xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 719d5645761d844e4357b7ee00a3296dffe0b787)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
32593348eSBarry Smith /*
4b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
52593348eSBarry Smith   matrix storage format.
62593348eSBarry Smith */
770f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h"
81a6a6d98SBarry Smith #include "src/inline/spops.h"
9325e03aeSBarry Smith #include "petscsys.h"                     /*I "petscmat.h" I*/
103b547af2SSatish Balay 
11b01c7715SBarry Smith #include "src/inline/ilu.h"
12b01c7715SBarry Smith 
13b01c7715SBarry Smith #undef __FUNCT__
1443516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal"
15bc08b0f1SBarry Smith /*@
1643516a2dSKris Buschelman   MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries.
1743516a2dSKris Buschelman 
1843516a2dSKris Buschelman   Collective on Mat
1943516a2dSKris Buschelman 
2043516a2dSKris Buschelman   Input Parameters:
2143516a2dSKris Buschelman . mat - the matrix
2243516a2dSKris Buschelman 
2343516a2dSKris Buschelman   Level: advanced
2443516a2dSKris Buschelman @*/
2546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat)
2643516a2dSKris Buschelman {
2743516a2dSKris Buschelman   PetscErrorCode ierr,(*f)(Mat);
2843516a2dSKris Buschelman 
2943516a2dSKris Buschelman   PetscFunctionBegin;
3043516a2dSKris Buschelman   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
3143516a2dSKris Buschelman   if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
3243516a2dSKris Buschelman   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
3343516a2dSKris Buschelman 
3443516a2dSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr);
3543516a2dSKris Buschelman   if (f) {
3643516a2dSKris Buschelman     ierr = (*f)(mat);CHKERRQ(ierr);
3743516a2dSKris Buschelman   } else {
3843516a2dSKris Buschelman     SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ.");
3943516a2dSKris Buschelman   }
4043516a2dSKris Buschelman   PetscFunctionReturn(0);
4143516a2dSKris Buschelman }
4243516a2dSKris Buschelman 
4343516a2dSKris Buschelman EXTERN_C_BEGIN
4443516a2dSKris Buschelman #undef __FUNCT__
45b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ"
4646129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A)
47b01c7715SBarry Smith {
48b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
496849ba73SBarry Smith   PetscErrorCode ierr;
50d0f46423SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs;
5197e5c40aSBarry Smith   MatScalar      *v = a->a,*odiag,*diag,*mdiag;
5262bba022SBarry Smith   PetscReal      shift = 0.0;
53b01c7715SBarry Smith 
54b01c7715SBarry Smith   PetscFunctionBegin;
55b01c7715SBarry Smith   if (a->idiagvalid) PetscFunctionReturn(0);
56b01c7715SBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
57b01c7715SBarry Smith   diag_offset = a->diag;
58b01c7715SBarry Smith   if (!a->idiag) {
59b01c7715SBarry Smith     ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr);
60b01c7715SBarry Smith   }
61b01c7715SBarry Smith   diag  = a->idiag;
62b01c7715SBarry Smith   mdiag = a->idiag+bs*bs*mbs;
63b01c7715SBarry Smith   /* factor and invert each block */
64521d7252SBarry Smith   switch (bs){
65b01c7715SBarry Smith     case 2:
66b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
67b01c7715SBarry Smith         odiag   = v + 4*diag_offset[i];
68b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
69b01c7715SBarry Smith 	mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
7062bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr);
71b01c7715SBarry Smith 	diag    += 4;
72b01c7715SBarry Smith 	mdiag   += 4;
73b01c7715SBarry Smith       }
74b01c7715SBarry Smith       break;
75b01c7715SBarry Smith     case 3:
76b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
77b01c7715SBarry Smith         odiag    = v + 9*diag_offset[i];
78b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
79b01c7715SBarry Smith         diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
80b01c7715SBarry Smith         diag[8]  = odiag[8];
81b01c7715SBarry Smith         mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
82b01c7715SBarry Smith         mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7];
83b01c7715SBarry Smith         mdiag[8] = odiag[8];
8462bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr);
85b01c7715SBarry Smith 	diag    += 9;
86b01c7715SBarry Smith 	mdiag   += 9;
87b01c7715SBarry Smith       }
88b01c7715SBarry Smith       break;
89b01c7715SBarry Smith     case 4:
90b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
91b01c7715SBarry Smith         odiag  = v + 16*diag_offset[i];
92b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
93b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
9462bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr);
95b01c7715SBarry Smith 	diag  += 16;
96b01c7715SBarry Smith 	mdiag += 16;
97b01c7715SBarry Smith       }
98b01c7715SBarry Smith       break;
99b01c7715SBarry Smith     case 5:
100b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
101b01c7715SBarry Smith         odiag = v + 25*diag_offset[i];
102b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
103b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
10462bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr);
105b01c7715SBarry Smith 	diag  += 25;
106b01c7715SBarry Smith 	mdiag += 25;
107b01c7715SBarry Smith       }
108b01c7715SBarry Smith       break;
109b01c7715SBarry Smith     default:
110521d7252SBarry Smith       SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs);
111b01c7715SBarry Smith   }
112b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
113b01c7715SBarry Smith   PetscFunctionReturn(0);
114b01c7715SBarry Smith }
11543516a2dSKris Buschelman EXTERN_C_END
116b01c7715SBarry Smith 
117b01c7715SBarry Smith #undef __FUNCT__
1186d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1"
1196d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1206d3beeddSMatthew Knepley {
1216d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
1226d3beeddSMatthew Knepley   PetscScalar        *x,x1,s1;
123dd6ea824SBarry Smith   const PetscScalar  *b;
124dd6ea824SBarry Smith   const MatScalar    *aa = a->a, *idiag,*mdiag,*v;
1256d3beeddSMatthew Knepley   PetscErrorCode     ierr;
1266d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
1276d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
1286d3beeddSMatthew Knepley 
1296d3beeddSMatthew Knepley   PetscFunctionBegin;
1306d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
1316d3beeddSMatthew Knepley   its = its*lits;
1326d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1336d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
1346d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
1356d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
1366d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
1376d3beeddSMatthew Knepley 
1386d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
1396d3beeddSMatthew Knepley 
1406d3beeddSMatthew Knepley   diag  = a->diag;
1416d3beeddSMatthew Knepley   idiag = a->idiag;
1426d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1436d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
1446d3beeddSMatthew Knepley 
1456d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
1466d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
1476d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0];
1486d3beeddSMatthew Knepley       i2     = 1;
1496d3beeddSMatthew Knepley       idiag += 1;
1506d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
1516d3beeddSMatthew Knepley         v     = aa + ai[i];
1526d3beeddSMatthew Knepley         vi    = aj + ai[i];
1536d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
1546d3beeddSMatthew Knepley         s1    = b[i2];
1556d3beeddSMatthew Knepley         while (nz--) {
1566d3beeddSMatthew Knepley           idx  = (*vi++);
1576d3beeddSMatthew Knepley           x1   = x[idx];
1586d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1596d3beeddSMatthew Knepley           v   += 1;
1606d3beeddSMatthew Knepley         }
1616d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
1626d3beeddSMatthew Knepley         idiag   += 1;
1636d3beeddSMatthew Knepley         i2      += 1;
1646d3beeddSMatthew Knepley       }
1656d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
1666d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1676d3beeddSMatthew Knepley     }
1686d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
1696d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1706d3beeddSMatthew Knepley       i2    = 0;
1716d3beeddSMatthew Knepley       mdiag = a->idiag+a->mbs;
1726d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
1736d3beeddSMatthew Knepley         x1      = x[i2];
1746d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1;
1756d3beeddSMatthew Knepley         mdiag  += 1;
1766d3beeddSMatthew Knepley         i2     += 1;
1776d3beeddSMatthew Knepley       }
1786d3beeddSMatthew Knepley       ierr = PetscLogFlops(m);CHKERRQ(ierr);
1796d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
180d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
1816d3beeddSMatthew Knepley     }
1826d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
1836d3beeddSMatthew Knepley       idiag   = a->idiag+a->mbs - 1;
1846d3beeddSMatthew Knepley       i2      = m - 1;
1856d3beeddSMatthew Knepley       x1      = x[i2];
1866d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1;
1876d3beeddSMatthew Knepley       idiag -= 1;
1886d3beeddSMatthew Knepley       i2    -= 1;
1896d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
1906d3beeddSMatthew Knepley         v     = aa + (diag[i]+1);
1916d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
1926d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
1936d3beeddSMatthew Knepley         s1    = x[i2];
1946d3beeddSMatthew Knepley         while (nz--) {
1956d3beeddSMatthew Knepley           idx  = (*vi++);
1966d3beeddSMatthew Knepley           x1   = x[idx];
1976d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1986d3beeddSMatthew Knepley           v   += 1;
1996d3beeddSMatthew Knepley         }
2006d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
2016d3beeddSMatthew Knepley         idiag   -= 2;
2026d3beeddSMatthew Knepley         i2      -= 1;
2036d3beeddSMatthew Knepley       }
2046d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
2056d3beeddSMatthew Knepley     }
2066d3beeddSMatthew Knepley   } else {
2076d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
2086d3beeddSMatthew Knepley   }
2096d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2106d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
2116d3beeddSMatthew Knepley   PetscFunctionReturn(0);
2126d3beeddSMatthew Knepley }
2136d3beeddSMatthew Knepley 
2146d3beeddSMatthew Knepley #undef __FUNCT__
215b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2"
216c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
217b01c7715SBarry Smith {
218b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
219b01c7715SBarry Smith   PetscScalar        *x,x1,x2,s1,s2;
220dd6ea824SBarry Smith   const PetscScalar  *b;
221dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
222dfbe8321SBarry Smith   PetscErrorCode     ierr;
223c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
224c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
225b01c7715SBarry Smith 
226b01c7715SBarry Smith   PetscFunctionBegin;
22751f519a2SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
228b01c7715SBarry Smith   its = its*lits;
22977431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
230b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
231b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
23271f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
233b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
234b01c7715SBarry Smith 
235b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
236b01c7715SBarry Smith 
237b01c7715SBarry Smith   diag  = a->diag;
238b01c7715SBarry Smith   idiag = a->idiag;
2391ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2401ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
241b01c7715SBarry Smith 
242b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
243b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
244b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[2];
245b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[3];
246b01c7715SBarry Smith       i2     = 2;
247b01c7715SBarry Smith       idiag += 4;
248b01c7715SBarry Smith       for (i=1; i<m; i++) {
249b01c7715SBarry Smith 	v     = aa + 4*ai[i];
250b01c7715SBarry Smith 	vi    = aj + ai[i];
251b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
252b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1];
253b01c7715SBarry Smith 	while (nz--) {
254b01c7715SBarry Smith 	  idx  = 2*(*vi++);
255b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
256b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
257b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
258b01c7715SBarry Smith 	  v   += 4;
259b01c7715SBarry Smith 	}
260b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
261b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
262b01c7715SBarry Smith         idiag   += 4;
263b01c7715SBarry Smith         i2      += 2;
264b01c7715SBarry Smith       }
265b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
266efee365bSSatish Balay       ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr);
267b01c7715SBarry Smith     }
268b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
269b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
270b01c7715SBarry Smith       i2    = 0;
271b01c7715SBarry Smith       mdiag = a->idiag+4*a->mbs;
272b01c7715SBarry Smith       for (i=0; i<m; i++) {
273b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1];
274b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[2]*x2;
275b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2;
276b01c7715SBarry Smith         mdiag  += 4;
277b01c7715SBarry Smith         i2     += 2;
278b01c7715SBarry Smith       }
279efee365bSSatish Balay       ierr = PetscLogFlops(6*m);CHKERRQ(ierr);
280b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
281d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
282b01c7715SBarry Smith     }
283b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
284b01c7715SBarry Smith       idiag   = a->idiag+4*a->mbs - 4;
285b01c7715SBarry Smith       i2      = 2*m - 2;
286b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1];
287b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[2]*x2;
288b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[3]*x2;
289b01c7715SBarry Smith       idiag -= 4;
290b01c7715SBarry Smith       i2    -= 2;
291b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
292b01c7715SBarry Smith 	v     = aa + 4*(diag[i]+1);
293b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
294b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
295b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1];
296b01c7715SBarry Smith 	while (nz--) {
297b01c7715SBarry Smith 	  idx  = 2*(*vi++);
298b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
299b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
300b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
301b01c7715SBarry Smith 	  v   += 4;
302b01c7715SBarry Smith 	}
303b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
304b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
305b01c7715SBarry Smith         idiag   -= 4;
306b01c7715SBarry Smith         i2      -= 2;
307b01c7715SBarry Smith       }
308efee365bSSatish Balay       ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr);
309b01c7715SBarry Smith     }
310b01c7715SBarry Smith   } else {
311634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
312b01c7715SBarry Smith   }
3131ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3141ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
315b01c7715SBarry Smith   PetscFunctionReturn(0);
316b01c7715SBarry Smith }
317b01c7715SBarry Smith 
318b01c7715SBarry Smith #undef __FUNCT__
319b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3"
320c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
321b01c7715SBarry Smith {
322b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
323b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,s1,s2,s3;
324dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
325dd6ea824SBarry Smith   const PetscScalar  *b;
326dfbe8321SBarry Smith   PetscErrorCode     ierr;
327c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
328c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
329b01c7715SBarry Smith 
330b01c7715SBarry Smith   PetscFunctionBegin;
331b01c7715SBarry Smith   its = its*lits;
33271f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
33377431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
334b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
335b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
33671f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
337b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
338b01c7715SBarry Smith 
339b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
340b01c7715SBarry Smith 
341b01c7715SBarry Smith   diag  = a->diag;
342b01c7715SBarry Smith   idiag = a->idiag;
3431ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3441ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
345b01c7715SBarry Smith 
346b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
347b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
348b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6];
349b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7];
350b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8];
351b01c7715SBarry Smith       i2     = 3;
352b01c7715SBarry Smith       idiag += 9;
353b01c7715SBarry Smith       for (i=1; i<m; i++) {
354b01c7715SBarry Smith         v     = aa + 9*ai[i];
355b01c7715SBarry Smith         vi    = aj + ai[i];
356b01c7715SBarry Smith         nz    = diag[i] - ai[i];
357b01c7715SBarry Smith         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2];
358b01c7715SBarry Smith         while (nz--) {
359b01c7715SBarry Smith           idx  = 3*(*vi++);
360b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx];x3 = x[2+idx];
361b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
362b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
363b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
364b01c7715SBarry Smith           v   += 9;
365b01c7715SBarry Smith         }
366b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
367b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
368b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
369b01c7715SBarry Smith         idiag   += 9;
370b01c7715SBarry Smith         i2      += 3;
371b01c7715SBarry Smith       }
372b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
373efee365bSSatish Balay       ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr);
374b01c7715SBarry Smith     }
375b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
376b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
377b01c7715SBarry Smith       i2    = 0;
378b01c7715SBarry Smith       mdiag = a->idiag+9*a->mbs;
379b01c7715SBarry Smith       for (i=0; i<m; i++) {
380b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
381b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3;
382b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3;
383b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3;
384b01c7715SBarry Smith         mdiag  += 9;
385b01c7715SBarry Smith         i2     += 3;
386b01c7715SBarry Smith       }
387efee365bSSatish Balay       ierr = PetscLogFlops(15*m);CHKERRQ(ierr);
388b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
389d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
390b01c7715SBarry Smith     }
391b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
392b01c7715SBarry Smith       idiag   = a->idiag+9*a->mbs - 9;
393b01c7715SBarry Smith       i2      = 3*m - 3;
394b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
395b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3;
396b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3;
397b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3;
398b01c7715SBarry Smith       idiag -= 9;
399b01c7715SBarry Smith       i2    -= 3;
400b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
401b01c7715SBarry Smith         v     = aa + 9*(diag[i]+1);
402b01c7715SBarry Smith         vi    = aj + diag[i] + 1;
403b01c7715SBarry Smith         nz    = ai[i+1] - diag[i] - 1;
404b01c7715SBarry Smith         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2];
405b01c7715SBarry Smith         while (nz--) {
406b01c7715SBarry Smith           idx  = 3*(*vi++);
407b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx];
408b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
409b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
410b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
411b01c7715SBarry Smith           v   += 9;
412b01c7715SBarry Smith         }
413b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
414b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
415b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
416b01c7715SBarry Smith         idiag   -= 9;
417b01c7715SBarry Smith         i2      -= 3;
418b01c7715SBarry Smith       }
419efee365bSSatish Balay       ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr);
420b01c7715SBarry Smith     }
421b01c7715SBarry Smith   } else {
422634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
423b01c7715SBarry Smith   }
4241ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4251ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
426b01c7715SBarry Smith   PetscFunctionReturn(0);
427b01c7715SBarry Smith }
428b01c7715SBarry Smith 
429b01c7715SBarry Smith #undef __FUNCT__
430b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4"
431c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
432b01c7715SBarry Smith {
433b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
434b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,s1,s2,s3,s4;
435dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
436dd6ea824SBarry Smith   const PetscScalar  *b;
437dfbe8321SBarry Smith   PetscErrorCode     ierr;
438c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
439c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
440b01c7715SBarry Smith 
441b01c7715SBarry Smith   PetscFunctionBegin;
44271f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
443b01c7715SBarry Smith   its = its*lits;
