xref: /petsc/src/mat/impls/baij/seq/baij.c (revision 9f196a0264fbaf0568fead3a30c861c7ae4cf663)
12593348eSBarry Smith /*
2b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
32593348eSBarry Smith   matrix storage format.
42593348eSBarry Smith */
5c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I   "petscmat.h"  I*/
6c6db04a5SJed Brown #include <petscblaslapack.h>
7af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h>
8af0996ceSBarry Smith #include <petsc/private/kernels/blockmatmult.h>
943516a2dSKris Buschelman 
1026cec326SBarry Smith /* defines MatSetValues_Seq_Hash(), MatAssemblyEnd_Seq_Hash(), MatSetUp_Seq_Hash() */
1126cec326SBarry Smith #define TYPE BAIJ
1226cec326SBarry Smith #define TYPE_BS
1326cec326SBarry Smith #include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h"
1426cec326SBarry Smith #undef TYPE_BS
1526cec326SBarry Smith #define TYPE_BS _BS
1626cec326SBarry Smith #define TYPE_BS_ON
1726cec326SBarry Smith #include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h"
1826cec326SBarry Smith #undef TYPE_BS
1926cec326SBarry Smith #include "../src/mat/impls/aij/seq/seqhashmat.h"
2026cec326SBarry Smith #undef TYPE
2126cec326SBarry Smith #undef TYPE_BS_ON
2226cec326SBarry Smith 
237ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
247ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
257ea3e4caSstefano_zampini #endif
267ea3e4caSstefano_zampini 
27b5b72c8aSIrina Sokolova #if defined(PETSC_HAVE_MKL_SPARSE_OPTIMIZE)
28fd9d3c67SJed Brown PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBAIJMKL(Mat, MatType, MatReuse, Mat *);
29b5b72c8aSIrina Sokolova #endif
30c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
31b5b72c8aSIrina Sokolova 
32ff6a9541SJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_SeqBAIJ(Mat A, PetscInt type, PetscReal *reductions)
33d71ae5a4SJacob Faibussowitsch {
349463ebdaSPierre Jolivet   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)A->data;
35ff6a9541SJacob Faibussowitsch   PetscInt     m, n, ib, jb, bs = A->rmap->bs;
369463ebdaSPierre Jolivet   MatScalar   *a_val = a_aij->a;
379463ebdaSPierre Jolivet 
389463ebdaSPierre Jolivet   PetscFunctionBegin;
399566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
40ff6a9541SJacob Faibussowitsch   PetscCall(PetscArrayzero(reductions, n));
419463ebdaSPierre Jolivet   if (type == NORM_2) {
42ff6a9541SJacob Faibussowitsch     for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) {
439463ebdaSPierre Jolivet       for (jb = 0; jb < bs; jb++) {
449463ebdaSPierre Jolivet         for (ib = 0; ib < bs; ib++) {
45857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
469463ebdaSPierre Jolivet           a_val++;
479463ebdaSPierre Jolivet         }
489463ebdaSPierre Jolivet       }
499463ebdaSPierre Jolivet     }
509463ebdaSPierre Jolivet   } else if (type == NORM_1) {
51ff6a9541SJacob Faibussowitsch     for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) {
529463ebdaSPierre Jolivet       for (jb = 0; jb < bs; jb++) {
539463ebdaSPierre Jolivet         for (ib = 0; ib < bs; ib++) {
54857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
559463ebdaSPierre Jolivet           a_val++;
569463ebdaSPierre Jolivet         }
579463ebdaSPierre Jolivet       }
589463ebdaSPierre Jolivet     }
599463ebdaSPierre Jolivet   } else if (type == NORM_INFINITY) {
60ff6a9541SJacob Faibussowitsch     for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) {
619463ebdaSPierre Jolivet       for (jb = 0; jb < bs; jb++) {
629463ebdaSPierre Jolivet         for (ib = 0; ib < bs; ib++) {
636497c311SBarry Smith           PetscInt col    = A->cmap->rstart + a_aij->j[i] * bs + jb;
64857cbf51SRichard Tran Mills           reductions[col] = PetscMax(PetscAbsScalar(*a_val), reductions[col]);
659463ebdaSPierre Jolivet           a_val++;
669463ebdaSPierre Jolivet         }
679463ebdaSPierre Jolivet       }
689463ebdaSPierre Jolivet     }
69857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
70ff6a9541SJacob Faibussowitsch     for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) {
71857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
72857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
73857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
74857cbf51SRichard Tran Mills           a_val++;
75857cbf51SRichard Tran Mills         }
76857cbf51SRichard Tran Mills       }
77857cbf51SRichard Tran Mills     }
78857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
79ff6a9541SJacob Faibussowitsch     for (PetscInt i = a_aij->i[0]; i < a_aij->i[A->rmap->n / bs]; i++) {
80857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
81857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
82857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
83857cbf51SRichard Tran Mills           a_val++;
84857cbf51SRichard Tran Mills         }
85857cbf51SRichard Tran Mills       }
86857cbf51SRichard Tran Mills     }
87857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
889463ebdaSPierre Jolivet   if (type == NORM_2) {
89ff6a9541SJacob Faibussowitsch     for (PetscInt i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
90857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
91ff6a9541SJacob Faibussowitsch     for (PetscInt i = 0; i < n; i++) reductions[i] /= m;
929463ebdaSPierre Jolivet   }
933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
949463ebdaSPierre Jolivet }
959463ebdaSPierre Jolivet 
9666976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_SeqBAIJ(Mat A, const PetscScalar **values)
97d71ae5a4SJacob Faibussowitsch {
98b01c7715SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
99de80f912SBarry Smith   PetscInt    *diag_offset, i, bs = A->rmap->bs, mbs = a->mbs, ipvt[5], bs2 = bs * bs, *v_pivots;
1007f0c90edSBarry Smith   MatScalar   *v     = a->a, *odiag, *diag, work[25], *v_work;
10162bba022SBarry Smith   PetscReal    shift = 0.0;
1021a9391e3SHong Zhang   PetscBool    allowzeropivot, zeropivotdetected = PETSC_FALSE;
103b01c7715SBarry Smith 
104b01c7715SBarry Smith   PetscFunctionBegin;
105a455e926SHong Zhang   allowzeropivot = PetscNot(A->erroriffailure);
106a455e926SHong Zhang 
1079797317bSBarry Smith   if (a->idiagvalid) {
1089797317bSBarry Smith     if (values) *values = a->idiag;
1093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1109797317bSBarry Smith   }
1119566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqBAIJ(A));
112b01c7715SBarry Smith   diag_offset = a->diag;
1134dfa11a4SJacob Faibussowitsch   if (!a->idiag) { PetscCall(PetscMalloc1(bs2 * mbs, &a->idiag)); }
114b01c7715SBarry Smith   diag = a->idiag;
115bbead8a2SBarry Smith   if (values) *values = a->idiag;
116b01c7715SBarry Smith   /* factor and invert each block */
117521d7252SBarry Smith   switch (bs) {
118ab040260SJed Brown   case 1:
119ab040260SJed Brown     for (i = 0; i < mbs; i++) {
120ab040260SJed Brown       odiag   = v + 1 * diag_offset[i];
121ab040260SJed Brown       diag[0] = odiag[0];
122ec1892c8SHong Zhang 
123ec1892c8SHong Zhang       if (PetscAbsScalar(diag[0] + shift) < PETSC_MACHINE_EPSILON) {
124ec1892c8SHong Zhang         if (allowzeropivot) {
1257b6c816cSBarry Smith           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
1267b6c816cSBarry Smith           A->factorerror_zeropivot_value = PetscAbsScalar(diag[0]);
1277b6c816cSBarry Smith           A->factorerror_zeropivot_row   = i;
1289566063dSJacob Faibussowitsch           PetscCall(PetscInfo(A, "Zero pivot, row %" PetscInt_FMT "\n", i));
12998921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_MAT_LU_ZRPVT, "Zero pivot, row %" PetscInt_FMT " pivot value %g tolerance %g", i, (double)PetscAbsScalar(diag[0]), (double)PETSC_MACHINE_EPSILON);
130ec1892c8SHong Zhang       }
131ec1892c8SHong Zhang 
132d4a378daSJed Brown       diag[0] = (PetscScalar)1.0 / (diag[0] + shift);
133ab040260SJed Brown       diag += 1;
134ab040260SJed Brown     }
135ab040260SJed Brown     break;
136b01c7715SBarry Smith   case 2:
137b01c7715SBarry Smith     for (i = 0; i < mbs; i++) {
138b01c7715SBarry Smith       odiag   = v + 4 * diag_offset[i];
1399371c9d4SSatish Balay       diag[0] = odiag[0];
1409371c9d4SSatish Balay       diag[1] = odiag[1];
1419371c9d4SSatish Balay       diag[2] = odiag[2];
1429371c9d4SSatish Balay       diag[3] = odiag[3];
1439566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_2(diag, shift, allowzeropivot, &zeropivotdetected));
1447b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
145b01c7715SBarry Smith       diag += 4;
146b01c7715SBarry Smith     }
147b01c7715SBarry Smith     break;
148b01c7715SBarry Smith   case 3:
149b01c7715SBarry Smith     for (i = 0; i < mbs; i++) {
150b01c7715SBarry Smith       odiag   = v + 9 * diag_offset[i];
1519371c9d4SSatish Balay       diag[0] = odiag[0];
1529371c9d4SSatish Balay       diag[1] = odiag[1];
1539371c9d4SSatish Balay       diag[2] = odiag[2];
1549371c9d4SSatish Balay       diag[3] = odiag[3];
1559371c9d4SSatish Balay       diag[4] = odiag[4];
1569371c9d4SSatish Balay       diag[5] = odiag[5];
1579371c9d4SSatish Balay       diag[6] = odiag[6];
1589371c9d4SSatish Balay       diag[7] = odiag[7];
159b01c7715SBarry Smith       diag[8] = odiag[8];
1609566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_3(diag, shift, allowzeropivot, &zeropivotdetected));
1617b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
162b01c7715SBarry Smith       diag += 9;
163b01c7715SBarry Smith     }
164b01c7715SBarry Smith     break;
165b01c7715SBarry Smith   case 4:
166b01c7715SBarry Smith     for (i = 0; i < mbs; i++) {
167b01c7715SBarry Smith       odiag = v + 16 * diag_offset[i];
1689566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag, odiag, 16));
1699566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_4(diag, shift, allowzeropivot, &zeropivotdetected));
1707b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
171b01c7715SBarry Smith       diag += 16;
172b01c7715SBarry Smith     }
173b01c7715SBarry Smith     break;
174b01c7715SBarry Smith   case 5:
175b01c7715SBarry Smith     for (i = 0; i < mbs; i++) {
176b01c7715SBarry Smith       odiag = v + 25 * diag_offset[i];
1779566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag, odiag, 25));
1789566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_5(diag, ipvt, work, shift, allowzeropivot, &zeropivotdetected));
1797b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
180b01c7715SBarry Smith       diag += 25;
181b01c7715SBarry Smith     }
182b01c7715SBarry Smith     break;
183d49b2adcSBarry Smith   case 6:
184d49b2adcSBarry Smith     for (i = 0; i < mbs; i++) {
185d49b2adcSBarry Smith       odiag = v + 36 * diag_offset[i];
1869566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag, odiag, 36));
1879566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_6(diag, shift, allowzeropivot, &zeropivotdetected));
1887b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
189d49b2adcSBarry Smith       diag += 36;
190d49b2adcSBarry Smith     }
191d49b2adcSBarry Smith     break;
192de80f912SBarry Smith   case 7:
193de80f912SBarry Smith     for (i = 0; i < mbs; i++) {
194de80f912SBarry Smith       odiag = v + 49 * diag_offset[i];
1959566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag, odiag, 49));
1969566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_7(diag, shift, allowzeropivot, &zeropivotdetected));
1977b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
198de80f912SBarry Smith       diag += 49;
199de80f912SBarry Smith     }
200de80f912SBarry Smith     break;
201b01c7715SBarry Smith   default:
2029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(bs, &v_work, bs, &v_pivots));
203de80f912SBarry Smith     for (i = 0; i < mbs; i++) {
204de80f912SBarry Smith       odiag = v + bs2 * diag_offset[i];
2059566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag, odiag, bs2));
2069566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A(bs, diag, v_pivots, v_work, allowzeropivot, &zeropivotdetected));
2077b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
208de80f912SBarry Smith       diag += bs2;
209de80f912SBarry Smith     }
2109566063dSJacob Faibussowitsch     PetscCall(PetscFree2(v_work, v_pivots));
211b01c7715SBarry Smith   }
212b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
2133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214b01c7715SBarry Smith }
215b01c7715SBarry Smith 
21666976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_SeqBAIJ(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
217d71ae5a4SJacob Faibussowitsch {
2186d3beeddSMatthew Knepley   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
219e48d15efSToby Isaac   PetscScalar       *x, *work, *w, *workt, *t;
220e48d15efSToby Isaac   const MatScalar   *v, *aa = a->a, *idiag;
221e48d15efSToby Isaac   const PetscScalar *b, *xb;
2225455b99fSToby Isaac   PetscScalar        s[7], xw[7] = {0}; /* avoid some compilers thinking xw is uninitialized */
223e48d15efSToby Isaac   PetscInt           m = a->mbs, i, i2, nz, bs = A->rmap->bs, bs2 = bs * bs, k, j, idx, it;
224c1ac3661SBarry Smith   const PetscInt    *diag, *ai = a->i, *aj = a->j, *vi;
225b01c7715SBarry Smith 
226b01c7715SBarry Smith   PetscFunctionBegin;
227b01c7715SBarry Smith   its = its * lits;
2285f80ce2aSJacob Faibussowitsch   PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat");
2295f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
2305f80ce2aSJacob Faibussowitsch   PetscCheck(!fshift, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for diagonal shift");
2315f80ce2aSJacob Faibussowitsch   PetscCheck(omega == 1.0, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for non-trivial relaxation factor");
2325f80ce2aSJacob Faibussowitsch   PetscCheck(!(flag & SOR_APPLY_UPPER) && !(flag & SOR_APPLY_LOWER), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for applying upper or lower triangular parts");
233b01c7715SBarry Smith 
2349566063dSJacob Faibussowitsch   if (!a->idiagvalid) PetscCall(MatInvertBlockDiagonal(A, NULL));
235b01c7715SBarry Smith 
2363ba16761SJacob Faibussowitsch   if (!m) PetscFunctionReturn(PETSC_SUCCESS);
237b01c7715SBarry Smith   diag  = a->diag;
238b01c7715SBarry Smith   idiag = a->idiag;
239de80f912SBarry Smith   k     = PetscMax(A->rmap->n, A->cmap->n);
24048a46eb9SPierre Jolivet   if (!a->mult_work) PetscCall(PetscMalloc1(k + 1, &a->mult_work));
24148a46eb9SPierre Jolivet   if (!a->sor_workt) PetscCall(PetscMalloc1(k, &a->sor_workt));
24248a46eb9SPierre Jolivet   if (!a->sor_work) PetscCall(PetscMalloc1(bs, &a->sor_work));
2433475c22fSBarry Smith   work = a->mult_work;
2443475c22fSBarry Smith   t    = a->sor_workt;
245de80f912SBarry Smith   w    = a->sor_work;
246de80f912SBarry Smith 
2479566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx, &x));
2489566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb, &b));
249de80f912SBarry Smith 
250de80f912SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
251de80f912SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
252e48d15efSToby Isaac       switch (bs) {
253e48d15efSToby Isaac       case 1:
254e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(x, idiag, b);
255e48d15efSToby Isaac         t[0] = b[0];
256e48d15efSToby Isaac         i2   = 1;
257e48d15efSToby Isaac         idiag += 1;
258e48d15efSToby Isaac         for (i = 1; i < m; i++) {
259e48d15efSToby Isaac           v    = aa + ai[i];
260e48d15efSToby Isaac           vi   = aj + ai[i];
261e48d15efSToby Isaac           nz   = diag[i] - ai[i];
262e48d15efSToby Isaac           s[0] = b[i2];
263e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
264e48d15efSToby Isaac             xw[0] = x[vi[j]];
265e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw);
266e48d15efSToby Isaac           }
267e48d15efSToby Isaac           t[i2] = s[0];
268e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw, idiag, s);
269e48d15efSToby Isaac           x[i2] = xw[0];
270e48d15efSToby Isaac           idiag += 1;
271e48d15efSToby Isaac           i2 += 1;
272e48d15efSToby Isaac         }
273e48d15efSToby Isaac         break;
274e48d15efSToby Isaac       case 2:
275e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(x, idiag, b);
2769371c9d4SSatish Balay         t[0] = b[0];
2779371c9d4SSatish Balay         t[1] = b[1];
278e48d15efSToby Isaac         i2   = 2;
279e48d15efSToby Isaac         idiag += 4;
280e48d15efSToby Isaac         for (i = 1; i < m; i++) {
281e48d15efSToby Isaac           v    = aa + 4 * ai[i];
282e48d15efSToby Isaac           vi   = aj + ai[i];
283e48d15efSToby Isaac           nz   = diag[i] - ai[i];
2849371c9d4SSatish Balay           s[0] = b[i2];
2859371c9d4SSatish Balay           s[1] = b[i2 + 1];
286e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
287e48d15efSToby Isaac             idx   = 2 * vi[j];
288e48d15efSToby Isaac             it    = 4 * j;
2899371c9d4SSatish Balay             xw[0] = x[idx];
2909371c9d4SSatish Balay             xw[1] = x[1 + idx];
291e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw);
292e48d15efSToby Isaac           }
2939371c9d4SSatish Balay           t[i2]     = s[0];
2949371c9d4SSatish Balay           t[i2 + 1] = s[1];
295e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw, idiag, s);
2969371c9d4SSatish Balay           x[i2]     = xw[0];
2979371c9d4SSatish Balay           x[i2 + 1] = xw[1];
298e48d15efSToby Isaac           idiag += 4;
299e48d15efSToby Isaac           i2 += 2;
300e48d15efSToby Isaac         }
301e48d15efSToby Isaac         break;
302e48d15efSToby Isaac       case 3:
303e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(x, idiag, b);
3049371c9d4SSatish Balay         t[0] = b[0];
3059371c9d4SSatish Balay         t[1] = b[1];
3069371c9d4SSatish Balay         t[2] = b[2];
307e48d15efSToby Isaac         i2   = 3;
308e48d15efSToby Isaac         idiag += 9;
309e48d15efSToby Isaac         for (i = 1; i < m; i++) {
310e48d15efSToby Isaac           v    = aa + 9 * ai[i];
311e48d15efSToby Isaac           vi   = aj + ai[i];
312e48d15efSToby Isaac           nz   = diag[i] - ai[i];
3139371c9d4SSatish Balay           s[0] = b[i2];
3149371c9d4SSatish Balay           s[1] = b[i2 + 1];
3159371c9d4SSatish Balay           s[2] = b[i2 + 2];
316e48d15efSToby Isaac           while (nz--) {
317e48d15efSToby Isaac             idx   = 3 * (*vi++);
3189371c9d4SSatish Balay             xw[0] = x[idx];
3199371c9d4SSatish Balay             xw[1] = x[1 + idx];
3209371c9d4SSatish Balay             xw[2] = x[2 + idx];
321e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw);
322e48d15efSToby Isaac             v += 9;
323e48d15efSToby Isaac           }
3249371c9d4SSatish Balay           t[i2]     = s[0];
3259371c9d4SSatish Balay           t[i2 + 1] = s[1];
3269371c9d4SSatish Balay           t[i2 + 2] = s[2];
327e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw, idiag, s);
3289371c9d4SSatish Balay           x[i2]     = xw[0];
3299371c9d4SSatish Balay           x[i2 + 1] = xw[1];
3309371c9d4SSatish Balay           x[i2 + 2] = xw[2];
331e48d15efSToby Isaac           idiag += 9;
332e48d15efSToby Isaac           i2 += 3;
333e48d15efSToby Isaac         }
334e48d15efSToby Isaac         break;
335e48d15efSToby Isaac       case 4:
336e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(x, idiag, b);
3379371c9d4SSatish Balay         t[0] = b[0];
3389371c9d4SSatish Balay         t[1] = b[1];
3399371c9d4SSatish Balay         t[2] = b[2];
3409371c9d4SSatish Balay         t[3] = b[3];
341e48d15efSToby Isaac         i2   = 4;
342e48d15efSToby Isaac         idiag += 16;
343e48d15efSToby Isaac         for (i = 1; i < m; i++) {
344e48d15efSToby Isaac           v    = aa + 16 * ai[i];
345e48d15efSToby Isaac           vi   = aj + ai[i];
346e48d15efSToby Isaac           nz   = diag[i] - ai[i];
3479371c9d4SSatish Balay           s[0] = b[i2];
3489371c9d4SSatish Balay           s[1] = b[i2 + 1];
3499371c9d4SSatish Balay           s[2] = b[i2 + 2];
3509371c9d4SSatish Balay           s[3] = b[i2 + 3];
351e48d15efSToby Isaac           while (nz--) {
352e48d15efSToby Isaac             idx   = 4 * (*vi++);
3539371c9d4SSatish Balay             xw[0] = x[idx];
3549371c9d4SSatish Balay             xw[1] = x[1 + idx];
3559371c9d4SSatish Balay             xw[2] = x[2 + idx];
3569371c9d4SSatish Balay             xw[3] = x[3 + idx];
357e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw);
358e48d15efSToby Isaac             v += 16;
359e48d15efSToby Isaac           }
3609371c9d4SSatish Balay           t[i2]     = s[0];
3619371c9d4SSatish Balay           t[i2 + 1] = s[1];
3629371c9d4SSatish Balay           t[i2 + 2] = s[2];
3639371c9d4SSatish Balay           t[i2 + 3] = s[3];
364e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw, idiag, s);
3659371c9d4SSatish Balay           x[i2]     = xw[0];
3669371c9d4SSatish Balay           x[i2 + 1] = xw[1];
3679371c9d4SSatish Balay           x[i2 + 2] = xw[2];
3689371c9d4SSatish Balay           x[i2 + 3] = xw[3];
369e48d15efSToby Isaac           idiag += 16;
370e48d15efSToby Isaac           i2 += 4;
371e48d15efSToby Isaac         }
372e48d15efSToby Isaac         break;
373e48d15efSToby Isaac       case 5:
374e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(x, idiag, b);
3759371c9d4SSatish Balay         t[0] = b[0];
3769371c9d4SSatish Balay         t[1] = b[1];
3779371c9d4SSatish Balay         t[2] = b[2];
3789371c9d4SSatish Balay         t[3] = b[3];
3799371c9d4SSatish Balay         t[4] = b[4];
380e48d15efSToby Isaac         i2   = 5;
381e48d15efSToby Isaac         idiag += 25;
382e48d15efSToby Isaac         for (i = 1; i < m; i++) {
383e48d15efSToby Isaac           v    = aa + 25 * ai[i];
384e48d15efSToby Isaac           vi   = aj + ai[i];
385e48d15efSToby Isaac           nz   = diag[i] - ai[i];
3869371c9d4SSatish Balay           s[0] = b[i2];
3879371c9d4SSatish Balay           s[1] = b[i2 + 1];
3889371c9d4SSatish Balay           s[2] = b[i2 + 2];
3899371c9d4SSatish Balay           s[3] = b[i2 + 3];
3909371c9d4SSatish Balay           s[4] = b[i2 + 4];
391e48d15efSToby Isaac           while (nz--) {
392e48d15efSToby Isaac             idx   = 5 * (*vi++);
3939371c9d4SSatish Balay             xw[0] = x[idx];
3949371c9d4SSatish Balay             xw[1] = x[1 + idx];
3959371c9d4SSatish Balay             xw[2] = x[2 + idx];
3969371c9d4SSatish Balay             xw[3] = x[3 + idx];
3979371c9d4SSatish Balay             xw[4] = x[4 + idx];
398e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw);
399e48d15efSToby Isaac             v += 25;
400e48d15efSToby Isaac           }
4019371c9d4SSatish Balay           t[i2]     = s[0];
4029371c9d4SSatish Balay           t[i2 + 1] = s[1];
4039371c9d4SSatish Balay           t[i2 + 2] = s[2];
4049371c9d4SSatish Balay           t[i2 + 3] = s[3];
4059371c9d4SSatish Balay           t[i2 + 4] = s[4];
406e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw, idiag, s);
4079371c9d4SSatish Balay           x[i2]     = xw[0];
4089371c9d4SSatish Balay           x[i2 + 1] = xw[1];
4099371c9d4SSatish Balay           x[i2 + 2] = xw[2];
4109371c9d4SSatish Balay           x[i2 + 3] = xw[3];
4119371c9d4SSatish Balay           x[i2 + 4] = xw[4];
412e48d15efSToby Isaac           idiag += 25;
413e48d15efSToby Isaac           i2 += 5;
414e48d15efSToby Isaac         }
415e48d15efSToby Isaac         break;
416e48d15efSToby Isaac       case 6:
417e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(x, idiag, b);
4189371c9d4SSatish Balay         t[0] = b[0];
4199371c9d4SSatish Balay         t[1] = b[1];
4209371c9d4SSatish Balay         t[2] = b[2];
4219371c9d4SSatish Balay         t[3] = b[3];
4229371c9d4SSatish Balay         t[4] = b[4];
4239371c9d4SSatish Balay         t[5] = b[5];
424e48d15efSToby Isaac         i2   = 6;
425e48d15efSToby Isaac         idiag += 36;
426e48d15efSToby Isaac         for (i = 1; i < m; i++) {
427e48d15efSToby Isaac           v    = aa + 36 * ai[i];
428e48d15efSToby Isaac           vi   = aj + ai[i];
429e48d15efSToby Isaac           nz   = diag[i] - ai[i];
4309371c9d4SSatish Balay           s[0] = b[i2];
4319371c9d4SSatish Balay           s[1] = b[i2 + 1];
4329371c9d4SSatish Balay           s[2] = b[i2 + 2];
4339371c9d4SSatish Balay           s[3] = b[i2 + 3];
4349371c9d4SSatish Balay           s[4] = b[i2 + 4];
4359371c9d4SSatish Balay           s[5] = b[i2 + 5];
436e48d15efSToby Isaac           while (nz--) {
437e48d15efSToby Isaac             idx   = 6 * (*vi++);
4389371c9d4SSatish Balay             xw[0] = x[idx];
4399371c9d4SSatish Balay             xw[1] = x[1 + idx];
4409371c9d4SSatish Balay             xw[2] = x[2 + idx];
4419371c9d4SSatish Balay             xw[3] = x[3 + idx];
4429371c9d4SSatish Balay             xw[4] = x[4 + idx];
4439371c9d4SSatish Balay             xw[5] = x[5 + idx];
444e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw);
445e48d15efSToby Isaac             v += 36;
446e48d15efSToby Isaac           }
4479371c9d4SSatish Balay           t[i2]     = s[0];
4489371c9d4SSatish Balay           t[i2 + 1] = s[1];
4499371c9d4SSatish Balay           t[i2 + 2] = s[2];
4509371c9d4SSatish Balay           t[i2 + 3] = s[3];
4519371c9d4SSatish Balay           t[i2 + 4] = s[4];
4529371c9d4SSatish Balay           t[i2 + 5] = s[5];
453e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw, idiag, s);
4549371c9d4SSatish Balay           x[i2]     = xw[0];
4559371c9d4SSatish Balay           x[i2 + 1] = xw[1];
4569371c9d4SSatish Balay           x[i2 + 2] = xw[2];
4579371c9d4SSatish Balay           x[i2 + 3] = xw[3];
4589371c9d4SSatish Balay           x[i2 + 4] = xw[4];
4599371c9d4SSatish Balay           x[i2 + 5] = xw[5];
460e48d15efSToby Isaac           idiag += 36;
461e48d15efSToby Isaac           i2 += 6;
462e48d15efSToby Isaac         }
463e48d15efSToby Isaac         break;
464e48d15efSToby Isaac       case 7:
465e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x, idiag, b);
4669371c9d4SSatish Balay         t[0] = b[0];
4679371c9d4SSatish Balay         t[1] = b[1];
4689371c9d4SSatish Balay         t[2] = b[2];
4699371c9d4SSatish Balay         t[3] = b[3];
4709371c9d4SSatish Balay         t[4] = b[4];
4719371c9d4SSatish Balay         t[5] = b[5];
4729371c9d4SSatish Balay         t[6] = b[6];
473e48d15efSToby Isaac         i2   = 7;
474e48d15efSToby Isaac         idiag += 49;
475e48d15efSToby Isaac         for (i = 1; i < m; i++) {
476e48d15efSToby Isaac           v    = aa + 49 * ai[i];
477e48d15efSToby Isaac           vi   = aj + ai[i];
478e48d15efSToby Isaac           nz   = diag[i] - ai[i];
4799371c9d4SSatish Balay           s[0] = b[i2];
4809371c9d4SSatish Balay           s[1] = b[i2 + 1];
4819371c9d4SSatish Balay           s[2] = b[i2 + 2];
4829371c9d4SSatish Balay           s[3] = b[i2 + 3];
4839371c9d4SSatish Balay           s[4] = b[i2 + 4];
4849371c9d4SSatish Balay           s[5] = b[i2 + 5];
4859371c9d4SSatish Balay           s[6] = b[i2 + 6];
486e48d15efSToby Isaac           while (nz--) {
487e48d15efSToby Isaac             idx   = 7 * (*vi++);
4889371c9d4SSatish Balay             xw[0] = x[idx];
4899371c9d4SSatish Balay             xw[1] = x[1 + idx];
4909371c9d4SSatish Balay             xw[2] = x[2 + idx];
4919371c9d4SSatish Balay             xw[3] = x[3 + idx];
4929371c9d4SSatish Balay             xw[4] = x[4 + idx];
4939371c9d4SSatish Balay             xw[5] = x[5 + idx];
4949371c9d4SSatish Balay             xw[6] = x[6 + idx];
495e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw);
496e48d15efSToby Isaac             v += 49;
497e48d15efSToby Isaac           }
4989371c9d4SSatish Balay           t[i2]     = s[0];
4999371c9d4SSatish Balay           t[i2 + 1] = s[1];
5009371c9d4SSatish Balay           t[i2 + 2] = s[2];
5019371c9d4SSatish Balay           t[i2 + 3] = s[3];
5029371c9d4SSatish Balay           t[i2 + 4] = s[4];
5039371c9d4SSatish Balay           t[i2 + 5] = s[5];
5049371c9d4SSatish Balay           t[i2 + 6] = s[6];
505e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw, idiag, s);
5069371c9d4SSatish Balay           x[i2]     = xw[0];
5079371c9d4SSatish Balay           x[i2 + 1] = xw[1];
5089371c9d4SSatish Balay           x[i2 + 2] = xw[2];
5099371c9d4SSatish Balay           x[i2 + 3] = xw[3];
5109371c9d4SSatish Balay           x[i2 + 4] = xw[4];
5119371c9d4SSatish Balay           x[i2 + 5] = xw[5];
5129371c9d4SSatish Balay           x[i2 + 6] = xw[6];
513e48d15efSToby Isaac           idiag += 49;
514e48d15efSToby Isaac           i2 += 7;
515e48d15efSToby Isaac         }
516e48d15efSToby Isaac         break;
517e48d15efSToby Isaac       default:
51896b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs, bs, b, idiag, x);
5199566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(t, b, bs));
520de80f912SBarry Smith         i2 = bs;
521de80f912SBarry Smith         idiag += bs2;
522de80f912SBarry Smith         for (i = 1; i < m; i++) {
523de80f912SBarry Smith           v  = aa + bs2 * ai[i];
524de80f912SBarry Smith           vi = aj + ai[i];
525de80f912SBarry Smith           nz = diag[i] - ai[i];
526de80f912SBarry Smith 
5279566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w, b + i2, bs));
