xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 96854ed6ad2ded53123cd28a73515071866c9e4e)
12593348eSBarry Smith #ifndef lint
2*96854ed6SLois Curfman McInnes static char vcid[] = "$Id: baij.c,v 1.98 1997/04/10 00:03:26 bsmith Exp curfman $";
32593348eSBarry Smith #endif
42593348eSBarry Smith 
52593348eSBarry Smith /*
6b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
72593348eSBarry Smith   matrix storage format.
82593348eSBarry Smith */
93369ce9aSBarry Smith 
103369ce9aSBarry Smith #include "pinclude/pviewer.h"
113369ce9aSBarry Smith #include "sys.h"
1270f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h"
131a6a6d98SBarry Smith #include "src/vec/vecimpl.h"
141a6a6d98SBarry Smith #include "src/inline/spops.h"
152593348eSBarry Smith #include "petsc.h"
163b547af2SSatish Balay 
172593348eSBarry Smith 
18de6a44a3SBarry Smith /*
19de6a44a3SBarry Smith      Adds diagonal pointers to sparse matrix structure.
20de6a44a3SBarry Smith */
21de6a44a3SBarry Smith 
225615d1e5SSatish Balay #undef __FUNC__
235615d1e5SSatish Balay #define __FUNC__ "MatMarkDiag_SeqBAIJ"
24de6a44a3SBarry Smith int MatMarkDiag_SeqBAIJ(Mat A)
25de6a44a3SBarry Smith {
26de6a44a3SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
277fc0212eSBarry Smith   int         i,j, *diag, m = a->mbs;
28de6a44a3SBarry Smith 
29de6a44a3SBarry Smith   diag = (int *) PetscMalloc( (m+1)*sizeof(int)); CHKPTRQ(diag);
30de6a44a3SBarry Smith   PLogObjectMemory(A,(m+1)*sizeof(int));
317fc0212eSBarry Smith   for ( i=0; i<m; i++ ) {
32de6a44a3SBarry Smith     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
33de6a44a3SBarry Smith       if (a->j[j] == i) {
34de6a44a3SBarry Smith         diag[i] = j;
35de6a44a3SBarry Smith         break;
36de6a44a3SBarry Smith       }
37de6a44a3SBarry Smith     }
38de6a44a3SBarry Smith   }
39de6a44a3SBarry Smith   a->diag = diag;
40de6a44a3SBarry Smith   return 0;
41de6a44a3SBarry Smith }
422593348eSBarry Smith 
432593348eSBarry Smith 
443b2fbd54SBarry Smith extern int MatToSymmetricIJ_SeqAIJ(int,int*,int*,int,int,int**,int**);
453b2fbd54SBarry Smith 
465615d1e5SSatish Balay #undef __FUNC__
475615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_SeqBAIJ"
483b2fbd54SBarry Smith static int MatGetRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
493b2fbd54SBarry Smith                             PetscTruth *done)
503b2fbd54SBarry Smith {
513b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
523b2fbd54SBarry Smith   int         ierr, n = a->mbs,i;
533b2fbd54SBarry Smith 
543b2fbd54SBarry Smith   *nn = n;
553b2fbd54SBarry Smith   if (!ia) return 0;
563b2fbd54SBarry Smith   if (symmetric) {
573b2fbd54SBarry Smith     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,oshift,ia,ja);CHKERRQ(ierr);
583b2fbd54SBarry Smith   } else if (oshift == 1) {
593b2fbd54SBarry Smith     /* temporarily add 1 to i and j indices */
603b2fbd54SBarry Smith     int nz = a->i[n] + 1;
613b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]++;
623b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]++;
633b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
643b2fbd54SBarry Smith   } else {
653b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
663b2fbd54SBarry Smith   }
673b2fbd54SBarry Smith 
683b2fbd54SBarry Smith   return 0;
693b2fbd54SBarry Smith }
703b2fbd54SBarry Smith 
715615d1e5SSatish Balay #undef __FUNC__
725eea60f9SBarry Smith #define __FUNC__ "MatRestoreRowIJ_SeqBAIJ" /* ADIC Ignore */
733b2fbd54SBarry Smith static int MatRestoreRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
743b2fbd54SBarry Smith                                 PetscTruth *done)
753b2fbd54SBarry Smith {
763b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
773b2fbd54SBarry Smith   int         i,n = a->mbs;
783b2fbd54SBarry Smith 
793b2fbd54SBarry Smith   if (!ia) return 0;
803b2fbd54SBarry Smith   if (symmetric) {
813b2fbd54SBarry Smith     PetscFree(*ia);
823b2fbd54SBarry Smith     PetscFree(*ja);
83af5da2bfSBarry Smith   } else if (oshift == 1) {
843b2fbd54SBarry Smith     int nz = a->i[n];
853b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]--;
863b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]--;
873b2fbd54SBarry Smith   }
883b2fbd54SBarry Smith   return 0;
893b2fbd54SBarry Smith }
903b2fbd54SBarry Smith 
913b2fbd54SBarry Smith 
925615d1e5SSatish Balay #undef __FUNC__
935eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Binary" /* ADIC Ignore */
94b6490206SBarry Smith static int MatView_SeqBAIJ_Binary(Mat A,Viewer viewer)
952593348eSBarry Smith {
96b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
979df24120SSatish Balay   int         i, fd, *col_lens, ierr, bs = a->bs,count,*jj,j,k,l,bs2=a->bs2;
98b6490206SBarry Smith   Scalar      *aa;
992593348eSBarry Smith 
10090ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
1012593348eSBarry Smith   col_lens = (int *) PetscMalloc((4+a->m)*sizeof(int));CHKPTRQ(col_lens);
1022593348eSBarry Smith   col_lens[0] = MAT_COOKIE;
1033b2fbd54SBarry Smith 
1042593348eSBarry Smith   col_lens[1] = a->m;
1052593348eSBarry Smith   col_lens[2] = a->n;
1067e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
1072593348eSBarry Smith 
1082593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
109b6490206SBarry Smith   count = 0;
110b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
111b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
112b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
113b6490206SBarry Smith     }
1142593348eSBarry Smith   }
11577c4ece6SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+a->m,BINARY_INT,1); CHKERRQ(ierr);
1162593348eSBarry Smith   PetscFree(col_lens);
1172593348eSBarry Smith 
1182593348eSBarry Smith   /* store column indices (zero start index) */
11966963ce1SSatish Balay   jj = (int *) PetscMalloc( (a->nz+1)*bs2*sizeof(int) ); CHKPTRQ(jj);
120b6490206SBarry Smith   count = 0;
121b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
122b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
123b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
124b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
125b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
1262593348eSBarry Smith         }
1272593348eSBarry Smith       }
128b6490206SBarry Smith     }
129b6490206SBarry Smith   }
1307e67e3f9SSatish Balay   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,BINARY_INT,0); CHKERRQ(ierr);
131b6490206SBarry Smith   PetscFree(jj);
1322593348eSBarry Smith 
1332593348eSBarry Smith   /* store nonzero values */
13466963ce1SSatish Balay   aa = (Scalar *) PetscMalloc((a->nz+1)*bs2*sizeof(Scalar)); CHKPTRQ(aa);
135b6490206SBarry Smith   count = 0;
136b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
137b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
138b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
139b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
1407e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
141b6490206SBarry Smith         }
142b6490206SBarry Smith       }
143b6490206SBarry Smith     }
144b6490206SBarry Smith   }
1457e67e3f9SSatish Balay   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,BINARY_SCALAR,0); CHKERRQ(ierr);
146b6490206SBarry Smith   PetscFree(aa);
1472593348eSBarry Smith   return 0;
1482593348eSBarry Smith }
1492593348eSBarry Smith 
1505615d1e5SSatish Balay #undef __FUNC__
1515eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_ASCII" /* ADIC Ignore */
152b6490206SBarry Smith static int MatView_SeqBAIJ_ASCII(Mat A,Viewer viewer)
1532593348eSBarry Smith {
154b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
1559df24120SSatish Balay   int         ierr, i,j,format,bs = a->bs,k,l,bs2=a->bs2;
1562593348eSBarry Smith   FILE        *fd;
1572593348eSBarry Smith   char        *outputname;
1582593348eSBarry Smith 
15990ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
1602593348eSBarry Smith   ierr = ViewerFileGetOutputname_Private(viewer,&outputname);CHKERRQ(ierr);
16190ace30eSBarry Smith   ierr = ViewerGetFormat(viewer,&format);
162639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO || format == VIEWER_FORMAT_ASCII_INFO_LONG) {
1637ddc982cSLois Curfman McInnes     fprintf(fd,"  block size is %d\n",bs);
1642593348eSBarry Smith   }
165639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_MATLAB) {
166e3372554SBarry Smith     SETERRQ(1,0,"Matlab format not supported");
1672593348eSBarry Smith   }
168639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_COMMON) {
16944cd7ae7SLois Curfman McInnes     for ( i=0; i<a->mbs; i++ ) {
17044cd7ae7SLois Curfman McInnes       for ( j=0; j<bs; j++ ) {
17144cd7ae7SLois Curfman McInnes         fprintf(fd,"row %d:",i*bs+j);
17244cd7ae7SLois Curfman McInnes         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
17344cd7ae7SLois Curfman McInnes           for ( l=0; l<bs; l++ ) {
17444cd7ae7SLois Curfman McInnes #if defined(PETSC_COMPLEX)
17544cd7ae7SLois Curfman McInnes           if (imag(a->a[bs2*k + l*bs + j]) != 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0)
17644cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
17744cd7ae7SLois Curfman McInnes               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
17844cd7ae7SLois Curfman McInnes           else if (real(a->a[bs2*k + l*bs + j]) != 0.0)
17944cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
18044cd7ae7SLois Curfman McInnes #else
18144cd7ae7SLois Curfman McInnes           if (a->a[bs2*k + l*bs + j] != 0.0)
18244cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
18344cd7ae7SLois Curfman McInnes #endif
18444cd7ae7SLois Curfman McInnes           }
18544cd7ae7SLois Curfman McInnes         }
18644cd7ae7SLois Curfman McInnes         fprintf(fd,"\n");
18744cd7ae7SLois Curfman McInnes       }
18844cd7ae7SLois Curfman McInnes     }
18944cd7ae7SLois Curfman McInnes   }
1902593348eSBarry Smith   else {
191b6490206SBarry Smith     for ( i=0; i<a->mbs; i++ ) {
192b6490206SBarry Smith       for ( j=0; j<bs; j++ ) {
193b6490206SBarry Smith         fprintf(fd,"row %d:",i*bs+j);
194b6490206SBarry Smith         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
195b6490206SBarry Smith           for ( l=0; l<bs; l++ ) {
19688685aaeSLois Curfman McInnes #if defined(PETSC_COMPLEX)
1977e67e3f9SSatish Balay           if (imag(a->a[bs2*k + l*bs + j]) != 0.0) {
19888685aaeSLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
1997e67e3f9SSatish Balay               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
20088685aaeSLois Curfman McInnes           }
20188685aaeSLois Curfman McInnes           else {
2027e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
20388685aaeSLois Curfman McInnes           }
20488685aaeSLois Curfman McInnes #else
2057e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
20688685aaeSLois Curfman McInnes #endif
2072593348eSBarry Smith           }
2082593348eSBarry Smith         }
2092593348eSBarry Smith         fprintf(fd,"\n");
2102593348eSBarry Smith       }
2112593348eSBarry Smith     }
212b6490206SBarry Smith   }
2132593348eSBarry Smith   fflush(fd);
2142593348eSBarry Smith   return 0;
2152593348eSBarry Smith }
2162593348eSBarry Smith 
2175615d1e5SSatish Balay #undef __FUNC__
2185eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Draw" /* ADIC Ignore */
2193270192aSSatish Balay static int MatView_SeqBAIJ_Draw(Mat A,Viewer viewer)
2203270192aSSatish Balay {
2213270192aSSatish Balay   Mat_SeqBAIJ  *a=(Mat_SeqBAIJ *) A->data;
2223270192aSSatish Balay   int          row,ierr,i,j,k,l,mbs=a->mbs,pause,color,bs=a->bs,bs2=a->bs2;
2233270192aSSatish Balay   double       xl,yl,xr,yr,w,h,xc,yc,scale = 1.0,x_l,x_r,y_l,y_r;
2243270192aSSatish Balay   Scalar       *aa;
2253270192aSSatish Balay   Draw         draw;
2263270192aSSatish Balay   DrawButton   button;
2273270192aSSatish Balay   PetscTruth   isnull;
2283270192aSSatish Balay 
2293270192aSSatish Balay   ViewerDrawGetDraw(viewer,&draw);
2303270192aSSatish Balay   ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0;
2313270192aSSatish Balay 
2323270192aSSatish Balay   xr  = a->n; yr = a->m; h = yr/10.0; w = xr/10.0;
2333270192aSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
2343270192aSSatish Balay   ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
2353270192aSSatish Balay   /* loop over matrix elements drawing boxes */
2363270192aSSatish Balay   color = DRAW_BLUE;
2373270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2383270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2393270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2403270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2413270192aSSatish Balay       aa = a->a + j*bs2;
2423270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2433270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2443270192aSSatish Balay           if (PetscReal(*aa++) >=  0.) continue;
245b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2463270192aSSatish Balay         }
2473270192aSSatish Balay       }
2483270192aSSatish Balay     }
2493270192aSSatish Balay   }
2503270192aSSatish Balay   color = DRAW_CYAN;
2513270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2523270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2533270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2543270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2553270192aSSatish Balay       aa = a->a + j*bs2;
2563270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2573270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2583270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
259b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2603270192aSSatish Balay         }
2613270192aSSatish Balay       }
2623270192aSSatish Balay     }
2633270192aSSatish Balay   }
2643270192aSSatish Balay 
2653270192aSSatish Balay   color = DRAW_RED;
2663270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2673270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2683270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2693270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2703270192aSSatish Balay       aa = a->a + j*bs2;
2713270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2723270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2733270192aSSatish Balay           if (PetscReal(*aa++) <= 0.) continue;
274b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2753270192aSSatish Balay         }
2763270192aSSatish Balay       }
2773270192aSSatish Balay     }
2783270192aSSatish Balay   }
2793270192aSSatish Balay 
2803270192aSSatish Balay   DrawFlush(draw);
2813270192aSSatish Balay   DrawGetPause(draw,&pause);
2823270192aSSatish Balay   if (pause >= 0) { PetscSleep(pause); return 0;}
2833270192aSSatish Balay 
2843270192aSSatish Balay   /* allow the matrix to zoom or shrink */
2853270192aSSatish Balay   ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
2863270192aSSatish Balay   while (button != BUTTON_RIGHT) {
2873270192aSSatish Balay     DrawClear(draw);
2883270192aSSatish Balay     if (button == BUTTON_LEFT) scale = .5;
2893270192aSSatish Balay     else if (button == BUTTON_CENTER) scale = 2.;
2903270192aSSatish Balay     xl = scale*(xl + w - xc) + xc - w*scale;
2913270192aSSatish Balay     xr = scale*(xr - w - xc) + xc + w*scale;
2923270192aSSatish Balay     yl = scale*(yl + h - yc) + yc - h*scale;
2933270192aSSatish Balay     yr = scale*(yr - h - yc) + yc + h*scale;
2943270192aSSatish Balay     w *= scale; h *= scale;
2953270192aSSatish Balay     ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
2963270192aSSatish Balay     color = DRAW_BLUE;
2973270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2983270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2993270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3003270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3013270192aSSatish Balay         aa = a->a + j*bs2;
3023270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3033270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3043270192aSSatish Balay             if (PetscReal(*aa++) >=  0.) continue;
305b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3063270192aSSatish Balay           }
3073270192aSSatish Balay         }
3083270192aSSatish Balay       }
3093270192aSSatish Balay     }
3103270192aSSatish Balay     color = DRAW_CYAN;
