317998305bb5SBarry Smith   } else c->diag        = 0;
31802593348eSBarry Smith   c->nz                 = a->nz;
31812593348eSBarry Smith   c->maxnz              = a->maxnz;
31822593348eSBarry Smith   c->solve_work         = 0;
31837fc0212eSBarry Smith   c->mult_work          = 0;
3184e6b907acSBarry Smith   c->free_a             = PETSC_TRUE;
3185e6b907acSBarry Smith   c->free_ij            = PETSC_TRUE;
3186273d9f13SBarry Smith   C->preallocated       = PETSC_TRUE;
3187273d9f13SBarry Smith   C->assembled          = PETSC_TRUE;
318888e51ccdSHong Zhang 
318988e51ccdSHong Zhang   c->compressedrow.use     = a->compressedrow.use;
319088e51ccdSHong Zhang   c->compressedrow.nrows   = a->compressedrow.nrows;
319188e51ccdSHong Zhang   c->compressedrow.checked = a->compressedrow.checked;
319288e51ccdSHong Zhang   if ( a->compressedrow.checked && a->compressedrow.use){
319388e51ccdSHong Zhang     i = a->compressedrow.nrows;
319488e51ccdSHong Zhang     ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr);
319588e51ccdSHong Zhang     c->compressedrow.rindex = c->compressedrow.i + i + 1;
319688e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr);
319788e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr);
319888e51ccdSHong Zhang   } else {
319988e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
320088e51ccdSHong Zhang     c->compressedrow.i      = PETSC_NULL;
320188e51ccdSHong Zhang     c->compressedrow.rindex = PETSC_NULL;
320288e51ccdSHong Zhang   }
320388e51ccdSHong Zhang   C->same_nonzero = A->same_nonzero;
32047adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
32053a40ed3dSBarry Smith   PetscFunctionReturn(0);
32062593348eSBarry Smith }
32072593348eSBarry Smith 
32084a2ae208SSatish Balay #undef __FUNCT__
3209b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ"
3210b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
3211b24902e0SBarry Smith {
3212b24902e0SBarry Smith     PetscErrorCode ierr;
3213b24902e0SBarry Smith 
3214b24902e0SBarry Smith   PetscFunctionBegin;
32155c9eb25fSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr);
3216d0f46423SBarry Smith   ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr);
32175c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
321816a2bf60SHong Zhang   ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues,PETSC_TRUE);
3219b24902e0SBarry Smith   PetscFunctionReturn(0);
3220b24902e0SBarry Smith }
3221b24902e0SBarry Smith 
3222b24902e0SBarry Smith #undef __FUNCT__
32234a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ"
3224a313700dSBarry Smith PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, const MatType type,Mat *A)
32252593348eSBarry Smith {
3226b6490206SBarry Smith   Mat_SeqBAIJ    *a;
32272593348eSBarry Smith   Mat            B;
32286849ba73SBarry Smith   PetscErrorCode ierr;
3229b24ad042SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
3230c1ac3661SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
3231c1ac3661SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
3232c1ac3661SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
3233b24ad042SBarry Smith   PetscMPIInt    size;
3234b24ad042SBarry Smith   int            fd;
323587828ca2SBarry Smith   PetscScalar    *aa;
323619bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
32372593348eSBarry Smith 
32383a40ed3dSBarry Smith   PetscFunctionBegin;
32398c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
32408c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
32418c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
3242de6a44a3SBarry Smith   bs2  = bs*bs;
3243b6490206SBarry Smith 
3244d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
324529bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
3246b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
32470752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
3248552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
32492593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
32502593348eSBarry Smith 
3251d64ed03dSBarry Smith   if (header[3] < 0) {
325229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
3253d64ed03dSBarry Smith   }
3254d64ed03dSBarry Smith 
325529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
325635aab85fSBarry Smith 
325735aab85fSBarry Smith   /*
325835aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
325935aab85fSBarry Smith     divisible by the blocksize
326035aab85fSBarry Smith   */
3261b6490206SBarry Smith   mbs        = M/bs;
326235aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
326335aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
326435aab85fSBarry Smith   else                  mbs++;
326535aab85fSBarry Smith   if (extra_rows) {
32661e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
326735aab85fSBarry Smith   }
3268b6490206SBarry Smith 
32692593348eSBarry Smith   /* read in row lengths */
3270c1ac3661SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
32710752156aSBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
327235aab85fSBarry Smith   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
32732593348eSBarry Smith 
3274b6490206SBarry Smith   /* read in column indices */
3275c1ac3661SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
32760752156aSBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
327735aab85fSBarry Smith   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
3278b6490206SBarry Smith 
3279b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
3280c1ac3661SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr);