528de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
529de80f912SBarry Smith           workt = work;
530de80f912SBarry Smith           for (j = 0; j < nz; j++) {
5319566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs));
532de80f912SBarry Smith             workt += bs;
533de80f912SBarry Smith           }
53496b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work);
5359566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(t + i2, w, bs));
53696b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs, bs, w, idiag, x + i2);
537de80f912SBarry Smith 
538de80f912SBarry Smith           idiag += bs2;
539de80f912SBarry Smith           i2 += bs;
540de80f912SBarry Smith         }
541e48d15efSToby Isaac         break;
542e48d15efSToby Isaac       }
543de80f912SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
5449566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(1.0 * bs2 * a->nz));
545e48d15efSToby Isaac       xb = t;
5469371c9d4SSatish Balay     } else xb = b;
547de80f912SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
548e48d15efSToby Isaac       idiag = a->idiag + bs2 * (a->mbs - 1);
549e48d15efSToby Isaac       i2    = bs * (m - 1);
550e48d15efSToby Isaac       switch (bs) {
551e48d15efSToby Isaac       case 1:
552e48d15efSToby Isaac         s[0] = xb[i2];
553e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(xw, idiag, s);
554e48d15efSToby Isaac         x[i2] = xw[0];
555e48d15efSToby Isaac         i2 -= 1;
556e48d15efSToby Isaac         for (i = m - 2; i >= 0; i--) {
557e48d15efSToby Isaac           v    = aa + (diag[i] + 1);
558e48d15efSToby Isaac           vi   = aj + diag[i] + 1;
559e48d15efSToby Isaac           nz   = ai[i + 1] - diag[i] - 1;
560e48d15efSToby Isaac           s[0] = xb[i2];
561e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
562e48d15efSToby Isaac             xw[0] = x[vi[j]];
563e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw);
564e48d15efSToby Isaac           }
565e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw, idiag, s);
566e48d15efSToby Isaac           x[i2] = xw[0];
567e48d15efSToby Isaac           idiag -= 1;
568e48d15efSToby Isaac           i2 -= 1;
569e48d15efSToby Isaac         }
570e48d15efSToby Isaac         break;
571e48d15efSToby Isaac       case 2:
5729371c9d4SSatish Balay         s[0] = xb[i2];
5739371c9d4SSatish Balay         s[1] = xb[i2 + 1];
574e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(xw, idiag, s);
5759371c9d4SSatish Balay         x[i2]     = xw[0];
5769371c9d4SSatish Balay         x[i2 + 1] = xw[1];
577e48d15efSToby Isaac         i2 -= 2;
578e48d15efSToby Isaac         idiag -= 4;
579e48d15efSToby Isaac         for (i = m - 2; i >= 0; i--) {
580e48d15efSToby Isaac           v    = aa + 4 * (diag[i] + 1);
581e48d15efSToby Isaac           vi   = aj + diag[i] + 1;
582e48d15efSToby Isaac           nz   = ai[i + 1] - diag[i] - 1;
5839371c9d4SSatish Balay           s[0] = xb[i2];
5849371c9d4SSatish Balay           s[1] = xb[i2 + 1];
585e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
586e48d15efSToby Isaac             idx   = 2 * vi[j];
587e48d15efSToby Isaac             it    = 4 * j;
5889371c9d4SSatish Balay             xw[0] = x[idx];
5899371c9d4SSatish Balay             xw[1] = x[1 + idx];
590e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw);
591e48d15efSToby Isaac           }
592e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw, idiag, s);
5939371c9d4SSatish Balay           x[i2]     = xw[0];
5949371c9d4SSatish Balay           x[i2 + 1] = xw[1];
595e48d15efSToby Isaac           idiag -= 4;
596e48d15efSToby Isaac           i2 -= 2;
597e48d15efSToby Isaac         }
598e48d15efSToby Isaac         break;
599e48d15efSToby Isaac       case 3:
6009371c9d4SSatish Balay         s[0] = xb[i2];
6019371c9d4SSatish Balay         s[1] = xb[i2 + 1];
6029371c9d4SSatish Balay         s[2] = xb[i2 + 2];
603e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(xw, idiag, s);
6049371c9d4SSatish Balay         x[i2]     = xw[0];
6059371c9d4SSatish Balay         x[i2 + 1] = xw[1];
6069371c9d4SSatish Balay         x[i2 + 2] = xw[2];
607e48d15efSToby Isaac         i2 -= 3;
608e48d15efSToby Isaac         idiag -= 9;
609e48d15efSToby Isaac         for (i = m - 2; i >= 0; i--) {
610e48d15efSToby Isaac           v    = aa + 9 * (diag[i] + 1);
611e48d15efSToby Isaac           vi   = aj + diag[i] + 1;
612e48d15efSToby Isaac           nz   = ai[i + 1] - diag[i] - 1;
6139371c9d4SSatish Balay           s[0] = xb[i2];
6149371c9d4SSatish Balay           s[1] = xb[i2 + 1];
6159371c9d4SSatish Balay           s[2] = xb[i2 + 2];
616e48d15efSToby Isaac           while (nz--) {
617e48d15efSToby Isaac             idx   = 3 * (*vi++);
6189371c9d4SSatish Balay             xw[0] = x[idx];
6199371c9d4SSatish Balay             xw[1] = x[1 + idx];
6209371c9d4SSatish Balay             xw[2] = x[2 + idx];
621e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw);
622e48d15efSToby Isaac             v += 9;
623e48d15efSToby Isaac           }
624e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw, idiag, s);
6259371c9d4SSatish Balay           x[i2]     = xw[0];
6269371c9d4SSatish Balay           x[i2 + 1] = xw[1];
6279371c9d4SSatish Balay           x[i2 + 2] = xw[2];
628e48d15efSToby Isaac           idiag -= 9;
629e48d15efSToby Isaac           i2 -= 3;
630e48d15efSToby Isaac         }
631e48d15efSToby Isaac         break;
632e48d15efSToby Isaac       case 4:
6339371c9d4SSatish Balay         s[0] = xb[i2];
6349371c9d4SSatish Balay         s[1] = xb[i2 + 1];
6359371c9d4SSatish Balay         s[2] = xb[i2 + 2];
6369371c9d4SSatish Balay         s[3] = xb[i2 + 3];
637e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(xw, idiag, s);
6389371c9d4SSatish Balay         x[i2]     = xw[0];
6399371c9d4SSatish Balay         x[i2 + 1] = xw[1];
6409371c9d4SSatish Balay         x[i2 + 2] = xw[2];
6419371c9d4SSatish Balay         x[i2 + 3] = xw[3];
642e48d15efSToby Isaac         i2 -= 4;
643e48d15efSToby Isaac         idiag -= 16;
644e48d15efSToby Isaac         for (i = m - 2; i >= 0; i--) {
645e48d15efSToby Isaac           v    = aa + 16 * (diag[i] + 1);
646e48d15efSToby Isaac           vi   = aj + diag[i] + 1;
647e48d15efSToby Isaac           nz   = ai[i + 1] - diag[i] - 1;
6489371c9d4SSatish Balay           s[0] = xb[i2];
6499371c9d4SSatish Balay           s[1] = xb[i2 + 1];
6509371c9d4SSatish Balay           s[2] = xb[i2 + 2];
6519371c9d4SSatish Balay           s[3] = xb[i2 + 3];
652e48d15efSToby Isaac           while (nz--) {
653e48d15efSToby Isaac             idx   = 4 * (*vi++);
6549371c9d4SSatish Balay             xw[0] = x[idx];
6559371c9d4SSatish Balay             xw[1] = x[1 + idx];
6569371c9d4SSatish Balay             xw[2] = x[2 + idx];
6579371c9d4SSatish Balay             xw[3] = x[3 + idx];
658e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw);
659e48d15efSToby Isaac             v += 16;
660e48d15efSToby Isaac           }
661e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw, idiag, s);
6629371c9d4SSatish Balay           x[i2]     = xw[0];
6639371c9d4SSatish Balay           x[i2 + 1] = xw[1];
6649371c9d4SSatish Balay           x[i2 + 2] = xw[2];
6659371c9d4SSatish Balay           x[i2 + 3] = xw[3];
666e48d15efSToby Isaac           idiag -= 16;
667e48d15efSToby Isaac           i2 -= 4;
668e48d15efSToby Isaac         }
669e48d15efSToby Isaac         break;
670e48d15efSToby Isaac       case 5:
6719371c9d4SSatish Balay         s[0] = xb[i2];
6729371c9d4SSatish Balay         s[1] = xb[i2 + 1];
6739371c9d4SSatish Balay         s[2] = xb[i2 + 2];
6749371c9d4SSatish Balay         s[3] = xb[i2 + 3];
6759371c9d4SSatish Balay         s[4] = xb[i2 + 4];
676e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(xw, idiag, s);
6779371c9d4SSatish Balay         x[i2]     = xw[0];
6789371c9d4SSatish Balay         x[i2 + 1] = xw[1];
6799371c9d4SSatish Balay         x[i2 + 2] = xw[2];
6809371c9d4SSatish Balay         x[i2 + 3] = xw[3];
6819371c9d4SSatish Balay         x[i2 + 4] = xw[4];
682e48d15efSToby Isaac         i2 -= 5;
683e48d15efSToby Isaac         idiag -= 25;
684e48d15efSToby Isaac         for (i = m - 2; i >= 0; i--) {
685e48d15efSToby Isaac           v    = aa + 25 * (diag[i] + 1);
686e48d15efSToby Isaac           vi   = aj + diag[i] + 1;
687e48d15efSToby Isaac           nz   = ai[i + 1] - diag[i] - 1;
6889371c9d4SSatish Balay           s[0] = xb[i2];
6899371c9d4SSatish Balay           s[1] = xb[i2 + 1];
6909371c9d4SSatish Balay           s[2] = xb[i2 + 2];
6919371c9d4SSatish Balay           s[3] = xb[i2 + 3];
6929371c9d4SSatish Balay           s[4] = xb[i2 + 4];
693e48d15efSToby Isaac           while (nz--) {
694e48d15efSToby Isaac             idx   = 5 * (*vi++);
6959371c9d4SSatish Balay             xw[0] = x[idx];
6969371c9d4SSatish Balay             xw[1] = x[1 + idx];
6979371c9d4SSatish Balay             xw[2] = x[2 + idx];
6989371c9d4SSatish Balay             xw[3] = x[3 + idx];
6999371c9d4SSatish Balay             xw[4] = x[4 + idx];
700e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw);
701e48d15efSToby Isaac             v += 25;
702e48d15efSToby Isaac           }
703e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw, idiag, s);
7049371c9d4SSatish Balay           x[i2]     = xw[0];
7059371c9d4SSatish Balay           x[i2 + 1] = xw[1];
7069371c9d4SSatish Balay           x[i2 + 2] = xw[2];
7079371c9d4SSatish Balay           x[i2 + 3] = xw[3];
7089371c9d4SSatish Balay           x[i2 + 4] = xw[4];
709e48d15efSToby Isaac           idiag -= 25;
710e48d15efSToby Isaac           i2 -= 5;
711e48d15efSToby Isaac         }
712e48d15efSToby Isaac         break;
713e48d15efSToby Isaac       case 6:
7149371c9d4SSatish Balay         s[0] = xb[i2];
7159371c9d4SSatish Balay         s[1] = xb[i2 + 1];
7169371c9d4SSatish Balay         s[2] = xb[i2 + 2];
7179371c9d4SSatish Balay         s[3] = xb[i2 + 3];
7189371c9d4SSatish Balay         s[4] = xb[i2 + 4];
7199371c9d4SSatish Balay         s[5] = xb[i2 + 5];
720e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(xw, idiag, s);
7219371c9d4SSatish Balay         x[i2]     = xw[0];
7229371c9d4SSatish Balay         x[i2 + 1] = xw[1];
7239371c9d4SSatish Balay         x[i2 + 2] = xw[2];
7249371c9d4SSatish Balay         x[i2 + 3] = xw[3];
7259371c9d4SSatish Balay         x[i2 + 4] = xw[4];
7269371c9d4SSatish Balay         x[i2 + 5] = xw[5];
727e48d15efSToby Isaac         i2 -= 6;
728e48d15efSToby Isaac         idiag -= 36;
729e48d15efSToby Isaac         for (i = m - 2; i >= 0; i--) {
730e48d15efSToby Isaac           v    = aa + 36 * (diag[i] + 1);
731e48d15efSToby Isaac           vi   = aj + diag[i] + 1;
732e48d15efSToby Isaac           nz   = ai[i + 1] - diag[i] - 1;
7339371c9d4SSatish Balay           s[0] = xb[i2];
7349371c9d4SSatish Balay           s[1] = xb[i2 + 1];
7359371c9d4SSatish Balay           s[2] = xb[i2 + 2];
7369371c9d4SSatish Balay           s[3] = xb[i2 + 3];
7379371c9d4SSatish Balay           s[4] = xb[i2 + 4];
7389371c9d4SSatish Balay           s[5] = xb[i2 + 5];
739e48d15efSToby Isaac           while (nz--) {
740e48d15efSToby Isaac             idx   = 6 * (*vi++);
7419371c9d4SSatish Balay             xw[0] = x[idx];
7429371c9d4SSatish Balay             xw[1] = x[1 + idx];
7439371c9d4SSatish Balay             xw[2] = x[2 + idx];
7449371c9d4SSatish Balay             xw[3] = x[3 + idx];
7459371c9d4SSatish Balay             xw[4] = x[4 + idx];
7469371c9d4SSatish Balay             xw[5] = x[5 + idx];
747e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw);
748e48d15efSToby Isaac             v += 36;
749e48d15efSToby Isaac           }
750e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw, idiag, s);
7519371c9d4SSatish Balay           x[i2]     = xw[0];
7529371c9d4SSatish Balay           x[i2 + 1] = xw[1];
7539371c9d4SSatish Balay           x[i2 + 2] = xw[2];
7549371c9d4SSatish Balay           x[i2 + 3] = xw[3];
7559371c9d4SSatish Balay           x[i2 + 4] = xw[4];
7569371c9d4SSatish Balay           x[i2 + 5] = xw[5];
757e48d15efSToby Isaac           idiag -= 36;
758e48d15efSToby Isaac           i2 -= 6;
759e48d15efSToby Isaac         }
760e48d15efSToby Isaac         break;
761e48d15efSToby Isaac       case 7:
7629371c9d4SSatish Balay         s[0] = xb[i2];
7639371c9d4SSatish Balay         s[1] = xb[i2 + 1];
7649371c9d4SSatish Balay         s[2] = xb[i2 + 2];
7659371c9d4SSatish Balay         s[3] = xb[i2 + 3];
7669371c9d4SSatish Balay         s[4] = xb[i2 + 4];
7679371c9d4SSatish Balay         s[5] = xb[i2 + 5];
7689371c9d4SSatish Balay         s[6] = xb[i2 + 6];
769e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x, idiag, b);
7709371c9d4SSatish Balay         x[i2]     = xw[0];
7719371c9d4SSatish Balay         x[i2 + 1] = xw[1];
7729371c9d4SSatish Balay         x[i2 + 2] = xw[2];
7739371c9d4SSatish Balay         x[i2 + 3] = xw[3];
7749371c9d4SSatish Balay         x[i2 + 4] = xw[4];
7759371c9d4SSatish Balay         x[i2 + 5] = xw[5];
7769371c9d4SSatish Balay         x[i2 + 6] = xw[6];
777e48d15efSToby Isaac         i2 -= 7;
778e48d15efSToby Isaac         idiag -= 49;
779e48d15efSToby Isaac         for (i = m - 2; i >= 0; i--) {
780e48d15efSToby Isaac           v    = aa + 49 * (diag[i] + 1);
781e48d15efSToby Isaac           vi   = aj + diag[i] + 1;
782e48d15efSToby Isaac           nz   = ai[i + 1] - diag[i] - 1;
7839371c9d4SSatish Balay           s[0] = xb[i2];
7849371c9d4SSatish Balay           s[1] = xb[i2 + 1];
7859371c9d4SSatish Balay           s[2] = xb[i2 + 2];
7869371c9d4SSatish Balay           s[3] = xb[i2 + 3];
7879371c9d4SSatish Balay           s[4] = xb[i2 + 4];
7889371c9d4SSatish Balay           s[5] = xb[i2 + 5];
7899371c9d4SSatish Balay           s[6] = xb[i2 + 6];
790e48d15efSToby Isaac           while (nz--) {
791e48d15efSToby Isaac             idx   = 7 * (*vi++);
7929371c9d4SSatish Balay             xw[0] = x[idx];
7939371c9d4SSatish Balay             xw[1] = x[1 + idx];
7949371c9d4SSatish Balay             xw[2] = x[2 + idx];
7959371c9d4SSatish Balay             xw[3] = x[3 + idx];
7969371c9d4SSatish Balay             xw[4] = x[4 + idx];
7979371c9d4SSatish Balay             xw[5] = x[5 + idx];
7989371c9d4SSatish Balay             xw[6] = x[6 + idx];
799e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw);
800e48d15efSToby Isaac             v += 49;
801e48d15efSToby Isaac           }
802e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw, idiag, s);
8039371c9d4SSatish Balay           x[i2]     = xw[0];
8049371c9d4SSatish Balay           x[i2 + 1] = xw[1];
8059371c9d4SSatish Balay           x[i2 + 2] = xw[2];
8069371c9d4SSatish Balay           x[i2 + 3] = xw[3];
8079371c9d4SSatish Balay           x[i2 + 4] = xw[4];
8089371c9d4SSatish Balay           x[i2 + 5] = xw[5];
8099371c9d4SSatish Balay           x[i2 + 6] = xw[6];
810e48d15efSToby Isaac           idiag -= 49;
811e48d15efSToby Isaac           i2 -= 7;
812e48d15efSToby Isaac         }
813e48d15efSToby Isaac         break;
814e48d15efSToby Isaac       default:
8159566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(w, xb + i2, bs));
81696b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs, bs, w, idiag, x + i2);
817de80f912SBarry Smith         i2 -= bs;
818e48d15efSToby Isaac         idiag -= bs2;
819de80f912SBarry Smith         for (i = m - 2; i >= 0; i--) {
820de80f912SBarry Smith           v  = aa + bs2 * (diag[i] + 1);
821de80f912SBarry Smith           vi = aj + diag[i] + 1;
822de80f912SBarry Smith           nz = ai[i + 1] - diag[i] - 1;
823de80f912SBarry Smith 
8249566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w, xb + i2, bs));
825de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
826de80f912SBarry Smith           workt = work;
827de80f912SBarry Smith           for (j = 0; j < nz; j++) {
8289566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs));
829de80f912SBarry Smith             workt += bs;
830de80f912SBarry Smith           }
83196b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work);
83296b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs, bs, w, idiag, x + i2);
833e48d15efSToby Isaac 
834de80f912SBarry Smith           idiag -= bs2;
835de80f912SBarry Smith           i2 -= bs;
836de80f912SBarry Smith         }
837e48d15efSToby Isaac         break;
838e48d15efSToby Isaac       }
8399566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(1.0 * bs2 * (a->nz)));
840de80f912SBarry Smith     }
841e48d15efSToby Isaac     its--;
842e48d15efSToby Isaac   }
843e48d15efSToby Isaac   while (its--) {
844e48d15efSToby Isaac     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
845e48d15efSToby Isaac       idiag = a->idiag;
846e48d15efSToby Isaac       i2    = 0;
847e48d15efSToby Isaac       switch (bs) {
848e48d15efSToby Isaac       case 1:
849e48d15efSToby Isaac         for (i = 0; i < m; i++) {
850e48d15efSToby Isaac           v    = aa + ai[i];
851e48d15efSToby Isaac           vi   = aj + ai[i];
852e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
853e48d15efSToby Isaac           s[0] = b[i2];
854e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
855e48d15efSToby Isaac             xw[0] = x[vi[j]];
856e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw);
857e48d15efSToby Isaac           }
858e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw, idiag, s);
859e48d15efSToby Isaac           x[i2] += xw[0];
860e48d15efSToby Isaac           idiag += 1;
861e48d15efSToby Isaac           i2 += 1;
862e48d15efSToby Isaac         }
863e48d15efSToby Isaac         break;
864e48d15efSToby Isaac       case 2:
865e48d15efSToby Isaac         for (i = 0; i < m; i++) {
866e48d15efSToby Isaac           v    = aa + 4 * ai[i];
867e48d15efSToby Isaac           vi   = aj + ai[i];
868e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
8699371c9d4SSatish Balay           s[0] = b[i2];
8709371c9d4SSatish Balay           s[1] = b[i2 + 1];
871e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
872e48d15efSToby Isaac             idx   = 2 * vi[j];
873e48d15efSToby Isaac             it    = 4 * j;
8749371c9d4SSatish Balay             xw[0] = x[idx];
8759371c9d4SSatish Balay             xw[1] = x[1 + idx];
876e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw);
877e48d15efSToby Isaac           }
878e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw, idiag, s);
8799371c9d4SSatish Balay           x[i2] += xw[0];
8809371c9d4SSatish Balay           x[i2 + 1] += xw[1];
881e48d15efSToby Isaac           idiag += 4;
882e48d15efSToby Isaac           i2 += 2;
883e48d15efSToby Isaac         }
884e48d15efSToby Isaac         break;
885e48d15efSToby Isaac       case 3:
886e48d15efSToby Isaac         for (i = 0; i < m; i++) {
887e48d15efSToby Isaac           v    = aa + 9 * ai[i];
888e48d15efSToby Isaac           vi   = aj + ai[i];
889e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
8909371c9d4SSatish Balay           s[0] = b[i2];
8919371c9d4SSatish Balay           s[1] = b[i2 + 1];
8929371c9d4SSatish Balay           s[2] = b[i2 + 2];
893e48d15efSToby Isaac           while (nz--) {
894e48d15efSToby Isaac             idx   = 3 * (*vi++);
8959371c9d4SSatish Balay             xw[0] = x[idx];
8969371c9d4SSatish Balay             xw[1] = x[1 + idx];
8979371c9d4SSatish Balay             xw[2] = x[2 + idx];
898e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw);
899e48d15efSToby Isaac             v += 9;
900e48d15efSToby Isaac           }
901e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw, idiag, s);
9029371c9d4SSatish Balay           x[i2] += xw[0];
9039371c9d4SSatish Balay           x[i2 + 1] += xw[1];
9049371c9d4SSatish Balay           x[i2 + 2] += xw[2];
905e48d15efSToby Isaac           idiag += 9;
906e48d15efSToby Isaac           i2 += 3;
907e48d15efSToby Isaac         }
908e48d15efSToby Isaac         break;
909e48d15efSToby Isaac       case 4:
910e48d15efSToby Isaac         for (i = 0; i < m; i++) {
911e48d15efSToby Isaac           v    = aa + 16 * ai[i];
912e48d15efSToby Isaac           vi   = aj + ai[i];
913e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
9149371c9d4SSatish Balay           s[0] = b[i2];
9159371c9d4SSatish Balay           s[1] = b[i2 + 1];
9169371c9d4SSatish Balay           s[2] = b[i2 + 2];
9179371c9d4SSatish Balay           s[3] = b[i2 + 3];
918e48d15efSToby Isaac           while (nz--) {
919e48d15efSToby Isaac             idx   = 4 * (*vi++);
9209371c9d4SSatish Balay             xw[0] = x[idx];
9219371c9d4SSatish Balay             xw[1] = x[1 + idx];
9229371c9d4SSatish Balay             xw[2] = x[2 + idx];
9239371c9d4SSatish Balay             xw[3] = x[3 + idx];
924e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw);
925e48d15efSToby Isaac             v += 16;
926e48d15efSToby Isaac           }
927e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw, idiag, s);
9289371c9d4SSatish Balay           x[i2] += xw[0];
9299371c9d4SSatish Balay           x[i2 + 1] += xw[1];
9309371c9d4SSatish Balay           x[i2 + 2] += xw[2];
9319371c9d4SSatish Balay           x[i2 + 3] += xw[3];
932e48d15efSToby Isaac           idiag += 16;
933e48d15efSToby Isaac           i2 += 4;
934e48d15efSToby Isaac         }
935e48d15efSToby Isaac         break;
936e48d15efSToby Isaac       case 5:
937e48d15efSToby Isaac         for (i = 0; i < m; i++) {
938e48d15efSToby Isaac           v    = aa + 25 * ai[i];
939e48d15efSToby Isaac           vi   = aj + ai[i];
940e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
9419371c9d4SSatish Balay           s[0] = b[i2];
9429371c9d4SSatish Balay           s[1] = b[i2 + 1];
9439371c9d4SSatish Balay           s[2] = b[i2 + 2];
9449371c9d4SSatish Balay           s[3] = b[i2 + 3];
9459371c9d4SSatish Balay           s[4] = b[i2 + 4];
946e48d15efSToby Isaac           while (nz--) {
947e48d15efSToby Isaac             idx   = 5 * (*vi++);
9489371c9d4SSatish Balay             xw[0] = x[idx];
9499371c9d4SSatish Balay             xw[1] = x[1 + idx];
9509371c9d4SSatish Balay             xw[2] = x[2 + idx];
9519371c9d4SSatish Balay             xw[3] = x[3 + idx];
9529371c9d4SSatish Balay             xw[4] = x[4 + idx];
953e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw);
954e48d15efSToby Isaac             v += 25;
955e48d15efSToby Isaac           }
956e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw, idiag, s);
9579371c9d4SSatish Balay           x[i2] += xw[0];
9589371c9d4SSatish Balay           x[i2 + 1] += xw[1];
9599371c9d4SSatish Balay           x[i2 + 2] += xw[2];
9609371c9d4SSatish Balay           x[i2 + 3] += xw[3];
9619371c9d4SSatish Balay           x[i2 + 4] += xw[4];
962e48d15efSToby Isaac           idiag += 25;
963e48d15efSToby Isaac           i2 += 5;
964e48d15efSToby Isaac         }
965e48d15efSToby Isaac         break;
966e48d15efSToby Isaac       case 6:
967e48d15efSToby Isaac         for (i = 0; i < m; i++) {
968e48d15efSToby Isaac           v    = aa + 36 * ai[i];
969e48d15efSToby Isaac           vi   = aj + ai[i];
970e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
9719371c9d4SSatish Balay           s[0] = b[i2];
9729371c9d4SSatish Balay           s[1] = b[i2 + 1];
9739371c9d4SSatish Balay           s[2] = b[i2 + 2];
9749371c9d4SSatish Balay           s[3] = b[i2 + 3];
9759371c9d4SSatish Balay           s[4] = b[i2 + 4];
9769371c9d4SSatish Balay           s[5] = b[i2 + 5];
977e48d15efSToby Isaac           while (nz--) {
978e48d15efSToby Isaac             idx   = 6 * (*vi++);
9799371c9d4SSatish Balay             xw[0] = x[idx];
9809371c9d4SSatish Balay             xw[1] = x[1 + idx];
9819371c9d4SSatish Balay             xw[2] = x[2 + idx];
9829371c9d4SSatish Balay             xw[3] = x[3 + idx];
9839371c9d4SSatish Balay             xw[4] = x[4 + idx];
9849371c9d4SSatish Balay             xw[5] = x[5 + idx];
985e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw);
986e48d15efSToby Isaac             v += 36;
987e48d15efSToby Isaac           }
988e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw, idiag, s);
9899371c9d4SSatish Balay           x[i2] += xw[0];
9909371c9d4SSatish Balay           x[i2 + 1] += xw[1];
9919371c9d4SSatish Balay           x[i2 + 2] += xw[2];
9929371c9d4SSatish Balay           x[i2 + 3] += xw[3];
9939371c9d4SSatish Balay           x[i2 + 4] += xw[4];
9949371c9d4SSatish Balay           x[i2 + 5] += xw[5];
995e48d15efSToby Isaac           idiag += 36;
996e48d15efSToby Isaac           i2 += 6;
997e48d15efSToby Isaac         }
998e48d15efSToby Isaac         break;
999e48d15efSToby Isaac       case 7:
1000e48d15efSToby Isaac         for (i = 0; i < m; i++) {
1001e48d15efSToby Isaac           v    = aa + 49 * ai[i];
1002e48d15efSToby Isaac           vi   = aj + ai[i];
1003e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
10049371c9d4SSatish Balay           s[0] = b[i2];
10059371c9d4SSatish Balay           s[1] = b[i2 + 1];
10069371c9d4SSatish Balay           s[2] = b[i2 + 2];
10079371c9d4SSatish Balay           s[3] = b[i2 + 3];
10089371c9d4SSatish Balay           s[4] = b[i2 + 4];
10099371c9d4SSatish Balay           s[5] = b[i2 + 5];
10109371c9d4SSatish Balay           s[6] = b[i2 + 6];
1011e48d15efSToby Isaac           while (nz--) {
1012e48d15efSToby Isaac             idx   = 7 * (*vi++);
10139371c9d4SSatish Balay             xw[0] = x[idx];
10149371c9d4SSatish Balay             xw[1] = x[1 + idx];
10159371c9d4SSatish Balay             xw[2] = x[2 + idx];
10169371c9d4SSatish Balay             xw[3] = x[3 + idx];
10179371c9d4SSatish Balay             xw[4] = x[4 + idx];
10189371c9d4SSatish Balay             xw[5] = x[5 + idx];
10199371c9d4SSatish Balay             xw[6] = x[6 + idx];
1020e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw);
1021e48d15efSToby Isaac             v += 49;
1022e48d15efSToby Isaac           }
1023e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw, idiag, s);
10249371c9d4SSatish Balay           x[i2] += xw[0];
10259371c9d4SSatish Balay           x[i2 + 1] += xw[1];
10269371c9d4SSatish Balay           x[i2 + 2] += xw[2];
10279371c9d4SSatish Balay           x[i2 + 3] += xw[3];
10289371c9d4SSatish Balay           x[i2 + 4] += xw[4];
10299371c9d4SSatish Balay           x[i2 + 5] += xw[5];
10309371c9d4SSatish Balay           x[i2 + 6] += xw[6];
1031e48d15efSToby Isaac           idiag += 49;
1032e48d15efSToby Isaac           i2 += 7;
1033e48d15efSToby Isaac         }
1034e48d15efSToby Isaac         break;
1035e48d15efSToby Isaac       default:
1036e48d15efSToby Isaac         for (i = 0; i < m; i++) {
1037e48d15efSToby Isaac           v  = aa + bs2 * ai[i];
1038e48d15efSToby Isaac           vi = aj + ai[i];
1039e48d15efSToby Isaac           nz = ai[i + 1] - ai[i];
1040e48d15efSToby Isaac 
10419566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w, b + i2, bs));
1042e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
1043e48d15efSToby Isaac           workt = work;
1044e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
10459566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs));
1046e48d15efSToby Isaac             workt += bs;
1047e48d15efSToby Isaac           }
1048e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work);
1049e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs, bs, w, idiag, x + i2);
1050e48d15efSToby Isaac 
1051e48d15efSToby Isaac           idiag += bs2;
1052e48d15efSToby Isaac           i2 += bs;
1053e48d15efSToby Isaac         }
1054e48d15efSToby Isaac         break;
1055e48d15efSToby Isaac       }
10569566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * bs2 * a->nz));
1057e48d15efSToby Isaac     }
1058e48d15efSToby Isaac     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1059e48d15efSToby Isaac       idiag = a->idiag + bs2 * (a->mbs - 1);
1060e48d15efSToby Isaac       i2    = bs * (m - 1);
1061e48d15efSToby Isaac       switch (bs) {
1062e48d15efSToby Isaac       case 1:
1063e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1064e48d15efSToby Isaac           v    = aa + ai[i];
1065e48d15efSToby Isaac           vi   = aj + ai[i];
1066e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
1067e48d15efSToby Isaac           s[0] = b[i2];
1068e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
1069e48d15efSToby Isaac             xw[0] = x[vi[j]];
1070e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s, (v + j), xw);
1071e48d15efSToby Isaac           }
1072e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw, idiag, s);
1073e48d15efSToby Isaac           x[i2] += xw[0];
1074e48d15efSToby Isaac           idiag -= 1;
1075e48d15efSToby Isaac           i2 -= 1;
1076e48d15efSToby Isaac         }
1077e48d15efSToby Isaac         break;
1078e48d15efSToby Isaac       case 2:
1079e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1080e48d15efSToby Isaac           v    = aa + 4 * ai[i];
1081e48d15efSToby Isaac           vi   = aj + ai[i];
1082e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
10839371c9d4SSatish Balay           s[0] = b[i2];
10849371c9d4SSatish Balay           s[1] = b[i2 + 1];
1085e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