3113270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3123270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3133270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3143270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3153270192aSSatish Balay         aa = a->a + j*bs2;
3163270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3173270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3183270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
319b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3203270192aSSatish Balay           }
3213270192aSSatish Balay         }
3223270192aSSatish Balay       }
3233270192aSSatish Balay     }
3243270192aSSatish Balay 
3253270192aSSatish Balay     color = DRAW_RED;
3263270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3273270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3283270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3293270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3303270192aSSatish Balay         aa = a->a + j*bs2;
3313270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3323270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3333270192aSSatish Balay             if (PetscReal(*aa++) <= 0.) continue;
334b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3353270192aSSatish Balay           }
3363270192aSSatish Balay         }
3373270192aSSatish Balay       }
3383270192aSSatish Balay     }
3393270192aSSatish Balay     ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
3403270192aSSatish Balay   }
3413270192aSSatish Balay   return 0;
3423270192aSSatish Balay }
3433270192aSSatish Balay 
3445615d1e5SSatish Balay #undef __FUNC__
3455eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ" /* ADIC Ignore */
3468f6be9afSLois Curfman McInnes int MatView_SeqBAIJ(PetscObject obj,Viewer viewer)
3472593348eSBarry Smith {
3482593348eSBarry Smith   Mat         A = (Mat) obj;
34919bcc07fSBarry Smith   ViewerType  vtype;
35019bcc07fSBarry Smith   int         ierr;
3512593348eSBarry Smith 
35219bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
35319bcc07fSBarry Smith   if (vtype == MATLAB_VIEWER) {
354e3372554SBarry Smith     SETERRQ(1,0,"Matlab viewer not supported");
3552593348eSBarry Smith   }
35619bcc07fSBarry Smith   else if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER){
357b6490206SBarry Smith     return MatView_SeqBAIJ_ASCII(A,viewer);
3582593348eSBarry Smith   }
35919bcc07fSBarry Smith   else if (vtype == BINARY_FILE_VIEWER) {
360b6490206SBarry Smith     return MatView_SeqBAIJ_Binary(A,viewer);
3612593348eSBarry Smith   }
36219bcc07fSBarry Smith   else if (vtype == DRAW_VIEWER) {
3633270192aSSatish Balay     return MatView_SeqBAIJ_Draw(A,viewer);
3642593348eSBarry Smith   }
3652593348eSBarry Smith   return 0;
3662593348eSBarry Smith }
367b6490206SBarry Smith 
368119a934aSSatish Balay #define CHUNKSIZE  10
369cd0e1443SSatish Balay 
3705615d1e5SSatish Balay #undef __FUNC__
3715615d1e5SSatish Balay #define __FUNC__ "MatSetValues_SeqBAIJ"
372639f9d9dSBarry Smith int MatSetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
373cd0e1443SSatish Balay {
374cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
375cd0e1443SSatish Balay   int         *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
376cd0e1443SSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
377a7c10996SSatish Balay   int         *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol;
3789df24120SSatish Balay   int          ridx,cidx,bs2=a->bs2;
379cd0e1443SSatish Balay   Scalar      *ap,value,*aa=a->a,*bap;
380cd0e1443SSatish Balay 
381cd0e1443SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over added rows */
382cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
3833b2fbd54SBarry Smith #if defined(PETSC_BOPT_g)
384e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
385e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
3863b2fbd54SBarry Smith #endif
3872c3acbe9SBarry Smith     rp   = aj + ai[brow];
3882c3acbe9SBarry Smith     ap   = aa + bs2*ai[brow];
3892c3acbe9SBarry Smith     rmax = imax[brow];
3902c3acbe9SBarry Smith     nrow = ailen[brow];
391cd0e1443SSatish Balay     low  = 0;
392cd0e1443SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over added columns */
3933b2fbd54SBarry Smith #if defined(PETSC_BOPT_g)
394e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
395e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
3963b2fbd54SBarry Smith #endif
397a7c10996SSatish Balay       col = in[l]; bcol = col/bs;
398cd0e1443SSatish Balay       ridx = row % bs; cidx = col % bs;
399cd0e1443SSatish Balay       if (roworiented) {
400cd0e1443SSatish Balay         value = *v++;
401cd0e1443SSatish Balay       }
402cd0e1443SSatish Balay       else {
403cd0e1443SSatish Balay         value = v[k + l*m];
404cd0e1443SSatish Balay       }
405cd0e1443SSatish Balay       if (!sorted) low = 0; high = nrow;
4062c3acbe9SBarry Smith       while (high-low > 7) {
407cd0e1443SSatish Balay         t = (low+high)/2;
408cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
409cd0e1443SSatish Balay         else              low  = t;
410cd0e1443SSatish Balay       }
411cd0e1443SSatish Balay       for ( i=low; i<high; i++ ) {
412cd0e1443SSatish Balay         if (rp[i] > bcol) break;
413cd0e1443SSatish Balay         if (rp[i] == bcol) {
4147e67e3f9SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
415cd0e1443SSatish Balay           if (is == ADD_VALUES) *bap += value;
416cd0e1443SSatish Balay           else                  *bap  = value;
417f1241b54SBarry Smith           goto noinsert1;
418cd0e1443SSatish Balay         }
419cd0e1443SSatish Balay       }
420c2653b3dSLois Curfman McInnes       if (nonew == 1) goto noinsert1;
421c2653b3dSLois Curfman McInnes       else if (nonew == -1) SETERRQ(1,1,"Inserting a new nonzero in the matrix");
422cd0e1443SSatish Balay       if (nrow >= rmax) {
423cd0e1443SSatish Balay         /* there is no extra room in row, therefore enlarge */
424cd0e1443SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
425cd0e1443SSatish Balay         Scalar *new_a;
426cd0e1443SSatish Balay 
427*96854ed6SLois Curfman McInnes         if (nonew == -2) SETERRQ(1,1,"Inserting a new nonzero in the matrix");
428*96854ed6SLois Curfman McInnes 
429*96854ed6SLois Curfman McInnes         /* Malloc new storage space */
4307e67e3f9SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
431cd0e1443SSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
4327e67e3f9SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz);
433cd0e1443SSatish Balay         new_i   = new_j + new_nz;
434cd0e1443SSatish Balay 
435cd0e1443SSatish Balay         /* copy over old data into new slots */
436cd0e1443SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];}
4377e67e3f9SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
438a7c10996SSatish Balay         PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));
439a7c10996SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow);
440a7c10996SSatish Balay         PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,
441cd0e1443SSatish Balay                                                            len*sizeof(int));
442a7c10996SSatish Balay         PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));
443a7c10996SSatish Balay         PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
444a7c10996SSatish Balay         PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),
445a7c10996SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));
446cd0e1443SSatish Balay         /* free up old matrix storage */
447cd0e1443SSatish Balay         PetscFree(a->a);
448cd0e1443SSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
449cd0e1443SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
450cd0e1443SSatish Balay         a->singlemalloc = 1;
451cd0e1443SSatish Balay 
452a7c10996SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
453cd0e1443SSatish Balay         rmax = imax[brow] = imax[brow] + CHUNKSIZE;
4547e67e3f9SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
45518e7b8e4SLois Curfman McInnes         a->maxnz += bs2*CHUNKSIZE;
456cd0e1443SSatish Balay         a->reallocs++;
457119a934aSSatish Balay         a->nz++;
458cd0e1443SSatish Balay       }
4597e67e3f9SSatish Balay       N = nrow++ - 1;
460cd0e1443SSatish Balay       /* shift up all the later entries in this row */
461cd0e1443SSatish Balay       for ( ii=N; ii>=i; ii-- ) {
462cd0e1443SSatish Balay         rp[ii+1] = rp[ii];
4637e67e3f9SSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
464cd0e1443SSatish Balay       }
4657e67e3f9SSatish Balay       if (N>=i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
466cd0e1443SSatish Balay       rp[i]                      = bcol;
4677e67e3f9SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
468f1241b54SBarry Smith       noinsert1:;
469cd0e1443SSatish Balay       low = i;
470cd0e1443SSatish Balay     }
471cd0e1443SSatish Balay     ailen[brow] = nrow;
472cd0e1443SSatish Balay   }
473cd0e1443SSatish Balay   return 0;
474cd0e1443SSatish Balay }
475cd0e1443SSatish Balay 
4765615d1e5SSatish Balay #undef __FUNC__
47792c4ed94SBarry Smith #define __FUNC__ "MatSetValues_SeqBAIJ"
47892c4ed94SBarry Smith int MatSetValuesBlocked_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
47992c4ed94SBarry Smith {
48092c4ed94SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
4818a84c255SSatish Balay   int         *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
4820e324ae4SSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen;
4830e324ae4SSatish Balay   int         roworiented=a->roworiented;
4848a84c255SSatish Balay   int         *aj=a->j,nonew=a->nonew;
4850e324ae4SSatish Balay   int          bs2=a->bs2,bs=a->bs,stepval;
4860e324ae4SSatish Balay   Scalar      *ap,*value=v,*aa=a->a,*bap;
48792c4ed94SBarry Smith 
4880e324ae4SSatish Balay   if (roworiented) {
4890e324ae4SSatish Balay     stepval = (n-1)*bs;
4900e324ae4SSatish Balay   } else {
4910e324ae4SSatish Balay     stepval = (m-1)*bs;
4920e324ae4SSatish Balay   }
49392c4ed94SBarry Smith   for ( k=0; k<m; k++ ) { /* loop over added rows */
49492c4ed94SBarry Smith     row  = im[k];
49592c4ed94SBarry Smith #if defined(PETSC_BOPT_g)
49692c4ed94SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
4978a84c255SSatish Balay     if (row >= a->mbs) SETERRQ(1,0,"Row too large");
49892c4ed94SBarry Smith #endif
49992c4ed94SBarry Smith     rp   = aj + ai[row];
50092c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
50192c4ed94SBarry Smith     rmax = imax[row];
50292c4ed94SBarry Smith     nrow = ailen[row];
50392c4ed94SBarry Smith     low  = 0;
50492c4ed94SBarry Smith     for ( l=0; l<n; l++ ) { /* loop over added columns */
50592c4ed94SBarry Smith #if defined(PETSC_BOPT_g)
50692c4ed94SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
5078a84c255SSatish Balay       if (in[l] >= a->nbs) SETERRQ(1,0,"Column too large");
50892c4ed94SBarry Smith #endif
50992c4ed94SBarry Smith       col = in[l];
51092c4ed94SBarry Smith       if (roworiented) {
5110e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
5120e324ae4SSatish Balay       } else {
5130e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
51492c4ed94SBarry Smith       }
51592c4ed94SBarry Smith       if (!sorted) low = 0; high = nrow;
51692c4ed94SBarry Smith       while (high-low > 7) {
51792c4ed94SBarry Smith         t = (low+high)/2;
51892c4ed94SBarry Smith         if (rp[t] > col) high = t;
51992c4ed94SBarry Smith         else             low  = t;
52092c4ed94SBarry Smith       }
52192c4ed94SBarry Smith       for ( i=low; i<high; i++ ) {
52292c4ed94SBarry Smith         if (rp[i] > col) break;
52392c4ed94SBarry Smith         if (rp[i] == col) {
5248a84c255SSatish Balay           bap  = ap +  bs2*i;
5250e324ae4SSatish Balay           if (roworiented) {
5268a84c255SSatish Balay             if (is == ADD_VALUES) {
5270e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5288a84c255SSatish Balay                 for (jj=ii; jj<bs2; jj+=bs )
5298a84c255SSatish Balay                   bap[jj] += *value++;
5300e324ae4SSatish Balay             } else {
5310e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5320e324ae4SSatish Balay                 for (jj=ii; jj<bs2; jj+=bs )
5330e324ae4SSatish Balay                   bap[jj] = *value++;
5348a84c255SSatish Balay             }
5350e324ae4SSatish Balay           } else {
5360e324ae4SSatish Balay             if (is == ADD_VALUES) {
5370e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5380e324ae4SSatish Balay                 for (jj=0; jj<bs; jj++ )
5390e324ae4SSatish Balay                   *bap++ += *value++;
5400e324ae4SSatish Balay             } else {
5410e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5420e324ae4SSatish Balay                 for (jj=0; jj<bs; jj++ )
5430e324ae4SSatish Balay                   *bap++  = *value++;
5440e324ae4SSatish Balay             }
5458a84c255SSatish Balay           }
546f1241b54SBarry Smith           goto noinsert2;
54792c4ed94SBarry Smith         }
54892c4ed94SBarry Smith       }
549f1241b54SBarry Smith       if (nonew) goto noinsert2;
55092c4ed94SBarry Smith       if (nrow >= rmax) {
55192c4ed94SBarry Smith         /* there is no extra room in row, therefore enlarge */
55292c4ed94SBarry Smith         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
55392c4ed94SBarry Smith         Scalar *new_a;
55492c4ed94SBarry Smith 
55592c4ed94SBarry Smith         /* malloc new storage space */
55692c4ed94SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
55792c4ed94SBarry Smith         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
55892c4ed94SBarry Smith         new_j   = (int *) (new_a + bs2*new_nz);
55992c4ed94SBarry Smith         new_i   = new_j + new_nz;
56092c4ed94SBarry Smith 
56192c4ed94SBarry Smith         /* copy over old data into new slots */
56292c4ed94SBarry Smith         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];}
56392c4ed94SBarry Smith         for ( ii=row+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
56492c4ed94SBarry Smith         PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int));
56592c4ed94SBarry Smith         len = (new_nz - CHUNKSIZE - ai[row] - nrow);
56692c4ed94SBarry Smith         PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,
56792c4ed94SBarry Smith                                                            len*sizeof(int));
56892c4ed94SBarry Smith         PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(Scalar));
56992c4ed94SBarry Smith         PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
57092c4ed94SBarry Smith         PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),
57192c4ed94SBarry Smith                     aa+bs2*(ai[row]+nrow),bs2*len*sizeof(Scalar));
57292c4ed94SBarry Smith         /* free up old matrix storage */
57392c4ed94SBarry Smith         PetscFree(a->a);
57492c4ed94SBarry Smith         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
57592c4ed94SBarry Smith         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
57692c4ed94SBarry Smith         a->singlemalloc = 1;
57792c4ed94SBarry Smith 
57892c4ed94SBarry Smith         rp   = aj + ai[row]; ap = aa + bs2*ai[row];
57992c4ed94SBarry Smith         rmax = imax[row] = imax[row] + CHUNKSIZE;
58092c4ed94SBarry Smith         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
58192c4ed94SBarry Smith         a->maxnz += bs2*CHUNKSIZE;
58292c4ed94SBarry Smith         a->reallocs++;
58392c4ed94SBarry Smith         a->nz++;
58492c4ed94SBarry Smith       }
58592c4ed94SBarry Smith       N = nrow++ - 1;
58692c4ed94SBarry Smith       /* shift up all the later entries in this row */
58792c4ed94SBarry Smith       for ( ii=N; ii>=i; ii-- ) {
58892c4ed94SBarry Smith         rp[ii+1] = rp[ii];
58992c4ed94SBarry Smith         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
59092c4ed94SBarry Smith       }
59192c4ed94SBarry Smith       if (N >= i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
59292c4ed94SBarry Smith       rp[i] = col;
5938a84c255SSatish Balay       bap   = ap +  bs2*i;
5940e324ae4SSatish Balay       if (roworiented) {
5950e324ae4SSatish Balay         for ( ii=0; ii<bs; ii++,value+=stepval)
5968a84c255SSatish Balay           for (jj=ii; jj<bs2; jj+=bs )
5970e324ae4SSatish Balay             bap[jj] = *value++;
5980e324ae4SSatish Balay       } else {
5990e324ae4SSatish Balay         for ( ii=0; ii<bs; ii++,value+=stepval )