44477431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
445b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
446b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
44771f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
448b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
449b01c7715SBarry Smith 
450b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
451b01c7715SBarry Smith 
452b01c7715SBarry Smith   diag  = a->diag;
453b01c7715SBarry Smith   idiag = a->idiag;
4541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4551ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
456b01c7715SBarry Smith 
457b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
458b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
459b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8]  + b[3]*idiag[12];
460b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9]  + b[3]*idiag[13];
461b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14];
462b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15];
463b01c7715SBarry Smith       i2     = 4;
464b01c7715SBarry Smith       idiag += 16;
465b01c7715SBarry Smith       for (i=1; i<m; i++) {
466b01c7715SBarry Smith 	v     = aa + 16*ai[i];
467b01c7715SBarry Smith 	vi    = aj + ai[i];
468b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
469b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3];
470b01c7715SBarry Smith 	while (nz--) {
471b01c7715SBarry Smith 	  idx  = 4*(*vi++);
472b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
473b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
474b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
475b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
476b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
477b01c7715SBarry Smith 	  v   += 16;
478b01c7715SBarry Smith 	}
479b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
480b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
481b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
482b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
483b01c7715SBarry Smith         idiag   += 16;
484b01c7715SBarry Smith         i2      += 4;
485b01c7715SBarry Smith       }
486b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
487efee365bSSatish Balay       ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr);
488b01c7715SBarry Smith     }
489b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
490b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
491b01c7715SBarry Smith       i2    = 0;
492b01c7715SBarry Smith       mdiag = a->idiag+16*a->mbs;
493b01c7715SBarry Smith       for (i=0; i<m; i++) {
494b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
495b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3  + mdiag[12]*x4;
496b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3  + mdiag[13]*x4;
497b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4;
498b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4;
499b01c7715SBarry Smith         mdiag  += 16;
500b01c7715SBarry Smith         i2     += 4;
501b01c7715SBarry Smith       }
502efee365bSSatish Balay       ierr = PetscLogFlops(28*m);CHKERRQ(ierr);
503b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
504d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
505b01c7715SBarry Smith     }
506b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
507b01c7715SBarry Smith       idiag   = a->idiag+16*a->mbs - 16;
508b01c7715SBarry Smith       i2      = 4*m - 4;
509b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
510b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3  + idiag[12]*x4;
511b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3  + idiag[13]*x4;
512b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4;
513b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4;
514b01c7715SBarry Smith       idiag -= 16;
515b01c7715SBarry Smith       i2    -= 4;
516b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
517b01c7715SBarry Smith 	v     = aa + 16*(diag[i]+1);
518b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
519b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
520b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3];
521b01c7715SBarry Smith 	while (nz--) {
522b01c7715SBarry Smith 	  idx  = 4*(*vi++);
523b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
524b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
525b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
526b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
527b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
528b01c7715SBarry Smith 	  v   += 16;
529b01c7715SBarry Smith 	}
530b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
531b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
532b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
533b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
534b01c7715SBarry Smith         idiag   -= 16;
535b01c7715SBarry Smith         i2      -= 4;
536b01c7715SBarry Smith       }
537efee365bSSatish Balay       ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr);
538b01c7715SBarry Smith     }
539b01c7715SBarry Smith   } else {
540634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
541b01c7715SBarry Smith   }
5421ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5431ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
544b01c7715SBarry Smith   PetscFunctionReturn(0);
545b01c7715SBarry Smith }
546b01c7715SBarry Smith 
547b01c7715SBarry Smith #undef __FUNCT__
548b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5"
549c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
550b01c7715SBarry Smith {
551b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
552b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5;
553dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
554dd6ea824SBarry Smith   const PetscScalar  *b;
555dfbe8321SBarry Smith   PetscErrorCode     ierr;
556c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
557c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
558b01c7715SBarry Smith 
559b01c7715SBarry Smith   PetscFunctionBegin;
56071f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
561b01c7715SBarry Smith   its = its*lits;
56277431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
563b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
564b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
56571f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
566b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
567b01c7715SBarry Smith 
568b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
569b01c7715SBarry Smith 
570b01c7715SBarry Smith   diag  = a->diag;
571b01c7715SBarry Smith   idiag = a->idiag;
5721ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5731ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
574b01c7715SBarry Smith 
575b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
576b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
577b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20];
578b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21];
579b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22];
580b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23];
581b01c7715SBarry Smith       x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24];
582b01c7715SBarry Smith       i2     = 5;
583b01c7715SBarry Smith       idiag += 25;
584b01c7715SBarry Smith       for (i=1; i<m; i++) {
585b01c7715SBarry Smith 	v     = aa + 25*ai[i];
586b01c7715SBarry Smith 	vi    = aj + ai[i];
587b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
588b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4];
589b01c7715SBarry Smith 	while (nz--) {
590b01c7715SBarry Smith 	  idx  = 5*(*vi++);
591b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
592b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
593b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
594b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
595b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
596b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
597b01c7715SBarry Smith 	  v   += 25;
598b01c7715SBarry Smith 	}
599b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
600b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
601b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
602b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
603b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
604b01c7715SBarry Smith         idiag   += 25;
605b01c7715SBarry Smith         i2      += 5;
606b01c7715SBarry Smith       }
607b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
608efee365bSSatish Balay       ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr);
609b01c7715SBarry Smith     }
610b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
611b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
612b01c7715SBarry Smith       i2    = 0;
613b01c7715SBarry Smith       mdiag = a->idiag+25*a->mbs;
614b01c7715SBarry Smith       for (i=0; i<m; i++) {
615b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
616b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5;
617b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5;
618b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5;
619b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5;
620b01c7715SBarry Smith         x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5;
621b01c7715SBarry Smith         mdiag  += 25;
622b01c7715SBarry Smith         i2     += 5;
623b01c7715SBarry Smith       }
624efee365bSSatish Balay       ierr = PetscLogFlops(45*m);CHKERRQ(ierr);
625b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
626d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
627b01c7715SBarry Smith     }
628b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
629b01c7715SBarry Smith       idiag   = a->idiag+25*a->mbs - 25;
630b01c7715SBarry Smith       i2      = 5*m - 5;
631b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
632b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5;
633b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5;
634b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5;
635b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5;
636b01c7715SBarry Smith       x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5;
637b01c7715SBarry Smith       idiag -= 25;
638b01c7715SBarry Smith       i2    -= 5;
639b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
640b01c7715SBarry Smith 	v     = aa + 25*(diag[i]+1);
641b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
642b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
643b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4];
644b01c7715SBarry Smith 	while (nz--) {
645b01c7715SBarry Smith 	  idx  = 5*(*vi++);
646b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
647b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
648b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
649b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
650b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
651b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
652b01c7715SBarry Smith 	  v   += 25;
653b01c7715SBarry Smith 	}
654b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
655b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
656b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
657b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
658b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
659b01c7715SBarry Smith         idiag   -= 25;
660b01c7715SBarry Smith         i2      -= 5;
661b01c7715SBarry Smith       }
662efee365bSSatish Balay       ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr);
663b01c7715SBarry Smith     }
664b01c7715SBarry Smith   } else {
665634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
666b01c7715SBarry Smith   }
6671ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
6681ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
669b01c7715SBarry Smith   PetscFunctionReturn(0);
670b01c7715SBarry Smith }
671b01c7715SBarry Smith 
6726d3beeddSMatthew Knepley #undef __FUNCT__
6736d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6"
6746d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
6756d3beeddSMatthew Knepley {
6766d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
6776d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6;
678dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
679dd6ea824SBarry Smith   const PetscScalar  *b;
6806d3beeddSMatthew Knepley   PetscErrorCode     ierr;
6816d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
6826d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
6836d3beeddSMatthew Knepley 
6846d3beeddSMatthew Knepley   PetscFunctionBegin;
6856d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
6866d3beeddSMatthew Knepley   its = its*lits;
6876d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
6886d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
6896d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
6906d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
6916d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
6926d3beeddSMatthew Knepley 
6936d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
6946d3beeddSMatthew Knepley 
6956d3beeddSMatthew Knepley   diag  = a->diag;
6966d3beeddSMatthew Knepley   idiag = a->idiag;
6976d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
6986d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
6996d3beeddSMatthew Knepley 
7006d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
7016d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
7026d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[6]  + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30];
7036d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[7]  + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31];
7046d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[8]  + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32];
7056d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[9]  + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33];
7066d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34];
7076d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35];
7086d3beeddSMatthew Knepley       i2     = 6;
7096d3beeddSMatthew Knepley       idiag += 36;
7106d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
7116d3beeddSMatthew Knepley         v     = aa + 36*ai[i];
7126d3beeddSMatthew Knepley         vi    = aj + ai[i];
7136d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
7146d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5];
7156d3beeddSMatthew Knepley         while (nz--) {
7166d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7176d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7186d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7196d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7206d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7216d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7226d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7236d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7246d3beeddSMatthew Knepley           v   += 36;
7256d3beeddSMatthew Knepley         }
7266d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7276d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7286d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7296d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7306d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7316d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7326d3beeddSMatthew Knepley         idiag   += 36;
7336d3beeddSMatthew Knepley         i2      += 6;
7346d3beeddSMatthew Knepley       }
7356d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
7366d3beeddSMatthew Knepley       ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr);
7376d3beeddSMatthew Knepley     }
7386d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
7396d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
7406d3beeddSMatthew Knepley       i2    = 0;
7416d3beeddSMatthew Knepley       mdiag = a->idiag+36*a->mbs;
7426d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
7436d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7446d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[6]*x2  + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6;
7456d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2  + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6;
7466d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2  + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6;
7476d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2  + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6;
7486d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6;
7496d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6;
7506d3beeddSMatthew Knepley         mdiag  += 36;
7516d3beeddSMatthew Knepley         i2     += 6;
7526d3beeddSMatthew Knepley       }
7536d3beeddSMatthew Knepley       ierr = PetscLogFlops(60*m);CHKERRQ(ierr);
7546d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
755d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
7566d3beeddSMatthew Knepley     }
7576d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
7586d3beeddSMatthew Knepley       idiag   = a->idiag+36*a->mbs - 36;
7596d3beeddSMatthew Knepley       i2      = 6*m - 6;
7606d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7616d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[6]*x2  + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6;
7626d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[7]*x2  + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6;
7636d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[8]*x2  + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6;
7646d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[9]*x2  + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6;
7656d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6;
7666d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6;
7676d3beeddSMatthew Knepley       idiag -= 36;
7686d3beeddSMatthew Knepley       i2    -= 6;
7696d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
7706d3beeddSMatthew Knepley         v     = aa + 36*(diag[i]+1);
7716d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
7726d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
7736d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5];
7746d3beeddSMatthew Knepley         while (nz--) {
7756d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7766d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7776d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7786d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7796d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7806d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7816d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7826d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7836d3beeddSMatthew Knepley           v   += 36;
7846d3beeddSMatthew Knepley         }
7856d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7866d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7876d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7886d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7896d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7906d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7916d3beeddSMatthew Knepley         idiag   -= 36;
7926d3beeddSMatthew Knepley         i2      -= 6;
7936d3beeddSMatthew Knepley       }
7946d3beeddSMatthew Knepley       ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr);
7956d3beeddSMatthew Knepley     }
7966d3beeddSMatthew Knepley   } else {
7976d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
7986d3beeddSMatthew Knepley   }
7996d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
8006d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8016d3beeddSMatthew Knepley   PetscFunctionReturn(0);
8026d3beeddSMatthew Knepley }
8036d3beeddSMatthew Knepley 
8046d3beeddSMatthew Knepley #undef __FUNCT__
8056d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7"
8066d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
8076d3beeddSMatthew Knepley {
8086d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
8096d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7;
810dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
811dd6ea824SBarry Smith   const PetscScalar  *b;
8126d3beeddSMatthew Knepley   PetscErrorCode     ierr;
8136d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
8146d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
8156d3beeddSMatthew Knepley 
8166d3beeddSMatthew Knepley   PetscFunctionBegin;
8176d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
8186d3beeddSMatthew Knepley   its = its*lits;
8196d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
8206d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
8216d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
8226d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
8236d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
8246d3beeddSMatthew Knepley 
8256d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
8266d3beeddSMatthew Knepley 
8276d3beeddSMatthew Knepley   diag  = a->diag;
8286d3beeddSMatthew Knepley   idiag = a->idiag;
8296d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
8306d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8316d3beeddSMatthew Knepley 
8326d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
8336d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
8346d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[7]  + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42];
8356d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[8]  + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43];
8366d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[9]  + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44];
8376d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45];
8386d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46];
8396d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47];
8406d3beeddSMatthew Knepley       x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48];
8416d3beeddSMatthew Knepley       i2     = 7;
8426d3beeddSMatthew Knepley       idiag += 49;
8436d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
8446d3beeddSMatthew Knepley         v     = aa + 49*ai[i];
8456d3beeddSMatthew Knepley         vi    = aj + ai[i];
8466d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
8476d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6];
8486d3beeddSMatthew Knepley         while (nz--) {
8496d3beeddSMatthew Knepley           idx  = 7*(*vi++);
8506d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