1086e48d15efSToby Isaac             idx   = 2 * vi[j];
1087e48d15efSToby Isaac             it    = 4 * j;
10889371c9d4SSatish Balay             xw[0] = x[idx];
10899371c9d4SSatish Balay             xw[1] = x[1 + idx];
1090e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s, (v + it), xw);
1091e48d15efSToby Isaac           }
1092e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw, idiag, s);
10939371c9d4SSatish Balay           x[i2] += xw[0];
10949371c9d4SSatish Balay           x[i2 + 1] += xw[1];
1095e48d15efSToby Isaac           idiag -= 4;
1096e48d15efSToby Isaac           i2 -= 2;
1097e48d15efSToby Isaac         }
1098e48d15efSToby Isaac         break;
1099e48d15efSToby Isaac       case 3:
1100e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1101e48d15efSToby Isaac           v    = aa + 9 * ai[i];
1102e48d15efSToby Isaac           vi   = aj + ai[i];
1103e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
11049371c9d4SSatish Balay           s[0] = b[i2];
11059371c9d4SSatish Balay           s[1] = b[i2 + 1];
11069371c9d4SSatish Balay           s[2] = b[i2 + 2];
1107e48d15efSToby Isaac           while (nz--) {
1108e48d15efSToby Isaac             idx   = 3 * (*vi++);
11099371c9d4SSatish Balay             xw[0] = x[idx];
11109371c9d4SSatish Balay             xw[1] = x[1 + idx];
11119371c9d4SSatish Balay             xw[2] = x[2 + idx];
1112e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s, v, xw);
1113e48d15efSToby Isaac             v += 9;
1114e48d15efSToby Isaac           }
1115e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw, idiag, s);
11169371c9d4SSatish Balay           x[i2] += xw[0];
11179371c9d4SSatish Balay           x[i2 + 1] += xw[1];
11189371c9d4SSatish Balay           x[i2 + 2] += xw[2];
1119e48d15efSToby Isaac           idiag -= 9;
1120e48d15efSToby Isaac           i2 -= 3;
1121e48d15efSToby Isaac         }
1122e48d15efSToby Isaac         break;
1123e48d15efSToby Isaac       case 4:
1124e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1125e48d15efSToby Isaac           v    = aa + 16 * ai[i];
1126e48d15efSToby Isaac           vi   = aj + ai[i];
1127e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
11289371c9d4SSatish Balay           s[0] = b[i2];
11299371c9d4SSatish Balay           s[1] = b[i2 + 1];
11309371c9d4SSatish Balay           s[2] = b[i2 + 2];
11319371c9d4SSatish Balay           s[3] = b[i2 + 3];
1132e48d15efSToby Isaac           while (nz--) {
1133e48d15efSToby Isaac             idx   = 4 * (*vi++);
11349371c9d4SSatish Balay             xw[0] = x[idx];
11359371c9d4SSatish Balay             xw[1] = x[1 + idx];
11369371c9d4SSatish Balay             xw[2] = x[2 + idx];
11379371c9d4SSatish Balay             xw[3] = x[3 + idx];
1138e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s, v, xw);
1139e48d15efSToby Isaac             v += 16;
1140e48d15efSToby Isaac           }
1141e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw, idiag, s);
11429371c9d4SSatish Balay           x[i2] += xw[0];
11439371c9d4SSatish Balay           x[i2 + 1] += xw[1];
11449371c9d4SSatish Balay           x[i2 + 2] += xw[2];
11459371c9d4SSatish Balay           x[i2 + 3] += xw[3];
1146e48d15efSToby Isaac           idiag -= 16;
1147e48d15efSToby Isaac           i2 -= 4;
1148e48d15efSToby Isaac         }
1149e48d15efSToby Isaac         break;
1150e48d15efSToby Isaac       case 5:
1151e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1152e48d15efSToby Isaac           v    = aa + 25 * ai[i];
1153e48d15efSToby Isaac           vi   = aj + ai[i];
1154e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
11559371c9d4SSatish Balay           s[0] = b[i2];
11569371c9d4SSatish Balay           s[1] = b[i2 + 1];
11579371c9d4SSatish Balay           s[2] = b[i2 + 2];
11589371c9d4SSatish Balay           s[3] = b[i2 + 3];
11599371c9d4SSatish Balay           s[4] = b[i2 + 4];
1160e48d15efSToby Isaac           while (nz--) {
1161e48d15efSToby Isaac             idx   = 5 * (*vi++);
11629371c9d4SSatish Balay             xw[0] = x[idx];
11639371c9d4SSatish Balay             xw[1] = x[1 + idx];
11649371c9d4SSatish Balay             xw[2] = x[2 + idx];
11659371c9d4SSatish Balay             xw[3] = x[3 + idx];
11669371c9d4SSatish Balay             xw[4] = x[4 + idx];
1167e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s, v, xw);
1168e48d15efSToby Isaac             v += 25;
1169e48d15efSToby Isaac           }
1170e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw, idiag, s);
11719371c9d4SSatish Balay           x[i2] += xw[0];
11729371c9d4SSatish Balay           x[i2 + 1] += xw[1];
11739371c9d4SSatish Balay           x[i2 + 2] += xw[2];
11749371c9d4SSatish Balay           x[i2 + 3] += xw[3];
11759371c9d4SSatish Balay           x[i2 + 4] += xw[4];
1176e48d15efSToby Isaac           idiag -= 25;
1177e48d15efSToby Isaac           i2 -= 5;
1178e48d15efSToby Isaac         }
1179e48d15efSToby Isaac         break;
1180e48d15efSToby Isaac       case 6:
1181e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1182e48d15efSToby Isaac           v    = aa + 36 * ai[i];
1183e48d15efSToby Isaac           vi   = aj + ai[i];
1184e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
11859371c9d4SSatish Balay           s[0] = b[i2];
11869371c9d4SSatish Balay           s[1] = b[i2 + 1];
11879371c9d4SSatish Balay           s[2] = b[i2 + 2];
11889371c9d4SSatish Balay           s[3] = b[i2 + 3];
11899371c9d4SSatish Balay           s[4] = b[i2 + 4];
11909371c9d4SSatish Balay           s[5] = b[i2 + 5];
1191e48d15efSToby Isaac           while (nz--) {
1192e48d15efSToby Isaac             idx   = 6 * (*vi++);
11939371c9d4SSatish Balay             xw[0] = x[idx];
11949371c9d4SSatish Balay             xw[1] = x[1 + idx];
11959371c9d4SSatish Balay             xw[2] = x[2 + idx];
11969371c9d4SSatish Balay             xw[3] = x[3 + idx];
11979371c9d4SSatish Balay             xw[4] = x[4 + idx];
11989371c9d4SSatish Balay             xw[5] = x[5 + idx];
1199e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s, v, xw);
1200e48d15efSToby Isaac             v += 36;
1201e48d15efSToby Isaac           }
1202e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw, idiag, s);
12039371c9d4SSatish Balay           x[i2] += xw[0];
12049371c9d4SSatish Balay           x[i2 + 1] += xw[1];
12059371c9d4SSatish Balay           x[i2 + 2] += xw[2];
12069371c9d4SSatish Balay           x[i2 + 3] += xw[3];
12079371c9d4SSatish Balay           x[i2 + 4] += xw[4];
12089371c9d4SSatish Balay           x[i2 + 5] += xw[5];
1209e48d15efSToby Isaac           idiag -= 36;
1210e48d15efSToby Isaac           i2 -= 6;
1211e48d15efSToby Isaac         }
1212e48d15efSToby Isaac         break;
1213e48d15efSToby Isaac       case 7:
1214e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1215e48d15efSToby Isaac           v    = aa + 49 * ai[i];
1216e48d15efSToby Isaac           vi   = aj + ai[i];
1217e48d15efSToby Isaac           nz   = ai[i + 1] - ai[i];
12189371c9d4SSatish Balay           s[0] = b[i2];
12199371c9d4SSatish Balay           s[1] = b[i2 + 1];
12209371c9d4SSatish Balay           s[2] = b[i2 + 2];
12219371c9d4SSatish Balay           s[3] = b[i2 + 3];
12229371c9d4SSatish Balay           s[4] = b[i2 + 4];
12239371c9d4SSatish Balay           s[5] = b[i2 + 5];
12249371c9d4SSatish Balay           s[6] = b[i2 + 6];
1225e48d15efSToby Isaac           while (nz--) {
1226e48d15efSToby Isaac             idx   = 7 * (*vi++);
12279371c9d4SSatish Balay             xw[0] = x[idx];
12289371c9d4SSatish Balay             xw[1] = x[1 + idx];
12299371c9d4SSatish Balay             xw[2] = x[2 + idx];
12309371c9d4SSatish Balay             xw[3] = x[3 + idx];
12319371c9d4SSatish Balay             xw[4] = x[4 + idx];
12329371c9d4SSatish Balay             xw[5] = x[5 + idx];
12339371c9d4SSatish Balay             xw[6] = x[6 + idx];
1234e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s, v, xw);
1235e48d15efSToby Isaac             v += 49;
1236e48d15efSToby Isaac           }
1237e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw, idiag, s);
12389371c9d4SSatish Balay           x[i2] += xw[0];
12399371c9d4SSatish Balay           x[i2 + 1] += xw[1];
12409371c9d4SSatish Balay           x[i2 + 2] += xw[2];
12419371c9d4SSatish Balay           x[i2 + 3] += xw[3];
12429371c9d4SSatish Balay           x[i2 + 4] += xw[4];
12439371c9d4SSatish Balay           x[i2 + 5] += xw[5];
12449371c9d4SSatish Balay           x[i2 + 6] += xw[6];
1245e48d15efSToby Isaac           idiag -= 49;
1246e48d15efSToby Isaac           i2 -= 7;
1247e48d15efSToby Isaac         }
1248e48d15efSToby Isaac         break;
1249e48d15efSToby Isaac       default:
1250e48d15efSToby Isaac         for (i = m - 1; i >= 0; i--) {
1251e48d15efSToby Isaac           v  = aa + bs2 * ai[i];
1252e48d15efSToby Isaac           vi = aj + ai[i];
1253e48d15efSToby Isaac           nz = ai[i + 1] - ai[i];
1254e48d15efSToby Isaac 
12559566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w, b + i2, bs));
1256e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
1257e48d15efSToby Isaac           workt = work;
1258e48d15efSToby Isaac           for (j = 0; j < nz; j++) {
12599566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt, x + bs * (*vi++), bs));
1260e48d15efSToby Isaac             workt += bs;
1261e48d15efSToby Isaac           }
1262e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs, bs * nz, w, v, work);
1263e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs, bs, w, idiag, x + i2);
1264e48d15efSToby Isaac 
1265e48d15efSToby Isaac           idiag -= bs2;
1266e48d15efSToby Isaac           i2 -= bs;
1267e48d15efSToby Isaac         }
1268e48d15efSToby Isaac         break;
1269e48d15efSToby Isaac       }
12709566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * bs2 * (a->nz)));
1271e48d15efSToby Isaac     }
1272e48d15efSToby Isaac   }
12739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx, &x));
12749566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb, &b));
12753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1276de80f912SBarry Smith }
1277de80f912SBarry Smith 
1278af674e45SBarry Smith /*
127981824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
1280af674e45SBarry Smith */
1281af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1282af674e45SBarry Smith   #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
1283af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1284af674e45SBarry Smith   #define matsetvaluesblocked4_ matsetvaluesblocked4
1285af674e45SBarry Smith #endif
1286af674e45SBarry Smith 
1287d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesblocked4_(Mat *AA, PetscInt *mm, const PetscInt im[], PetscInt *nn, const PetscInt in[], const PetscScalar v[])
1288d71ae5a4SJacob Faibussowitsch {
1289af674e45SBarry Smith   Mat                A = *AA;
1290af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
1291c1ac3661SBarry Smith   PetscInt          *rp, k, low, high, t, ii, jj, row, nrow, i, col, l, N, m = *mm, n = *nn;
1292c1ac3661SBarry Smith   PetscInt          *ai = a->i, *ailen = a->ilen;
129317ec6a02SBarry Smith   PetscInt          *aj = a->j, stepval, lastcol = -1;
1294f15d580aSBarry Smith   const PetscScalar *value = v;
12954bb09213Spetsc   MatScalar         *ap, *aa = a->a, *bap;
1296af674e45SBarry Smith 
1297af674e45SBarry Smith   PetscFunctionBegin;
1298ce94432eSBarry Smith   if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Can only be called with a block size of 4");
1299af674e45SBarry Smith   stepval = (n - 1) * 4;
1300af674e45SBarry Smith   for (k = 0; k < m; k++) { /* loop over added rows */
1301af674e45SBarry Smith     row  = im[k];
1302af674e45SBarry Smith     rp   = aj + ai[row];
1303af674e45SBarry Smith     ap   = aa + 16 * ai[row];
1304af674e45SBarry Smith     nrow = ailen[row];
1305af674e45SBarry Smith     low  = 0;
130617ec6a02SBarry Smith     high = nrow;
1307af674e45SBarry Smith     for (l = 0; l < n; l++) { /* loop over added columns */
1308af674e45SBarry Smith       col = in[l];
1309db4deed7SKarl Rupp       if (col <= lastcol) low = 0;
1310db4deed7SKarl Rupp       else high = nrow;
131117ec6a02SBarry Smith       lastcol = col;
13121e3347e8SBarry Smith       value   = v + k * (stepval + 4 + l) * 4;
1313af674e45SBarry Smith       while (high - low > 7) {
1314af674e45SBarry Smith         t = (low + high) / 2;
1315af674e45SBarry Smith         if (rp[t] > col) high = t;
1316af674e45SBarry Smith         else low = t;
1317af674e45SBarry Smith       }
1318af674e45SBarry Smith       for (i = low; i < high; i++) {
1319af674e45SBarry Smith         if (rp[i] > col) break;
1320af674e45SBarry Smith         if (rp[i] == col) {
1321af674e45SBarry Smith           bap = ap + 16 * i;
1322af674e45SBarry Smith           for (ii = 0; ii < 4; ii++, value += stepval) {
1323ad540459SPierre Jolivet             for (jj = ii; jj < 16; jj += 4) bap[jj] += *value++;
1324af674e45SBarry Smith           }
1325af674e45SBarry Smith           goto noinsert2;
1326af674e45SBarry Smith         }
1327af674e45SBarry Smith       }
1328af674e45SBarry Smith       N = nrow++ - 1;
132917ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
1330af674e45SBarry Smith       /* shift up all the later entries in this row */
1331af674e45SBarry Smith       for (ii = N; ii >= i; ii--) {
1332af674e45SBarry Smith         rp[ii + 1] = rp[ii];
13339566063dSJacob Faibussowitsch         PetscCallVoid(PetscArraycpy(ap + 16 * (ii + 1), ap + 16 * (ii), 16));
1334af674e45SBarry Smith       }
133548a46eb9SPierre Jolivet       if (N >= i) PetscCallVoid(PetscArrayzero(ap + 16 * i, 16));
1336af674e45SBarry Smith       rp[i] = col;
1337af674e45SBarry Smith       bap   = ap + 16 * i;
1338af674e45SBarry Smith       for (ii = 0; ii < 4; ii++, value += stepval) {
1339ad540459SPierre Jolivet         for (jj = ii; jj < 16; jj += 4) bap[jj] = *value++;
1340af674e45SBarry Smith       }
1341af674e45SBarry Smith     noinsert2:;
1342af674e45SBarry Smith       low = i;
1343af674e45SBarry Smith     }
1344af674e45SBarry Smith     ailen[row] = nrow;
1345af674e45SBarry Smith   }
1346be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1347af674e45SBarry Smith }
1348af674e45SBarry Smith 
1349af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1350af674e45SBarry Smith   #define matsetvalues4_ MATSETVALUES4
1351af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1352af674e45SBarry Smith   #define matsetvalues4_ matsetvalues4
1353af674e45SBarry Smith #endif
1354af674e45SBarry Smith 
1355d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvalues4_(Mat *AA, PetscInt *mm, PetscInt *im, PetscInt *nn, PetscInt *in, PetscScalar *v)
1356d71ae5a4SJacob Faibussowitsch {
1357af674e45SBarry Smith   Mat          A = *AA;
1358af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
1359580bdb30SBarry Smith   PetscInt    *rp, k, low, high, t, row, nrow, i, col, l, N, n = *nn, m = *mm;
1360c1ac3661SBarry Smith   PetscInt    *ai = a->i, *ailen = a->ilen;
1361c1ac3661SBarry Smith   PetscInt    *aj = a->j, brow, bcol;
136217ec6a02SBarry Smith   PetscInt     ridx, cidx, lastcol = -1;
1363af674e45SBarry Smith   MatScalar   *ap, value, *aa      = a->a, *bap;
1364af674e45SBarry Smith 
1365af674e45SBarry Smith   PetscFunctionBegin;
1366af674e45SBarry Smith   for (k = 0; k < m; k++) { /* loop over added rows */
13679371c9d4SSatish Balay     row  = im[k];
13689371c9d4SSatish Balay     brow = row / 4;
1369af674e45SBarry Smith     rp   = aj + ai[brow];
1370af674e45SBarry Smith     ap   = aa + 16 * ai[brow];
1371af674e45SBarry Smith     nrow = ailen[brow];
1372af674e45SBarry Smith     low  = 0;
137317ec6a02SBarry Smith     high = nrow;
1374af674e45SBarry Smith     for (l = 0; l < n; l++) { /* loop over added columns */
13759371c9d4SSatish Balay       col   = in[l];
13769371c9d4SSatish Balay       bcol  = col / 4;
13779371c9d4SSatish Balay       ridx  = row % 4;
13789371c9d4SSatish Balay       cidx  = col % 4;
1379af674e45SBarry Smith       value = v[l + k * n];
1380db4deed7SKarl Rupp       if (col <= lastcol) low = 0;
1381db4deed7SKarl Rupp       else high = nrow;
138217ec6a02SBarry Smith       lastcol = col;
1383af674e45SBarry Smith       while (high - low > 7) {
1384af674e45SBarry Smith         t = (low + high) / 2;
1385af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1386af674e45SBarry Smith         else low = t;
1387af674e45SBarry Smith       }
1388af674e45SBarry Smith       for (i = low; i < high; i++) {
1389af674e45SBarry Smith         if (rp[i] > bcol) break;
1390af674e45SBarry Smith         if (rp[i] == bcol) {
1391af674e45SBarry Smith           bap = ap + 16 * i + 4 * cidx + ridx;
1392af674e45SBarry Smith           *bap += value;
1393af674e45SBarry Smith           goto noinsert1;
1394af674e45SBarry Smith         }
1395af674e45SBarry Smith       }
1396af674e45SBarry Smith       N = nrow++ - 1;
139717ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1398af674e45SBarry Smith       /* shift up all the later entries in this row */
13999566063dSJacob Faibussowitsch       PetscCallVoid(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
14009566063dSJacob Faibussowitsch       PetscCallVoid(PetscArraymove(ap + 16 * i + 16, ap + 16 * i, 16 * (N - i + 1)));
14019566063dSJacob Faibussowitsch       PetscCallVoid(PetscArrayzero(ap + 16 * i, 16));
1402af674e45SBarry Smith       rp[i]                        = bcol;
1403af674e45SBarry Smith       ap[16 * i + 4 * cidx + ridx] = value;
1404af674e45SBarry Smith     noinsert1:;
1405af674e45SBarry Smith       low = i;
1406af674e45SBarry Smith     }
1407af674e45SBarry Smith     ailen[brow] = nrow;
1408af674e45SBarry Smith   }
1409be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1410af674e45SBarry Smith }
1411af674e45SBarry Smith 
1412be5855fcSBarry Smith /*
1413be5855fcSBarry Smith      Checks for missing diagonals
1414be5855fcSBarry Smith */
1415d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A, PetscBool *missing, PetscInt *d)
1416d71ae5a4SJacob Faibussowitsch {
1417be5855fcSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
14187734d3b5SMatthew G. Knepley   PetscInt    *diag, *ii = a->i, i;
1419be5855fcSBarry Smith 
1420be5855fcSBarry Smith   PetscFunctionBegin;
14219566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqBAIJ(A));
14222af78befSBarry Smith   *missing = PETSC_FALSE;
14237734d3b5SMatthew G. Knepley   if (A->rmap->n > 0 && !ii) {
14242efa7f71SHong Zhang     *missing = PETSC_TRUE;
14252efa7f71SHong Zhang     if (d) *d = 0;
14269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n"));
14272efa7f71SHong Zhang   } else {
142801445905SHong Zhang     PetscInt n;
142901445905SHong Zhang     n    = PetscMin(a->mbs, a->nbs);
1430883fce79SBarry Smith     diag = a->diag;
143101445905SHong Zhang     for (i = 0; i < n; i++) {
14327734d3b5SMatthew G. Knepley       if (diag[i] >= ii[i + 1]) {
14332af78befSBarry Smith         *missing = PETSC_TRUE;
14342af78befSBarry Smith         if (d) *d = i;
14359566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Matrix is missing block diagonal number %" PetscInt_FMT "\n", i));
1436358d2f5dSShri Abhyankar         break;
14372efa7f71SHong Zhang       }
1438be5855fcSBarry Smith     }
1439be5855fcSBarry Smith   }
14403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1441be5855fcSBarry Smith }
1442be5855fcSBarry Smith 
1443d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1444d71ae5a4SJacob Faibussowitsch {
1445de6a44a3SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
144609f38230SBarry Smith   PetscInt     i, j, m = a->mbs;
1447de6a44a3SBarry Smith 
14483a40ed3dSBarry Smith   PetscFunctionBegin;
144909f38230SBarry Smith   if (!a->diag) {
14509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &a->diag));
14514fd072dbSBarry Smith     a->free_diag = PETSC_TRUE;
145209f38230SBarry Smith   }
14537fc0212eSBarry Smith   for (i = 0; i < m; i++) {
145409f38230SBarry Smith     a->diag[i] = a->i[i + 1];
1455de6a44a3SBarry Smith     for (j = a->i[i]; j < a->i[i + 1]; j++) {
1456de6a44a3SBarry Smith       if (a->j[j] == i) {
145709f38230SBarry Smith         a->diag[i] = j;
1458de6a44a3SBarry Smith         break;
1459de6a44a3SBarry Smith       }
1460de6a44a3SBarry Smith     }
1461de6a44a3SBarry Smith   }
14623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1463de6a44a3SBarry Smith }
14642593348eSBarry Smith 
1465d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *inia[], const PetscInt *inja[], PetscBool *done)
1466d71ae5a4SJacob Faibussowitsch {
14673b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
14681a83f524SJed Brown   PetscInt     i, j, n = a->mbs, nz = a->i[n], *tia, *tja, bs = A->rmap->bs, k, l, cnt;
14691a83f524SJed Brown   PetscInt   **ia = (PetscInt **)inia, **ja = (PetscInt **)inja;
14703b2fbd54SBarry Smith 
14713a40ed3dSBarry Smith   PetscFunctionBegin;
14723b2fbd54SBarry Smith   *nn = n;
14733ba16761SJacob Faibussowitsch   if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
14743b2fbd54SBarry Smith   if (symmetric) {
14759566063dSJacob Faibussowitsch     PetscCall(MatToSymmetricIJ_SeqAIJ(n, a->i, a->j, PETSC_TRUE, 0, 0, &tia, &tja));
1476553b3c51SBarry Smith     nz = tia[n];
14773b2fbd54SBarry Smith   } else {
14789371c9d4SSatish Balay     tia = a->i;
14799371c9d4SSatish Balay     tja = a->j;
14803b2fbd54SBarry Smith   }
14813b2fbd54SBarry Smith 
1482ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1483ecc77c7aSBarry Smith     (*nn) *= bs;
14848f7157efSSatish Balay     /* malloc & create the natural set of indices */
14859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1((n + 1) * bs, ia));
14869985e31cSBarry Smith     if (n) {
14872462f5fdSStefano Zampini       (*ia)[0] = oshift;
1488ad540459SPierre Jolivet       for (j = 1; j < bs; j++) (*ia)[j] = (tia[1] - tia[0]) * bs + (*ia)[j - 1];
14899985e31cSBarry Smith     }
1490ecc77c7aSBarry Smith 
1491ecc77c7aSBarry Smith     for (i = 1; i < n; i++) {
1492ecc77c7aSBarry Smith       (*ia)[i * bs] = (tia[i] - tia[i - 1]) * bs + (*ia)[i * bs - 1];
1493ad540459SPierre Jolivet       for (j = 1; j < bs; j++) (*ia)[i * bs + j] = (tia[i + 1] - tia[i]) * bs + (*ia)[i * bs + j - 1];
14948f7157efSSatish Balay     }
1495ad540459SPierre Jolivet     if (n) (*ia)[n * bs] = (tia[n] - tia[n - 1]) * bs + (*ia)[n * bs - 1];
1496ecc77c7aSBarry Smith 
14971a83f524SJed Brown     if (inja) {
14989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nz * bs * bs, ja));
14999985e31cSBarry Smith       cnt = 0;
15009985e31cSBarry Smith       for (i = 0; i < n; i++) {
15019985e31cSBarry Smith         for (j = 0; j < bs; j++) {
15029985e31cSBarry Smith           for (k = tia[i]; k < tia[i + 1]; k++) {
1503ad540459SPierre Jolivet             for (l = 0; l < bs; l++) (*ja)[cnt++] = bs * tja[k] + l;
15049985e31cSBarry Smith           }
15059985e31cSBarry Smith         }
15069985e31cSBarry Smith       }
15079985e31cSBarry Smith     }
15089985e31cSBarry Smith 
15098f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
15109566063dSJacob Faibussowitsch       PetscCall(PetscFree(tia));
15119566063dSJacob Faibussowitsch       PetscCall(PetscFree(tja));
15128f7157efSSatish Balay     }
1513f6d58c54SBarry Smith   } else if (oshift == 1) {
1514715a17b5SBarry Smith     if (symmetric) {
1515a2ea699eSBarry Smith       nz = tia[A->rmap->n / bs];
1516715a17b5SBarry Smith       /*  add 1 to i and j indices */
1517715a17b5SBarry Smith       for (i = 0; i < A->rmap->n / bs + 1; i++) tia[i] = tia[i] + 1;
1518715a17b5SBarry Smith       *ia = tia;
1519715a17b5SBarry Smith       if (ja) {
1520715a17b5SBarry Smith         for (i = 0; i < nz; i++) tja[i] = tja[i] + 1;
1521715a17b5SBarry Smith         *ja = tja;
1522715a17b5SBarry Smith       }
1523715a17b5SBarry Smith     } else {
1524a2ea699eSBarry Smith       nz = a->i[A->rmap->n / bs];
1525f6d58c54SBarry Smith       /* malloc space and  add 1 to i and j indices */
15269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(A->rmap->n / bs + 1, ia));
1527f6d58c54SBarry Smith       for (i = 0; i < A->rmap->n / bs + 1; i++) (*ia)[i] = a->i[i] + 1;
1528f6d58c54SBarry Smith       if (ja) {
15299566063dSJacob Faibussowitsch         PetscCall(PetscMalloc1(nz, ja));
1530f6d58c54SBarry Smith         for (i = 0; i < nz; i++) (*ja)[i] = a->j[i] + 1;
1531f6d58c54SBarry Smith       }
1532715a17b5SBarry Smith     }
15338f7157efSSatish Balay   } else {
15348f7157efSSatish Balay     *ia = tia;
1535ecc77c7aSBarry Smith     if (ja) *ja = tja;
15368f7157efSSatish Balay   }
15373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15383b2fbd54SBarry Smith }
15393b2fbd54SBarry Smith 
1540d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
1541d71ae5a4SJacob Faibussowitsch {
15423a40ed3dSBarry Smith   PetscFunctionBegin;
15433ba16761SJacob Faibussowitsch   if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
1544715a17b5SBarry Smith   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
15459566063dSJacob Faibussowitsch     PetscCall(PetscFree(*ia));
15469566063dSJacob Faibussowitsch     if (ja) PetscCall(PetscFree(*ja));
15473b2fbd54SBarry Smith   }
15483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15493b2fbd54SBarry Smith }
15503b2fbd54SBarry Smith 
1551d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
1552d71ae5a4SJacob Faibussowitsch {
15532d61bbb3SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
15542d61bbb3SSatish Balay 
1555433994e6SBarry Smith   PetscFunctionBegin;
1556b4e2f619SBarry Smith   if (A->hash_active) {
1557b4e2f619SBarry Smith     PetscInt bs;
1558e3c72094SPierre Jolivet     A->ops[0] = a->cops;
1559b4e2f619SBarry Smith     PetscCall(PetscHMapIJVDestroy(&a->ht));
1560b4e2f619SBarry Smith     PetscCall(MatGetBlockSize(A, &bs));
1561b4e2f619SBarry Smith     if (bs > 1) PetscCall(PetscHSetIJDestroy(&a->bht));
1562b4e2f619SBarry Smith     PetscCall(PetscFree(a->dnz));
1563b4e2f619SBarry Smith     PetscCall(PetscFree(a->bdnz));
1564b4e2f619SBarry Smith     A->hash_active = PETSC_FALSE;
1565b4e2f619SBarry Smith   }
15663ba16761SJacob Faibussowitsch   PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->N, A->cmap->n, a->nz));
15679566063dSJacob Faibussowitsch   PetscCall(MatSeqXAIJFreeAIJ(A, &a->a, &a->j, &a->i));
15689566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
15699566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
15709566063dSJacob Faibussowitsch   if (a->free_diag) PetscCall(PetscFree(a->diag));
15719566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->idiag));
15729566063dSJacob Faibussowitsch   if (a->free_imax_ilen) PetscCall(PetscFree2(a->imax, a->ilen));
15739566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->solve_work));
15749566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->mult_work));
15759566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sor_workt));
15769566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sor_work));
15779566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->saved_values));
15799566063dSJacob Faibussowitsch   PetscCall(PetscFree2(a->compressedrow.i, a->compressedrow.rindex));
1580c4319e64SHong Zhang 
15819566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&a->sbaijMat));
15829566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&a->parent));
15839566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->data));
1584901853e0SKris Buschelman 
15859566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
15869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJGetArray_C", NULL));
15879566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJRestoreArray_C", NULL));
15889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
15899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
15909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJSetColumnIndices_C", NULL));
15919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_seqaij_C", NULL));
15929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_seqsbaij_C", NULL));
15939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJSetPreallocation_C", NULL));
15949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqBAIJSetPreallocationCSR_C", NULL));
15959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_seqbstrm_C", NULL));
15969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatIsTranspose_C", NULL));
15977ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
15989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_hypre_C", NULL));
15997ea3e4caSstefano_zampini #endif
16009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqbaij_is_C", NULL));
16012e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL));
16023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16032d61bbb3SSatish Balay }
16042d61bbb3SSatish Balay 
160566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_SeqBAIJ(Mat A, MatOption op, PetscBool flg)
1606d71ae5a4SJacob Faibussowitsch {
16072d61bbb3SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
16082d61bbb3SSatish Balay 
16092d61bbb3SSatish Balay   PetscFunctionBegin;
1610aa275fccSKris Buschelman   switch (op) {
1611d71ae5a4SJacob Faibussowitsch   case MAT_ROW_ORIENTED:
1612d71ae5a4SJacob Faibussowitsch     a->roworiented = flg;
1613d71ae5a4SJacob Faibussowitsch     break;
1614d71ae5a4SJacob Faibussowitsch   case MAT_KEEP_NONZERO_PATTERN:
1615d71ae5a4SJacob Faibussowitsch     a->keepnonzeropattern = flg;
1616d71ae5a4SJacob Faibussowitsch     break;
1617d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATIONS:
1618d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? 0 : 1);
1619d71ae5a4SJacob Faibussowitsch     break;
1620d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATION_ERR:
1621d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -1 : 0);
1622d71ae5a4SJacob Faibussowitsch     break;
1623d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1624d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -2 : 0);
1625d71ae5a4SJacob Faibussowitsch     break;
1626d71ae5a4SJacob Faibussowitsch   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1627d71ae5a4SJacob Faibussowitsch     a->nounused = (flg ? -1 : 0);
1628d71ae5a4SJacob Faibussowitsch     break;
1629d71ae5a4SJacob Faibussowitsch   default:
1630888c827cSStefano Zampini     break;
16312d61bbb3SSatish Balay   }
16323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16332d61bbb3SSatish Balay }
16342d61bbb3SSatish Balay 
163552768537SHong Zhang /* used for both SeqBAIJ and SeqSBAIJ matrices */
1636d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqBAIJ_private(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v, PetscInt *ai, PetscInt *aj, PetscScalar *aa)
1637d71ae5a4SJacob Faibussowitsch {
163852768537SHong Zhang   PetscInt     itmp, i, j, k, M, bn, bp, *idx_i, bs, bs2;
163952768537SHong Zhang   MatScalar   *aa_i;
164087828ca2SBarry Smith   PetscScalar *v_i;
16412d61bbb3SSatish Balay 
16422d61bbb3SSatish Balay   PetscFunctionBegin;
1643d0f46423SBarry Smith   bs  = A->rmap->bs;
164452768537SHong Zhang   bs2 = bs * bs;
16455f80ce2aSJacob Faibussowitsch   PetscCheck(row >= 0 && row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row);
16462d61bbb3SSatish Balay 
16472d61bbb3SSatish Balay   bn  = row / bs; /* Block number */
16482d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
16492d61bbb3SSatish Balay   M   = ai[bn + 1] - ai[bn];
16502d61bbb3SSatish Balay   *nz = bs * M;
16512d61bbb3SSatish Balay 
16522d61bbb3SSatish Balay   if (v) {
1653f4259b30SLisandro Dalcin     *v = NULL;
16542d61bbb3SSatish Balay     if (*nz) {
16559566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(*nz, v));
16562d61bbb3SSatish Balay       for (i = 0; i < M; i++) { /* for each block in the block row */
16572d61bbb3SSatish Balay         v_i  = *v + i * bs;
16582d61bbb3SSatish Balay         aa_i = aa + bs2 * (ai[bn] + i);
165926fbe8dcSKarl Rupp         for (j = bp, k = 0; j < bs2; j += bs, k++) v_i[k] = aa_i[j];
16602d61bbb3SSatish Balay       }
16612d61bbb3SSatish Balay     }
16622d61bbb3SSatish Balay   }
16632d61bbb3SSatish Balay 
16642d61bbb3SSatish Balay   if (idx) {
1665f4259b30SLisandro Dalcin     *idx = NULL;
16662d61bbb3SSatish Balay     if (*nz) {
16679566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(*nz, idx));
16682d61bbb3SSatish Balay       for (i = 0; i < M; i++) { /* for each block in the block row */
16692d61bbb3SSatish Balay         idx_i = *idx + i * bs;
16702d61bbb3SSatish Balay         itmp  = bs * aj[ai[bn] + i];
167126fbe8dcSKarl Rupp         for (j = 0; j < bs; j++) idx_i[j] = itmp++;
16722d61bbb3SSatish Balay       }
16732d61bbb3SSatish Balay     }
16742d61bbb3SSatish Balay   }
16753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16762d61bbb3SSatish Balay }
16772d61bbb3SSatish Balay 
1678d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1679d71ae5a4SJacob Faibussowitsch {
168052768537SHong Zhang   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
168152768537SHong Zhang 
168252768537SHong Zhang   PetscFunctionBegin;
16839566063dSJacob Faibussowitsch   PetscCall(MatGetRow_SeqBAIJ_private(A, row, nz, idx, v, a->i, a->j, a->a));
16843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
168552768537SHong Zhang }
168652768537SHong Zhang 
1687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1688d71ae5a4SJacob Faibussowitsch {
16892d61bbb3SSatish Balay   PetscFunctionBegin;
16909566063dSJacob Faibussowitsch   if (idx) PetscCall(PetscFree(*idx));
16919566063dSJacob Faibussowitsch   if (v) PetscCall(PetscFree(*v));
16923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16932d61bbb3SSatish Balay }
16942d61bbb3SSatish Balay 
169566976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_SeqBAIJ(Mat A, MatReuse reuse, Mat *B)
1696d71ae5a4SJacob Faibussowitsch {
169720e84f26SHong Zhang   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *at;
16982d61bbb3SSatish Balay   Mat          C;
169920e84f26SHong Zhang   PetscInt     i, j, k, *aj = a->j, *ai = a->i, bs = A->rmap->bs, mbs = a->mbs, nbs = a->nbs, *atfill;
170020e84f26SHong Zhang   PetscInt     bs2 = a->bs2, *ati, *atj, anzj, kr;
170120e84f26SHong Zhang   MatScalar   *ata, *aa = a->a;
17022d61bbb3SSatish Balay 
17032d61bbb3SSatish Balay   PetscFunctionBegin;
17047fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
17059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1 + nbs, &atfill));
1706cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
170720e84f26SHong Zhang     for (i = 0; i < ai[mbs]; i++) atfill[aj[i]] += 1; /* count num of non-zeros in row aj[i] */
17082d61bbb3SSatish Balay 
17099566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &C));
17109566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(C, A->cmap->n, A->rmap->N, A->cmap->n, A->rmap->N));
17119566063dSJacob Faibussowitsch     PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
17129566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(C, bs, 0, atfill));
171320e84f26SHong Zhang 
171420e84f26SHong Zhang     at  = (Mat_SeqBAIJ *)C->data;
171520e84f26SHong Zhang     ati = at->i;
171620e84f26SHong Zhang     for (i = 0; i < nbs; i++) at->ilen[i] = at->imax[i] = ati[i + 1] - ati[i];
1717fc4dec0aSBarry Smith   } else {
1718fc4dec0aSBarry Smith     C   = *B;
171920e84f26SHong Zhang     at  = (Mat_SeqBAIJ *)C->data;
172020e84f26SHong Zhang     ati = at->i;
1721fc4dec0aSBarry Smith   }
1722fc4dec0aSBarry Smith 
172320e84f26SHong Zhang   atj = at->j;
172420e84f26SHong Zhang   ata = at->a;
172520e84f26SHong Zhang 
172620e84f26SHong Zhang   /* Copy ati into atfill so we have locations of the next free space in atj */
17279566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(atfill, ati, nbs));
172820e84f26SHong Zhang 
172920e84f26SHong Zhang   /* Walk through A row-wise and mark nonzero entries of A^T. */
17302d61bbb3SSatish Balay   for (i = 0; i < mbs; i++) {
173120e84f26SHong Zhang     anzj = ai[i + 1] - ai[i];
173220e84f26SHong Zhang     for (j = 0; j < anzj; j++) {
173320e84f26SHong Zhang       atj[atfill[*aj]] = i;
173420e84f26SHong Zhang       for (kr = 0; kr < bs; kr++) {
1735ad540459SPierre Jolivet         for (k = 0; k < bs; k++) ata[bs2 * atfill[*aj] + k * bs + kr] = *aa++;
17362d61bbb3SSatish Balay       }
173720e84f26SHong Zhang       atfill[*aj++] += 1;
173820e84f26SHong Zhang     }
173920e84f26SHong Zhang   }
17409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
17422d61bbb3SSatish Balay 
174320e84f26SHong Zhang   /* Clean up temporary space and complete requests. */
17449566063dSJacob Faibussowitsch   PetscCall(PetscFree(atfill));
174520e84f26SHong Zhang 
1746cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
174758b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->cmap->bs, A->rmap->bs));
17482d61bbb3SSatish Balay     *B = C;
17492d61bbb3SSatish Balay   } else {
17509566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &C));
17512d61bbb3SSatish Balay   }
17523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17532d61bbb3SSatish Balay }
17542d61bbb3SSatish Balay 
1755ff6a9541SJacob Faibussowitsch static PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A, Mat B, PetscReal tol, PetscBool *f)
1756d71ae5a4SJacob Faibussowitsch {
1757453d3561SHong Zhang   Mat Btrans;
1758453d3561SHong Zhang 
1759453d3561SHong Zhang   PetscFunctionBegin;
1760453d3561SHong Zhang   *f = PETSC_FALSE;
1761acd337a6SBarry Smith   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &Btrans));
17629566063dSJacob Faibussowitsch   PetscCall(MatEqual_SeqBAIJ(B, Btrans, f));
17639566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Btrans));
17643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1765453d3561SHong Zhang }
1766453d3561SHong Zhang 
1767618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */
1768d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqBAIJ_Binary(Mat mat, PetscViewer viewer)
1769d71ae5a4SJacob Faibussowitsch {
1770b51a4376SLisandro Dalcin   Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)mat->data;
1771b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, m, bs, nz, cnt, i, j, k, l;
1772b51a4376SLisandro Dalcin   PetscInt    *rowlens, *colidxs;
1773b51a4376SLisandro Dalcin   PetscScalar *matvals;
17742593348eSBarry Smith 
17753a40ed3dSBarry Smith   PetscFunctionBegin;
17769566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
17773b2fbd54SBarry Smith 
1778b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1779b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1780b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1781b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1782b51a4376SLisandro Dalcin   nz = bs * bs * A->nz;
17832593348eSBarry Smith 
1784b51a4376SLisandro Dalcin   /* write matrix header */
1785b51a4376SLisandro Dalcin   header[0] = MAT_FILE_CLASSID;
17869371c9d4SSatish Balay   header[1] = M;
17879371c9d4SSatish Balay   header[2] = N;
17889371c9d4SSatish Balay   header[3] = nz;
17899566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
17902593348eSBarry Smith 
1791b51a4376SLisandro Dalcin   /* store row lengths */
17929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1793b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
17949371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i]);
17959566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, rowlens, m, PETSC_INT));
17969566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1797b51a4376SLisandro Dalcin 
1798b51a4376SLisandro Dalcin   /* store column indices  */
17999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1800b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
1801b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++)
1802b51a4376SLisandro Dalcin       for (j = A->i[i]; j < A->i[i + 1]; j++)
18039371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[j] + l;
18045f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz);
18059566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, colidxs, nz, PETSC_INT));
18069566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
18072593348eSBarry Smith 
18082593348eSBarry Smith   /* store nonzero values */
18099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1810b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
1811b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++)
1812b51a4376SLisandro Dalcin       for (j = A->i[i]; j < A->i[i + 1]; j++)
18139371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * j + l) + k];
18145f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz);
18159566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, matvals, nz, PETSC_SCALAR));
18169566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1817ce6f0cecSBarry Smith 
1818b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
18199566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
18203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18212593348eSBarry Smith }
18222593348eSBarry Smith 
1823d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_ASCII_structonly(Mat A, PetscViewer viewer)
1824d71ae5a4SJacob Faibussowitsch {
18257dc0baabSHong Zhang   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
18267dc0baabSHong Zhang   PetscInt     i, bs = A->rmap->bs, k;
18277dc0baabSHong Zhang 
18287dc0baabSHong Zhang   PetscFunctionBegin;
18299566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
18307dc0baabSHong Zhang   for (i = 0; i < a->mbs; i++) {
18319566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT "-%" PetscInt_FMT ":", i * bs, i * bs + bs - 1));
183248a46eb9SPierre Jolivet     for (k = a->i[i]; k < a->i[i + 1]; k++) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT "-%" PetscInt_FMT ") ", bs * a->j[k], bs * a->j[k] + bs - 1));
18339566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
18347dc0baabSHong Zhang   }
18359566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
18363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18377dc0baabSHong Zhang }
18387dc0baabSHong Zhang 
1839d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A, PetscViewer viewer)
1840d71ae5a4SJacob Faibussowitsch {
1841b6490206SBarry Smith   Mat_SeqBAIJ      *a = (Mat_SeqBAIJ *)A->data;
1842d0f46423SBarry Smith   PetscInt          i, j, bs = A->rmap->bs, k, l, bs2 = a->bs2;
1843f3ef73ceSBarry Smith   PetscViewerFormat format;
18442593348eSBarry Smith 
18453a40ed3dSBarry Smith   PetscFunctionBegin;
18467dc0baabSHong Zhang   if (A->structure_only) {
18479566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_ASCII_structonly(A, viewer));
18483ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
18497dc0baabSHong Zhang   }
18507dc0baabSHong Zhang 
18519566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
1852456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
18539566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
1854fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1855ade3a672SBarry Smith     const char *matname;
1856bcd9e38bSBarry Smith     Mat         aij;
18579566063dSJacob Faibussowitsch     PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &aij));
18589566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)A, &matname));
18599566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij, matname));
18609566063dSJacob Faibussowitsch     PetscCall(MatView(aij, viewer));
18619566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&aij));
186204929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
18633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1864fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
18659566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
186644cd7ae7SLois Curfman McInnes     for (i = 0; i < a->mbs; i++) {
186744cd7ae7SLois Curfman McInnes       for (j = 0; j < bs; j++) {
18689566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i * bs + j));
186944cd7ae7SLois Curfman McInnes         for (k = a->i[i]; k < a->i[i + 1]; k++) {
187044cd7ae7SLois Curfman McInnes           for (l = 0; l < bs; l++) {
1871aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
18720e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) > 0.0 && PetscRealPart(a->a[bs2 * k + l * bs + j]) != 0.0) {
18739371c9d4SSatish Balay               PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %gi) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), (double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
18740e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) < 0.0 && PetscRealPart(a->a[bs2 * k + l * bs + j]) != 0.0) {
18759371c9d4SSatish Balay               PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %gi) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), -(double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
18760e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2 * k + l * bs + j]) != 0.0) {
18779566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j])));
18780ef38995SBarry Smith             }
187944cd7ae7SLois Curfman McInnes #else
188048a46eb9SPierre Jolivet             if (a->a[bs2 * k + l * bs + j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)a->a[bs2 * k + l * bs + j]));
188144cd7ae7SLois Curfman McInnes #endif
188244cd7ae7SLois Curfman McInnes           }
188344cd7ae7SLois Curfman McInnes         }
18849566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
188544cd7ae7SLois Curfman McInnes       }
188644cd7ae7SLois Curfman McInnes     }
18879566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
18880ef38995SBarry Smith   } else {
18899566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1890b6490206SBarry Smith     for (i = 0; i < a->mbs; i++) {
1891b6490206SBarry Smith       for (j = 0; j < bs; j++) {
18929566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i * bs + j));
1893b6490206SBarry Smith         for (k = a->i[i]; k < a->i[i + 1]; k++) {
1894b6490206SBarry Smith           for (l = 0; l < bs; l++) {
1895aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
18960e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) > 0.0) {
18979371c9d4SSatish Balay               PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), (double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
18980e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) < 0.0) {
18999371c9d4SSatish Balay               PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), -(double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
19000ef38995SBarry Smith             } else {
19019566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j])));
190288685aaeSLois Curfman McInnes             }
190388685aaeSLois Curfman McInnes #else
19049566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)a->a[bs2 * k + l * bs + j]));
190588685aaeSLois Curfman McInnes #endif
19062593348eSBarry Smith           }
19072593348eSBarry Smith         }
19089566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
19092593348eSBarry Smith       }
19102593348eSBarry Smith     }
19119566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1912b6490206SBarry Smith   }
19139566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
19143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19152593348eSBarry Smith }
19162593348eSBarry Smith 
19179804daf3SBarry Smith #include <petscdraw.h>
1918d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw, void *Aa)
1919d71ae5a4SJacob Faibussowitsch {
192077ed5343SBarry Smith   Mat               A = (Mat)Aa;
19213270192aSSatish Balay   Mat_SeqBAIJ      *a = (Mat_SeqBAIJ *)A->data;
19226497c311SBarry Smith   PetscInt          row, i, j, k, l, mbs = a->mbs, bs = A->rmap->bs, bs2 = a->bs2;
19230e6d2581SBarry Smith   PetscReal         xl, yl, xr, yr, x_l, x_r, y_l, y_r;
19243f1db9ecSBarry Smith   MatScalar        *aa;
1925b0a32e0cSBarry Smith   PetscViewer       viewer;
1926b3e7f47fSJed Brown   PetscViewerFormat format;
19276497c311SBarry Smith   int               color;
19283270192aSSatish Balay 
19293a40ed3dSBarry Smith   PetscFunctionBegin;
19309566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
19319566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
19329566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
193377ed5343SBarry Smith 
19343270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1935b3e7f47fSJed Brown 
1936b3e7f47fSJed Brown   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1937d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1938383922c3SLisandro Dalcin     /* Blue for negative, Cyan for zero and  Red for positive */
1939b0a32e0cSBarry Smith     color = PETSC_DRAW_BLUE;
19403270192aSSatish Balay     for (i = 0, row = 0; i < mbs; i++, row += bs) {
19413270192aSSatish Balay       for (j = a->i[i]; j < a->i[i + 1]; j++) {
19429371c9d4SSatish Balay         y_l = A->rmap->N - row - 1.0;
19439371c9d4SSatish Balay         y_r = y_l + 1.0;
19449371c9d4SSatish Balay         x_l = a->j[j] * bs;
19459371c9d4SSatish Balay         x_r = x_l + 1.0;
19463270192aSSatish Balay         aa  = a->a + j * bs2;
19473270192aSSatish Balay         for (k = 0; k < bs; k++) {
19483270192aSSatish Balay           for (l = 0; l < bs; l++) {
19490e6d2581SBarry Smith             if (PetscRealPart(*aa++) >= 0.) continue;
19509566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
19513270192aSSatish Balay           }
19523270192aSSatish Balay         }
19533270192aSSatish Balay       }
19543270192aSSatish Balay     }
1955b0a32e0cSBarry Smith     color = PETSC_DRAW_CYAN;
19563270192aSSatish Balay     for (i = 0, row = 0; i < mbs; i++, row += bs) {
19573270192aSSatish Balay       for (j = a->i[i]; j < a->i[i + 1]; j++) {
19589371c9d4SSatish Balay         y_l = A->rmap->N - row - 1.0;
19599371c9d4SSatish Balay         y_r = y_l + 1.0;
19609371c9d4SSatish Balay         x_l = a->j[j] * bs;
19619371c9d4SSatish Balay         x_r = x_l + 1.0;
19623270192aSSatish Balay         aa  = a->a + j * bs2;
19633270192aSSatish Balay         for (k = 0; k < bs; k++) {
19643270192aSSatish Balay           for (l = 0; l < bs; l++) {
19650e6d2581SBarry Smith             if (PetscRealPart(*aa++) != 0.) continue;
19669566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
19673270192aSSatish Balay           }
19683270192aSSatish Balay         }
19693270192aSSatish Balay       }
19703270192aSSatish Balay     }
1971b0a32e0cSBarry Smith     color = PETSC_DRAW_RED;
19723270192aSSatish Balay     for (i = 0, row = 0; i < mbs; i++, row += bs) {
19733270192aSSatish Balay       for (j = a->i[i]; j < a->i[i + 1]; j++) {
19749371c9d4SSatish Balay         y_l = A->rmap->N - row - 1.0;
19759371c9d4SSatish Balay         y_r = y_l + 1.0;
19769371c9d4SSatish Balay         x_l = a->j[j] * bs;
19779371c9d4SSatish Balay         x_r = x_l + 1.0;
19783270192aSSatish Balay         aa  = a->a + j * bs2;
19793270192aSSatish Balay         for (k = 0; k < bs; k++) {
19803270192aSSatish Balay           for (l = 0; l < bs; l++) {
19810e6d2581SBarry Smith             if (PetscRealPart(*aa++) <= 0.) continue;
19829566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
19833270192aSSatish Balay           }
19843270192aSSatish Balay         }
19853270192aSSatish Balay       }
19863270192aSSatish Balay     }
1987d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1988b3e7f47fSJed Brown   } else {
1989b3e7f47fSJed Brown     /* use contour shading to indicate magnitude of values */
1990b3e7f47fSJed Brown     /* first determine max of all nonzero values */
1991b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1992b3e7f47fSJed Brown     PetscDraw popup;
1993b3e7f47fSJed Brown 
1994b3e7f47fSJed Brown     for (i = 0; i < a->nz * a->bs2; i++) {
1995b3e7f47fSJed Brown       if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]);
1996b3e7f47fSJed Brown     }
1997383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
19989566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
19999566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, 0.0, maxv));
2000383922c3SLisandro Dalcin 
2001d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
2002b3e7f47fSJed Brown     for (i = 0, row = 0; i < mbs; i++, row += bs) {
2003b3e7f47fSJed Brown       for (j = a->i[i]; j < a->i[i + 1]; j++) {
20049371c9d4SSatish Balay         y_l = A->rmap->N - row - 1.0;
20059371c9d4SSatish Balay         y_r = y_l + 1.0;
20069371c9d4SSatish Balay         x_l = a->j[j] * bs;
20079371c9d4SSatish Balay         x_r = x_l + 1.0;
2008b3e7f47fSJed Brown         aa  = a->a + j * bs2;
2009b3e7f47fSJed Brown         for (k = 0; k < bs; k++) {
2010b3e7f47fSJed Brown           for (l = 0; l < bs; l++) {
2011383922c3SLisandro Dalcin             MatScalar v = *aa++;
2012383922c3SLisandro Dalcin             color       = PetscDrawRealToColor(PetscAbsScalar(v), minv, maxv);
20139566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
2014b3e7f47fSJed Brown           }
2015b3e7f47fSJed Brown         }
2016b3e7f47fSJed Brown       }
2017b3e7f47fSJed Brown     }
2018d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
2019b3e7f47fSJed Brown   }
20203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
202177ed5343SBarry Smith }
20223270192aSSatish Balay 
2023d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A, PetscViewer viewer)
2024d71ae5a4SJacob Faibussowitsch {
20250e6d2581SBarry Smith   PetscReal xl, yl, xr, yr, w, h;
2026b0a32e0cSBarry Smith   PetscDraw draw;
2027ace3abfcSBarry Smith   PetscBool isnull;
20283270192aSSatish Balay 
202977ed5343SBarry Smith   PetscFunctionBegin;
20309566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
20319566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
20323ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
203377ed5343SBarry Smith 
20349371c9d4SSatish Balay   xr = A->cmap->n;
20359371c9d4SSatish Balay   yr = A->rmap->N;
20369371c9d4SSatish Balay   h  = yr / 10.0;
20379371c9d4SSatish Balay   w  = xr / 10.0;
20389371c9d4SSatish Balay   xr += w;
20399371c9d4SSatish Balay   yr += h;
20409371c9d4SSatish Balay   xl = -w;
20419371c9d4SSatish Balay   yl = -h;
20429566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
20439566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
20449566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw, MatView_SeqBAIJ_Draw_Zoom, A));
20459566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
20469566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
20473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20483270192aSSatish Balay }
20493270192aSSatish Balay 
2050d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqBAIJ(Mat A, PetscViewer viewer)
2051d71ae5a4SJacob Faibussowitsch {
2052*9f196a02SMartin Diehl   PetscBool isascii, isbinary, isdraw;
20532593348eSBarry Smith 
20543a40ed3dSBarry Smith   PetscFunctionBegin;
2055*9f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
20569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
20579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
2058*9f196a02SMartin Diehl   if (isascii) {
20599566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_ASCII(A, viewer));
20600f5bd95cSBarry Smith   } else if (isbinary) {
20619566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_Binary(A, viewer));
20620f5bd95cSBarry Smith   } else if (isdraw) {
20639566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_Draw(A, viewer));
20645cd90555SBarry Smith   } else {
2065a5e6ed63SBarry Smith     Mat B;
20669566063dSJacob Faibussowitsch     PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &B));
20679566063dSJacob Faibussowitsch     PetscCall(MatView(B, viewer));
20689566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&B));
20692593348eSBarry Smith   }
20703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20712593348eSBarry Smith }
2072b6490206SBarry Smith 
2073d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
2074d71ae5a4SJacob Faibussowitsch {
2075cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
2076c1ac3661SBarry Smith   PetscInt    *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j;
2077c1ac3661SBarry Smith   PetscInt    *ai = a->i, *ailen = a->ilen;
2078d0f46423SBarry Smith   PetscInt     brow, bcol, ridx, cidx, bs = A->rmap->bs, bs2 = a->bs2;
207997e567efSBarry Smith   MatScalar   *ap, *aa = a->a;
2080cd0e1443SSatish Balay 
20813a40ed3dSBarry Smith   PetscFunctionBegin;
20822d61bbb3SSatish Balay   for (k = 0; k < m; k++) { /* loop over rows */
20839371c9d4SSatish Balay     row  = im[k];
20849371c9d4SSatish Balay     brow = row / bs;
20859371c9d4SSatish Balay     if (row < 0) {
20869371c9d4SSatish Balay       v += n;
20879371c9d4SSatish Balay       continue;
20889371c9d4SSatish Balay     } /* negative row */
208954c59aa7SJacob Faibussowitsch     PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " too large", row);
20908e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]);
20918e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]);
20922c3acbe9SBarry Smith     nrow = ailen[brow];
20932d61bbb3SSatish Balay     for (l = 0; l < n; l++) { /* loop over columns */
20949371c9d4SSatish Balay       if (in[l] < 0) {
20959371c9d4SSatish Balay         v++;
20969371c9d4SSatish Balay         continue;
20979371c9d4SSatish Balay       } /* negative column */
209854c59aa7SJacob Faibussowitsch       PetscCheck(in[l] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column %" PetscInt_FMT " too large", in[l]);
20992d61bbb3SSatish Balay       col  = in[l];
21002d61bbb3SSatish Balay       bcol = col / bs;
21012d61bbb3SSatish Balay       cidx = col % bs;
21022d61bbb3SSatish Balay       ridx = row % bs;
21032d61bbb3SSatish Balay       high = nrow;
21042d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
21052d61bbb3SSatish Balay       while (high - low > 5) {
2106cd0e1443SSatish Balay         t = (low + high) / 2;
2107cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
2108cd0e1443SSatish Balay         else low = t;
2109cd0e1443SSatish Balay       }
2110cd0e1443SSatish Balay       for (i = low; i < high; i++) {
2111cd0e1443SSatish Balay         if (rp[i] > bcol) break;
2112cd0e1443SSatish Balay         if (rp[i] == bcol) {
21132d61bbb3SSatish Balay           *v++ = ap[bs2 * i + bs * cidx + ridx];
21142d61bbb3SSatish Balay           goto finished;
2115cd0e1443SSatish Balay         }
2116cd0e1443SSatish Balay       }
211797e567efSBarry Smith       *v++ = 0.0;
21182d61bbb3SSatish Balay     finished:;