6000e324ae4SSatish Balay           for (jj=0; jj<bs; jj++ )
6010e324ae4SSatish Balay             *bap++  = *value++;
6020e324ae4SSatish Balay       }
603f1241b54SBarry Smith       noinsert2:;
60492c4ed94SBarry Smith       low = i;
60592c4ed94SBarry Smith     }
60692c4ed94SBarry Smith     ailen[row] = nrow;
60792c4ed94SBarry Smith   }
60892c4ed94SBarry Smith   return 0;
60992c4ed94SBarry Smith }
61092c4ed94SBarry Smith 
61192c4ed94SBarry Smith #undef __FUNC__
6125eea60f9SBarry Smith #define __FUNC__ "MatGetSize_SeqBAIJ" /* ADIC Ignore */
6138f6be9afSLois Curfman McInnes int MatGetSize_SeqBAIJ(Mat A,int *m,int *n)
6140b824a48SSatish Balay {
6150b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6160b824a48SSatish Balay   *m = a->m; *n = a->n;
6170b824a48SSatish Balay   return 0;
6180b824a48SSatish Balay }
6190b824a48SSatish Balay 
6205615d1e5SSatish Balay #undef __FUNC__
6215eea60f9SBarry Smith #define __FUNC__ "MatGetOwnershipRange_SeqBAIJ" /* ADIC Ignore */
6228f6be9afSLois Curfman McInnes int MatGetOwnershipRange_SeqBAIJ(Mat A,int *m,int *n)
6230b824a48SSatish Balay {
6240b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6250b824a48SSatish Balay   *m = 0; *n = a->m;
6260b824a48SSatish Balay   return 0;
6270b824a48SSatish Balay }
6280b824a48SSatish Balay 
6295615d1e5SSatish Balay #undef __FUNC__
6305615d1e5SSatish Balay #define __FUNC__ "MatGetRow_SeqBAIJ"
6319867e207SSatish Balay int MatGetRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
6329867e207SSatish Balay {
6339867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6347e67e3f9SSatish Balay   int          itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
6359867e207SSatish Balay   Scalar      *aa,*v_i,*aa_i;
6369867e207SSatish Balay 
6379867e207SSatish Balay   bs  = a->bs;
6389867e207SSatish Balay   ai  = a->i;
6399867e207SSatish Balay   aj  = a->j;
6409867e207SSatish Balay   aa  = a->a;
6419df24120SSatish Balay   bs2 = a->bs2;
6429867e207SSatish Balay 
643e3372554SBarry Smith   if (row < 0 || row >= a->m) SETERRQ(1,0,"Row out of range");
6449867e207SSatish Balay 
6459867e207SSatish Balay   bn  = row/bs;   /* Block number */
6469867e207SSatish Balay   bp  = row % bs; /* Block Position */
6479867e207SSatish Balay   M   = ai[bn+1] - ai[bn];
6489867e207SSatish Balay   *nz = bs*M;
6499867e207SSatish Balay 
6509867e207SSatish Balay   if (v) {
6519867e207SSatish Balay     *v = 0;
6529867e207SSatish Balay     if (*nz) {
6539867e207SSatish Balay       *v = (Scalar *) PetscMalloc( (*nz)*sizeof(Scalar) ); CHKPTRQ(*v);
6549867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6559867e207SSatish Balay         v_i  = *v + i*bs;
6567e67e3f9SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
6577e67e3f9SSatish Balay         for ( j=bp,k=0; j<bs2; j+=bs,k++ ) {v_i[k] = aa_i[j];}
6589867e207SSatish Balay       }
6599867e207SSatish Balay     }
6609867e207SSatish Balay   }
6619867e207SSatish Balay 
6629867e207SSatish Balay   if (idx) {
6639867e207SSatish Balay     *idx = 0;
6649867e207SSatish Balay     if (*nz) {
6659867e207SSatish Balay       *idx = (int *) PetscMalloc( (*nz)*sizeof(int) ); CHKPTRQ(*idx);
6669867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6679867e207SSatish Balay         idx_i = *idx + i*bs;
6689867e207SSatish Balay         itmp  = bs*aj[ai[bn] + i];
6699867e207SSatish Balay         for ( j=0; j<bs; j++ ) {idx_i[j] = itmp++;}
6709867e207SSatish Balay       }
6719867e207SSatish Balay     }
6729867e207SSatish Balay   }
6739867e207SSatish Balay   return 0;
6749867e207SSatish Balay }
6759867e207SSatish Balay 
6765615d1e5SSatish Balay #undef __FUNC__
6775eea60f9SBarry Smith #define __FUNC__ "MatRestoreRow_SeqBAIJ" /* ADIC Ignore */
6789867e207SSatish Balay int MatRestoreRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
6799867e207SSatish Balay {
6809867e207SSatish Balay   if (idx) {if (*idx) PetscFree(*idx);}
6819867e207SSatish Balay   if (v)   {if (*v)   PetscFree(*v);}
6829867e207SSatish Balay   return 0;
6839867e207SSatish Balay }
684b6490206SBarry Smith 
6855615d1e5SSatish Balay #undef __FUNC__
6865615d1e5SSatish Balay #define __FUNC__ "MatTranspose_SeqBAIJ"
6878f6be9afSLois Curfman McInnes int MatTranspose_SeqBAIJ(Mat A,Mat *B)
688f2501298SSatish Balay {
689f2501298SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data;
690f2501298SSatish Balay   Mat         C;
691f2501298SSatish Balay   int         i,j,k,ierr,*aj=a->j,*ai=a->i,bs=a->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
6929df24120SSatish Balay   int         *rows,*cols,bs2=a->bs2;
693f2501298SSatish Balay   Scalar      *array=a->a;
694f2501298SSatish Balay 
695f2501298SSatish Balay   if (B==PETSC_NULL && mbs!=nbs)
696e3372554SBarry Smith     SETERRQ(1,0,"Square matrix only for in-place");
697f2501298SSatish Balay   col = (int *) PetscMalloc((1+nbs)*sizeof(int)); CHKPTRQ(col);
698f2501298SSatish Balay   PetscMemzero(col,(1+nbs)*sizeof(int));
699a7c10996SSatish Balay 
700a7c10996SSatish Balay   for ( i=0; i<ai[mbs]; i++ ) col[aj[i]] += 1;
701f2501298SSatish Balay   ierr = MatCreateSeqBAIJ(A->comm,bs,a->n,a->m,PETSC_NULL,col,&C); CHKERRQ(ierr);
702f2501298SSatish Balay   PetscFree(col);
703f2501298SSatish Balay   rows = (int *) PetscMalloc(2*bs*sizeof(int)); CHKPTRQ(rows);
704f2501298SSatish Balay   cols = rows + bs;
705f2501298SSatish Balay   for ( i=0; i<mbs; i++ ) {
706f2501298SSatish Balay     cols[0] = i*bs;
707f2501298SSatish Balay     for (k=1; k<bs; k++ ) cols[k] = cols[k-1] + 1;
708f2501298SSatish Balay     len = ai[i+1] - ai[i];
709f2501298SSatish Balay     for ( j=0; j<len; j++ ) {
710f2501298SSatish Balay       rows[0] = (*aj++)*bs;
711f2501298SSatish Balay       for (k=1; k<bs; k++ ) rows[k] = rows[k-1] + 1;
712f2501298SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES); CHKERRQ(ierr);
713f2501298SSatish Balay       array += bs2;
714f2501298SSatish Balay     }
715f2501298SSatish Balay   }
7161073c447SSatish Balay   PetscFree(rows);
717f2501298SSatish Balay 
7186d4a8577SBarry Smith   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
7196d4a8577SBarry Smith   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
720f2501298SSatish Balay 
721f2501298SSatish Balay   if (B != PETSC_NULL) {
722f2501298SSatish Balay     *B = C;
723f2501298SSatish Balay   } else {
724f2501298SSatish Balay     /* This isn't really an in-place transpose */
725f2501298SSatish Balay     PetscFree(a->a);
726f2501298SSatish Balay     if (!a->singlemalloc) {PetscFree(a->i); PetscFree(a->j);}
727f2501298SSatish Balay     if (a->diag) PetscFree(a->diag);
728f2501298SSatish Balay     if (a->ilen) PetscFree(a->ilen);
729f2501298SSatish Balay     if (a->imax) PetscFree(a->imax);
730f2501298SSatish Balay     if (a->solve_work) PetscFree(a->solve_work);
731f2501298SSatish Balay     PetscFree(a);
732f2501298SSatish Balay     PetscMemcpy(A,C,sizeof(struct _Mat));
733f2501298SSatish Balay     PetscHeaderDestroy(C);
734f2501298SSatish Balay   }
735f2501298SSatish Balay   return 0;
736f2501298SSatish Balay }
737f2501298SSatish Balay 
738f2501298SSatish Balay 
7395615d1e5SSatish Balay #undef __FUNC__
7405615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_SeqBAIJ"
7418f6be9afSLois Curfman McInnes int MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
742584200bdSSatish Balay {
743584200bdSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
744584200bdSSatish Balay   int        fshift = 0,i,j,*ai = a->i, *aj = a->j, *imax = a->imax;
745a7c10996SSatish Balay   int        m = a->m,*ip, N, *ailen = a->ilen;
746d402145bSBarry Smith   int        mbs = a->mbs, bs2 = a->bs2,rmax;
747584200bdSSatish Balay   Scalar     *aa = a->a, *ap;
748584200bdSSatish Balay 
7496d4a8577SBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) return 0;
750584200bdSSatish Balay 
751d402145bSBarry Smith   rmax = ailen[0];
752584200bdSSatish Balay   for ( i=1; i<mbs; i++ ) {
753584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
754584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
755d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
756584200bdSSatish Balay     if (fshift) {
757a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
758584200bdSSatish Balay       N = ailen[i];
759584200bdSSatish Balay       for ( j=0; j<N; j++ ) {
760584200bdSSatish Balay         ip[j-fshift] = ip[j];
7617e67e3f9SSatish Balay         PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(Scalar));
762584200bdSSatish Balay       }
763584200bdSSatish Balay     }
764584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
765584200bdSSatish Balay   }
766584200bdSSatish Balay   if (mbs) {
767584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
768584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
769584200bdSSatish Balay   }
770584200bdSSatish Balay   /* reset ilen and imax for each row */
771584200bdSSatish Balay   for ( i=0; i<mbs; i++ ) {
772584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
773584200bdSSatish Balay   }
774a7c10996SSatish Balay   a->nz = ai[mbs];
775584200bdSSatish Balay 
776584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
777584200bdSSatish Balay   if (fshift && a->diag) {
778584200bdSSatish Balay     PetscFree(a->diag);
779584200bdSSatish Balay     PLogObjectMemory(A,-(m+1)*sizeof(int));
780584200bdSSatish Balay     a->diag = 0;
781584200bdSSatish Balay   }
7823d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n",
783219d9a1aSLois Curfman McInnes            m,a->n,a->bs,fshift*bs2,a->nz*bs2);
7843d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Number of mallocs during MatSetValues is %d\n",
785584200bdSSatish Balay            a->reallocs);
786d402145bSBarry Smith   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Most nonzeros blocks in any row is %d\n",rmax);
787e2f3b5e9SSatish Balay   a->reallocs          = 0;
7884e220ebcSLois Curfman McInnes   A->info.nz_unneeded  = (double)fshift*bs2;
7894e220ebcSLois Curfman McInnes 
790584200bdSSatish Balay   return 0;
791584200bdSSatish Balay }
792584200bdSSatish Balay 
7935615d1e5SSatish Balay #undef __FUNC__
7945615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_SeqBAIJ"
7958f6be9afSLois Curfman McInnes int MatZeroEntries_SeqBAIJ(Mat A)
7962593348eSBarry Smith {
797b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
7989df24120SSatish Balay   PetscMemzero(a->a,a->bs2*a->i[a->mbs]*sizeof(Scalar));
7992593348eSBarry Smith   return 0;
8002593348eSBarry Smith }
8012593348eSBarry Smith 
8025615d1e5SSatish Balay #undef __FUNC__
8035eea60f9SBarry Smith #define __FUNC__ "MatDestroy_SeqBAIJ" /* ADIC Ignore */
804b6490206SBarry Smith int MatDestroy_SeqBAIJ(PetscObject obj)
8052593348eSBarry Smith {
8062593348eSBarry Smith   Mat         A  = (Mat) obj;
807b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
80890f02eecSBarry Smith   int         ierr;
8092593348eSBarry Smith 
8102593348eSBarry Smith #if defined(PETSC_LOG)
8112593348eSBarry Smith   PLogObjectState(obj,"Rows=%d, Cols=%d, NZ=%d",a->m,a->n,a->nz);
8122593348eSBarry Smith #endif
8132593348eSBarry Smith   PetscFree(a->a);
8142593348eSBarry Smith   if (!a->singlemalloc) { PetscFree(a->i); PetscFree(a->j);}
8152593348eSBarry Smith   if (a->diag) PetscFree(a->diag);
8162593348eSBarry Smith   if (a->ilen) PetscFree(a->ilen);
8172593348eSBarry Smith   if (a->imax) PetscFree(a->imax);
8182593348eSBarry Smith   if (a->solve_work) PetscFree(a->solve_work);
819de6a44a3SBarry Smith   if (a->mult_work) PetscFree(a->mult_work);
8202593348eSBarry Smith   PetscFree(a);
82190f02eecSBarry Smith   if (A->mapping) {
82290f02eecSBarry Smith     ierr = ISLocalToGlobalMappingDestroy(A->mapping); CHKERRQ(ierr);
82390f02eecSBarry Smith   }
824f2655603SLois Curfman McInnes   PLogObjectDestroy(A);
825f2655603SLois Curfman McInnes   PetscHeaderDestroy(A);
8262593348eSBarry Smith   return 0;
8272593348eSBarry Smith }
8282593348eSBarry Smith 
8295615d1e5SSatish Balay #undef __FUNC__
8305eea60f9SBarry Smith #define __FUNC__ "MatSetOption_SeqBAIJ" /* ADIC Ignore */
8318f6be9afSLois Curfman McInnes int MatSetOption_SeqBAIJ(Mat A,MatOption op)
8322593348eSBarry Smith {
833b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
8346d4a8577SBarry Smith   if      (op == MAT_ROW_ORIENTED)                 a->roworiented = 1;
8356d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED)              a->roworiented = 0;
8366d4a8577SBarry Smith   else if (op == MAT_COLUMNS_SORTED)               a->sorted      = 1;
837219d9a1aSLois Curfman McInnes   else if (op == MAT_COLUMNS_UNSORTED)             a->sorted      = 0;
8386d4a8577SBarry Smith   else if (op == MAT_NO_NEW_NONZERO_LOCATIONS)     a->nonew       = 1;
839c2653b3dSLois Curfman McInnes   else if (op == MAT_NEW_NONZERO_LOCATION_ERROR)   a->nonew       = -1;
840*96854ed6SLois Curfman McInnes   else if (op == MAT_NEW_NONZERO_ALLOCATION_ERROR) a->nonew       = -2;
8416d4a8577SBarry Smith   else if (op == MAT_YES_NEW_NONZERO_LOCATIONS)    a->nonew       = 0;
8426d4a8577SBarry Smith   else if (op == MAT_ROWS_SORTED ||
843219d9a1aSLois Curfman McInnes            op == MAT_ROWS_UNSORTED ||
8446d4a8577SBarry Smith            op == MAT_SYMMETRIC ||
8456d4a8577SBarry Smith            op == MAT_STRUCTURALLY_SYMMETRIC ||
84690f02eecSBarry Smith            op == MAT_YES_NEW_DIAGONALS ||
8472b362799SSatish Balay            op == MAT_IGNORE_OFF_PROC_ENTRIES)
84894a424c1SBarry Smith     PLogInfo(A,"Info:MatSetOption_SeqBAIJ:Option ignored\n");
8496d4a8577SBarry Smith   else if (op == MAT_NO_NEW_DIAGONALS)
850e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");}
8512593348eSBarry Smith   else
852e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"unknown option");}
8532593348eSBarry Smith   return 0;
8542593348eSBarry Smith }
8552593348eSBarry Smith 
8562593348eSBarry Smith 
8572593348eSBarry Smith /* -------------------------------------------------------*/
8582593348eSBarry Smith /* Should check that shapes of vectors and matrices match */
8592593348eSBarry Smith /* -------------------------------------------------------*/
860b6490206SBarry Smith #include "pinclude/plapack.h"
861b6490206SBarry Smith 
8625615d1e5SSatish Balay #undef __FUNC__
8635615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_1"
86439b95ed1SBarry Smith static int MatMult_SeqBAIJ_1(Mat A,Vec xx,Vec zz)
8652593348eSBarry Smith {
866b6490206SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
86739b95ed1SBarry Smith   register Scalar *x,*z,*v,sum;
868c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
8692593348eSBarry Smith 
870c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
871c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
872b6490206SBarry Smith 
873119a934aSSatish Balay   idx   = a->j;
874119a934aSSatish Balay   v     = a->a;
875119a934aSSatish Balay   ii    = a->i;
876119a934aSSatish Balay 
877119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
878119a934aSSatish Balay     n    = ii[1] - ii[0]; ii++;
879119a934aSSatish Balay     sum  = 0.0;
880119a934aSSatish Balay     while (n--) sum += *v++ * x[*idx++];
8811a6a6d98SBarry Smith     z[i] = sum;
882119a934aSSatish Balay   }
883c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
884c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
88539b95ed1SBarry Smith   PLogFlops(2*a->nz - a->m);
88639b95ed1SBarry Smith   return 0;
88739b95ed1SBarry Smith }
88839b95ed1SBarry Smith 
8895615d1e5SSatish Balay #undef __FUNC__
8905615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_2"
89139b95ed1SBarry Smith static int MatMult_SeqBAIJ_2(Mat A,Vec xx,Vec zz)
89239b95ed1SBarry Smith {
89339b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
89439b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2;
89539b95ed1SBarry Smith   register Scalar x1,x2;
89639b95ed1SBarry Smith   int             mbs=a->mbs,i,*idx,*ii;
897c16cb8f2SBarry Smith   int             j,n;
89839b95ed1SBarry Smith 
899c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
900c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
90139b95ed1SBarry Smith 
90239b95ed1SBarry Smith   idx   = a->j;
90339b95ed1SBarry Smith   v     = a->a;
90439b95ed1SBarry Smith   ii    = a->i;
90539b95ed1SBarry Smith 
906119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
907119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
908119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0;
909119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
