1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 32593348eSBarry Smith /* 4b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 52593348eSBarry Smith matrix storage format. 62593348eSBarry Smith */ 770f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h" 81a6a6d98SBarry Smith #include "src/inline/spops.h" 9325e03aeSBarry Smith #include "petscsys.h" /*I "petscmat.h" I*/ 103b547af2SSatish Balay 11b01c7715SBarry Smith #include "src/inline/ilu.h" 12b01c7715SBarry Smith 13b01c7715SBarry Smith #undef __FUNCT__ 1443516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal" 15bc08b0f1SBarry Smith /*@ 1643516a2dSKris Buschelman MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries. 1743516a2dSKris Buschelman 1843516a2dSKris Buschelman Collective on Mat 1943516a2dSKris Buschelman 2043516a2dSKris Buschelman Input Parameters: 2143516a2dSKris Buschelman . mat - the matrix 2243516a2dSKris Buschelman 2343516a2dSKris Buschelman Level: advanced 2443516a2dSKris Buschelman @*/ 2546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat) 2643516a2dSKris Buschelman { 2743516a2dSKris Buschelman PetscErrorCode ierr,(*f)(Mat); 2843516a2dSKris Buschelman 2943516a2dSKris Buschelman PetscFunctionBegin; 3043516a2dSKris Buschelman PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 3143516a2dSKris Buschelman if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 3243516a2dSKris Buschelman if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 3343516a2dSKris Buschelman 3443516a2dSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr); 3543516a2dSKris Buschelman if (f) { 3643516a2dSKris Buschelman ierr = (*f)(mat);CHKERRQ(ierr); 3743516a2dSKris Buschelman } else { 3843516a2dSKris Buschelman SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ."); 3943516a2dSKris Buschelman } 4043516a2dSKris Buschelman PetscFunctionReturn(0); 4143516a2dSKris Buschelman } 4243516a2dSKris Buschelman 4343516a2dSKris Buschelman EXTERN_C_BEGIN 4443516a2dSKris Buschelman #undef __FUNCT__ 45b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ" 4646129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A) 47b01c7715SBarry Smith { 48b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*) A->data; 496849ba73SBarry Smith PetscErrorCode ierr; 50d0f46423SBarry Smith PetscInt *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs; 5197e5c40aSBarry Smith MatScalar *v = a->a,*odiag,*diag,*mdiag; 5262bba022SBarry Smith PetscReal shift = 0.0; 53b01c7715SBarry Smith 54b01c7715SBarry Smith PetscFunctionBegin; 55b01c7715SBarry Smith if (a->idiagvalid) PetscFunctionReturn(0); 56b01c7715SBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 57b01c7715SBarry Smith diag_offset = a->diag; 58b01c7715SBarry Smith if (!a->idiag) { 59b01c7715SBarry Smith ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr); 60b01c7715SBarry Smith } 61b01c7715SBarry Smith diag = a->idiag; 62b01c7715SBarry Smith mdiag = a->idiag+bs*bs*mbs; 63b01c7715SBarry Smith /* factor and invert each block */ 64521d7252SBarry Smith switch (bs){ 65b01c7715SBarry Smith case 2: 66b01c7715SBarry Smith for (i=0; i<mbs; i++) { 67b01c7715SBarry Smith odiag = v + 4*diag_offset[i]; 68b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 69b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 7062bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr); 71b01c7715SBarry Smith diag += 4; 72b01c7715SBarry Smith mdiag += 4; 73b01c7715SBarry Smith } 74b01c7715SBarry Smith break; 75b01c7715SBarry Smith case 3: 76b01c7715SBarry Smith for (i=0; i<mbs; i++) { 77b01c7715SBarry Smith odiag = v + 9*diag_offset[i]; 78b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 79b01c7715SBarry Smith diag[4] = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7]; 80b01c7715SBarry Smith diag[8] = odiag[8]; 81b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 82b01c7715SBarry Smith mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7]; 83b01c7715SBarry Smith mdiag[8] = odiag[8]; 8462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr); 85b01c7715SBarry Smith diag += 9; 86b01c7715SBarry Smith mdiag += 9; 87b01c7715SBarry Smith } 88b01c7715SBarry Smith break; 89b01c7715SBarry Smith case 4: 90b01c7715SBarry Smith for (i=0; i<mbs; i++) { 91b01c7715SBarry Smith odiag = v + 16*diag_offset[i]; 92b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 93b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 9462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr); 95b01c7715SBarry Smith diag += 16; 96b01c7715SBarry Smith mdiag += 16; 97b01c7715SBarry Smith } 98b01c7715SBarry Smith break; 99b01c7715SBarry Smith case 5: 100b01c7715SBarry Smith for (i=0; i<mbs; i++) { 101b01c7715SBarry Smith odiag = v + 25*diag_offset[i]; 102b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 103b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 10462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr); 105b01c7715SBarry Smith diag += 25; 106b01c7715SBarry Smith mdiag += 25; 107b01c7715SBarry Smith } 108b01c7715SBarry Smith break; 109b01c7715SBarry Smith default: 110521d7252SBarry Smith SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs); 111b01c7715SBarry Smith } 112b01c7715SBarry Smith a->idiagvalid = PETSC_TRUE; 113b01c7715SBarry Smith PetscFunctionReturn(0); 114b01c7715SBarry Smith } 11543516a2dSKris Buschelman EXTERN_C_END 116b01c7715SBarry Smith 117b01c7715SBarry Smith #undef __FUNCT__ 1186d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1" 1196d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1206d3beeddSMatthew Knepley { 1216d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1226d3beeddSMatthew Knepley PetscScalar *x,x1,s1; 123dd6ea824SBarry Smith const PetscScalar *b; 124dd6ea824SBarry Smith const MatScalar *aa = a->a, *idiag,*mdiag,*v; 1256d3beeddSMatthew Knepley PetscErrorCode ierr; 1266d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 1276d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 1286d3beeddSMatthew Knepley 1296d3beeddSMatthew Knepley PetscFunctionBegin; 1306d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 1316d3beeddSMatthew Knepley its = its*lits; 1326d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 1336d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 1346d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 1356d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 1366d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 1376d3beeddSMatthew Knepley 1386d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 1396d3beeddSMatthew Knepley 1406d3beeddSMatthew Knepley diag = a->diag; 1416d3beeddSMatthew Knepley idiag = a->idiag; 1426d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1436d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 1446d3beeddSMatthew Knepley 1456d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 1466d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 1476d3beeddSMatthew Knepley x[0] = b[0]*idiag[0]; 1486d3beeddSMatthew Knepley i2 = 1; 1496d3beeddSMatthew Knepley idiag += 1; 1506d3beeddSMatthew Knepley for (i=1; i<m; i++) { 1516d3beeddSMatthew Knepley v = aa + ai[i]; 1526d3beeddSMatthew Knepley vi = aj + ai[i]; 1536d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 1546d3beeddSMatthew Knepley s1 = b[i2]; 1556d3beeddSMatthew Knepley while (nz--) { 1566d3beeddSMatthew Knepley idx = (*vi++); 1576d3beeddSMatthew Knepley x1 = x[idx]; 1586d3beeddSMatthew Knepley s1 -= v[0]*x1; 1596d3beeddSMatthew Knepley v += 1; 1606d3beeddSMatthew Knepley } 1616d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 1626d3beeddSMatthew Knepley idiag += 1; 1636d3beeddSMatthew Knepley i2 += 1; 1646d3beeddSMatthew Knepley } 1656d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 1666d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1676d3beeddSMatthew Knepley } 1686d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 1696d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1706d3beeddSMatthew Knepley i2 = 0; 1716d3beeddSMatthew Knepley mdiag = a->idiag+a->mbs; 1726d3beeddSMatthew Knepley for (i=0; i<m; i++) { 1736d3beeddSMatthew Knepley x1 = x[i2]; 1746d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1; 1756d3beeddSMatthew Knepley mdiag += 1; 1766d3beeddSMatthew Knepley i2 += 1; 1776d3beeddSMatthew Knepley } 1786d3beeddSMatthew Knepley ierr = PetscLogFlops(m);CHKERRQ(ierr); 1796d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 180d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 1816d3beeddSMatthew Knepley } 1826d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 1836d3beeddSMatthew Knepley idiag = a->idiag+a->mbs - 1; 1846d3beeddSMatthew Knepley i2 = m - 1; 1856d3beeddSMatthew Knepley x1 = x[i2]; 1866d3beeddSMatthew Knepley x[i2] = idiag[0]*x1; 1876d3beeddSMatthew Knepley idiag -= 1; 1886d3beeddSMatthew Knepley i2 -= 1; 1896d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 1906d3beeddSMatthew Knepley v = aa + (diag[i]+1); 1916d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 1926d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 1936d3beeddSMatthew Knepley s1 = x[i2]; 1946d3beeddSMatthew Knepley while (nz--) { 1956d3beeddSMatthew Knepley idx = (*vi++); 1966d3beeddSMatthew Knepley x1 = x[idx]; 1976d3beeddSMatthew Knepley s1 -= v[0]*x1; 1986d3beeddSMatthew Knepley v += 1; 1996d3beeddSMatthew Knepley } 2006d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 2016d3beeddSMatthew Knepley idiag -= 2; 2026d3beeddSMatthew Knepley i2 -= 1; 2036d3beeddSMatthew Knepley } 2046d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 2056d3beeddSMatthew Knepley } 2066d3beeddSMatthew Knepley } else { 2076d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 2086d3beeddSMatthew Knepley } 2096d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2106d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 2116d3beeddSMatthew Knepley PetscFunctionReturn(0); 2126d3beeddSMatthew Knepley } 2136d3beeddSMatthew Knepley 2146d3beeddSMatthew Knepley #undef __FUNCT__ 215b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2" 216c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 217b01c7715SBarry Smith { 218b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 219b01c7715SBarry Smith PetscScalar *x,x1,x2,s1,s2; 220dd6ea824SBarry Smith const PetscScalar *b; 221dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 222dfbe8321SBarry Smith PetscErrorCode ierr; 223c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 224c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 225b01c7715SBarry Smith 226b01c7715SBarry Smith PetscFunctionBegin; 22751f519a2SBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 228b01c7715SBarry Smith its = its*lits; 22977431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 230b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 231b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 23271f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 233b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 234b01c7715SBarry Smith 235b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 236b01c7715SBarry Smith 237b01c7715SBarry Smith diag = a->diag; 238b01c7715SBarry Smith idiag = a->idiag; 2391ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2401ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 241b01c7715SBarry Smith 242b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 243b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 244b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[2]; 245b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[3]; 246b01c7715SBarry Smith i2 = 2; 247b01c7715SBarry Smith idiag += 4; 248b01c7715SBarry Smith for (i=1; i<m; i++) { 249b01c7715SBarry Smith v = aa + 4*ai[i]; 250b01c7715SBarry Smith vi = aj + ai[i]; 251b01c7715SBarry Smith nz = diag[i] - ai[i]; 252b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; 253b01c7715SBarry Smith while (nz--) { 254b01c7715SBarry Smith idx = 2*(*vi++); 255b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 256b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 257b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 258b01c7715SBarry Smith v += 4; 259b01c7715SBarry Smith } 260b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 261b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 262b01c7715SBarry Smith idiag += 4; 263b01c7715SBarry Smith i2 += 2; 264b01c7715SBarry Smith } 265b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 266efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 267b01c7715SBarry Smith } 268b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 269b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 270b01c7715SBarry Smith i2 = 0; 271b01c7715SBarry Smith mdiag = a->idiag+4*a->mbs; 272b01c7715SBarry Smith for (i=0; i<m; i++) { 273b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 274b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[2]*x2; 275b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2; 276b01c7715SBarry Smith mdiag += 4; 277b01c7715SBarry Smith i2 += 2; 278b01c7715SBarry Smith } 279efee365bSSatish Balay ierr = PetscLogFlops(6*m);CHKERRQ(ierr); 280b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 281d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 282b01c7715SBarry Smith } 283b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 284b01c7715SBarry Smith idiag = a->idiag+4*a->mbs - 4; 285b01c7715SBarry Smith i2 = 2*m - 2; 286b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 287b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[2]*x2; 288b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[3]*x2; 289b01c7715SBarry Smith idiag -= 4; 290b01c7715SBarry Smith i2 -= 2; 291b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 292b01c7715SBarry Smith v = aa + 4*(diag[i]+1); 293b01c7715SBarry Smith vi = aj + diag[i] + 1; 294b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 295b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; 296b01c7715SBarry Smith while (nz--) { 297b01c7715SBarry Smith idx = 2*(*vi++); 298b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 299b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 300b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 301b01c7715SBarry Smith v += 4; 302b01c7715SBarry Smith } 303b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 304b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 305b01c7715SBarry Smith idiag -= 4; 306b01c7715SBarry Smith i2 -= 2; 307b01c7715SBarry Smith } 308efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 309b01c7715SBarry Smith } 310b01c7715SBarry Smith } else { 311634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 312b01c7715SBarry Smith } 3131ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3141ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 315b01c7715SBarry Smith PetscFunctionReturn(0); 316b01c7715SBarry Smith } 317b01c7715SBarry Smith 318b01c7715SBarry Smith #undef __FUNCT__ 319b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3" 320c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 321b01c7715SBarry Smith { 322b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 323b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,s1,s2,s3; 324dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 325dd6ea824SBarry Smith const PetscScalar *b; 326dfbe8321SBarry Smith PetscErrorCode ierr; 327c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 328c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 329b01c7715SBarry Smith 330b01c7715SBarry Smith PetscFunctionBegin; 331b01c7715SBarry Smith its = its*lits; 33271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 33377431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 334b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 335b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 33671f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 337b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 338b01c7715SBarry Smith 339b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 340b01c7715SBarry Smith 341b01c7715SBarry Smith diag = a->diag; 342b01c7715SBarry Smith idiag = a->idiag; 3431ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3441ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 345b01c7715SBarry Smith 346b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 347b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 348b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6]; 349b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7]; 350b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8]; 351b01c7715SBarry Smith i2 = 3; 352b01c7715SBarry Smith idiag += 9; 353b01c7715SBarry Smith for (i=1; i<m; i++) { 354b01c7715SBarry Smith v = aa + 9*ai[i]; 355b01c7715SBarry Smith vi = aj + ai[i]; 356b01c7715SBarry Smith nz = diag[i] - ai[i]; 357b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; 358b01c7715SBarry Smith while (nz--) { 359b01c7715SBarry Smith idx = 3*(*vi++); 360b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; 361b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 362b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 363b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 364b01c7715SBarry Smith v += 9; 365b01c7715SBarry Smith } 366b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 367b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 368b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 369b01c7715SBarry Smith idiag += 9; 370b01c7715SBarry Smith i2 += 3; 371b01c7715SBarry Smith } 372b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 373efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 374b01c7715SBarry Smith } 375b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 376b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 377b01c7715SBarry Smith i2 = 0; 378b01c7715SBarry Smith mdiag = a->idiag+9*a->mbs; 379b01c7715SBarry Smith for (i=0; i<m; i++) { 380b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 381b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3; 382b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3; 383b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3; 384b01c7715SBarry Smith mdiag += 9; 385b01c7715SBarry Smith i2 += 3; 386b01c7715SBarry Smith } 387efee365bSSatish Balay ierr = PetscLogFlops(15*m);CHKERRQ(ierr); 388b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 389d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 390b01c7715SBarry Smith } 391b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 392b01c7715SBarry Smith idiag = a->idiag+9*a->mbs - 9; 393b01c7715SBarry Smith i2 = 3*m - 3; 394b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 395b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3; 396b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3; 397b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3; 398b01c7715SBarry Smith idiag -= 9; 399b01c7715SBarry Smith i2 -= 3; 400b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 401b01c7715SBarry Smith v = aa + 9*(diag[i]+1); 402b01c7715SBarry Smith vi = aj + diag[i] + 1; 403b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 404b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; 405b01c7715SBarry Smith while (nz--) { 406b01c7715SBarry Smith idx = 3*(*vi++); 407b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; 408b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 409b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 410b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 411b01c7715SBarry Smith v += 9; 412b01c7715SBarry Smith } 413b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 414b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 415b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 416b01c7715SBarry Smith idiag -= 9; 417b01c7715SBarry Smith i2 -= 3; 418b01c7715SBarry Smith } 419efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 420b01c7715SBarry Smith } 421b01c7715SBarry Smith } else { 422634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 423b01c7715SBarry Smith } 4241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 4251ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 426b01c7715SBarry Smith PetscFunctionReturn(0); 427b01c7715SBarry Smith } 428b01c7715SBarry Smith 429b01c7715SBarry Smith #undef __FUNCT__ 430b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4" 