2119cd0e1443SSatish Balay     }
2120cd0e1443SSatish Balay   }
21213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2122cd0e1443SSatish Balay }
2123cd0e1443SSatish Balay 
2124d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
2125d71ae5a4SJacob Faibussowitsch {
212692c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
2127e2ee6c50SBarry Smith   PetscInt          *rp, k, low, high, t, ii, jj, row, nrow, i, col, l, rmax, N, lastcol = -1;
2128c1ac3661SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
2129d0f46423SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs, stepval;
2130ace3abfcSBarry Smith   PetscBool          roworiented = a->roworiented;
2131dd6ea824SBarry Smith   const PetscScalar *value       = v;
21329d243f67SHong Zhang   MatScalar         *ap = NULL, *aa = a->a, *bap;
213392c4ed94SBarry Smith 
21343a40ed3dSBarry Smith   PetscFunctionBegin;
21350e324ae4SSatish Balay   if (roworiented) {
21360e324ae4SSatish Balay     stepval = (n - 1) * bs;
21370e324ae4SSatish Balay   } else {
21380e324ae4SSatish Balay     stepval = (m - 1) * bs;
21390e324ae4SSatish Balay   }
214092c4ed94SBarry Smith   for (k = 0; k < m; k++) { /* loop over added rows */
214192c4ed94SBarry Smith     row = im[k];
21425ef9f2a5SBarry Smith     if (row < 0) continue;
21436bdcaf15SBarry Smith     PetscCheck(row < a->mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block row index too large %" PetscInt_FMT " max %" PetscInt_FMT, row, a->mbs - 1);
214492c4ed94SBarry Smith     rp = aj + ai[row];
21457dc0baabSHong Zhang     if (!A->structure_only) ap = aa + bs2 * ai[row];
214692c4ed94SBarry Smith     rmax = imax[row];
214792c4ed94SBarry Smith     nrow = ailen[row];
214892c4ed94SBarry Smith     low  = 0;
2149c71e6ed7SBarry Smith     high = nrow;
215092c4ed94SBarry Smith     for (l = 0; l < n; l++) { /* loop over added columns */
21515ef9f2a5SBarry Smith       if (in[l] < 0) continue;
21526bdcaf15SBarry Smith       PetscCheck(in[l] < a->nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block column index too large %" PetscInt_FMT " max %" PetscInt_FMT, in[l], a->nbs - 1);
215392c4ed94SBarry Smith       col = in[l];
21547dc0baabSHong Zhang       if (!A->structure_only) {
215592c4ed94SBarry Smith         if (roworiented) {
215653ef36baSBarry Smith           value = v + (k * (stepval + bs) + l) * bs;
21570e324ae4SSatish Balay         } else {
215853ef36baSBarry Smith           value = v + (l * (stepval + bs) + k) * bs;
215992c4ed94SBarry Smith         }
21607dc0baabSHong Zhang       }
216126fbe8dcSKarl Rupp       if (col <= lastcol) low = 0;
216226fbe8dcSKarl Rupp       else high = nrow;
2163e2ee6c50SBarry Smith       lastcol = col;
216492c4ed94SBarry Smith       while (high - low > 7) {
216592c4ed94SBarry Smith         t = (low + high) / 2;
216692c4ed94SBarry Smith         if (rp[t] > col) high = t;
216792c4ed94SBarry Smith         else low = t;
216892c4ed94SBarry Smith       }
216992c4ed94SBarry Smith       for (i = low; i < high; i++) {
217092c4ed94SBarry Smith         if (rp[i] > col) break;
217192c4ed94SBarry Smith         if (rp[i] == col) {
21727dc0baabSHong Zhang           if (A->structure_only) goto noinsert2;
21738a84c255SSatish Balay           bap = ap + bs2 * i;
21740e324ae4SSatish Balay           if (roworiented) {
21758a84c255SSatish Balay             if (is == ADD_VALUES) {
2176dd9472c6SBarry Smith               for (ii = 0; ii < bs; ii++, value += stepval) {
2177ad540459SPierre Jolivet                 for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
2178dd9472c6SBarry Smith               }
21790e324ae4SSatish Balay             } else {
2180dd9472c6SBarry Smith               for (ii = 0; ii < bs; ii++, value += stepval) {
2181ad540459SPierre Jolivet                 for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
2182dd9472c6SBarry Smith               }
2183dd9472c6SBarry Smith             }
21840e324ae4SSatish Balay           } else {
21850e324ae4SSatish Balay             if (is == ADD_VALUES) {
218653ef36baSBarry Smith               for (ii = 0; ii < bs; ii++, value += bs + stepval) {
2187ad540459SPierre Jolivet                 for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
218853ef36baSBarry Smith                 bap += bs;
2189dd9472c6SBarry Smith               }
21900e324ae4SSatish Balay             } else {
219153ef36baSBarry Smith               for (ii = 0; ii < bs; ii++, value += bs + stepval) {
2192ad540459SPierre Jolivet                 for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
219353ef36baSBarry Smith                 bap += bs;
21948a84c255SSatish Balay               }
2195dd9472c6SBarry Smith             }
2196dd9472c6SBarry Smith           }
2197f1241b54SBarry Smith           goto noinsert2;
219892c4ed94SBarry Smith         }
219992c4ed94SBarry Smith       }
220089280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
22015f80ce2aSJacob Faibussowitsch       PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked index new nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
22027dc0baabSHong Zhang       if (A->structure_only) {
22037dc0baabSHong Zhang         MatSeqXAIJReallocateAIJ_structure_only(A, a->mbs, bs2, nrow, row, col, rmax, ai, aj, rp, imax, nonew, MatScalar);
22047dc0baabSHong Zhang       } else {
2205fef13f97SBarry Smith         MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
22067dc0baabSHong Zhang       }
22079371c9d4SSatish Balay       N = nrow++ - 1;
22089371c9d4SSatish Balay       high++;
220992c4ed94SBarry Smith       /* shift up all the later entries in this row */
22109566063dSJacob Faibussowitsch       PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
221192c4ed94SBarry Smith       rp[i] = col;
22127dc0baabSHong Zhang       if (!A->structure_only) {
22139566063dSJacob Faibussowitsch         PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
22148a84c255SSatish Balay         bap = ap + bs2 * i;
22150e324ae4SSatish Balay         if (roworiented) {
2216dd9472c6SBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
2217ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
2218dd9472c6SBarry Smith           }
22190e324ae4SSatish Balay         } else {
2220dd9472c6SBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
2221ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
2222dd9472c6SBarry Smith           }
2223dd9472c6SBarry Smith         }
22247dc0baabSHong Zhang       }
2225f1241b54SBarry Smith     noinsert2:;
222692c4ed94SBarry Smith       low = i;
222792c4ed94SBarry Smith     }
222892c4ed94SBarry Smith     ailen[row] = nrow;
222992c4ed94SBarry Smith   }
22303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
223192c4ed94SBarry Smith }
223226e093fcSHong Zhang 
2233d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A, MatAssemblyType mode)
2234d71ae5a4SJacob Faibussowitsch {
2235584200bdSSatish Balay   Mat_SeqBAIJ *a      = (Mat_SeqBAIJ *)A->data;
2236580bdb30SBarry Smith   PetscInt     fshift = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax;
2237d0f46423SBarry Smith   PetscInt     m = A->rmap->N, *ip, N, *ailen = a->ilen;
2238c1ac3661SBarry Smith   PetscInt     mbs = a->mbs, bs2 = a->bs2, rmax = 0;
22393f1db9ecSBarry Smith   MatScalar   *aa    = a->a, *ap;
22403447b6efSHong Zhang   PetscReal    ratio = 0.6;
2241584200bdSSatish Balay 
22423a40ed3dSBarry Smith   PetscFunctionBegin;
2243d32568d8SPierre Jolivet   if (mode == MAT_FLUSH_ASSEMBLY || (A->was_assembled && A->ass_nonzerostate == A->nonzerostate)) PetscFunctionReturn(PETSC_SUCCESS);
2244584200bdSSatish Balay 
224543ee02c3SBarry Smith   if (m) rmax = ailen[0];
2246584200bdSSatish Balay   for (i = 1; i < mbs; i++) {
2247584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
2248584200bdSSatish Balay     fshift += imax[i - 1] - ailen[i - 1];
2249d402145bSBarry Smith     rmax = PetscMax(rmax, ailen[i]);
2250584200bdSSatish Balay     if (fshift) {
2251580bdb30SBarry Smith       ip = aj + ai[i];
2252580bdb30SBarry Smith       ap = aa + bs2 * ai[i];
2253584200bdSSatish Balay       N  = ailen[i];
22549566063dSJacob Faibussowitsch       PetscCall(PetscArraymove(ip - fshift, ip, N));
225548a46eb9SPierre Jolivet       if (!A->structure_only) PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2 * N));
2256672ba085SHong Zhang     }
2257584200bdSSatish Balay     ai[i] = ai[i - 1] + ailen[i - 1];
2258584200bdSSatish Balay   }
2259584200bdSSatish Balay   if (mbs) {
2260584200bdSSatish Balay     fshift += imax[mbs - 1] - ailen[mbs - 1];
2261584200bdSSatish Balay     ai[mbs] = ai[mbs - 1] + ailen[mbs - 1];
2262584200bdSSatish Balay   }
22637c565772SBarry Smith 
2264584200bdSSatish Balay   /* reset ilen and imax for each row */
22657c565772SBarry Smith   a->nonzerorowcnt = 0;
2266672ba085SHong Zhang   if (A->structure_only) {
22679566063dSJacob Faibussowitsch     PetscCall(PetscFree2(a->imax, a->ilen));
2268672ba085SHong Zhang   } else { /* !A->structure_only */
2269584200bdSSatish Balay     for (i = 0; i < mbs; i++) {
2270584200bdSSatish Balay       ailen[i] = imax[i] = ai[i + 1] - ai[i];
22717c565772SBarry Smith       a->nonzerorowcnt += ((ai[i + 1] - ai[i]) > 0);
2272584200bdSSatish Balay     }
2273672ba085SHong Zhang   }
2274a7c10996SSatish Balay   a->nz = ai[mbs];
2275584200bdSSatish Balay 
2276584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
2277b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
2278ff6a9541SJacob Faibussowitsch   if (fshift && a->diag) PetscCall(PetscFree(a->diag));
22795f80ce2aSJacob Faibussowitsch   if (fshift) PetscCheck(a->nounused != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unused space detected in matrix: %" PetscInt_FMT " X %" PetscInt_FMT " block size %" PetscInt_FMT ", %" PetscInt_FMT " unneeded", m, A->cmap->n, A->rmap->bs, fshift * bs2);
22809566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT ", block size %" PetscInt_FMT "; storage space: %" PetscInt_FMT " unneeded, %" PetscInt_FMT " used\n", m, A->cmap->n, A->rmap->bs, fshift * bs2, a->nz * bs2));
22819566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues is %" PetscInt_FMT "\n", a->reallocs));
22829566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Most nonzeros blocks in any row is %" PetscInt_FMT "\n", rmax));
228326fbe8dcSKarl Rupp 
22848e58a170SBarry Smith   A->info.mallocs += a->reallocs;
2285e2f3b5e9SSatish Balay   a->reallocs         = 0;
22860e6d2581SBarry Smith   A->info.nz_unneeded = (PetscReal)fshift * bs2;
2287647a6520SHong Zhang   a->rmax             = rmax;
2288cf4441caSHong Zhang 
228948a46eb9SPierre Jolivet   if (!A->structure_only) PetscCall(MatCheckCompressedRow(A, a->nonzerorowcnt, &a->compressedrow, a->i, mbs, ratio));
22903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2291584200bdSSatish Balay }
2292584200bdSSatish Balay 
2293bea157c4SSatish Balay /*
2294bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
2295bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
2296a5b23f4aSJose E. Roman    then the resulting sizes = [3,1,1,3,1] corresponding to sets [(0,1,2),(3),(5),(6,7,8),(9)]
2297bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
2298bea157c4SSatish Balay */
2299d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[], PetscInt n, PetscInt bs, PetscInt sizes[], PetscInt *bs_max)
2300d71ae5a4SJacob Faibussowitsch {
2301ff6a9541SJacob Faibussowitsch   PetscInt j = 0;
23023a40ed3dSBarry Smith 
2303433994e6SBarry Smith   PetscFunctionBegin;
2304ff6a9541SJacob Faibussowitsch   for (PetscInt i = 0; i < n; j++) {
2305ff6a9541SJacob Faibussowitsch     PetscInt row = idx[i];
2306a5b23f4aSJose E. Roman     if (row % bs != 0) { /* Not the beginning of a block */
2307bea157c4SSatish Balay       sizes[j] = 1;
2308bea157c4SSatish Balay       i++;
2309e4fda26cSSatish Balay     } else if (i + bs > n) { /* complete block doesn't exist (at idx end) */
2310bea157c4SSatish Balay       sizes[j] = 1;          /* Also makes sure at least 'bs' values exist for next else */
2311bea157c4SSatish Balay       i++;
23126aad120cSJose E. Roman     } else { /* Beginning of the block, so check if the complete block exists */
2313ff6a9541SJacob Faibussowitsch       PetscBool flg = PETSC_TRUE;
2314ff6a9541SJacob Faibussowitsch       for (PetscInt k = 1; k < bs; k++) {
2315bea157c4SSatish Balay         if (row + k != idx[i + k]) { /* break in the block */
2316bea157c4SSatish Balay           flg = PETSC_FALSE;
2317bea157c4SSatish Balay           break;
2318d9b7c43dSSatish Balay         }
2319bea157c4SSatish Balay       }
2320abc0a331SBarry Smith       if (flg) { /* No break in the bs */
2321bea157c4SSatish Balay         sizes[j] = bs;
2322bea157c4SSatish Balay         i += bs;
2323bea157c4SSatish Balay       } else {
2324bea157c4SSatish Balay         sizes[j] = 1;
2325bea157c4SSatish Balay         i++;
2326bea157c4SSatish Balay       }
2327bea157c4SSatish Balay     }
2328bea157c4SSatish Balay   }
2329bea157c4SSatish Balay   *bs_max = j;
23303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2331d9b7c43dSSatish Balay }
2332d9b7c43dSSatish Balay 
2333d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_SeqBAIJ(Mat A, PetscInt is_n, const PetscInt is_idx[], PetscScalar diag, Vec x, Vec b)
2334d71ae5a4SJacob Faibussowitsch {
2335d9b7c43dSSatish Balay   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)A->data;
2336f4df32b1SMatthew Knepley   PetscInt           i, j, k, count, *rows;
2337d0f46423SBarry Smith   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2, *sizes, row, bs_max;
233887828ca2SBarry Smith   PetscScalar        zero = 0.0;
23393f1db9ecSBarry Smith   MatScalar         *aa;
234097b48c8fSBarry Smith   const PetscScalar *xx;
234197b48c8fSBarry Smith   PetscScalar       *bb;
2342d9b7c43dSSatish Balay 
23433a40ed3dSBarry Smith   PetscFunctionBegin;
2344dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
234597b48c8fSBarry Smith   if (x && b) {
23469566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
23479566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
2348ad540459SPierre Jolivet     for (i = 0; i < is_n; i++) bb[is_idx[i]] = diag * xx[is_idx[i]];
23499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
23509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
235197b48c8fSBarry Smith   }
235297b48c8fSBarry Smith 
2353d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2354bea157c4SSatish Balay   /* allocate memory for rows,sizes */
23559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(is_n, &rows, 2 * is_n, &sizes));
2356bea157c4SSatish Balay 
2357563b5814SBarry Smith   /* copy IS values to rows, and sort them */
235826fbe8dcSKarl Rupp   for (i = 0; i < is_n; i++) rows[i] = is_idx[i];
23599566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(is_n, rows));
236097b48c8fSBarry Smith 
2361a9817697SBarry Smith   if (baij->keepnonzeropattern) {
236226fbe8dcSKarl Rupp     for (i = 0; i < is_n; i++) sizes[i] = 1;
2363dffd3267SBarry Smith     bs_max = is_n;
2364dffd3267SBarry Smith   } else {
23659566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ_Check_Blocks(rows, is_n, bs, sizes, &bs_max));
2366e56f5c9eSBarry Smith     A->nonzerostate++;
2367dffd3267SBarry Smith   }
2368bea157c4SSatish Balay 
2369bea157c4SSatish Balay   for (i = 0, j = 0; i < bs_max; j += sizes[i], i++) {
2370bea157c4SSatish Balay     row = rows[j];
23715f80ce2aSJacob Faibussowitsch     PetscCheck(row >= 0 && row <= A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "row %" PetscInt_FMT " out of range", row);
2372bea157c4SSatish Balay     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
2373835f2295SStefano Zampini     aa    = baij->a + baij->i[row / bs] * bs2 + (row % bs);
2374a9817697SBarry Smith     if (sizes[i] == bs && !baij->keepnonzeropattern) {
2375d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2376bea157c4SSatish Balay         if (baij->ilen[row / bs] > 0) {
2377bea157c4SSatish Balay           baij->ilen[row / bs]       = 1;
2378bea157c4SSatish Balay           baij->j[baij->i[row / bs]] = row / bs;
237926fbe8dcSKarl Rupp 
23809566063dSJacob Faibussowitsch           PetscCall(PetscArrayzero(aa, count * bs));
2381a07cd24cSSatish Balay         }
2382563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
23839927e4dfSBarry Smith         for (k = 0; k < bs; k++) PetscUseTypeMethod(A, setvalues, 1, rows + j + k, 1, rows + j + k, &diag, INSERT_VALUES);
2384f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2385bea157c4SSatish Balay         baij->ilen[row / bs] = 0;
2386f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2387bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
23886bdcaf15SBarry Smith       PetscAssert(sizes[i] == 1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal Error. Value should be 1");
2389bea157c4SSatish Balay       for (k = 0; k < count; k++) {
2390d9b7c43dSSatish Balay         aa[0] = zero;
2391d9b7c43dSSatish Balay         aa += bs;
2392d9b7c43dSSatish Balay       }
23939927e4dfSBarry Smith       if (diag != (PetscScalar)0.0) PetscUseTypeMethod(A, setvalues, 1, rows + j, 1, rows + j, &diag, INSERT_VALUES);
2394d9b7c43dSSatish Balay     }
2395bea157c4SSatish Balay   }
2396bea157c4SSatish Balay 
23979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rows, sizes));
23989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd_SeqBAIJ(A, MAT_FINAL_ASSEMBLY));
23993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2400d9b7c43dSSatish Balay }
24011c351548SSatish Balay 
2402ff6a9541SJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A, PetscInt is_n, const PetscInt is_idx[], PetscScalar diag, Vec x, Vec b)
2403d71ae5a4SJacob Faibussowitsch {
240497b48c8fSBarry Smith   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)A->data;
240597b48c8fSBarry Smith   PetscInt           i, j, k, count;
240697b48c8fSBarry Smith   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2, row, col;
240797b48c8fSBarry Smith   PetscScalar        zero = 0.0;
240897b48c8fSBarry Smith   MatScalar         *aa;
240997b48c8fSBarry Smith   const PetscScalar *xx;
241097b48c8fSBarry Smith   PetscScalar       *bb;
241156777dd2SBarry Smith   PetscBool         *zeroed, vecs = PETSC_FALSE;
241297b48c8fSBarry Smith 
241397b48c8fSBarry Smith   PetscFunctionBegin;
2414dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
241597b48c8fSBarry Smith   if (x && b) {
24169566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
24179566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
241856777dd2SBarry Smith     vecs = PETSC_TRUE;
241997b48c8fSBarry Smith   }
242097b48c8fSBarry Smith 
242197b48c8fSBarry Smith   /* zero the columns */
24229566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(A->rmap->n, &zeroed));
242397b48c8fSBarry Smith   for (i = 0; i < is_n; i++) {
24245f80ce2aSJacob Faibussowitsch     PetscCheck(is_idx[i] >= 0 && is_idx[i] < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "row %" PetscInt_FMT " out of range", is_idx[i]);
242597b48c8fSBarry Smith     zeroed[is_idx[i]] = PETSC_TRUE;
242697b48c8fSBarry Smith   }
242797b48c8fSBarry Smith   for (i = 0; i < A->rmap->N; i++) {
242897b48c8fSBarry Smith     if (!zeroed[i]) {
242997b48c8fSBarry Smith       row = i / bs;
243097b48c8fSBarry Smith       for (j = baij->i[row]; j < baij->i[row + 1]; j++) {
243197b48c8fSBarry Smith         for (k = 0; k < bs; k++) {
243297b48c8fSBarry Smith           col = bs * baij->j[j] + k;
243397b48c8fSBarry Smith           if (zeroed[col]) {
2434835f2295SStefano Zampini             aa = baij->a + j * bs2 + (i % bs) + bs * k;
243556777dd2SBarry Smith             if (vecs) bb[i] -= aa[0] * xx[col];
243697b48c8fSBarry Smith             aa[0] = 0.0;
243797b48c8fSBarry Smith           }
243897b48c8fSBarry Smith         }
243997b48c8fSBarry Smith       }
244056777dd2SBarry Smith     } else if (vecs) bb[i] = diag * xx[i];
244197b48c8fSBarry Smith   }
24429566063dSJacob Faibussowitsch   PetscCall(PetscFree(zeroed));
244356777dd2SBarry Smith   if (vecs) {
24449566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
24459566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
244656777dd2SBarry Smith   }
244797b48c8fSBarry Smith 
244897b48c8fSBarry Smith   /* zero the rows */
244997b48c8fSBarry Smith   for (i = 0; i < is_n; i++) {
245097b48c8fSBarry Smith     row   = is_idx[i];
245197b48c8fSBarry Smith     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
2452835f2295SStefano Zampini     aa    = baij->a + baij->i[row / bs] * bs2 + (row % bs);
245397b48c8fSBarry Smith     for (k = 0; k < count; k++) {
245497b48c8fSBarry Smith       aa[0] = zero;
245597b48c8fSBarry Smith       aa += bs;
245697b48c8fSBarry Smith     }
2457dbbe0bcdSBarry Smith     if (diag != (PetscScalar)0.0) PetscUseTypeMethod(A, setvalues, 1, &row, 1, &row, &diag, INSERT_VALUES);
245897b48c8fSBarry Smith   }
24599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd_SeqBAIJ(A, MAT_FINAL_ASSEMBLY));
24603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
246197b48c8fSBarry Smith }
246297b48c8fSBarry Smith 
2463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
2464d71ae5a4SJacob Faibussowitsch {
24652d61bbb3SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
2466e2ee6c50SBarry Smith   PetscInt    *rp, k, low, high, t, ii, row, nrow, i, col, l, rmax, N, lastcol = -1;
2467c1ac3661SBarry Smith   PetscInt    *imax = a->imax, *ai = a->i, *ailen = a->ilen;
2468d0f46423SBarry Smith   PetscInt    *aj = a->j, nonew = a->nonew, bs = A->rmap->bs, brow, bcol;
2469c1ac3661SBarry Smith   PetscInt     ridx, cidx, bs2                 = a->bs2;
2470ace3abfcSBarry Smith   PetscBool    roworiented = a->roworiented;
2471d8cdefa3SHong Zhang   MatScalar   *ap = NULL, value = 0.0, *aa = a->a, *bap;
24722d61bbb3SSatish Balay 
24732d61bbb3SSatish Balay   PetscFunctionBegin;
24742d61bbb3SSatish Balay   for (k = 0; k < m; k++) { /* loop over added rows */
2475085a36d4SBarry Smith     row  = im[k];
2476085a36d4SBarry Smith     brow = row / bs;
24775ef9f2a5SBarry Smith     if (row < 0) continue;
24786bdcaf15SBarry Smith     PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->N - 1);
24798e3a54c0SPierre Jolivet     rp = PetscSafePointerPlusOffset(aj, ai[brow]);
24808e3a54c0SPierre Jolivet     if (!A->structure_only) ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]);
24812d61bbb3SSatish Balay     rmax = imax[brow];
24822d61bbb3SSatish Balay     nrow = ailen[brow];
24832d61bbb3SSatish Balay     low  = 0;
2484c71e6ed7SBarry Smith     high = nrow;
24852d61bbb3SSatish Balay     for (l = 0; l < n; l++) { /* loop over added columns */
24865ef9f2a5SBarry Smith       if (in[l] < 0) continue;
24876bdcaf15SBarry Smith       PetscCheck(in[l] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[l], A->cmap->n - 1);
24889371c9d4SSatish Balay       col  = in[l];
24899371c9d4SSatish Balay       bcol = col / bs;
24909371c9d4SSatish Balay       ridx = row % bs;
24919371c9d4SSatish Balay       cidx = col % bs;
2492672ba085SHong Zhang       if (!A->structure_only) {
24932d61bbb3SSatish Balay         if (roworiented) {
24945ef9f2a5SBarry Smith           value = v[l + k * n];
24952d61bbb3SSatish Balay         } else {
24962d61bbb3SSatish Balay           value = v[k + l * m];
24972d61bbb3SSatish Balay         }
2498672ba085SHong Zhang       }
24999371c9d4SSatish Balay       if (col <= lastcol) low = 0;
25009371c9d4SSatish Balay       else high = nrow;
2501e2ee6c50SBarry Smith       lastcol = col;
25022d61bbb3SSatish Balay       while (high - low > 7) {
25032d61bbb3SSatish Balay         t = (low + high) / 2;
25042d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
25052d61bbb3SSatish Balay         else low = t;
25062d61bbb3SSatish Balay       }
25072d61bbb3SSatish Balay       for (i = low; i < high; i++) {
25082d61bbb3SSatish Balay         if (rp[i] > bcol) break;
25092d61bbb3SSatish Balay         if (rp[i] == bcol) {
25108e3a54c0SPierre Jolivet           bap = PetscSafePointerPlusOffset(ap, bs2 * i + bs * cidx + ridx);
2511672ba085SHong Zhang           if (!A->structure_only) {
25122d61bbb3SSatish Balay             if (is == ADD_VALUES) *bap += value;
25132d61bbb3SSatish Balay             else *bap = value;
2514672ba085SHong Zhang           }
25152d61bbb3SSatish Balay           goto noinsert1;
25162d61bbb3SSatish Balay         }
25172d61bbb3SSatish Balay       }
25182d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
25195f80ce2aSJacob Faibussowitsch       PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
2520672ba085SHong Zhang       if (A->structure_only) {
2521672ba085SHong Zhang         MatSeqXAIJReallocateAIJ_structure_only(A, a->mbs, bs2, nrow, brow, bcol, rmax, ai, aj, rp, imax, nonew, MatScalar);
2522672ba085SHong Zhang       } else {
2523fef13f97SBarry Smith         MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
2524672ba085SHong Zhang       }
25259371c9d4SSatish Balay       N = nrow++ - 1;
25269371c9d4SSatish Balay       high++;
25272d61bbb3SSatish Balay       /* shift up all the later entries in this row */
25289566063dSJacob Faibussowitsch       PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
25292d61bbb3SSatish Balay       rp[i] = bcol;
2530580bdb30SBarry Smith       if (!A->structure_only) {
25319566063dSJacob Faibussowitsch         PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
25329566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(ap + bs2 * i, bs2));
2533580bdb30SBarry Smith         ap[bs2 * i + bs * cidx + ridx] = value;
2534580bdb30SBarry Smith       }
2535085a36d4SBarry Smith       a->nz++;
25362d61bbb3SSatish Balay     noinsert1:;
25372d61bbb3SSatish Balay       low = i;
25382d61bbb3SSatish Balay     }
25392d61bbb3SSatish Balay     ailen[brow] = nrow;
25402d61bbb3SSatish Balay   }
25413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25422d61bbb3SSatish Balay }
25432d61bbb3SSatish Balay 
2544ff6a9541SJacob Faibussowitsch static PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA, IS row, IS col, const MatFactorInfo *info)
2545d71ae5a4SJacob Faibussowitsch {
25462d61bbb3SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inA->data;
25472d61bbb3SSatish Balay   Mat          outA;
2548ace3abfcSBarry Smith   PetscBool    row_identity, col_identity;
25492d61bbb3SSatish Balay 
25502d61bbb3SSatish Balay   PetscFunctionBegin;
25515f80ce2aSJacob Faibussowitsch   PetscCheck(info->levels == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only levels = 0 supported for in-place ILU");
25529566063dSJacob Faibussowitsch   PetscCall(ISIdentity(row, &row_identity));
25539566063dSJacob Faibussowitsch   PetscCall(ISIdentity(col, &col_identity));
25545f80ce2aSJacob Faibussowitsch   PetscCheck(row_identity && col_identity, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Row and column permutations must be identity for in-place ILU");
25552d61bbb3SSatish Balay 
25562d61bbb3SSatish Balay   outA            = inA;
2557d5f3da31SBarry Smith   inA->factortype = MAT_FACTOR_LU;
25589566063dSJacob Faibussowitsch   PetscCall(PetscFree(inA->solvertype));
25599566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC, &inA->solvertype));
25602d61bbb3SSatish Balay 
25619566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqBAIJ(inA));
2562cf242676SKris Buschelman 
25639566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)row));
25649566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
2565c3122656SLisandro Dalcin   a->row = row;
25669566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)col));
25679566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
2568c3122656SLisandro Dalcin   a->col = col;
2569c38d4ed2SBarry Smith 
2570c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
25719566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
25729566063dSJacob Faibussowitsch   PetscCall(ISInvertPermutation(col, PETSC_DECIDE, &a->icol));
2573c38d4ed2SBarry Smith 
25749566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetNumericFactorization_inplace(inA, (PetscBool)(row_identity && col_identity)));
2575aa624791SPierre Jolivet   if (!a->solve_work) PetscCall(PetscMalloc1(inA->rmap->N + inA->rmap->bs, &a->solve_work));
25769566063dSJacob Faibussowitsch   PetscCall(MatLUFactorNumeric(outA, inA, info));
25773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25782d61bbb3SSatish Balay }
2579d9b7c43dSSatish Balay 
2580ff6a9541SJacob Faibussowitsch static PetscErrorCode MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat, const PetscInt *indices)
2581d71ae5a4SJacob Faibussowitsch {
258227a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data;
258327a8da17SBarry Smith 
258427a8da17SBarry Smith   PetscFunctionBegin;
2585ff6a9541SJacob Faibussowitsch   baij->nz = baij->maxnz;
2586ff6a9541SJacob Faibussowitsch   PetscCall(PetscArraycpy(baij->j, indices, baij->nz));
2587ff6a9541SJacob Faibussowitsch   PetscCall(PetscArraycpy(baij->ilen, baij->imax, baij->mbs));
25883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
258927a8da17SBarry Smith }
259027a8da17SBarry Smith 
259127a8da17SBarry Smith /*@
2592d8a51d2aSBarry Smith   MatSeqBAIJSetColumnIndices - Set the column indices for all the block rows in the matrix.