910119a934aSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
911119a934aSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
912119a934aSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
913119a934aSSatish Balay       v += 4;
914119a934aSSatish Balay     }
9151a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2;
916119a934aSSatish Balay     z += 2;
917119a934aSSatish Balay   }
918c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
919c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
92039b95ed1SBarry Smith   PLogFlops(4*a->nz - a->m);
92139b95ed1SBarry Smith   return 0;
92239b95ed1SBarry Smith }
92339b95ed1SBarry Smith 
9245615d1e5SSatish Balay #undef __FUNC__
9255615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_3"
92639b95ed1SBarry Smith static int MatMult_SeqBAIJ_3(Mat A,Vec xx,Vec zz)
92739b95ed1SBarry Smith {
92839b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
92939b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
930c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
93139b95ed1SBarry Smith 
932c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
933c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
93439b95ed1SBarry Smith 
93539b95ed1SBarry Smith   idx   = a->j;
93639b95ed1SBarry Smith   v     = a->a;
93739b95ed1SBarry Smith   ii    = a->i;
93839b95ed1SBarry Smith 
939119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
940119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
941119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0;
942119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
943119a934aSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
944119a934aSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
945119a934aSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
946119a934aSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
947119a934aSSatish Balay       v += 9;
948119a934aSSatish Balay     }
9491a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3;
950119a934aSSatish Balay     z += 3;
951119a934aSSatish Balay   }
952c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
953c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
95439b95ed1SBarry Smith   PLogFlops(18*a->nz - a->m);
95539b95ed1SBarry Smith   return 0;
95639b95ed1SBarry Smith }
95739b95ed1SBarry Smith 
9585615d1e5SSatish Balay #undef __FUNC__
9595615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_4"
96039b95ed1SBarry Smith static int MatMult_SeqBAIJ_4(Mat A,Vec xx,Vec zz)
96139b95ed1SBarry Smith {
96239b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
96339b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4;
96439b95ed1SBarry Smith   register Scalar x1,x2,x3,x4;
96539b95ed1SBarry Smith   int             mbs=a->mbs,i,*idx,*ii;
966c16cb8f2SBarry Smith   int             j,n;
96739b95ed1SBarry Smith 
968c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
969c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
97039b95ed1SBarry Smith 
97139b95ed1SBarry Smith   idx   = a->j;
97239b95ed1SBarry Smith   v     = a->a;
97339b95ed1SBarry Smith   ii    = a->i;
97439b95ed1SBarry Smith 
975119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
976119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
977119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0;
978119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
979119a934aSSatish Balay       xb = x + 4*(*idx++);
980119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
981119a934aSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
982119a934aSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
983119a934aSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
984119a934aSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
985119a934aSSatish Balay       v += 16;
986119a934aSSatish Balay     }
9871a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
988119a934aSSatish Balay     z += 4;
989119a934aSSatish Balay   }
990c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
991c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
99239b95ed1SBarry Smith   PLogFlops(32*a->nz - a->m);
99339b95ed1SBarry Smith   return 0;
99439b95ed1SBarry Smith }
99539b95ed1SBarry Smith 
9965615d1e5SSatish Balay #undef __FUNC__
9975615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_5"
99839b95ed1SBarry Smith static int MatMult_SeqBAIJ_5(Mat A,Vec xx,Vec zz)
99939b95ed1SBarry Smith {
100039b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
100139b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5;
100239b95ed1SBarry Smith   register Scalar x1,x2,x3,x4,x5;
1003c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
100439b95ed1SBarry Smith 
1005c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1006c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
100739b95ed1SBarry Smith 
100839b95ed1SBarry Smith   idx   = a->j;
100939b95ed1SBarry Smith   v     = a->a;
101039b95ed1SBarry Smith   ii    = a->i;
101139b95ed1SBarry Smith 
1012119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1013119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
1014119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0;
1015119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1016119a934aSSatish Balay       xb = x + 5*(*idx++);
1017119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1018119a934aSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1019119a934aSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1020119a934aSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1021119a934aSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1022119a934aSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1023119a934aSSatish Balay       v += 25;
1024119a934aSSatish Balay     }
10251a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1026119a934aSSatish Balay     z += 5;
1027119a934aSSatish Balay   }
1028c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1029c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
103039b95ed1SBarry Smith   PLogFlops(50*a->nz - a->m);
103139b95ed1SBarry Smith   return 0;
103239b95ed1SBarry Smith }
103339b95ed1SBarry Smith 
10345615d1e5SSatish Balay #undef __FUNC__
103548e9ddb2SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_7"
103648e9ddb2SSatish Balay static int MatMult_SeqBAIJ_7(Mat A,Vec xx,Vec zz)
103748e9ddb2SSatish Balay {
103848e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
103948e9ddb2SSatish Balay   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
104048e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
104148e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
104248e9ddb2SSatish Balay 
104348e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
104448e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
104548e9ddb2SSatish Balay 
104648e9ddb2SSatish Balay   idx   = a->j;
104748e9ddb2SSatish Balay   v     = a->a;
104848e9ddb2SSatish Balay   ii    = a->i;
104948e9ddb2SSatish Balay 
105048e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
105148e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
105248e9ddb2SSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; sum6 = 0.0; sum7 = 0.0;
105348e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
105448e9ddb2SSatish Balay       xb = x + 7*(*idx++);
105548e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
105648e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
105748e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
105848e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
105948e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
106048e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
106148e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
106248e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
106348e9ddb2SSatish Balay       v += 49;
106448e9ddb2SSatish Balay     }
106548e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
106648e9ddb2SSatish Balay     z += 7;
106748e9ddb2SSatish Balay   }
106848e9ddb2SSatish Balay 
106948e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
107048e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
107148e9ddb2SSatish Balay   PLogFlops(98*a->nz - a->m);
107248e9ddb2SSatish Balay   return 0;
107348e9ddb2SSatish Balay }
107448e9ddb2SSatish Balay 
107548e9ddb2SSatish Balay #undef __FUNC__
10765615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_N"
107739b95ed1SBarry Smith static int MatMult_SeqBAIJ_N(Mat A,Vec xx,Vec zz)
107839b95ed1SBarry Smith {
107939b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
108039b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb;
1081c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2;
1082c16cb8f2SBarry Smith   int             _One = 1,ncols,k;
1083c16cb8f2SBarry Smith   Scalar          _DOne = 1.0,*work,*workt,_DZero = 0.0;
108439b95ed1SBarry Smith 
1085c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1086c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
108739b95ed1SBarry Smith 
108839b95ed1SBarry Smith   idx   = a->j;
108939b95ed1SBarry Smith   v     = a->a;
109039b95ed1SBarry Smith   ii    = a->i;
109139b95ed1SBarry Smith 
109239b95ed1SBarry Smith 
1093119a934aSSatish Balay   if (!a->mult_work) {
10943b547af2SSatish Balay     k = PetscMax(a->m,a->n);
10952b3076dcSSatish Balay     a->mult_work = (Scalar *) PetscMalloc((k+1)*sizeof(Scalar));CHKPTRQ(a->mult_work);
1096119a934aSSatish Balay   }
1097119a934aSSatish Balay   work = a->mult_work;
1098119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1099119a934aSSatish Balay     n     = ii[1] - ii[0]; ii++;
1100119a934aSSatish Balay     ncols = n*bs;
1101119a934aSSatish Balay     workt = work;
1102119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1103119a934aSSatish Balay       xb = x + bs*(*idx++);
1104119a934aSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1105119a934aSSatish Balay       workt += bs;
1106119a934aSSatish Balay     }
11071a6a6d98SBarry Smith     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DZero,z,&_One);
1108119a934aSSatish Balay     v += n*bs2;
1109119a934aSSatish Balay     z += bs;
1110119a934aSSatish Balay   }
1111c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1112c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
11131a6a6d98SBarry Smith   PLogFlops(2*a->nz*bs2 - a->m);
1114bb42667fSSatish Balay   return 0;
1115bb42667fSSatish Balay }
1116bb42667fSSatish Balay 
11175615d1e5SSatish Balay #undef __FUNC__
11185615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_1"
1119f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_1(Mat A,Vec xx,Vec yy,Vec zz)
1120f44d3a6dSSatish Balay {
1121f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1122f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,sum;
1123c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
1124f44d3a6dSSatish Balay 
1125c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1126c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1127c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1128f44d3a6dSSatish Balay 
1129f44d3a6dSSatish Balay   idx   = a->j;
1130f44d3a6dSSatish Balay   v     = a->a;
1131f44d3a6dSSatish Balay   ii    = a->i;
1132f44d3a6dSSatish Balay 
1133f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1134f44d3a6dSSatish Balay     n    = ii[1] - ii[0]; ii++;
1135f44d3a6dSSatish Balay     sum  = y[i];
1136f44d3a6dSSatish Balay     while (n--) sum += *v++ * x[*idx++];
1137f44d3a6dSSatish Balay     z[i] = sum;
1138f44d3a6dSSatish Balay   }
1139c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1140c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1141c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1142f44d3a6dSSatish Balay   PLogFlops(2*a->nz);
1143f44d3a6dSSatish Balay   return 0;
1144f44d3a6dSSatish Balay }
1145f44d3a6dSSatish Balay 
11465615d1e5SSatish Balay #undef __FUNC__
11475615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_2"
1148f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_2(Mat A,Vec xx,Vec yy,Vec zz)
1149f44d3a6dSSatish Balay {
1150f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1151f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2;
1152f44d3a6dSSatish Balay   register Scalar x1,x2;
1153f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii;
1154c16cb8f2SBarry Smith   int             j,n;
1155f44d3a6dSSatish Balay 
1156c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1157c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1158c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1159f44d3a6dSSatish Balay 
1160f44d3a6dSSatish Balay   idx   = a->j;
1161f44d3a6dSSatish Balay   v     = a->a;
1162f44d3a6dSSatish Balay   ii    = a->i;
1163f44d3a6dSSatish Balay 
1164f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1165f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1166f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1];
1167f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1168f44d3a6dSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
1169f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
1170f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
1171f44d3a6dSSatish Balay       v += 4;
1172f44d3a6dSSatish Balay     }
1173f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2;
1174f44d3a6dSSatish Balay     z += 2; y += 2;
1175f44d3a6dSSatish Balay   }
1176c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1177c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1178c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1179f44d3a6dSSatish Balay   PLogFlops(4*a->nz);
1180f44d3a6dSSatish Balay   return 0;
1181f44d3a6dSSatish Balay }
1182f44d3a6dSSatish Balay 
11835615d1e5SSatish Balay #undef __FUNC__
11845615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_3"
1185f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_3(Mat A,Vec xx,Vec yy,Vec zz)
1186f44d3a6dSSatish Balay {
1187f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1188f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
1189c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1190f44d3a6dSSatish Balay 
1191c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1192c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1193c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1194f44d3a6dSSatish Balay 
1195f44d3a6dSSatish Balay   idx   = a->j;
1196f44d3a6dSSatish Balay   v     = a->a;
1197f44d3a6dSSatish Balay   ii    = a->i;
1198f44d3a6dSSatish Balay 
1199f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1200f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1201f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2];
1202f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1203f44d3a6dSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1204f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
1205f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
1206f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
1207f44d3a6dSSatish Balay       v += 9;
1208f44d3a6dSSatish Balay     }
1209f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3;
1210f44d3a6dSSatish Balay     z += 3; y += 3;
1211f44d3a6dSSatish Balay   }
1212c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1213c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1214c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1215f44d3a6dSSatish Balay   PLogFlops(18*a->nz);
1216f44d3a6dSSatish Balay   return 0;
1217f44d3a6dSSatish Balay }
1218f44d3a6dSSatish Balay 
12195615d1e5SSatish Balay #undef __FUNC__
12205615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_4"
1221f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_4(Mat A,Vec xx,Vec yy,Vec zz)
1222f44d3a6dSSatish Balay {
1223f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1224f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4;
1225f44d3a6dSSatish Balay   register Scalar x1,x2,x3,x4;
1226f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii;
1227c16cb8f2SBarry Smith   int             j,n;
1228f44d3a6dSSatish Balay 
1229c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1230c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1231c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1232f44d3a6dSSatish Balay 
1233f44d3a6dSSatish Balay   idx   = a->j;
1234f44d3a6dSSatish Balay   v     = a->a;
1235f44d3a6dSSatish Balay   ii    = a->i;
1236f44d3a6dSSatish Balay 
1237f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1238f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1239f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3];