431c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 432b01c7715SBarry Smith { 433b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 434b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,s1,s2,s3,s4; 435dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 436dd6ea824SBarry Smith const PetscScalar *b; 437dfbe8321SBarry Smith PetscErrorCode ierr; 438c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 439c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 440b01c7715SBarry Smith 441b01c7715SBarry Smith PetscFunctionBegin; 44271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 443b01c7715SBarry Smith its = its*lits; 44477431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 445b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 446b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 44771f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 448b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 449b01c7715SBarry Smith 450b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 451b01c7715SBarry Smith 452b01c7715SBarry Smith diag = a->diag; 453b01c7715SBarry Smith idiag = a->idiag; 4541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4551ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 456b01c7715SBarry Smith 457b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 458b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 459b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8] + b[3]*idiag[12]; 460b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9] + b[3]*idiag[13]; 461b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14]; 462b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15]; 463b01c7715SBarry Smith i2 = 4; 464b01c7715SBarry Smith idiag += 16; 465b01c7715SBarry Smith for (i=1; i<m; i++) { 466b01c7715SBarry Smith v = aa + 16*ai[i]; 467b01c7715SBarry Smith vi = aj + ai[i]; 468b01c7715SBarry Smith nz = diag[i] - ai[i]; 469b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; 470b01c7715SBarry Smith while (nz--) { 471b01c7715SBarry Smith idx = 4*(*vi++); 472b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 473b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 474b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 475b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 476b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 477b01c7715SBarry Smith v += 16; 478b01c7715SBarry Smith } 479b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 480b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 481b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 482b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 483b01c7715SBarry Smith idiag += 16; 484b01c7715SBarry Smith i2 += 4; 485b01c7715SBarry Smith } 486b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 487efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 488b01c7715SBarry Smith } 489b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 490b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 491b01c7715SBarry Smith i2 = 0; 492b01c7715SBarry Smith mdiag = a->idiag+16*a->mbs; 493b01c7715SBarry Smith for (i=0; i<m; i++) { 494b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 495b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3 + mdiag[12]*x4; 496b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3 + mdiag[13]*x4; 497b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4; 498b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4; 499b01c7715SBarry Smith mdiag += 16; 500b01c7715SBarry Smith i2 += 4; 501b01c7715SBarry Smith } 502efee365bSSatish Balay ierr = PetscLogFlops(28*m);CHKERRQ(ierr); 503b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 504d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 505b01c7715SBarry Smith } 506b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 507b01c7715SBarry Smith idiag = a->idiag+16*a->mbs - 16; 508b01c7715SBarry Smith i2 = 4*m - 4; 509b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 510b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3 + idiag[12]*x4; 511b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3 + idiag[13]*x4; 512b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4; 513b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4; 514b01c7715SBarry Smith idiag -= 16; 515b01c7715SBarry Smith i2 -= 4; 516b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 517b01c7715SBarry Smith v = aa + 16*(diag[i]+1); 518b01c7715SBarry Smith vi = aj + diag[i] + 1; 519b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 520b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; 521b01c7715SBarry Smith while (nz--) { 522b01c7715SBarry Smith idx = 4*(*vi++); 523b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 524b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 525b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 526b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 527b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 528b01c7715SBarry Smith v += 16; 529b01c7715SBarry Smith } 530b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 531b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 532b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 533b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 534b01c7715SBarry Smith idiag -= 16; 535b01c7715SBarry Smith i2 -= 4; 536b01c7715SBarry Smith } 537efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 538b01c7715SBarry Smith } 539b01c7715SBarry Smith } else { 540634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 541b01c7715SBarry Smith } 5421ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5431ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 544b01c7715SBarry Smith PetscFunctionReturn(0); 545b01c7715SBarry Smith } 546b01c7715SBarry Smith 547b01c7715SBarry Smith #undef __FUNCT__ 548b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5" 549c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 550b01c7715SBarry Smith { 551b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 552b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5; 553dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 554dd6ea824SBarry Smith const PetscScalar *b; 555dfbe8321SBarry Smith PetscErrorCode ierr; 556c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 557c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 558b01c7715SBarry Smith 559b01c7715SBarry Smith PetscFunctionBegin; 56071f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 561b01c7715SBarry Smith its = its*lits; 56277431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 563b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 564b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 56571f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 566b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 567b01c7715SBarry Smith 568b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 569b01c7715SBarry Smith 570b01c7715SBarry Smith diag = a->diag; 571b01c7715SBarry Smith idiag = a->idiag; 5721ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5731ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 574b01c7715SBarry Smith 575b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 576b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 577b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20]; 578b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21]; 579b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22]; 580b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23]; 581b01c7715SBarry Smith x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24]; 582b01c7715SBarry Smith i2 = 5; 583b01c7715SBarry Smith idiag += 25; 584b01c7715SBarry Smith for (i=1; i<m; i++) { 585b01c7715SBarry Smith v = aa + 25*ai[i]; 586b01c7715SBarry Smith vi = aj + ai[i]; 587b01c7715SBarry Smith nz = diag[i] - ai[i]; 588b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; 589b01c7715SBarry Smith while (nz--) { 590b01c7715SBarry Smith idx = 5*(*vi++); 591b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 592b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 593b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 594b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 595b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 596b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 597b01c7715SBarry Smith v += 25; 598b01c7715SBarry Smith } 599b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 600b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 601b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 602b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 603b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 604b01c7715SBarry Smith idiag += 25; 605b01c7715SBarry Smith i2 += 5; 606b01c7715SBarry Smith } 607b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 608efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 609b01c7715SBarry Smith } 610b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 611b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 612b01c7715SBarry Smith i2 = 0; 613b01c7715SBarry Smith mdiag = a->idiag+25*a->mbs; 614b01c7715SBarry Smith for (i=0; i<m; i++) { 615b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 616b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5; 617b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5; 618b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5; 619b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5; 620b01c7715SBarry Smith x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5; 621b01c7715SBarry Smith mdiag += 25; 622b01c7715SBarry Smith i2 += 5; 623b01c7715SBarry Smith } 624efee365bSSatish Balay ierr = PetscLogFlops(45*m);CHKERRQ(ierr); 625b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 626d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 627b01c7715SBarry Smith } 628b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 629b01c7715SBarry Smith idiag = a->idiag+25*a->mbs - 25; 630b01c7715SBarry Smith i2 = 5*m - 5; 631b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 632b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5; 633b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5; 634b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5; 635b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5; 636b01c7715SBarry Smith x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5; 637b01c7715SBarry Smith idiag -= 25; 638b01c7715SBarry Smith i2 -= 5; 639b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 640b01c7715SBarry Smith v = aa + 25*(diag[i]+1); 641b01c7715SBarry Smith vi = aj + diag[i] + 1; 642b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 643b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; 644b01c7715SBarry Smith while (nz--) { 645b01c7715SBarry Smith idx = 5*(*vi++); 646b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 647b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 648b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 649b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 650b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 651b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 652b01c7715SBarry Smith v += 25; 653b01c7715SBarry Smith } 654b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 655b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 656b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 657b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 658b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 659b01c7715SBarry Smith idiag -= 25; 660b01c7715SBarry Smith i2 -= 5; 661b01c7715SBarry Smith } 662efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 663b01c7715SBarry Smith } 664b01c7715SBarry Smith } else { 665634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 666b01c7715SBarry Smith } 6671ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 6681ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 669b01c7715SBarry Smith PetscFunctionReturn(0); 670b01c7715SBarry Smith } 671b01c7715SBarry Smith 6726d3beeddSMatthew Knepley #undef __FUNCT__ 6736d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6" 6746d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 6756d3beeddSMatthew Knepley { 6766d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 6776d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6; 678dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 679dd6ea824SBarry Smith const PetscScalar *b; 6806d3beeddSMatthew Knepley PetscErrorCode ierr; 6816d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 6826d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 6836d3beeddSMatthew Knepley 6846d3beeddSMatthew Knepley PetscFunctionBegin; 6856d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 6866d3beeddSMatthew Knepley its = its*lits; 6876d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 6886d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 6896d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 6906d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 6916d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 6926d3beeddSMatthew Knepley 6936d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 6946d3beeddSMatthew Knepley 6956d3beeddSMatthew Knepley diag = a->diag; 6966d3beeddSMatthew Knepley idiag = a->idiag; 6976d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 6986d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 6996d3beeddSMatthew Knepley 7006d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 7016d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 7026d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[6] + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30]; 7036d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[7] + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31]; 7046d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[8] + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32]; 7056d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[9] + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33]; 7066d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34]; 7076d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35]; 7086d3beeddSMatthew Knepley i2 = 6; 7096d3beeddSMatthew Knepley idiag += 36; 7106d3beeddSMatthew Knepley for (i=1; i<m; i++) { 7116d3beeddSMatthew Knepley v = aa + 36*ai[i]; 7126d3beeddSMatthew Knepley vi = aj + ai[i]; 7136d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 7146d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; 7156d3beeddSMatthew Knepley while (nz--) { 7166d3beeddSMatthew Knepley idx = 6*(*vi++); 7176d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7186d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7196d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7206d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7216d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7226d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7236d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7246d3beeddSMatthew Knepley v += 36; 7256d3beeddSMatthew Knepley } 7266d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7276d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7286d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7296d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7306d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7316d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7326d3beeddSMatthew Knepley idiag += 36; 7336d3beeddSMatthew Knepley i2 += 6; 7346d3beeddSMatthew Knepley } 7356d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 7366d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7376d3beeddSMatthew Knepley } 7386d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 7396d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 7406d3beeddSMatthew Knepley i2 = 0; 7416d3beeddSMatthew Knepley mdiag = a->idiag+36*a->mbs; 7426d3beeddSMatthew Knepley for (i=0; i<m; i++) { 7436d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7446d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[6]*x2 + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6; 7456d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2 + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6; 7466d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2 + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6; 7476d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2 + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6; 7486d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6; 7496d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6; 7506d3beeddSMatthew Knepley mdiag += 36; 7516d3beeddSMatthew Knepley i2 += 6; 7526d3beeddSMatthew Knepley } 7536d3beeddSMatthew Knepley ierr = PetscLogFlops(60*m);CHKERRQ(ierr); 7546d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 755d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 7566d3beeddSMatthew Knepley } 7576d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 7586d3beeddSMatthew Knepley idiag = a->idiag+36*a->mbs - 36; 7596d3beeddSMatthew Knepley i2 = 6*m - 6; 7606d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7616d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[6]*x2 + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6; 7626d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[7]*x2 + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6; 7636d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[8]*x2 + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6; 7646d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[9]*x2 + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6; 7656d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6; 7666d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6; 7676d3beeddSMatthew Knepley idiag -= 36; 7686d3beeddSMatthew Knepley i2 -= 6; 7696d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 7706d3beeddSMatthew Knepley v = aa + 36*(diag[i]+1); 7716d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 7726d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 7736d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; 7746d3beeddSMatthew Knepley while (nz--) { 7756d3beeddSMatthew Knepley idx = 6*(*vi++); 7766d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7776d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7786d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7796d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7806d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7816d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7826d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7836d3beeddSMatthew Knepley v += 36; 7846d3beeddSMatthew Knepley } 7856d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7866d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7876d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7886d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7896d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7906d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7916d3beeddSMatthew Knepley idiag -= 36; 7926d3beeddSMatthew Knepley i2 -= 6; 7936d3beeddSMatthew Knepley } 7946d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7956d3beeddSMatthew Knepley } 7966d3beeddSMatthew Knepley } else { 7976d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 7986d3beeddSMatthew Knepley } 7996d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 8006d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8016d3beeddSMatthew Knepley PetscFunctionReturn(0); 8026d3beeddSMatthew Knepley } 8036d3beeddSMatthew Knepley 8046d3beeddSMatthew Knepley #undef __FUNCT__ 8056d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7" 8066d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 8076d3beeddSMatthew Knepley { 8086d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 8096d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7; 810dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 811dd6ea824SBarry Smith const PetscScalar *b; 8126d3beeddSMatthew Knepley PetscErrorCode ierr; 8136d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 8146d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 8156d3beeddSMatthew Knepley 8166d3beeddSMatthew Knepley PetscFunctionBegin; 8176d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 