259327a8da17SBarry Smith 
259427a8da17SBarry Smith   Input Parameters:
259511a5261eSBarry Smith + mat     - the `MATSEQBAIJ` matrix
2596d8a51d2aSBarry Smith - indices - the block column indices
259727a8da17SBarry Smith 
259815091d37SBarry Smith   Level: advanced
259915091d37SBarry Smith 
260027a8da17SBarry Smith   Notes:
260127a8da17SBarry Smith   This can be called if you have precomputed the nonzero structure of the
260227a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
260311a5261eSBarry Smith   of the `MatSetValues()` operation.
260427a8da17SBarry Smith 
260527a8da17SBarry Smith   You MUST have set the correct numbers of nonzeros per row in the call to
260611a5261eSBarry Smith   `MatCreateSeqBAIJ()`, and the columns indices MUST be sorted.
260727a8da17SBarry Smith 
260811a5261eSBarry Smith   MUST be called before any calls to `MatSetValues()`
260927a8da17SBarry Smith 
26101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQBAIJ`, `MatSetValues()`
261127a8da17SBarry Smith @*/
2612d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqBAIJSetColumnIndices(Mat mat, PetscInt *indices)
2613d71ae5a4SJacob Faibussowitsch {
261427a8da17SBarry Smith   PetscFunctionBegin;
26150700a824SBarry Smith   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
26164f572ea9SToby Isaac   PetscAssertPointer(indices, 2);
2617810441c8SPierre Jolivet   PetscUseMethod(mat, "MatSeqBAIJSetColumnIndices_C", (Mat, const PetscInt *), (mat, (const PetscInt *)indices));
26183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
261927a8da17SBarry Smith }
262027a8da17SBarry Smith 
262166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A, Vec v, PetscInt idx[])
2622d71ae5a4SJacob Faibussowitsch {
2623273d9f13SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
2624c1ac3661SBarry Smith   PetscInt     i, j, n, row, bs, *ai, *aj, mbs;
2625273d9f13SBarry Smith   PetscReal    atmp;
262687828ca2SBarry Smith   PetscScalar *x, zero = 0.0;
2627273d9f13SBarry Smith   MatScalar   *aa;
2628c1ac3661SBarry Smith   PetscInt     ncols, brow, krow, kcol;
2629273d9f13SBarry Smith 
2630273d9f13SBarry Smith   PetscFunctionBegin;
26315f80ce2aSJacob Faibussowitsch   PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2632d0f46423SBarry Smith   bs  = A->rmap->bs;
2633273d9f13SBarry Smith   aa  = a->a;
2634273d9f13SBarry Smith   ai  = a->i;
2635273d9f13SBarry Smith   aj  = a->j;
2636273d9f13SBarry Smith   mbs = a->mbs;
2637273d9f13SBarry Smith 
26389566063dSJacob Faibussowitsch   PetscCall(VecSet(v, zero));
26399566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
26409566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &n));
26415f80ce2aSJacob Faibussowitsch   PetscCheck(n == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
2642273d9f13SBarry Smith   for (i = 0; i < mbs; i++) {
26439371c9d4SSatish Balay     ncols = ai[1] - ai[0];
26449371c9d4SSatish Balay     ai++;
2645273d9f13SBarry Smith     brow = bs * i;
2646273d9f13SBarry Smith     for (j = 0; j < ncols; j++) {
2647273d9f13SBarry Smith       for (kcol = 0; kcol < bs; kcol++) {
2648273d9f13SBarry Smith         for (krow = 0; krow < bs; krow++) {
26499371c9d4SSatish Balay           atmp = PetscAbsScalar(*aa);
26509371c9d4SSatish Balay           aa++;
2651273d9f13SBarry Smith           row = brow + krow; /* row index */
26529371c9d4SSatish Balay           if (PetscAbsScalar(x[row]) < atmp) {
26539371c9d4SSatish Balay             x[row] = atmp;
26549371c9d4SSatish Balay             if (idx) idx[row] = bs * (*aj) + kcol;
26559371c9d4SSatish Balay           }
2656273d9f13SBarry Smith         }
2657273d9f13SBarry Smith       }
2658273d9f13SBarry Smith       aj++;
2659273d9f13SBarry Smith     }
2660273d9f13SBarry Smith   }
26619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
26623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2663273d9f13SBarry Smith }
2664273d9f13SBarry Smith 
2665eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_SeqBAIJ(Mat A, Vec v)
2666eede4a3fSMark Adams {
2667eede4a3fSMark Adams   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
2668eede4a3fSMark Adams   PetscInt     i, j, n, row, bs, *ai, mbs;
2669eede4a3fSMark Adams   PetscReal    atmp;
2670eede4a3fSMark Adams   PetscScalar *x, zero = 0.0;
2671eede4a3fSMark Adams   MatScalar   *aa;
2672eede4a3fSMark Adams   PetscInt     ncols, brow, krow, kcol;
2673eede4a3fSMark Adams 
2674eede4a3fSMark Adams   PetscFunctionBegin;
2675eede4a3fSMark Adams   PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2676eede4a3fSMark Adams   bs  = A->rmap->bs;
2677eede4a3fSMark Adams   aa  = a->a;
2678eede4a3fSMark Adams   ai  = a->i;
2679eede4a3fSMark Adams   mbs = a->mbs;
2680eede4a3fSMark Adams 
2681eede4a3fSMark Adams   PetscCall(VecSet(v, zero));
2682eede4a3fSMark Adams   PetscCall(VecGetArrayWrite(v, &x));
2683eede4a3fSMark Adams   PetscCall(VecGetLocalSize(v, &n));
2684eede4a3fSMark Adams   PetscCheck(n == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
2685eede4a3fSMark Adams   for (i = 0; i < mbs; i++) {
2686eede4a3fSMark Adams     ncols = ai[1] - ai[0];
2687eede4a3fSMark Adams     ai++;
2688eede4a3fSMark Adams     brow = bs * i;
2689eede4a3fSMark Adams     for (j = 0; j < ncols; j++) {
2690eede4a3fSMark Adams       for (kcol = 0; kcol < bs; kcol++) {
2691eede4a3fSMark Adams         for (krow = 0; krow < bs; krow++) {
2692eede4a3fSMark Adams           atmp = PetscAbsScalar(*aa);
2693eede4a3fSMark Adams           aa++;
2694eede4a3fSMark Adams           row = brow + krow; /* row index */
2695eede4a3fSMark Adams           x[row] += atmp;
2696eede4a3fSMark Adams         }
2697eede4a3fSMark Adams       }
2698eede4a3fSMark Adams     }
2699eede4a3fSMark Adams   }
2700eede4a3fSMark Adams   PetscCall(VecRestoreArrayWrite(v, &x));
2701eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2702eede4a3fSMark Adams }
2703eede4a3fSMark Adams 
270466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_SeqBAIJ(Mat A, Mat B, MatStructure str)
2705d71ae5a4SJacob Faibussowitsch {
27063c896bc6SHong Zhang   PetscFunctionBegin;
27073c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
27083c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
27093c896bc6SHong Zhang     Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)A->data;
27103c896bc6SHong Zhang     Mat_SeqBAIJ *b    = (Mat_SeqBAIJ *)B->data;
2711d88c0aacSHong Zhang     PetscInt     ambs = a->mbs, bmbs = b->mbs, abs = A->rmap->bs, bbs = B->rmap->bs, bs2 = abs * abs;
27123c896bc6SHong Zhang 
27135f80ce2aSJacob Faibussowitsch     PetscCheck(a->i[ambs] == b->i[bmbs], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzero blocks in matrices A %" PetscInt_FMT " and B %" PetscInt_FMT " are different", a->i[ambs], b->i[bmbs]);
27145f80ce2aSJacob Faibussowitsch     PetscCheck(abs == bbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Block size A %" PetscInt_FMT " and B %" PetscInt_FMT " are different", abs, bbs);
27159566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(b->a, a->a, bs2 * a->i[ambs]));
27169566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)B));
27173c896bc6SHong Zhang   } else {
27189566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
27193c896bc6SHong Zhang   }
27203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27213c896bc6SHong Zhang }
27223c896bc6SHong Zhang 
2723d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A, PetscScalar *array[])
2724d71ae5a4SJacob Faibussowitsch {
2725f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
27266e111a19SKarl Rupp 
2727f2a5309cSSatish Balay   PetscFunctionBegin;
2728f2a5309cSSatish Balay   *array = a->a;
27293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2730f2a5309cSSatish Balay }
2731f2a5309cSSatish Balay 
2732d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A, PetscScalar *array[])
2733d71ae5a4SJacob Faibussowitsch {
2734f2a5309cSSatish Balay   PetscFunctionBegin;
2735cda14afcSprj-   *array = NULL;
27363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2737f2a5309cSSatish Balay }
2738f2a5309cSSatish Balay 
2739d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_SeqBAIJ(Mat Y, Mat X, PetscInt *nnz)
2740d71ae5a4SJacob Faibussowitsch {
2741b264fe52SHong Zhang   PetscInt     bs = Y->rmap->bs, mbs = Y->rmap->N / bs;
274252768537SHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
274352768537SHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
274452768537SHong Zhang 
274552768537SHong Zhang   PetscFunctionBegin;
274652768537SHong Zhang   /* Set the number of nonzeros in the new matrix */
27479566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_SeqX_private(mbs, x->i, x->j, y->i, y->j, nnz));
27483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
274952768537SHong Zhang }
275052768537SHong Zhang 
2751d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_SeqBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2752d71ae5a4SJacob Faibussowitsch {
275342ee4b1aSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data, *y = (Mat_SeqBAIJ *)Y->data;
275431ce2d13SHong Zhang   PetscInt     bs = Y->rmap->bs, bs2 = bs * bs;
2755e838b9e7SJed Brown   PetscBLASInt one = 1;
275642ee4b1aSHong Zhang 
275742ee4b1aSHong Zhang   PetscFunctionBegin;
2758134adf20SPierre Jolivet   if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) {
2759134adf20SPierre Jolivet     PetscBool e = x->nz == y->nz && x->mbs == y->mbs && bs == X->rmap->bs ? PETSC_TRUE : PETSC_FALSE;
2760134adf20SPierre Jolivet     if (e) {
27619566063dSJacob Faibussowitsch       PetscCall(PetscArraycmp(x->i, y->i, x->mbs + 1, &e));
2762134adf20SPierre Jolivet       if (e) {
27639566063dSJacob Faibussowitsch         PetscCall(PetscArraycmp(x->j, y->j, x->i[x->mbs], &e));
2764134adf20SPierre Jolivet         if (e) str = SAME_NONZERO_PATTERN;
2765134adf20SPierre Jolivet       }
2766134adf20SPierre Jolivet     }
276754c59aa7SJacob Faibussowitsch     if (!e) PetscCheck(str != SAME_NONZERO_PATTERN, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MatStructure is not SAME_NONZERO_PATTERN");
2768134adf20SPierre Jolivet   }
276942ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2770f4df32b1SMatthew Knepley     PetscScalar  alpha = a;
2771c5df96a5SBarry Smith     PetscBLASInt bnz;
27729566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
2773792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
27749566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
2775ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
27769566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
277742ee4b1aSHong Zhang   } else {
277852768537SHong Zhang     Mat       B;
277952768537SHong Zhang     PetscInt *nnz;
278054c59aa7SJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
27819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Y->rmap->N, &nnz));
27829566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
27839566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
27849566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
27859566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
27869566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, (MatType)((PetscObject)Y)->type_name));
27879566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(Y, X, nnz));
27889566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(B, bs, 0, nnz));
27899566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
27909566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
27919566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz));
279242ee4b1aSHong Zhang   }
27933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279442ee4b1aSHong Zhang }
279542ee4b1aSHong Zhang 
2796d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConjugate_SeqBAIJ(Mat A)
2797d71ae5a4SJacob Faibussowitsch {
2798ff6a9541SJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
27992726fb6dSPierre Jolivet   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
28002726fb6dSPierre Jolivet   PetscInt     i, nz = a->bs2 * a->i[a->mbs];
28012726fb6dSPierre Jolivet   MatScalar   *aa = a->a;
28022726fb6dSPierre Jolivet 
28032726fb6dSPierre Jolivet   PetscFunctionBegin;
28042726fb6dSPierre Jolivet   for (i = 0; i < nz; i++) aa[i] = PetscConj(aa[i]);
28053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2806ff6a9541SJacob Faibussowitsch #else
2807ff6a9541SJacob Faibussowitsch   (void)A;
2808ff6a9541SJacob Faibussowitsch   return PETSC_SUCCESS;
2809ff6a9541SJacob Faibussowitsch #endif
28102726fb6dSPierre Jolivet }
28112726fb6dSPierre Jolivet 
2812ff6a9541SJacob Faibussowitsch static PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
2813d71ae5a4SJacob Faibussowitsch {
2814ff6a9541SJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
281599cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
281699cafbc1SBarry Smith   PetscInt     i, nz = a->bs2 * a->i[a->mbs];
2817dd6ea824SBarry Smith   MatScalar   *aa = a->a;
281899cafbc1SBarry Smith 
281999cafbc1SBarry Smith   PetscFunctionBegin;
282099cafbc1SBarry Smith   for (i = 0; i < nz; i++) aa[i] = PetscRealPart(aa[i]);
28213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2822ff6a9541SJacob Faibussowitsch #else
2823ff6a9541SJacob Faibussowitsch   (void)A;
2824ff6a9541SJacob Faibussowitsch   return PETSC_SUCCESS;
2825ff6a9541SJacob Faibussowitsch #endif
282699cafbc1SBarry Smith }
282799cafbc1SBarry Smith 
2828ff6a9541SJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
2829d71ae5a4SJacob Faibussowitsch {
2830ff6a9541SJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
283199cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
283299cafbc1SBarry Smith   PetscInt     i, nz = a->bs2 * a->i[a->mbs];
2833dd6ea824SBarry Smith   MatScalar   *aa = a->a;
283499cafbc1SBarry Smith 
283599cafbc1SBarry Smith   PetscFunctionBegin;
283699cafbc1SBarry Smith   for (i = 0; i < nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
28373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2838ff6a9541SJacob Faibussowitsch #else
2839ff6a9541SJacob Faibussowitsch   (void)A;
2840ff6a9541SJacob Faibussowitsch   return PETSC_SUCCESS;
2841ff6a9541SJacob Faibussowitsch #endif
284299cafbc1SBarry Smith }
284399cafbc1SBarry Smith 
28443acb8795SBarry Smith /*
28452479783cSJose E. Roman     Code almost identical to MatGetColumnIJ_SeqAIJ() should share common code
28463acb8795SBarry Smith */
2847ff6a9541SJacob Faibussowitsch static PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
2848d71ae5a4SJacob Faibussowitsch {
28493acb8795SBarry Smith   Mat_SeqBAIJ *a  = (Mat_SeqBAIJ *)A->data;
28503acb8795SBarry Smith   PetscInt     bs = A->rmap->bs, i, *collengths, *cia, *cja, n = A->cmap->n / bs, m = A->rmap->n / bs;
28513acb8795SBarry Smith   PetscInt     nz = a->i[m], row, *jj, mr, col;
28523acb8795SBarry Smith 
28533acb8795SBarry Smith   PetscFunctionBegin;
28543acb8795SBarry Smith   *nn = n;
28553ba16761SJacob Faibussowitsch   if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
28565f80ce2aSJacob Faibussowitsch   PetscCheck(!symmetric, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not for BAIJ matrices");
28579566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &collengths));
28589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n + 1, &cia));
28599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &cja));
28603acb8795SBarry Smith   jj = a->j;
2861ad540459SPierre Jolivet   for (i = 0; i < nz; i++) collengths[jj[i]]++;
28623acb8795SBarry Smith   cia[0] = oshift;
2863ad540459SPierre Jolivet   for (i = 0; i < n; i++) cia[i + 1] = cia[i] + collengths[i];
28649566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(collengths, n));
28653acb8795SBarry Smith   jj = a->j;
28663acb8795SBarry Smith   for (row = 0; row < m; row++) {
28673acb8795SBarry Smith     mr = a->i[row + 1] - a->i[row];
28683acb8795SBarry Smith     for (i = 0; i < mr; i++) {
28693acb8795SBarry Smith       col = *jj++;
287026fbe8dcSKarl Rupp 
28713acb8795SBarry Smith       cja[cia[col] + collengths[col]++ - oshift] = row + oshift;
28723acb8795SBarry Smith     }
28733acb8795SBarry Smith   }
28749566063dSJacob Faibussowitsch   PetscCall(PetscFree(collengths));
28759371c9d4SSatish Balay   *ia = cia;
28769371c9d4SSatish Balay   *ja = cja;
28773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28783acb8795SBarry Smith }
28793acb8795SBarry Smith 
2880ff6a9541SJacob Faibussowitsch static PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
2881d71ae5a4SJacob Faibussowitsch {
28823acb8795SBarry Smith   PetscFunctionBegin;
28833ba16761SJacob Faibussowitsch   if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
28849566063dSJacob Faibussowitsch   PetscCall(PetscFree(*ia));
28859566063dSJacob Faibussowitsch   PetscCall(PetscFree(*ja));
28863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28873acb8795SBarry Smith }
28883acb8795SBarry Smith 
2889525d23c0SHong Zhang /*
2890525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ_Color() and MatRestoreColumnIJ_SeqBAIJ_Color() are customized from
2891525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ() and MatRestoreColumnIJ_SeqBAIJ() by adding an output
2892040ebd07SHong Zhang  spidx[], index of a->a, to be used in MatTransposeColoringCreate() and MatFDColoringCreate()
2893525d23c0SHong Zhang  */
2894d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnIJ_SeqBAIJ_Color(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscInt *spidx[], PetscBool *done)
2895d71ae5a4SJacob Faibussowitsch {
2896525d23c0SHong Zhang   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
2897c0349474SHong Zhang   PetscInt     i, *collengths, *cia, *cja, n = a->nbs, m = a->mbs;
2898525d23c0SHong Zhang   PetscInt     nz = a->i[m], row, *jj, mr, col;
2899525d23c0SHong Zhang   PetscInt    *cspidx;
2900f6d58c54SBarry Smith 
2901f6d58c54SBarry Smith   PetscFunctionBegin;
2902525d23c0SHong Zhang   *nn = n;
29033ba16761SJacob Faibussowitsch   if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
2904f6d58c54SBarry Smith 
29059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &collengths));
29069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n + 1, &cia));
29079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &cja));
29089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &cspidx));
2909525d23c0SHong Zhang   jj = a->j;
2910ad540459SPierre Jolivet   for (i = 0; i < nz; i++) collengths[jj[i]]++;
2911525d23c0SHong Zhang   cia[0] = oshift;
2912ad540459SPierre Jolivet   for (i = 0; i < n; i++) cia[i + 1] = cia[i] + collengths[i];
29139566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(collengths, n));
2914525d23c0SHong Zhang   jj = a->j;
2915525d23c0SHong Zhang   for (row = 0; row < m; row++) {
2916525d23c0SHong Zhang     mr = a->i[row + 1] - a->i[row];
2917525d23c0SHong Zhang     for (i = 0; i < mr; i++) {
2918525d23c0SHong Zhang       col                                         = *jj++;
2919525d23c0SHong Zhang       cspidx[cia[col] + collengths[col] - oshift] = a->i[row] + i; /* index of a->j */
2920525d23c0SHong Zhang       cja[cia[col] + collengths[col]++ - oshift]  = row + oshift;
2921525d23c0SHong Zhang     }
2922525d23c0SHong Zhang   }
29239566063dSJacob Faibussowitsch   PetscCall(PetscFree(collengths));
2924071fcb05SBarry Smith   *ia    = cia;
2925071fcb05SBarry Smith   *ja    = cja;
2926525d23c0SHong Zhang   *spidx = cspidx;
29273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2928f6d58c54SBarry Smith }
2929f6d58c54SBarry Smith 
2930d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreColumnIJ_SeqBAIJ_Color(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscInt *spidx[], PetscBool *done)
2931d71ae5a4SJacob Faibussowitsch {
2932525d23c0SHong Zhang   PetscFunctionBegin;
29339566063dSJacob Faibussowitsch   PetscCall(MatRestoreColumnIJ_SeqBAIJ(A, oshift, symmetric, inodecompressed, n, ia, ja, done));
29349566063dSJacob Faibussowitsch   PetscCall(PetscFree(*spidx));
29353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2936f6d58c54SBarry Smith }
293799cafbc1SBarry Smith 
293866976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_SeqBAIJ(Mat Y, PetscScalar a)
2939d71ae5a4SJacob Faibussowitsch {
29407d68702bSBarry Smith   Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)Y->data;
29417d68702bSBarry Smith 
29427d68702bSBarry Smith   PetscFunctionBegin;
294348a46eb9SPierre Jolivet   if (!Y->preallocated || !aij->nz) PetscCall(MatSeqBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL));
29449566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
29453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29467d68702bSBarry Smith }
29477d68702bSBarry Smith 
294817ea310bSPierre Jolivet PetscErrorCode MatEliminateZeros_SeqBAIJ(Mat A, PetscBool keep)
294917ea310bSPierre Jolivet {
295017ea310bSPierre Jolivet   Mat_SeqBAIJ *a      = (Mat_SeqBAIJ *)A->data;
295117ea310bSPierre Jolivet   PetscInt     fshift = 0, fshift_prev = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax, j, k;
295217ea310bSPierre Jolivet   PetscInt     m = A->rmap->N, *ailen = a->ilen;
295317ea310bSPierre Jolivet   PetscInt     mbs = a->mbs, bs2 = a->bs2, rmax = 0;
295417ea310bSPierre Jolivet   MatScalar   *aa = a->a, *ap;
295517ea310bSPierre Jolivet   PetscBool    zero;
295617ea310bSPierre Jolivet 
295717ea310bSPierre Jolivet   PetscFunctionBegin;
295817ea310bSPierre Jolivet   PetscCheck(A->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot eliminate zeros for unassembled matrix");
295917ea310bSPierre Jolivet   if (m) rmax = ailen[0];
296017ea310bSPierre Jolivet   for (i = 1; i <= mbs; i++) {
296117ea310bSPierre Jolivet     for (k = ai[i - 1]; k < ai[i]; k++) {
296217ea310bSPierre Jolivet       zero = PETSC_TRUE;
296317ea310bSPierre Jolivet       ap   = aa + bs2 * k;
296417ea310bSPierre Jolivet       for (j = 0; j < bs2 && zero; j++) {
296517ea310bSPierre Jolivet         if (ap[j] != 0.0) zero = PETSC_FALSE;
296617ea310bSPierre Jolivet       }
296717ea310bSPierre Jolivet       if (zero && (aj[k] != i - 1 || !keep)) fshift++;
296817ea310bSPierre Jolivet       else {
296917ea310bSPierre Jolivet         if (zero && aj[k] == i - 1) PetscCall(PetscInfo(A, "Keep the diagonal block at row %" PetscInt_FMT "\n", i - 1));
297017ea310bSPierre Jolivet         aj[k - fshift] = aj[k];
297117ea310bSPierre Jolivet         PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2));
297217ea310bSPierre Jolivet       }
297317ea310bSPierre Jolivet     }
297417ea310bSPierre Jolivet     ai[i - 1] -= fshift_prev;
297517ea310bSPierre Jolivet     fshift_prev  = fshift;
297617ea310bSPierre Jolivet     ailen[i - 1] = imax[i - 1] = ai[i] - fshift - ai[i - 1];
297717ea310bSPierre Jolivet     a->nonzerorowcnt += ((ai[i] - fshift - ai[i - 1]) > 0);
297817ea310bSPierre Jolivet     rmax = PetscMax(rmax, ailen[i - 1]);
297917ea310bSPierre Jolivet   }
298017ea310bSPierre Jolivet   if (fshift) {
298117ea310bSPierre Jolivet     if (mbs) {
298217ea310bSPierre Jolivet       ai[mbs] -= fshift;
298317ea310bSPierre Jolivet       a->nz = ai[mbs];
298417ea310bSPierre Jolivet     }
298517ea310bSPierre Jolivet     PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; zeros eliminated: %" PetscInt_FMT "; nonzeros left: %" PetscInt_FMT "\n", m, A->cmap->n, fshift, a->nz));
298617ea310bSPierre Jolivet     A->nonzerostate++;
298717ea310bSPierre Jolivet     A->info.nz_unneeded += (PetscReal)fshift;
298817ea310bSPierre Jolivet     a->rmax = rmax;
298917ea310bSPierre Jolivet     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
299017ea310bSPierre Jolivet     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
299117ea310bSPierre Jolivet   }
299217ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
299317ea310bSPierre Jolivet }
299417ea310bSPierre Jolivet 
2995dec0b466SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2996cc2dc46cSBarry Smith                                        MatGetRow_SeqBAIJ,
2997cc2dc46cSBarry Smith                                        MatRestoreRow_SeqBAIJ,
2998cc2dc46cSBarry Smith                                        MatMult_SeqBAIJ_N,
299997304618SKris Buschelman                                        /* 4*/ MatMultAdd_SeqBAIJ_N,
30007c922b88SBarry Smith                                        MatMultTranspose_SeqBAIJ,
30017c922b88SBarry Smith                                        MatMultTransposeAdd_SeqBAIJ,
3002f4259b30SLisandro Dalcin                                        NULL,
3003f4259b30SLisandro Dalcin                                        NULL,
3004f4259b30SLisandro Dalcin                                        NULL,
3005f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
3006cc2dc46cSBarry Smith                                        MatLUFactor_SeqBAIJ,
3007f4259b30SLisandro Dalcin                                        NULL,
3008f4259b30SLisandro Dalcin                                        NULL,
3009f2501298SSatish Balay                                        MatTranspose_SeqBAIJ,
301097304618SKris Buschelman                                        /* 15*/ MatGetInfo_SeqBAIJ,
3011cc2dc46cSBarry Smith                                        MatEqual_SeqBAIJ,
3012cc2dc46cSBarry Smith                                        MatGetDiagonal_SeqBAIJ,
3013cc2dc46cSBarry Smith                                        MatDiagonalScale_SeqBAIJ,
3014cc2dc46cSBarry Smith                                        MatNorm_SeqBAIJ,
3015f4259b30SLisandro Dalcin                                        /* 20*/ NULL,
3016cc2dc46cSBarry Smith                                        MatAssemblyEnd_SeqBAIJ,
3017cc2dc46cSBarry Smith                                        MatSetOption_SeqBAIJ,
3018cc2dc46cSBarry Smith                                        MatZeroEntries_SeqBAIJ,
3019d519adbfSMatthew Knepley                                        /* 24*/ MatZeroRows_SeqBAIJ,
3020f4259b30SLisandro Dalcin                                        NULL,
3021f4259b30SLisandro Dalcin                                        NULL,
3022f4259b30SLisandro Dalcin                                        NULL,
3023f4259b30SLisandro Dalcin                                        NULL,
302426cec326SBarry Smith                                        /* 29*/ MatSetUp_Seq_Hash,
3025f4259b30SLisandro Dalcin                                        NULL,
3026f4259b30SLisandro Dalcin                                        NULL,
3027f4259b30SLisandro Dalcin                                        NULL,
3028f4259b30SLisandro Dalcin                                        NULL,
3029d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_SeqBAIJ,
3030f4259b30SLisandro Dalcin                                        NULL,
3031f4259b30SLisandro Dalcin                                        NULL,
3032cc2dc46cSBarry Smith                                        MatILUFactor_SeqBAIJ,
3033f4259b30SLisandro Dalcin                                        NULL,
3034d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_SeqBAIJ,
30357dae84e0SHong Zhang                                        MatCreateSubMatrices_SeqBAIJ,
3036cc2dc46cSBarry Smith                                        MatIncreaseOverlap_SeqBAIJ,
3037cc2dc46cSBarry Smith                                        MatGetValues_SeqBAIJ,
30383c896bc6SHong Zhang                                        MatCopy_SeqBAIJ,
3039f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
3040cc2dc46cSBarry Smith                                        MatScale_SeqBAIJ,
30417d68702bSBarry Smith                                        MatShift_SeqBAIJ,
3042f4259b30SLisandro Dalcin                                        NULL,
304397b48c8fSBarry Smith                                        MatZeroRowsColumns_SeqBAIJ,