1240f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1241f44d3a6dSSatish Balay       xb = x + 4*(*idx++);
1242f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1243f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
1244f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
1245f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
1246f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
1247f44d3a6dSSatish Balay       v += 16;
1248f44d3a6dSSatish Balay     }
1249f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
1250f44d3a6dSSatish Balay     z += 4; y += 4;
1251f44d3a6dSSatish Balay   }
1252c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1253c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1254c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1255f44d3a6dSSatish Balay   PLogFlops(32*a->nz);
1256f44d3a6dSSatish Balay   return 0;
1257f44d3a6dSSatish Balay }
1258f44d3a6dSSatish Balay 
12595615d1e5SSatish Balay #undef __FUNC__
12605615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_5"
1261f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_5(Mat A,Vec xx,Vec yy,Vec zz)
1262f44d3a6dSSatish Balay {
1263f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1264f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5;
1265f44d3a6dSSatish Balay   register Scalar x1,x2,x3,x4,x5;
1266c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1267f44d3a6dSSatish Balay 
1268c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1269c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1270c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1271f44d3a6dSSatish Balay 
1272f44d3a6dSSatish Balay   idx   = a->j;
1273f44d3a6dSSatish Balay   v     = a->a;
1274f44d3a6dSSatish Balay   ii    = a->i;
1275f44d3a6dSSatish Balay 
1276f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1277f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1278f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4];
1279f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1280f44d3a6dSSatish Balay       xb = x + 5*(*idx++);
1281f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1282f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1283f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1284f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1285f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1286f44d3a6dSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1287f44d3a6dSSatish Balay       v += 25;
1288f44d3a6dSSatish Balay     }
1289f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1290f44d3a6dSSatish Balay     z += 5; y += 5;
1291f44d3a6dSSatish Balay   }
1292c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1293c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1294c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1295f44d3a6dSSatish Balay   PLogFlops(50*a->nz);
1296f44d3a6dSSatish Balay   return 0;
1297f44d3a6dSSatish Balay }
1298f44d3a6dSSatish Balay 
12995615d1e5SSatish Balay #undef __FUNC__
130048e9ddb2SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_7"
130148e9ddb2SSatish Balay static int MatMultAdd_SeqBAIJ_7(Mat A,Vec xx,Vec yy,Vec zz)
130248e9ddb2SSatish Balay {
130348e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
130448e9ddb2SSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
130548e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
130648e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
130748e9ddb2SSatish Balay 
130848e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
130948e9ddb2SSatish Balay   VecGetArray_Fast(yy,y);
131048e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
131148e9ddb2SSatish Balay 
131248e9ddb2SSatish Balay   idx   = a->j;
131348e9ddb2SSatish Balay   v     = a->a;
131448e9ddb2SSatish Balay   ii    = a->i;
131548e9ddb2SSatish Balay 
131648e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
131748e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
131848e9ddb2SSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; sum6 = y[5]; sum7 = y[6];
131948e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
132048e9ddb2SSatish Balay       xb = x + 7*(*idx++);
132148e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
132248e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
132348e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
132448e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
132548e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
132648e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
132748e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
132848e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
132948e9ddb2SSatish Balay       v += 49;
133048e9ddb2SSatish Balay     }
133148e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
133248e9ddb2SSatish Balay     z += 7; y += 7;
133348e9ddb2SSatish Balay   }
133448e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
133548e9ddb2SSatish Balay   VecRestoreArray_Fast(yy,y);
133648e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
133748e9ddb2SSatish Balay   PLogFlops(98*a->nz);
133848e9ddb2SSatish Balay   return 0;
133948e9ddb2SSatish Balay }
134048e9ddb2SSatish Balay 
134148e9ddb2SSatish Balay 
134248e9ddb2SSatish Balay #undef __FUNC__
13435615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_N"
1344f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_N(Mat A,Vec xx,Vec yy,Vec zz)
1345f44d3a6dSSatish Balay {
1346f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1347f44d3a6dSSatish Balay   register Scalar *x,*z,*v,*xb;
1348f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2,ierr;
1349f44d3a6dSSatish Balay   int             _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1350f44d3a6dSSatish Balay 
1351f44d3a6dSSatish Balay   if ( xx != yy) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1352f44d3a6dSSatish Balay 
1353c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1354c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1355f44d3a6dSSatish Balay 
1356f44d3a6dSSatish Balay   idx   = a->j;
1357f44d3a6dSSatish Balay   v     = a->a;
1358f44d3a6dSSatish Balay   ii    = a->i;
1359f44d3a6dSSatish Balay 
1360f44d3a6dSSatish Balay 
1361f44d3a6dSSatish Balay   if (!a->mult_work) {
1362f44d3a6dSSatish Balay     k = PetscMax(a->m,a->n);
1363f44d3a6dSSatish Balay     a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));CHKPTRQ(a->mult_work);
1364f44d3a6dSSatish Balay   }
1365f44d3a6dSSatish Balay   work = a->mult_work;
1366f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1367f44d3a6dSSatish Balay     n     = ii[1] - ii[0]; ii++;
1368f44d3a6dSSatish Balay     ncols = n*bs;
1369f44d3a6dSSatish Balay     workt = work;
1370f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1371f44d3a6dSSatish Balay       xb = x + bs*(*idx++);
1372f44d3a6dSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1373f44d3a6dSSatish Balay       workt += bs;
1374f44d3a6dSSatish Balay     }
1375f44d3a6dSSatish Balay     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DOne,z,&_One);
1376f44d3a6dSSatish Balay     v += n*bs2;
1377f44d3a6dSSatish Balay     z += bs;
1378f44d3a6dSSatish Balay   }
1379c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1380c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1381f44d3a6dSSatish Balay   PLogFlops(2*a->nz*bs2 );
1382f44d3a6dSSatish Balay   return 0;
1383f44d3a6dSSatish Balay }
1384f44d3a6dSSatish Balay 
13855615d1e5SSatish Balay #undef __FUNC__
13865615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_SeqBAIJ"
13878f6be9afSLois Curfman McInnes int MatMultTrans_SeqBAIJ(Mat A,Vec xx,Vec zz)
1388bb42667fSSatish Balay {
1389bb42667fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
13901a6a6d98SBarry Smith   Scalar          *xg,*zg,*zb;
1391bb42667fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1392bb1453f0SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
13939df24120SSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1394119a934aSSatish Balay 
1395119a934aSSatish Balay 
139690f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
139790f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1398bb1453f0SSatish Balay   PetscMemzero(z,N*sizeof(Scalar));
1399bb42667fSSatish Balay 
1400119a934aSSatish Balay   idx   = a->j;
1401119a934aSSatish Balay   v     = a->a;
1402119a934aSSatish Balay   ii    = a->i;
1403119a934aSSatish Balay 
1404119a934aSSatish Balay   switch (bs) {
1405119a934aSSatish Balay   case 1:
1406119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1407119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1408119a934aSSatish Balay       xb = x + i; x1 = xb[0];
1409119a934aSSatish Balay       ib = idx + ai[i];
1410119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1411bb1453f0SSatish Balay         rval    = ib[j];
1412bb1453f0SSatish Balay         z[rval] += *v++ * x1;
1413119a934aSSatish Balay       }
1414119a934aSSatish Balay     }
1415119a934aSSatish Balay     break;
1416119a934aSSatish Balay   case 2:
1417119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1418119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1419119a934aSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1420119a934aSSatish Balay       ib = idx + ai[i];
1421119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1422119a934aSSatish Balay         rval      = ib[j]*2;
1423bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1424bb1453f0SSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1425119a934aSSatish Balay         v += 4;
1426119a934aSSatish Balay       }
1427119a934aSSatish Balay     }
1428119a934aSSatish Balay     break;
1429119a934aSSatish Balay   case 3:
1430119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1431119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1432119a934aSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1433119a934aSSatish Balay       ib = idx + ai[i];
1434119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1435119a934aSSatish Balay         rval      = ib[j]*3;
1436bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1437bb1453f0SSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1438bb1453f0SSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1439119a934aSSatish Balay         v += 9;
1440119a934aSSatish Balay       }
1441119a934aSSatish Balay     }
1442119a934aSSatish Balay     break;
1443119a934aSSatish Balay   case 4:
1444119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1445119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1446119a934aSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1447119a934aSSatish Balay       ib = idx + ai[i];
1448119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1449119a934aSSatish Balay         rval      = ib[j]*4;
1450bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1451bb1453f0SSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1452bb1453f0SSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1453bb1453f0SSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1454119a934aSSatish Balay         v += 16;
1455119a934aSSatish Balay       }
1456119a934aSSatish Balay     }
1457119a934aSSatish Balay     break;
1458119a934aSSatish Balay   case 5:
1459119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1460119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1461119a934aSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1462119a934aSSatish Balay       x4 = xb[3];   x5 = xb[4];
1463119a934aSSatish Balay       ib = idx + ai[i];
1464119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1465119a934aSSatish Balay         rval      = ib[j]*5;
1466bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1467bb1453f0SSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1468bb1453f0SSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1469bb1453f0SSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1470bb1453f0SSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1471119a934aSSatish Balay         v += 25;
1472119a934aSSatish Balay       }
1473119a934aSSatish Balay     }
1474119a934aSSatish Balay     break;
1475119a934aSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1476119a934aSSatish Balay     default: {
1477119a934aSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1478119a934aSSatish Balay       if (!a->mult_work) {
14793b547af2SSatish Balay         k = PetscMax(a->m,a->n);
1480bb42667fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1481119a934aSSatish Balay         CHKPTRQ(a->mult_work);
1482119a934aSSatish Balay       }
1483119a934aSSatish Balay       work = a->mult_work;
1484119a934aSSatish Balay       for ( i=0; i<mbs; i++ ) {
1485119a934aSSatish Balay         n     = ii[1] - ii[0]; ii++;
1486119a934aSSatish Balay         ncols = n*bs;
1487119a934aSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1488119a934aSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1489119a934aSSatish Balay         v += n*bs2;
1490119a934aSSatish Balay         x += bs;
1491119a934aSSatish Balay         workt = work;
1492119a934aSSatish Balay         for ( j=0; j<n; j++ ) {
1493119a934aSSatish Balay           zb = z + bs*(*idx++);
1494bb1453f0SSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1495119a934aSSatish Balay           workt += bs;
1496119a934aSSatish Balay         }
1497119a934aSSatish Balay       }
1498119a934aSSatish Balay     }
1499119a934aSSatish Balay   }
15000419e6cdSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
15010419e6cdSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1502faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2 - a->n);
1503faf6580fSSatish Balay   return 0;
1504faf6580fSSatish Balay }
15051c351548SSatish Balay 
15065615d1e5SSatish Balay #undef __FUNC__
15075615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_SeqBAIJ"
15088f6be9afSLois Curfman McInnes int MatMultTransAdd_SeqBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1509faf6580fSSatish Balay {
1510faf6580fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1511faf6580fSSatish Balay   Scalar          *xg,*zg,*zb;
1512faf6580fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1513faf6580fSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
1514faf6580fSSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1515faf6580fSSatish Balay 
1516faf6580fSSatish Balay 
1517faf6580fSSatish Balay 
151890f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
151990f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1520faf6580fSSatish Balay 
1521648c1d95SSatish Balay   if ( yy != zz ) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1522648c1d95SSatish Balay   else PetscMemzero(z,N*sizeof(Scalar));
1523648c1d95SSatish Balay 
1524faf6580fSSatish Balay 
1525faf6580fSSatish Balay   idx   = a->j;
1526faf6580fSSatish Balay   v     = a->a;
1527faf6580fSSatish Balay   ii    = a->i;
1528faf6580fSSatish Balay 
1529faf6580fSSatish Balay   switch (bs) {
1530faf6580fSSatish Balay   case 1:
1531faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1532faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1533faf6580fSSatish Balay       xb = x + i; x1 = xb[0];
1534faf6580fSSatish Balay       ib = idx + ai[i];
1535faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1536faf6580fSSatish Balay         rval    = ib[j];
1537faf6580fSSatish Balay         z[rval] += *v++ * x1;
1538faf6580fSSatish Balay       }
1539faf6580fSSatish Balay     }
1540faf6580fSSatish Balay     break;
1541faf6580fSSatish Balay   case 2:
1542faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1543faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1544faf6580fSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1545faf6580fSSatish Balay       ib = idx + ai[i];
1546faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1547faf6580fSSatish Balay         rval      = ib[j]*2;
1548faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1549faf6580fSSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1550faf6580fSSatish Balay         v += 4;
1551faf6580fSSatish Balay       }
1552faf6580fSSatish Balay     }
1553faf6580fSSatish Balay     break;
1554faf6580fSSatish Balay   case 3:
1555faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1556faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1557faf6580fSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1558faf6580fSSatish Balay       ib = idx + ai[i];
1559faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1560faf6580fSSatish Balay         rval      = ib[j]*3;