8186d3beeddSMatthew Knepley its = its*lits; 8196d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 8206d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 8216d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 8226d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 8236d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 8246d3beeddSMatthew Knepley 8256d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 8266d3beeddSMatthew Knepley 8276d3beeddSMatthew Knepley diag = a->diag; 8286d3beeddSMatthew Knepley idiag = a->idiag; 8296d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 8306d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8316d3beeddSMatthew Knepley 8326d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 8336d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 8346d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[7] + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42]; 8356d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[8] + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43]; 8366d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[9] + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44]; 8376d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45]; 8386d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46]; 8396d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47]; 8406d3beeddSMatthew Knepley x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48]; 8416d3beeddSMatthew Knepley i2 = 7; 8426d3beeddSMatthew Knepley idiag += 49; 8436d3beeddSMatthew Knepley for (i=1; i<m; i++) { 8446d3beeddSMatthew Knepley v = aa + 49*ai[i]; 8456d3beeddSMatthew Knepley vi = aj + ai[i]; 8466d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 8476d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6]; 8486d3beeddSMatthew Knepley while (nz--) { 8496d3beeddSMatthew Knepley idx = 7*(*vi++); 8506d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 8516d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 8526d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 8536d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 8546d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 8556d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 8566d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 8576d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 8586d3beeddSMatthew Knepley v += 49; 8596d3beeddSMatthew Knepley } 8606d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 8616d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 8626d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 8636d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 8646d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 8656d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 8666d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 8676d3beeddSMatthew Knepley idiag += 49; 8686d3beeddSMatthew Knepley i2 += 7; 8696d3beeddSMatthew Knepley } 8706d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 8716d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 8726d3beeddSMatthew Knepley } 8736d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 8746d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 8756d3beeddSMatthew Knepley i2 = 0; 8766d3beeddSMatthew Knepley mdiag = a->idiag+49*a->mbs; 8776d3beeddSMatthew Knepley for (i=0; i<m; i++) { 8786d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8796d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[7]*x2 + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7; 8806d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2 + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7; 8816d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2 + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7; 8826d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7; 8836d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7; 8846d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7; 8856d3beeddSMatthew Knepley x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7; 8866d3beeddSMatthew Knepley mdiag += 36; 8876d3beeddSMatthew Knepley i2 += 6; 8886d3beeddSMatthew Knepley } 8896d3beeddSMatthew Knepley ierr = PetscLogFlops(93*m);CHKERRQ(ierr); 8906d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 891d0f46423SBarry Smith ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 8926d3beeddSMatthew Knepley } 8936d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 8946d3beeddSMatthew Knepley idiag = a->idiag+49*a->mbs - 49; 8956d3beeddSMatthew Knepley i2 = 7*m - 7; 8966d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8976d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[7]*x2 + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7; 8986d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[8]*x2 + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7; 8996d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[9]*x2 + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7; 9006d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7; 9016d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7; 9026d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7; 9036d3beeddSMatthew Knepley x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7; 9046d3beeddSMatthew Knepley idiag -= 49; 9056d3beeddSMatthew Knepley i2 -= 7; 9066d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 9076d3beeddSMatthew Knepley v = aa + 49*(diag[i]+1); 9086d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 9096d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 9106d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6]; 9116d3beeddSMatthew Knepley while (nz--) { 9126d3beeddSMatthew Knepley idx = 7*(*vi++); 9136d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 9146d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 9156d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 9166d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 9176d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 9186d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 9196d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 9206d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 9216d3beeddSMatthew Knepley v += 49; 9226d3beeddSMatthew Knepley } 9236d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 9246d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 9256d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 9266d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 9276d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 9286d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 9296d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 9306d3beeddSMatthew Knepley idiag -= 49; 9316d3beeddSMatthew Knepley i2 -= 7; 9326d3beeddSMatthew Knepley } 9336d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 9346d3beeddSMatthew Knepley } 9356d3beeddSMatthew Knepley } else { 9366d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 9376d3beeddSMatthew Knepley } 9386d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 9396d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 9406d3beeddSMatthew Knepley PetscFunctionReturn(0); 9416d3beeddSMatthew Knepley } 9426d3beeddSMatthew Knepley 943af674e45SBarry Smith /* 94481824310SBarry Smith Special version for direct calls from Fortran (Used in PETSc-fun3d) 945af674e45SBarry Smith */ 946af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 947af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 948af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 949af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4 950af674e45SBarry Smith #endif 951af674e45SBarry Smith 9529c8c1041SBarry Smith EXTERN_C_BEGIN 953af674e45SBarry Smith #undef __FUNCT__ 954af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_" 955be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[]) 956af674e45SBarry Smith { 957af674e45SBarry Smith Mat A = *AA; 958af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 959c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn; 960c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 96117ec6a02SBarry Smith PetscInt *aj=a->j,stepval,lastcol = -1; 962f15d580aSBarry Smith const PetscScalar *value = v; 9634bb09213Spetsc MatScalar *ap,*aa = a->a,*bap; 964af674e45SBarry Smith 965af674e45SBarry Smith PetscFunctionBegin; 966d0f46423SBarry Smith if (A->rmap->bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4"); 967af674e45SBarry Smith stepval = (n-1)*4; 968af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 969af674e45SBarry Smith row = im[k]; 970af674e45SBarry Smith rp = aj + ai[row]; 971af674e45SBarry Smith ap = aa + 16*ai[row]; 972af674e45SBarry Smith nrow = ailen[row]; 973af674e45SBarry Smith low = 0; 97417ec6a02SBarry Smith high = nrow; 975af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 976af674e45SBarry Smith col = in[l]; 97717ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 97817ec6a02SBarry Smith lastcol = col; 9791e3347e8SBarry Smith value = v + k*(stepval+4 + l)*4; 980af674e45SBarry Smith while (high-low > 7) { 981af674e45SBarry Smith t = (low+high)/2; 982af674e45SBarry Smith if (rp[t] > col) high = t; 983af674e45SBarry Smith else low = t; 984af674e45SBarry Smith } 985af674e45SBarry Smith for (i=low; i<high; i++) { 986af674e45SBarry Smith if (rp[i] > col) break; 987af674e45SBarry Smith if (rp[i] == col) { 988af674e45SBarry Smith bap = ap + 16*i; 989af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 990af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 991af674e45SBarry Smith bap[jj] += *value++; 992af674e45SBarry Smith } 993af674e45SBarry Smith } 994af674e45SBarry Smith goto noinsert2; 995af674e45SBarry Smith } 996af674e45SBarry Smith } 997af674e45SBarry Smith N = nrow++ - 1; 99817ec6a02SBarry Smith high++; /* added new column index thus must search to one higher than before */ 999af674e45SBarry Smith /* shift up all the later entries in this row */ 1000af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1001af674e45SBarry Smith rp[ii+1] = rp[ii]; 1002a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1003af674e45SBarry Smith } 1004af674e45SBarry Smith if (N >= i) { 1005a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1006af674e45SBarry Smith } 1007af674e45SBarry Smith rp[i] = col; 1008af674e45SBarry Smith bap = ap + 16*i; 1009af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 1010af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 1011af674e45SBarry Smith bap[jj] = *value++; 1012af674e45SBarry Smith } 1013af674e45SBarry Smith } 1014af674e45SBarry Smith noinsert2:; 1015af674e45SBarry Smith low = i; 1016af674e45SBarry Smith } 1017af674e45SBarry Smith ailen[row] = nrow; 1018af674e45SBarry Smith } 1019be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1020af674e45SBarry Smith } 10219c8c1041SBarry Smith EXTERN_C_END 1022af674e45SBarry Smith 1023af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 1024af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4 1025af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1026af674e45SBarry Smith #define matsetvalues4_ matsetvalues4 1027af674e45SBarry Smith #endif 1028af674e45SBarry Smith 10299c8c1041SBarry Smith EXTERN_C_BEGIN 1030af674e45SBarry Smith #undef __FUNCT__ 1031af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_" 1032be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v) 1033af674e45SBarry Smith { 1034af674e45SBarry Smith Mat A = *AA; 1035af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1036c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm; 1037c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 1038c1ac3661SBarry Smith PetscInt *aj=a->j,brow,bcol; 103917ec6a02SBarry Smith PetscInt ridx,cidx,lastcol = -1; 1040af674e45SBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 1041af674e45SBarry Smith 1042af674e45SBarry Smith PetscFunctionBegin; 1043af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 1044af674e45SBarry Smith row = im[k]; brow = row/4; 1045af674e45SBarry Smith rp = aj + ai[brow]; 1046af674e45SBarry Smith ap = aa + 16*ai[brow]; 1047af674e45SBarry Smith nrow = ailen[brow]; 1048af674e45SBarry Smith low = 0; 104917ec6a02SBarry Smith high = nrow; 1050af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 1051af674e45SBarry Smith col = in[l]; bcol = col/4; 1052af674e45SBarry Smith ridx = row % 4; cidx = col % 4; 1053af674e45SBarry Smith value = v[l + k*n]; 105417ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 105517ec6a02SBarry Smith lastcol = col; 1056af674e45SBarry Smith while (high-low > 7) { 1057af674e45SBarry Smith t = (low+high)/2; 1058af674e45SBarry Smith if (rp[t] > bcol) high = t; 1059af674e45SBarry Smith else low = t; 1060af674e45SBarry Smith } 1061af674e45SBarry Smith for (i=low; i<high; i++) { 1062af674e45SBarry Smith if (rp[i] > bcol) break; 1063af674e45SBarry Smith if (rp[i] == bcol) { 1064af674e45SBarry Smith bap = ap + 16*i + 4*cidx + ridx; 1065af674e45SBarry Smith *bap += value; 1066af674e45SBarry Smith goto noinsert1; 1067af674e45SBarry Smith } 1068af674e45SBarry Smith } 1069af674e45SBarry Smith N = nrow++ - 1; 107017ec6a02SBarry Smith high++; /* added new column thus must search to one higher than before */ 1071af674e45SBarry Smith /* shift up all the later entries in this row */ 1072af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1073af674e45SBarry Smith rp[ii+1] = rp[ii]; 1074a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1075af674e45SBarry Smith } 1076af674e45SBarry Smith if (N>=i) { 1077a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1078af674e45SBarry Smith } 1079af674e45SBarry Smith rp[i] = bcol; 1080af674e45SBarry Smith ap[16*i + 4*cidx + ridx] = value; 1081af674e45SBarry Smith noinsert1:; 1082af674e45SBarry Smith low = i; 1083af674e45SBarry Smith } 1084af674e45SBarry Smith ailen[brow] = nrow; 1085af674e45SBarry Smith } 1086be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1087af674e45SBarry Smith } 10889c8c1041SBarry Smith EXTERN_C_END 1089af674e45SBarry Smith 1090be5855fcSBarry Smith /* 1091be5855fcSBarry Smith Checks for missing diagonals 1092be5855fcSBarry Smith */ 10934a2ae208SSatish Balay #undef __FUNCT__ 10944a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ" 10952af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d) 1096be5855fcSBarry Smith { 1097be5855fcSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 10986849ba73SBarry Smith PetscErrorCode ierr; 1099c1ac3661SBarry Smith PetscInt *diag,*jj = a->j,i; 1100be5855fcSBarry Smith 1101be5855fcSBarry Smith PetscFunctionBegin; 1102c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 11032af78befSBarry Smith *missing = PETSC_FALSE; 1104883fce79SBarry Smith diag = a->diag; 11050e8e8aceSBarry Smith for (i=0; i<a->mbs; i++) { 1106be5855fcSBarry Smith if (jj[diag[i]] != i) { 11072af78befSBarry Smith *missing = PETSC_TRUE; 11082af78befSBarry Smith if (d) *d = i; 1109be5855fcSBarry Smith } 1110be5855fcSBarry Smith } 1111be5855fcSBarry Smith PetscFunctionReturn(0); 1112be5855fcSBarry Smith } 1113be5855fcSBarry Smith 11144a2ae208SSatish Balay #undef __FUNCT__ 11154a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ" 1116dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1117de6a44a3SBarry Smith { 1118de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 11196849ba73SBarry Smith PetscErrorCode ierr; 112009f38230SBarry Smith PetscInt i,j,m = a->mbs; 1121de6a44a3SBarry Smith 11223a40ed3dSBarry Smith PetscFunctionBegin; 112309f38230SBarry Smith if (!a->diag) { 112409f38230SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr); 112509f38230SBarry Smith } 11267fc0212eSBarry Smith for (i=0; i<m; i++) { 112709f38230SBarry Smith a->diag[i] = a->i[i+1]; 1128de6a44a3SBarry Smith for (j=a->i[i]; j<a->i[i+1]; j++) { 1129de6a44a3SBarry Smith if (a->j[j] == i) { 113009f38230SBarry Smith a->diag[i] = j; 1131de6a44a3SBarry Smith break; 1132de6a44a3SBarry Smith } 1133de6a44a3SBarry Smith } 1134de6a44a3SBarry Smith } 11353a40ed3dSBarry Smith PetscFunctionReturn(0); 1136de6a44a3SBarry Smith } 11372593348eSBarry Smith 11382593348eSBarry Smith 1139690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**); 11403b2fbd54SBarry Smith 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ" 11438f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 11443b2fbd54SBarry Smith { 11453b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1146dfbe8321SBarry Smith PetscErrorCode ierr; 1147d0f46423SBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs,nbs = 1,k,l,cnt; 11488f7157efSSatish Balay PetscInt *tia, *tja; 11493b2fbd54SBarry Smith 11503a40ed3dSBarry Smith PetscFunctionBegin; 11513b2fbd54SBarry Smith *nn = n; 11523a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 11533b2fbd54SBarry Smith if (symmetric) { 11548f7157efSSatish Balay ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr); 11553b2fbd54SBarry Smith } else { 11568f7157efSSatish Balay tia = a->i; tja = a->j; 11573b2fbd54SBarry Smith } 11583b2fbd54SBarry Smith 1159ecc77c7aSBarry Smith if (!blockcompressed && bs > 1) { 1160ecc77c7aSBarry Smith (*nn) *= bs; 1161ecc77c7aSBarry Smith nbs = bs; 11628f7157efSSatish Balay /* malloc & create the natural set of indices */ 1163ecc77c7aSBarry Smith ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr); 11649985e31cSBarry Smith if (n) { 1165ecc77c7aSBarry Smith (*ia)[0] = 0; 1166ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1167ecc77c7aSBarry Smith (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 1168ecc77c7aSBarry Smith } 11699985e31cSBarry Smith } 1170ecc77c7aSBarry Smith 1171ecc77c7aSBarry Smith for (i=1; i<n; i++) { 1172ecc77c7aSBarry Smith (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1173ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1174ecc77c7aSBarry Smith (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 11758f7157efSSatish Balay } 11768f7157efSSatish Balay } 11779985e31cSBarry Smith if (n) { 1178ecc77c7aSBarry Smith (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 11799985e31cSBarry Smith } 1180ecc77c7aSBarry Smith 11819985e31cSBarry Smith if (ja) { 11829985e31cSBarry Smith ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr); 11839985e31cSBarry Smith cnt = 0; 11849985e31cSBarry Smith for (i=0; i<n; i++) { 11859985e31cSBarry Smith for (j=0; j<bs; j++) { 11869985e31cSBarry Smith for (k=tia[i]; k<tia[i+1]; k++) { 11879985e31cSBarry Smith for (l=0; l<bs; l++) { 11889985e31cSBarry Smith (*ja)[cnt++] = bs*tja[k] + l; 11899985e31cSBarry Smith } 11909985e31cSBarry Smith } 11919985e31cSBarry Smith } 11929985e31cSBarry Smith } 11939985e31cSBarry Smith } 11949985e31cSBarry Smith 1195ecc77c7aSBarry Smith n *= bs; 1196ecc77c7aSBarry Smith nz *= bs*bs; 11978f7157efSSatish Balay if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 11988f7157efSSatish Balay ierr = PetscFree(tia);CHKERRQ(ierr); 11998f7157efSSatish Balay ierr = PetscFree(tja);CHKERRQ(ierr); 12008f7157efSSatish Balay } 12018f7157efSSatish Balay } else { 12028f7157efSSatish Balay *ia = tia; 1203ecc77c7aSBarry Smith if (ja) *ja = tja; 12048f7157efSSatish Balay } 12058f7157efSSatish Balay if (oshift == 1) { 1206ecc77c7aSBarry Smith for (i=0; i<n+nbs; i++) (*ia)[i]++; 1207ecc77c7aSBarry Smith if (ja) for (i=0; i<nz; i++) (*ja)[i]++; 12088f7157efSSatish Balay } 12093a40ed3dSBarry Smith PetscFunctionReturn(0); 12103b2fbd54SBarry Smith } 12113b2fbd54SBarry Smith 12124a2ae208SSatish Balay #undef __FUNCT__ 12134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ" 12148f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 12153b2fbd54SBarry Smith { 12163b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 12176849ba73SBarry Smith PetscErrorCode ierr; 12188f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 12193b2fbd54SBarry Smith 12203a40ed3dSBarry Smith PetscFunctionBegin; 12213a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 1222d0f46423SBarry Smith if (!blockcompressed && A->rmap->bs > 1) { 1223ecc77c7aSBarry Smith ierr = PetscFree(*ia);CHKERRQ(ierr); 12249985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12258f7157efSSatish Balay } else if (symmetric) { 1226606d414cSSatish Balay ierr = PetscFree(*ia);CHKERRQ(ierr); 12279985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12288f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 12293b2fbd54SBarry