8516d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
8526d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
8536d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
8546d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
8556d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
8566d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
8576d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
8586d3beeddSMatthew Knepley           v   += 49;
8596d3beeddSMatthew Knepley         }
8606d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
8616d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
8626d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
8636d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
8646d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
8656d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
8666d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
8676d3beeddSMatthew Knepley         idiag   += 49;
8686d3beeddSMatthew Knepley         i2      += 7;
8696d3beeddSMatthew Knepley       }
8706d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
8716d3beeddSMatthew Knepley       ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr);
8726d3beeddSMatthew Knepley     }
8736d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
8746d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
8756d3beeddSMatthew Knepley       i2    = 0;
8766d3beeddSMatthew Knepley       mdiag = a->idiag+49*a->mbs;
8776d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
8786d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8796d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[7]*x2  + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7;
8806d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2  + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7;
8816d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2  + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7;
8826d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7;
8836d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7;
8846d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7;
8856d3beeddSMatthew Knepley         x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7;
8866d3beeddSMatthew Knepley         mdiag  += 36;
8876d3beeddSMatthew Knepley         i2     += 6;
8886d3beeddSMatthew Knepley       }
8896d3beeddSMatthew Knepley       ierr = PetscLogFlops(93*m);CHKERRQ(ierr);
8906d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
891d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
8926d3beeddSMatthew Knepley     }
8936d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
8946d3beeddSMatthew Knepley       idiag   = a->idiag+49*a->mbs - 49;
8956d3beeddSMatthew Knepley       i2      = 7*m - 7;
8966d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8976d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[7]*x2  + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7;
8986d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[8]*x2  + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7;
8996d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[9]*x2  + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7;
9006d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7;
9016d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7;
9026d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7;
9036d3beeddSMatthew Knepley       x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7;
9046d3beeddSMatthew Knepley       idiag -= 49;
9056d3beeddSMatthew Knepley       i2    -= 7;
9066d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
9076d3beeddSMatthew Knepley         v     = aa + 49*(diag[i]+1);
9086d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
9096d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
9106d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6];
9116d3beeddSMatthew Knepley         while (nz--) {
9126d3beeddSMatthew Knepley           idx  = 7*(*vi++);
9136d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
9146d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
9156d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
9166d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
9176d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
9186d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
9196d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
9206d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
9216d3beeddSMatthew Knepley           v   += 49;
9226d3beeddSMatthew Knepley         }
9236d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
9246d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
9256d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
9266d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
9276d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
9286d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
9296d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
9306d3beeddSMatthew Knepley         idiag   -= 49;
9316d3beeddSMatthew Knepley         i2      -= 7;
9326d3beeddSMatthew Knepley       }
9336d3beeddSMatthew Knepley       ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr);
9346d3beeddSMatthew Knepley     }
9356d3beeddSMatthew Knepley   } else {
9366d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
9376d3beeddSMatthew Knepley   }
9386d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
9396d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
9406d3beeddSMatthew Knepley   PetscFunctionReturn(0);
9416d3beeddSMatthew Knepley }
9426d3beeddSMatthew Knepley 
943af674e45SBarry Smith /*
94481824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
945af674e45SBarry Smith */
946af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
947af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
948af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
949af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
950af674e45SBarry Smith #endif
951af674e45SBarry Smith 
9529c8c1041SBarry Smith EXTERN_C_BEGIN
953af674e45SBarry Smith #undef __FUNCT__
954af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_"
955be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
956af674e45SBarry Smith {
957af674e45SBarry Smith   Mat               A = *AA;
958af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
959c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
960c1ac3661SBarry Smith   PetscInt          *ai=a->i,*ailen=a->ilen;
96117ec6a02SBarry Smith   PetscInt          *aj=a->j,stepval,lastcol = -1;
962f15d580aSBarry Smith   const PetscScalar *value = v;
9634bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
964af674e45SBarry Smith 
965af674e45SBarry Smith   PetscFunctionBegin;
966d0f46423SBarry Smith   if (A->rmap->bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
967af674e45SBarry Smith   stepval = (n-1)*4;
968af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
969af674e45SBarry Smith     row  = im[k];
970af674e45SBarry Smith     rp   = aj + ai[row];
971af674e45SBarry Smith     ap   = aa + 16*ai[row];
972af674e45SBarry Smith     nrow = ailen[row];
973af674e45SBarry Smith     low  = 0;
97417ec6a02SBarry Smith     high = nrow;
975af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
976af674e45SBarry Smith       col = in[l];
97717ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
97817ec6a02SBarry Smith       lastcol = col;
9791e3347e8SBarry Smith       value = v + k*(stepval+4 + l)*4;
980af674e45SBarry Smith       while (high-low > 7) {
981af674e45SBarry Smith         t = (low+high)/2;
982af674e45SBarry Smith         if (rp[t] > col) high = t;
983af674e45SBarry Smith         else             low  = t;
984af674e45SBarry Smith       }
985af674e45SBarry Smith       for (i=low; i<high; i++) {
986af674e45SBarry Smith         if (rp[i] > col) break;
987af674e45SBarry Smith         if (rp[i] == col) {
988af674e45SBarry Smith           bap  = ap +  16*i;
989af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
990af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
991af674e45SBarry Smith               bap[jj] += *value++;
992af674e45SBarry Smith             }
993af674e45SBarry Smith           }
994af674e45SBarry Smith           goto noinsert2;
995af674e45SBarry Smith         }
996af674e45SBarry Smith       }
997af674e45SBarry Smith       N = nrow++ - 1;
99817ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
999af674e45SBarry Smith       /* shift up all the later entries in this row */
1000af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1001af674e45SBarry Smith         rp[ii+1] = rp[ii];
1002a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1003af674e45SBarry Smith       }
1004af674e45SBarry Smith       if (N >= i) {
1005a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1006af674e45SBarry Smith       }
1007af674e45SBarry Smith       rp[i] = col;
1008af674e45SBarry Smith       bap   = ap +  16*i;
1009af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
1010af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
1011af674e45SBarry Smith           bap[jj] = *value++;
1012af674e45SBarry Smith         }
1013af674e45SBarry Smith       }
1014af674e45SBarry Smith       noinsert2:;
1015af674e45SBarry Smith       low = i;
1016af674e45SBarry Smith     }
1017af674e45SBarry Smith     ailen[row] = nrow;
1018af674e45SBarry Smith   }
1019be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1020af674e45SBarry Smith }
10219c8c1041SBarry Smith EXTERN_C_END
1022af674e45SBarry Smith 
1023af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1024af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
1025af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1026af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
1027af674e45SBarry Smith #endif
1028af674e45SBarry Smith 
10299c8c1041SBarry Smith EXTERN_C_BEGIN
1030af674e45SBarry Smith #undef __FUNCT__
1031af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_"
1032be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
1033af674e45SBarry Smith {
1034af674e45SBarry Smith   Mat         A = *AA;
1035af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1036c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm;
1037c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
1038c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
103917ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
1040af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
1041af674e45SBarry Smith 
1042af674e45SBarry Smith   PetscFunctionBegin;
1043af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1044af674e45SBarry Smith     row  = im[k]; brow = row/4;
1045af674e45SBarry Smith     rp   = aj + ai[brow];
1046af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1047af674e45SBarry Smith     nrow = ailen[brow];
1048af674e45SBarry Smith     low  = 0;
104917ec6a02SBarry Smith     high = nrow;
1050af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1051af674e45SBarry Smith       col = in[l]; bcol = col/4;
1052af674e45SBarry Smith       ridx = row % 4; cidx = col % 4;
1053af674e45SBarry Smith       value = v[l + k*n];
105417ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
105517ec6a02SBarry Smith       lastcol = col;
1056af674e45SBarry Smith       while (high-low > 7) {
1057af674e45SBarry Smith         t = (low+high)/2;
1058af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1059af674e45SBarry Smith         else              low  = t;
1060af674e45SBarry Smith       }
1061af674e45SBarry Smith       for (i=low; i<high; i++) {
1062af674e45SBarry Smith         if (rp[i] > bcol) break;
1063af674e45SBarry Smith         if (rp[i] == bcol) {
1064af674e45SBarry Smith           bap  = ap +  16*i + 4*cidx + ridx;
1065af674e45SBarry Smith           *bap += value;
1066af674e45SBarry Smith           goto noinsert1;
1067af674e45SBarry Smith         }
1068af674e45SBarry Smith       }
1069af674e45SBarry Smith       N = nrow++ - 1;
107017ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1071af674e45SBarry Smith       /* shift up all the later entries in this row */
1072af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1073af674e45SBarry Smith         rp[ii+1] = rp[ii];
1074a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1075af674e45SBarry Smith       }
1076af674e45SBarry Smith       if (N>=i) {
1077a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1078af674e45SBarry Smith       }
1079af674e45SBarry Smith       rp[i]                    = bcol;
1080af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1081af674e45SBarry Smith       noinsert1:;
1082af674e45SBarry Smith       low = i;
1083af674e45SBarry Smith     }
1084af674e45SBarry Smith     ailen[brow] = nrow;
1085af674e45SBarry Smith   }
1086be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1087af674e45SBarry Smith }
10889c8c1041SBarry Smith EXTERN_C_END
1089af674e45SBarry Smith 
1090be5855fcSBarry Smith /*
1091be5855fcSBarry Smith      Checks for missing diagonals
1092be5855fcSBarry Smith */
10934a2ae208SSatish Balay #undef __FUNCT__
10944a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ"
10952af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d)
1096be5855fcSBarry Smith {
1097be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10986849ba73SBarry Smith   PetscErrorCode ierr;
1099c1ac3661SBarry Smith   PetscInt       *diag,*jj = a->j,i;
1100be5855fcSBarry Smith 
1101be5855fcSBarry Smith   PetscFunctionBegin;
1102c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
11032af78befSBarry Smith   *missing = PETSC_FALSE;
1104883fce79SBarry Smith   diag     = a->diag;
11050e8e8aceSBarry Smith   for (i=0; i<a->mbs; i++) {
1106be5855fcSBarry Smith     if (jj[diag[i]] != i) {
11072af78befSBarry Smith       *missing  = PETSC_TRUE;
11082af78befSBarry Smith       if (d) *d = i;
1109be5855fcSBarry Smith     }
1110be5855fcSBarry Smith   }
1111be5855fcSBarry Smith   PetscFunctionReturn(0);
1112be5855fcSBarry Smith }
1113be5855fcSBarry Smith 
11144a2ae208SSatish Balay #undef __FUNCT__
11154a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ"
1116dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1117de6a44a3SBarry Smith {
1118de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11196849ba73SBarry Smith   PetscErrorCode ierr;
112009f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1121de6a44a3SBarry Smith 
11223a40ed3dSBarry Smith   PetscFunctionBegin;
112309f38230SBarry Smith   if (!a->diag) {
112409f38230SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
112509f38230SBarry Smith   }
11267fc0212eSBarry Smith   for (i=0; i<m; i++) {
112709f38230SBarry Smith     a->diag[i] = a->i[i+1];
1128de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1129de6a44a3SBarry Smith       if (a->j[j] == i) {
113009f38230SBarry Smith         a->diag[i] = j;
1131de6a44a3SBarry Smith         break;
1132de6a44a3SBarry Smith       }
1133de6a44a3SBarry Smith     }
1134de6a44a3SBarry Smith   }
11353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1136de6a44a3SBarry Smith }
11372593348eSBarry Smith 
11382593348eSBarry Smith 
1139690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**);
11403b2fbd54SBarry Smith 
11414a2ae208SSatish Balay #undef __FUNCT__
11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ"
11438f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
11443b2fbd54SBarry Smith {
11453b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1146dfbe8321SBarry Smith   PetscErrorCode ierr;
1147d0f46423SBarry Smith   PetscInt       i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs,nbs = 1,k,l,cnt;
11488f7157efSSatish Balay   PetscInt       *tia, *tja;
11493b2fbd54SBarry Smith 
11503a40ed3dSBarry Smith   PetscFunctionBegin;
11513b2fbd54SBarry Smith   *nn = n;
11523a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
11533b2fbd54SBarry Smith   if (symmetric) {
11548f7157efSSatish Balay     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr);
11553b2fbd54SBarry Smith   } else {
11568f7157efSSatish Balay     tia = a->i; tja = a->j;
11573b2fbd54SBarry Smith   }
11583b2fbd54SBarry Smith 
1159ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1160ecc77c7aSBarry Smith     (*nn) *= bs;
1161ecc77c7aSBarry Smith     nbs    = bs;
11628f7157efSSatish Balay     /* malloc & create the natural set of indices */
1163ecc77c7aSBarry Smith     ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr);
11649985e31cSBarry Smith     if (n) {
1165ecc77c7aSBarry Smith       (*ia)[0] = 0;
1166ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1167ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1168ecc77c7aSBarry Smith       }
11699985e31cSBarry Smith     }
1170ecc77c7aSBarry Smith 
1171ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1172ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1173ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1174ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
11758f7157efSSatish Balay       }
11768f7157efSSatish Balay     }
11779985e31cSBarry Smith     if (n) {
1178ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
11799985e31cSBarry Smith     }
1180ecc77c7aSBarry Smith 
11819985e31cSBarry Smith     if (ja) {
11829985e31cSBarry Smith       ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr);
11839985e31cSBarry Smith       cnt = 0;
11849985e31cSBarry Smith       for (i=0; i<n; i++) {
11859985e31cSBarry Smith         for (j=0; j<bs; j++) {
11869985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
11879985e31cSBarry Smith             for (l=0; l<bs; l++) {
11889985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
11899985e31cSBarry Smith 	    }
11909985e31cSBarry Smith           }
11919985e31cSBarry Smith         }
11929985e31cSBarry Smith       }
11939985e31cSBarry Smith     }
11949985e31cSBarry Smith 
1195ecc77c7aSBarry Smith     n     *= bs;
1196ecc77c7aSBarry Smith     nz *= bs*bs;
11978f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
11988f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
11998f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
12008f7157efSSatish Balay     }
12018f7157efSSatish Balay   } else {
12028f7157efSSatish Balay     *ia = tia;
1203ecc77c7aSBarry Smith     if (ja) *ja = tja;
12048f7157efSSatish Balay   }
12058f7157efSSatish Balay   if (oshift == 1) {
1206ecc77c7aSBarry Smith     for (i=0; i<n+nbs; i++) (*ia)[i]++;
1207ecc77c7aSBarry Smith     if (ja) for (i=0; i<nz; i++) (*ja)[i]++;
12088f7157efSSatish Balay   }
12093a40ed3dSBarry Smith   PetscFunctionReturn(0);
12103b2fbd54SBarry Smith }
12113b2fbd54SBarry Smith 
12124a2ae208SSatish Balay #undef __FUNCT__
12134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ"
12148f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
12153b2fbd54SBarry Smith {
12163b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
12176849ba73SBarry Smith   PetscErrorCode ierr;
12188f7157efSSatish Balay   PetscInt       i,n = a->mbs,nz = a->i[n];
12193b2fbd54SBarry Smith 
12203a40ed3dSBarry Smith   PetscFunctionBegin;
12213a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1222d0f46423SBarry Smith   if (!blockcompressed && A->rmap->bs > 1) {
1223ecc77c7aSBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
12249985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12258f7157efSSatish Balay   } else if (symmetric) {
1226606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
12279985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12288f7157efSSatish Balay   } else if (oshift == 1) { /* blockcompressed */
12293b2fbd54SBarry Smith     for (i=0; i<n+1; i++) a->i[i]--;
12309985e31cSBarry Smith     if (ja) {for (i=0; i<nz; i++) a->j[i]--;}
12313b2fbd54SBarry Smith   }
12323a40ed3dSBarry Smith   PetscFunctionReturn(0);
12333b2fbd54SBarry Smith }
12343b2fbd54SBarry Smith 
12354a2ae208SSatish Balay #undef __FUNCT__
12364a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ"
1237dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
12382d61bbb3SSatish Balay {
12392d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1240dfbe8321SBarry Smith   PetscErrorCode ierr;
12412d61bbb3SSatish Balay 
1242433994e6SBarry Smith   PetscFunctionBegin;
1243aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1244d0f46423SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz);
12452d61bbb3SSatish Balay #endif
1246e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
1247c38d4ed2SBarry Smith   if (a->row) {
1248c38d4ed2SBarry Smith     ierr = ISDestroy(a->row);CHKERRQ(ierr);
1249c38d4ed2SBarry Smith   }
1250c38d4ed2SBarry Smith   if (a->col) {
1251c38d4ed2SBarry Smith     ierr = ISDestroy(a->col);CHKERRQ(ierr);
1252c38d4ed2SBarry Smith   }
125305b42c5fSBarry Smith   ierr = PetscFree(a->diag);CHKERRQ(ierr);
125405b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
125505b42c5fSBarry Smith   ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);
125605b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
125705b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1258e51c0b9cSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
125905b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
126005b42c5fSBarry Smith   ierr = PetscFree(a->xtoy);CHKERRQ(ierr);
126173e7a558SHong Zhang   if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);}
1262c4319e64SHong Zhang 
126370e08fbdSBarry Smith   if (a->sbaijMat) {ierr = MatDestroy(a->sbaijMat);CHKERRQ(ierr);}
1264606d414cSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
1265901853e0SKris Buschelman 
1266dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
126743516a2dSKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr);
1268901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1269901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1270901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
1271901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
1272901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr);
1273901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1274725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
12752d61bbb3SSatish Balay   PetscFunctionReturn(0);
12762d61bbb3SSatish Balay }
12772d61bbb3SSatish Balay 
12784a2ae208SSatish Balay #undef __FUNCT__
12794a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ"
12804e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg)
12812d61bbb3SSatish Balay {
12822d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
128363ba0a88SBarry Smith   PetscErrorCode ierr;
12842d61bbb3SSatish Balay 
12852d61bbb3SSatish Balay   PetscFunctionBegin;
1286aa275fccSKris Buschelman   switch (op) {
1287aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
12884e0d8c25SBarry Smith     a->roworiented    = flg;
1289aa275fccSKris Buschelman     break;