3281c1ac3661SBarry Smith   ierr     = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
3282c1ac3661SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
3283c1ac3661SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
328435aab85fSBarry Smith   masked   = mask + mbs;
3285b6490206SBarry Smith   rowcount = 0; nzcount = 0;
3286b6490206SBarry Smith   for (i=0; i<mbs; i++) {
328735aab85fSBarry Smith     nmask = 0;
3288b6490206SBarry Smith     for (j=0; j<bs; j++) {
3289b6490206SBarry Smith       kmax = rowlengths[rowcount];
3290b6490206SBarry Smith       for (k=0; k<kmax; k++) {
329135aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
329235aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
3293b6490206SBarry Smith       }
3294b6490206SBarry Smith       rowcount++;
3295b6490206SBarry Smith     }
329635aab85fSBarry Smith     browlengths[i] += nmask;
329735aab85fSBarry Smith     /* zero out the mask elements we set */
329835aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3299b6490206SBarry Smith   }
3300b6490206SBarry Smith 
33012593348eSBarry Smith   /* create our matrix */
3302f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&B);
3303f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);
330478ae41b4SKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
3305ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr);
3306b6490206SBarry Smith   a = (Mat_SeqBAIJ*)B->data;
33072593348eSBarry Smith 
33082593348eSBarry Smith   /* set matrix "i" values */
3309de6a44a3SBarry Smith   a->i[0] = 0;
3310b6490206SBarry Smith   for (i=1; i<= mbs; i++) {
3311b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
3312b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
33132593348eSBarry Smith   }
3314b6490206SBarry Smith   a->nz         = 0;
3315b6490206SBarry Smith   for (i=0; i<mbs; i++) a->nz += browlengths[i];
33162593348eSBarry Smith 
3317b6490206SBarry Smith   /* read in nonzero values */
331887828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
33190752156aSBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
332035aab85fSBarry Smith   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
3321b6490206SBarry Smith 
3322b6490206SBarry Smith   /* set "a" and "j" values into matrix */
3323b6490206SBarry Smith   nzcount = 0; jcount = 0;
3324b6490206SBarry Smith   for (i=0; i<mbs; i++) {
3325b6490206SBarry Smith     nzcountb = nzcount;
332635aab85fSBarry Smith     nmask    = 0;
3327b6490206SBarry Smith     for (j=0; j<bs; j++) {
3328b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3329b6490206SBarry Smith       for (k=0; k<kmax; k++) {
333035aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
333135aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
3332b6490206SBarry Smith       }
3333b6490206SBarry Smith     }
3334de6a44a3SBarry Smith     /* sort the masked values */
3335433994e6SBarry Smith     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3336de6a44a3SBarry Smith 
3337b6490206SBarry Smith     /* set "j" values into matrix */
3338b6490206SBarry Smith     maskcount = 1;
333935aab85fSBarry Smith     for (j=0; j<nmask; j++) {
334035aab85fSBarry Smith       a->j[jcount++]  = masked[j];
3341de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
3342b6490206SBarry Smith     }
3343b6490206SBarry Smith     /* set "a" values into matrix */
3344de6a44a3SBarry Smith     ishift = bs2*a->i[i];
3345b6490206SBarry Smith     for (j=0; j<bs; j++) {
3346b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3347b6490206SBarry Smith       for (k=0; k<kmax; k++) {
3348de6a44a3SBarry Smith         tmp       = jj[nzcountb]/bs ;
3349de6a44a3SBarry Smith         block     = mask[tmp] - 1;
3350de6a44a3SBarry Smith         point     = jj[nzcountb] - bs*tmp;
3351de6a44a3SBarry Smith         idx       = ishift + bs2*block + j + bs*point;
3352375fe846SBarry Smith         a->a[idx] = (MatScalar)aa[nzcountb++];
3353b6490206SBarry Smith       }
3354b6490206SBarry Smith     }
335535aab85fSBarry Smith     /* zero out the mask elements we set */
335635aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3357b6490206SBarry Smith   }
335829bbc08cSBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3359b6490206SBarry Smith 
3360606d414cSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3361606d414cSSatish Balay   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3362606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
3363606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
3364606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
3365b6490206SBarry Smith 
336678ae41b4SKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
336778ae41b4SKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
33689c01be13SBarry Smith   ierr = MatView_Private(B);CHKERRQ(ierr);
336978ae41b4SKris Buschelman 
337078ae41b4SKris Buschelman   *A = B;
33713a40ed3dSBarry Smith   PetscFunctionReturn(0);
33722593348eSBarry Smith }
33732593348eSBarry Smith 
33744a2ae208SSatish Balay #undef __FUNCT__
33754a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ"
3376273d9f13SBarry Smith /*@C
3377273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3378273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3379273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3380273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3381273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
33822593348eSBarry Smith 
3383273d9f13SBarry Smith    Collective on MPI_Comm