Smith for (i=0; i<n+1; i++) a->i[i]--; 12309985e31cSBarry Smith if (ja) {for (i=0; i<nz; i++) a->j[i]--;} 12313b2fbd54SBarry Smith } 12323a40ed3dSBarry Smith PetscFunctionReturn(0); 12333b2fbd54SBarry Smith } 12343b2fbd54SBarry Smith 12354a2ae208SSatish Balay #undef __FUNCT__ 12364a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ" 1237dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 12382d61bbb3SSatish Balay { 12392d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1240dfbe8321SBarry Smith PetscErrorCode ierr; 12412d61bbb3SSatish Balay 1242433994e6SBarry Smith PetscFunctionBegin; 1243aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1244d0f46423SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz); 12452d61bbb3SSatish Balay #endif 1246e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1247c38d4ed2SBarry Smith if (a->row) { 1248c38d4ed2SBarry Smith ierr = ISDestroy(a->row);CHKERRQ(ierr); 1249c38d4ed2SBarry Smith } 1250c38d4ed2SBarry Smith if (a->col) { 1251c38d4ed2SBarry Smith ierr = ISDestroy(a->col);CHKERRQ(ierr); 1252c38d4ed2SBarry Smith } 125305b42c5fSBarry Smith ierr = PetscFree(a->diag);CHKERRQ(ierr); 125405b42c5fSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 125505b42c5fSBarry Smith ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr); 125605b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 125705b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 1258e51c0b9cSSatish Balay if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);} 125905b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 126005b42c5fSBarry Smith ierr = PetscFree(a->xtoy);CHKERRQ(ierr); 126173e7a558SHong Zhang if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);} 1262c4319e64SHong Zhang 126370e08fbdSBarry Smith if (a->sbaijMat) {ierr = MatDestroy(a->sbaijMat);CHKERRQ(ierr);} 1264606d414cSSatish Balay ierr = PetscFree(a);CHKERRQ(ierr); 1265901853e0SKris Buschelman 1266dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 126743516a2dSKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr); 1268901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1269901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1270901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr); 1271901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr); 1272901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr); 1273901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1274725b52f3SLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 12752d61bbb3SSatish Balay PetscFunctionReturn(0); 12762d61bbb3SSatish Balay } 12772d61bbb3SSatish Balay 12784a2ae208SSatish Balay #undef __FUNCT__ 12794a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ" 12804e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg) 12812d61bbb3SSatish Balay { 12822d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 128363ba0a88SBarry Smith PetscErrorCode ierr; 12842d61bbb3SSatish Balay 12852d61bbb3SSatish Balay PetscFunctionBegin; 1286aa275fccSKris Buschelman switch (op) { 1287aa275fccSKris Buschelman case MAT_ROW_ORIENTED: 12884e0d8c25SBarry Smith a->roworiented = flg; 1289aa275fccSKris Buschelman break; 1290aa275fccSKris Buschelman case MAT_KEEP_ZEROED_ROWS: 12914e0d8c25SBarry Smith a->keepzeroedrows = flg; 1292aa275fccSKris Buschelman break; 1293512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1294512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1295aa275fccSKris Buschelman break; 1296aa275fccSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12974e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1298aa275fccSKris Buschelman break; 1299aa275fccSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 13004e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1301aa275fccSKris Buschelman break; 13024e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1303aa275fccSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1304aa275fccSKris Buschelman case MAT_USE_HASH_TABLE: 1305290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1306aa275fccSKris Buschelman break; 130777e54ba9SKris Buschelman case MAT_SYMMETRIC: 130877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13099a4540c5SBarry Smith case MAT_HERMITIAN: 13109a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1311290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 131277e54ba9SKris Buschelman break; 1313aa275fccSKris Buschelman default: 1314ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 13152d61bbb3SSatish Balay } 13162d61bbb3SSatish Balay PetscFunctionReturn(0); 13172d61bbb3SSatish Balay } 13182d61bbb3SSatish Balay 13194a2ae208SSatish Balay #undef __FUNCT__ 13204a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ" 1321c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13222d61bbb3SSatish Balay { 13232d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 13246849ba73SBarry Smith PetscErrorCode ierr; 1325c1ac3661SBarry Smith PetscInt itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2; 13263f1db9ecSBarry Smith MatScalar *aa,*aa_i; 132787828ca2SBarry Smith PetscScalar *v_i; 13282d61bbb3SSatish Balay 13292d61bbb3SSatish Balay PetscFunctionBegin; 1330d0f46423SBarry Smith bs = A->rmap->bs; 13312d61bbb3SSatish Balay ai = a->i; 13322d61bbb3SSatish Balay aj = a->j; 13332d61bbb3SSatish Balay aa = a->a; 13342d61bbb3SSatish Balay bs2 = a->bs2; 13352d61bbb3SSatish Balay 1336d0f46423SBarry Smith if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row); 13372d61bbb3SSatish Balay 13382d61bbb3SSatish Balay bn = row/bs; /* Block number */ 13392d61bbb3SSatish Balay bp = row % bs; /* Block Position */ 13402d61bbb3SSatish Balay M = ai[bn+1] - ai[bn]; 13412d61bbb3SSatish Balay *nz = bs*M; 13422d61bbb3SSatish Balay 13432d61bbb3SSatish Balay if (v) { 13442d61bbb3SSatish Balay *v = 0; 13452d61bbb3SSatish Balay if (*nz) { 134687828ca2SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr); 13472d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13482d61bbb3SSatish Balay v_i = *v + i*bs; 13492d61bbb3SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 13502d61bbb3SSatish Balay for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];} 13512d61bbb3SSatish Balay } 13522d61bbb3SSatish Balay } 13532d61bbb3SSatish Balay } 13542d61bbb3SSatish Balay 13552d61bbb3SSatish Balay if (idx) { 13562d61bbb3SSatish Balay *idx = 0; 13572d61bbb3SSatish Balay if (*nz) { 1358c1ac3661SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr); 13592d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13602d61bbb3SSatish Balay idx_i = *idx + i*bs; 13612d61bbb3SSatish Balay itmp = bs*aj[ai[bn] + i]; 13622d61bbb3SSatish Balay for (j=0; j<bs; j++) {idx_i[j] = itmp++;} 13632d61bbb3SSatish Balay } 13642d61bbb3SSatish Balay } 13652d61bbb3SSatish Balay } 13662d61bbb3SSatish Balay PetscFunctionReturn(0); 13672d61bbb3SSatish Balay } 13682d61bbb3SSatish Balay 13694a2ae208SSatish Balay #undef __FUNCT__ 13704a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ" 1371c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13722d61bbb3SSatish Balay { 1373dfbe8321SBarry Smith PetscErrorCode ierr; 1374606d414cSSatish Balay 13752d61bbb3SSatish Balay PetscFunctionBegin; 137605b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 137705b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 13782d61bbb3SSatish Balay PetscFunctionReturn(0); 13792d61bbb3SSatish Balay } 13802d61bbb3SSatish Balay 13814a2ae208SSatish Balay #undef __FUNCT__ 13824a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ" 1383fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B) 13842d61bbb3SSatish Balay { 13852d61bbb3SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; 13862d61bbb3SSatish Balay Mat C; 13876849ba73SBarry Smith PetscErrorCode ierr; 1388d0f46423SBarry Smith PetscInt i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col; 1389c1ac3661SBarry Smith PetscInt *rows,*cols,bs2=a->bs2; 1390dd6ea824SBarry Smith MatScalar *array; 13912d61bbb3SSatish Balay 13922d61bbb3SSatish Balay PetscFunctionBegin; 1393e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1394fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *B) { 1395c1ac3661SBarry Smith ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr); 1396c1ac3661SBarry Smith ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr); 13972d61bbb3SSatish Balay 13982d61bbb3SSatish Balay for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1; 13997adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr); 1400d0f46423SBarry Smith ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr); 14017adad957SLisandro Dalcin ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1402ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr); 1403606d414cSSatish Balay ierr = PetscFree(col);CHKERRQ(ierr); 1404fc4dec0aSBarry Smith } else { 1405fc4dec0aSBarry Smith C = *B; 1406fc4dec0aSBarry Smith } 1407fc4dec0aSBarry Smith 1408fc4dec0aSBarry Smith array = a->a; 1409c1ac3661SBarry Smith ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr); 14102d61bbb3SSatish Balay cols = rows + bs; 14112d61bbb3SSatish Balay for (i=0; i<mbs; i++) { 14122d61bbb3SSatish Balay cols[0] = i*bs; 14132d61bbb3SSatish Balay for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1; 14142d61bbb3SSatish Balay len = ai[i+1] - ai[i]; 14152d61bbb3SSatish Balay for (j=0; j<len; j++) { 14162d61bbb3SSatish Balay rows[0] = (*aj++)*bs; 14172d61bbb3SSatish Balay for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1; 14182d61bbb3SSatish Balay ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr); 14192d61bbb3SSatish Balay array += bs2; 14202d61bbb3SSatish Balay } 14212d61bbb3SSatish Balay } 1422606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 14232d61bbb3SSatish Balay 14242d61bbb3SSatish Balay ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14252d61bbb3SSatish Balay ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14262d61bbb3SSatish Balay 1427815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *B != A) { 14282d61bbb3SSatish Balay *B = C; 14292d61bbb3SSatish Balay } else { 1430273d9f13SBarry Smith ierr = MatHeaderCopy(A,C);CHKERRQ(ierr); 14312d61bbb3SSatish Balay } 14322d61bbb3SSatish Balay PetscFunctionReturn(0); 14332d61bbb3SSatish Balay } 14342d61bbb3SSatish Balay 14354a2ae208SSatish Balay #undef __FUNCT__ 14364a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary" 14376849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer) 14382593348eSBarry Smith { 1439b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 14406849ba73SBarry Smith PetscErrorCode ierr; 1441d0f46423SBarry Smith PetscInt i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2; 1442b24ad042SBarry Smith int fd; 144387828ca2SBarry Smith PetscScalar *aa; 1444ce6f0cecSBarry Smith FILE *file; 14452593348eSBarry Smith 14463a40ed3dSBarry Smith PetscFunctionBegin; 1447b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1448d0f46423SBarry Smith ierr = PetscMalloc((4+A->rmap->N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 1449552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 14503b2fbd54SBarry Smith 1451d0f46423SBarry Smith col_lens[1] = A->rmap->N; 1452d0f46423SBarry Smith col_lens[2] = A->cmap->n; 14537e67e3f9SSatish Balay col_lens[3] = a->nz*bs2; 14542593348eSBarry Smith 14552593348eSBarry Smith /* store lengths of each row and write (including header) to file */ 1456b6490206SBarry Smith count = 0; 1457b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1458b6490206SBarry Smith for (j=0; j<bs; j++) { 1459b6490206SBarry Smith col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 1460b6490206SBarry Smith } 14612593348eSBarry Smith } 1462d0f46423SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1463606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 14642593348eSBarry Smith 14652593348eSBarry Smith /* store column indices (zero start index) */ 1466c1ac3661SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr); 1467b6490206SBarry Smith count = 0; 1468b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1469b6490206SBarry Smith for (j=0; j<bs; j++) { 1470b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1471b6490206SBarry Smith for (l=0; l<bs; l++) { 1472b6490206SBarry Smith jj[count++] = bs*a->j[k] + l; 14732593348eSBarry Smith } 14742593348eSBarry Smith } 1475b6490206SBarry Smith } 1476b6490206SBarry Smith } 14776f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 1478606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 14792593348eSBarry Smith 14802593348eSBarry Smith /* store nonzero values */ 148187828ca2SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 1482b6490206SBarry Smith count = 0; 1483b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1484b6490206SBarry Smith for (j=0; j<bs; j++) { 1485b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1486b6490206SBarry Smith for (l=0; l<bs; l++) { 14877e67e3f9SSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 1488b6490206SBarry Smith } 1489b6490206SBarry Smith } 1490b6490206SBarry Smith } 1491b6490206SBarry Smith } 14926f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1493606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 1494ce6f0cecSBarry Smith 1495b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1496ce6f0cecSBarry Smith if (file) { 1497d0f46423SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 1498ce6f0cecSBarry Smith } 14993a40ed3dSBarry Smith PetscFunctionReturn(0); 15002593348eSBarry Smith } 15012593348eSBarry Smith 15024a2ae208SSatish Balay #undef __FUNCT__ 15034a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII" 15046849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer) 15052593348eSBarry Smith { 1506b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1507dfbe8321SBarry Smith PetscErrorCode ierr; 1508d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 1509f3ef73ceSBarry Smith PetscViewerFormat format; 15102593348eSBarry Smith 15113a40ed3dSBarry Smith PetscFunctionBegin; 1512b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1513456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 151477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 1515fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1516bcd9e38bSBarry Smith Mat aij; 1517ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 1518bcd9e38bSBarry Smith ierr = MatView(aij,viewer);CHKERRQ(ierr); 1519bcd9e38bSBarry Smith ierr = MatDestroy(aij);CHKERRQ(ierr); 152004929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 152104929863SHong Zhang PetscFunctionReturn(0); 1522fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1523b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 152444cd7ae7SLois Curfman McInnes for (i=0; i<a->mbs; i++) { 152544cd7ae7SLois Curfman McInnes for (j=0; j<bs; j++) { 152677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 152744cd7ae7SLois Curfman McInnes for (k=a->i[i]; k<a->i[i+1]; k++) { 152844cd7ae7SLois Curfman McInnes for (l=0; l<bs; l++) { 1529aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15300e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1531a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l, 15320e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15330e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1534a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l, 15350e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15360e6d2581SBarry Smith } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1537a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15380ef38995SBarry Smith } 153944cd7ae7SLois Curfman McInnes #else 15400ef38995SBarry Smith if (a->a[bs2*k + l*bs + j] != 0.0) { 1541a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 15420ef38995SBarry Smith } 154344cd7ae7SLois Curfman McInnes #endif 154444cd7ae7SLois Curfman McInnes } 154544cd7ae7SLois Curfman McInnes } 1546b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 154744cd7ae7SLois Curfman McInnes } 154844cd7ae7SLois Curfman McInnes } 1549b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 15500ef38995SBarry Smith } else { 1551b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 1552b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1553b6490206SBarry Smith for (j=0; j<bs; j++) { 155477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 1555b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1556b6490206SBarry Smith for (l=0; l<bs; l++) { 1557aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15580e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 1559a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l, 15600e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15610e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 1562a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l, 15630e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15640ef38995SBarry Smith } else { 1565a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 156688685aaeSLois Curfman McInnes } 156788685aaeSLois Curfman McInnes #else 1568a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 156988685aaeSLois Curfman McInnes #endif 15702593348eSBarry Smith } 15712593348eSBarry Smith } 1572b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 15732593348eSBarry Smith } 15742593348eSBarry Smith } 1575b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 1576b6490206SBarry Smith } 1577b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 15783a40ed3dSBarry Smith PetscFunctionReturn(0); 15792593348eSBarry Smith } 15802593348eSBarry Smith 15814a2ae208SSatish Balay #undef __FUNCT__ 15824a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom" 15836849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 15843270192aSSatish Balay { 158577ed5343SBarry Smith Mat A = (Mat) Aa; 15863270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 15876849ba73SBarry Smith PetscErrorCode ierr; 1588d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 15890e6d2581SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 15903f1db9ecSBarry Smith MatScalar *aa; 1591b0a32e0cSBarry Smith PetscViewer viewer; 15923270192aSSatish Balay 15933a40ed3dSBarry Smith PetscFunctionBegin; 15943270192aSSatish Balay 1595b65db4caSBarry Smith /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/ 159677ed5343SBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 159777ed5343SBarry Smith 1598b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 159977ed5343SBarry Smith 16003270192aSSatish Balay /* loop over matrix elements drawing boxes */ 1601b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 16023270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16033270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1604d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16053270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16063270192aSSatish Balay aa = a->a + j*bs2; 16073270192aSSatish Balay for (k=0; k<bs; k++) { 16083270192aSSatish Balay for (l=0; l<bs; l++) { 16090e6d2581SBarry Smith if (PetscRealPart(*aa++) >= 0.) continue; 1610b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16113270192aSSatish Balay } 16123270192aSSatish Balay } 16133270192aSSatish Balay } 16143270192aSSatish Balay } 1615b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 16163270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16173270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1618d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16193270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16203270192aSSatish Balay aa = a->a + j*bs2; 16213270192aSSatish Balay for (k=0; k<bs; k++) { 16223270192aSSatish Balay for (l=0; l<bs; l++) { 16230e6d2581SBarry Smith if (PetscRealPart(*aa++) != 0.) continue; 1624b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16253270192aSSatish Balay } 16263270192aSSatish Balay } 16273270192aSSatish Balay } 16283270192aSSatish Balay } 16293270192aSSatish Balay 1630b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 16313270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16323270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1633d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16343270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16353270192aSSatish Balay aa = a->a + j*bs2; 16363270192aSSatish Balay for (k=0; k<bs; k++) { 16373270192aSSatish Balay for (l=0; l<bs; l++) { 