1290aa275fccSKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
12914e0d8c25SBarry Smith     a->keepzeroedrows = flg;
1292aa275fccSKris Buschelman     break;
1293512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1294512a5fc5SBarry Smith     a->nonew          = (flg ? 0 : 1);
1295aa275fccSKris Buschelman     break;
1296aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12974e0d8c25SBarry Smith     a->nonew          = (flg ? -1 : 0);
1298aa275fccSKris Buschelman     break;
1299aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
13004e0d8c25SBarry Smith     a->nonew          = (flg ? -2 : 0);
1301aa275fccSKris Buschelman     break;
13024e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1303aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1304aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1305290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1306aa275fccSKris Buschelman     break;
130777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
130877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13099a4540c5SBarry Smith   case MAT_HERMITIAN:
13109a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1311290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
131277e54ba9SKris Buschelman     break;
1313aa275fccSKris Buschelman   default:
1314ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
13152d61bbb3SSatish Balay   }
13162d61bbb3SSatish Balay   PetscFunctionReturn(0);
13172d61bbb3SSatish Balay }
13182d61bbb3SSatish Balay 
13194a2ae208SSatish Balay #undef __FUNCT__
13204a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ"
1321c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13222d61bbb3SSatish Balay {
13232d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
13246849ba73SBarry Smith   PetscErrorCode ierr;
1325c1ac3661SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
13263f1db9ecSBarry Smith   MatScalar      *aa,*aa_i;
132787828ca2SBarry Smith   PetscScalar    *v_i;
13282d61bbb3SSatish Balay 
13292d61bbb3SSatish Balay   PetscFunctionBegin;
1330d0f46423SBarry Smith   bs  = A->rmap->bs;
13312d61bbb3SSatish Balay   ai  = a->i;
13322d61bbb3SSatish Balay   aj  = a->j;
13332d61bbb3SSatish Balay   aa  = a->a;
13342d61bbb3SSatish Balay   bs2 = a->bs2;
13352d61bbb3SSatish Balay 
1336d0f46423SBarry Smith   if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
13372d61bbb3SSatish Balay 
13382d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
13392d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
13402d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
13412d61bbb3SSatish Balay   *nz = bs*M;
13422d61bbb3SSatish Balay 
13432d61bbb3SSatish Balay   if (v) {
13442d61bbb3SSatish Balay     *v = 0;
13452d61bbb3SSatish Balay     if (*nz) {
134687828ca2SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr);
13472d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13482d61bbb3SSatish Balay         v_i  = *v + i*bs;
13492d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
13502d61bbb3SSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
13512d61bbb3SSatish Balay       }
13522d61bbb3SSatish Balay     }
13532d61bbb3SSatish Balay   }
13542d61bbb3SSatish Balay 
13552d61bbb3SSatish Balay   if (idx) {
13562d61bbb3SSatish Balay     *idx = 0;
13572d61bbb3SSatish Balay     if (*nz) {
1358c1ac3661SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr);
13592d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13602d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13612d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
13622d61bbb3SSatish Balay         for (j=0; j<bs; j++) {idx_i[j] = itmp++;}
13632d61bbb3SSatish Balay       }
13642d61bbb3SSatish Balay     }
13652d61bbb3SSatish Balay   }
13662d61bbb3SSatish Balay   PetscFunctionReturn(0);
13672d61bbb3SSatish Balay }
13682d61bbb3SSatish Balay 
13694a2ae208SSatish Balay #undef __FUNCT__
13704a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ"
1371c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13722d61bbb3SSatish Balay {
1373dfbe8321SBarry Smith   PetscErrorCode ierr;
1374606d414cSSatish Balay 
13752d61bbb3SSatish Balay   PetscFunctionBegin;
137605b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
137705b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
13782d61bbb3SSatish Balay   PetscFunctionReturn(0);
13792d61bbb3SSatish Balay }
13802d61bbb3SSatish Balay 
13814a2ae208SSatish Balay #undef __FUNCT__
13824a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ"
1383fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
13842d61bbb3SSatish Balay {
13852d61bbb3SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data;
13862d61bbb3SSatish Balay   Mat            C;
13876849ba73SBarry Smith   PetscErrorCode ierr;
1388d0f46423SBarry Smith   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
1389c1ac3661SBarry Smith   PetscInt       *rows,*cols,bs2=a->bs2;
1390dd6ea824SBarry Smith   MatScalar      *array;
13912d61bbb3SSatish Balay 
13922d61bbb3SSatish Balay   PetscFunctionBegin;
1393e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1394fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *B) {
1395c1ac3661SBarry Smith     ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr);
1396c1ac3661SBarry Smith     ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr);
13972d61bbb3SSatish Balay 
13982d61bbb3SSatish Balay     for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1;
13997adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr);
1400d0f46423SBarry Smith     ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr);
14017adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
1402ab93d7beSBarry Smith     ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr);
1403606d414cSSatish Balay     ierr = PetscFree(col);CHKERRQ(ierr);
1404fc4dec0aSBarry Smith   } else {
1405fc4dec0aSBarry Smith     C = *B;
1406fc4dec0aSBarry Smith   }
1407fc4dec0aSBarry Smith 
1408fc4dec0aSBarry Smith   array = a->a;
1409c1ac3661SBarry Smith   ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr);
14102d61bbb3SSatish Balay   cols = rows + bs;
14112d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
14122d61bbb3SSatish Balay     cols[0] = i*bs;
14132d61bbb3SSatish Balay     for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1;
14142d61bbb3SSatish Balay     len = ai[i+1] - ai[i];
14152d61bbb3SSatish Balay     for (j=0; j<len; j++) {
14162d61bbb3SSatish Balay       rows[0] = (*aj++)*bs;
14172d61bbb3SSatish Balay       for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1;
14182d61bbb3SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr);
14192d61bbb3SSatish Balay       array += bs2;
14202d61bbb3SSatish Balay     }
14212d61bbb3SSatish Balay   }
1422606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
14232d61bbb3SSatish Balay 
14242d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14252d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14262d61bbb3SSatish Balay 
1427815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
14282d61bbb3SSatish Balay     *B = C;
14292d61bbb3SSatish Balay   } else {
1430273d9f13SBarry Smith     ierr = MatHeaderCopy(A,C);CHKERRQ(ierr);
14312d61bbb3SSatish Balay   }
14322d61bbb3SSatish Balay   PetscFunctionReturn(0);
14332d61bbb3SSatish Balay }
14342d61bbb3SSatish Balay 
14354a2ae208SSatish Balay #undef __FUNCT__
14364a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary"
14376849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
14382593348eSBarry Smith {
1439b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14406849ba73SBarry Smith   PetscErrorCode ierr;
1441d0f46423SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2;
1442b24ad042SBarry Smith   int            fd;
144387828ca2SBarry Smith   PetscScalar    *aa;
1444ce6f0cecSBarry Smith   FILE           *file;
14452593348eSBarry Smith 
14463a40ed3dSBarry Smith   PetscFunctionBegin;
1447b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1448d0f46423SBarry Smith   ierr        = PetscMalloc((4+A->rmap->N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
1449552e946dSBarry Smith   col_lens[0] = MAT_FILE_COOKIE;
14503b2fbd54SBarry Smith 
1451d0f46423SBarry Smith   col_lens[1] = A->rmap->N;
1452d0f46423SBarry Smith   col_lens[2] = A->cmap->n;
14537e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
14542593348eSBarry Smith 
14552593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1456b6490206SBarry Smith   count = 0;
1457b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1458b6490206SBarry Smith     for (j=0; j<bs; j++) {
1459b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1460b6490206SBarry Smith     }
14612593348eSBarry Smith   }
1462d0f46423SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1463606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
14642593348eSBarry Smith 
14652593348eSBarry Smith   /* store column indices (zero start index) */
1466c1ac3661SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr);
1467b6490206SBarry Smith   count = 0;
1468b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1469b6490206SBarry Smith     for (j=0; j<bs; j++) {
1470b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1471b6490206SBarry Smith         for (l=0; l<bs; l++) {
1472b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
14732593348eSBarry Smith         }
14742593348eSBarry Smith       }
1475b6490206SBarry Smith     }
1476b6490206SBarry Smith   }
14776f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1478606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
14792593348eSBarry Smith 
14802593348eSBarry Smith   /* store nonzero values */
148187828ca2SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
1482b6490206SBarry Smith   count = 0;
1483b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1484b6490206SBarry Smith     for (j=0; j<bs; j++) {
1485b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1486b6490206SBarry Smith         for (l=0; l<bs; l++) {
14877e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1488b6490206SBarry Smith         }
1489b6490206SBarry Smith       }
1490b6490206SBarry Smith     }
1491b6490206SBarry Smith   }
14926f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1493606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1494ce6f0cecSBarry Smith 
1495b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1496ce6f0cecSBarry Smith   if (file) {
1497d0f46423SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs);
1498ce6f0cecSBarry Smith   }
14993a40ed3dSBarry Smith   PetscFunctionReturn(0);
15002593348eSBarry Smith }
15012593348eSBarry Smith 
15024a2ae208SSatish Balay #undef __FUNCT__
15034a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII"
15046849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
15052593348eSBarry Smith {
1506b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1507dfbe8321SBarry Smith   PetscErrorCode    ierr;
1508d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
1509f3ef73ceSBarry Smith   PetscViewerFormat format;
15102593348eSBarry Smith 
15113a40ed3dSBarry Smith   PetscFunctionBegin;
1512b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1513456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
151477431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1515fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1516bcd9e38bSBarry Smith     Mat aij;
1517ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1518bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
1519bcd9e38bSBarry Smith     ierr = MatDestroy(aij);CHKERRQ(ierr);
152004929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
152104929863SHong Zhang      PetscFunctionReturn(0);
1522fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1523b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
152444cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
152544cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
152677431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
152744cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
152844cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1529aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15300e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1531a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l,
15320e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15330e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1534a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l,
15350e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15360e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1537a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15380ef38995SBarry Smith             }
153944cd7ae7SLois Curfman McInnes #else
15400ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
1541a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
15420ef38995SBarry Smith             }
154344cd7ae7SLois Curfman McInnes #endif
154444cd7ae7SLois Curfman McInnes           }
154544cd7ae7SLois Curfman McInnes         }
1546b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
154744cd7ae7SLois Curfman McInnes       }
154844cd7ae7SLois Curfman McInnes     }
1549b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
15500ef38995SBarry Smith   } else {
1551b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
1552b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1553b6490206SBarry Smith       for (j=0; j<bs; j++) {
155477431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1555b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1556b6490206SBarry Smith           for (l=0; l<bs; l++) {
1557aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15580e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
1559a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
15600e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15610e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
1562a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
15630e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15640ef38995SBarry Smith             } else {
1565a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
156688685aaeSLois Curfman McInnes             }
156788685aaeSLois Curfman McInnes #else
1568a83599f4SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
156988685aaeSLois Curfman McInnes #endif
15702593348eSBarry Smith           }
15712593348eSBarry Smith         }
1572b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
15732593348eSBarry Smith       }
15742593348eSBarry Smith     }
1575b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
1576b6490206SBarry Smith   }
1577b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15783a40ed3dSBarry Smith   PetscFunctionReturn(0);
15792593348eSBarry Smith }
15802593348eSBarry Smith 
15814a2ae208SSatish Balay #undef __FUNCT__
15824a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom"
15836849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
15843270192aSSatish Balay {
158577ed5343SBarry Smith   Mat            A = (Mat) Aa;
15863270192aSSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data;
15876849ba73SBarry Smith   PetscErrorCode ierr;
1588d0f46423SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
15890e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
15903f1db9ecSBarry Smith   MatScalar      *aa;
1591b0a32e0cSBarry Smith   PetscViewer    viewer;
15923270192aSSatish Balay 
15933a40ed3dSBarry Smith   PetscFunctionBegin;
15943270192aSSatish Balay 
1595b65db4caSBarry Smith   /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/
159677ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
159777ed5343SBarry Smith 
1598b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
159977ed5343SBarry Smith 
16003270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1601b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
16023270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16033270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1604d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16053270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16063270192aSSatish Balay       aa = a->a + j*bs2;
16073270192aSSatish Balay       for (k=0; k<bs; k++) {
16083270192aSSatish Balay         for (l=0; l<bs; l++) {
16090e6d2581SBarry Smith           if (PetscRealPart(*aa++) >=  0.) continue;
1610b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16113270192aSSatish Balay         }
16123270192aSSatish Balay       }
16133270192aSSatish Balay     }
16143270192aSSatish Balay   }
1615b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
16163270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16173270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1618d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16193270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16203270192aSSatish Balay       aa = a->a + j*bs2;
16213270192aSSatish Balay       for (k=0; k<bs; k++) {
16223270192aSSatish Balay         for (l=0; l<bs; l++) {
16230e6d2581SBarry Smith           if (PetscRealPart(*aa++) != 0.) continue;
1624b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16253270192aSSatish Balay         }
16263270192aSSatish Balay       }
16273270192aSSatish Balay     }
16283270192aSSatish Balay   }
16293270192aSSatish Balay 
1630b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
16313270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16323270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1633d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16343270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16353270192aSSatish Balay       aa = a->a + j*bs2;
16363270192aSSatish Balay       for (k=0; k<bs; k++) {
16373270192aSSatish Balay         for (l=0; l<bs; l++) {
16380e6d2581SBarry Smith           if (PetscRealPart(*aa++) <= 0.) continue;
1639b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16403270192aSSatish Balay         }
16413270192aSSatish Balay       }
16423270192aSSatish Balay     }
16433270192aSSatish Balay   }
164477ed5343SBarry Smith   PetscFunctionReturn(0);
164577ed5343SBarry Smith }
16463270192aSSatish Balay 
16474a2ae208SSatish Balay #undef __FUNCT__
16484a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw"
16496849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
165077ed5343SBarry Smith {
1651dfbe8321SBarry Smith   PetscErrorCode ierr;
16520e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1653b0a32e0cSBarry Smith   PetscDraw      draw;
165477ed5343SBarry Smith   PetscTruth     isnull;
16553270192aSSatish Balay 
165677ed5343SBarry Smith   PetscFunctionBegin;
165777ed5343SBarry Smith 
1658b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1659b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
166077ed5343SBarry Smith 
166177ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1662d0f46423SBarry Smith   xr  = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
166377ed5343SBarry Smith   xr += w;    yr += h;  xl = -w;     yl = -h;
1664b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1665b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
166677ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
16673a40ed3dSBarry Smith   PetscFunctionReturn(0);
16683270192aSSatish Balay }
16693270192aSSatish Balay 
16704a2ae208SSatish Balay #undef __FUNCT__
16714a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ"
1672dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
16732593348eSBarry Smith {
1674dfbe8321SBarry Smith   PetscErrorCode ierr;
167532077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw;
16762593348eSBarry Smith 
16773a40ed3dSBarry Smith   PetscFunctionBegin;
167832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1679fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1680fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
168132077d6dSBarry Smith   if (iascii){
16823a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
16830f5bd95cSBarry Smith   } else if (isbinary) {
16843a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
16850f5bd95cSBarry Smith   } else if (isdraw) {
16863a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
16875cd90555SBarry Smith   } else {
1688a5e6ed63SBarry Smith     Mat B;
1689ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1690a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
1691a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
16922593348eSBarry Smith   }
16933a40ed3dSBarry Smith   PetscFunctionReturn(0);
16942593348eSBarry Smith }
1695b6490206SBarry Smith 
1696cd0e1443SSatish Balay 
16974a2ae208SSatish Balay #undef __FUNCT__
16984a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ"
1699c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1700cd0e1443SSatish Balay {
1701cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1702c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1703c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1704d0f46423SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
170597e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1706cd0e1443SSatish Balay 
17073a40ed3dSBarry Smith   PetscFunctionBegin;
17082d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1709cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
171097e567efSBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1711d0f46423SBarry Smith     if (row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
17122d61bbb3SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
17132c3acbe9SBarry Smith     nrow = ailen[brow];
17142d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
171597e567efSBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1716d0f46423SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
17172d61bbb3SSatish Balay       col  = in[l] ;
17182d61bbb3SSatish Balay       bcol = col/bs;
17192d61bbb3SSatish Balay       cidx = col%bs;
17202d61bbb3SSatish Balay       ridx = row%bs;
17212d61bbb3SSatish Balay       high = nrow;
17222d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17232d61bbb3SSatish Balay       while (high-low > 5) {
1724cd0e1443SSatish Balay         t = (low+high)/2;
1725cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1726cd0e1443SSatish Balay         else             low  = t;
1727cd0e1443SSatish Balay       }
1728cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1729cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1730cd0e1443SSatish Balay         if (rp[i] == bcol) {
17312d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17322d61bbb3SSatish Balay           goto finished;
1733cd0e1443SSatish Balay         }
1734cd0e1443SSatish Balay       }
173597e567efSBarry Smith       *v++ = 0.0;
17362d61bbb3SSatish Balay       finished:;
1737cd0e1443SSatish Balay     }
1738cd0e1443SSatish Balay   }