3384273d9f13SBarry Smith 
3385273d9f13SBarry Smith    Input Parameters:
3386273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3387273d9f13SBarry Smith .  bs - size of block
3388273d9f13SBarry Smith .  m - number of rows
3389273d9f13SBarry Smith .  n - number of columns
339035d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
339135d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
3392273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3393273d9f13SBarry Smith 
3394273d9f13SBarry Smith    Output Parameter:
3395273d9f13SBarry Smith .  A - the matrix
3396273d9f13SBarry Smith 
3397175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3398ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3399175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3400175b88e8SBarry Smith 
3401273d9f13SBarry Smith    Options Database Keys:
3402273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3403273d9f13SBarry Smith                      block calculations (much slower)
3404273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3405273d9f13SBarry Smith 
3406273d9f13SBarry Smith    Level: intermediate
3407273d9f13SBarry Smith 
3408273d9f13SBarry Smith    Notes:
3409d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3410d1be2dadSMatthew Knepley 
341149a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
341249a6f317SBarry Smith 
341335d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
341435d8aa7fSBarry Smith 
3415273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3416273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3417273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3418273d9f13SBarry Smith 
3419273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3420273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3421273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3422273d9f13SBarry Smith    matrices.
3423273d9f13SBarry Smith 
3424273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ()
3425273d9f13SBarry Smith @*/
3426be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3427273d9f13SBarry Smith {
3428dfbe8321SBarry Smith   PetscErrorCode ierr;
3429273d9f13SBarry Smith 
3430273d9f13SBarry Smith   PetscFunctionBegin;
3431f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3432f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3433273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3434ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3435273d9f13SBarry Smith   PetscFunctionReturn(0);
3436273d9f13SBarry Smith }
3437273d9f13SBarry Smith 
34384a2ae208SSatish Balay #undef __FUNCT__
34394a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation"
3440273d9f13SBarry Smith /*@C
3441273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3442273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3443273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3444273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3445273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3446273d9f13SBarry Smith 
3447273d9f13SBarry Smith    Collective on MPI_Comm
3448273d9f13SBarry Smith 
3449273d9f13SBarry Smith    Input Parameters:
3450273d9f13SBarry Smith +  A - the matrix
3451273d9f13SBarry Smith .  bs - size of block
3452273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3453273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
3454273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3455273d9f13SBarry Smith 
3456273d9f13SBarry Smith    Options Database Keys:
3457273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3458273d9f13SBarry Smith                      block calculations (much slower)
3459273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3460273d9f13SBarry Smith 
3461273d9f13SBarry Smith    Level: intermediate
3462273d9f13SBarry Smith 
3463273d9f13SBarry Smith    Notes:
346449a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
346549a6f317SBarry Smith 
3466aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3467aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3468aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3469aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3470aa95bbe8SBarry Smith 
3471273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3472273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3473273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3474273d9f13SBarry Smith 
3475273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3476273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3477273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3478273d9f13SBarry Smith    matrices.
3479273d9f13SBarry Smith 
3480aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo()
3481273d9f13SBarry Smith @*/
3482be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3483273d9f13SBarry Smith {
3484c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
3485273d9f13SBarry Smith 
3486273d9f13SBarry Smith   PetscFunctionBegin;
3487a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3488a23d5eceSKris Buschelman   if (f) {
3489a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
3490273d9f13SBarry Smith   }
3491273d9f13SBarry Smith   PetscFunctionReturn(0);
3492273d9f13SBarry Smith }
3493a1d92eedSBarry Smith 
3494c75a6043SHong Zhang #undef __FUNCT__
3495725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR"
3496725b52f3SLisandro Dalcin /*@C
3497725b52f3SLisandro Dalcin    MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format
3498725b52f3SLisandro Dalcin    (the default sequential PETSc format).