1561faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1562faf6580fSSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1563faf6580fSSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1564faf6580fSSatish Balay         v += 9;
1565faf6580fSSatish Balay       }
1566faf6580fSSatish Balay     }
1567faf6580fSSatish Balay     break;
1568faf6580fSSatish Balay   case 4:
1569faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1570faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1571faf6580fSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1572faf6580fSSatish Balay       ib = idx + ai[i];
1573faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1574faf6580fSSatish Balay         rval      = ib[j]*4;
1575faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1576faf6580fSSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1577faf6580fSSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1578faf6580fSSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1579faf6580fSSatish Balay         v += 16;
1580faf6580fSSatish Balay       }
1581faf6580fSSatish Balay     }
1582faf6580fSSatish Balay     break;
1583faf6580fSSatish Balay   case 5:
1584faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1585faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1586faf6580fSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1587faf6580fSSatish Balay       x4 = xb[3];   x5 = xb[4];
1588faf6580fSSatish Balay       ib = idx + ai[i];
1589faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1590faf6580fSSatish Balay         rval      = ib[j]*5;
1591faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1592faf6580fSSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1593faf6580fSSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1594faf6580fSSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1595faf6580fSSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1596faf6580fSSatish Balay         v += 25;
1597faf6580fSSatish Balay       }
1598faf6580fSSatish Balay     }
1599faf6580fSSatish Balay     break;
1600faf6580fSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1601faf6580fSSatish Balay     default: {
1602faf6580fSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1603faf6580fSSatish Balay       if (!a->mult_work) {
1604faf6580fSSatish Balay         k = PetscMax(a->m,a->n);
1605faf6580fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1606faf6580fSSatish Balay         CHKPTRQ(a->mult_work);
1607faf6580fSSatish Balay       }
1608faf6580fSSatish Balay       work = a->mult_work;
1609faf6580fSSatish Balay       for ( i=0; i<mbs; i++ ) {
1610faf6580fSSatish Balay         n     = ii[1] - ii[0]; ii++;
1611faf6580fSSatish Balay         ncols = n*bs;
1612faf6580fSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1613faf6580fSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1614faf6580fSSatish Balay         v += n*bs2;
1615faf6580fSSatish Balay         x += bs;
1616faf6580fSSatish Balay         workt = work;
1617faf6580fSSatish Balay         for ( j=0; j<n; j++ ) {
1618faf6580fSSatish Balay           zb = z + bs*(*idx++);
1619faf6580fSSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1620faf6580fSSatish Balay           workt += bs;
1621faf6580fSSatish Balay         }
1622faf6580fSSatish Balay       }
1623faf6580fSSatish Balay     }
1624faf6580fSSatish Balay   }
1625faf6580fSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
1626faf6580fSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1627faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2);
16282593348eSBarry Smith   return 0;
16292593348eSBarry Smith }
16302593348eSBarry Smith 
16315615d1e5SSatish Balay #undef __FUNC__
16325eea60f9SBarry Smith #define __FUNC__ "MatGetInfo_SeqBAIJ" /* ADIC Ignore */
16338f6be9afSLois Curfman McInnes int MatGetInfo_SeqBAIJ(Mat A,MatInfoType flag,MatInfo *info)
16342593348eSBarry Smith {
1635b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
16364e220ebcSLois Curfman McInnes 
16374e220ebcSLois Curfman McInnes   info->rows_global    = (double)a->m;
16384e220ebcSLois Curfman McInnes   info->columns_global = (double)a->n;
16394e220ebcSLois Curfman McInnes   info->rows_local     = (double)a->m;
16404e220ebcSLois Curfman McInnes   info->columns_local  = (double)a->n;
16414e220ebcSLois Curfman McInnes   info->block_size     = a->bs2;
16424e220ebcSLois Curfman McInnes   info->nz_allocated   = a->maxnz;
16434e220ebcSLois Curfman McInnes   info->nz_used        = a->bs2*a->nz;
16444e220ebcSLois Curfman McInnes   info->nz_unneeded    = (double)(info->nz_allocated - info->nz_used);
16454e220ebcSLois Curfman McInnes   /*  if (info->nz_unneeded != A->info.nz_unneeded)
16464e220ebcSLois Curfman McInnes     printf("space descrepancy: maxnz-nz = %d, nz_unneeded = %d\n",(int)info->nz_unneeded,(int)A->info.nz_unneeded); */
16474e220ebcSLois Curfman McInnes   info->assemblies   = A->num_ass;
16484e220ebcSLois Curfman McInnes   info->mallocs      = a->reallocs;
16494e220ebcSLois Curfman McInnes   info->memory       = A->mem;
16504e220ebcSLois Curfman McInnes   if (A->factor) {
16514e220ebcSLois Curfman McInnes     info->fill_ratio_given  = A->info.fill_ratio_given;
16524e220ebcSLois Curfman McInnes     info->fill_ratio_needed = A->info.fill_ratio_needed;
16534e220ebcSLois Curfman McInnes     info->factor_mallocs    = A->info.factor_mallocs;
16544e220ebcSLois Curfman McInnes   } else {
16554e220ebcSLois Curfman McInnes     info->fill_ratio_given  = 0;
16564e220ebcSLois Curfman McInnes     info->fill_ratio_needed = 0;
16574e220ebcSLois Curfman McInnes     info->factor_mallocs    = 0;
16584e220ebcSLois Curfman McInnes   }
16592593348eSBarry Smith   return 0;
16602593348eSBarry Smith }
16612593348eSBarry Smith 
16625615d1e5SSatish Balay #undef __FUNC__
16635615d1e5SSatish Balay #define __FUNC__ "MatEqual_SeqBAIJ"
16648f6be9afSLois Curfman McInnes int MatEqual_SeqBAIJ(Mat A,Mat B, PetscTruth* flg)
166591d316f6SSatish Balay {
166691d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
166791d316f6SSatish Balay 
1668e3372554SBarry Smith   if (B->type !=MATSEQBAIJ)SETERRQ(1,0,"Matrices must be same type");
166991d316f6SSatish Balay 
167091d316f6SSatish Balay   /* If the  matrix/block dimensions are not equal, or no of nonzeros or shift */
167191d316f6SSatish Balay   if ((a->m != b->m) || (a->n !=b->n) || (a->bs != b->bs)||
1672a7c10996SSatish Balay       (a->nz != b->nz)) {
167391d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
167491d316f6SSatish Balay   }
167591d316f6SSatish Balay 
167691d316f6SSatish Balay   /* if the a->i are the same */
167791d316f6SSatish Balay   if (PetscMemcmp(a->i,b->i, (a->mbs+1)*sizeof(int))) {
167891d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
167991d316f6SSatish Balay   }
168091d316f6SSatish Balay 
168191d316f6SSatish Balay   /* if a->j are the same */
168291d316f6SSatish Balay   if (PetscMemcmp(a->j,b->j,(a->nz)*sizeof(int))) {
168391d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
168491d316f6SSatish Balay   }
168591d316f6SSatish Balay 
168691d316f6SSatish Balay   /* if a->a are the same */
168791d316f6SSatish Balay   if (PetscMemcmp(a->a, b->a,(a->nz)*(a->bs)*(a->bs)*sizeof(Scalar))) {
168891d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
168991d316f6SSatish Balay   }
169091d316f6SSatish Balay   *flg = PETSC_TRUE;
169191d316f6SSatish Balay   return 0;
169291d316f6SSatish Balay 
169391d316f6SSatish Balay }
169491d316f6SSatish Balay 
16955615d1e5SSatish Balay #undef __FUNC__
16965615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_SeqBAIJ"
16978f6be9afSLois Curfman McInnes int MatGetDiagonal_SeqBAIJ(Mat A,Vec v)
169891d316f6SSatish Balay {
169991d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
17007e67e3f9SSatish Balay   int         i,j,k,n,row,bs,*ai,*aj,ambs,bs2;
170117e48fc4SSatish Balay   Scalar      *x, zero = 0.0,*aa,*aa_j;
170217e48fc4SSatish Balay 
17030513a670SBarry Smith   if (A->factor) SETERRQ(1,0,"Not for factored matrix");
170417e48fc4SSatish Balay   bs   = a->bs;
170517e48fc4SSatish Balay   aa   = a->a;
170617e48fc4SSatish Balay   ai   = a->i;
170717e48fc4SSatish Balay   aj   = a->j;
170817e48fc4SSatish Balay   ambs = a->mbs;
17099df24120SSatish Balay   bs2  = a->bs2;
171091d316f6SSatish Balay 
171191d316f6SSatish Balay   VecSet(&zero,v);
171290f02eecSBarry Smith   VecGetArray_Fast(v,x); VecGetLocalSize_Fast(v,n);
1713e3372554SBarry Smith   if (n != a->m) SETERRQ(1,0,"Nonconforming matrix and vector");
171417e48fc4SSatish Balay   for ( i=0; i<ambs; i++ ) {
171517e48fc4SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
171617e48fc4SSatish Balay       if (aj[j] == i) {
171717e48fc4SSatish Balay         row  = i*bs;
17187e67e3f9SSatish Balay         aa_j = aa+j*bs2;
17197e67e3f9SSatish Balay         for (k=0; k<bs2; k+=(bs+1),row++) x[row] = aa_j[k];
172091d316f6SSatish Balay         break;
172191d316f6SSatish Balay       }
172291d316f6SSatish Balay     }
172391d316f6SSatish Balay   }
172491d316f6SSatish Balay   return 0;
172591d316f6SSatish Balay }
172691d316f6SSatish Balay 
17275615d1e5SSatish Balay #undef __FUNC__
17285615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_SeqBAIJ"
17298f6be9afSLois Curfman McInnes int MatDiagonalScale_SeqBAIJ(Mat A,Vec ll,Vec rr)
17309867e207SSatish Balay {
17319867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
17329867e207SSatish Balay   Scalar      *l,*r,x,*v,*aa,*li,*ri;
17337e67e3f9SSatish Balay   int         i,j,k,lm,rn,M,m,n,*ai,*aj,mbs,tmp,bs,bs2;
17349867e207SSatish Balay 
17359867e207SSatish Balay   ai  = a->i;
17369867e207SSatish Balay   aj  = a->j;
17379867e207SSatish Balay   aa  = a->a;
17389867e207SSatish Balay   m   = a->m;
17399867e207SSatish Balay   n   = a->n;
17409867e207SSatish Balay   bs  = a->bs;
17419867e207SSatish Balay   mbs = a->mbs;
17429df24120SSatish Balay   bs2 = a->bs2;
17439867e207SSatish Balay   if (ll) {
174490f02eecSBarry Smith     VecGetArray_Fast(ll,l); VecGetLocalSize_Fast(ll,lm);
1745e3372554SBarry Smith     if (lm != m) SETERRQ(1,0,"Left scaling vector wrong length");
17469867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
17479867e207SSatish Balay       M  = ai[i+1] - ai[i];
17489867e207SSatish Balay       li = l + i*bs;
17497e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
17509867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
17517e67e3f9SSatish Balay         for ( k=0; k<bs2; k++ ) {
17529867e207SSatish Balay           (*v++) *= li[k%bs];
17539867e207SSatish Balay         }
17549867e207SSatish Balay       }
17559867e207SSatish Balay     }
17569867e207SSatish Balay   }
17579867e207SSatish Balay 
17589867e207SSatish Balay   if (rr) {
175990f02eecSBarry Smith     VecGetArray_Fast(rr,r); VecGetLocalSize_Fast(rr,rn);
1760e3372554SBarry Smith     if (rn != n) SETERRQ(1,0,"Right scaling vector wrong length");
17619867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
17629867e207SSatish Balay       M  = ai[i+1] - ai[i];
17637e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
17649867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
17659867e207SSatish Balay         ri = r + bs*aj[ai[i]+j];
17669867e207SSatish Balay         for ( k=0; k<bs; k++ ) {
17679867e207SSatish Balay           x = ri[k];
17689867e207SSatish Balay           for ( tmp=0; tmp<bs; tmp++ ) (*v++) *= x;
17699867e207SSatish Balay         }
17709867e207SSatish Balay       }
17719867e207SSatish Balay     }
17729867e207SSatish Balay   }
17739867e207SSatish Balay   return 0;
17749867e207SSatish Balay }
17759867e207SSatish Balay 
17769867e207SSatish Balay 
1777b6490206SBarry Smith extern int MatLUFactorSymbolic_SeqBAIJ(Mat,IS,IS,double,Mat*);
1778b6490206SBarry Smith extern int MatLUFactor_SeqBAIJ(Mat,IS,IS,double);
17792a38ea04SSatish Balay extern int MatIncreaseOverlap_SeqBAIJ(Mat,int,IS*,int);
1780736121d4SSatish Balay extern int MatGetSubMatrix_SeqBAIJ(Mat,IS,IS,MatGetSubMatrixCall,Mat*);
1781736121d4SSatish Balay extern int MatGetSubMatrices_SeqBAIJ(Mat,int,IS*,IS*,MatGetSubMatrixCall,Mat**);
17821a6a6d98SBarry Smith 
17831a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_N(Mat,Vec,Vec);
17841a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_1(Mat,Vec,Vec);
17851a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_2(Mat,Vec,Vec);
17861a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_3(Mat,Vec,Vec);
17871a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_4(Mat,Vec,Vec);
17881a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_5(Mat,Vec,Vec);
178948e9ddb2SSatish Balay extern int MatSolve_SeqBAIJ_7(Mat,Vec,Vec);
17901a6a6d98SBarry Smith 
17917fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_N(Mat,Mat*);
17927fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_1(Mat,Mat*);
17937fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_2(Mat,Mat*);
17947fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_3(Mat,Mat*);
17957fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_4(Mat,Mat*);
17967fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_5(Mat,Mat*);
17972593348eSBarry Smith 
17985615d1e5SSatish Balay #undef __FUNC__
17995615d1e5SSatish Balay #define __FUNC__ "MatNorm_SeqBAIJ"
18008f6be9afSLois Curfman McInnes int MatNorm_SeqBAIJ(Mat A,NormType type,double *norm)
18012593348eSBarry Smith {
1802b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
18032593348eSBarry Smith   Scalar      *v = a->a;
18042593348eSBarry Smith   double      sum = 0.0;
18059df24120SSatish Balay   int         i,nz=a->nz,bs2=a->bs2;
18062593348eSBarry Smith 
18072593348eSBarry Smith   if (type == NORM_FROBENIUS) {
18080419e6cdSSatish Balay     for (i=0; i< bs2*nz; i++ ) {
18092593348eSBarry Smith #if defined(PETSC_COMPLEX)
18102593348eSBarry Smith       sum += real(conj(*v)*(*v)); v++;
18112593348eSBarry Smith #else
18122593348eSBarry Smith       sum += (*v)*(*v); v++;
18132593348eSBarry Smith #endif
18142593348eSBarry Smith     }
18152593348eSBarry Smith     *norm = sqrt(sum);
18162593348eSBarry Smith   }
18172593348eSBarry Smith   else {
1818e3372554SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
18192593348eSBarry Smith   }
18202593348eSBarry Smith   return 0;
18212593348eSBarry Smith }
18222593348eSBarry Smith 
18232593348eSBarry Smith /*
18242593348eSBarry Smith      note: This can only work for identity for row and col. It would
18252593348eSBarry Smith    be good to check this and otherwise generate an error.
18262593348eSBarry Smith */
18275615d1e5SSatish Balay #undef __FUNC__
18285615d1e5SSatish Balay #define __FUNC__ "MatILUFactor_SeqBAIJ"
18298f6be9afSLois Curfman McInnes int MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,double efill,int fill)
18302593348eSBarry Smith {
1831b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
18322593348eSBarry Smith   Mat         outA;
1833de6a44a3SBarry Smith   int         ierr;
18342593348eSBarry Smith 
1835e3372554SBarry Smith   if (fill != 0) SETERRQ(1,0,"Only fill=0 supported");
18362593348eSBarry Smith 
18372593348eSBarry Smith   outA          = inA;
18382593348eSBarry Smith   inA->factor   = FACTOR_LU;
18392593348eSBarry Smith   a->row        = row;
18402593348eSBarry Smith   a->col        = col;
18412593348eSBarry Smith 
1842de6a44a3SBarry Smith   a->solve_work = (Scalar *) PetscMalloc((a->m+a->bs)*sizeof(Scalar));CHKPTRQ(a->solve_work);
18432593348eSBarry Smith 
18442593348eSBarry Smith   if (!a->diag) {
1845b6490206SBarry Smith     ierr = MatMarkDiag_SeqBAIJ(inA); CHKERRQ(ierr);
18462593348eSBarry Smith   }
18477fc0212eSBarry Smith   ierr = MatLUFactorNumeric(inA,&outA); CHKERRQ(ierr);
18482593348eSBarry Smith   return 0;
18492593348eSBarry Smith }
18502593348eSBarry Smith 
18515615d1e5SSatish Balay #undef __FUNC__
18525615d1e5SSatish Balay #define __FUNC__ "MatScale_SeqBAIJ"
18538f6be9afSLois Curfman McInnes int MatScale_SeqBAIJ(Scalar *alpha,Mat inA)
18542593348eSBarry Smith {
1855b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
18569df24120SSatish Balay   int         one = 1, totalnz = a->bs2*a->nz;
1857b6490206SBarry Smith   BLscal_( &totalnz, alpha, a->a, &one );
1858b6490206SBarry Smith   PLogFlops(totalnz);
18592593348eSBarry Smith   return 0;
18602593348eSBarry Smith }
18612593348eSBarry Smith 
18625615d1e5SSatish Balay #undef __FUNC__
18635615d1e5SSatish Balay #define __FUNC__ "MatGetValues_SeqBAIJ"
18648f6be9afSLois Curfman McInnes int MatGetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v)