17393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1740cd0e1443SSatish Balay }
1741cd0e1443SSatish Balay 
174297e5c40aSBarry Smith #define CHUNKSIZE 10
17434a2ae208SSatish Balay #undef __FUNCT__
17444a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ"
1745dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
174692c4ed94SBarry Smith {
174792c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1748e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1749c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
17506849ba73SBarry Smith   PetscErrorCode    ierr;
1751d0f46423SBarry Smith   PetscInt          *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
1752273d9f13SBarry Smith   PetscTruth        roworiented=a->roworiented;
1753dd6ea824SBarry Smith   const PetscScalar *value = v;
1754f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
175592c4ed94SBarry Smith 
17563a40ed3dSBarry Smith   PetscFunctionBegin;
17570e324ae4SSatish Balay   if (roworiented) {
17580e324ae4SSatish Balay     stepval = (n-1)*bs;
17590e324ae4SSatish Balay   } else {
17600e324ae4SSatish Balay     stepval = (m-1)*bs;
17610e324ae4SSatish Balay   }
176292c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
176392c4ed94SBarry Smith     row  = im[k];
17645ef9f2a5SBarry Smith     if (row < 0) continue;
17652515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
176677431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
176792c4ed94SBarry Smith #endif
176892c4ed94SBarry Smith     rp   = aj + ai[row];
176992c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
177092c4ed94SBarry Smith     rmax = imax[row];
177192c4ed94SBarry Smith     nrow = ailen[row];
177292c4ed94SBarry Smith     low  = 0;
1773c71e6ed7SBarry Smith     high = nrow;
177492c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
17755ef9f2a5SBarry Smith       if (in[l] < 0) continue;
17762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
177777431f27SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1);
177892c4ed94SBarry Smith #endif
177992c4ed94SBarry Smith       col = in[l];
178092c4ed94SBarry Smith       if (roworiented) {
17810e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
17820e324ae4SSatish Balay       } else {
17830e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
178492c4ed94SBarry Smith       }
17857cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
1786e2ee6c50SBarry Smith       lastcol = col;
178792c4ed94SBarry Smith       while (high-low > 7) {
178892c4ed94SBarry Smith         t = (low+high)/2;
178992c4ed94SBarry Smith         if (rp[t] > col) high = t;
179092c4ed94SBarry Smith         else             low  = t;
179192c4ed94SBarry Smith       }
179292c4ed94SBarry Smith       for (i=low; i<high; i++) {
179392c4ed94SBarry Smith         if (rp[i] > col) break;
179492c4ed94SBarry Smith         if (rp[i] == col) {
17958a84c255SSatish Balay           bap  = ap +  bs2*i;
17960e324ae4SSatish Balay           if (roworiented) {
17978a84c255SSatish Balay             if (is == ADD_VALUES) {
1798dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1799dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18008a84c255SSatish Balay                   bap[jj] += *value++;
1801dd9472c6SBarry Smith                 }
1802dd9472c6SBarry Smith               }
18030e324ae4SSatish Balay             } else {
1804dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1805dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18060e324ae4SSatish Balay                   bap[jj] = *value++;
18078a84c255SSatish Balay                 }
1808dd9472c6SBarry Smith               }
1809dd9472c6SBarry Smith             }
18100e324ae4SSatish Balay           } else {
18110e324ae4SSatish Balay             if (is == ADD_VALUES) {
1812dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1813dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18140e324ae4SSatish Balay                   *bap++ += *value++;
1815dd9472c6SBarry Smith                 }
1816dd9472c6SBarry Smith               }
18170e324ae4SSatish Balay             } else {
1818dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1819dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18200e324ae4SSatish Balay                   *bap++  = *value++;
18210e324ae4SSatish Balay                 }
18228a84c255SSatish Balay               }
1823dd9472c6SBarry Smith             }
1824dd9472c6SBarry Smith           }
1825f1241b54SBarry Smith           goto noinsert2;
182692c4ed94SBarry Smith         }
182792c4ed94SBarry Smith       }
182889280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
1829085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1830421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
1831c03d1d03SSatish Balay       N = nrow++ - 1; high++;
183292c4ed94SBarry Smith       /* shift up all the later entries in this row */
183392c4ed94SBarry Smith       for (ii=N; ii>=i; ii--) {
183492c4ed94SBarry Smith         rp[ii+1] = rp[ii];
1835549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
183692c4ed94SBarry Smith       }
1837549d3d68SSatish Balay       if (N >= i) {
1838549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1839549d3d68SSatish Balay       }
184092c4ed94SBarry Smith       rp[i] = col;
18418a84c255SSatish Balay       bap   = ap +  bs2*i;
18420e324ae4SSatish Balay       if (roworiented) {
1843dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1844dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs) {
18450e324ae4SSatish Balay             bap[jj] = *value++;
1846dd9472c6SBarry Smith           }
1847dd9472c6SBarry Smith         }
18480e324ae4SSatish Balay       } else {
1849dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1850dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++) {
18510e324ae4SSatish Balay             *bap++  = *value++;
18520e324ae4SSatish Balay           }
1853dd9472c6SBarry Smith         }
1854dd9472c6SBarry Smith       }
1855f1241b54SBarry Smith       noinsert2:;
185692c4ed94SBarry Smith       low = i;
185792c4ed94SBarry Smith     }
185892c4ed94SBarry Smith     ailen[row] = nrow;
185992c4ed94SBarry Smith   }
18603a40ed3dSBarry Smith   PetscFunctionReturn(0);
186192c4ed94SBarry Smith }
186226e093fcSHong Zhang 
18634a2ae208SSatish Balay #undef __FUNCT__
18644a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ"
1865dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1866584200bdSSatish Balay {
1867584200bdSSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1868c1ac3661SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
1869d0f46423SBarry Smith   PetscInt       m = A->rmap->N,*ip,N,*ailen = a->ilen;
18706849ba73SBarry Smith   PetscErrorCode ierr;
1871c1ac3661SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
18723f1db9ecSBarry Smith   MatScalar      *aa = a->a,*ap;
18733447b6efSHong Zhang   PetscReal      ratio=0.6;
1874584200bdSSatish Balay 
18753a40ed3dSBarry Smith   PetscFunctionBegin;
18763a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1877584200bdSSatish Balay 
187843ee02c3SBarry Smith   if (m) rmax = ailen[0];
1879584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1880584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1881584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1882d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
1883584200bdSSatish Balay     if (fshift) {
1884a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
1885584200bdSSatish Balay       N = ailen[i];
1886584200bdSSatish Balay       for (j=0; j<N; j++) {
1887584200bdSSatish Balay         ip[j-fshift] = ip[j];
1888549d3d68SSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1889584200bdSSatish Balay       }
1890584200bdSSatish Balay     }
1891584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1892584200bdSSatish Balay   }
1893584200bdSSatish Balay   if (mbs) {
1894584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1895584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1896584200bdSSatish Balay   }
1897584200bdSSatish Balay   /* reset ilen and imax for each row */
1898584200bdSSatish Balay   for (i=0; i<mbs; i++) {
1899584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
1900584200bdSSatish Balay   }
1901a7c10996SSatish Balay   a->nz = ai[mbs];
1902584200bdSSatish Balay 
1903584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1904b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1905584200bdSSatish Balay   if (fshift && a->diag) {
1906606d414cSSatish Balay     ierr = PetscFree(a->diag);CHKERRQ(ierr);
190752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1908584200bdSSatish Balay     a->diag = 0;
1909584200bdSSatish Balay   }
1910d0f46423SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
1911ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
1912ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
1913e2f3b5e9SSatish Balay   a->reallocs          = 0;
19140e6d2581SBarry Smith   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
1915cf4441caSHong Zhang 
1916cb5d8e9eSHong Zhang   /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */
19172f53aa61SHong Zhang   if (a->compressedrow.use){
1918317fbc4cSHong Zhang     ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
191973e7a558SHong Zhang   }
192088e51ccdSHong Zhang 
192188e51ccdSHong Zhang   A->same_nonzero = PETSC_TRUE;
19223a40ed3dSBarry Smith   PetscFunctionReturn(0);
1923584200bdSSatish Balay }
1924584200bdSSatish Balay 
1925bea157c4SSatish Balay /*
1926bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1927bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1928bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
1929bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
1930bea157c4SSatish Balay */
19314a2ae208SSatish Balay #undef __FUNCT__
19324a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks"
1933c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
1934d9b7c43dSSatish Balay {
1935c1ac3661SBarry Smith   PetscInt   i,j,k,row;
1936bea157c4SSatish Balay   PetscTruth flg;
19373a40ed3dSBarry Smith 
1938433994e6SBarry Smith   PetscFunctionBegin;
1939bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
1940bea157c4SSatish Balay     row = idx[i];
1941bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
1942bea157c4SSatish Balay       sizes[j] = 1;
1943bea157c4SSatish Balay       i++;
1944e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
1945bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
1946bea157c4SSatish Balay       i++;
1947bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
1948bea157c4SSatish Balay       flg = PETSC_TRUE;
1949bea157c4SSatish Balay       for (k=1; k<bs; k++) {
1950bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
1951bea157c4SSatish Balay           flg = PETSC_FALSE;
1952bea157c4SSatish Balay           break;
1953d9b7c43dSSatish Balay         }
1954bea157c4SSatish Balay       }
1955abc0a331SBarry Smith       if (flg) { /* No break in the bs */
1956bea157c4SSatish Balay         sizes[j] = bs;
1957bea157c4SSatish Balay         i+= bs;
1958bea157c4SSatish Balay       } else {
1959bea157c4SSatish Balay         sizes[j] = 1;
1960bea157c4SSatish Balay         i++;
1961bea157c4SSatish Balay       }
1962bea157c4SSatish Balay     }
1963bea157c4SSatish Balay   }
1964bea157c4SSatish Balay   *bs_max = j;
19653a40ed3dSBarry Smith   PetscFunctionReturn(0);
1966d9b7c43dSSatish Balay }
1967d9b7c43dSSatish Balay 
19684a2ae208SSatish Balay #undef __FUNCT__
19694a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ"
1970f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag)
1971d9b7c43dSSatish Balay {
1972d9b7c43dSSatish Balay   Mat_SeqBAIJ    *baij=(Mat_SeqBAIJ*)A->data;
1973dfbe8321SBarry Smith   PetscErrorCode ierr;
1974f4df32b1SMatthew Knepley   PetscInt       i,j,k,count,*rows;
1975d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max;
197687828ca2SBarry Smith   PetscScalar    zero = 0.0;
19773f1db9ecSBarry Smith   MatScalar      *aa;
1978d9b7c43dSSatish Balay 
19793a40ed3dSBarry Smith   PetscFunctionBegin;
1980d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
1981bea157c4SSatish Balay   /* allocate memory for rows,sizes */
1982c1ac3661SBarry Smith   ierr  = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr);
1983bea157c4SSatish Balay   sizes = rows + is_n;
1984bea157c4SSatish Balay 
1985563b5814SBarry Smith   /* copy IS values to rows, and sort them */
1986bea157c4SSatish Balay   for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; }
1987bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
1988dffd3267SBarry Smith   if (baij->keepzeroedrows) {
1989dffd3267SBarry Smith     for (i=0; i<is_n; i++) { sizes[i] = 1; }
1990dffd3267SBarry Smith     bs_max = is_n;
199188e51ccdSHong Zhang     A->same_nonzero = PETSC_TRUE;
1992dffd3267SBarry Smith   } else {
1993bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
199488e51ccdSHong Zhang     A->same_nonzero = PETSC_FALSE;
1995dffd3267SBarry Smith   }
1996bea157c4SSatish Balay 
1997bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
1998bea157c4SSatish Balay     row   = rows[j];
1999d0f46423SBarry Smith     if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
2000bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2001b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2002dffd3267SBarry Smith     if (sizes[i] == bs && !baij->keepzeroedrows) {
2003f4df32b1SMatthew Knepley       if (diag != 0.0) {
2004bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2005bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2006bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
2007bea157c4SSatish Balay           ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr);
2008a07cd24cSSatish Balay         }
2009563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2010bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2011f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2012bea157c4SSatish Balay         }
2013f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2014bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2015f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2016bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2017aa482453SBarry Smith #if defined (PETSC_USE_DEBUG)
2018634064b4SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2019bea157c4SSatish Balay #endif
2020bea157c4SSatish Balay       for (k=0; k<count; k++) {
2021d9b7c43dSSatish Balay         aa[0] =  zero;
2022d9b7c43dSSatish Balay         aa    += bs;
2023d9b7c43dSSatish Balay       }
2024f4df32b1SMatthew Knepley       if (diag != 0.0) {
2025f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2026d9b7c43dSSatish Balay       }
2027d9b7c43dSSatish Balay     }
2028bea157c4SSatish Balay   }
2029bea157c4SSatish Balay 
2030606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
20319a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20323a40ed3dSBarry Smith   PetscFunctionReturn(0);
2033d9b7c43dSSatish Balay }
20341c351548SSatish Balay 
20354a2ae208SSatish Balay #undef __FUNCT__
20364a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ"
2037c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
20382d61bbb3SSatish Balay {
20392d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2040e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2041c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2042d0f46423SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
20436849ba73SBarry Smith   PetscErrorCode ierr;
2044c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2045273d9f13SBarry Smith   PetscTruth     roworiented=a->roworiented;
20463f1db9ecSBarry Smith   MatScalar      *ap,value,*aa=a->a,*bap;
20472d61bbb3SSatish Balay 
20482d61bbb3SSatish Balay   PetscFunctionBegin;
20492d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2050085a36d4SBarry Smith     row  = im[k];
2051085a36d4SBarry Smith     brow = row/bs;
20525ef9f2a5SBarry Smith     if (row < 0) continue;
20532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2054d0f46423SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
20552d61bbb3SSatish Balay #endif
20562d61bbb3SSatish Balay     rp   = aj + ai[brow];
20572d61bbb3SSatish Balay     ap   = aa + bs2*ai[brow];
20582d61bbb3SSatish Balay     rmax = imax[brow];
20592d61bbb3SSatish Balay     nrow = ailen[brow];
20602d61bbb3SSatish Balay     low  = 0;
2061c71e6ed7SBarry Smith     high = nrow;
20622d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
20635ef9f2a5SBarry Smith       if (in[l] < 0) continue;
20642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2065d0f46423SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
20662d61bbb3SSatish Balay #endif
20672d61bbb3SSatish Balay       col = in[l]; bcol = col/bs;
20682d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
20692d61bbb3SSatish Balay       if (roworiented) {
20705ef9f2a5SBarry Smith         value = v[l + k*n];
20712d61bbb3SSatish Balay       } else {
20722d61bbb3SSatish Balay         value = v[k + l*m];
20732d61bbb3SSatish Balay       }
20747cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2075e2ee6c50SBarry Smith       lastcol = col;
20762d61bbb3SSatish Balay       while (high-low > 7) {
20772d61bbb3SSatish Balay         t = (low+high)/2;
20782d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
20792d61bbb3SSatish Balay         else              low  = t;
20802d61bbb3SSatish Balay       }
20812d61bbb3SSatish Balay       for (i=low; i<high; i++) {
20822d61bbb3SSatish Balay         if (rp[i] > bcol) break;
20832d61bbb3SSatish Balay         if (rp[i] == bcol) {
20842d61bbb3SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
20852d61bbb3SSatish Balay           if (is == ADD_VALUES) *bap += value;
20862d61bbb3SSatish Balay           else                  *bap  = value;
20872d61bbb3SSatish Balay           goto noinsert1;
20882d61bbb3SSatish Balay         }
20892d61bbb3SSatish Balay       }
20902d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2091085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2092421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2093c03d1d03SSatish Balay       N = nrow++ - 1; high++;
20942d61bbb3SSatish Balay       /* shift up all the later entries in this row */
20952d61bbb3SSatish Balay       for (ii=N; ii>=i; ii--) {
20962d61bbb3SSatish Balay         rp[ii+1] = rp[ii];
2097549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
20982d61bbb3SSatish Balay       }
2099549d3d68SSatish Balay       if (N>=i) {
2100549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2101549d3d68SSatish Balay       }
21022d61bbb3SSatish Balay       rp[i]                      = bcol;
21032d61bbb3SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
2104085a36d4SBarry Smith       a->nz++;
21052d61bbb3SSatish Balay       noinsert1:;
21062d61bbb3SSatish Balay       low = i;
21072d61bbb3SSatish Balay     }
21082d61bbb3SSatish Balay     ailen[brow] = nrow;
21092d61bbb3SSatish Balay   }
211088e51ccdSHong Zhang   A->same_nonzero = PETSC_FALSE;
21112d61bbb3SSatish Balay   PetscFunctionReturn(0);
21122d61bbb3SSatish Balay }
21132d61bbb3SSatish Balay 
2114db4efbfdSBarry Smith EXTERN PetscErrorCode MatSeqBAIJSetNumericFactorization(Mat,PetscTruth);
21152d61bbb3SSatish Balay 
21164a2ae208SSatish Balay #undef __FUNCT__
21174a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ"
2118dfbe8321SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,MatFactorInfo *info)
21192d61bbb3SSatish Balay {
21202d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
21212d61bbb3SSatish Balay   Mat            outA;
2122dfbe8321SBarry Smith   PetscErrorCode ierr;
2123667159a5SBarry Smith   PetscTruth     row_identity,col_identity;
21242d61bbb3SSatish Balay 
21252d61bbb3SSatish Balay   PetscFunctionBegin;
2126d3d32019SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2127667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2128667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2129667159a5SBarry Smith   if (!row_identity || !col_identity) {
2130634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
2131667159a5SBarry Smith   }
21322d61bbb3SSatish Balay 
21332d61bbb3SSatish Balay   outA          = inA;
21345c9eb25fSBarry Smith   inA->factor   = MAT_FACTOR_LU;
21352d61bbb3SSatish Balay 
2136c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2137cf242676SKris Buschelman 
2138c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
2139c3122656SLisandro Dalcin   if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); }
2140c3122656SLisandro Dalcin   a->row = row;
2141c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
2142c3122656SLisandro Dalcin   if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); }
2143c3122656SLisandro Dalcin   a->col = col;
2144c38d4ed2SBarry Smith 
2145c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
21464c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
2148c38d4ed2SBarry Smith 
2149db4efbfdSBarry Smith   ierr = MatSeqBAIJSetNumericFactorization(inA,row_identity && col_identity);CHKERRQ(ierr);
2150c38d4ed2SBarry Smith   if (!a->solve_work) {
2151d0f46423SBarry Smith     ierr = PetscMalloc((inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
2152d0f46423SBarry Smith     ierr = PetscLogObjectMemory(inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2153c38d4ed2SBarry Smith   }
2154*719d5645SBarry Smith   ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr);
2155667159a5SBarry Smith 
21562d61bbb3SSatish Balay   PetscFunctionReturn(0);
21572d61bbb3SSatish Balay }
2158d9b7c43dSSatish Balay 
2159fb2e594dSBarry Smith EXTERN_C_BEGIN
21604a2ae208SSatish Balay #undef __FUNCT__
21614a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ"
2162be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
216327a8da17SBarry Smith {
216427a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data;
2165c1ac3661SBarry Smith   PetscInt    i,nz,nbs;
216627a8da17SBarry Smith 
216727a8da17SBarry Smith   PetscFunctionBegin;
216814db4f74SSatish Balay   nz  = baij->maxnz/baij->bs2;
216914db4f74SSatish Balay   nbs = baij->nbs;
217027a8da17SBarry Smith   for (i=0; i<nz; i++) {
217127a8da17SBarry Smith     baij->j[i] = indices[i];
217227a8da17SBarry Smith   }
217327a8da17SBarry Smith   baij->nz = nz;
217414db4f74SSatish Balay   for (i=0; i<nbs; i++) {
217527a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
217627a8da17SBarry Smith   }
217727a8da17SBarry Smith 
217827a8da17SBarry Smith   PetscFunctionReturn(0);
217927a8da17SBarry Smith }
2180fb2e594dSBarry Smith EXTERN_C_END
218127a8da17SBarry Smith 
21824a2ae208SSatish Balay #undef __FUNCT__
21834a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices"
218427a8da17SBarry Smith /*@
218527a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
218627a8da17SBarry Smith        in the matrix.