3499725b52f3SLisandro Dalcin 
3500725b52f3SLisandro Dalcin    Collective on MPI_Comm
3501725b52f3SLisandro Dalcin 
3502725b52f3SLisandro Dalcin    Input Parameters:
3503725b52f3SLisandro Dalcin +  A - the matrix
3504725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3505725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3506725b52f3SLisandro Dalcin -  v - optional values in the matrix
3507725b52f3SLisandro Dalcin 
3508725b52f3SLisandro Dalcin    Level: developer
3509725b52f3SLisandro Dalcin 
3510725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse
3511725b52f3SLisandro Dalcin 
3512725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3513725b52f3SLisandro Dalcin @*/
3514725b52f3SLisandro Dalcin PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3515725b52f3SLisandro Dalcin {
3516725b52f3SLisandro Dalcin   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
3517725b52f3SLisandro Dalcin 
3518725b52f3SLisandro Dalcin   PetscFunctionBegin;
3519725b52f3SLisandro Dalcin   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
3520725b52f3SLisandro Dalcin   if (f) {
3521725b52f3SLisandro Dalcin     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
3522725b52f3SLisandro Dalcin   }
3523725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3524725b52f3SLisandro Dalcin }
3525725b52f3SLisandro Dalcin 
3526725b52f3SLisandro Dalcin 
3527725b52f3SLisandro Dalcin #undef __FUNCT__
3528c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays"
3529c75a6043SHong Zhang /*@
3530c75a6043SHong Zhang      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements
3531c75a6043SHong Zhang               (upper triangular entries in CSR format) provided by the user.
3532c75a6043SHong Zhang 
3533c75a6043SHong Zhang      Collective on MPI_Comm
3534c75a6043SHong Zhang 
3535c75a6043SHong Zhang    Input Parameters:
3536c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3537c75a6043SHong Zhang .  bs - size of block
3538c75a6043SHong Zhang .  m - number of rows
3539c75a6043SHong Zhang .  n - number of columns
3540c75a6043SHong Zhang .  i - row indices
3541c75a6043SHong Zhang .  j - column indices
3542c75a6043SHong Zhang -  a - matrix values
3543c75a6043SHong Zhang 
3544c75a6043SHong Zhang    Output Parameter:
3545c75a6043SHong Zhang .  mat - the matrix
3546c75a6043SHong Zhang 
3547c75a6043SHong Zhang    Level: intermediate
3548c75a6043SHong Zhang 
3549c75a6043SHong Zhang    Notes:
3550c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3551c75a6043SHong Zhang     once the matrix is destroyed
3552c75a6043SHong Zhang 
3553c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3554c75a6043SHong Zhang 
3555c75a6043SHong Zhang        The i and j indices are 0 based
3556c75a6043SHong Zhang 
3557c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ()
3558c75a6043SHong Zhang 
3559c75a6043SHong Zhang @*/
3560c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat)
3561c75a6043SHong Zhang {
3562c75a6043SHong Zhang   PetscErrorCode ierr;
3563c75a6043SHong Zhang   PetscInt       ii;
3564c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3565c75a6043SHong Zhang 
3566c75a6043SHong Zhang   PetscFunctionBegin;
3567c75a6043SHong Zhang   if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
3568c75a6043SHong Zhang   if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3569c75a6043SHong Zhang 
3570c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3571c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3572c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3573c75a6043SHong Zhang   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3574c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3575c75a6043SHong Zhang   ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr);
3576c75a6043SHong Zhang 
3577c75a6043SHong Zhang   baij->i = i;
3578c75a6043SHong Zhang   baij->j = j;
3579c75a6043SHong Zhang   baij->a = a;
3580c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3581c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3582e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3583e6b907acSBarry Smith   baij->free_ij       = PETSC_FALSE;
3584c75a6043SHong Zhang 
3585c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3586c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3587c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3588c75a6043SHong Zhang     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3589c75a6043SHong Zhang #endif
3590c75a6043SHong Zhang   }
3591c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3592c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3593c75a6043SHong Zhang     if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3594c75a6043SHong Zhang     if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3595c75a6043SHong Zhang   }
3596c75a6043SHong Zhang #endif
3597c75a6043SHong Zhang 
3598c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3599c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3600c75a6043SHong Zhang   PetscFunctionReturn(0);
3601c75a6043SHong Zhang }
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