3044f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
30453b2fbd54SBarry Smith                                        MatGetRowIJ_SeqBAIJ,
304692c4ed94SBarry Smith                                        MatRestoreRowIJ_SeqBAIJ,
30473acb8795SBarry Smith                                        MatGetColumnIJ_SeqBAIJ,
30483acb8795SBarry Smith                                        MatRestoreColumnIJ_SeqBAIJ,
304993dfae19SHong Zhang                                        /* 54*/ MatFDColoringCreate_SeqXAIJ,
3050f4259b30SLisandro Dalcin                                        NULL,
3051f4259b30SLisandro Dalcin                                        NULL,
3052090001bdSToby Isaac                                        NULL,
3053d3825aa8SBarry Smith                                        MatSetValuesBlocked_SeqBAIJ,
30547dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_SeqBAIJ,
3055b9b97703SBarry Smith                                        MatDestroy_SeqBAIJ,
3056b9b97703SBarry Smith                                        MatView_SeqBAIJ,
3057f4259b30SLisandro Dalcin                                        NULL,
3058f4259b30SLisandro Dalcin                                        NULL,
3059f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
3060f4259b30SLisandro Dalcin                                        NULL,
3061f4259b30SLisandro Dalcin                                        NULL,
3062f4259b30SLisandro Dalcin                                        NULL,
30638bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_SeqBAIJ,
30648bb0f5c6SPierre Jolivet                                        /* 69*/ NULL,
3065c87e5d42SMatthew Knepley                                        MatConvert_Basic,
3066f4259b30SLisandro Dalcin                                        NULL,
3067f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
3068f4259b30SLisandro Dalcin                                        NULL,
30698bb0f5c6SPierre Jolivet                                        /* 74*/ NULL,
3070f4259b30SLisandro Dalcin                                        NULL,
3071f4259b30SLisandro Dalcin                                        NULL,
3072f4259b30SLisandro Dalcin                                        NULL,
30735bba2384SShri Abhyankar                                        MatLoad_SeqBAIJ,
30748bb0f5c6SPierre Jolivet                                        /* 79*/ NULL,
30758bb0f5c6SPierre Jolivet                                        NULL,
30768bb0f5c6SPierre Jolivet                                        NULL,
30778bb0f5c6SPierre Jolivet                                        NULL,
30788bb0f5c6SPierre Jolivet                                        NULL,
3079f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
3080f4259b30SLisandro Dalcin                                        NULL,
3081f4259b30SLisandro Dalcin                                        NULL,
3082f4259b30SLisandro Dalcin                                        NULL,
3083f4259b30SLisandro Dalcin                                        NULL,
3084f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
3085f4259b30SLisandro Dalcin                                        NULL,
3086f4259b30SLisandro Dalcin                                        NULL,
3087f4259b30SLisandro Dalcin                                        NULL,
30888bb0f5c6SPierre Jolivet                                        MatConjugate_SeqBAIJ,
3089f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
3090f4259b30SLisandro Dalcin                                        NULL,
30918bb0f5c6SPierre Jolivet                                        MatRealPart_SeqBAIJ,
30928bb0f5c6SPierre Jolivet                                        MatImaginaryPart_SeqBAIJ,
3093f4259b30SLisandro Dalcin                                        NULL,
3094f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
3095f4259b30SLisandro Dalcin                                        NULL,
3096f4259b30SLisandro Dalcin                                        NULL,
3097f4259b30SLisandro Dalcin                                        NULL,
30988bb0f5c6SPierre Jolivet                                        NULL,
30998bb0f5c6SPierre Jolivet                                        /*104*/ MatMissingDiagonal_SeqBAIJ,
31008bb0f5c6SPierre Jolivet                                        NULL,
31018bb0f5c6SPierre Jolivet                                        NULL,
3102f4259b30SLisandro Dalcin                                        NULL,
3103f4259b30SLisandro Dalcin                                        NULL,
3104f4259b30SLisandro Dalcin                                        /*109*/ NULL,
3105f4259b30SLisandro Dalcin                                        NULL,
3106f4259b30SLisandro Dalcin                                        NULL,
3107547795f9SHong Zhang                                        MatMultHermitianTranspose_SeqBAIJ,
3108d6037b41SHong Zhang                                        MatMultHermitianTransposeAdd_SeqBAIJ,
31098bb0f5c6SPierre Jolivet                                        /*114*/ NULL,
3110f4259b30SLisandro Dalcin                                        NULL,
3111857cbf51SRichard Tran Mills                                        MatGetColumnReductions_SeqBAIJ,
31123964eb88SJed Brown                                        MatInvertBlockDiagonal_SeqBAIJ,
3113f4259b30SLisandro Dalcin                                        NULL,
31148bb0f5c6SPierre Jolivet                                        /*119*/ NULL,
3115f4259b30SLisandro Dalcin                                        NULL,
3116f4259b30SLisandro Dalcin                                        NULL,
3117f4259b30SLisandro Dalcin                                        NULL,
3118f4259b30SLisandro Dalcin                                        NULL,
31198bb0f5c6SPierre Jolivet                                        /*124*/ NULL,
31208bb0f5c6SPierre Jolivet                                        NULL,
31218bb0f5c6SPierre Jolivet                                        NULL,
31228bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_Default,
31238bb0f5c6SPierre Jolivet                                        NULL,
31248bb0f5c6SPierre Jolivet                                        /*129*/ MatFDColoringSetUp_SeqXAIJ,
31258bb0f5c6SPierre Jolivet                                        NULL,
31268bb0f5c6SPierre Jolivet                                        MatCreateMPIMatConcatenateSeqMat_SeqBAIJ,
31278bb0f5c6SPierre Jolivet                                        MatDestroySubMatrices_SeqBAIJ,
31288bb0f5c6SPierre Jolivet                                        NULL,
3129f4259b30SLisandro Dalcin                                        /*134*/ NULL,
3130f4259b30SLisandro Dalcin                                        NULL,
3131f4259b30SLisandro Dalcin                                        NULL,
3132eede4a3fSMark Adams                                        MatEliminateZeros_SeqBAIJ,
31334cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_SeqBAIJ,
31348bb0f5c6SPierre Jolivet                                        /*139*/ NULL,
313542ce410bSJunchao Zhang                                        NULL,
313642ce410bSJunchao Zhang                                        NULL,
313703db1824SAlex Lindsay                                        MatCopyHashToXAIJ_Seq_Hash,
313803db1824SAlex Lindsay                                        NULL};
31392593348eSBarry Smith 
3140ff6a9541SJacob Faibussowitsch static PetscErrorCode MatStoreValues_SeqBAIJ(Mat mat)
3141d71ae5a4SJacob Faibussowitsch {
31423e90b805SBarry Smith   Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data;
31438ece6314SShri Abhyankar   PetscInt     nz  = aij->i[aij->mbs] * aij->bs2;
31443e90b805SBarry Smith 
31453e90b805SBarry Smith   PetscFunctionBegin;
31465f80ce2aSJacob Faibussowitsch   PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
31473e90b805SBarry Smith 
31483e90b805SBarry Smith   /* allocate space for values if not already there */
3149ff6a9541SJacob Faibussowitsch   if (!aij->saved_values) PetscCall(PetscMalloc1(nz + 1, &aij->saved_values));
31503e90b805SBarry Smith 
31513e90b805SBarry Smith   /* copy values over */
31529566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(aij->saved_values, aij->a, nz));
31533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31543e90b805SBarry Smith }
31553e90b805SBarry Smith 
3156ff6a9541SJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_SeqBAIJ(Mat mat)
3157d71ae5a4SJacob Faibussowitsch {
31583e90b805SBarry Smith   Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data;
31598ece6314SShri Abhyankar   PetscInt     nz  = aij->i[aij->mbs] * aij->bs2;
31603e90b805SBarry Smith 
31613e90b805SBarry Smith   PetscFunctionBegin;
31625f80ce2aSJacob Faibussowitsch   PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
31635f80ce2aSJacob Faibussowitsch   PetscCheck(aij->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");
31643e90b805SBarry Smith 
31653e90b805SBarry Smith   /* copy values over */
31669566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(aij->a, aij->saved_values, nz));
31673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31683e90b805SBarry Smith }
31693e90b805SBarry Smith 
3170cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
3171cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType, MatReuse, Mat *);
3172273d9f13SBarry Smith 
3173f9663b93SPierre Jolivet PetscErrorCode MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[])
3174d71ae5a4SJacob Faibussowitsch {
3175ad79cf63SBarry Smith   Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data;
3176535b19f3SBarry Smith   PetscInt     i, mbs, nbs, bs2;
31778afaa268SBarry Smith   PetscBool    flg = PETSC_FALSE, skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE;
3178a23d5eceSKris Buschelman 
3179a23d5eceSKris Buschelman   PetscFunctionBegin;
3180ad79cf63SBarry Smith   if (B->hash_active) {
3181ad79cf63SBarry Smith     PetscInt bs;
3182aea10558SJacob Faibussowitsch     B->ops[0] = b->cops;
3183ad79cf63SBarry Smith     PetscCall(PetscHMapIJVDestroy(&b->ht));
3184ad79cf63SBarry Smith     PetscCall(MatGetBlockSize(B, &bs));
3185ad79cf63SBarry Smith     if (bs > 1) PetscCall(PetscHSetIJDestroy(&b->bht));
3186ad79cf63SBarry Smith     PetscCall(PetscFree(b->dnz));
3187ad79cf63SBarry Smith     PetscCall(PetscFree(b->bdnz));
3188ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
3189ad79cf63SBarry Smith   }
31902576faa2SJed Brown   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;
3191ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
3192ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
3193ab93d7beSBarry Smith     nz             = 0;
3194ab93d7beSBarry Smith   }
31958c07d4e3SBarry Smith 
319658b7e2c1SStefano Zampini   PetscCall(MatSetBlockSize(B, bs));
31979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
31989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
31999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
3200899cda47SBarry Smith 
3201899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
3202899cda47SBarry Smith 
3203d0f46423SBarry Smith   mbs = B->rmap->n / bs;
3204d0f46423SBarry Smith   nbs = B->cmap->n / bs;
3205a23d5eceSKris Buschelman   bs2 = bs * bs;
3206a23d5eceSKris Buschelman 
32075f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n && nbs * bs == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number rows %" PetscInt_FMT ", cols %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, B->cmap->n, bs);
3208a23d5eceSKris Buschelman 
3209a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
32105f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nz cannot be less than 0: value %" PetscInt_FMT, nz);
3211a23d5eceSKris Buschelman   if (nnz) {
3212a23d5eceSKris Buschelman     for (i = 0; i < mbs; i++) {
32135f80ce2aSJacob Faibussowitsch       PetscCheck(nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, nnz[i]);
32145f80ce2aSJacob Faibussowitsch       PetscCheck(nnz[i] <= nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be greater than block row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, nnz[i], nbs);
3215a23d5eceSKris Buschelman     }
3216a23d5eceSKris Buschelman   }
3217a23d5eceSKris Buschelman 
3218d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Optimize options for SEQBAIJ matrix 2 ", "Mat");
32199566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_no_unroll", "Do not optimize for block size (slow)", NULL, flg, &flg, NULL));
3220d0609cedSBarry Smith   PetscOptionsEnd();
32218c07d4e3SBarry Smith 
3222a23d5eceSKris Buschelman   if (!flg) {
3223a23d5eceSKris Buschelman     switch (bs) {
3224a23d5eceSKris Buschelman     case 1:
3225a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_1;
3226a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_1;
3227a23d5eceSKris Buschelman       break;
3228a23d5eceSKris Buschelman     case 2:
3229a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_2;
3230a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_2;
3231a23d5eceSKris Buschelman       break;
3232a23d5eceSKris Buschelman     case 3:
3233a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_3;
3234a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_3;
3235a23d5eceSKris Buschelman       break;
3236a23d5eceSKris Buschelman     case 4:
3237a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_4;
3238a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_4;
3239a23d5eceSKris Buschelman       break;
3240a23d5eceSKris Buschelman     case 5:
3241a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_5;
3242a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_5;
3243a23d5eceSKris Buschelman       break;
3244a23d5eceSKris Buschelman     case 6:
3245a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_6;
3246a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_6;
3247a23d5eceSKris Buschelman       break;
3248a23d5eceSKris Buschelman     case 7:
3249a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_7;
3250a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_7;
3251a23d5eceSKris Buschelman       break;
32529371c9d4SSatish Balay     case 9: {
32536679dcc1SBarry Smith       PetscInt version = 1;
32549566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)B)->prefix, "-mat_baij_mult_version", &version, NULL));
32556679dcc1SBarry Smith       switch (version) {
32565f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
32576679dcc1SBarry Smith       case 1:
325896e086a2SDaniel Kokron         B->ops->mult    = MatMult_SeqBAIJ_9_AVX2;
325996e086a2SDaniel Kokron         B->ops->multadd = MatMultAdd_SeqBAIJ_9_AVX2;
3260835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs));
32616679dcc1SBarry Smith         break;
32626679dcc1SBarry Smith #endif
32636679dcc1SBarry Smith       default:
326496e086a2SDaniel Kokron         B->ops->mult    = MatMult_SeqBAIJ_N;
326596e086a2SDaniel Kokron         B->ops->multadd = MatMultAdd_SeqBAIJ_N;
3266835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs));
326796e086a2SDaniel Kokron         break;
32686679dcc1SBarry Smith       }
32696679dcc1SBarry Smith       break;
32706679dcc1SBarry Smith     }
3271ebada01fSBarry Smith     case 11:
3272ebada01fSBarry Smith       B->ops->mult    = MatMult_SeqBAIJ_11;
3273ebada01fSBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_11;
3274ebada01fSBarry Smith       break;
32759371c9d4SSatish Balay     case 12: {
32766679dcc1SBarry Smith       PetscInt version = 1;
32779566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)B)->prefix, "-mat_baij_mult_version", &version, NULL));
32786679dcc1SBarry Smith       switch (version) {
32796679dcc1SBarry Smith       case 1:
32806679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_12_ver1;
32816679dcc1SBarry Smith         B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1;
3282835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs));
32838ab949d8SShri Abhyankar         break;
32846679dcc1SBarry Smith       case 2:
32856679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_12_ver2;
32866679dcc1SBarry Smith         B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver2;
3287835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs));
32886679dcc1SBarry Smith         break;
32896679dcc1SBarry Smith #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
32906679dcc1SBarry Smith       case 3:
32916679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_12_AVX2;
32926679dcc1SBarry Smith         B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1;
3293835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs));
32946679dcc1SBarry Smith         break;
32956679dcc1SBarry Smith #endif
3296a23d5eceSKris Buschelman       default:
3297a23d5eceSKris Buschelman         B->ops->mult    = MatMult_SeqBAIJ_N;
3298a23d5eceSKris Buschelman         B->ops->multadd = MatMultAdd_SeqBAIJ_N;
3299835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs));
33006679dcc1SBarry Smith         break;
33016679dcc1SBarry Smith       }
33026679dcc1SBarry Smith       break;
33036679dcc1SBarry Smith     }
33049371c9d4SSatish Balay     case 15: {
33056679dcc1SBarry Smith       PetscInt version = 1;
33069566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)B)->prefix, "-mat_baij_mult_version", &version, NULL));
33076679dcc1SBarry Smith       switch (version) {
33086679dcc1SBarry Smith       case 1:
33096679dcc1SBarry Smith         B->ops->mult = MatMult_SeqBAIJ_15_ver1;
3310835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs));
33116679dcc1SBarry Smith         break;
33126679dcc1SBarry Smith       case 2:
33136679dcc1SBarry Smith         B->ops->mult = MatMult_SeqBAIJ_15_ver2;
3314835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs));
33156679dcc1SBarry Smith         break;
33166679dcc1SBarry Smith       case 3:
33176679dcc1SBarry Smith         B->ops->mult = MatMult_SeqBAIJ_15_ver3;
3318835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs));
33196679dcc1SBarry Smith         break;
33206679dcc1SBarry Smith       case 4:
33216679dcc1SBarry Smith         B->ops->mult = MatMult_SeqBAIJ_15_ver4;
3322835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", version, bs));
33236679dcc1SBarry Smith         break;
33246679dcc1SBarry Smith       default:
33256679dcc1SBarry Smith         B->ops->mult = MatMult_SeqBAIJ_N;
3326835f2295SStefano Zampini         PetscCall(PetscInfo(B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs));
33276679dcc1SBarry Smith         break;
33286679dcc1SBarry Smith       }
33296679dcc1SBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
33306679dcc1SBarry Smith       break;
33316679dcc1SBarry Smith     }
33326679dcc1SBarry Smith     default:
33336679dcc1SBarry Smith       B->ops->mult    = MatMult_SeqBAIJ_N;
33346679dcc1SBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
3335835f2295SStefano Zampini       PetscCall(PetscInfo(B, "Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n", bs));
3336a23d5eceSKris Buschelman       break;
3337a23d5eceSKris Buschelman     }
3338a23d5eceSKris Buschelman   }
3339e48d15efSToby Isaac   B->ops->sor = MatSOR_SeqBAIJ;
3340a23d5eceSKris Buschelman   b->mbs      = mbs;
3341a23d5eceSKris Buschelman   b->nbs      = nbs;
3342ab93d7beSBarry Smith   if (!skipallocation) {
33432ee49352SLisandro Dalcin     if (!b->imax) {
33449566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mbs, &b->imax, mbs, &b->ilen));
334526fbe8dcSKarl Rupp 
33464fd072dbSBarry Smith       b->free_imax_ilen = PETSC_TRUE;
33472ee49352SLisandro Dalcin     }
3348ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
334926fbe8dcSKarl Rupp     for (i = 0; i < mbs; i++) b->ilen[i] = 0;
3350a23d5eceSKris Buschelman     if (!nnz) {
3351a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
3352c62bd62aSJed Brown       else if (nz < 0) nz = 1;
33535d2a9ed1SStefano Zampini       nz = PetscMin(nz, nbs);
3354a23d5eceSKris Buschelman       for (i = 0; i < mbs; i++) b->imax[i] = nz;
33559566063dSJacob Faibussowitsch       PetscCall(PetscIntMultError(nz, mbs, &nz));
3356a23d5eceSKris Buschelman     } else {
3357c73702f5SBarry Smith       PetscInt64 nz64 = 0;
33589371c9d4SSatish Balay       for (i = 0; i < mbs; i++) {
33599371c9d4SSatish Balay         b->imax[i] = nnz[i];
33609371c9d4SSatish Balay         nz64 += nnz[i];
33619371c9d4SSatish Balay       }
33629566063dSJacob Faibussowitsch       PetscCall(PetscIntCast(nz64, &nz));
3363a23d5eceSKris Buschelman     }
3364a23d5eceSKris Buschelman 
3365a23d5eceSKris Buschelman     /* allocate the matrix space */
33669566063dSJacob Faibussowitsch     PetscCall(MatSeqXAIJFreeAIJ(B, &b->a, &b->j, &b->i));
33679f0612e4SBarry Smith     PetscCall(PetscShmgetAllocateArray(nz, sizeof(PetscInt), (void **)&b->j));
33689f0612e4SBarry Smith     PetscCall(PetscShmgetAllocateArray(B->rmap->N + 1, sizeof(PetscInt), (void **)&b->i));
3369672ba085SHong Zhang     if (B->structure_only) {
33709f0612e4SBarry Smith       b->free_a = PETSC_FALSE;
3371672ba085SHong Zhang     } else {
33726679dcc1SBarry Smith       PetscInt nzbs2 = 0;
33739566063dSJacob Faibussowitsch       PetscCall(PetscIntMultError(nz, bs2, &nzbs2));
33749f0612e4SBarry Smith       PetscCall(PetscShmgetAllocateArray(nzbs2, sizeof(PetscScalar), (void **)&b->a));
33759f0612e4SBarry Smith       b->free_a = PETSC_TRUE;
33769566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(b->a, nz * bs2));
3377672ba085SHong Zhang     }
3378672ba085SHong Zhang     b->free_ij = PETSC_TRUE;
33799f0612e4SBarry Smith     PetscCall(PetscArrayzero(b->j, nz));
3380672ba085SHong Zhang 
3381a23d5eceSKris Buschelman     b->i[0] = 0;
3382ad540459SPierre Jolivet     for (i = 1; i < mbs + 1; i++) b->i[i] = b->i[i - 1] + b->imax[i - 1];
3383e811da20SHong Zhang   } else {
3384e6b907acSBarry Smith     b->free_a  = PETSC_FALSE;
3385e6b907acSBarry Smith     b->free_ij = PETSC_FALSE;
3386ab93d7beSBarry Smith   }
3387a23d5eceSKris Buschelman 
3388a23d5eceSKris Buschelman   b->bs2              = bs2;
3389a23d5eceSKris Buschelman   b->mbs              = mbs;
3390a23d5eceSKris Buschelman   b->nz               = 0;
3391b32cb4a7SJed Brown   b->maxnz            = nz;
3392b32cb4a7SJed Brown   B->info.nz_unneeded = (PetscReal)b->maxnz * bs2;
3393cb7b82ddSBarry Smith   B->was_assembled    = PETSC_FALSE;
3394cb7b82ddSBarry Smith   B->assembled        = PETSC_FALSE;
33959566063dSJacob Faibussowitsch   if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
33963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3397a23d5eceSKris Buschelman }
3398a23d5eceSKris Buschelman 
339966976f2fSJacob Faibussowitsch static PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
3400d71ae5a4SJacob Faibussowitsch {
3401725b52f3SLisandro Dalcin   PetscInt     i, m, nz, nz_max = 0, *nnz;
3402f4259b30SLisandro Dalcin   PetscScalar *values      = NULL;
3403d47bf9aaSJed Brown   PetscBool    roworiented = ((Mat_SeqBAIJ *)B->data)->roworiented;
3404725b52f3SLisandro Dalcin 
3405725b52f3SLisandro Dalcin   PetscFunctionBegin;
34065f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
34079566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
34089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
34099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
34109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
34119566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
3412d0f46423SBarry Smith   m = B->rmap->n / bs;
3413725b52f3SLisandro Dalcin 
34145f80ce2aSJacob Faibussowitsch   PetscCheck(ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
34159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &nnz));
3416725b52f3SLisandro Dalcin   for (i = 0; i < m; i++) {
3417cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
34185f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
3419725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
3420725b52f3SLisandro Dalcin     nnz[i] = nz;
3421725b52f3SLisandro Dalcin   }
34229566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(B, bs, 0, nnz));
34239566063dSJacob Faibussowitsch   PetscCall(PetscFree(nnz));
3424725b52f3SLisandro Dalcin 
3425725b52f3SLisandro Dalcin   values = (PetscScalar *)V;
342648a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * (nz_max + 1), &values));
3427725b52f3SLisandro Dalcin   for (i = 0; i < m; i++) {
3428cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
3429cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
3430bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {
3431cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
34329566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_SeqBAIJ(B, 1, &i, ncols, icols, svals, INSERT_VALUES));
34333adadaf3SJed Brown     } else {
34343adadaf3SJed Brown       PetscInt j;
34353adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
34363adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
34379566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_SeqBAIJ(B, 1, &i, 1, &icols[j], svals, INSERT_VALUES));
34383adadaf3SJed Brown       }
34393adadaf3SJed Brown     }
3440725b52f3SLisandro Dalcin   }
34419566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
34429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
34439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
34449566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
34453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3446725b52f3SLisandro Dalcin }
3447725b52f3SLisandro Dalcin 
3448cda14afcSprj- /*@C
344911a5261eSBarry Smith   MatSeqBAIJGetArray - gives read/write access to the array where the data for a `MATSEQBAIJ` matrix is stored
3450cda14afcSprj- 
3451cda14afcSprj-   Not Collective
3452cda14afcSprj- 
3453cda14afcSprj-   Input Parameter:
3454fe59aa6dSJacob Faibussowitsch . A - a `MATSEQBAIJ` matrix
3455cda14afcSprj- 
3456cda14afcSprj-   Output Parameter:
3457cda14afcSprj- . array - pointer to the data
3458cda14afcSprj- 
3459cda14afcSprj-   Level: intermediate
3460cda14afcSprj- 
34611cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQBAIJ`, `MatSeqBAIJRestoreArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`
3462cda14afcSprj- @*/
34635d83a8b1SBarry Smith PetscErrorCode MatSeqBAIJGetArray(Mat A, PetscScalar *array[])
3464d71ae5a4SJacob Faibussowitsch {
3465cda14afcSprj-   PetscFunctionBegin;
3466cac4c232SBarry Smith   PetscUseMethod(A, "MatSeqBAIJGetArray_C", (Mat, PetscScalar **), (A, array));
34673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3468cda14afcSprj- }
3469cda14afcSprj- 
3470cda14afcSprj- /*@C
347111a5261eSBarry Smith   MatSeqBAIJRestoreArray - returns access to the array where the data for a `MATSEQBAIJ` matrix is stored obtained by `MatSeqBAIJGetArray()`
3472cda14afcSprj- 
3473cda14afcSprj-   Not Collective
3474cda14afcSprj- 
3475cda14afcSprj-   Input Parameters:
3476fe59aa6dSJacob Faibussowitsch + A     - a `MATSEQBAIJ` matrix
3477cda14afcSprj- - array - pointer to the data
3478cda14afcSprj- 
3479cda14afcSprj-   Level: intermediate
3480cda14afcSprj- 
34811cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSeqBAIJGetArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`
3482cda14afcSprj- @*/
34835d83a8b1SBarry Smith PetscErrorCode MatSeqBAIJRestoreArray(Mat A, PetscScalar *array[])
3484d71ae5a4SJacob Faibussowitsch {
3485cda14afcSprj-   PetscFunctionBegin;
3486cac4c232SBarry Smith   PetscUseMethod(A, "MatSeqBAIJRestoreArray_C", (Mat, PetscScalar **), (A, array));
34873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3488cda14afcSprj- }
3489cda14afcSprj- 
34900bad9183SKris Buschelman /*MC
3491fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
34920bad9183SKris Buschelman    block sparse compressed row format.