218727a8da17SBarry Smith 
218827a8da17SBarry Smith   Input Parameters:
218927a8da17SBarry Smith +  mat - the SeqBAIJ matrix
219027a8da17SBarry Smith -  indices - the column indices
219127a8da17SBarry Smith 
219215091d37SBarry Smith   Level: advanced
219315091d37SBarry Smith 
219427a8da17SBarry Smith   Notes:
219527a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
219627a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
219727a8da17SBarry Smith   of the MatSetValues() operation.
219827a8da17SBarry Smith 
219927a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2200d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
220127a8da17SBarry Smith 
220227a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
220327a8da17SBarry Smith 
220427a8da17SBarry Smith @*/
2205be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
220627a8da17SBarry Smith {
2207c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
220827a8da17SBarry Smith 
220927a8da17SBarry Smith   PetscFunctionBegin;
22104482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
22114482741eSBarry Smith   PetscValidPointer(indices,2);
2212c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
221327a8da17SBarry Smith   if (f) {
221427a8da17SBarry Smith     ierr = (*f)(mat,indices);CHKERRQ(ierr);
221527a8da17SBarry Smith   } else {
2216634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices");
221727a8da17SBarry Smith   }
221827a8da17SBarry Smith   PetscFunctionReturn(0);
221927a8da17SBarry Smith }
222027a8da17SBarry Smith 
22214a2ae208SSatish Balay #undef __FUNCT__
2222985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ"
2223985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2224273d9f13SBarry Smith {
2225273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2226dfbe8321SBarry Smith   PetscErrorCode ierr;
2227c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2228273d9f13SBarry Smith   PetscReal      atmp;
222987828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2230273d9f13SBarry Smith   MatScalar      *aa;
2231c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2232273d9f13SBarry Smith 
2233273d9f13SBarry Smith   PetscFunctionBegin;
2234273d9f13SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2235d0f46423SBarry Smith   bs   = A->rmap->bs;
2236273d9f13SBarry Smith   aa   = a->a;
2237273d9f13SBarry Smith   ai   = a->i;
2238273d9f13SBarry Smith   aj   = a->j;
2239273d9f13SBarry Smith   mbs  = a->mbs;
2240273d9f13SBarry Smith 
22412dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
22421ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2243273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2244d0f46423SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2245273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2246273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2247273d9f13SBarry Smith     brow  = bs*i;
2248273d9f13SBarry Smith     for (j=0; j<ncols; j++){
2249273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++){
2250273d9f13SBarry Smith         for (krow=0; krow<bs; krow++){
2251273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2252273d9f13SBarry Smith           row = brow + krow;    /* row index */
2253a83599f4SBarry Smith           /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */
2254985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2255273d9f13SBarry Smith         }
2256273d9f13SBarry Smith       }
2257273d9f13SBarry Smith       aj++;
2258273d9f13SBarry Smith     }
2259273d9f13SBarry Smith   }
22601ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2261273d9f13SBarry Smith   PetscFunctionReturn(0);
2262273d9f13SBarry Smith }
2263273d9f13SBarry Smith 
22644a2ae208SSatish Balay #undef __FUNCT__
22653c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ"
22663c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
22673c896bc6SHong Zhang {
22683c896bc6SHong Zhang   PetscErrorCode ierr;
22693c896bc6SHong Zhang 
22703c896bc6SHong Zhang   PetscFunctionBegin;
22713c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
22723c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
22733c896bc6SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
22743c896bc6SHong Zhang     Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data;
22753c896bc6SHong Zhang 
2276d0f46423SBarry Smith     if (a->i[A->rmap->N] != b->i[B->rmap->N]) {
22773c896bc6SHong Zhang       SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
22783c896bc6SHong Zhang     }
2279d0f46423SBarry Smith     ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr);
22803c896bc6SHong Zhang   } else {
22813c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
22823c896bc6SHong Zhang   }
22833c896bc6SHong Zhang   PetscFunctionReturn(0);
22843c896bc6SHong Zhang }
22853c896bc6SHong Zhang 
22863c896bc6SHong Zhang #undef __FUNCT__
22874a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ"
2288dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A)
2289273d9f13SBarry Smith {
2290dfbe8321SBarry Smith   PetscErrorCode ierr;
2291273d9f13SBarry Smith 
2292273d9f13SBarry Smith   PetscFunctionBegin;
2293db4efbfdSBarry Smith   ierr =  MatSeqBAIJSetPreallocation_SeqBAIJ(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr);
2294273d9f13SBarry Smith   PetscFunctionReturn(0);
2295273d9f13SBarry Smith }
2296273d9f13SBarry Smith 
22974a2ae208SSatish Balay #undef __FUNCT__
22984a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ"
2299dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2300f2a5309cSSatish Balay {
2301f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
2302f2a5309cSSatish Balay   PetscFunctionBegin;
2303f2a5309cSSatish Balay   *array = a->a;
2304f2a5309cSSatish Balay   PetscFunctionReturn(0);
2305f2a5309cSSatish Balay }
2306f2a5309cSSatish Balay 
23074a2ae208SSatish Balay #undef __FUNCT__
23084a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ"
2309dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2310f2a5309cSSatish Balay {
2311f2a5309cSSatish Balay   PetscFunctionBegin;
2312f2a5309cSSatish Balay   PetscFunctionReturn(0);
2313f2a5309cSSatish Balay }
2314f2a5309cSSatish Balay 
231542ee4b1aSHong Zhang #include "petscblaslapack.h"
231642ee4b1aSHong Zhang #undef __FUNCT__
231742ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ"
2318f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
231942ee4b1aSHong Zhang {
232042ee4b1aSHong Zhang   Mat_SeqBAIJ    *x  = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data;
2321dfbe8321SBarry Smith   PetscErrorCode ierr;
2322d0f46423SBarry Smith   PetscInt       i,bs=Y->rmap->bs,j,bs2;
23230805154bSBarry Smith   PetscBLASInt   one=1,bnz = PetscBLASIntCast(x->nz);
232442ee4b1aSHong Zhang 
232542ee4b1aSHong Zhang   PetscFunctionBegin;
232642ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2327f4df32b1SMatthew Knepley     PetscScalar alpha = a;
2328f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
2329c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2330c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
2331c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
2332c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
2333c537a176SHong Zhang     }
2334c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
2335c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
2336c4319e64SHong Zhang       y->XtoY = X;
2337c537a176SHong Zhang     }
2338c4319e64SHong Zhang     bs2 = bs*bs;
2339c537a176SHong Zhang     for (i=0; i<x->nz; i++) {
2340c4319e64SHong Zhang       j = 0;
2341c4319e64SHong Zhang       while (j < bs2){
2342f4df32b1SMatthew Knepley         y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]);
2343c4319e64SHong Zhang         j++;
2344c537a176SHong Zhang       }
2345c4319e64SHong Zhang     }
23461e2582c4SBarry Smith     ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr);
234742ee4b1aSHong Zhang   } else {
2348f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
234942ee4b1aSHong Zhang   }
235042ee4b1aSHong Zhang   PetscFunctionReturn(0);
235142ee4b1aSHong Zhang }
235242ee4b1aSHong Zhang 
235399cafbc1SBarry Smith #undef __FUNCT__
235499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ"
235599cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
235699cafbc1SBarry Smith {
235799cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
235899cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2359dd6ea824SBarry Smith   MatScalar      *aa = a->a;
236099cafbc1SBarry Smith 
236199cafbc1SBarry Smith   PetscFunctionBegin;
236299cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
236399cafbc1SBarry Smith   PetscFunctionReturn(0);
236499cafbc1SBarry Smith }
236599cafbc1SBarry Smith 
236699cafbc1SBarry Smith #undef __FUNCT__
236799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ"
236899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
236999cafbc1SBarry Smith {
237099cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
237199cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2372dd6ea824SBarry Smith   MatScalar      *aa = a->a;
237399cafbc1SBarry Smith 
237499cafbc1SBarry Smith   PetscFunctionBegin;
237599cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
237699cafbc1SBarry Smith   PetscFunctionReturn(0);
237799cafbc1SBarry Smith }
237899cafbc1SBarry Smith 
237999cafbc1SBarry Smith 
23802593348eSBarry Smith /* -------------------------------------------------------------------*/
2381cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2382cc2dc46cSBarry Smith        MatGetRow_SeqBAIJ,
2383cc2dc46cSBarry Smith        MatRestoreRow_SeqBAIJ,
2384cc2dc46cSBarry Smith        MatMult_SeqBAIJ_N,
238597304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N,
23867c922b88SBarry Smith        MatMultTranspose_SeqBAIJ,
23877c922b88SBarry Smith        MatMultTransposeAdd_SeqBAIJ,
2388db4efbfdSBarry Smith        0,
2389cc2dc46cSBarry Smith        0,
2390cc2dc46cSBarry Smith        0,
239197304618SKris Buschelman /*10*/ 0,
2392cc2dc46cSBarry Smith        MatLUFactor_SeqBAIJ,
2393cc2dc46cSBarry Smith        0,
2394b6490206SBarry Smith        0,
2395f2501298SSatish Balay        MatTranspose_SeqBAIJ,
239697304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ,
2397cc2dc46cSBarry Smith        MatEqual_SeqBAIJ,
2398cc2dc46cSBarry Smith        MatGetDiagonal_SeqBAIJ,
2399cc2dc46cSBarry Smith        MatDiagonalScale_SeqBAIJ,
2400cc2dc46cSBarry Smith        MatNorm_SeqBAIJ,
240197304618SKris Buschelman /*20*/ 0,
2402cc2dc46cSBarry Smith        MatAssemblyEnd_SeqBAIJ,
2403cc2dc46cSBarry Smith        0,
2404cc2dc46cSBarry Smith        MatSetOption_SeqBAIJ,
2405cc2dc46cSBarry Smith        MatZeroEntries_SeqBAIJ,
240697304618SKris Buschelman /*25*/ MatZeroRows_SeqBAIJ,
2407db4efbfdSBarry Smith        0,
2408db4efbfdSBarry Smith        0,
2409db4efbfdSBarry Smith        0,
2410db4efbfdSBarry Smith        0,
241197304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqBAIJ,
2412db4efbfdSBarry Smith        0,
2413db4efbfdSBarry Smith        0,
2414f2a5309cSSatish Balay        MatGetArray_SeqBAIJ,
2415f2a5309cSSatish Balay        MatRestoreArray_SeqBAIJ,
241697304618SKris Buschelman /*35*/ MatDuplicate_SeqBAIJ,
2417cc2dc46cSBarry Smith        0,
2418cc2dc46cSBarry Smith        0,
2419cc2dc46cSBarry Smith        MatILUFactor_SeqBAIJ,
2420cc2dc46cSBarry Smith        0,
242197304618SKris Buschelman /*40*/ MatAXPY_SeqBAIJ,
2422cc2dc46cSBarry Smith        MatGetSubMatrices_SeqBAIJ,
2423cc2dc46cSBarry Smith        MatIncreaseOverlap_SeqBAIJ,
2424cc2dc46cSBarry Smith        MatGetValues_SeqBAIJ,
24253c896bc6SHong Zhang        MatCopy_SeqBAIJ,
24268c07d4e3SBarry Smith /*45*/ 0,
2427cc2dc46cSBarry Smith        MatScale_SeqBAIJ,
2428cc2dc46cSBarry Smith        0,
2429cc2dc46cSBarry Smith        0,
2430cc2dc46cSBarry Smith        0,
2431521d7252SBarry Smith /*50*/ 0,
24323b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
243392c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
2434cc2dc46cSBarry Smith        0,
2435cc2dc46cSBarry Smith        0,
243697304618SKris Buschelman /*55*/ 0,
2437cc2dc46cSBarry Smith        0,
2438cc2dc46cSBarry Smith        0,
2439cc2dc46cSBarry Smith        0,
2440d3825aa8SBarry Smith        MatSetValuesBlocked_SeqBAIJ,
244197304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqBAIJ,
2442b9b97703SBarry Smith        MatDestroy_SeqBAIJ,
2443b9b97703SBarry Smith        MatView_SeqBAIJ,
2444357abbc8SBarry Smith        0,
2445273d9f13SBarry Smith        0,
244697304618SKris Buschelman /*65*/ 0,
2447273d9f13SBarry Smith        0,
2448273d9f13SBarry Smith        0,
2449273d9f13SBarry Smith        0,
2450273d9f13SBarry Smith        0,
2451985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqBAIJ,
245297304618SKris Buschelman        MatConvert_Basic,
2453273d9f13SBarry Smith        0,
245497304618SKris Buschelman        0,
245597304618SKris Buschelman        0,
245697304618SKris Buschelman /*75*/ 0,
245797304618SKris Buschelman        0,
245897304618SKris Buschelman        0,
245997304618SKris Buschelman        0,
246097304618SKris Buschelman        0,
246197304618SKris Buschelman /*80*/ 0,
246297304618SKris Buschelman        0,
246397304618SKris Buschelman        0,
246497304618SKris Buschelman        0,
2465865e5f61SKris Buschelman        MatLoad_SeqBAIJ,
2466865e5f61SKris Buschelman /*85*/ 0,
2467b01c7715SBarry Smith        0,
2468b01c7715SBarry Smith        0,
2469b01c7715SBarry Smith        0,
2470865e5f61SKris Buschelman        0,
2471865e5f61SKris Buschelman /*90*/ 0,
2472865e5f61SKris Buschelman        0,
2473865e5f61SKris Buschelman        0,
2474865e5f61SKris Buschelman        0,
2475865e5f61SKris Buschelman        0,
2476865e5f61SKris Buschelman /*95*/ 0,
2477865e5f61SKris Buschelman        0,
2478865e5f61SKris Buschelman        0,
247999cafbc1SBarry Smith        0,
248099cafbc1SBarry Smith        0,
248199cafbc1SBarry Smith /*100*/0,
248299cafbc1SBarry Smith        0,
248399cafbc1SBarry Smith        0,
248499cafbc1SBarry Smith        0,
248599cafbc1SBarry Smith        0,
248699cafbc1SBarry Smith /*105*/0,
248799cafbc1SBarry Smith        MatRealPart_SeqBAIJ,
24882af78befSBarry Smith        MatImaginaryPart_SeqBAIJ,
24892af78befSBarry Smith        0,
24902af78befSBarry Smith        0,
24912af78befSBarry Smith /*110*/0,
24922af78befSBarry Smith        0,
24932af78befSBarry Smith        0,
24942af78befSBarry Smith        0,
24952af78befSBarry Smith        MatMissingDiagonal_SeqBAIJ
24962af78befSBarry Smith /*115*/
249799cafbc1SBarry Smith };
24982593348eSBarry Smith 
24993e90b805SBarry Smith EXTERN_C_BEGIN
25004a2ae208SSatish Balay #undef __FUNCT__
25014a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ"
2502be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat)
25033e90b805SBarry Smith {
25043e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
2505d0f46423SBarry Smith   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
2506dfbe8321SBarry Smith   PetscErrorCode ierr;
25073e90b805SBarry Smith 
25083e90b805SBarry Smith   PetscFunctionBegin;
25093e90b805SBarry Smith   if (aij->nonew != 1) {
2510512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
25113e90b805SBarry Smith   }
25123e90b805SBarry Smith 
25133e90b805SBarry Smith   /* allocate space for values if not already there */
25143e90b805SBarry Smith   if (!aij->saved_values) {
251587828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
25163e90b805SBarry Smith   }
25173e90b805SBarry Smith 
25183e90b805SBarry Smith   /* copy values over */
251987828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
25203e90b805SBarry Smith   PetscFunctionReturn(0);
25213e90b805SBarry Smith }
25223e90b805SBarry Smith EXTERN_C_END
25233e90b805SBarry Smith 
25243e90b805SBarry Smith EXTERN_C_BEGIN
25254a2ae208SSatish Balay #undef __FUNCT__
25264a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ"
2527be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat)
25283e90b805SBarry Smith {
25293e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
25306849ba73SBarry Smith   PetscErrorCode ierr;
2531d0f46423SBarry Smith   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
25323e90b805SBarry Smith 
25333e90b805SBarry Smith   PetscFunctionBegin;
25343e90b805SBarry Smith   if (aij->nonew != 1) {
2535512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
25363e90b805SBarry Smith   }
25373e90b805SBarry Smith   if (!aij->saved_values) {
2538634064b4SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
25393e90b805SBarry Smith   }
25403e90b805SBarry Smith 
25413e90b805SBarry Smith   /* copy values over */
254287828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
25433e90b805SBarry Smith   PetscFunctionReturn(0);
25443e90b805SBarry Smith }
25453e90b805SBarry Smith EXTERN_C_END
25463e90b805SBarry Smith 
2547273d9f13SBarry Smith EXTERN_C_BEGIN
2548f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
2549f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2550273d9f13SBarry Smith EXTERN_C_END
2551273d9f13SBarry Smith 
2552273d9f13SBarry Smith EXTERN_C_BEGIN
25534a2ae208SSatish Balay #undef __FUNCT__
2554a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ"
2555be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2556a23d5eceSKris Buschelman {
2557a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
25586849ba73SBarry Smith   PetscErrorCode ierr;
2559db4efbfdSBarry Smith   PetscInt       i,mbs,nbs,bs2,newbs = PetscAbs(bs);
2560ab93d7beSBarry Smith   PetscTruth     flg,skipallocation = PETSC_FALSE;
2561a23d5eceSKris Buschelman 
2562a23d5eceSKris Buschelman   PetscFunctionBegin;
2563a23d5eceSKris Buschelman 
2564ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2565ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2566ab93d7beSBarry Smith     nz             = 0;
2567ab93d7beSBarry Smith   }
25688c07d4e3SBarry Smith 
2569db4efbfdSBarry Smith   if (bs < 0) {
25707adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr);
2571db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
25728c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2573db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2574db4efbfdSBarry Smith   }
2575a23d5eceSKris Buschelman   if (nnz && newbs != bs) {
2576634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz");
2577a23d5eceSKris Buschelman   }
2578a23d5eceSKris Buschelman   bs   = newbs;
2579a23d5eceSKris Buschelman 
2580d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
2581d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2582d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2583899cda47SBarry Smith 
2584899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2585899cda47SBarry Smith 
2586d0f46423SBarry Smith   mbs  = B->rmap->n/bs;
2587d0f46423SBarry Smith   nbs  = B->cmap->n/bs;
2588a23d5eceSKris Buschelman   bs2  = bs*bs;
2589a23d5eceSKris Buschelman 
2590d0f46423SBarry Smith   if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) {
2591d0f46423SBarry Smith     SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs);
2592a23d5eceSKris Buschelman   }
2593a23d5eceSKris Buschelman 
2594a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