16380e6d2581SBarry Smith if (PetscRealPart(*aa++) <= 0.) continue; 1639b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16403270192aSSatish Balay } 16413270192aSSatish Balay } 16423270192aSSatish Balay } 16433270192aSSatish Balay } 164477ed5343SBarry Smith PetscFunctionReturn(0); 164577ed5343SBarry Smith } 16463270192aSSatish Balay 16474a2ae208SSatish Balay #undef __FUNCT__ 16484a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw" 16496849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer) 165077ed5343SBarry Smith { 1651dfbe8321SBarry Smith PetscErrorCode ierr; 16520e6d2581SBarry Smith PetscReal xl,yl,xr,yr,w,h; 1653b0a32e0cSBarry Smith PetscDraw draw; 165477ed5343SBarry Smith PetscTruth isnull; 16553270192aSSatish Balay 165677ed5343SBarry Smith PetscFunctionBegin; 165777ed5343SBarry Smith 1658b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1659b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 166077ed5343SBarry Smith 166177ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1662d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 166377ed5343SBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1664b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1665b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 166677ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 16673a40ed3dSBarry Smith PetscFunctionReturn(0); 16683270192aSSatish Balay } 16693270192aSSatish Balay 16704a2ae208SSatish Balay #undef __FUNCT__ 16714a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ" 1672dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer) 16732593348eSBarry Smith { 1674dfbe8321SBarry Smith PetscErrorCode ierr; 167532077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw; 16762593348eSBarry Smith 16773a40ed3dSBarry Smith PetscFunctionBegin; 167832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1679fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1680fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 168132077d6dSBarry Smith if (iascii){ 16823a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 16830f5bd95cSBarry Smith } else if (isbinary) { 16843a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr); 16850f5bd95cSBarry Smith } else if (isdraw) { 16863a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr); 16875cd90555SBarry Smith } else { 1688a5e6ed63SBarry Smith Mat B; 1689ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 1690a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 1691a5e6ed63SBarry Smith ierr = MatDestroy(B);CHKERRQ(ierr); 16922593348eSBarry Smith } 16933a40ed3dSBarry Smith PetscFunctionReturn(0); 16942593348eSBarry Smith } 1695b6490206SBarry Smith 1696cd0e1443SSatish Balay 16974a2ae208SSatish Balay #undef __FUNCT__ 16984a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ" 1699c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1700cd0e1443SSatish Balay { 1701cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1702c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 1703c1ac3661SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 1704d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 170597e567efSBarry Smith MatScalar *ap,*aa = a->a; 1706cd0e1443SSatish Balay 17073a40ed3dSBarry Smith PetscFunctionBegin; 17082d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 1709cd0e1443SSatish Balay row = im[k]; brow = row/bs; 171097e567efSBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 1711d0f46423SBarry Smith if (row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row); 17122d61bbb3SSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 17132c3acbe9SBarry Smith nrow = ailen[brow]; 17142d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 171597e567efSBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 1716d0f46423SBarry Smith if (in[l] >= A->cmap->n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]); 17172d61bbb3SSatish Balay col = in[l] ; 17182d61bbb3SSatish Balay bcol = col/bs; 17192d61bbb3SSatish Balay cidx = col%bs; 17202d61bbb3SSatish Balay ridx = row%bs; 17212d61bbb3SSatish Balay high = nrow; 17222d61bbb3SSatish Balay low = 0; /* assume unsorted */ 17232d61bbb3SSatish Balay while (high-low > 5) { 1724cd0e1443SSatish Balay t = (low+high)/2; 1725cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 1726cd0e1443SSatish Balay else low = t; 1727cd0e1443SSatish Balay } 1728cd0e1443SSatish Balay for (i=low; i<high; i++) { 1729cd0e1443SSatish Balay if (rp[i] > bcol) break; 1730cd0e1443SSatish Balay if (rp[i] == bcol) { 17312d61bbb3SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 17322d61bbb3SSatish Balay goto finished; 1733cd0e1443SSatish Balay } 1734cd0e1443SSatish Balay } 173597e567efSBarry Smith *v++ = 0.0; 17362d61bbb3SSatish Balay finished:; 1737cd0e1443SSatish Balay } 1738cd0e1443SSatish Balay } 17393a40ed3dSBarry Smith PetscFunctionReturn(0); 1740cd0e1443SSatish Balay } 1741cd0e1443SSatish Balay 174297e5c40aSBarry Smith #define CHUNKSIZE 10 17434a2ae208SSatish Balay #undef __FUNCT__ 17444a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ" 1745dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 174692c4ed94SBarry Smith { 174792c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1748e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 1749c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 17506849ba73SBarry Smith PetscErrorCode ierr; 1751d0f46423SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 1752273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 1753dd6ea824SBarry Smith const PetscScalar *value = v; 1754f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 175592c4ed94SBarry Smith 17563a40ed3dSBarry Smith PetscFunctionBegin; 17570e324ae4SSatish Balay if (roworiented) { 17580e324ae4SSatish Balay stepval = (n-1)*bs; 17590e324ae4SSatish Balay } else { 17600e324ae4SSatish Balay stepval = (m-1)*bs; 17610e324ae4SSatish Balay } 176292c4ed94SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 176392c4ed94SBarry Smith row = im[k]; 17645ef9f2a5SBarry Smith if (row < 0) continue; 17652515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 176677431f27SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 176792c4ed94SBarry Smith #endif 176892c4ed94SBarry Smith rp = aj + ai[row]; 176992c4ed94SBarry Smith ap = aa + bs2*ai[row]; 177092c4ed94SBarry Smith rmax = imax[row]; 177192c4ed94SBarry Smith nrow = ailen[row]; 177292c4ed94SBarry Smith low = 0; 1773c71e6ed7SBarry Smith high = nrow; 177492c4ed94SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 17755ef9f2a5SBarry Smith if (in[l] < 0) continue; 17762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 177777431f27SBarry Smith if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1); 177892c4ed94SBarry Smith #endif 177992c4ed94SBarry Smith col = in[l]; 178092c4ed94SBarry Smith if (roworiented) { 17810e324ae4SSatish Balay value = v + k*(stepval+bs)*bs + l*bs; 17820e324ae4SSatish Balay } else { 17830e324ae4SSatish Balay value = v + l*(stepval+bs)*bs + k*bs; 178492c4ed94SBarry Smith } 17857cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 1786e2ee6c50SBarry Smith lastcol = col; 178792c4ed94SBarry Smith while (high-low > 7) { 178892c4ed94SBarry Smith t = (low+high)/2; 178992c4ed94SBarry Smith if (rp[t] > col) high = t; 179092c4ed94SBarry Smith else low = t; 179192c4ed94SBarry Smith } 179292c4ed94SBarry Smith for (i=low; i<high; i++) { 179392c4ed94SBarry Smith if (rp[i] > col) break; 179492c4ed94SBarry Smith if (rp[i] == col) { 17958a84c255SSatish Balay bap = ap + bs2*i; 17960e324ae4SSatish Balay if (roworiented) { 17978a84c255SSatish Balay if (is == ADD_VALUES) { 1798dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1799dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18008a84c255SSatish Balay bap[jj] += *value++; 1801dd9472c6SBarry Smith } 1802dd9472c6SBarry Smith } 18030e324ae4SSatish Balay } else { 1804dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1805dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18060e324ae4SSatish Balay bap[jj] = *value++; 18078a84c255SSatish Balay } 1808dd9472c6SBarry Smith } 1809dd9472c6SBarry Smith } 18100e324ae4SSatish Balay } else { 18110e324ae4SSatish Balay if (is == ADD_VALUES) { 1812dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1813dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18140e324ae4SSatish Balay *bap++ += *value++; 1815dd9472c6SBarry Smith } 1816dd9472c6SBarry Smith } 18170e324ae4SSatish Balay } else { 1818dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1819dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18200e324ae4SSatish Balay *bap++ = *value++; 18210e324ae4SSatish Balay } 18228a84c255SSatish Balay } 1823dd9472c6SBarry Smith } 1824dd9472c6SBarry Smith } 1825f1241b54SBarry Smith goto noinsert2; 182692c4ed94SBarry Smith } 182792c4ed94SBarry Smith } 182889280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 1829085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1830421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 1831c03d1d03SSatish Balay N = nrow++ - 1; high++; 183292c4ed94SBarry Smith /* shift up all the later entries in this row */ 183392c4ed94SBarry Smith for (ii=N; ii>=i; ii--) { 183492c4ed94SBarry Smith rp[ii+1] = rp[ii]; 1835549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 183692c4ed94SBarry Smith } 1837549d3d68SSatish Balay if (N >= i) { 1838549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1839549d3d68SSatish Balay } 184092c4ed94SBarry Smith rp[i] = col; 18418a84c255SSatish Balay bap = ap + bs2*i; 18420e324ae4SSatish Balay if (roworiented) { 1843dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1844dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18450e324ae4SSatish Balay bap[jj] = *value++; 1846dd9472c6SBarry Smith } 1847dd9472c6SBarry Smith } 18480e324ae4SSatish Balay } else { 1849dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1850dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18510e324ae4SSatish Balay *bap++ = *value++; 18520e324ae4SSatish Balay } 1853dd9472c6SBarry Smith } 1854dd9472c6SBarry Smith } 1855f1241b54SBarry Smith noinsert2:; 185692c4ed94SBarry Smith low = i; 185792c4ed94SBarry Smith } 185892c4ed94SBarry Smith ailen[row] = nrow; 185992c4ed94SBarry Smith } 18603a40ed3dSBarry Smith PetscFunctionReturn(0); 186192c4ed94SBarry Smith } 186226e093fcSHong Zhang 18634a2ae208SSatish Balay #undef __FUNCT__ 18644a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ" 1865dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 1866584200bdSSatish Balay { 1867584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1868c1ac3661SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 1869d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 18706849ba73SBarry Smith PetscErrorCode ierr; 1871c1ac3661SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 18723f1db9ecSBarry Smith MatScalar *aa = a->a,*ap; 18733447b6efSHong Zhang PetscReal ratio=0.6; 1874584200bdSSatish Balay 18753a40ed3dSBarry Smith PetscFunctionBegin; 18763a40ed3dSBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1877584200bdSSatish Balay 187843ee02c3SBarry Smith if (m) rmax = ailen[0]; 1879584200bdSSatish Balay for (i=1; i<mbs; i++) { 1880584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 1881584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 1882d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 1883584200bdSSatish Balay if (fshift) { 1884a7c10996SSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 1885584200bdSSatish Balay N = ailen[i]; 1886584200bdSSatish Balay for (j=0; j<N; j++) { 1887584200bdSSatish Balay ip[j-fshift] = ip[j]; 1888549d3d68SSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1889584200bdSSatish Balay } 1890584200bdSSatish Balay } 1891584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 1892584200bdSSatish Balay } 1893584200bdSSatish Balay if (mbs) { 1894584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 1895584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 1896584200bdSSatish Balay } 1897584200bdSSatish Balay /* reset ilen and imax for each row */ 1898584200bdSSatish Balay for (i=0; i<mbs; i++) { 1899584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 1900584200bdSSatish Balay } 1901a7c10996SSatish Balay a->nz = ai[mbs]; 1902584200bdSSatish Balay 1903584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 1904b01c7715SBarry Smith a->idiagvalid = PETSC_FALSE; 1905584200bdSSatish Balay if (fshift && a->diag) { 1906606d414cSSatish Balay ierr = PetscFree(a->diag);CHKERRQ(ierr); 190752e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 1908584200bdSSatish Balay a->diag = 0; 1909584200bdSSatish Balay } 1910d0f46423SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 1911ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 1912ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 1913e2f3b5e9SSatish Balay a->reallocs = 0; 19140e6d2581SBarry Smith A->info.nz_unneeded = (PetscReal)fshift*bs2; 1915cf4441caSHong Zhang 1916cb5d8e9eSHong Zhang /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */ 19172f53aa61SHong Zhang if (a->compressedrow.use){ 1918317fbc4cSHong Zhang ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr); 191973e7a558SHong Zhang } 192088e51ccdSHong Zhang 192188e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 19223a40ed3dSBarry Smith PetscFunctionReturn(0); 1923584200bdSSatish Balay } 1924584200bdSSatish Balay 1925bea157c4SSatish Balay /* 1926bea157c4SSatish Balay This function returns an array of flags which indicate the locations of contiguous 1927bea157c4SSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 1928bea157c4SSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 1929bea157c4SSatish Balay Assume: sizes should be long enough to hold all the values. 1930bea157c4SSatish Balay */ 19314a2ae208SSatish Balay #undef __FUNCT__ 19324a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks" 1933c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 1934d9b7c43dSSatish Balay { 1935c1ac3661SBarry Smith PetscInt i,j,k,row; 1936bea157c4SSatish Balay PetscTruth flg; 19373a40ed3dSBarry Smith 1938433994e6SBarry Smith PetscFunctionBegin; 1939bea157c4SSatish Balay for (i=0,j=0; i<n; j++) { 1940bea157c4SSatish Balay row = idx[i]; 1941bea157c4SSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 1942bea157c4SSatish Balay sizes[j] = 1; 1943bea157c4SSatish Balay i++; 1944e4fda26cSSatish Balay } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */ 1945bea157c4SSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 1946bea157c4SSatish Balay i++; 1947bea157c4SSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 1948bea157c4SSatish Balay flg = PETSC_TRUE; 1949bea157c4SSatish Balay for (k=1; k<bs; k++) { 1950bea157c4SSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 1951bea157c4SSatish Balay flg = PETSC_FALSE; 1952bea157c4SSatish Balay break; 1953d9b7c43dSSatish Balay } 1954bea157c4SSatish Balay } 1955abc0a331SBarry Smith if (flg) { /* No break in the bs */ 1956bea157c4SSatish Balay sizes[j] = bs; 1957bea157c4SSatish Balay i+= bs; 1958bea157c4SSatish Balay } else { 1959bea157c4SSatish Balay sizes[j] = 1; 1960bea157c4SSatish Balay i++; 1961bea157c4SSatish Balay } 1962bea157c4SSatish Balay } 1963bea157c4SSatish Balay } 1964bea157c4SSatish Balay *bs_max = j; 19653a40ed3dSBarry Smith PetscFunctionReturn(0); 1966d9b7c43dSSatish Balay } 1967d9b7c43dSSatish Balay 19684a2ae208SSatish Balay #undef __FUNCT__ 19694a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ" 1970f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag) 1971d9b7c43dSSatish Balay { 1972d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 1973dfbe8321SBarry Smith PetscErrorCode ierr; 1974f4df32b1SMatthew Knepley PetscInt i,j,k,count,*rows; 1975d0f46423SBarry Smith PetscInt bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max; 197687828ca2SBarry Smith PetscScalar zero = 0.0; 19773f1db9ecSBarry Smith MatScalar *aa; 1978d9b7c43dSSatish Balay 19793a40ed3dSBarry Smith PetscFunctionBegin; 1980d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 1981bea157c4SSatish Balay /* allocate memory for rows,sizes */ 1982c1ac3661SBarry Smith ierr = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr); 1983bea157c4SSatish Balay sizes = rows + is_n; 1984bea157c4SSatish Balay 1985563b5814SBarry Smith /* copy IS values to rows, and sort them */ 1986bea157c4SSatish Balay for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; } 1987bea157c4SSatish Balay ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr); 1988dffd3267SBarry Smith if (baij->keepzeroedrows) { 1989dffd3267SBarry Smith for (i=0; i<is_n; i++) { sizes[i] = 1; } 1990dffd3267SBarry Smith bs_max = is_n; 199188e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 1992dffd3267SBarry Smith } else { 1993bea157c4SSatish Balay ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr); 199488e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 1995dffd3267SBarry Smith } 1996bea157c4SSatish Balay 1997bea157c4SSatish Balay for (i=0,j=0; i<bs_max; j+=sizes[i],i++) { 1998bea157c4SSatish Balay row = rows[j]; 1999d0f46423SBarry Smith if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row); 2000bea157c4SSatish Balay count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 2001b31fbe3bSSatish Balay aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 2002dffd3267SBarry Smith if (sizes[i] == bs && !baij->keepzeroedrows) { 2003f4df32b1SMatthew Knepley if (diag != 0.0) { 2004bea157c4SSatish Balay if (baij->ilen[row/bs] > 0) { 2005bea157c4SSatish Balay baij->ilen[row/bs] = 1; 2006bea157c4SSatish Balay baij->j[baij->i[row/bs]] = row/bs; 2007bea157c4SSatish Balay ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr); 2008a07cd24cSSatish Balay } 2009563b5814SBarry Smith /* Now insert all the diagonal values for this bs */ 2010bea157c4SSatish Balay for (k=0; k<bs; k++) { 2011f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr); 2012bea157c4SSatish Balay } 2013f4df32b1SMatthew Knepley } else { /* (diag == 0.0) */ 2014bea157c4SSatish Balay baij->ilen[row/bs] = 0; 2015f4df32b1SMatthew Knepley } /* end (diag == 0.0) */ 2016bea157c4SSatish Balay } else { /* (sizes[i] != bs) */ 2017aa482453SBarry Smith #if defined (PETSC_USE_DEBUG) 2018634064b4SBarry Smith if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1"); 2019bea157c4SSatish Balay #endif 2020bea157c4SSatish Balay for (k=0; k<count; k++) { 2021d9b7c43dSSatish Balay aa[0] = zero; 2022d9b7c43dSSatish Balay aa += bs; 2023d9b7c43dSSatish Balay } 2024f4df32b1SMatthew Knepley if (diag != 0.0) { 2025f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr); 2026d9b7c43dSSatish Balay } 2027d9b7c43dSSatish Balay } 2028bea157c4SSatish Balay } 2029bea157c4SSatish Balay 2030606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 20319a8dea36SBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20323a40ed3dSBarry Smith PetscFunctionReturn(0); 2033d9b7c43dSSatish Balay } 20341c351548SSatish Balay 20354a2ae208SSatish Balay #undef __FUNCT__ 20364a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ" 2037c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 20382d61bbb3SSatish Balay { 20392d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2040e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 2041c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2042d0f46423SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 20436849ba73SBarry Smith PetscErrorCode ierr; 2044c1ac3661SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 2045273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 20463f1db9ecSBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 20472d61bbb3SSatish Balay 20482d61bbb3SSatish Balay PetscFunctionBegin; 20492d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 2050085a36d4SBarry Smith row = im[k]; 2051085a36d4SBarry Smith brow = row/bs; 20525ef9f2a5SBarry Smith if (row < 0) continue; 20532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2054d0f46423SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 20552d61bbb3SSatish Balay #endif 20562d61bbb3SSatish Balay rp = aj + ai[brow]; 20572d61bbb3SSatish Balay ap = aa + bs2*ai[brow]; 20582d61bbb3SSatish Balay rmax = imax[brow]; 20592d61bbb3SSatish Balay nrow = ailen[brow]; 20602d61bbb3SSatish Balay low = 0; 2061c71e6ed7SBarry Smith high = nrow; 