18657e67e3f9SSatish Balay {
18667e67e3f9SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
18677e67e3f9SSatish Balay   int        *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j;
1868a7c10996SSatish Balay   int        *ai = a->i, *ailen = a->ilen;
18699df24120SSatish Balay   int        brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2;
18707e67e3f9SSatish Balay   Scalar     *ap, *aa = a->a, zero = 0.0;
18717e67e3f9SSatish Balay 
18727e67e3f9SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over rows */
18737e67e3f9SSatish Balay     row  = im[k]; brow = row/bs;
1874e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
1875e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
1876a7c10996SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
18777e67e3f9SSatish Balay     nrow = ailen[brow];
18787e67e3f9SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over columns */
1879e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
1880e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
1881a7c10996SSatish Balay       col  = in[l] ;
18827e67e3f9SSatish Balay       bcol = col/bs;
18837e67e3f9SSatish Balay       cidx = col%bs;
18847e67e3f9SSatish Balay       ridx = row%bs;
18857e67e3f9SSatish Balay       high = nrow;
18867e67e3f9SSatish Balay       low  = 0; /* assume unsorted */
18877e67e3f9SSatish Balay       while (high-low > 5) {
18887e67e3f9SSatish Balay         t = (low+high)/2;
18897e67e3f9SSatish Balay         if (rp[t] > bcol) high = t;
18907e67e3f9SSatish Balay         else             low  = t;
18917e67e3f9SSatish Balay       }
18927e67e3f9SSatish Balay       for ( i=low; i<high; i++ ) {
18937e67e3f9SSatish Balay         if (rp[i] > bcol) break;
18947e67e3f9SSatish Balay         if (rp[i] == bcol) {
18957e67e3f9SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
18967e67e3f9SSatish Balay           goto finished;
18977e67e3f9SSatish Balay         }
18987e67e3f9SSatish Balay       }
18997e67e3f9SSatish Balay       *v++ = zero;
19007e67e3f9SSatish Balay       finished:;
19017e67e3f9SSatish Balay     }
19027e67e3f9SSatish Balay   }
19037e67e3f9SSatish Balay   return 0;
19047e67e3f9SSatish Balay }
19057e67e3f9SSatish Balay 
19065615d1e5SSatish Balay #undef __FUNC__
19075eea60f9SBarry Smith #define __FUNC__ "MatGetBlockSize_SeqBAIJ" /* ADIC Ignore */
19088f6be9afSLois Curfman McInnes int MatGetBlockSize_SeqBAIJ(Mat mat, int *bs)
19095a838052SSatish Balay {
19105a838052SSatish Balay   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *) mat->data;
19115a838052SSatish Balay   *bs = baij->bs;
19125a838052SSatish Balay   return 0;
19135a838052SSatish Balay }
19145a838052SSatish Balay 
1915d9b7c43dSSatish Balay /* idx should be of length atlease bs */
19165615d1e5SSatish Balay #undef __FUNC__
19175615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ_Check_Block"
1918d9b7c43dSSatish Balay static int MatZeroRows_SeqBAIJ_Check_Block(int *idx, int bs, PetscTruth *flg)
1919d9b7c43dSSatish Balay {
1920d9b7c43dSSatish Balay   int i,row;
1921d9b7c43dSSatish Balay   row = idx[0];
1922d9b7c43dSSatish Balay   if (row%bs!=0) { *flg = PETSC_FALSE; return 0; }
1923d9b7c43dSSatish Balay 
1924d9b7c43dSSatish Balay   for ( i=1; i<bs; i++ ) {
1925d9b7c43dSSatish Balay     if (row+i != idx[i]) { *flg = PETSC_FALSE; return 0; }
1926d9b7c43dSSatish Balay   }
1927d9b7c43dSSatish Balay   *flg = PETSC_TRUE;
1928d9b7c43dSSatish Balay   return 0;
1929d9b7c43dSSatish Balay }
1930d9b7c43dSSatish Balay 
19315615d1e5SSatish Balay #undef __FUNC__
19325615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ"
19338f6be9afSLois Curfman McInnes int MatZeroRows_SeqBAIJ(Mat A,IS is, Scalar *diag)
1934d9b7c43dSSatish Balay {
1935d9b7c43dSSatish Balay   Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data;
1936d9b7c43dSSatish Balay   IS          is_local;
1937d9b7c43dSSatish Balay   int         ierr,i,j,count,m=baij->m,is_n,*is_idx,*rows,bs=baij->bs,bs2=baij->bs2;
1938d9b7c43dSSatish Balay   PetscTruth  flg;
1939d9b7c43dSSatish Balay   Scalar      zero = 0.0,*aa;
1940d9b7c43dSSatish Balay 
1941d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
1942d9b7c43dSSatish Balay   ierr = ISGetSize(is,&is_n);CHKERRQ(ierr);
1943d9b7c43dSSatish Balay   ierr = ISGetIndices(is,&is_idx);CHKERRQ(ierr);
1944537820f0SBarry Smith   ierr = ISCreateGeneral(A->comm,is_n,is_idx,&is_local); CHKERRQ(ierr);
1945d9b7c43dSSatish Balay   ierr = ISSort(is_local); CHKERRQ(ierr);
1946d9b7c43dSSatish Balay   ierr = ISGetIndices(is_local,&rows); CHKERRQ(ierr);
1947d9b7c43dSSatish Balay 
1948d9b7c43dSSatish Balay   i = 0;
1949d9b7c43dSSatish Balay   while (i < is_n) {
1950e3372554SBarry Smith     if (rows[i]<0 || rows[i]>m) SETERRQ(1,0,"row out of range");
1951d9b7c43dSSatish Balay     flg = PETSC_FALSE;
1952d9b7c43dSSatish Balay     if (i+bs <= is_n) {ierr = MatZeroRows_SeqBAIJ_Check_Block(rows+i,bs,&flg); CHKERRQ(ierr); }
1953d9b7c43dSSatish Balay     if (flg) { /* There exists a block of rows to be Zerowed */
1954d9b7c43dSSatish Balay       baij->ilen[rows[i]/bs] = 0;
1955d9b7c43dSSatish Balay       i += bs;
1956d9b7c43dSSatish Balay     } else { /* Zero out only the requested row */
1957d9b7c43dSSatish Balay       count = (baij->i[rows[i]/bs +1] - baij->i[rows[i]/bs])*bs;
1958d9b7c43dSSatish Balay       aa    = baij->a + baij->i[rows[i]/bs]*bs2 + (rows[i]%bs);
1959d9b7c43dSSatish Balay       for ( j=0; j<count; j++ ) {
1960d9b7c43dSSatish Balay         aa[0] = zero;
1961d9b7c43dSSatish Balay         aa+=bs;
1962d9b7c43dSSatish Balay       }
1963d9b7c43dSSatish Balay       i++;
1964d9b7c43dSSatish Balay     }
1965d9b7c43dSSatish Balay   }
1966d9b7c43dSSatish Balay   if (diag) {
1967d9b7c43dSSatish Balay     for ( j=0; j<is_n; j++ ) {
1968d9b7c43dSSatish Balay       ierr = (*A->ops.setvalues)(A,1,rows+j,1,rows+j,diag,INSERT_VALUES);CHKERRQ(ierr);
1969d9b7c43dSSatish Balay     }
1970d9b7c43dSSatish Balay   }
1971d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is,&is_idx); CHKERRQ(ierr);
1972d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is_local,&rows); CHKERRQ(ierr);
1973d9b7c43dSSatish Balay   ierr = ISDestroy(is_local); CHKERRQ(ierr);
19749a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1975d9b7c43dSSatish Balay 
1976d9b7c43dSSatish Balay   return 0;
1977d9b7c43dSSatish Balay }
19781c351548SSatish Balay 
19795615d1e5SSatish Balay #undef __FUNC__
19805eea60f9SBarry Smith #define __FUNC__ "MatPrintHelp_SeqBAIJ" /* ADIC Ignore */
1981ba4ca20aSSatish Balay int MatPrintHelp_SeqBAIJ(Mat A)
1982ba4ca20aSSatish Balay {
1983ba4ca20aSSatish Balay   static int called = 0;
1984ba4ca20aSSatish Balay   MPI_Comm   comm = A->comm;
1985ba4ca20aSSatish Balay 
1986ba4ca20aSSatish Balay   if (called) return 0; else called = 1;
1987ba4ca20aSSatish Balay   PetscPrintf(comm," Options for MATSEQBAIJ and MATMPIBAIJ matrix formats (the defaults):\n");
1988ba4ca20aSSatish Balay   PetscPrintf(comm,"  -mat_block_size <block_size>\n");
1989ba4ca20aSSatish Balay   return 0;
1990ba4ca20aSSatish Balay }
1991d9b7c43dSSatish Balay 
19922593348eSBarry Smith /* -------------------------------------------------------------------*/
1993cd0e1443SSatish Balay static struct _MatOps MatOps = {MatSetValues_SeqBAIJ,
19949867e207SSatish Balay        MatGetRow_SeqBAIJ,MatRestoreRow_SeqBAIJ,
1995f44d3a6dSSatish Balay        MatMult_SeqBAIJ_N,MatMultAdd_SeqBAIJ_N,
1996faf6580fSSatish Balay        MatMultTrans_SeqBAIJ,MatMultTransAdd_SeqBAIJ,
19971a6a6d98SBarry Smith        MatSolve_SeqBAIJ_N,0,
1998b6490206SBarry Smith        0,0,
1999de6a44a3SBarry Smith        MatLUFactor_SeqBAIJ,0,
2000b6490206SBarry Smith        0,
2001f2501298SSatish Balay        MatTranspose_SeqBAIJ,
200217e48fc4SSatish Balay        MatGetInfo_SeqBAIJ,MatEqual_SeqBAIJ,
20039867e207SSatish Balay        MatGetDiagonal_SeqBAIJ,MatDiagonalScale_SeqBAIJ,MatNorm_SeqBAIJ,
2004584200bdSSatish Balay        0,MatAssemblyEnd_SeqBAIJ,
2005b6490206SBarry Smith        0,
2006d9b7c43dSSatish Balay        MatSetOption_SeqBAIJ,MatZeroEntries_SeqBAIJ,MatZeroRows_SeqBAIJ,
20077fc0212eSBarry Smith        MatLUFactorSymbolic_SeqBAIJ,MatLUFactorNumeric_SeqBAIJ_N,0,0,
2008b6490206SBarry Smith        MatGetSize_SeqBAIJ,MatGetSize_SeqBAIJ,MatGetOwnershipRange_SeqBAIJ,
2009de6a44a3SBarry Smith        MatILUFactorSymbolic_SeqBAIJ,0,
2010d402145bSBarry Smith        0,0,
2011b6490206SBarry Smith        MatConvertSameType_SeqBAIJ,0,0,
2012b6490206SBarry Smith        MatILUFactor_SeqBAIJ,0,0,
2013af015674SSatish Balay        MatGetSubMatrices_SeqBAIJ,MatIncreaseOverlap_SeqBAIJ,
20147e67e3f9SSatish Balay        MatGetValues_SeqBAIJ,0,
2015ba4ca20aSSatish Balay        MatPrintHelp_SeqBAIJ,MatScale_SeqBAIJ,
20163b2fbd54SBarry Smith        0,0,0,MatGetBlockSize_SeqBAIJ,
20173b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
201892c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
201992c4ed94SBarry Smith        0,0,0,0,0,0,
202092c4ed94SBarry Smith        MatSetValuesBlocked_SeqBAIJ};
20212593348eSBarry Smith 
20225615d1e5SSatish Balay #undef __FUNC__
20235615d1e5SSatish Balay #define __FUNC__ "MatCreateSeqBAIJ"
20242593348eSBarry Smith /*@C
202544cd7ae7SLois Curfman McInnes    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
202644cd7ae7SLois Curfman McInnes    compressed row) format.  For good matrix assembly performance the
202744cd7ae7SLois Curfman McInnes    user should preallocate the matrix storage by setting the parameter nz
20282bd5e0b2SLois Curfman McInnes    (or the array nzz).  By setting these parameters accurately, performance
20292bd5e0b2SLois Curfman McInnes    during matrix assembly can be increased by more than a factor of 50.
20302593348eSBarry Smith 
20312593348eSBarry Smith    Input Parameters:
2032029af93fSBarry Smith .  comm - MPI communicator, set to PETSC_COMM_SELF
2033b6490206SBarry Smith .  bs - size of block
20342593348eSBarry Smith .  m - number of rows
20352593348eSBarry Smith .  n - number of columns
2036b6490206SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
20372bd5e0b2SLois Curfman McInnes .  nzz - array containing the number of block nonzeros in the various block rows
20382bd5e0b2SLois Curfman McInnes          (possibly different for each block row) or PETSC_NULL
20392593348eSBarry Smith 
20402593348eSBarry Smith    Output Parameter:
20412593348eSBarry Smith .  A - the matrix
20422593348eSBarry Smith 
20430513a670SBarry Smith    Options Database Keys:
20440513a670SBarry Smith $    -mat_no_unroll - uses code that does not unroll the loops in the
20450513a670SBarry Smith $                     block calculations (much solver)
20460513a670SBarry Smith $    -mat_block_size - size of the blocks to use
20470513a670SBarry Smith 
20482593348eSBarry Smith    Notes:
204944cd7ae7SLois Curfman McInnes    The block AIJ format is fully compatible with standard Fortran 77
20502593348eSBarry Smith    storage.  That is, the stored row and column indices can begin at
205144cd7ae7SLois Curfman McInnes    either one (as in Fortran) or zero.  See the users' manual for details.
20522593348eSBarry Smith 
20532593348eSBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
20542593348eSBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
20552593348eSBarry Smith    allocation.  For additional details, see the users manual chapter on
20566da5968aSLois Curfman McInnes    matrices.
20572593348eSBarry Smith 
205844cd7ae7SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
20592593348eSBarry Smith @*/
2060b6490206SBarry Smith int MatCreateSeqBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,int *nnz, Mat *A)
20612593348eSBarry Smith {
20622593348eSBarry Smith   Mat         B;
2063b6490206SBarry Smith   Mat_SeqBAIJ *b;
20643b2fbd54SBarry Smith   int         i,len,ierr,flg,mbs=m/bs,nbs=n/bs,bs2=bs*bs,size;
20653b2fbd54SBarry Smith 
20663b2fbd54SBarry Smith   MPI_Comm_size(comm,&size);
2067e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"Comm must be of size 1");
2068b6490206SBarry Smith 
20690513a670SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,&flg);CHKERRQ(ierr);
20700513a670SBarry Smith 
2071f2501298SSatish Balay   if (mbs*bs!=m || nbs*bs!=n)
2072e3372554SBarry Smith     SETERRQ(1,0,"Number rows, cols must be divisible by blocksize");
20732593348eSBarry Smith 
20742593348eSBarry Smith   *A = 0;
2075b6490206SBarry Smith   PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATSEQBAIJ,comm);
20762593348eSBarry Smith   PLogObjectCreate(B);
2077b6490206SBarry Smith   B->data = (void *) (b = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(b);
207844cd7ae7SLois Curfman McInnes   PetscMemzero(b,sizeof(Mat_SeqBAIJ));
20792593348eSBarry Smith   PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps));
20801a6a6d98SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_no_unroll",&flg); CHKERRQ(ierr);
20811a6a6d98SBarry Smith   if (!flg) {
20827fc0212eSBarry Smith     switch (bs) {
20837fc0212eSBarry Smith     case 1:
20847fc0212eSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1;
20851a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_1;
208639b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_1;
2087f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_1;
20887fc0212eSBarry Smith       break;
20894eeb42bcSBarry Smith     case 2:
20904eeb42bcSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2;
20911a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_2;
209239b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_2;
2093f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_2;
20946d84be18SBarry Smith       break;
2095f327dd97SBarry Smith     case 3:
2096f327dd97SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3;
20971a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_3;
209839b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_3;
2099f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_3;
21004eeb42bcSBarry Smith       break;
21016d84be18SBarry Smith     case 4:
21026d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4;
21031a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_4;
210439b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_4;
2105f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_4;
21066d84be18SBarry Smith       break;
21076d84be18SBarry Smith     case 5:
21086d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5;
21091a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_5;
211039b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_5;
2111f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_5;
21126d84be18SBarry Smith       break;
211348e9ddb2SSatish Balay     case 7:
211448e9ddb2SSatish Balay       B->ops.mult            = MatMult_SeqBAIJ_7;
211548e9ddb2SSatish Balay       B->ops.solve           = MatSolve_SeqBAIJ_7;
211648e9ddb2SSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_7;
211748e9ddb2SSatish Balay       break;
21187fc0212eSBarry Smith     }
21191a6a6d98SBarry Smith   }
2120b6490206SBarry Smith   B->destroy          = MatDestroy_SeqBAIJ;
2121b6490206SBarry Smith   B->view             = MatView_SeqBAIJ;
21222593348eSBarry Smith   B->factor           = 0;
21232593348eSBarry Smith   B->lupivotthreshold = 1.0;
212490f02eecSBarry Smith   B->mapping          = 0;
21252593348eSBarry Smith   b->row              = 0;
21262593348eSBarry Smith   b->col              = 0;
21272593348eSBarry Smith   b->reallocs         = 0;
21282593348eSBarry Smith 
212944cd7ae7SLois Curfman McInnes   b->m       = m; B->m = m; B->M = m;
213044cd7ae7SLois Curfman McInnes   b->n       = n; B->n = n; B->N = n;
2131b6490206SBarry Smith   b->mbs     = mbs;
2132f2501298SSatish Balay   b->nbs     = nbs;
2133b6490206SBarry Smith   b->imax    = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(b->imax);
21342593348eSBarry Smith   if (nnz == PETSC_NULL) {
2135119a934aSSatish Balay     if (nz == PETSC_DEFAULT) nz = 5;
21362593348eSBarry Smith     else if (nz <= 0)        nz = 1;
2137b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) b->imax[i] = nz;
2138b6490206SBarry Smith     nz = nz*mbs;
21392593348eSBarry Smith   }
21402593348eSBarry Smith   else {
21412593348eSBarry Smith     nz = 0;
2142b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {b->imax[i] = nnz[i]; nz += nnz[i];}
21432593348eSBarry Smith   }
21442593348eSBarry Smith 
21452593348eSBarry Smith   /* allocate the matrix space */
21467e67e3f9SSatish Balay   len   = nz*sizeof(int) + nz*bs2*sizeof(Scalar) + (b->m+1)*sizeof(int);