259577431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
2596a23d5eceSKris Buschelman   if (nnz) {
2597a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
259877431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
259977431f27SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
2600a23d5eceSKris Buschelman     }
2601a23d5eceSKris Buschelman   }
2602a23d5eceSKris Buschelman 
2603a23d5eceSKris Buschelman   b       = (Mat_SeqBAIJ*)B->data;
26047adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
26058c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
26068c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
26078c07d4e3SBarry Smith 
2608a23d5eceSKris Buschelman   if (!flg) {
2609a23d5eceSKris Buschelman     switch (bs) {
2610a23d5eceSKris Buschelman     case 1:
2611a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_1;
2612a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_1;
26136d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_1;
2614a23d5eceSKris Buschelman       break;
2615a23d5eceSKris Buschelman     case 2:
2616a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_2;
2617a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_2;
2618b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_2;
2619a23d5eceSKris Buschelman       break;
2620a23d5eceSKris Buschelman     case 3:
2621a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_3;
2622a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_3;
2623b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_3;
2624a23d5eceSKris Buschelman       break;
2625a23d5eceSKris Buschelman     case 4:
2626a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_4;
2627a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_4;
2628b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_4;
2629a23d5eceSKris Buschelman       break;
2630a23d5eceSKris Buschelman     case 5:
2631a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_5;
2632a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_5;
2633b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_5;
2634a23d5eceSKris Buschelman       break;
2635a23d5eceSKris Buschelman     case 6:
2636a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_6;
2637a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_6;
26386d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_6;
2639a23d5eceSKris Buschelman       break;
2640a23d5eceSKris Buschelman     case 7:
2641a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_7;
2642a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_7;
26436d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_7;
2644a23d5eceSKris Buschelman       break;
2645a23d5eceSKris Buschelman     default:
2646a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_N;
2647a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_N;
2648a23d5eceSKris Buschelman       break;
2649a23d5eceSKris Buschelman     }
2650a23d5eceSKris Buschelman   }
2651d0f46423SBarry Smith   B->rmap->bs      = bs;
2652a23d5eceSKris Buschelman   b->mbs     = mbs;
2653a23d5eceSKris Buschelman   b->nbs     = nbs;
2654ab93d7beSBarry Smith   if (!skipallocation) {
26552ee49352SLisandro Dalcin     if (!b->imax) {
2656ab93d7beSBarry Smith       ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
26572ee49352SLisandro Dalcin     }
2658ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
2659ab93d7beSBarry Smith     for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
2660a23d5eceSKris Buschelman     if (!nnz) {
2661a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2662a23d5eceSKris Buschelman       else if (nz <= 0)        nz = 1;
2663a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
2664a23d5eceSKris Buschelman       nz = nz*mbs;
2665a23d5eceSKris Buschelman     } else {
2666a23d5eceSKris Buschelman       nz = 0;
2667a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
2668a23d5eceSKris Buschelman     }
2669a23d5eceSKris Buschelman 
2670a23d5eceSKris Buschelman     /* allocate the matrix space */
26712ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
2672d0f46423SBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap->N+1,PetscInt,&b->i);CHKERRQ(ierr);
2673d0f46423SBarry Smith     ierr = PetscLogObjectMemory(B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2674a23d5eceSKris Buschelman     ierr  = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
2675c1ac3661SBarry Smith     ierr  = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
2676a23d5eceSKris Buschelman     b->singlemalloc = PETSC_TRUE;
2677a23d5eceSKris Buschelman     b->i[0] = 0;
2678a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
2679a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
2680a23d5eceSKris Buschelman     }
2681e6b907acSBarry Smith     b->free_a     = PETSC_TRUE;
2682e6b907acSBarry Smith     b->free_ij    = PETSC_TRUE;
2683e811da20SHong Zhang   } else {
2684e6b907acSBarry Smith     b->free_a     = PETSC_FALSE;
2685e6b907acSBarry Smith     b->free_ij    = PETSC_FALSE;
2686ab93d7beSBarry Smith   }
2687a23d5eceSKris Buschelman 
2688d0f46423SBarry Smith   B->rmap->bs          = bs;
2689a23d5eceSKris Buschelman   b->bs2              = bs2;
2690a23d5eceSKris Buschelman   b->mbs              = mbs;
2691a23d5eceSKris Buschelman   b->nz               = 0;
2692a23d5eceSKris Buschelman   b->maxnz            = nz*bs2;
2693a23d5eceSKris Buschelman   B->info.nz_unneeded = (PetscReal)b->maxnz;
2694a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2695a23d5eceSKris Buschelman }
2696a23d5eceSKris Buschelman EXTERN_C_END
2697a23d5eceSKris Buschelman 
2698b24902e0SBarry Smith EXTERN_C_BEGIN
2699725b52f3SLisandro Dalcin #undef __FUNCT__
2700725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ"
2701cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2702725b52f3SLisandro Dalcin {
2703725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
2704725b52f3SLisandro Dalcin   PetscScalar    *values=0;
2705725b52f3SLisandro Dalcin   PetscErrorCode ierr;
2706725b52f3SLisandro Dalcin 
2707725b52f3SLisandro Dalcin   PetscFunctionBegin;
2708725b52f3SLisandro Dalcin 
2709725b52f3SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2710d0f46423SBarry Smith   B->rmap->bs = bs;
2711d0f46423SBarry Smith   B->cmap->bs = bs;
2712d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2713d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2714d0f46423SBarry Smith   m = B->rmap->n/bs;
2715725b52f3SLisandro Dalcin 
2716cf12db73SBarry Smith   if (ii[0] != 0) { SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); }
2717725b52f3SLisandro Dalcin   ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr);
2718725b52f3SLisandro Dalcin   for(i=0; i<m; i++) {
2719cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
2720725b52f3SLisandro Dalcin     if (nz < 0) { SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); }
2721725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
2722725b52f3SLisandro Dalcin     nnz[i] = nz;
2723725b52f3SLisandro Dalcin   }
2724725b52f3SLisandro Dalcin   ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
2725725b52f3SLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
2726725b52f3SLisandro Dalcin 
2727725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
2728725b52f3SLisandro Dalcin   if (!values) {
2729725b52f3SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2730725b52f3SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2731725b52f3SLisandro Dalcin   }
2732725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
2733cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2734cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2735cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2736725b52f3SLisandro Dalcin     ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2737725b52f3SLisandro Dalcin   }
2738725b52f3SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2739725b52f3SLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2740725b52f3SLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2741725b52f3SLisandro Dalcin 
2742725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
2743725b52f3SLisandro Dalcin }
2744725b52f3SLisandro Dalcin EXTERN_C_END
2745725b52f3SLisandro Dalcin 
2746725b52f3SLisandro Dalcin 
2747207126cbSBarry Smith EXTERN_C_BEGIN
2748b24902e0SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*);
2749db4efbfdSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable_seqbaij_petsc(Mat,MatFactorType,Mat*);
2750b24902e0SBarry Smith EXTERN_C_END
2751b24902e0SBarry Smith 
27520bad9183SKris Buschelman /*MC
2753fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
27540bad9183SKris Buschelman    block sparse compressed row format.
27550bad9183SKris Buschelman 
27560bad9183SKris Buschelman    Options Database Keys:
27570bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
27580bad9183SKris Buschelman 
27590bad9183SKris Buschelman   Level: beginner
27600bad9183SKris Buschelman 
2761f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
27620bad9183SKris Buschelman M*/
27630bad9183SKris Buschelman 
2764b24902e0SBarry Smith 
2765a23d5eceSKris Buschelman EXTERN_C_BEGIN
2766a23d5eceSKris Buschelman #undef __FUNCT__
27674a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ"
2768be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B)
27692593348eSBarry Smith {
2770dfbe8321SBarry Smith   PetscErrorCode ierr;
2771c1ac3661SBarry Smith   PetscMPIInt    size;
2772b6490206SBarry Smith   Mat_SeqBAIJ    *b;
27733b2fbd54SBarry Smith 
27743a40ed3dSBarry Smith   PetscFunctionBegin;
27757adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr);
277629bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
2777b6490206SBarry Smith 
277838f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr);
2779b0a32e0cSBarry Smith   B->data = (void*)b;
2780549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
278190f02eecSBarry Smith   B->mapping          = 0;
27822593348eSBarry Smith   b->row              = 0;
27832593348eSBarry Smith   b->col              = 0;
2784e51c0b9cSSatish Balay   b->icol             = 0;
27852593348eSBarry Smith   b->reallocs         = 0;
27863e90b805SBarry Smith   b->saved_values     = 0;
27872593348eSBarry Smith 
2788c4992f7dSBarry Smith   b->roworiented      = PETSC_TRUE;
27892593348eSBarry Smith   b->nonew            = 0;
27902593348eSBarry Smith   b->diag             = 0;
27912593348eSBarry Smith   b->solve_work       = 0;
2792de6a44a3SBarry Smith   b->mult_work        = 0;
27932a1b7f2aSHong Zhang   B->spptr            = 0;
27940e6d2581SBarry Smith   B->info.nz_unneeded = (PetscReal)b->maxnz;
2795883fce79SBarry Smith   b->keepzeroedrows   = PETSC_FALSE;
2796c4319e64SHong Zhang   b->xtoy              = 0;
2797c4319e64SHong Zhang   b->XtoY              = 0;
279873e7a558SHong Zhang   b->compressedrow.use     = PETSC_FALSE;
279926e093fcSHong Zhang   b->compressedrow.nrows   = 0;
280073e7a558SHong Zhang   b->compressedrow.i       = PETSC_NULL;
280173e7a558SHong Zhang   b->compressedrow.rindex  = PETSC_NULL;
280273e7a558SHong Zhang   b->compressedrow.checked = PETSC_FALSE;
280388e51ccdSHong Zhang   B->same_nonzero          = PETSC_FALSE;
28044e220ebcSLois Curfman McInnes 
2805db4efbfdSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactorAvailable_seqbaij_petsc_C",
2806db4efbfdSBarry Smith                                      "MatGetFactorAvailable_seqbaij_petsc",
2807db4efbfdSBarry Smith                                      MatGetFactorAvailable_seqbaij_petsc);CHKERRQ(ierr);
2808b24902e0SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C",
2809b24902e0SBarry Smith                                      "MatGetFactor_seqbaij_petsc",
2810b24902e0SBarry Smith                                      MatGetFactor_seqbaij_petsc);CHKERRQ(ierr);
281143516a2dSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C",
281243516a2dSKris Buschelman                                      "MatInvertBlockDiagonal_SeqBAIJ",
281343516a2dSKris Buschelman                                       MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
2814f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
28153e90b805SBarry Smith                                      "MatStoreValues_SeqBAIJ",
2816bc4b532fSSatish Balay                                       MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
2817f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
28183e90b805SBarry Smith                                      "MatRetrieveValues_SeqBAIJ",
2819bc4b532fSSatish Balay                                       MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
2820f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",
282127a8da17SBarry Smith                                      "MatSeqBAIJSetColumnIndices_SeqBAIJ",
2822bc4b532fSSatish Balay                                       MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
2823a6175056SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C",
2824273d9f13SBarry Smith                                      "MatConvert_SeqBAIJ_SeqAIJ",
2825273d9f13SBarry Smith                                       MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
2826a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",
2827a0e1a404SHong Zhang                                      "MatConvert_SeqBAIJ_SeqSBAIJ",
2828a0e1a404SHong Zhang                                       MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
2829a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C",
2830a23d5eceSKris Buschelman                                      "MatSeqBAIJSetPreallocation_SeqBAIJ",
2831a23d5eceSKris Buschelman                                       MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
2832725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",
2833725b52f3SLisandro Dalcin                                      "MatSeqBAIJSetPreallocationCSR_SeqBAIJ",
2834725b52f3SLisandro Dalcin                                       MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr);
283517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
28363a40ed3dSBarry Smith   PetscFunctionReturn(0);
28372593348eSBarry Smith }
2838273d9f13SBarry Smith EXTERN_C_END
28392593348eSBarry Smith 
28404a2ae208SSatish Balay #undef __FUNCT__
2841b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ"
2842*719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues)
28432593348eSBarry Smith {
2844b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
28456849ba73SBarry Smith   PetscErrorCode ierr;
2846a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
2847de6a44a3SBarry Smith 
28483a40ed3dSBarry Smith   PetscFunctionBegin;
284929bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
28502593348eSBarry Smith 
285133b91e9fSSatish Balay   ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr);
2852b6490206SBarry Smith   for (i=0; i<mbs; i++) {
28532593348eSBarry Smith     c->imax[i] = a->imax[i];
28542593348eSBarry Smith     c->ilen[i] = a->ilen[i];
28552593348eSBarry Smith   }
28562593348eSBarry Smith 
28572593348eSBarry Smith   /* allocate the matrix space */
2858a96a251dSBarry Smith   ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
2859c4992f7dSBarry Smith   c->singlemalloc = PETSC_TRUE;
2860c1ac3661SBarry Smith   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
2861b6490206SBarry Smith   if (mbs > 0) {
2862c1ac3661SBarry Smith     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
28632e8a6d31SBarry Smith     if (cpvalues == MAT_COPY_VALUES) {
2864549d3d68SSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
28652e8a6d31SBarry Smith     } else {
2866549d3d68SSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
28672593348eSBarry Smith     }
28682593348eSBarry Smith   }
28692593348eSBarry Smith   c->roworiented = a->roworiented;
28702593348eSBarry Smith   c->nonew       = a->nonew;
2871d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,A->rmap,C->rmap);CHKERRQ(ierr);
2872d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,A->cmap,C->cmap);CHKERRQ(ierr);
28735c9eb25fSBarry Smith   c->bs2         = a->bs2;
28745c9eb25fSBarry Smith   c->mbs         = a->mbs;
28755c9eb25fSBarry Smith   c->nbs         = a->nbs;
28762593348eSBarry Smith 
28772593348eSBarry Smith   if (a->diag) {
2878c1ac3661SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
287952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
2880b6490206SBarry Smith     for (i=0; i<mbs; i++) {
28812593348eSBarry Smith       c->diag[i] = a->diag[i];
28822593348eSBarry Smith     }
288398305bb5SBarry Smith   } else c->diag        = 0;
28842593348eSBarry Smith   c->nz                 = a->nz;
28852593348eSBarry Smith   c->maxnz              = a->maxnz;
28862593348eSBarry Smith   c->solve_work         = 0;
28877fc0212eSBarry Smith   c->mult_work          = 0;
2888e6b907acSBarry Smith   c->free_a             = PETSC_TRUE;
2889e6b907acSBarry Smith   c->free_ij            = PETSC_TRUE;
2890273d9f13SBarry Smith   C->preallocated       = PETSC_TRUE;
2891273d9f13SBarry Smith   C->assembled          = PETSC_TRUE;
289288e51ccdSHong Zhang 
289388e51ccdSHong Zhang   c->compressedrow.use     = a->compressedrow.use;
289488e51ccdSHong Zhang   c->compressedrow.nrows   = a->compressedrow.nrows;
289588e51ccdSHong Zhang   c->compressedrow.checked = a->compressedrow.checked;
289688e51ccdSHong Zhang   if ( a->compressedrow.checked && a->compressedrow.use){
289788e51ccdSHong Zhang     i = a->compressedrow.nrows;
289888e51ccdSHong Zhang     ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr);
289988e51ccdSHong Zhang     c->compressedrow.rindex = c->compressedrow.i + i + 1;
290088e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr);
290188e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr);
290288e51ccdSHong Zhang   } else {
290388e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
290488e51ccdSHong Zhang     c->compressedrow.i      = PETSC_NULL;
290588e51ccdSHong Zhang     c->compressedrow.rindex = PETSC_NULL;
290688e51ccdSHong Zhang   }
290788e51ccdSHong Zhang   C->same_nonzero = A->same_nonzero;
29087adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
29093a40ed3dSBarry Smith   PetscFunctionReturn(0);
29102593348eSBarry Smith }
29112593348eSBarry Smith 
29124a2ae208SSatish Balay #undef __FUNCT__
2913b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ"
2914b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
2915b24902e0SBarry Smith {
2916b24902e0SBarry Smith     PetscErrorCode ierr;
2917b24902e0SBarry Smith 
2918b24902e0SBarry Smith   PetscFunctionBegin;
29195c9eb25fSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr);
2920d0f46423SBarry Smith   ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr);
29215c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
2922*719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues);
2923b24902e0SBarry Smith   PetscFunctionReturn(0);
2924b24902e0SBarry Smith }
2925b24902e0SBarry Smith 
2926b24902e0SBarry Smith #undef __FUNCT__
29274a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ"