20622d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 20635ef9f2a5SBarry Smith if (in[l] < 0) continue; 20642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2065d0f46423SBarry Smith if (in[l] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 20662d61bbb3SSatish Balay #endif 20672d61bbb3SSatish Balay col = in[l]; bcol = col/bs; 20682d61bbb3SSatish Balay ridx = row % bs; cidx = col % bs; 20692d61bbb3SSatish Balay if (roworiented) { 20705ef9f2a5SBarry Smith value = v[l + k*n]; 20712d61bbb3SSatish Balay } else { 20722d61bbb3SSatish Balay value = v[k + l*m]; 20732d61bbb3SSatish Balay } 20747cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 2075e2ee6c50SBarry Smith lastcol = col; 20762d61bbb3SSatish Balay while (high-low > 7) { 20772d61bbb3SSatish Balay t = (low+high)/2; 20782d61bbb3SSatish Balay if (rp[t] > bcol) high = t; 20792d61bbb3SSatish Balay else low = t; 20802d61bbb3SSatish Balay } 20812d61bbb3SSatish Balay for (i=low; i<high; i++) { 20822d61bbb3SSatish Balay if (rp[i] > bcol) break; 20832d61bbb3SSatish Balay if (rp[i] == bcol) { 20842d61bbb3SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 20852d61bbb3SSatish Balay if (is == ADD_VALUES) *bap += value; 20862d61bbb3SSatish Balay else *bap = value; 20872d61bbb3SSatish Balay goto noinsert1; 20882d61bbb3SSatish Balay } 20892d61bbb3SSatish Balay } 20902d61bbb3SSatish Balay if (nonew == 1) goto noinsert1; 2091085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 2092421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 2093c03d1d03SSatish Balay N = nrow++ - 1; high++; 20942d61bbb3SSatish Balay /* shift up all the later entries in this row */ 20952d61bbb3SSatish Balay for (ii=N; ii>=i; ii--) { 20962d61bbb3SSatish Balay rp[ii+1] = rp[ii]; 2097549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 20982d61bbb3SSatish Balay } 2099549d3d68SSatish Balay if (N>=i) { 2100549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 2101549d3d68SSatish Balay } 21022d61bbb3SSatish Balay rp[i] = bcol; 21032d61bbb3SSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 2104085a36d4SBarry Smith a->nz++; 21052d61bbb3SSatish Balay noinsert1:; 21062d61bbb3SSatish Balay low = i; 21072d61bbb3SSatish Balay } 21082d61bbb3SSatish Balay ailen[brow] = nrow; 21092d61bbb3SSatish Balay } 211088e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 21112d61bbb3SSatish Balay PetscFunctionReturn(0); 21122d61bbb3SSatish Balay } 21132d61bbb3SSatish Balay 2114db4efbfdSBarry Smith EXTERN PetscErrorCode MatSeqBAIJSetNumericFactorization(Mat,PetscTruth); 21152d61bbb3SSatish Balay 21164a2ae208SSatish Balay #undef __FUNCT__ 21174a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ" 2118dfbe8321SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,MatFactorInfo *info) 21192d61bbb3SSatish Balay { 21202d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inA->data; 21212d61bbb3SSatish Balay Mat outA; 2122dfbe8321SBarry Smith PetscErrorCode ierr; 2123667159a5SBarry Smith PetscTruth row_identity,col_identity; 21242d61bbb3SSatish Balay 21252d61bbb3SSatish Balay PetscFunctionBegin; 2126d3d32019SBarry Smith if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 2127667159a5SBarry Smith ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 2128667159a5SBarry Smith ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr); 2129667159a5SBarry Smith if (!row_identity || !col_identity) { 2130634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU"); 2131667159a5SBarry Smith } 21322d61bbb3SSatish Balay 21332d61bbb3SSatish Balay outA = inA; 21345c9eb25fSBarry Smith inA->factor = MAT_FACTOR_LU; 21352d61bbb3SSatish Balay 2136c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr); 2137cf242676SKris Buschelman 2138c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 2139c3122656SLisandro Dalcin if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); } 2140c3122656SLisandro Dalcin a->row = row; 2141c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 2142c3122656SLisandro Dalcin if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); } 2143c3122656SLisandro Dalcin a->col = col; 2144c38d4ed2SBarry Smith 2145c38d4ed2SBarry Smith /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 21464c49b128SBarry Smith ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr); 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr); 2148c38d4ed2SBarry Smith 2149db4efbfdSBarry Smith ierr = MatSeqBAIJSetNumericFactorization(inA,row_identity && col_identity);CHKERRQ(ierr); 2150c38d4ed2SBarry Smith if (!a->solve_work) { 2151d0f46423SBarry Smith ierr = PetscMalloc((inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr); 2152d0f46423SBarry Smith ierr = PetscLogObjectMemory(inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 2153c38d4ed2SBarry Smith } 2154*719d5645SBarry Smith ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr); 2155667159a5SBarry Smith 21562d61bbb3SSatish Balay PetscFunctionReturn(0); 21572d61bbb3SSatish Balay } 2158d9b7c43dSSatish Balay 2159fb2e594dSBarry Smith EXTERN_C_BEGIN 21604a2ae208SSatish Balay #undef __FUNCT__ 21614a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ" 2162be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices) 216327a8da17SBarry Smith { 216427a8da17SBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data; 2165c1ac3661SBarry Smith PetscInt i,nz,nbs; 216627a8da17SBarry Smith 216727a8da17SBarry Smith PetscFunctionBegin; 216814db4f74SSatish Balay nz = baij->maxnz/baij->bs2; 216914db4f74SSatish Balay nbs = baij->nbs; 217027a8da17SBarry Smith for (i=0; i<nz; i++) { 217127a8da17SBarry Smith baij->j[i] = indices[i]; 217227a8da17SBarry Smith } 217327a8da17SBarry Smith baij->nz = nz; 217414db4f74SSatish Balay for (i=0; i<nbs; i++) { 217527a8da17SBarry Smith baij->ilen[i] = baij->imax[i]; 217627a8da17SBarry Smith } 217727a8da17SBarry Smith 217827a8da17SBarry Smith PetscFunctionReturn(0); 217927a8da17SBarry Smith } 2180fb2e594dSBarry Smith EXTERN_C_END 218127a8da17SBarry Smith 21824a2ae208SSatish Balay #undef __FUNCT__ 21834a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices" 218427a8da17SBarry Smith /*@ 218527a8da17SBarry Smith MatSeqBAIJSetColumnIndices - Set the column indices for all the rows 218627a8da17SBarry Smith in the matrix. 218727a8da17SBarry Smith 218827a8da17SBarry Smith Input Parameters: 218927a8da17SBarry Smith + mat - the SeqBAIJ matrix 219027a8da17SBarry Smith - indices - the column indices 219127a8da17SBarry Smith 219215091d37SBarry Smith Level: advanced 219315091d37SBarry Smith 219427a8da17SBarry Smith Notes: 219527a8da17SBarry Smith This can be called if you have precomputed the nonzero structure of the 219627a8da17SBarry Smith matrix and want to provide it to the matrix object to improve the performance 219727a8da17SBarry Smith of the MatSetValues() operation. 219827a8da17SBarry Smith 219927a8da17SBarry Smith You MUST have set the correct numbers of nonzeros per row in the call to 2200d1be2dadSMatthew Knepley MatCreateSeqBAIJ(), and the columns indices MUST be sorted. 220127a8da17SBarry Smith 220227a8da17SBarry Smith MUST be called before any calls to MatSetValues(); 220327a8da17SBarry Smith 220427a8da17SBarry Smith @*/ 2205be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices) 220627a8da17SBarry Smith { 2207c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt *); 220827a8da17SBarry Smith 220927a8da17SBarry Smith PetscFunctionBegin; 22104482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 22114482741eSBarry Smith PetscValidPointer(indices,2); 2212c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr); 221327a8da17SBarry Smith if (f) { 221427a8da17SBarry Smith ierr = (*f)(mat,indices);CHKERRQ(ierr); 221527a8da17SBarry Smith } else { 2216634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices"); 221727a8da17SBarry Smith } 221827a8da17SBarry Smith PetscFunctionReturn(0); 221927a8da17SBarry Smith } 222027a8da17SBarry Smith 22214a2ae208SSatish Balay #undef __FUNCT__ 2222985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ" 2223985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[]) 2224273d9f13SBarry Smith { 2225273d9f13SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2226dfbe8321SBarry Smith PetscErrorCode ierr; 2227c1ac3661SBarry Smith PetscInt i,j,n,row,bs,*ai,*aj,mbs; 2228273d9f13SBarry Smith PetscReal atmp; 222987828ca2SBarry Smith PetscScalar *x,zero = 0.0; 2230273d9f13SBarry Smith MatScalar *aa; 2231c1ac3661SBarry Smith PetscInt ncols,brow,krow,kcol; 2232273d9f13SBarry Smith 2233273d9f13SBarry Smith PetscFunctionBegin; 2234273d9f13SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2235d0f46423SBarry Smith bs = A->rmap->bs; 2236273d9f13SBarry Smith aa = a->a; 2237273d9f13SBarry Smith ai = a->i; 2238273d9f13SBarry Smith aj = a->j; 2239273d9f13SBarry Smith mbs = a->mbs; 2240273d9f13SBarry Smith 22412dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 22421ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2243273d9f13SBarry Smith ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 2244d0f46423SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2245273d9f13SBarry Smith for (i=0; i<mbs; i++) { 2246273d9f13SBarry Smith ncols = ai[1] - ai[0]; ai++; 2247273d9f13SBarry Smith brow = bs*i; 2248273d9f13SBarry Smith for (j=0; j<ncols; j++){ 2249273d9f13SBarry Smith for (kcol=0; kcol<bs; kcol++){ 2250273d9f13SBarry Smith for (krow=0; krow<bs; krow++){ 2251273d9f13SBarry Smith atmp = PetscAbsScalar(*aa);aa++; 2252273d9f13SBarry Smith row = brow + krow; /* row index */ 2253a83599f4SBarry Smith /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */ 2254985db425SBarry Smith if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;} 2255273d9f13SBarry Smith } 2256273d9f13SBarry Smith } 2257273d9f13SBarry Smith aj++; 2258273d9f13SBarry Smith } 2259273d9f13SBarry Smith } 22601ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2261273d9f13SBarry Smith PetscFunctionReturn(0); 2262273d9f13SBarry Smith } 2263273d9f13SBarry Smith 22644a2ae208SSatish Balay #undef __FUNCT__ 22653c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ" 22663c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str) 22673c896bc6SHong Zhang { 22683c896bc6SHong Zhang PetscErrorCode ierr; 22693c896bc6SHong Zhang 22703c896bc6SHong Zhang PetscFunctionBegin; 22713c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 22723c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 22733c896bc6SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 22743c896bc6SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data; 22753c896bc6SHong Zhang 2276d0f46423SBarry Smith if (a->i[A->rmap->N] != b->i[B->rmap->N]) { 22773c896bc6SHong Zhang SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 22783c896bc6SHong Zhang } 2279d0f46423SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr); 22803c896bc6SHong Zhang } else { 22813c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 22823c896bc6SHong Zhang } 22833c896bc6SHong Zhang PetscFunctionReturn(0); 22843c896bc6SHong Zhang } 22853c896bc6SHong Zhang 22863c896bc6SHong Zhang #undef __FUNCT__ 22874a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ" 2288dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A) 2289273d9f13SBarry Smith { 2290dfbe8321SBarry Smith PetscErrorCode ierr; 2291273d9f13SBarry Smith 2292273d9f13SBarry Smith PetscFunctionBegin; 2293db4efbfdSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr); 2294273d9f13SBarry Smith PetscFunctionReturn(0); 2295273d9f13SBarry Smith } 2296273d9f13SBarry Smith 22974a2ae208SSatish Balay #undef __FUNCT__ 22984a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ" 2299dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2300f2a5309cSSatish Balay { 2301f2a5309cSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2302f2a5309cSSatish Balay PetscFunctionBegin; 2303f2a5309cSSatish Balay *array = a->a; 2304f2a5309cSSatish Balay PetscFunctionReturn(0); 2305f2a5309cSSatish Balay } 2306f2a5309cSSatish Balay 23074a2ae208SSatish Balay #undef __FUNCT__ 23084a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ" 2309dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2310f2a5309cSSatish Balay { 2311f2a5309cSSatish Balay PetscFunctionBegin; 2312f2a5309cSSatish Balay PetscFunctionReturn(0); 2313f2a5309cSSatish Balay } 2314f2a5309cSSatish Balay 231542ee4b1aSHong Zhang #include "petscblaslapack.h" 231642ee4b1aSHong Zhang #undef __FUNCT__ 231742ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ" 2318f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 231942ee4b1aSHong Zhang { 232042ee4b1aSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data; 2321dfbe8321SBarry Smith PetscErrorCode ierr; 2322d0f46423SBarry Smith PetscInt i,bs=Y->rmap->bs,j,bs2; 23230805154bSBarry Smith PetscBLASInt one=1,bnz = PetscBLASIntCast(x->nz); 232442ee4b1aSHong Zhang 232542ee4b1aSHong Zhang PetscFunctionBegin; 232642ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 2327f4df32b1SMatthew Knepley PetscScalar alpha = a; 2328f4df32b1SMatthew Knepley BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 2329c537a176SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2330c4319e64SHong Zhang if (y->xtoy && y->XtoY != X) { 2331c4319e64SHong Zhang ierr = PetscFree(y->xtoy);CHKERRQ(ierr); 2332c4319e64SHong Zhang ierr = MatDestroy(y->XtoY);CHKERRQ(ierr); 2333c537a176SHong Zhang } 2334c4319e64SHong Zhang if (!y->xtoy) { /* get xtoy */ 2335c4319e64SHong Zhang ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr); 2336c4319e64SHong Zhang y->XtoY = X; 2337c537a176SHong Zhang } 2338c4319e64SHong Zhang bs2 = bs*bs; 2339c537a176SHong Zhang for (i=0; i<x->nz; i++) { 2340c4319e64SHong Zhang j = 0; 2341c4319e64SHong Zhang while (j < bs2){ 2342f4df32b1SMatthew Knepley y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]); 2343c4319e64SHong Zhang j++; 2344c537a176SHong Zhang } 2345c4319e64SHong Zhang } 23461e2582c4SBarry Smith ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr); 234742ee4b1aSHong Zhang } else { 2348f4df32b1SMatthew Knepley ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 234942ee4b1aSHong Zhang } 235042ee4b1aSHong Zhang PetscFunctionReturn(0); 235142ee4b1aSHong Zhang } 235242ee4b1aSHong Zhang 235399cafbc1SBarry Smith #undef __FUNCT__ 235499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ" 235599cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 235699cafbc1SBarry Smith { 235799cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 235899cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2359dd6ea824SBarry Smith MatScalar *aa = a->a; 236099cafbc1SBarry Smith 236199cafbc1SBarry Smith PetscFunctionBegin; 236299cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 236399cafbc1SBarry Smith PetscFunctionReturn(0); 236499cafbc1SBarry Smith } 236599cafbc1SBarry Smith 236699cafbc1SBarry Smith #undef __FUNCT__ 236799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ" 236899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 236999cafbc1SBarry Smith { 237099cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 237199cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2372dd6ea824SBarry Smith MatScalar *aa = a->a; 237399cafbc1SBarry Smith 237499cafbc1SBarry Smith PetscFunctionBegin; 237599cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 237699cafbc1SBarry Smith PetscFunctionReturn(0); 237799cafbc1SBarry Smith } 237899cafbc1SBarry Smith 237999cafbc1SBarry Smith 23802593348eSBarry Smith /* -------------------------------------------------------------------*/ 2381cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 2382cc2dc46cSBarry Smith MatGetRow_SeqBAIJ, 2383cc2dc46cSBarry Smith MatRestoreRow_SeqBAIJ, 2384cc2dc46cSBarry Smith MatMult_SeqBAIJ_N, 238597304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N, 23867c922b88SBarry Smith MatMultTranspose_SeqBAIJ, 23877c922b88SBarry Smith MatMultTransposeAdd_SeqBAIJ, 2388db4efbfdSBarry Smith 0, 2389cc2dc46cSBarry Smith 0, 2390cc2dc46cSBarry Smith 0, 239197304618SKris Buschelman /*10*/ 0, 2392cc2dc46cSBarry Smith MatLUFactor_SeqBAIJ, 2393cc2dc46cSBarry Smith 0, 2394b6490206SBarry Smith 0, 2395f2501298SSatish Balay MatTranspose_SeqBAIJ, 239697304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ, 2397cc2dc46cSBarry Smith MatEqual_SeqBAIJ, 2398cc2dc46cSBarry Smith MatGetDiagonal_SeqBAIJ, 2399cc2dc46cSBarry Smith MatDiagonalScale_SeqBAIJ, 2400cc2dc46cSBarry Smith MatNorm_SeqBAIJ, 240197304618SKris Buschelman /*20*/ 0, 2402cc2dc46cSBarry Smith MatAssemblyEnd_SeqBAIJ, 2403cc2dc46cSBarry Smith 0, 2404cc2dc46cSBarry Smith MatSetOption_SeqBAIJ, 2405cc2dc46cSBarry Smith MatZeroEntries_SeqBAIJ, 240697304618SKris Buschelman /*25*/ MatZeroRows_SeqBAIJ, 2407db4efbfdSBarry Smith 0, 2408db4efbfdSBarry Smith 0, 2409db4efbfdSBarry Smith 0, 2410db4efbfdSBarry Smith 0, 241197304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqBAIJ, 2412db4efbfdSBarry Smith 0, 2413db4efbfdSBarry Smith 0, 2414f2a5309cSSatish Balay MatGetArray_SeqBAIJ, 2415f2a5309cSSatish Balay MatRestoreArray_SeqBAIJ, 241697304618SKris Buschelman /*35*/ MatDuplicate_SeqBAIJ, 2417cc2dc46cSBarry Smith 0, 2418cc2dc46cSBarry Smith 0, 2419cc2dc46cSBarry Smith MatILUFactor_SeqBAIJ, 2420cc2dc46cSBarry Smith 0, 242197304618SKris Buschelman /*40*/ MatAXPY_SeqBAIJ, 2422cc2dc46cSBarry Smith MatGetSubMatrices_SeqBAIJ, 2423cc2dc46cSBarry Smith MatIncreaseOverlap_SeqBAIJ, 2424cc2dc46cSBarry Smith MatGetValues_SeqBAIJ, 24253c896bc6SHong Zhang MatCopy_SeqBAIJ, 24268c07d4e3SBarry Smith /*45*/ 0, 2427cc2dc46cSBarry Smith MatScale_SeqBAIJ, 2428cc2dc46cSBarry Smith 0, 2429cc2dc46cSBarry Smith 0, 2430cc2dc46cSBarry Smith 0, 2431521d7252SBarry Smith /*50*/ 0, 24323b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 243392c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 2434cc2dc46cSBarry Smith 0, 2435cc2dc46cSBarry Smith 0, 243697304618SKris Buschelman /*55*/ 0, 2437cc2dc46cSBarry Smith 0, 2438cc2dc46cSBarry Smith 0, 2439cc2dc46cSBarry Smith 0, 2440d3825aa8SBarry Smith MatSetValuesBlocked_SeqBAIJ, 244197304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqBAIJ, 2442b9b97703SBarry Smith MatDestroy_SeqBAIJ, 2443b9b97703SBarry Smith MatView_SeqBAIJ, 2444357abbc8SBarry Smith 0, 2445273d9f13SBarry Smith 0, 244697304618SKris Buschelman /*65*/ 0, 2447273d9f13SBarry Smith 0, 2448273d9f13SBarry Smith 0, 2449273d9f13SBarry Smith 0, 2450273d9f13SBarry Smith 0, 2451985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqBAIJ, 245297304618SKris Buschelman MatConvert_Basic, 2453273d9f13SBarry Smith 0, 245497304618SKris Buschelman 0, 245597304618SKris Buschelman 0, 245697304618SKris Buschelman /*75*/ 0, 245797304618SKris Buschelman 0, 245897304618SKris Buschelman 0, 245997304618SKris Buschelman 0, 246097304618SKris Buschelman 0, 246197304618SKris Buschelman /*80*/ 0, 246297304618SKris Buschelman 0, 246397304618SKris Buschelman 0, 246497304618SKris Buschelman 0, 2465865e5f61SKris Buschelman MatLoad_SeqBAIJ, 2466865e5f61SKris Buschelman /*85*/ 0, 2467b01c7715SBarry Smith 0, 2468b01c7715SBarry Smith 0, 2469b01c7715SBarry Smith 0, 2470865e5f61SKris Buschelman 0, 2471865e5f61SKris Buschelman /*90*/ 0, 2472865e5f61SKris Buschelman 0, 2473865e5f61SKris Buschelman 0, 2474865e5f61SKris Buschelman 0, 2475865e5f61SKris Buschelman 0, 2476865e5f61SKris Buschelman /*95*/ 0, 2477865e5f61SKris Buschelman 0, 2478865e5f61SKris Buschelman 0, 247999cafbc1SBarry Smith 0, 248099cafbc1SBarry Smith 0, 248199cafbc1SBarry Smith /*100*/0, 248299cafbc1SBarry Smith 0, 248399cafbc1SBarry Smith 0, 248499cafbc1SBarry Smith 0, 248599cafbc1SBarry Smith 0, 248699cafbc1SBarry Smith /*105*/0, 248799cafbc1SBarry Smith MatRealPart_SeqBAIJ, 24882af78befSBarry Smith MatImaginaryPart_SeqBAIJ, 24892af78befSBarry Smith 0, 24902af78befSBarry Smith 0, 24912af78befSBarry Smith /*110*/0, 24922af78befSBarry Smith 0, 24932af78befSBarry Smith 0, 24942af78befSBarry Smith 0, 24952af78befSBarry Smith MatMissingDiagonal_SeqBAIJ 24962af78befSBarry Smith /*115*/ 249799cafbc1SBarry Smith }; 24982593348eSBarry Smith 24993e90b805SBarry Smith EXTERN_C_BEGIN 25004a2ae208SSatish Balay #undef __FUNCT__ 25014a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ" 2502be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat) 25033e90b805SBarry Smith { 25043e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 2505d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 