34930bad9183SKris Buschelman 
34940bad9183SKris Buschelman    Options Database Keys:
349520f4b53cSBarry Smith + -mat_type seqbaij - sets the matrix type to `MATSEQBAIJ` during a call to `MatSetFromOptions()`
34966679dcc1SBarry Smith - -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS)
34970bad9183SKris Buschelman 
34980bad9183SKris Buschelman    Level: beginner
34990cd7f59aSBarry Smith 
35000cd7f59aSBarry Smith    Notes:
350111a5261eSBarry Smith    `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
350211a5261eSBarry Smith    space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
35030bad9183SKris Buschelman 
35042ef1f0ffSBarry Smith    Run with `-info` to see what version of the matrix-vector product is being used
35056679dcc1SBarry Smith 
35061cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`
35070bad9183SKris Buschelman M*/
35080bad9183SKris Buschelman 
3509cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType, MatReuse, Mat *);
3510b24902e0SBarry Smith 
3511d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJ(Mat B)
3512d71ae5a4SJacob Faibussowitsch {
3513c1ac3661SBarry Smith   PetscMPIInt  size;
3514b6490206SBarry Smith   Mat_SeqBAIJ *b;
35153b2fbd54SBarry Smith 
35163a40ed3dSBarry Smith   PetscFunctionBegin;
35179566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
35185f80ce2aSJacob Faibussowitsch   PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Comm must be of size 1");
3519b6490206SBarry Smith 
35204dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
3521b0a32e0cSBarry Smith   B->data   = (void *)b;
3522aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
352326fbe8dcSKarl Rupp 
3524f4259b30SLisandro Dalcin   b->row          = NULL;
3525f4259b30SLisandro Dalcin   b->col          = NULL;
3526f4259b30SLisandro Dalcin   b->icol         = NULL;
35272593348eSBarry Smith   b->reallocs     = 0;
3528f4259b30SLisandro Dalcin   b->saved_values = NULL;
35292593348eSBarry Smith 
3530c4992f7dSBarry Smith   b->roworiented        = PETSC_TRUE;
35312593348eSBarry Smith   b->nonew              = 0;
3532f4259b30SLisandro Dalcin   b->diag               = NULL;
3533f4259b30SLisandro Dalcin   B->spptr              = NULL;
3534b32cb4a7SJed Brown   B->info.nz_unneeded   = (PetscReal)b->maxnz * b->bs2;
3535a9817697SBarry Smith   b->keepnonzeropattern = PETSC_FALSE;
35364e220ebcSLois Curfman McInnes 
35379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJGetArray_C", MatSeqBAIJGetArray_SeqBAIJ));
35389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJRestoreArray_C", MatSeqBAIJRestoreArray_SeqBAIJ));
35399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqBAIJ));
35409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqBAIJ));
35419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJSetColumnIndices_C", MatSeqBAIJSetColumnIndices_SeqBAIJ));
35429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_seqaij_C", MatConvert_SeqBAIJ_SeqAIJ));
35439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_seqsbaij_C", MatConvert_SeqBAIJ_SeqSBAIJ));
35449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJSetPreallocation_C", MatSeqBAIJSetPreallocation_SeqBAIJ));
35459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqBAIJSetPreallocationCSR_C", MatSeqBAIJSetPreallocationCSR_SeqBAIJ));
35469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_SeqBAIJ));
35477ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
35489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_hypre_C", MatConvert_AIJ_HYPRE));
35497ea3e4caSstefano_zampini #endif
35509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqbaij_is_C", MatConvert_XAIJ_IS));
35519566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQBAIJ));
35523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35532593348eSBarry Smith }
35542593348eSBarry Smith 
3555d6acfc2dSPierre Jolivet PETSC_INTERN PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace)
3556d71ae5a4SJacob Faibussowitsch {
3557b24902e0SBarry Smith   Mat_SeqBAIJ *c = (Mat_SeqBAIJ *)C->data, *a = (Mat_SeqBAIJ *)A->data;
3558a96a251dSBarry Smith   PetscInt     i, mbs = a->mbs, nz = a->nz, bs2 = a->bs2;
3559de6a44a3SBarry Smith 
35603a40ed3dSBarry Smith   PetscFunctionBegin;
356131fe6a7dSBarry Smith   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Cannot duplicate unassembled matrix");
35625f80ce2aSJacob Faibussowitsch   PetscCheck(a->i[mbs] == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupt matrix");
35632593348eSBarry Smith 
35644fd072dbSBarry Smith   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
35654fd072dbSBarry Smith     c->imax           = a->imax;
35664fd072dbSBarry Smith     c->ilen           = a->ilen;
35674fd072dbSBarry Smith     c->free_imax_ilen = PETSC_FALSE;
35684fd072dbSBarry Smith   } else {
35699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(mbs, &c->imax, mbs, &c->ilen));
3570b6490206SBarry Smith     for (i = 0; i < mbs; i++) {
35712593348eSBarry Smith       c->imax[i] = a->imax[i];
35722593348eSBarry Smith       c->ilen[i] = a->ilen[i];
35732593348eSBarry Smith     }
35744fd072dbSBarry Smith     c->free_imax_ilen = PETSC_TRUE;
35754fd072dbSBarry Smith   }
35762593348eSBarry Smith 
35772593348eSBarry Smith   /* allocate the matrix space */
357816a2bf60SHong Zhang   if (mallocmatspace) {
35794fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
35809f0612e4SBarry Smith       PetscCall(PetscShmgetAllocateArray(bs2 * nz, sizeof(PetscScalar), (void **)&c->a));
35819f0612e4SBarry Smith       PetscCall(PetscArrayzero(c->a, bs2 * nz));
35829f0612e4SBarry Smith       c->free_a       = PETSC_TRUE;
35834fd072dbSBarry Smith       c->i            = a->i;
35844fd072dbSBarry Smith       c->j            = a->j;
3585379be0ddSLisandro Dalcin       c->free_ij      = PETSC_FALSE;
35864fd072dbSBarry Smith       c->parent       = A;
35871e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
35881e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
358926fbe8dcSKarl Rupp 
35909566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)A));
35919566063dSJacob Faibussowitsch       PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35929566063dSJacob Faibussowitsch       PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35934fd072dbSBarry Smith     } else {
35949f0612e4SBarry Smith       PetscCall(PetscShmgetAllocateArray(bs2 * nz, sizeof(PetscScalar), (void **)&c->a));
35959f0612e4SBarry Smith       PetscCall(PetscShmgetAllocateArray(nz, sizeof(PetscInt), (void **)&c->j));
35969f0612e4SBarry Smith       PetscCall(PetscShmgetAllocateArray(mbs + 1, sizeof(PetscInt), (void **)&c->i));
3597379be0ddSLisandro Dalcin       c->free_a  = PETSC_TRUE;
35984fd072dbSBarry Smith       c->free_ij = PETSC_TRUE;
359926fbe8dcSKarl Rupp 
36009566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(c->i, a->i, mbs + 1));
3601b6490206SBarry Smith       if (mbs > 0) {
36029566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(c->j, a->j, nz));
36032e8a6d31SBarry Smith         if (cpvalues == MAT_COPY_VALUES) {
36049566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(c->a, a->a, bs2 * nz));
36052e8a6d31SBarry Smith         } else {
36069566063dSJacob Faibussowitsch           PetscCall(PetscArrayzero(c->a, bs2 * nz));
36072593348eSBarry Smith         }
36082593348eSBarry Smith       }
36091e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
36101e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
361116a2bf60SHong Zhang     }
36124fd072dbSBarry Smith   }
361316a2bf60SHong Zhang 
36142593348eSBarry Smith   c->roworiented = a->roworiented;
36152593348eSBarry Smith   c->nonew       = a->nonew;
361626fbe8dcSKarl Rupp 
36179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
36189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
361926fbe8dcSKarl Rupp 
36205c9eb25fSBarry Smith   c->bs2 = a->bs2;
36215c9eb25fSBarry Smith   c->mbs = a->mbs;
36225c9eb25fSBarry Smith   c->nbs = a->nbs;
36232593348eSBarry Smith 
36242593348eSBarry Smith   if (a->diag) {
36254fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
36264fd072dbSBarry Smith       c->diag      = a->diag;
36274fd072dbSBarry Smith       c->free_diag = PETSC_FALSE;
36284fd072dbSBarry Smith     } else {
36299566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mbs + 1, &c->diag));
363026fbe8dcSKarl Rupp       for (i = 0; i < mbs; i++) c->diag[i] = a->diag[i];
36314fd072dbSBarry Smith       c->free_diag = PETSC_TRUE;
36324fd072dbSBarry Smith     }
3633f4259b30SLisandro Dalcin   } else c->diag = NULL;
363426fbe8dcSKarl Rupp 
36352593348eSBarry Smith   c->nz         = a->nz;
3636f2cbd3d5SJed Brown   c->maxnz      = a->nz; /* Since we allocate exactly the right amount */
3637f361c04dSBarry Smith   c->solve_work = NULL;
3638f361c04dSBarry Smith   c->mult_work  = NULL;
3639f361c04dSBarry Smith   c->sor_workt  = NULL;
3640f361c04dSBarry Smith   c->sor_work   = NULL;
364188e51ccdSHong Zhang 
364288e51ccdSHong Zhang   c->compressedrow.use   = a->compressedrow.use;
364388e51ccdSHong Zhang   c->compressedrow.nrows = a->compressedrow.nrows;
3644cd6b891eSBarry Smith   if (a->compressedrow.use) {
364588e51ccdSHong Zhang     i = a->compressedrow.nrows;
36469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(i + 1, &c->compressedrow.i, i + 1, &c->compressedrow.rindex));
36479566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(c->compressedrow.i, a->compressedrow.i, i + 1));
36489566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(c->compressedrow.rindex, a->compressedrow.rindex, i));
364988e51ccdSHong Zhang   } else {
365088e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
36510298fd71SBarry Smith     c->compressedrow.i      = NULL;
36520298fd71SBarry Smith     c->compressedrow.rindex = NULL;
365388e51ccdSHong Zhang   }
3654c05f355bSMark Adams   c->nonzerorowcnt = a->nonzerorowcnt;
3655e56f5c9eSBarry Smith   C->nonzerostate  = A->nonzerostate;
365626fbe8dcSKarl Rupp 
36579566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
36583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36592593348eSBarry Smith }
36602593348eSBarry Smith 
3661d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqBAIJ(Mat A, MatDuplicateOption cpvalues, Mat *B)
3662d71ae5a4SJacob Faibussowitsch {
3663b24902e0SBarry Smith   PetscFunctionBegin;
36649566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
36659566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*B, A->rmap->N, A->cmap->n, A->rmap->N, A->cmap->n));
36669566063dSJacob Faibussowitsch   PetscCall(MatSetType(*B, MATSEQBAIJ));
36679566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqBAIJ(*B, A, cpvalues, PETSC_TRUE));
36683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3669b24902e0SBarry Smith }
3670b24902e0SBarry Smith 
3671618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */
3672d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_SeqBAIJ_Binary(Mat mat, PetscViewer viewer)
3673d71ae5a4SJacob Faibussowitsch {
3674b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3675b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
3676b51a4376SLisandro Dalcin   PetscScalar *matvals;
3677b51a4376SLisandro Dalcin 
3678b51a4376SLisandro Dalcin   PetscFunctionBegin;
36799566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3680b51a4376SLisandro Dalcin 
3681b51a4376SLisandro Dalcin   /* read matrix header */
36829566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
36835f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
36849371c9d4SSatish Balay   M  = header[1];
36859371c9d4SSatish Balay   N  = header[2];
36869371c9d4SSatish Balay   nz = header[3];
36875f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
36885f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
36895f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as SeqBAIJ");
3690b51a4376SLisandro Dalcin 
3691b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
36929566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3693b51a4376SLisandro Dalcin   /* set local and global sizes if not set already */
3694b51a4376SLisandro Dalcin   if (mat->rmap->n < 0) mat->rmap->n = M;
3695b51a4376SLisandro Dalcin   if (mat->cmap->n < 0) mat->cmap->n = N;
3696b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3697b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
36989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
36999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3700b51a4376SLisandro Dalcin 
3701b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
37029566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
37035f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
37049566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
37059566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
37069371c9d4SSatish Balay   mbs = m / bs;
37079371c9d4SSatish Balay   nbs = n / bs;
3708b51a4376SLisandro Dalcin 
3709b51a4376SLisandro Dalcin   /* read in row lengths, column indices and nonzero values */
37109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
37119566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, rowidxs + 1, m, NULL, PETSC_INT));
37129371c9d4SSatish Balay   rowidxs[0] = 0;
37139371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
3714b51a4376SLisandro Dalcin   sum = rowidxs[m];
37155f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3716b51a4376SLisandro Dalcin 
3717b51a4376SLisandro Dalcin   /* read in column indices and nonzero values */
37189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, nz, &matvals));
37199566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, colidxs, rowidxs[m], NULL, PETSC_INT));
37209566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, matvals, rowidxs[m], NULL, PETSC_SCALAR));
3721b51a4376SLisandro Dalcin 
3722b51a4376SLisandro Dalcin   {               /* preallocate matrix storage */
3723b51a4376SLisandro Dalcin     PetscBT   bt; /* helper bit set to count nonzeros */
3724b51a4376SLisandro Dalcin     PetscInt *nnz;
3725618cc2edSLisandro Dalcin     PetscBool sbaij;
3726b51a4376SLisandro Dalcin 
37279566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
37289566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(mbs, &nnz));
37299566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATSEQSBAIJ, &sbaij));
3730b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
37319566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
3732618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3733618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3734618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3735618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3736618cc2edSLisandro Dalcin           if (!sbaij || col >= row)
3737618cc2edSLisandro Dalcin             if (!PetscBTLookupSet(bt, col / bs)) nnz[i]++;
3738618cc2edSLisandro Dalcin         }
3739618cc2edSLisandro Dalcin       }
3740b51a4376SLisandro Dalcin     }
37419566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
37429566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(mat, bs, 0, nnz));
37439566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(mat, bs, 0, nnz));
37449566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz));
3745b51a4376SLisandro Dalcin   }
3746b51a4376SLisandro Dalcin 
3747b51a4376SLisandro Dalcin   /* store matrix values */
3748b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3749b51a4376SLisandro Dalcin     PetscInt row = i, s = rowidxs[i], e = rowidxs[i + 1];
37509927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3751b51a4376SLisandro Dalcin   }
3752b51a4376SLisandro Dalcin 
37539566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
37549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
37559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
37569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
37573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3758b51a4376SLisandro Dalcin }
3759b51a4376SLisandro Dalcin 
3760d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_SeqBAIJ(Mat mat, PetscViewer viewer)
3761d71ae5a4SJacob Faibussowitsch {
37627f489da9SVaclav Hapla   PetscBool isbinary;
3763f501eaabSShri Abhyankar 
3764f501eaabSShri Abhyankar   PetscFunctionBegin;
37659566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
37665f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
37679566063dSJacob Faibussowitsch   PetscCall(MatLoad_SeqBAIJ_Binary(mat, viewer));
37683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3769f501eaabSShri Abhyankar }
3770f501eaabSShri Abhyankar 
37715d83a8b1SBarry Smith /*@
377211a5261eSBarry Smith   MatCreateSeqBAIJ - Creates a sparse matrix in `MATSEQAIJ` (block
3773273d9f13SBarry Smith   compressed row) format.  For good matrix assembly performance the
377420f4b53cSBarry Smith   user should preallocate the matrix storage by setting the parameter `nz`
377520f4b53cSBarry Smith   (or the array `nnz`).
37762593348eSBarry Smith 
3777d083f849SBarry Smith   Collective
3778273d9f13SBarry Smith 
3779273d9f13SBarry Smith   Input Parameters:
378011a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF`
378111a5261eSBarry Smith . bs   - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
378211a5261eSBarry Smith          blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
3783273d9f13SBarry Smith . m    - number of rows
3784273d9f13SBarry Smith . n    - number of columns
378535d8aa7fSBarry Smith . nz   - number of nonzero blocks  per block row (same for all rows)
378635d8aa7fSBarry Smith - nnz  - array containing the number of nonzero blocks in the various block rows
378720f4b53cSBarry Smith          (possibly different for each block row) or `NULL`
3788273d9f13SBarry Smith 
3789273d9f13SBarry Smith   Output Parameter:
3790273d9f13SBarry Smith . A - the matrix
3791273d9f13SBarry Smith 
3792273d9f13SBarry Smith   Options Database Keys:
379311a5261eSBarry Smith + -mat_no_unroll  - uses code that does not unroll the loops in the block calculations (much slower)
3794a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
3795273d9f13SBarry Smith 
3796273d9f13SBarry Smith   Level: intermediate
3797273d9f13SBarry Smith 
3798273d9f13SBarry Smith   Notes:
379977433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
38002ef1f0ffSBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
38012ef1f0ffSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
38022ef1f0ffSBarry Smith 
3803d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
3804d1be2dadSMatthew Knepley 
38052ef1f0ffSBarry Smith   If the `nnz` parameter is given then the `nz` parameter is ignored
380649a6f317SBarry Smith 
380735d8aa7fSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
380835d8aa7fSBarry Smith 
38092ef1f0ffSBarry Smith   The `MATSEQBAIJ` format is fully compatible with standard Fortran
3810273d9f13SBarry Smith   storage.  That is, the stored row and column indices can begin at
381120f4b53cSBarry Smith   either one (as in Fortran) or zero.
3812273d9f13SBarry Smith 
38132ef1f0ffSBarry Smith   Specify the preallocated storage with either `nz` or `nnz` (not both).
38142ef1f0ffSBarry Smith   Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory
3815651615e1SBarry Smith   allocation.  See [Sparse Matrices](sec_matsparse) for details.
3816273d9f13SBarry Smith   matrices.
3817273d9f13SBarry Smith 
38181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`
3819273d9f13SBarry Smith @*/
3820d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSeqBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt nz, const PetscInt nnz[], Mat *A)
3821d71ae5a4SJacob Faibussowitsch {
3822273d9f13SBarry Smith   PetscFunctionBegin;
38239566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
38249566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, m, n));
38259566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A, MATSEQBAIJ));
38269566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(*A, bs, nz, (PetscInt *)nnz));
38273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3828273d9f13SBarry Smith }
3829273d9f13SBarry Smith 
38305d83a8b1SBarry Smith /*@
3831273d9f13SBarry Smith   MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3832273d9f13SBarry Smith   per row in the matrix. For good matrix assembly performance the
383320f4b53cSBarry Smith   user should preallocate the matrix storage by setting the parameter `nz`
383420f4b53cSBarry Smith   (or the array `nnz`).
3835273d9f13SBarry Smith 
3836d083f849SBarry Smith   Collective
3837273d9f13SBarry Smith 
3838273d9f13SBarry Smith   Input Parameters:
38391c4f3114SJed Brown + B   - the matrix
384011a5261eSBarry Smith . bs  - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
384111a5261eSBarry Smith         blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
3842273d9f13SBarry Smith . nz  - number of block nonzeros per block row (same for all rows)
3843273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows
38442ef1f0ffSBarry Smith         (possibly different for each block row) or `NULL`
3845273d9f13SBarry Smith 
3846273d9f13SBarry Smith   Options Database Keys:
384711a5261eSBarry Smith + -mat_no_unroll  - uses code that does not unroll the loops in the block calculations (much slower)
3848a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
3849273d9f13SBarry Smith 
3850273d9f13SBarry Smith   Level: intermediate
3851273d9f13SBarry Smith 
3852273d9f13SBarry Smith   Notes:
38532ef1f0ffSBarry Smith   If the `nnz` parameter is given then the `nz` parameter is ignored
385449a6f317SBarry Smith 
385511a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3856aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
385720f4b53cSBarry Smith   You can also run with the option `-info` and look for messages with the string
3858aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3859aa95bbe8SBarry Smith 
38602ef1f0ffSBarry Smith   The `MATSEQBAIJ` format is fully compatible with standard Fortran
3861273d9f13SBarry Smith   storage.  That is, the stored row and column indices can begin at
386220f4b53cSBarry Smith   either one (as in Fortran) or zero.
3863273d9f13SBarry Smith 
3864d8a51d2aSBarry Smith   Specify the preallocated storage with either `nz` or `nnz` (not both).
38652ef1f0ffSBarry Smith   Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory
3866651615e1SBarry Smith   allocation.  See [Sparse Matrices](sec_matsparse) for details.
3867273d9f13SBarry Smith 
38681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatGetInfo()`
3869273d9f13SBarry Smith @*/
3870d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[])
3871d71ae5a4SJacob Faibussowitsch {
3872273d9f13SBarry Smith   PetscFunctionBegin;
38736ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
38746ba663aaSJed Brown   PetscValidType(B, 1);
38756ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3876cac4c232SBarry Smith   PetscTryMethod(B, "MatSeqBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[]), (B, bs, nz, nnz));
38773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3878273d9f13SBarry Smith }
3879a1d92eedSBarry Smith 
3880725b52f3SLisandro Dalcin /*@C
388111a5261eSBarry Smith   MatSeqBAIJSetPreallocationCSR - Creates a sparse sequential matrix in `MATSEQBAIJ` format using the given nonzero structure and (optional) numerical values
3882725b52f3SLisandro Dalcin 
3883d083f849SBarry Smith   Collective
3884725b52f3SLisandro Dalcin 
3885725b52f3SLisandro Dalcin   Input Parameters:
38861c4f3114SJed Brown + B  - the matrix
388720f4b53cSBarry Smith . bs - the blocksize
3888d8a51d2aSBarry Smith . i  - the indices into `j` for the start of each local row (indices start with zero)
3889d8a51d2aSBarry Smith . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
3890d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
3891725b52f3SLisandro Dalcin 
3892664954b6SBarry Smith   Level: advanced
3893725b52f3SLisandro Dalcin 
38943adadaf3SJed Brown   Notes:
3895d8a51d2aSBarry Smith   The `i`,`j`,`v` values are COPIED with this routine; to avoid the copy use `MatCreateSeqBAIJWithArrays()`
3896d8a51d2aSBarry Smith 
389711a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
389811a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` of `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
38993adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
390011a5261eSBarry Smith   `MAT_ROW_ORIENTED` of `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
39013adadaf3SJed Brown   block column and the second index is over columns within a block.
39023adadaf3SJed Brown 
3903664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
3904664954b6SBarry Smith 
39051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatSeqBAIJSetPreallocation()`, `MATSEQBAIJ`
3906725b52f3SLisandro Dalcin @*/
3907d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
3908d71ae5a4SJacob Faibussowitsch {
3909725b52f3SLisandro Dalcin   PetscFunctionBegin;
39106ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
39116ba663aaSJed Brown   PetscValidType(B, 1);
39126ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3913cac4c232SBarry Smith   PetscTryMethod(B, "MatSeqBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
39143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3915725b52f3SLisandro Dalcin }
3916725b52f3SLisandro Dalcin 
3917c75a6043SHong Zhang /*@
391811a5261eSBarry Smith   MatCreateSeqBAIJWithArrays - Creates a `MATSEQBAIJ` matrix using matrix elements provided by the user.
3919c75a6043SHong Zhang 
3920d083f849SBarry Smith   Collective
3921c75a6043SHong Zhang 
3922c75a6043SHong Zhang   Input Parameters:
3923c75a6043SHong Zhang + comm - must be an MPI communicator of size 1
3924c75a6043SHong Zhang . bs   - size of block
3925c75a6043SHong Zhang . m    - number of rows
3926c75a6043SHong Zhang . n    - number of columns
3927483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row block row of the matrix
3928c75a6043SHong Zhang . j    - column indices
3929c75a6043SHong Zhang - a    - matrix values
3930c75a6043SHong Zhang 
3931c75a6043SHong Zhang   Output Parameter:
3932c75a6043SHong Zhang . mat - the matrix
3933c75a6043SHong Zhang 
3934dfb205c3SBarry Smith   Level: advanced
3935c75a6043SHong Zhang 
3936c75a6043SHong Zhang   Notes:
39372ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays are not copied by this routine, the user must free these arrays
3938c75a6043SHong Zhang   once the matrix is destroyed
3939c75a6043SHong Zhang 
3940c75a6043SHong Zhang   You cannot set new nonzero locations into this matrix, that will generate an error.
3941c75a6043SHong Zhang 
39422ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
3943c75a6043SHong Zhang 
394411a5261eSBarry Smith   When block size is greater than 1 the matrix values must be stored using the `MATSEQBAIJ` storage format
3945dfb205c3SBarry Smith 
39463adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
39473adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
39483adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
39493adadaf3SJed Brown   with column-major ordering within blocks.
3950dfb205c3SBarry Smith 
39511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateBAIJ()`, `MatCreateSeqBAIJ()`
3952c75a6043SHong Zhang @*/
3953d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt i[], PetscInt j[], PetscScalar a[], Mat *mat)
3954d71ae5a4SJacob Faibussowitsch {
3955c75a6043SHong Zhang   Mat_SeqBAIJ *baij;
3956c75a6043SHong Zhang 
3957c75a6043SHong Zhang   PetscFunctionBegin;
39585f80ce2aSJacob Faibussowitsch   PetscCheck(bs == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "block size %" PetscInt_FMT " > 1 is not supported yet", bs);
39595f80ce2aSJacob Faibussowitsch   if (m > 0) PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
3960c75a6043SHong Zhang 
39619566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
39629566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, m, n));
39639566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATSEQBAIJ));
39649566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(*mat, bs, MAT_SKIP_ALLOCATION, NULL));
3965c75a6043SHong Zhang   baij = (Mat_SeqBAIJ *)(*mat)->data;
39669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &baij->imax, m, &baij->ilen));
3967c75a6043SHong Zhang 
3968c75a6043SHong Zhang   baij->i = i;
3969c75a6043SHong Zhang   baij->j = j;
3970c75a6043SHong Zhang   baij->a = a;
397126fbe8dcSKarl Rupp 
3972c75a6043SHong Zhang   baij->nonew          = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3973e6b907acSBarry Smith   baij->free_a         = PETSC_FALSE;
3974e6b907acSBarry Smith   baij->free_ij        = PETSC_FALSE;
3975ceb5bf51SJacob Faibussowitsch   baij->free_imax_ilen = PETSC_TRUE;
3976c75a6043SHong Zhang 
3977ceb5bf51SJacob Faibussowitsch   for (PetscInt ii = 0; ii < m; ii++) {
3978ceb5bf51SJacob Faibussowitsch     const PetscInt row_len = i[ii + 1] - i[ii];
3979ceb5bf51SJacob Faibussowitsch 
3980ceb5bf51SJacob Faibussowitsch     baij->ilen[ii] = baij->imax[ii] = row_len;
3981ceb5bf51SJacob Faibussowitsch     PetscCheck(row_len >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row length in i (row indices) row = %" PetscInt_FMT " length = %" PetscInt_FMT, ii, row_len);
3982c75a6043SHong Zhang   }
398376bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
3984ceb5bf51SJacob Faibussowitsch     for (PetscInt ii = 0; ii < baij->i[m]; ii++) {
39856bdcaf15SBarry Smith       PetscCheck(j[ii] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative column index at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]);
39866bdcaf15SBarry Smith       PetscCheck(j[ii] <= n - 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index to large at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]);
3987c75a6043SHong Zhang     }
398876bd3646SJed Brown   }
3989c75a6043SHong Zhang 
39909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
39919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
39923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3993c75a6043SHong Zhang }
3994bdf6f3fcSHong Zhang 
3995d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3996d71ae5a4SJacob Faibussowitsch {
3997bdf6f3fcSHong Zhang   PetscFunctionBegin;
39989566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(comm, inmat, n, scall, outmat));
39993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4000bdf6f3fcSHong Zhang }
4001