2928a313700dSBarry Smith PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, const MatType type,Mat *A)
29292593348eSBarry Smith {
2930b6490206SBarry Smith   Mat_SeqBAIJ    *a;
29312593348eSBarry Smith   Mat            B;
29326849ba73SBarry Smith   PetscErrorCode ierr;
2933b24ad042SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
2934c1ac3661SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
2935c1ac3661SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
2936c1ac3661SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
2937b24ad042SBarry Smith   PetscMPIInt    size;
2938b24ad042SBarry Smith   int            fd;
293987828ca2SBarry Smith   PetscScalar    *aa;
294019bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
29412593348eSBarry Smith 
29423a40ed3dSBarry Smith   PetscFunctionBegin;
29438c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
29448c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
29458c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2946de6a44a3SBarry Smith   bs2  = bs*bs;
2947b6490206SBarry Smith 
2948d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
294929bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
2950b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
29510752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
2952552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
29532593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
29542593348eSBarry Smith 
2955d64ed03dSBarry Smith   if (header[3] < 0) {
295629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
2957d64ed03dSBarry Smith   }
2958d64ed03dSBarry Smith 
295929bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
296035aab85fSBarry Smith 
296135aab85fSBarry Smith   /*
296235aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
296335aab85fSBarry Smith     divisible by the blocksize
296435aab85fSBarry Smith   */
2965b6490206SBarry Smith   mbs        = M/bs;
296635aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
296735aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
296835aab85fSBarry Smith   else                  mbs++;
296935aab85fSBarry Smith   if (extra_rows) {
29701e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
297135aab85fSBarry Smith   }
2972b6490206SBarry Smith 
29732593348eSBarry Smith   /* read in row lengths */
2974c1ac3661SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
29750752156aSBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
297635aab85fSBarry Smith   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
29772593348eSBarry Smith 
2978b6490206SBarry Smith   /* read in column indices */
2979c1ac3661SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
29800752156aSBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
298135aab85fSBarry Smith   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
2982b6490206SBarry Smith 
2983b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
2984c1ac3661SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr);
2985c1ac3661SBarry Smith   ierr     = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
2986c1ac3661SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
2987c1ac3661SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
298835aab85fSBarry Smith   masked   = mask + mbs;
2989b6490206SBarry Smith   rowcount = 0; nzcount = 0;
2990b6490206SBarry Smith   for (i=0; i<mbs; i++) {
299135aab85fSBarry Smith     nmask = 0;
2992b6490206SBarry Smith     for (j=0; j<bs; j++) {
2993b6490206SBarry Smith       kmax = rowlengths[rowcount];
2994b6490206SBarry Smith       for (k=0; k<kmax; k++) {
299535aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
299635aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
2997b6490206SBarry Smith       }
2998b6490206SBarry Smith       rowcount++;
2999b6490206SBarry Smith     }
300035aab85fSBarry Smith     browlengths[i] += nmask;
300135aab85fSBarry Smith     /* zero out the mask elements we set */
300235aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3003b6490206SBarry Smith   }
3004b6490206SBarry Smith 
30052593348eSBarry Smith   /* create our matrix */
3006f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&B);
3007f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);
300878ae41b4SKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
3009ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr);
3010b6490206SBarry Smith   a = (Mat_SeqBAIJ*)B->data;
30112593348eSBarry Smith 
30122593348eSBarry Smith   /* set matrix "i" values */
3013de6a44a3SBarry Smith   a->i[0] = 0;
3014b6490206SBarry Smith   for (i=1; i<= mbs; i++) {
3015b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
3016b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
30172593348eSBarry Smith   }
3018b6490206SBarry Smith   a->nz         = 0;
3019b6490206SBarry Smith   for (i=0; i<mbs; i++) a->nz += browlengths[i];
30202593348eSBarry Smith 
3021b6490206SBarry Smith   /* read in nonzero values */
302287828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
30230752156aSBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
302435aab85fSBarry Smith   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
3025b6490206SBarry Smith 
3026b6490206SBarry Smith   /* set "a" and "j" values into matrix */
3027b6490206SBarry Smith   nzcount = 0; jcount = 0;
3028b6490206SBarry Smith   for (i=0; i<mbs; i++) {
3029b6490206SBarry Smith     nzcountb = nzcount;
303035aab85fSBarry Smith     nmask    = 0;
3031b6490206SBarry Smith     for (j=0; j<bs; j++) {
3032b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3033b6490206SBarry Smith       for (k=0; k<kmax; k++) {
303435aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
303535aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
3036b6490206SBarry Smith       }
3037b6490206SBarry Smith     }
3038de6a44a3SBarry Smith     /* sort the masked values */
3039433994e6SBarry Smith     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3040de6a44a3SBarry Smith 
3041b6490206SBarry Smith     /* set "j" values into matrix */
3042b6490206SBarry Smith     maskcount = 1;
304335aab85fSBarry Smith     for (j=0; j<nmask; j++) {
304435aab85fSBarry Smith       a->j[jcount++]  = masked[j];
3045de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
3046b6490206SBarry Smith     }
3047b6490206SBarry Smith     /* set "a" values into matrix */
3048de6a44a3SBarry Smith     ishift = bs2*a->i[i];
3049b6490206SBarry Smith     for (j=0; j<bs; j++) {
3050b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3051b6490206SBarry Smith       for (k=0; k<kmax; k++) {
3052de6a44a3SBarry Smith         tmp       = jj[nzcountb]/bs ;
3053de6a44a3SBarry Smith         block     = mask[tmp] - 1;
3054de6a44a3SBarry Smith         point     = jj[nzcountb] - bs*tmp;
3055de6a44a3SBarry Smith         idx       = ishift + bs2*block + j + bs*point;
3056375fe846SBarry Smith         a->a[idx] = (MatScalar)aa[nzcountb++];
3057b6490206SBarry Smith       }
3058b6490206SBarry Smith     }
305935aab85fSBarry Smith     /* zero out the mask elements we set */
306035aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3061b6490206SBarry Smith   }
306229bbc08cSBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3063b6490206SBarry Smith 
3064606d414cSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3065606d414cSSatish Balay   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3066606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
3067606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
3068606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
3069b6490206SBarry Smith 
307078ae41b4SKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
307178ae41b4SKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
30729c01be13SBarry Smith   ierr = MatView_Private(B);CHKERRQ(ierr);
307378ae41b4SKris Buschelman 
307478ae41b4SKris Buschelman   *A = B;
30753a40ed3dSBarry Smith   PetscFunctionReturn(0);
30762593348eSBarry Smith }
30772593348eSBarry Smith 
30784a2ae208SSatish Balay #undef __FUNCT__
30794a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ"
3080273d9f13SBarry Smith /*@C
3081273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3082273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3083273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3084273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3085273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
30862593348eSBarry Smith 
3087273d9f13SBarry Smith    Collective on MPI_Comm
3088273d9f13SBarry Smith 
3089273d9f13SBarry Smith    Input Parameters:
3090273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3091273d9f13SBarry Smith .  bs - size of block
3092273d9f13SBarry Smith .  m - number of rows
3093273d9f13SBarry Smith .  n - number of columns
309435d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
309535d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
3096273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3097273d9f13SBarry Smith 
3098273d9f13SBarry Smith    Output Parameter:
3099273d9f13SBarry Smith .  A - the matrix
3100273d9f13SBarry Smith 
3101175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3102175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
3103175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
3104175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3105175b88e8SBarry Smith 
3106273d9f13SBarry Smith    Options Database Keys:
3107273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3108273d9f13SBarry Smith                      block calculations (much slower)
3109273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3110273d9f13SBarry Smith 
3111273d9f13SBarry Smith    Level: intermediate
3112273d9f13SBarry Smith 
3113273d9f13SBarry Smith    Notes:
3114d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3115d1be2dadSMatthew Knepley 
311649a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
311749a6f317SBarry Smith 
311835d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
311935d8aa7fSBarry Smith 
3120273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3121273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3122273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3123273d9f13SBarry Smith 
3124273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3125273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3126273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3127273d9f13SBarry Smith    matrices.
3128273d9f13SBarry Smith 
3129273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ()
3130273d9f13SBarry Smith @*/
3131be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3132273d9f13SBarry Smith {
3133dfbe8321SBarry Smith   PetscErrorCode ierr;
3134273d9f13SBarry Smith 
3135273d9f13SBarry Smith   PetscFunctionBegin;
3136f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3137f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3138273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3139ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3140273d9f13SBarry Smith   PetscFunctionReturn(0);
3141273d9f13SBarry Smith }
3142273d9f13SBarry Smith 
31434a2ae208SSatish Balay #undef __FUNCT__
31444a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation"
3145273d9f13SBarry Smith /*@C
3146273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3147273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3148273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3149273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3150273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3151273d9f13SBarry Smith 
3152273d9f13SBarry Smith    Collective on MPI_Comm
3153273d9f13SBarry Smith 
3154273d9f13SBarry Smith    Input Parameters:
3155273d9f13SBarry Smith +  A - the matrix
3156273d9f13SBarry Smith .  bs - size of block
3157273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3158273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
3159273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3160273d9f13SBarry Smith 
3161273d9f13SBarry Smith    Options Database Keys:
3162273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3163273d9f13SBarry Smith                      block calculations (much slower)
3164273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3165273d9f13SBarry Smith 
3166273d9f13SBarry Smith    Level: intermediate
3167273d9f13SBarry Smith 
3168273d9f13SBarry Smith    Notes:
316949a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
317049a6f317SBarry Smith 
3171aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3172aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3173aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3174aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3175aa95bbe8SBarry Smith 
3176273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3177273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3178273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3179273d9f13SBarry Smith 
3180273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3181273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3182273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3183273d9f13SBarry Smith    matrices.
3184273d9f13SBarry Smith 
3185aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo()
3186273d9f13SBarry Smith @*/
3187be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3188273d9f13SBarry Smith {
3189c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
3190273d9f13SBarry Smith 
3191273d9f13SBarry Smith   PetscFunctionBegin;
3192a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3193a23d5eceSKris Buschelman   if (f) {
3194a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
3195273d9f13SBarry Smith   }
3196273d9f13SBarry Smith   PetscFunctionReturn(0);
3197273d9f13SBarry Smith }
3198a1d92eedSBarry Smith 
3199c75a6043SHong Zhang #undef __FUNCT__
3200725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR"
3201725b52f3SLisandro Dalcin /*@C
3202725b52f3SLisandro Dalcin    MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format
3203725b52f3SLisandro Dalcin    (the default sequential PETSc format).
3204725b52f3SLisandro Dalcin 
3205725b52f3SLisandro Dalcin    Collective on MPI_Comm
3206725b52f3SLisandro Dalcin 
3207725b52f3SLisandro Dalcin    Input Parameters:
3208725b52f3SLisandro Dalcin +  A - the matrix
3209725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3210725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3211725b52f3SLisandro Dalcin -  v - optional values in the matrix
3212725b52f3SLisandro Dalcin 
3213725b52f3SLisandro Dalcin    Level: developer
3214725b52f3SLisandro Dalcin 
3215725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse
3216725b52f3SLisandro Dalcin 
3217725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3218725b52f3SLisandro Dalcin @*/
3219725b52f3SLisandro Dalcin PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3220725b52f3SLisandro Dalcin {
3221725b52f3SLisandro Dalcin   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
3222725b52f3SLisandro Dalcin 
3223725b52f3SLisandro Dalcin   PetscFunctionBegin;
3224725b52f3SLisandro Dalcin   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
3225725b52f3SLisandro Dalcin   if (f) {
3226725b52f3SLisandro Dalcin     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
3227725b52f3SLisandro Dalcin   }
3228725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3229725b52f3SLisandro Dalcin }
3230725b52f3SLisandro Dalcin 
3231725b52f3SLisandro Dalcin 
3232725b52f3SLisandro Dalcin #undef __FUNCT__
3233c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays"
3234c75a6043SHong Zhang /*@
3235c75a6043SHong Zhang      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements
3236c75a6043SHong Zhang               (upper triangular entries in CSR format) provided by the user.
3237c75a6043SHong Zhang 
3238c75a6043SHong Zhang      Collective on MPI_Comm
3239c75a6043SHong Zhang 
3240c75a6043SHong Zhang    Input Parameters:
3241c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3242c75a6043SHong Zhang .  bs - size of block
3243c75a6043SHong Zhang .  m - number of rows
3244c75a6043SHong Zhang .  n - number of columns
3245c75a6043SHong Zhang .  i - row indices
3246c75a6043SHong Zhang .  j - column indices
3247c75a6043SHong Zhang -  a - matrix values
3248c75a6043SHong Zhang 
3249c75a6043SHong Zhang    Output Parameter:
3250c75a6043SHong Zhang .  mat - the matrix
3251c75a6043SHong Zhang 
3252c75a6043SHong Zhang    Level: intermediate
3253c75a6043SHong Zhang 
3254c75a6043SHong Zhang    Notes:
3255c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3256c75a6043SHong Zhang     once the matrix is destroyed
3257c75a6043SHong Zhang 
3258c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3259c75a6043SHong Zhang 
3260c75a6043SHong Zhang        The i and j indices are 0 based
3261c75a6043SHong Zhang 
3262c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ()
3263c75a6043SHong Zhang 
3264c75a6043SHong Zhang @*/
3265c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat)
3266c75a6043SHong Zhang {
3267c75a6043SHong Zhang   PetscErrorCode ierr;
3268c75a6043SHong Zhang   PetscInt       ii;
3269c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3270c75a6043SHong Zhang 
3271c75a6043SHong Zhang   PetscFunctionBegin;
3272c75a6043SHong Zhang   if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
3273c75a6043SHong Zhang   if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3274c75a6043SHong Zhang 
3275c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3276c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3277c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3278c75a6043SHong Zhang   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3279c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3280c75a6043SHong Zhang   ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr);
3281c75a6043SHong Zhang 
3282c75a6043SHong Zhang   baij->i = i;
3283c75a6043SHong Zhang   baij->j = j;
3284c75a6043SHong Zhang   baij->a = a;
3285c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3286c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3287e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3288e6b907acSBarry Smith   baij->free_ij       = PETSC_FALSE;
3289c75a6043SHong Zhang 
3290c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3291c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3292c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3293c75a6043SHong Zhang     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3294c75a6043SHong Zhang #endif
3295c75a6043SHong Zhang   }
3296c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3297c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3298c75a6043SHong Zhang     if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3299c75a6043SHong Zhang     if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3300c75a6043SHong Zhang   }
3301c75a6043SHong Zhang #endif
3302c75a6043SHong Zhang 
3303c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3304c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3305c75a6043SHong Zhang   PetscFunctionReturn(0);
3306c75a6043SHong Zhang }
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