2506dfbe8321SBarry Smith PetscErrorCode ierr; 25073e90b805SBarry Smith 25083e90b805SBarry Smith PetscFunctionBegin; 25093e90b805SBarry Smith if (aij->nonew != 1) { 2510512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25113e90b805SBarry Smith } 25123e90b805SBarry Smith 25133e90b805SBarry Smith /* allocate space for values if not already there */ 25143e90b805SBarry Smith if (!aij->saved_values) { 251587828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr); 25163e90b805SBarry Smith } 25173e90b805SBarry Smith 25183e90b805SBarry Smith /* copy values over */ 251987828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25203e90b805SBarry Smith PetscFunctionReturn(0); 25213e90b805SBarry Smith } 25223e90b805SBarry Smith EXTERN_C_END 25233e90b805SBarry Smith 25243e90b805SBarry Smith EXTERN_C_BEGIN 25254a2ae208SSatish Balay #undef __FUNCT__ 25264a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ" 2527be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat) 25283e90b805SBarry Smith { 25293e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 25306849ba73SBarry Smith PetscErrorCode ierr; 2531d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 25323e90b805SBarry Smith 25333e90b805SBarry Smith PetscFunctionBegin; 25343e90b805SBarry Smith if (aij->nonew != 1) { 2535512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25363e90b805SBarry Smith } 25373e90b805SBarry Smith if (!aij->saved_values) { 2538634064b4SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 25393e90b805SBarry Smith } 25403e90b805SBarry Smith 25413e90b805SBarry Smith /* copy values over */ 254287828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25433e90b805SBarry Smith PetscFunctionReturn(0); 25443e90b805SBarry Smith } 25453e90b805SBarry Smith EXTERN_C_END 25463e90b805SBarry Smith 2547273d9f13SBarry Smith EXTERN_C_BEGIN 2548f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 2549f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*); 2550273d9f13SBarry Smith EXTERN_C_END 2551273d9f13SBarry Smith 2552273d9f13SBarry Smith EXTERN_C_BEGIN 25534a2ae208SSatish Balay #undef __FUNCT__ 2554a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ" 2555be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 2556a23d5eceSKris Buschelman { 2557a23d5eceSKris Buschelman Mat_SeqBAIJ *b; 25586849ba73SBarry Smith PetscErrorCode ierr; 2559db4efbfdSBarry Smith PetscInt i,mbs,nbs,bs2,newbs = PetscAbs(bs); 2560ab93d7beSBarry Smith PetscTruth flg,skipallocation = PETSC_FALSE; 2561a23d5eceSKris Buschelman 2562a23d5eceSKris Buschelman PetscFunctionBegin; 2563a23d5eceSKris Buschelman 2564ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 2565ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 2566ab93d7beSBarry Smith nz = 0; 2567ab93d7beSBarry Smith } 25688c07d4e3SBarry Smith 2569db4efbfdSBarry Smith if (bs < 0) { 25707adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr); 2571db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 25728c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2573db4efbfdSBarry Smith bs = PetscAbs(bs); 2574db4efbfdSBarry Smith } 2575a23d5eceSKris Buschelman if (nnz && newbs != bs) { 2576634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz"); 2577a23d5eceSKris Buschelman } 2578a23d5eceSKris Buschelman bs = newbs; 2579a23d5eceSKris Buschelman 2580d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 2581d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2582d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2583899cda47SBarry Smith 2584899cda47SBarry Smith B->preallocated = PETSC_TRUE; 2585899cda47SBarry Smith 2586d0f46423SBarry Smith mbs = B->rmap->n/bs; 2587d0f46423SBarry Smith nbs = B->cmap->n/bs; 2588a23d5eceSKris Buschelman bs2 = bs*bs; 2589a23d5eceSKris Buschelman 2590d0f46423SBarry Smith if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) { 2591d0f46423SBarry Smith SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs); 2592a23d5eceSKris Buschelman } 2593a23d5eceSKris Buschelman 2594a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 259577431f27SBarry Smith if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 2596a23d5eceSKris Buschelman if (nnz) { 2597a23d5eceSKris Buschelman for (i=0; i<mbs; i++) { 259877431f27SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 259977431f27SBarry Smith if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs); 2600a23d5eceSKris Buschelman } 2601a23d5eceSKris Buschelman } 2602a23d5eceSKris Buschelman 2603a23d5eceSKris Buschelman b = (Mat_SeqBAIJ*)B->data; 26047adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr); 26058c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 26068c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 26078c07d4e3SBarry Smith 2608a23d5eceSKris Buschelman if (!flg) { 2609a23d5eceSKris Buschelman switch (bs) { 2610a23d5eceSKris Buschelman case 1: 2611a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_1; 2612a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_1; 26136d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_1; 2614a23d5eceSKris Buschelman break; 2615a23d5eceSKris Buschelman case 2: 2616a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_2; 2617a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_2; 2618b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_2; 2619a23d5eceSKris Buschelman break; 2620a23d5eceSKris Buschelman case 3: 2621a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_3; 2622a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_3; 2623b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_3; 2624a23d5eceSKris Buschelman break; 2625a23d5eceSKris Buschelman case 4: 2626a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_4; 2627a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_4; 2628b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_4; 2629a23d5eceSKris Buschelman break; 2630a23d5eceSKris Buschelman case 5: 2631a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_5; 2632a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_5; 2633b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_5; 2634a23d5eceSKris Buschelman break; 2635a23d5eceSKris Buschelman case 6: 2636a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_6; 2637a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_6; 26386d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_6; 2639a23d5eceSKris Buschelman break; 2640a23d5eceSKris Buschelman case 7: 2641a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_7; 2642a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_7; 26436d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_7; 2644a23d5eceSKris Buschelman break; 2645a23d5eceSKris Buschelman default: 2646a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_N; 2647a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_N; 2648a23d5eceSKris Buschelman break; 2649a23d5eceSKris Buschelman } 2650a23d5eceSKris Buschelman } 2651d0f46423SBarry Smith B->rmap->bs = bs; 2652a23d5eceSKris Buschelman b->mbs = mbs; 2653a23d5eceSKris Buschelman b->nbs = nbs; 2654ab93d7beSBarry Smith if (!skipallocation) { 26552ee49352SLisandro Dalcin if (!b->imax) { 2656ab93d7beSBarry Smith ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr); 26572ee49352SLisandro Dalcin } 2658ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 2659ab93d7beSBarry Smith for (i=0; i<mbs; i++) { b->ilen[i] = 0;} 2660a23d5eceSKris Buschelman if (!nnz) { 2661a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2662a23d5eceSKris Buschelman else if (nz <= 0) nz = 1; 2663a23d5eceSKris Buschelman for (i=0; i<mbs; i++) b->imax[i] = nz; 2664a23d5eceSKris Buschelman nz = nz*mbs; 2665a23d5eceSKris Buschelman } else { 2666a23d5eceSKris Buschelman nz = 0; 2667a23d5eceSKris Buschelman for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 2668a23d5eceSKris Buschelman } 2669a23d5eceSKris Buschelman 2670a23d5eceSKris Buschelman /* allocate the matrix space */ 26712ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 2672d0f46423SBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap->N+1,PetscInt,&b->i);CHKERRQ(ierr); 2673d0f46423SBarry Smith ierr = PetscLogObjectMemory(B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2674a23d5eceSKris Buschelman ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 2675c1ac3661SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 2676a23d5eceSKris Buschelman b->singlemalloc = PETSC_TRUE; 2677a23d5eceSKris Buschelman b->i[0] = 0; 2678a23d5eceSKris Buschelman for (i=1; i<mbs+1; i++) { 2679a23d5eceSKris Buschelman b->i[i] = b->i[i-1] + b->imax[i-1]; 2680a23d5eceSKris Buschelman } 2681e6b907acSBarry Smith b->free_a = PETSC_TRUE; 2682e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 2683e811da20SHong Zhang } else { 2684e6b907acSBarry Smith b->free_a = PETSC_FALSE; 2685e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 2686ab93d7beSBarry Smith } 2687a23d5eceSKris Buschelman 2688d0f46423SBarry Smith B->rmap->bs = bs; 2689a23d5eceSKris Buschelman b->bs2 = bs2; 2690a23d5eceSKris Buschelman b->mbs = mbs; 2691a23d5eceSKris Buschelman b->nz = 0; 2692a23d5eceSKris Buschelman b->maxnz = nz*bs2; 2693a23d5eceSKris Buschelman B->info.nz_unneeded = (PetscReal)b->maxnz; 2694a23d5eceSKris Buschelman PetscFunctionReturn(0); 2695a23d5eceSKris Buschelman } 2696a23d5eceSKris Buschelman EXTERN_C_END 2697a23d5eceSKris Buschelman 2698b24902e0SBarry Smith EXTERN_C_BEGIN 2699725b52f3SLisandro Dalcin #undef __FUNCT__ 2700725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ" 2701cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2702725b52f3SLisandro Dalcin { 2703725b52f3SLisandro Dalcin PetscInt i,m,nz,nz_max=0,*nnz; 2704725b52f3SLisandro Dalcin PetscScalar *values=0; 2705725b52f3SLisandro Dalcin PetscErrorCode ierr; 2706725b52f3SLisandro Dalcin 2707725b52f3SLisandro Dalcin PetscFunctionBegin; 2708725b52f3SLisandro Dalcin 2709725b52f3SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2710d0f46423SBarry Smith B->rmap->bs = bs; 2711d0f46423SBarry Smith B->cmap->bs = bs; 2712d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2713d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2714d0f46423SBarry Smith m = B->rmap->n/bs; 2715725b52f3SLisandro Dalcin 2716cf12db73SBarry Smith if (ii[0] != 0) { SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); } 2717725b52f3SLisandro Dalcin ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr); 2718725b52f3SLisandro Dalcin for(i=0; i<m; i++) { 2719cf12db73SBarry Smith nz = ii[i+1]- ii[i]; 2720725b52f3SLisandro Dalcin if (nz < 0) { SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); } 2721725b52f3SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 2722725b52f3SLisandro Dalcin nnz[i] = nz; 2723725b52f3SLisandro Dalcin } 2724725b52f3SLisandro Dalcin ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 2725725b52f3SLisandro Dalcin ierr = PetscFree(nnz);CHKERRQ(ierr); 2726725b52f3SLisandro Dalcin 2727725b52f3SLisandro Dalcin values = (PetscScalar*)V; 2728725b52f3SLisandro Dalcin if (!values) { 2729725b52f3SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2730725b52f3SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2731725b52f3SLisandro Dalcin } 2732725b52f3SLisandro Dalcin for (i=0; i<m; i++) { 2733cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2734cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2735cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2736725b52f3SLisandro Dalcin ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2737725b52f3SLisandro Dalcin } 2738725b52f3SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2739725b52f3SLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2740725b52f3SLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2741725b52f3SLisandro Dalcin 2742725b52f3SLisandro Dalcin PetscFunctionReturn(0); 2743725b52f3SLisandro Dalcin } 2744725b52f3SLisandro Dalcin EXTERN_C_END 2745725b52f3SLisandro Dalcin 2746725b52f3SLisandro Dalcin 2747207126cbSBarry Smith EXTERN_C_BEGIN 2748b24902e0SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*); 2749db4efbfdSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable_seqbaij_petsc(Mat,MatFactorType,Mat*); 2750b24902e0SBarry Smith EXTERN_C_END 2751b24902e0SBarry Smith 27520bad9183SKris Buschelman /*MC 2753fafad747SKris Buschelman MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 27540bad9183SKris Buschelman block sparse compressed row format. 27550bad9183SKris Buschelman 27560bad9183SKris Buschelman Options Database Keys: 27570bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions() 27580bad9183SKris Buschelman 27590bad9183SKris Buschelman Level: beginner 27600bad9183SKris Buschelman 2761f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ() 27620bad9183SKris Buschelman M*/ 27630bad9183SKris Buschelman 2764b24902e0SBarry Smith 2765a23d5eceSKris Buschelman EXTERN_C_BEGIN 2766a23d5eceSKris Buschelman #undef __FUNCT__ 27674a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ" 2768be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B) 27692593348eSBarry Smith { 2770dfbe8321SBarry Smith PetscErrorCode ierr; 2771c1ac3661SBarry Smith PetscMPIInt size; 2772b6490206SBarry Smith Mat_SeqBAIJ *b; 27733b2fbd54SBarry Smith 27743a40ed3dSBarry Smith PetscFunctionBegin; 27757adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 277629bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 2777b6490206SBarry Smith 277838f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr); 2779b0a32e0cSBarry Smith B->data = (void*)b; 2780549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 278190f02eecSBarry Smith B->mapping = 0; 27822593348eSBarry Smith b->row = 0; 27832593348eSBarry Smith b->col = 0; 2784e51c0b9cSSatish Balay b->icol = 0; 27852593348eSBarry Smith b->reallocs = 0; 27863e90b805SBarry Smith b->saved_values = 0; 27872593348eSBarry Smith 2788c4992f7dSBarry Smith b->roworiented = PETSC_TRUE; 27892593348eSBarry Smith b->nonew = 0; 27902593348eSBarry Smith b->diag = 0; 27912593348eSBarry Smith b->solve_work = 0; 2792de6a44a3SBarry Smith b->mult_work = 0; 27932a1b7f2aSHong Zhang B->spptr = 0; 27940e6d2581SBarry Smith B->info.nz_unneeded = (PetscReal)b->maxnz; 2795883fce79SBarry Smith b->keepzeroedrows = PETSC_FALSE; 2796c4319e64SHong Zhang b->xtoy = 0; 2797c4319e64SHong Zhang b->XtoY = 0; 279873e7a558SHong Zhang b->compressedrow.use = PETSC_FALSE; 279926e093fcSHong Zhang b->compressedrow.nrows = 0; 280073e7a558SHong Zhang b->compressedrow.i = PETSC_NULL; 280173e7a558SHong Zhang b->compressedrow.rindex = PETSC_NULL; 280273e7a558SHong Zhang b->compressedrow.checked = PETSC_FALSE; 280388e51ccdSHong Zhang B->same_nonzero = PETSC_FALSE; 28044e220ebcSLois Curfman McInnes 2805db4efbfdSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactorAvailable_seqbaij_petsc_C", 2806db4efbfdSBarry Smith "MatGetFactorAvailable_seqbaij_petsc", 2807db4efbfdSBarry Smith MatGetFactorAvailable_seqbaij_petsc);CHKERRQ(ierr); 2808b24902e0SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C", 2809b24902e0SBarry Smith "MatGetFactor_seqbaij_petsc", 2810b24902e0SBarry Smith MatGetFactor_seqbaij_petsc);CHKERRQ(ierr); 281143516a2dSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C", 281243516a2dSKris Buschelman "MatInvertBlockDiagonal_SeqBAIJ", 281343516a2dSKris Buschelman MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr); 2814f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 28153e90b805SBarry Smith "MatStoreValues_SeqBAIJ", 2816bc4b532fSSatish Balay MatStoreValues_SeqBAIJ);CHKERRQ(ierr); 2817f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 28183e90b805SBarry Smith "MatRetrieveValues_SeqBAIJ", 2819bc4b532fSSatish Balay MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr); 2820f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C", 282127a8da17SBarry Smith "MatSeqBAIJSetColumnIndices_SeqBAIJ", 2822bc4b532fSSatish Balay MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr); 2823a6175056SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C", 2824273d9f13SBarry Smith "MatConvert_SeqBAIJ_SeqAIJ", 2825273d9f13SBarry Smith MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr); 2826a0e1a404SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C", 2827a0e1a404SHong Zhang "MatConvert_SeqBAIJ_SeqSBAIJ", 2828a0e1a404SHong Zhang MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr); 2829a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C", 2830a23d5eceSKris Buschelman "MatSeqBAIJSetPreallocation_SeqBAIJ", 2831a23d5eceSKris Buschelman MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr); 2832725b52f3SLisandro Dalcin ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C", 2833725b52f3SLisandro Dalcin "MatSeqBAIJSetPreallocationCSR_SeqBAIJ", 2834725b52f3SLisandro Dalcin MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr); 283517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr); 28363a40ed3dSBarry Smith PetscFunctionReturn(0); 28372593348eSBarry Smith } 2838273d9f13SBarry Smith EXTERN_C_END 28392593348eSBarry Smith 28404a2ae208SSatish Balay #undef __FUNCT__ 2841b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ" 2842*719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues) 28432593348eSBarry Smith { 2844b24902e0SBarry Smith Mat_SeqBAIJ *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data; 28456849ba73SBarry Smith PetscErrorCode ierr; 2846a96a251dSBarry Smith PetscInt i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2; 2847de6a44a3SBarry Smith 28483a40ed3dSBarry Smith PetscFunctionBegin; 284929bbc08cSBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix"); 28502593348eSBarry Smith 285133b91e9fSSatish Balay ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr); 2852b6490206SBarry Smith for (i=0; i<mbs; i++) { 28532593348eSBarry Smith c->imax[i] = a->imax[i]; 28542593348eSBarry Smith c->ilen[i] = a->ilen[i]; 28552593348eSBarry Smith } 28562593348eSBarry Smith 28572593348eSBarry Smith /* allocate the matrix space */ 2858a96a251dSBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr); 2859c4992f7dSBarry Smith c->singlemalloc = PETSC_TRUE; 2860c1ac3661SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2861b6490206SBarry Smith if (mbs > 0) { 2862c1ac3661SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 28632e8a6d31SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 2864549d3d68SSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28652e8a6d31SBarry Smith } else { 2866549d3d68SSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28672593348eSBarry Smith } 28682593348eSBarry Smith } 28692593348eSBarry Smith c->roworiented = a->roworiented; 28702593348eSBarry Smith c->nonew = a->nonew; 2871d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)A)->comm,A->rmap,C->rmap);CHKERRQ(ierr); 2872d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)A)->comm,A->cmap,C->cmap);CHKERRQ(ierr); 28735c9eb25fSBarry Smith c->bs2 = a->bs2; 28745c9eb25fSBarry Smith c->mbs = a->mbs; 28755c9eb25fSBarry Smith c->nbs = a->nbs; 28762593348eSBarry Smith 28772593348eSBarry Smith if (a->diag) { 2878c1ac3661SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr); 287952e6d16bSBarry Smith ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2880b6490206SBarry Smith for (i=0; i<mbs; i++) { 28812593348eSBarry Smith c->diag[i] = a->diag[i]; 28822593348eSBarry Smith } 288398305bb5SBarry Smith } else c->diag = 0; 28842593348eSBarry Smith c->nz = a->nz; 28852593348eSBarry Smith c->maxnz = a->maxnz; 28862593348eSBarry Smith c->solve_work = 0; 28877fc0212eSBarry Smith c->mult_work = 0; 2888e6b907acSBarry Smith c->free_a = PETSC_TRUE; 2889e6b907acSBarry Smith c->free_ij = PETSC_TRUE; 2890273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2891273d9f13SBarry Smith C->assembled = PETSC_TRUE; 289288e51ccdSHong Zhang 289388e51ccdSHong Zhang c->compressedrow.use = a->compressedrow.use; 289488e51ccdSHong Zhang c->compressedrow.nrows = a->compressedrow.nrows; 289588e51ccdSHong Zhang c->compressedrow.checked = a->compressedrow.checked; 289688e51ccdSHong Zhang if ( a->compressedrow.checked && a->compressedrow.use){ 289788e51ccdSHong Zhang i = a->compressedrow.nrows; 289888e51ccdSHong Zhang ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr); 289988e51ccdSHong Zhang c->compressedrow.rindex = c->compressedrow.i + i + 1; 290088e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr); 