21472593348eSBarry Smith   b->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(b->a);
21487e67e3f9SSatish Balay   PetscMemzero(b->a,nz*bs2*sizeof(Scalar));
21497e67e3f9SSatish Balay   b->j  = (int *) (b->a + nz*bs2);
21502593348eSBarry Smith   PetscMemzero(b->j,nz*sizeof(int));
21512593348eSBarry Smith   b->i  = b->j + nz;
21522593348eSBarry Smith   b->singlemalloc = 1;
21532593348eSBarry Smith 
2154de6a44a3SBarry Smith   b->i[0] = 0;
2155b6490206SBarry Smith   for (i=1; i<mbs+1; i++) {
21562593348eSBarry Smith     b->i[i] = b->i[i-1] + b->imax[i-1];
21572593348eSBarry Smith   }
21582593348eSBarry Smith 
2159b6490206SBarry Smith   /* b->ilen will count nonzeros in each block row so far. */
2160b6490206SBarry Smith   b->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int));
2161b6490206SBarry Smith   PLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_SeqBAIJ));
2162b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) { b->ilen[i] = 0;}
21632593348eSBarry Smith 
2164b6490206SBarry Smith   b->bs               = bs;
21659df24120SSatish Balay   b->bs2              = bs2;
2166b6490206SBarry Smith   b->mbs              = mbs;
21672593348eSBarry Smith   b->nz               = 0;
216818e7b8e4SLois Curfman McInnes   b->maxnz            = nz*bs2;
21692593348eSBarry Smith   b->sorted           = 0;
21702593348eSBarry Smith   b->roworiented      = 1;
21712593348eSBarry Smith   b->nonew            = 0;
21722593348eSBarry Smith   b->diag             = 0;
21732593348eSBarry Smith   b->solve_work       = 0;
2174de6a44a3SBarry Smith   b->mult_work        = 0;
21752593348eSBarry Smith   b->spptr            = 0;
21764e220ebcSLois Curfman McInnes   B->info.nz_unneeded = (double)b->maxnz;
21774e220ebcSLois Curfman McInnes 
21782593348eSBarry Smith   *A = B;
21792593348eSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help", &flg); CHKERRQ(ierr);
21802593348eSBarry Smith   if (flg) {ierr = MatPrintHelp(B); CHKERRQ(ierr); }
21812593348eSBarry Smith   return 0;
21822593348eSBarry Smith }
21832593348eSBarry Smith 
21845615d1e5SSatish Balay #undef __FUNC__
21855615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_SeqBAIJ"
2186b6490206SBarry Smith int MatConvertSameType_SeqBAIJ(Mat A,Mat *B,int cpvalues)
21872593348eSBarry Smith {
21882593348eSBarry Smith   Mat         C;
2189b6490206SBarry Smith   Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ *) A->data;
21909df24120SSatish Balay   int         i,len, mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
2191de6a44a3SBarry Smith 
2192e3372554SBarry Smith   if (a->i[mbs] != nz) SETERRQ(1,0,"Corrupt matrix");
21932593348eSBarry Smith 
21942593348eSBarry Smith   *B = 0;
2195b6490206SBarry Smith   PetscHeaderCreate(C,_Mat,MAT_COOKIE,MATSEQBAIJ,A->comm);
21962593348eSBarry Smith   PLogObjectCreate(C);
2197b6490206SBarry Smith   C->data       = (void *) (c = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(c);
21982593348eSBarry Smith   PetscMemcpy(&C->ops,&A->ops,sizeof(struct _MatOps));
2199b6490206SBarry Smith   C->destroy    = MatDestroy_SeqBAIJ;
2200b6490206SBarry Smith   C->view       = MatView_SeqBAIJ;
22012593348eSBarry Smith   C->factor     = A->factor;
22022593348eSBarry Smith   c->row        = 0;
22032593348eSBarry Smith   c->col        = 0;
22042593348eSBarry Smith   C->assembled  = PETSC_TRUE;
22052593348eSBarry Smith 
220644cd7ae7SLois Curfman McInnes   c->m = C->m   = a->m;
220744cd7ae7SLois Curfman McInnes   c->n = C->n   = a->n;
220844cd7ae7SLois Curfman McInnes   C->M          = a->m;
220944cd7ae7SLois Curfman McInnes   C->N          = a->n;
221044cd7ae7SLois Curfman McInnes 
2211b6490206SBarry Smith   c->bs         = a->bs;
22129df24120SSatish Balay   c->bs2        = a->bs2;
2213b6490206SBarry Smith   c->mbs        = a->mbs;
2214b6490206SBarry Smith   c->nbs        = a->nbs;
22152593348eSBarry Smith 
2216b6490206SBarry Smith   c->imax       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->imax);
2217b6490206SBarry Smith   c->ilen       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->ilen);
2218b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
22192593348eSBarry Smith     c->imax[i] = a->imax[i];
22202593348eSBarry Smith     c->ilen[i] = a->ilen[i];
22212593348eSBarry Smith   }
22222593348eSBarry Smith 
22232593348eSBarry Smith   /* allocate the matrix space */
22242593348eSBarry Smith   c->singlemalloc = 1;
22257e67e3f9SSatish Balay   len   = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(Scalar) + sizeof(int));
22262593348eSBarry Smith   c->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(c->a);
22277e67e3f9SSatish Balay   c->j  = (int *) (c->a + nz*bs2);
2228de6a44a3SBarry Smith   c->i  = c->j + nz;
2229b6490206SBarry Smith   PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int));
2230b6490206SBarry Smith   if (mbs > 0) {
2231de6a44a3SBarry Smith     PetscMemcpy(c->j,a->j,nz*sizeof(int));
22322593348eSBarry Smith     if (cpvalues == COPY_VALUES) {
22337e67e3f9SSatish Balay       PetscMemcpy(c->a,a->a,bs2*nz*sizeof(Scalar));
22342593348eSBarry Smith     }
22352593348eSBarry Smith   }
22362593348eSBarry Smith 
2237b6490206SBarry Smith   PLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_SeqBAIJ));
22382593348eSBarry Smith   c->sorted      = a->sorted;
22392593348eSBarry Smith   c->roworiented = a->roworiented;
22402593348eSBarry Smith   c->nonew       = a->nonew;
22412593348eSBarry Smith 
22422593348eSBarry Smith   if (a->diag) {
2243b6490206SBarry Smith     c->diag = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(c->diag);
2244b6490206SBarry Smith     PLogObjectMemory(C,(mbs+1)*sizeof(int));
2245b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {
22462593348eSBarry Smith       c->diag[i] = a->diag[i];
22472593348eSBarry Smith     }
22482593348eSBarry Smith   }
22492593348eSBarry Smith   else c->diag          = 0;
22502593348eSBarry Smith   c->nz                 = a->nz;
22512593348eSBarry Smith   c->maxnz              = a->maxnz;
22522593348eSBarry Smith   c->solve_work         = 0;
22532593348eSBarry Smith   c->spptr              = 0;      /* Dangerous -I'm throwing away a->spptr */
22547fc0212eSBarry Smith   c->mult_work          = 0;
22552593348eSBarry Smith   *B = C;
22562593348eSBarry Smith   return 0;
22572593348eSBarry Smith }
22582593348eSBarry Smith 
22595615d1e5SSatish Balay #undef __FUNC__
22605615d1e5SSatish Balay #define __FUNC__ "MatLoad_SeqBAIJ"
226119bcc07fSBarry Smith int MatLoad_SeqBAIJ(Viewer viewer,MatType type,Mat *A)
22622593348eSBarry Smith {
2263b6490206SBarry Smith   Mat_SeqBAIJ  *a;
22642593348eSBarry Smith   Mat          B;
2265de6a44a3SBarry Smith   int          i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1,flg;
2266b6490206SBarry Smith   int          *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
226735aab85fSBarry Smith   int          kmax,jcount,block,idx,point,nzcountb,extra_rows;
2268a7c10996SSatish Balay   int          *masked, nmask,tmp,bs2,ishift;
2269b6490206SBarry Smith   Scalar       *aa;
227019bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject) viewer)->comm;
22712593348eSBarry Smith 
22721a6a6d98SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
2273de6a44a3SBarry Smith   bs2  = bs*bs;
2274b6490206SBarry Smith 
22752593348eSBarry Smith   MPI_Comm_size(comm,&size);
2276e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"view must have one processor");
227790ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
227877c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,header,4,BINARY_INT); CHKERRQ(ierr);
2279e3372554SBarry Smith   if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not Mat object");
22802593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
22812593348eSBarry Smith 
2282e3372554SBarry Smith   if (M != N) SETERRQ(1,0,"Can only do square matrices");
228335aab85fSBarry Smith 
228435aab85fSBarry Smith   /*
228535aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
228635aab85fSBarry Smith     divisible by the blocksize
228735aab85fSBarry Smith   */
2288b6490206SBarry Smith   mbs        = M/bs;
228935aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
229035aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
229135aab85fSBarry Smith   else                  mbs++;
229235aab85fSBarry Smith   if (extra_rows) {
2293537820f0SBarry Smith     PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize\n");
229435aab85fSBarry Smith   }
2295b6490206SBarry Smith 
22962593348eSBarry Smith   /* read in row lengths */
229735aab85fSBarry Smith   rowlengths = (int*) PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths);
229877c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr);
229935aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
23002593348eSBarry Smith 
2301b6490206SBarry Smith   /* read in column indices */
230235aab85fSBarry Smith   jj = (int*) PetscMalloc( (nz+extra_rows)*sizeof(int) ); CHKPTRQ(jj);
230377c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,BINARY_INT); CHKERRQ(ierr);
230435aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) jj[nz+i] = M+i;
2305b6490206SBarry Smith 
2306b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
2307b6490206SBarry Smith   browlengths = (int *) PetscMalloc(mbs*sizeof(int));CHKPTRQ(browlengths);
2308b6490206SBarry Smith   PetscMemzero(browlengths,mbs*sizeof(int));
230935aab85fSBarry Smith   mask   = (int *) PetscMalloc( 2*mbs*sizeof(int) ); CHKPTRQ(mask);
231035aab85fSBarry Smith   PetscMemzero(mask,mbs*sizeof(int));
231135aab85fSBarry Smith   masked = mask + mbs;
2312b6490206SBarry Smith   rowcount = 0; nzcount = 0;
2313b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
231435aab85fSBarry Smith     nmask = 0;
2315b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2316b6490206SBarry Smith       kmax = rowlengths[rowcount];
2317b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
231835aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
231935aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
2320b6490206SBarry Smith       }
2321b6490206SBarry Smith       rowcount++;
2322b6490206SBarry Smith     }
232335aab85fSBarry Smith     browlengths[i] += nmask;
232435aab85fSBarry Smith     /* zero out the mask elements we set */
232535aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2326b6490206SBarry Smith   }
2327b6490206SBarry Smith 
23282593348eSBarry Smith   /* create our matrix */
232935aab85fSBarry Smith   ierr = MatCreateSeqBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,browlengths,A);
233035aab85fSBarry Smith          CHKERRQ(ierr);
23312593348eSBarry Smith   B = *A;
2332b6490206SBarry Smith   a = (Mat_SeqBAIJ *) B->data;
23332593348eSBarry Smith 
23342593348eSBarry Smith   /* set matrix "i" values */
2335de6a44a3SBarry Smith   a->i[0] = 0;
2336b6490206SBarry Smith   for ( i=1; i<= mbs; i++ ) {
2337b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
2338b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
23392593348eSBarry Smith   }
2340b6490206SBarry Smith   a->nz         = 0;
2341b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) a->nz += browlengths[i];
23422593348eSBarry Smith 
2343b6490206SBarry Smith   /* read in nonzero values */
234435aab85fSBarry Smith   aa = (Scalar *) PetscMalloc((nz+extra_rows)*sizeof(Scalar));CHKPTRQ(aa);
234577c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,BINARY_SCALAR); CHKERRQ(ierr);
234635aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) aa[nz+i] = 1.0;
2347b6490206SBarry Smith 
2348b6490206SBarry Smith   /* set "a" and "j" values into matrix */
2349b6490206SBarry Smith   nzcount = 0; jcount = 0;
2350b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
2351b6490206SBarry Smith     nzcountb = nzcount;
235235aab85fSBarry Smith     nmask    = 0;
2353b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2354b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2355b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
235635aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
235735aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
2358b6490206SBarry Smith       }
2359b6490206SBarry Smith       rowcount++;
2360b6490206SBarry Smith     }
2361de6a44a3SBarry Smith     /* sort the masked values */
236277c4ece6SBarry Smith     PetscSortInt(nmask,masked);
2363de6a44a3SBarry Smith 
2364b6490206SBarry Smith     /* set "j" values into matrix */
2365b6490206SBarry Smith     maskcount = 1;
236635aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) {
236735aab85fSBarry Smith       a->j[jcount++]  = masked[j];
2368de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
2369b6490206SBarry Smith     }
2370b6490206SBarry Smith     /* set "a" values into matrix */
2371de6a44a3SBarry Smith     ishift = bs2*a->i[i];
2372b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2373b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2374b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
2375de6a44a3SBarry Smith         tmp    = jj[nzcountb]/bs ;
2376de6a44a3SBarry Smith         block  = mask[tmp] - 1;
2377de6a44a3SBarry Smith         point  = jj[nzcountb] - bs*tmp;
2378de6a44a3SBarry Smith         idx    = ishift + bs2*block + j + bs*point;
2379b6490206SBarry Smith         a->a[idx] = aa[nzcountb++];
2380b6490206SBarry Smith       }
2381b6490206SBarry Smith     }
238235aab85fSBarry Smith     /* zero out the mask elements we set */
238335aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2384b6490206SBarry Smith   }
2385e3372554SBarry Smith   if (jcount != a->nz) SETERRQ(1,0,"Error bad binary matrix");
2386b6490206SBarry Smith 
2387b6490206SBarry Smith   PetscFree(rowlengths);
2388b6490206SBarry Smith   PetscFree(browlengths);
2389b6490206SBarry Smith   PetscFree(aa);
2390b6490206SBarry Smith   PetscFree(jj);
2391b6490206SBarry Smith   PetscFree(mask);
2392b6490206SBarry Smith 
2393b6490206SBarry Smith   B->assembled = PETSC_TRUE;
2394de6a44a3SBarry Smith 
2395de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_info",&flg); CHKERRQ(ierr);
2396de6a44a3SBarry Smith   if (flg) {
239719bcc07fSBarry Smith     Viewer tviewer;
239819bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2399639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO,0);CHKERRQ(ierr);
240019bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
240119bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2402de6a44a3SBarry Smith   }
2403de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_info_detailed",&flg);CHKERRQ(ierr);
2404de6a44a3SBarry Smith   if (flg) {
240519bcc07fSBarry Smith     Viewer tviewer;
240619bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2407639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO_LONG,0);CHKERRQ(ierr);
240819bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
240919bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2410de6a44a3SBarry Smith   }
2411de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view",&flg); CHKERRQ(ierr);
2412de6a44a3SBarry Smith   if (flg) {
241319bcc07fSBarry Smith     Viewer tviewer;
241419bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
241519bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
241619bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2417de6a44a3SBarry Smith   }
2418de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_matlab",&flg); CHKERRQ(ierr);
2419de6a44a3SBarry Smith   if (flg) {
242019bcc07fSBarry Smith     Viewer tviewer;
242119bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2422639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_MATLAB,"M");CHKERRQ(ierr);
242319bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
242419bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2425de6a44a3SBarry Smith   }
2426de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_draw",&flg); CHKERRQ(ierr);
2427de6a44a3SBarry Smith   if (flg) {
242819bcc07fSBarry Smith     Viewer tviewer;
242919bcc07fSBarry Smith     ierr = ViewerDrawOpenX(B->comm,0,0,0,0,300,300,&tviewer); CHKERRQ(ierr);
243019bcc07fSBarry Smith     ierr = MatView(B,(Viewer)tviewer); CHKERRQ(ierr);
243119bcc07fSBarry Smith     ierr = ViewerFlush(tviewer); CHKERRQ(ierr);
243219bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2433de6a44a3SBarry Smith   }
24342593348eSBarry Smith   return 0;
24352593348eSBarry Smith }
24362593348eSBarry Smith 
24372593348eSBarry Smith 
24382593348eSBarry Smith 
2439