290188e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr); 290288e51ccdSHong Zhang } else { 290388e51ccdSHong Zhang c->compressedrow.use = PETSC_FALSE; 290488e51ccdSHong Zhang c->compressedrow.i = PETSC_NULL; 290588e51ccdSHong Zhang c->compressedrow.rindex = PETSC_NULL; 290688e51ccdSHong Zhang } 290788e51ccdSHong Zhang C->same_nonzero = A->same_nonzero; 29087adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 29093a40ed3dSBarry Smith PetscFunctionReturn(0); 29102593348eSBarry Smith } 29112593348eSBarry Smith 29124a2ae208SSatish Balay #undef __FUNCT__ 2913b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ" 2914b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 2915b24902e0SBarry Smith { 2916b24902e0SBarry Smith PetscErrorCode ierr; 2917b24902e0SBarry Smith 2918b24902e0SBarry Smith PetscFunctionBegin; 29195c9eb25fSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr); 2920d0f46423SBarry Smith ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 29215c9eb25fSBarry Smith ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr); 2922*719d5645SBarry Smith ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues); 2923b24902e0SBarry Smith PetscFunctionReturn(0); 2924b24902e0SBarry Smith } 2925b24902e0SBarry Smith 2926b24902e0SBarry Smith #undef __FUNCT__ 29274a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ" 2928a313700dSBarry Smith PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, const MatType type,Mat *A) 29292593348eSBarry Smith { 2930b6490206SBarry Smith Mat_SeqBAIJ *a; 29312593348eSBarry Smith Mat B; 29326849ba73SBarry Smith PetscErrorCode ierr; 2933b24ad042SBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs=1; 2934c1ac3661SBarry Smith PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 2935c1ac3661SBarry Smith PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows; 2936c1ac3661SBarry Smith PetscInt *masked,nmask,tmp,bs2,ishift; 2937b24ad042SBarry Smith PetscMPIInt size; 2938b24ad042SBarry Smith int fd; 293987828ca2SBarry Smith PetscScalar *aa; 294019bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 29412593348eSBarry Smith 29423a40ed3dSBarry Smith PetscFunctionBegin; 29438c07d4e3SBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr); 29448c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 29458c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2946de6a44a3SBarry Smith bs2 = bs*bs; 2947b6490206SBarry Smith 2948d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 294929bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 2950b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 29510752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 2952552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 29532593348eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 29542593348eSBarry Smith 2955d64ed03dSBarry Smith if (header[3] < 0) { 295629bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ"); 2957d64ed03dSBarry Smith } 2958d64ed03dSBarry Smith 295929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 296035aab85fSBarry Smith 296135aab85fSBarry Smith /* 296235aab85fSBarry Smith This code adds extra rows to make sure the number of rows is 296335aab85fSBarry Smith divisible by the blocksize 296435aab85fSBarry Smith */ 2965b6490206SBarry Smith mbs = M/bs; 296635aab85fSBarry Smith extra_rows = bs - M + bs*(mbs); 296735aab85fSBarry Smith if (extra_rows == bs) extra_rows = 0; 296835aab85fSBarry Smith else mbs++; 296935aab85fSBarry Smith if (extra_rows) { 29701e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 297135aab85fSBarry Smith } 2972b6490206SBarry Smith 29732593348eSBarry Smith /* read in row lengths */ 2974c1ac3661SBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 29750752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 297635aab85fSBarry Smith for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 29772593348eSBarry Smith 2978b6490206SBarry Smith /* read in column indices */ 2979c1ac3661SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr); 29800752156aSBarry Smith ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 298135aab85fSBarry Smith for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 2982b6490206SBarry Smith 2983b6490206SBarry Smith /* loop over row lengths determining block row lengths */ 2984c1ac3661SBarry Smith ierr = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr); 2985c1ac3661SBarry Smith ierr = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr); 2986c1ac3661SBarry Smith ierr = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 2987c1ac3661SBarry Smith ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 298835aab85fSBarry Smith masked = mask + mbs; 2989b6490206SBarry Smith rowcount = 0; nzcount = 0; 2990b6490206SBarry Smith for (i=0; i<mbs; i++) { 299135aab85fSBarry Smith nmask = 0; 2992b6490206SBarry Smith for (j=0; j<bs; j++) { 2993b6490206SBarry Smith kmax = rowlengths[rowcount]; 2994b6490206SBarry Smith for (k=0; k<kmax; k++) { 299535aab85fSBarry Smith tmp = jj[nzcount++]/bs; 299635aab85fSBarry Smith if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 2997b6490206SBarry Smith } 2998b6490206SBarry Smith rowcount++; 2999b6490206SBarry Smith } 300035aab85fSBarry Smith browlengths[i] += nmask; 300135aab85fSBarry Smith /* zero out the mask elements we set */ 300235aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3003b6490206SBarry Smith } 3004b6490206SBarry Smith 30052593348eSBarry Smith /* create our matrix */ 3006f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&B); 3007f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows); 300878ae41b4SKris Buschelman ierr = MatSetType(B,type);CHKERRQ(ierr); 3009ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr); 3010b6490206SBarry Smith a = (Mat_SeqBAIJ*)B->data; 30112593348eSBarry Smith 30122593348eSBarry Smith /* set matrix "i" values */ 3013de6a44a3SBarry Smith a->i[0] = 0; 3014b6490206SBarry Smith for (i=1; i<= mbs; i++) { 3015b6490206SBarry Smith a->i[i] = a->i[i-1] + browlengths[i-1]; 3016b6490206SBarry Smith a->ilen[i-1] = browlengths[i-1]; 30172593348eSBarry Smith } 3018b6490206SBarry Smith a->nz = 0; 3019b6490206SBarry Smith for (i=0; i<mbs; i++) a->nz += browlengths[i]; 30202593348eSBarry Smith 3021b6490206SBarry Smith /* read in nonzero values */ 302287828ca2SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 30230752156aSBarry Smith ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 302435aab85fSBarry Smith for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 3025b6490206SBarry Smith 3026b6490206SBarry Smith /* set "a" and "j" values into matrix */ 3027b6490206SBarry Smith nzcount = 0; jcount = 0; 3028b6490206SBarry Smith for (i=0; i<mbs; i++) { 3029b6490206SBarry Smith nzcountb = nzcount; 303035aab85fSBarry Smith nmask = 0; 3031b6490206SBarry Smith for (j=0; j<bs; j++) { 3032b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 3033b6490206SBarry Smith for (k=0; k<kmax; k++) { 303435aab85fSBarry Smith tmp = jj[nzcount++]/bs; 303535aab85fSBarry Smith if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 3036b6490206SBarry Smith } 3037b6490206SBarry Smith } 3038de6a44a3SBarry Smith /* sort the masked values */ 3039433994e6SBarry Smith ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 3040de6a44a3SBarry Smith 3041b6490206SBarry Smith /* set "j" values into matrix */ 3042b6490206SBarry Smith maskcount = 1; 304335aab85fSBarry Smith for (j=0; j<nmask; j++) { 304435aab85fSBarry Smith a->j[jcount++] = masked[j]; 3045de6a44a3SBarry Smith mask[masked[j]] = maskcount++; 3046b6490206SBarry Smith } 3047b6490206SBarry Smith /* set "a" values into matrix */ 3048de6a44a3SBarry Smith ishift = bs2*a->i[i]; 3049b6490206SBarry Smith for (j=0; j<bs; j++) { 3050b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 3051b6490206SBarry Smith for (k=0; k<kmax; k++) { 3052de6a44a3SBarry Smith tmp = jj[nzcountb]/bs ; 3053de6a44a3SBarry Smith block = mask[tmp] - 1; 3054de6a44a3SBarry Smith point = jj[nzcountb] - bs*tmp; 3055de6a44a3SBarry Smith idx = ishift + bs2*block + j + bs*point; 3056375fe846SBarry Smith a->a[idx] = (MatScalar)aa[nzcountb++]; 3057b6490206SBarry Smith } 3058b6490206SBarry Smith } 305935aab85fSBarry Smith /* zero out the mask elements we set */ 306035aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3061b6490206SBarry Smith } 306229bbc08cSBarry Smith if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 3063b6490206SBarry Smith 3064606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3065606d414cSSatish Balay ierr = PetscFree(browlengths);CHKERRQ(ierr); 3066606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 3067606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 3068606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 3069b6490206SBarry Smith 307078ae41b4SKris Buschelman ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 307178ae41b4SKris Buschelman ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 30729c01be13SBarry Smith ierr = MatView_Private(B);CHKERRQ(ierr); 307378ae41b4SKris Buschelman 307478ae41b4SKris Buschelman *A = B; 30753a40ed3dSBarry Smith PetscFunctionReturn(0); 30762593348eSBarry Smith } 30772593348eSBarry Smith 30784a2ae208SSatish Balay #undef __FUNCT__ 30794a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ" 3080273d9f13SBarry Smith /*@C 3081273d9f13SBarry Smith MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 3082273d9f13SBarry Smith compressed row) format. For good matrix assembly performance the 3083273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3084273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3085273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 30862593348eSBarry Smith 3087273d9f13SBarry Smith Collective on MPI_Comm 3088273d9f13SBarry Smith 3089273d9f13SBarry Smith Input Parameters: 3090273d9f13SBarry Smith + comm - MPI communicator, set to PETSC_COMM_SELF 3091273d9f13SBarry Smith . bs - size of block 3092273d9f13SBarry Smith . m - number of rows 3093273d9f13SBarry Smith . n - number of columns 309435d8aa7fSBarry Smith . nz - number of nonzero blocks per block row (same for all rows) 309535d8aa7fSBarry Smith - nnz - array containing the number of nonzero blocks in the various block rows 3096273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3097273d9f13SBarry Smith 3098273d9f13SBarry Smith Output Parameter: 3099273d9f13SBarry Smith . A - the matrix 3100273d9f13SBarry Smith 3101175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3102175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 3103175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 3104175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3105175b88e8SBarry Smith 3106273d9f13SBarry Smith Options Database Keys: 3107273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3108273d9f13SBarry Smith block calculations (much slower) 3109273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3110273d9f13SBarry Smith 3111273d9f13SBarry Smith Level: intermediate 3112273d9f13SBarry Smith 3113273d9f13SBarry Smith Notes: 3114d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 3115d1be2dadSMatthew Knepley 311649a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 311749a6f317SBarry Smith 311835d8aa7fSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 311935d8aa7fSBarry Smith 3120273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3121273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3122273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3123273d9f13SBarry Smith 3124273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3125273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3126273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3127273d9f13SBarry Smith matrices. 3128273d9f13SBarry Smith 3129273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ() 3130273d9f13SBarry Smith @*/ 3131be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 3132273d9f13SBarry Smith { 3133dfbe8321SBarry Smith PetscErrorCode ierr; 3134273d9f13SBarry Smith 3135273d9f13SBarry Smith PetscFunctionBegin; 3136f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3137f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 3138273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3139ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 3140273d9f13SBarry Smith PetscFunctionReturn(0); 3141273d9f13SBarry Smith } 3142273d9f13SBarry Smith 31434a2ae208SSatish Balay #undef __FUNCT__ 31444a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation" 3145273d9f13SBarry Smith /*@C 3146273d9f13SBarry Smith MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3147273d9f13SBarry Smith per row in the matrix. For good matrix assembly performance the 3148273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3149273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3150273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 3151273d9f13SBarry Smith 3152273d9f13SBarry Smith Collective on MPI_Comm 3153273d9f13SBarry Smith 3154273d9f13SBarry Smith Input Parameters: 3155273d9f13SBarry Smith + A - the matrix 3156273d9f13SBarry Smith . bs - size of block 3157273d9f13SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 3158273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows 3159273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3160273d9f13SBarry Smith 3161273d9f13SBarry Smith Options Database Keys: 3162273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3163273d9f13SBarry Smith block calculations (much slower) 3164273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3165273d9f13SBarry Smith 3166273d9f13SBarry Smith Level: intermediate 3167273d9f13SBarry Smith 3168273d9f13SBarry Smith Notes: 316949a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 317049a6f317SBarry Smith 3171aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3172aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3173aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3174aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3175aa95bbe8SBarry Smith 3176273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3177273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3178273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3179273d9f13SBarry Smith 3180273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3181273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3182273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3183273d9f13SBarry Smith matrices. 3184273d9f13SBarry Smith 3185aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo() 3186273d9f13SBarry Smith @*/ 3187be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 3188273d9f13SBarry Smith { 3189c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]); 3190273d9f13SBarry Smith 3191273d9f13SBarry Smith PetscFunctionBegin; 3192a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3193a23d5eceSKris Buschelman if (f) { 3194a23d5eceSKris Buschelman ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr); 3195273d9f13SBarry Smith } 3196273d9f13SBarry Smith PetscFunctionReturn(0); 3197273d9f13SBarry Smith } 3198a1d92eedSBarry Smith 3199c75a6043SHong Zhang #undef __FUNCT__ 3200725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR" 3201725b52f3SLisandro Dalcin /*@C 3202725b52f3SLisandro Dalcin MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format 3203725b52f3SLisandro Dalcin (the default sequential PETSc format). 3204725b52f3SLisandro Dalcin 3205725b52f3SLisandro Dalcin Collective on MPI_Comm 3206725b52f3SLisandro Dalcin 3207725b52f3SLisandro Dalcin Input Parameters: 3208725b52f3SLisandro Dalcin + A - the matrix 3209725b52f3SLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 3210725b52f3SLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 3211725b52f3SLisandro Dalcin - v - optional values in the matrix 3212725b52f3SLisandro Dalcin 3213725b52f3SLisandro Dalcin Level: developer 3214725b52f3SLisandro Dalcin 3215725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse 3216725b52f3SLisandro Dalcin 3217725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ 3218725b52f3SLisandro Dalcin @*/ 3219725b52f3SLisandro Dalcin PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3220725b52f3SLisandro Dalcin { 3221725b52f3SLisandro Dalcin PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 3222725b52f3SLisandro Dalcin 3223725b52f3SLisandro Dalcin PetscFunctionBegin; 3224725b52f3SLisandro Dalcin ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 3225725b52f3SLisandro Dalcin if (f) { 3226725b52f3SLisandro Dalcin ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 3227725b52f3SLisandro Dalcin } 3228725b52f3SLisandro Dalcin PetscFunctionReturn(0); 3229725b52f3SLisandro Dalcin } 3230725b52f3SLisandro Dalcin 3231725b52f3SLisandro Dalcin 3232725b52f3SLisandro Dalcin #undef __FUNCT__ 3233c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays" 3234c75a6043SHong Zhang /*@ 3235c75a6043SHong Zhang MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements 3236c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 3237c75a6043SHong Zhang 3238c75a6043SHong Zhang Collective on MPI_Comm 3239c75a6043SHong Zhang 3240c75a6043SHong Zhang Input Parameters: 3241c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 3242c75a6043SHong Zhang . bs - size of block 3243c75a6043SHong Zhang . m - number of rows 3244c75a6043SHong Zhang . n - number of columns 3245c75a6043SHong Zhang . i - row indices 3246c75a6043SHong Zhang . j - column indices 3247c75a6043SHong Zhang - a - matrix values 3248c75a6043SHong Zhang 3249c75a6043SHong Zhang Output Parameter: 3250c75a6043SHong Zhang . mat - the matrix 3251c75a6043SHong Zhang 3252c75a6043SHong Zhang Level: intermediate 3253c75a6043SHong Zhang 3254c75a6043SHong Zhang Notes: 3255c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 3256c75a6043SHong Zhang once the matrix is destroyed 3257c75a6043SHong Zhang 3258c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 3259c75a6043SHong Zhang 3260c75a6043SHong Zhang The i and j indices are 0 based 3261c75a6043SHong Zhang 3262c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ() 3263c75a6043SHong Zhang 3264c75a6043SHong Zhang @*/ 3265c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat) 3266c75a6043SHong Zhang { 3267c75a6043SHong Zhang PetscErrorCode ierr; 3268c75a6043SHong Zhang PetscInt ii; 3269c75a6043SHong Zhang Mat_SeqBAIJ *baij; 3270c75a6043SHong Zhang 3271c75a6043SHong Zhang PetscFunctionBegin; 3272c75a6043SHong Zhang if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 3273c75a6043SHong Zhang if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3274c75a6043SHong Zhang 3275c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3276c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 3277c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr); 3278c75a6043SHong Zhang ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 3279c75a6043SHong Zhang baij = (Mat_SeqBAIJ*)(*mat)->data; 3280c75a6043SHong Zhang ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr); 3281c75a6043SHong Zhang 3282c75a6043SHong Zhang baij->i = i; 3283c75a6043SHong Zhang baij->j = j; 3284c75a6043SHong Zhang baij->a = a; 3285c75a6043SHong Zhang baij->singlemalloc = PETSC_FALSE; 3286c75a6043SHong Zhang baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 3287e6b907acSBarry Smith baij->free_a = PETSC_FALSE; 3288e6b907acSBarry Smith baij->free_ij = PETSC_FALSE; 3289c75a6043SHong Zhang 3290c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 3291c75a6043SHong Zhang baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii]; 3292c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3293c75a6043SHong Zhang if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 3294c75a6043SHong Zhang #endif 3295c75a6043SHong Zhang } 3296c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3297c75a6043SHong Zhang for (ii=0; ii<baij->i[m]; ii++) { 3298c75a6043SHong Zhang if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 3299c75a6043SHong Zhang if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 3300c75a6043SHong Zhang } 3301c75a6043SHong Zhang #endif 3302c75a6043SHong Zhang 3303c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3304c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3305c75a6043SHong Zhang PetscFunctionReturn(0); 3306c75a6043SHong Zhang } 3307